Query 010222
Match_columns 514
No_of_seqs 185 out of 798
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 22:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 1.1E-12 2.5E-17 103.6 9.3 63 431-493 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.2E-11 2.7E-16 97.7 9.6 61 432-492 3-63 (64)
3 KOG4005 Transcription factor X 99.3 2.7E-11 5.9E-16 119.5 12.6 81 423-504 59-139 (292)
4 KOG4343 bZIP transcription fac 99.1 1.7E-10 3.8E-15 123.3 7.3 64 434-497 281-344 (655)
5 PF07716 bZIP_2: Basic region 99.1 6E-10 1.3E-14 86.0 8.3 53 431-484 2-54 (54)
6 KOG0709 CREB/ATF family transc 98.9 1E-09 2.2E-14 115.9 6.2 69 431-499 248-316 (472)
7 KOG3584 cAMP response element 98.8 4.4E-09 9.5E-14 106.4 6.7 53 432-484 289-341 (348)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.2 1.9E-08 4.2E-13 85.2 -7.4 78 414-493 12-89 (92)
9 KOG0837 Transcriptional activa 97.8 6.1E-05 1.3E-09 75.9 8.5 52 434-485 205-257 (279)
10 KOG4571 Activating transcripti 97.5 0.00055 1.2E-08 69.9 10.2 60 430-489 222-282 (294)
11 KOG4196 bZIP transcription fac 97.4 0.0014 3.1E-08 60.5 9.8 66 432-504 51-116 (135)
12 KOG3863 bZIP transcription fac 97.2 0.00058 1.3E-08 75.3 6.4 67 433-506 489-555 (604)
13 KOG3119 Basic region leucine z 97.2 0.0022 4.7E-08 64.3 9.6 63 430-492 190-252 (269)
14 PF06156 DUF972: Protein of un 96.5 0.012 2.6E-07 52.3 8.0 50 455-504 8-57 (107)
15 PRK13169 DNA replication intia 96.4 0.015 3.2E-07 52.3 7.9 50 455-504 8-57 (110)
16 PF06005 DUF904: Protein of un 95.9 0.073 1.6E-06 44.6 9.1 50 455-504 4-53 (72)
17 KOG4005 Transcription factor X 95.9 0.15 3.2E-06 51.9 12.7 86 424-509 63-151 (292)
18 PRK10884 SH3 domain-containing 94.6 0.59 1.3E-05 45.8 12.3 44 455-498 125-168 (206)
19 TIGR02449 conserved hypothetic 94.5 0.26 5.6E-06 40.9 8.0 50 456-505 8-57 (65)
20 PF08614 ATG16: Autophagy prot 94.4 0.73 1.6E-05 43.8 12.1 72 431-502 113-184 (194)
21 TIGR02894 DNA_bind_RsfA transc 94.1 0.3 6.5E-06 46.8 8.8 50 455-504 87-139 (161)
22 PRK10884 SH3 domain-containing 94.1 0.58 1.3E-05 45.9 11.0 57 453-509 116-172 (206)
23 PF04102 SlyX: SlyX; InterPro 94.0 0.27 5.8E-06 40.3 7.2 51 455-505 4-54 (69)
24 PRK13729 conjugal transfer pil 93.8 0.24 5.2E-06 54.1 8.6 49 456-504 77-125 (475)
25 COG4467 Regulator of replicati 93.8 0.21 4.5E-06 45.4 6.8 47 455-501 8-54 (114)
26 PRK00295 hypothetical protein; 93.6 0.47 1E-05 39.1 8.0 48 456-503 6-53 (68)
27 PF10473 CENP-F_leu_zip: Leuci 93.6 1.2 2.6E-05 41.7 11.6 73 432-504 29-101 (140)
28 PRK02793 phi X174 lysis protei 93.5 0.43 9.4E-06 39.7 7.7 50 455-504 8-57 (72)
29 PRK00736 hypothetical protein; 93.4 0.48 1E-05 39.1 7.8 50 455-504 5-54 (68)
30 PF02183 HALZ: Homeobox associ 93.4 0.23 5.1E-06 38.3 5.5 42 466-507 2-43 (45)
31 PRK04325 hypothetical protein; 93.3 0.49 1.1E-05 39.6 7.7 50 455-504 9-58 (74)
32 PF13747 DUF4164: Domain of un 93.3 1.7 3.8E-05 37.5 11.3 69 434-502 11-79 (89)
33 TIGR02449 conserved hypothetic 93.2 0.66 1.4E-05 38.6 8.3 49 457-505 2-50 (65)
34 PRK02119 hypothetical protein; 93.2 0.51 1.1E-05 39.5 7.7 50 454-503 8-57 (73)
35 PRK04406 hypothetical protein; 92.9 0.57 1.2E-05 39.5 7.6 49 455-503 11-59 (75)
36 PF06005 DUF904: Protein of un 92.8 1.1 2.3E-05 37.7 9.1 46 457-502 20-65 (72)
37 PRK11637 AmiB activator; Provi 92.6 1.8 3.9E-05 45.5 12.5 59 446-504 66-124 (428)
38 PF10805 DUF2730: Protein of u 92.6 1 2.3E-05 39.6 9.1 53 456-508 43-97 (106)
39 PF10224 DUF2205: Predicted co 92.4 0.84 1.8E-05 39.2 8.1 51 458-508 19-69 (80)
40 COG3074 Uncharacterized protei 92.2 0.88 1.9E-05 39.0 7.8 45 457-501 20-64 (79)
41 PRK00846 hypothetical protein; 91.9 0.96 2.1E-05 38.7 7.8 51 454-504 12-62 (77)
42 PF11559 ADIP: Afadin- and alp 91.7 3.8 8.2E-05 37.3 12.0 66 435-500 46-111 (151)
43 KOG1414 Transcriptional activa 91.6 0.0084 1.8E-07 62.9 -5.8 62 430-491 150-215 (395)
44 PRK15422 septal ring assembly 91.2 1.3 2.8E-05 38.3 7.9 37 456-492 5-41 (79)
45 PF09726 Macoilin: Transmembra 91.0 2.1 4.6E-05 48.8 11.7 42 457-498 540-581 (697)
46 PF11932 DUF3450: Protein of u 91.0 4.1 8.8E-05 40.1 12.3 44 459-502 53-96 (251)
47 PF14197 Cep57_CLD_2: Centroso 90.9 2.1 4.6E-05 35.6 8.8 51 455-505 12-62 (69)
48 COG4942 Membrane-bound metallo 90.8 2.6 5.7E-05 45.7 11.6 73 434-506 38-110 (420)
49 PRK11637 AmiB activator; Provi 90.7 3.8 8.2E-05 43.2 12.5 63 441-503 184-253 (428)
50 PF06156 DUF972: Protein of un 90.6 1.5 3.2E-05 39.3 8.1 50 459-508 5-54 (107)
51 COG1579 Zn-ribbon protein, pos 90.3 5.5 0.00012 40.3 12.7 47 457-503 91-137 (239)
52 PF02183 HALZ: Homeobox associ 90.2 1.1 2.3E-05 34.7 6.0 42 459-500 2-43 (45)
53 COG1579 Zn-ribbon protein, pos 89.2 6.7 0.00014 39.8 12.3 73 431-503 28-109 (239)
54 COG3074 Uncharacterized protei 89.2 2.9 6.4E-05 35.9 8.3 48 456-503 5-52 (79)
55 PF11932 DUF3450: Protein of u 89.1 6.3 0.00014 38.8 12.0 49 450-498 51-99 (251)
56 PF13851 GAS: Growth-arrest sp 89.0 6.9 0.00015 38.1 12.0 60 431-490 69-128 (201)
57 PF14662 CCDC155: Coiled-coil 88.9 2.1 4.5E-05 42.3 8.3 57 456-512 9-65 (193)
58 PRK10698 phage shock protein P 88.9 6 0.00013 39.0 11.6 68 446-513 87-157 (222)
59 KOG0288 WD40 repeat protein Ti 88.8 6.9 0.00015 42.8 12.7 64 415-482 12-75 (459)
60 PRK15422 septal ring assembly 88.7 2.6 5.6E-05 36.5 7.8 47 456-502 19-65 (79)
61 PF07989 Microtub_assoc: Micro 88.6 3.1 6.6E-05 35.2 8.0 51 457-507 2-60 (75)
62 PRK10803 tol-pal system protei 88.3 2.8 6.2E-05 42.0 9.1 49 456-504 55-103 (263)
63 PF05266 DUF724: Protein of un 88.2 8.6 0.00019 37.5 12.0 53 432-484 87-146 (190)
64 COG2900 SlyX Uncharacterized p 88.2 2.6 5.5E-05 36.0 7.3 52 455-506 8-59 (72)
65 TIGR02977 phageshock_pspA phag 88.0 5.4 0.00012 38.8 10.5 61 452-512 96-156 (219)
66 PF11559 ADIP: Afadin- and alp 87.4 12 0.00026 34.1 11.8 48 454-501 72-119 (151)
67 KOG1103 Predicted coiled-coil 87.2 1.8 3.8E-05 46.6 7.1 64 443-506 226-289 (561)
68 PF04880 NUDE_C: NUDE protein, 87.0 0.82 1.8E-05 43.9 4.2 43 457-499 2-47 (166)
69 PF07888 CALCOCO1: Calcium bin 87.0 8.1 0.00018 43.3 12.3 51 439-489 155-205 (546)
70 KOG1962 B-cell receptor-associ 87.0 3.4 7.4E-05 41.3 8.6 46 455-500 165-210 (216)
71 PF07106 TBPIP: Tat binding pr 86.7 2.7 5.8E-05 39.0 7.4 51 454-504 85-137 (169)
72 PF04111 APG6: Autophagy prote 86.7 3.2 6.9E-05 42.9 8.6 30 453-482 62-91 (314)
73 PF10186 Atg14: UV radiation r 86.7 12 0.00026 36.3 12.0 31 457-487 65-95 (302)
74 PF12718 Tropomyosin_1: Tropom 86.6 4.4 9.5E-05 37.6 8.6 52 455-506 35-89 (143)
75 PF07200 Mod_r: Modifier of ru 86.6 15 0.00032 33.3 11.9 83 411-494 4-87 (150)
76 PF04012 PspA_IM30: PspA/IM30 86.6 7.7 0.00017 37.1 10.6 57 456-512 99-155 (221)
77 PRK13922 rod shape-determining 86.5 4.6 0.0001 39.9 9.3 36 465-500 72-110 (276)
78 COG4026 Uncharacterized protei 86.5 4 8.8E-05 41.7 8.9 7 363-369 76-82 (290)
79 PF04156 IncA: IncA protein; 86.5 15 0.00033 34.2 12.2 68 439-506 114-181 (191)
80 PF09304 Cortex-I_coil: Cortex 86.4 6.4 0.00014 35.8 9.2 56 438-493 20-75 (107)
81 TIGR03752 conj_TIGR03752 integ 86.4 1.7 3.8E-05 47.6 6.8 22 457-478 75-96 (472)
82 PF14662 CCDC155: Coiled-coil 86.2 6.5 0.00014 38.9 9.9 45 458-502 98-142 (193)
83 TIGR00219 mreC rod shape-deter 86.1 1.7 3.8E-05 44.0 6.3 39 463-501 67-109 (283)
84 PRK13169 DNA replication intia 86.1 4.4 9.6E-05 36.7 8.1 48 459-506 5-52 (110)
85 TIGR03752 conj_TIGR03752 integ 86.0 3.3 7.1E-05 45.6 8.6 22 460-481 71-92 (472)
86 PRK09039 hypothetical protein; 85.8 11 0.00025 39.3 12.1 40 463-502 138-177 (343)
87 KOG0243 Kinesin-like protein [ 85.8 6 0.00013 47.2 11.0 62 439-500 415-493 (1041)
88 PF05103 DivIVA: DivIVA protei 85.6 0.44 9.6E-06 41.5 1.6 46 455-500 25-70 (131)
89 PF08317 Spc7: Spc7 kinetochor 85.5 15 0.00032 37.9 12.6 7 267-273 105-111 (325)
90 PF08172 CASP_C: CASP C termin 85.4 3.2 7E-05 41.8 7.7 43 451-493 89-131 (248)
91 PF08647 BRE1: BRE1 E3 ubiquit 85.2 24 0.00053 30.6 12.0 65 436-500 5-69 (96)
92 PRK02119 hypothetical protein; 84.9 7.4 0.00016 32.6 8.4 52 456-507 3-54 (73)
93 PF13851 GAS: Growth-arrest sp 84.8 26 0.00056 34.2 13.3 51 451-501 82-132 (201)
94 TIGR02894 DNA_bind_RsfA transc 84.8 5.2 0.00011 38.6 8.4 39 452-490 108-146 (161)
95 PRK04406 hypothetical protein; 84.7 8.2 0.00018 32.6 8.6 52 456-507 5-56 (75)
96 PHA02562 46 endonuclease subun 84.7 9.8 0.00021 40.6 11.3 31 461-491 364-394 (562)
97 PF10211 Ax_dynein_light: Axon 84.6 15 0.00032 35.6 11.4 61 452-512 124-186 (189)
98 PF02403 Seryl_tRNA_N: Seryl-t 84.4 11 0.00023 32.4 9.5 48 459-506 40-90 (108)
99 PF12709 Kinetocho_Slk19: Cent 84.3 4.4 9.5E-05 35.6 7.0 42 453-494 40-81 (87)
100 PRK10803 tol-pal system protei 84.1 5 0.00011 40.3 8.4 43 454-496 60-102 (263)
101 PRK00888 ftsB cell division pr 84.0 4.2 9.2E-05 36.0 6.9 32 452-483 31-62 (105)
102 KOG1414 Transcriptional activa 84.0 0.18 3.9E-06 53.1 -1.9 54 432-485 283-337 (395)
103 PF15070 GOLGA2L5: Putative go 83.9 12 0.00025 42.5 11.9 63 438-500 105-191 (617)
104 smart00338 BRLZ basic region l 83.9 4.5 9.7E-05 32.2 6.4 35 463-497 27-61 (65)
105 PF05266 DUF724: Protein of un 83.8 14 0.0003 36.0 11.0 56 449-504 125-180 (190)
106 PF08614 ATG16: Autophagy prot 83.8 8.7 0.00019 36.6 9.4 48 457-504 125-172 (194)
107 KOG3119 Basic region leucine z 83.6 5.9 0.00013 40.2 8.7 31 472-502 218-248 (269)
108 PF06216 RTBV_P46: Rice tungro 83.5 5.5 0.00012 41.4 8.4 52 455-506 64-115 (389)
109 PF05700 BCAS2: Breast carcino 83.2 5.7 0.00012 38.9 8.2 55 450-505 164-218 (221)
110 PRK14127 cell division protein 83.2 7.8 0.00017 35.1 8.3 49 458-506 40-101 (109)
111 PRK09039 hypothetical protein; 82.9 5.9 0.00013 41.3 8.6 41 462-502 123-163 (343)
112 PF04728 LPP: Lipoprotein leuc 82.9 13 0.00028 30.5 8.6 48 456-503 4-51 (56)
113 PF14197 Cep57_CLD_2: Centroso 82.9 8.6 0.00019 32.1 7.9 45 458-502 22-66 (69)
114 KOG0995 Centromere-associated 82.4 16 0.00035 41.3 12.0 49 452-500 277-325 (581)
115 PF04102 SlyX: SlyX; InterPro 82.3 8.4 0.00018 31.6 7.6 48 459-506 1-48 (69)
116 PF15294 Leu_zip: Leucine zipp 81.8 4.7 0.0001 41.7 7.2 45 460-504 130-174 (278)
117 KOG2264 Exostosin EXT1L [Signa 81.8 11 0.00024 43.1 10.4 48 455-502 93-140 (907)
118 PF10805 DUF2730: Protein of u 81.8 9.2 0.0002 33.8 8.2 52 453-504 47-100 (106)
119 COG2433 Uncharacterized conser 81.4 5.1 0.00011 45.4 7.9 42 457-498 424-465 (652)
120 COG4026 Uncharacterized protei 81.4 15 0.00033 37.7 10.5 27 459-485 139-165 (290)
121 KOG1029 Endocytic adaptor prot 81.0 15 0.00032 43.2 11.4 15 41-55 43-57 (1118)
122 KOG4196 bZIP transcription fac 81.0 6.3 0.00014 37.1 7.1 32 473-504 78-109 (135)
123 PRK13729 conjugal transfer pil 80.9 6.6 0.00014 43.3 8.4 49 457-505 71-119 (475)
124 PF07106 TBPIP: Tat binding pr 80.8 5.9 0.00013 36.8 7.0 56 453-508 107-163 (169)
125 PF10473 CENP-F_leu_zip: Leuci 80.6 32 0.0007 32.4 11.6 35 472-506 62-96 (140)
126 KOG0946 ER-Golgi vesicle-tethe 80.5 5.8 0.00013 46.4 8.1 62 439-500 655-716 (970)
127 PF05667 DUF812: Protein of un 80.5 9.6 0.00021 42.9 9.7 59 452-510 325-383 (594)
128 PF04849 HAP1_N: HAP1 N-termin 80.3 8.4 0.00018 40.4 8.5 44 467-510 232-276 (306)
129 PF12718 Tropomyosin_1: Tropom 80.2 12 0.00025 34.9 8.6 46 456-501 15-60 (143)
130 COG3883 Uncharacterized protei 80.2 10 0.00022 39.1 9.0 25 456-480 60-84 (265)
131 PRK03918 chromosome segregatio 80.2 21 0.00046 40.4 12.3 7 414-420 145-151 (880)
132 PF00170 bZIP_1: bZIP transcri 80.1 15 0.00032 29.2 8.1 31 474-504 31-61 (64)
133 PF12325 TMF_TATA_bd: TATA ele 79.9 12 0.00027 34.2 8.5 34 460-493 28-61 (120)
134 PF15035 Rootletin: Ciliary ro 79.9 12 0.00027 36.2 9.0 55 456-510 68-122 (182)
135 PF04977 DivIC: Septum formati 79.6 5.5 0.00012 31.7 5.6 28 454-481 23-50 (80)
136 PF07798 DUF1640: Protein of u 79.3 50 0.0011 31.2 12.7 13 409-421 14-26 (177)
137 PF10186 Atg14: UV radiation r 79.3 50 0.0011 32.1 13.0 21 456-476 71-91 (302)
138 PF10226 DUF2216: Uncharacteri 79.2 35 0.00077 34.0 11.9 30 410-447 7-36 (195)
139 PF06785 UPF0242: Uncharacteri 78.9 23 0.0005 38.1 11.2 60 451-510 123-183 (401)
140 PLN02678 seryl-tRNA synthetase 78.9 23 0.0005 38.7 11.6 47 460-506 45-94 (448)
141 PF03962 Mnd1: Mnd1 family; I 78.4 18 0.00039 35.0 9.6 20 449-468 77-96 (188)
142 PF05529 Bap31: B-cell recepto 78.4 18 0.0004 34.1 9.6 38 467-504 152-189 (192)
143 PF11180 DUF2968: Protein of u 78.3 42 0.0009 33.4 12.1 80 427-507 99-178 (192)
144 PF14988 DUF4515: Domain of un 78.2 25 0.00055 34.6 10.7 56 457-512 151-206 (206)
145 KOG0483 Transcription factor H 78.1 6.3 0.00014 38.9 6.6 63 430-507 88-150 (198)
146 KOG0250 DNA repair protein RAD 77.8 21 0.00046 42.9 11.6 46 454-499 378-424 (1074)
147 TIGR00414 serS seryl-tRNA synt 77.7 19 0.00042 38.5 10.5 48 459-506 41-92 (418)
148 TIGR02209 ftsL_broad cell divi 77.6 10 0.00022 31.0 6.7 25 456-480 32-56 (85)
149 PF05278 PEARLI-4: Arabidopsis 77.5 43 0.00092 34.8 12.4 52 455-506 207-258 (269)
150 PRK05431 seryl-tRNA synthetase 77.5 24 0.00053 37.8 11.2 46 460-505 40-88 (425)
151 PRK02793 phi X174 lysis protei 77.4 19 0.0004 30.1 8.2 50 458-507 4-53 (72)
152 PF07888 CALCOCO1: Calcium bin 77.3 28 0.0006 39.3 11.9 35 473-507 421-455 (546)
153 PRK04863 mukB cell division pr 77.3 35 0.00076 42.5 13.7 22 434-455 321-342 (1486)
154 COG4467 Regulator of replicati 77.2 12 0.00027 34.3 7.6 48 459-506 5-52 (114)
155 PF04871 Uso1_p115_C: Uso1 / p 76.9 33 0.00071 31.8 10.4 47 457-503 57-111 (136)
156 PF14282 FlxA: FlxA-like prote 76.9 14 0.0003 32.7 7.7 23 476-498 51-73 (106)
157 PF04111 APG6: Autophagy prote 76.8 48 0.001 34.4 12.7 59 446-504 69-127 (314)
158 PRK04325 hypothetical protein; 76.7 19 0.00042 30.2 8.1 50 457-506 4-53 (74)
159 KOG4343 bZIP transcription fac 76.6 12 0.00025 42.4 8.7 64 431-505 275-338 (655)
160 KOG1962 B-cell receptor-associ 76.6 28 0.0006 35.1 10.5 9 504-512 201-209 (216)
161 PF12325 TMF_TATA_bd: TATA ele 76.6 25 0.00055 32.2 9.5 14 490-503 96-109 (120)
162 KOG0982 Centrosomal protein Nu 76.5 20 0.00043 39.6 10.2 50 456-505 298-347 (502)
163 PRK00295 hypothetical protein; 76.3 20 0.00042 29.7 8.0 47 460-506 3-49 (68)
164 PF05377 FlaC_arch: Flagella a 76.0 9.6 0.00021 31.1 5.9 19 457-475 2-20 (55)
165 PRK00888 ftsB cell division pr 75.8 9.9 0.00022 33.7 6.5 26 458-483 30-55 (105)
166 smart00787 Spc7 Spc7 kinetocho 75.8 46 0.001 34.8 12.3 15 354-368 123-137 (312)
167 PHA02562 46 endonuclease subun 75.6 32 0.0007 36.8 11.5 41 465-505 361-401 (562)
168 PF09304 Cortex-I_coil: Cortex 75.6 66 0.0014 29.5 12.4 55 447-501 22-76 (107)
169 KOG0709 CREB/ATF family transc 75.4 5.8 0.00012 43.7 5.9 69 428-504 242-314 (472)
170 PF08317 Spc7: Spc7 kinetochor 75.2 32 0.00069 35.5 11.0 44 456-499 210-253 (325)
171 PRK00846 hypothetical protein; 75.2 22 0.00048 30.6 8.2 49 458-506 9-57 (77)
172 PF11365 DUF3166: Protein of u 75.1 11 0.00025 33.5 6.7 43 457-499 3-45 (96)
173 PF09744 Jnk-SapK_ap_N: JNK_SA 74.8 30 0.00064 33.1 9.8 34 466-499 86-119 (158)
174 KOG0804 Cytoplasmic Zn-finger 74.8 30 0.00065 38.4 11.0 79 432-512 362-448 (493)
175 PF02388 FemAB: FemAB family; 74.6 12 0.00027 39.5 8.0 27 454-480 241-267 (406)
176 PF12709 Kinetocho_Slk19: Cent 74.6 25 0.00053 31.1 8.5 55 450-504 22-77 (87)
177 PRK03918 chromosome segregatio 74.5 40 0.00086 38.2 12.4 6 406-411 155-160 (880)
178 PF10779 XhlA: Haemolysin XhlA 74.4 21 0.00046 29.3 7.7 49 458-506 2-50 (71)
179 PRK05431 seryl-tRNA synthetase 74.2 37 0.0008 36.5 11.5 51 455-505 42-95 (425)
180 KOG1029 Endocytic adaptor prot 74.2 36 0.00078 40.3 11.9 9 440-448 395-403 (1118)
181 KOG4360 Uncharacterized coiled 74.1 13 0.00028 41.7 8.2 55 457-511 221-276 (596)
182 PF04156 IncA: IncA protein; 74.1 22 0.00047 33.2 8.7 21 462-482 130-150 (191)
183 PF04642 DUF601: Protein of un 74.0 6.6 0.00014 40.7 5.6 56 455-510 217-281 (311)
184 PF08537 NBP1: Fungal Nap bind 73.9 23 0.0005 37.6 9.6 71 432-502 120-201 (323)
185 PF04899 MbeD_MobD: MbeD/MobD 73.7 25 0.00054 29.7 8.1 46 461-506 20-65 (70)
186 PF06810 Phage_GP20: Phage min 73.7 24 0.00052 33.3 8.9 54 458-511 30-90 (155)
187 COG3883 Uncharacterized protei 73.7 20 0.00043 37.1 8.9 42 457-498 40-81 (265)
188 PF12329 TMF_DNA_bd: TATA elem 73.5 33 0.00072 28.8 8.8 52 453-504 10-61 (74)
189 PRK04863 mukB cell division pr 73.4 38 0.00083 42.2 12.7 36 474-509 395-430 (1486)
190 PRK00736 hypothetical protein; 73.3 26 0.00056 29.0 7.9 49 459-507 2-50 (68)
191 PF10481 CENP-F_N: Cenp-F N-te 73.2 34 0.00074 36.0 10.5 53 455-507 53-119 (307)
192 KOG0977 Nuclear envelope prote 73.0 27 0.00059 39.3 10.5 59 445-503 131-189 (546)
193 PF04977 DivIC: Septum formati 73.0 14 0.0003 29.4 6.2 30 473-502 21-50 (80)
194 KOG4643 Uncharacterized coiled 72.9 31 0.00067 41.6 11.2 69 433-504 490-558 (1195)
195 PF10146 zf-C4H2: Zinc finger- 72.9 54 0.0012 33.0 11.6 44 461-504 59-102 (230)
196 KOG4797 Transcriptional regula 72.7 11 0.00023 34.9 6.0 29 469-497 67-95 (123)
197 PF00038 Filament: Intermediat 72.5 58 0.0013 32.5 11.8 26 456-481 224-249 (312)
198 PF09738 DUF2051: Double stran 72.3 22 0.00047 37.2 9.0 79 428-509 86-166 (302)
199 COG4372 Uncharacterized protei 72.3 63 0.0014 35.7 12.5 51 446-496 128-178 (499)
200 KOG0250 DNA repair protein RAD 72.3 40 0.00087 40.8 12.0 53 452-504 369-422 (1074)
201 PF06419 COG6: Conserved oligo 72.1 45 0.00098 37.5 12.0 60 453-512 43-102 (618)
202 PF06785 UPF0242: Uncharacteri 72.1 40 0.00086 36.4 10.9 69 434-506 75-157 (401)
203 PF01166 TSC22: TSC-22/dip/bun 72.1 6.5 0.00014 32.5 4.1 31 469-499 14-44 (59)
204 cd07596 BAR_SNX The Bin/Amphip 71.8 77 0.0017 29.1 11.6 9 446-454 122-130 (218)
205 KOG0980 Actin-binding protein 71.7 36 0.00079 40.5 11.3 72 430-501 385-456 (980)
206 PF08172 CASP_C: CASP C termin 71.2 16 0.00034 37.0 7.5 29 455-483 107-135 (248)
207 PF02403 Seryl_tRNA_N: Seryl-t 71.2 57 0.0012 28.0 10.0 50 455-504 43-95 (108)
208 PF10211 Ax_dynein_light: Axon 71.1 47 0.001 32.2 10.4 43 457-499 122-164 (189)
209 PRK11147 ABC transporter ATPas 71.0 16 0.00035 40.5 8.2 52 457-508 570-627 (635)
210 PF05377 FlaC_arch: Flagella a 71.0 27 0.00058 28.6 7.3 35 464-498 2-36 (55)
211 KOG4001 Axonemal dynein light 70.8 26 0.00056 35.6 8.8 20 349-368 120-139 (259)
212 PF04849 HAP1_N: HAP1 N-termin 70.8 20 0.00043 37.8 8.3 48 454-501 240-287 (306)
213 PF08702 Fib_alpha: Fibrinogen 70.5 96 0.0021 29.1 12.2 54 451-504 78-132 (146)
214 PF03980 Nnf1: Nnf1 ; InterPr 70.4 6.9 0.00015 33.9 4.3 32 451-482 76-107 (109)
215 PF00038 Filament: Intermediat 70.3 86 0.0019 31.3 12.4 55 454-508 81-135 (312)
216 PF04999 FtsL: Cell division p 69.8 20 0.00043 30.4 6.8 39 470-508 36-74 (97)
217 KOG0946 ER-Golgi vesicle-tethe 69.4 40 0.00087 39.9 11.0 57 455-511 650-707 (970)
218 PF05812 Herpes_BLRF2: Herpesv 69.4 7.8 0.00017 35.8 4.5 28 453-480 1-28 (118)
219 PF07558 Shugoshin_N: Shugoshi 69.4 5.3 0.00011 30.9 2.9 35 466-500 11-45 (46)
220 PF07716 bZIP_2: Basic region 69.1 14 0.00031 28.6 5.3 29 476-504 25-53 (54)
221 PF06810 Phage_GP20: Phage min 69.1 23 0.0005 33.4 7.7 38 449-486 28-68 (155)
222 COG1382 GimC Prefoldin, chaper 68.4 22 0.00049 32.8 7.2 42 448-489 63-104 (119)
223 PF09738 DUF2051: Double stran 68.4 54 0.0012 34.3 10.8 51 454-504 118-168 (302)
224 PF09728 Taxilin: Myosin-like 68.3 76 0.0016 33.0 11.9 72 439-510 55-155 (309)
225 KOG3650 Predicted coiled-coil 68.3 16 0.00036 33.3 6.2 45 460-504 61-105 (120)
226 PF12808 Mto2_bdg: Micro-tubul 68.2 14 0.0003 29.8 5.1 48 452-502 1-48 (52)
227 PF07412 Geminin: Geminin; In 67.7 27 0.00059 34.8 8.1 44 469-512 125-168 (200)
228 PF10630 DUF2476: Protein of u 67.6 18 0.00039 37.3 7.1 28 163-190 228-255 (256)
229 PF07407 Seadorna_VP6: Seadorn 67.6 7.4 0.00016 41.7 4.5 24 465-488 35-58 (420)
230 PF12999 PRKCSH-like: Glucosid 67.6 38 0.00083 33.1 9.0 32 451-482 142-173 (176)
231 cd07665 BAR_SNX1 The Bin/Amphi 67.6 36 0.00079 34.3 9.1 31 451-481 25-55 (234)
232 PF04012 PspA_IM30: PspA/IM30 67.5 42 0.0009 32.2 9.2 44 460-503 96-139 (221)
233 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.5 79 0.0017 28.6 10.5 50 458-507 69-122 (132)
234 PHA03162 hypothetical protein; 67.4 3.6 7.7E-05 38.7 2.0 28 452-479 10-37 (135)
235 PF05008 V-SNARE: Vesicle tran 67.4 36 0.00079 27.6 7.6 55 452-506 22-77 (79)
236 PF01920 Prefoldin_2: Prefoldi 67.2 17 0.00037 30.3 5.9 30 456-485 63-92 (106)
237 PF14915 CCDC144C: CCDC144C pr 67.0 53 0.0012 34.7 10.4 66 444-509 182-247 (305)
238 KOG3433 Protein involved in me 66.8 40 0.00086 33.7 9.0 49 441-489 102-150 (203)
239 PF07558 Shugoshin_N: Shugoshi 66.7 5.6 0.00012 30.8 2.6 42 436-478 3-44 (46)
240 COG1729 Uncharacterized protei 66.3 13 0.00029 38.1 6.0 49 457-506 58-106 (262)
241 KOG1924 RhoA GTPase effector D 66.1 18 0.00039 42.7 7.4 13 230-242 613-625 (1102)
242 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.0 52 0.0011 29.8 9.1 27 473-499 63-89 (132)
243 COG4942 Membrane-bound metallo 66.0 57 0.0012 35.8 10.8 36 457-492 75-110 (420)
244 cd07596 BAR_SNX The Bin/Amphip 65.9 1.1E+02 0.0024 28.1 12.0 29 446-474 108-136 (218)
245 PRK10636 putative ABC transpor 65.8 33 0.00071 38.3 9.3 52 455-506 563-621 (638)
246 COG1842 PspA Phage shock prote 65.8 43 0.00093 33.6 9.2 44 459-502 96-139 (225)
247 PF13805 Pil1: Eisosome compon 65.6 21 0.00046 37.0 7.2 28 456-483 166-193 (271)
248 PHA03155 hypothetical protein; 65.6 7.6 0.00016 35.8 3.6 25 456-480 9-33 (115)
249 TIGR03185 DNA_S_dndD DNA sulfu 65.6 57 0.0012 36.5 11.1 42 455-496 209-250 (650)
250 TIGR02231 conserved hypothetic 65.4 73 0.0016 34.7 11.6 41 465-505 127-167 (525)
251 PF09726 Macoilin: Transmembra 65.4 76 0.0016 36.7 12.2 37 445-481 478-514 (697)
252 PF00769 ERM: Ezrin/radixin/mo 65.2 78 0.0017 31.8 10.9 48 460-507 52-99 (246)
253 KOG1645 RING-finger-containing 65.1 42 0.00091 37.0 9.5 88 403-501 24-111 (463)
254 PF12777 MT: Microtubule-bindi 64.8 37 0.00081 35.2 8.9 11 410-420 183-193 (344)
255 PRK10698 phage shock protein P 64.3 1.2E+02 0.0026 30.1 11.9 39 464-502 101-139 (222)
256 smart00787 Spc7 Spc7 kinetocho 64.2 1.2E+02 0.0025 31.9 12.3 34 456-489 205-238 (312)
257 PF04728 LPP: Lipoprotein leuc 64.1 57 0.0012 26.8 7.9 38 462-499 3-40 (56)
258 PF08232 Striatin: Striatin fa 63.9 54 0.0012 30.2 8.8 35 469-503 25-59 (134)
259 PF12711 Kinesin-relat_1: Kine 63.8 44 0.00096 29.4 7.8 37 465-502 27-63 (86)
260 PRK14011 prefoldin subunit alp 63.6 38 0.00081 31.9 7.9 14 400-413 70-83 (144)
261 COG2919 Septum formation initi 63.5 74 0.0016 28.6 9.5 19 432-450 19-37 (117)
262 PF05911 DUF869: Plant protein 63.4 31 0.00068 40.2 8.8 54 456-509 93-167 (769)
263 PF00261 Tropomyosin: Tropomyo 63.2 1.6E+02 0.0035 29.0 12.9 44 457-500 171-214 (237)
264 cd07666 BAR_SNX7 The Bin/Amphi 63.2 60 0.0013 33.0 9.7 47 435-481 150-196 (243)
265 PF04859 DUF641: Plant protein 63.1 24 0.00051 33.0 6.4 42 457-498 89-130 (131)
266 PF09755 DUF2046: Uncharacteri 63.0 31 0.00067 36.5 7.9 22 457-478 43-64 (310)
267 cd07664 BAR_SNX2 The Bin/Amphi 63.0 51 0.0011 33.1 9.1 64 451-514 25-107 (234)
268 PF14645 Chibby: Chibby family 62.8 24 0.00052 32.1 6.3 39 460-498 76-114 (116)
269 PF14817 HAUS5: HAUS augmin-li 62.8 48 0.001 38.0 9.9 42 458-499 82-123 (632)
270 KOG0980 Actin-binding protein 62.4 78 0.0017 37.9 11.6 66 434-499 445-517 (980)
271 KOG2189 Vacuolar H+-ATPase V0 62.4 51 0.0011 38.8 10.1 37 470-506 93-129 (829)
272 PLN02320 seryl-tRNA synthetase 62.1 89 0.0019 35.0 11.6 47 460-506 105-153 (502)
273 PF07200 Mod_r: Modifier of ru 62.0 56 0.0012 29.6 8.6 48 440-488 41-88 (150)
274 KOG1265 Phospholipase C [Lipid 62.0 71 0.0015 38.5 11.2 70 434-503 1028-1102(1189)
275 PF01486 K-box: K-box region; 62.0 25 0.00055 30.2 6.0 25 475-499 74-98 (100)
276 KOG1318 Helix loop helix trans 61.8 16 0.00035 39.8 5.8 58 454-511 289-359 (411)
277 PF01486 K-box: K-box region; 61.8 30 0.00064 29.8 6.4 33 447-479 63-99 (100)
278 PF01166 TSC22: TSC-22/dip/bun 61.7 13 0.00029 30.8 4.0 22 456-477 22-43 (59)
279 PF13094 CENP-Q: CENP-Q, a CEN 61.7 56 0.0012 30.2 8.6 43 457-499 43-85 (160)
280 TIGR02209 ftsL_broad cell divi 61.5 54 0.0012 26.8 7.6 33 472-504 27-59 (85)
281 PF03961 DUF342: Protein of un 61.5 40 0.00087 36.1 8.7 54 454-507 347-406 (451)
282 PF05278 PEARLI-4: Arabidopsis 61.4 1.2E+02 0.0026 31.7 11.6 59 445-503 190-248 (269)
283 PF08286 Spc24: Spc24 subunit 61.2 2.8 6E-05 37.2 0.1 40 459-505 3-42 (118)
284 PF11500 Cut12: Spindle pole b 61.1 63 0.0014 31.1 9.0 55 433-487 83-137 (152)
285 COG4372 Uncharacterized protei 61.0 1.3E+02 0.0028 33.4 12.2 67 441-507 130-203 (499)
286 PRK03992 proteasome-activating 60.8 32 0.00069 36.2 7.7 45 459-503 5-49 (389)
287 PF12808 Mto2_bdg: Micro-tubul 60.7 25 0.00053 28.4 5.3 26 458-483 25-50 (52)
288 KOG0994 Extracellular matrix g 60.7 18 0.00039 44.2 6.3 59 445-503 1236-1294(1758)
289 COG4985 ABC-type phosphate tra 60.6 37 0.0008 35.2 7.7 79 413-491 163-243 (289)
290 PF05300 DUF737: Protein of un 60.4 65 0.0014 31.7 9.2 51 439-489 118-168 (187)
291 PF08606 Prp19: Prp19/Pso4-lik 59.8 20 0.00043 30.6 4.8 30 476-505 8-37 (70)
292 KOG2077 JNK/SAPK-associated pr 59.8 71 0.0015 36.9 10.4 70 442-511 344-427 (832)
293 PF12777 MT: Microtubule-bindi 59.7 25 0.00054 36.4 6.6 39 463-501 236-274 (344)
294 TIGR03185 DNA_S_dndD DNA sulfu 59.6 1.2E+02 0.0026 34.1 12.3 46 455-500 421-466 (650)
295 smart00340 HALZ homeobox assoc 59.6 20 0.00044 28.2 4.4 28 477-504 6-33 (44)
296 PF13942 Lipoprotein_20: YfhG 59.2 1.3E+02 0.0028 29.8 10.8 87 406-496 69-164 (179)
297 PF09744 Jnk-SapK_ap_N: JNK_SA 59.1 1.6E+02 0.0035 28.2 11.3 45 459-503 93-137 (158)
298 KOG1899 LAR transmembrane tyro 59.1 45 0.00097 38.7 8.8 65 438-504 128-195 (861)
299 KOG1853 LIS1-interacting prote 59.0 1.2E+02 0.0025 32.1 11.0 41 438-478 28-68 (333)
300 PF07889 DUF1664: Protein of u 58.9 1.4E+02 0.0029 27.9 10.5 58 450-507 63-120 (126)
301 PRK02224 chromosome segregatio 58.9 1.3E+02 0.0029 34.4 12.6 44 458-501 595-638 (880)
302 COG1792 MreC Cell shape-determ 58.6 29 0.00063 35.5 6.8 45 452-500 63-107 (284)
303 cd07627 BAR_Vps5p The Bin/Amph 58.6 1.6E+02 0.0035 28.6 11.5 55 446-500 106-167 (216)
304 PF11544 Spc42p: Spindle pole 58.4 86 0.0019 27.2 8.5 47 458-504 8-54 (76)
305 KOG2077 JNK/SAPK-associated pr 58.3 48 0.001 38.2 8.8 64 430-509 313-376 (832)
306 PF08826 DMPK_coil: DMPK coile 58.3 1.1E+02 0.0023 25.4 9.8 41 462-502 18-58 (61)
307 PRK02224 chromosome segregatio 58.2 1.1E+02 0.0024 35.0 11.8 9 466-474 541-549 (880)
308 PF04340 DUF484: Protein of un 58.2 36 0.00079 32.9 7.1 44 456-503 41-84 (225)
309 PF09325 Vps5: Vps5 C terminal 57.5 1E+02 0.0022 29.2 9.8 25 464-488 165-189 (236)
310 PF05557 MAD: Mitotic checkpoi 57.3 39 0.00084 38.3 8.1 48 456-503 511-586 (722)
311 PF08826 DMPK_coil: DMPK coile 57.3 1.1E+02 0.0023 25.4 8.5 36 469-504 18-53 (61)
312 PTZ00454 26S protease regulato 57.2 32 0.0007 36.7 7.1 32 460-491 27-58 (398)
313 PF15619 Lebercilin: Ciliary p 57.1 95 0.0021 30.4 9.7 34 477-510 158-191 (194)
314 PRK10722 hypothetical protein; 57.0 84 0.0018 32.5 9.5 86 406-495 115-209 (247)
315 PF13815 Dzip-like_N: Iguana/D 57.0 65 0.0014 28.8 7.9 34 469-502 80-113 (118)
316 KOG0976 Rho/Rac1-interacting s 57.0 62 0.0013 38.7 9.5 49 456-504 107-155 (1265)
317 KOG2751 Beclin-like protein [S 56.9 65 0.0014 35.7 9.3 53 446-498 155-219 (447)
318 KOG0996 Structural maintenance 56.8 1.7E+02 0.0036 36.4 13.2 140 354-512 735-877 (1293)
319 PRK11091 aerobic respiration c 56.8 1.4E+02 0.003 33.4 12.0 55 452-506 100-154 (779)
320 PF13815 Dzip-like_N: Iguana/D 56.7 42 0.00092 29.9 6.7 34 464-497 82-115 (118)
321 PF03962 Mnd1: Mnd1 family; I 56.7 1E+02 0.0022 30.0 9.7 23 450-472 105-127 (188)
322 COG2433 Uncharacterized conser 56.7 1.4E+02 0.0029 34.7 11.9 43 440-482 420-463 (652)
323 PTZ00454 26S protease regulato 56.6 37 0.0008 36.3 7.4 44 460-503 20-63 (398)
324 KOG0239 Kinesin (KAR3 subfamil 56.5 86 0.0019 36.2 10.6 48 457-504 243-290 (670)
325 KOG0976 Rho/Rac1-interacting s 56.5 55 0.0012 39.1 9.0 11 434-444 105-115 (1265)
326 KOG0977 Nuclear envelope prote 56.4 73 0.0016 36.1 9.8 44 455-498 148-191 (546)
327 KOG3564 GTPase-activating prot 56.1 95 0.0021 35.2 10.4 66 447-512 38-107 (604)
328 PF05064 Nsp1_C: Nsp1-like C-t 55.9 25 0.00054 31.5 5.2 59 455-513 26-95 (116)
329 KOG2391 Vacuolar sorting prote 55.9 53 0.0012 35.4 8.3 45 456-500 233-277 (365)
330 PF05600 DUF773: Protein of un 55.9 50 0.0011 36.6 8.4 51 451-501 442-492 (507)
331 PF10146 zf-C4H2: Zinc finger- 55.7 2.1E+02 0.0046 28.9 12.0 49 451-499 28-76 (230)
332 PRK13182 racA polar chromosome 55.5 61 0.0013 31.4 8.0 47 458-504 95-146 (175)
333 PF08912 Rho_Binding: Rho Bind 55.5 54 0.0012 28.0 6.7 33 460-492 1-33 (69)
334 PF10168 Nup88: Nuclear pore c 55.4 1E+02 0.0022 35.8 10.9 58 433-490 556-614 (717)
335 PF06637 PV-1: PV-1 protein (P 55.4 1.9E+02 0.0042 32.0 12.3 66 444-509 316-382 (442)
336 PF06428 Sec2p: GDP/GTP exchan 55.2 98 0.0021 27.7 8.7 43 458-500 11-61 (100)
337 COG1842 PspA Phage shock prote 55.1 1.4E+02 0.0029 30.1 10.6 49 460-508 104-152 (225)
338 cd00632 Prefoldin_beta Prefold 55.0 61 0.0013 28.1 7.3 45 451-495 59-103 (105)
339 PF11180 DUF2968: Protein of u 55.0 1E+02 0.0022 30.8 9.5 36 456-491 148-183 (192)
340 PF10226 DUF2216: Uncharacteri 55.0 1.1E+02 0.0025 30.6 9.8 13 491-503 109-121 (195)
341 PF05769 DUF837: Protein of un 54.9 1.7E+02 0.0037 28.5 10.9 31 463-493 71-101 (181)
342 PF15070 GOLGA2L5: Putative go 54.7 55 0.0012 37.3 8.7 56 454-509 166-221 (617)
343 TIGR00606 rad50 rad50. This fa 54.7 1.4E+02 0.0031 36.4 12.5 27 457-483 226-252 (1311)
344 PF10828 DUF2570: Protein of u 54.6 1.5E+02 0.0034 26.2 10.3 54 457-512 34-87 (110)
345 PRK10361 DNA recombination pro 54.5 1.7E+02 0.0037 32.7 12.1 19 463-481 68-86 (475)
346 PF05529 Bap31: B-cell recepto 54.4 72 0.0016 30.2 8.2 23 469-491 161-183 (192)
347 PF14916 CCDC92: Coiled-coil d 54.3 23 0.00051 29.3 4.3 42 455-499 3-44 (60)
348 PRK14140 heat shock protein Gr 54.2 78 0.0017 31.2 8.6 20 458-477 40-59 (191)
349 PRK13454 F0F1 ATP synthase sub 54.2 2E+02 0.0044 27.4 12.3 46 433-478 61-106 (181)
350 COG5293 Predicted ATPase [Gene 54.2 1.3E+02 0.0027 34.1 10.9 76 437-512 330-415 (591)
351 TIGR00634 recN DNA repair prot 54.1 64 0.0014 35.6 8.9 53 459-511 172-230 (563)
352 KOG0161 Myosin class II heavy 54.1 82 0.0018 40.5 10.6 67 437-503 1642-1708(1930)
353 PRK03947 prefoldin subunit alp 53.8 64 0.0014 29.0 7.5 10 402-411 78-87 (140)
354 KOG0288 WD40 repeat protein Ti 53.8 1.3E+02 0.0029 33.4 10.9 42 458-499 30-71 (459)
355 KOG4603 TBP-1 interacting prot 53.7 65 0.0014 32.1 7.9 22 481-502 121-142 (201)
356 KOG0933 Structural maintenance 53.6 1E+02 0.0023 37.5 10.8 20 179-198 559-578 (1174)
357 COG1196 Smc Chromosome segrega 53.2 1.3E+02 0.0029 36.2 11.9 22 110-131 53-75 (1163)
358 PRK03992 proteasome-activating 53.2 42 0.00091 35.3 7.1 42 456-497 9-50 (389)
359 KOG3335 Predicted coiled-coil 53.2 18 0.00039 35.6 4.0 51 432-488 89-139 (181)
360 COG1196 Smc Chromosome segrega 53.1 1.4E+02 0.003 36.1 12.0 8 188-195 117-124 (1163)
361 KOG0161 Myosin class II heavy 53.1 1.4E+02 0.003 38.7 12.3 22 457-478 1486-1507(1930)
362 PF05335 DUF745: Protein of un 53.0 1.1E+02 0.0023 30.2 9.3 54 450-503 62-115 (188)
363 PF08286 Spc24: Spc24 subunit 52.9 4.3 9.2E-05 36.1 -0.2 35 453-487 11-45 (118)
364 PF04136 Sec34: Sec34-like fam 52.9 1E+02 0.0023 29.0 8.9 54 457-510 23-76 (157)
365 PF13805 Pil1: Eisosome compon 52.8 1E+02 0.0022 32.2 9.5 68 439-512 132-200 (271)
366 PF04871 Uso1_p115_C: Uso1 / p 52.8 1.1E+02 0.0025 28.3 9.0 20 457-476 29-48 (136)
367 PRK13923 putative spore coat p 52.7 81 0.0018 30.8 8.3 39 455-493 111-149 (170)
368 KOG2185 Predicted RNA-processi 52.4 71 0.0015 35.4 8.7 69 441-509 399-477 (486)
369 PF04420 CHD5: CHD5-like prote 52.3 41 0.00089 31.6 6.2 45 457-501 42-91 (161)
370 PF14645 Chibby: Chibby family 52.3 59 0.0013 29.6 7.0 41 463-503 72-112 (116)
371 COG3879 Uncharacterized protei 52.1 73 0.0016 32.8 8.3 46 459-504 54-103 (247)
372 TIGR01554 major_cap_HK97 phage 51.9 95 0.0021 32.2 9.3 25 457-481 36-60 (378)
373 PF00261 Tropomyosin: Tropomyo 51.9 2.5E+02 0.0054 27.7 12.4 55 451-505 172-226 (237)
374 PF05700 BCAS2: Breast carcino 51.8 1E+02 0.0022 30.3 9.1 17 480-496 179-195 (221)
375 KOG2483 Upstream transcription 51.8 34 0.00073 34.7 5.9 35 451-485 101-135 (232)
376 KOG0971 Microtubule-associated 51.8 1.2E+02 0.0026 36.8 10.8 44 458-501 1008-1051(1243)
377 KOG0804 Cytoplasmic Zn-finger 51.8 78 0.0017 35.4 8.9 24 431-454 371-394 (493)
378 KOG4643 Uncharacterized coiled 51.7 1.5E+02 0.0032 36.3 11.6 67 433-499 372-452 (1195)
379 KOG2010 Double stranded RNA bi 51.5 46 0.001 35.9 7.0 50 463-512 148-198 (405)
380 PF09728 Taxilin: Myosin-like 51.5 89 0.0019 32.5 9.0 52 456-507 245-296 (309)
381 KOG1103 Predicted coiled-coil 51.4 96 0.0021 34.0 9.3 65 433-500 113-177 (561)
382 PRK14474 F0F1 ATP synthase sub 51.2 2.7E+02 0.0059 28.1 12.1 46 433-478 35-80 (250)
383 PRK15396 murein lipoprotein; P 51.2 1.1E+02 0.0023 26.5 7.9 47 456-502 26-72 (78)
384 PF15188 CCDC-167: Coiled-coil 51.0 60 0.0013 28.5 6.5 27 467-493 41-67 (85)
385 PF11068 YlqD: YlqD protein; 51.0 1.7E+02 0.0037 27.3 9.9 16 488-503 65-80 (131)
386 COG4420 Predicted membrane pro 51.0 56 0.0012 32.6 7.0 66 439-509 109-174 (191)
387 COG3937 Uncharacterized conser 50.9 76 0.0017 29.2 7.3 19 486-504 86-104 (108)
388 PF10205 KLRAQ: Predicted coil 50.9 1.5E+02 0.0032 27.0 9.1 38 467-504 31-68 (102)
389 PF13874 Nup54: Nucleoporin co 50.7 83 0.0018 28.9 7.8 50 457-506 74-123 (141)
390 PF06103 DUF948: Bacterial pro 50.7 1.5E+02 0.0032 24.8 8.8 38 457-494 28-65 (90)
391 PF15619 Lebercilin: Ciliary p 50.5 2.6E+02 0.0056 27.5 12.0 34 448-481 74-108 (194)
392 PF04899 MbeD_MobD: MbeD/MobD 50.4 1.6E+02 0.0034 25.0 8.9 26 460-485 33-58 (70)
393 PF05667 DUF812: Protein of un 50.3 81 0.0018 35.9 9.1 42 457-498 337-378 (594)
394 PRK09174 F0F1 ATP synthase sub 50.2 2.6E+02 0.0057 27.5 12.1 45 433-477 83-127 (204)
395 PF09789 DUF2353: Uncharacteri 50.1 1.3E+02 0.0028 32.1 9.9 45 458-502 68-112 (319)
396 PF13166 AAA_13: AAA domain 50.1 1.9E+02 0.0041 32.2 11.8 48 457-504 405-452 (712)
397 PRK01156 chromosome segregatio 49.9 2.2E+02 0.0049 32.9 12.6 8 413-420 148-155 (895)
398 PF06210 DUF1003: Protein of u 49.8 84 0.0018 28.3 7.5 50 439-493 55-104 (108)
399 COG2919 Septum formation initi 49.7 73 0.0016 28.6 7.1 36 470-505 51-86 (117)
400 smart00435 TOPEUc DNA Topoisom 49.7 59 0.0013 35.4 7.6 22 491-512 344-365 (391)
401 PF09789 DUF2353: Uncharacteri 49.7 93 0.002 33.1 8.8 21 460-480 91-111 (319)
402 PF15035 Rootletin: Ciliary ro 49.7 92 0.002 30.3 8.2 51 457-507 59-112 (182)
403 PF02050 FliJ: Flagellar FliJ 49.6 1.5E+02 0.0031 24.4 9.5 43 453-495 50-92 (123)
404 KOG1318 Helix loop helix trans 49.1 1.1E+02 0.0024 33.7 9.5 28 483-510 297-324 (411)
405 PF11853 DUF3373: Protein of u 48.9 17 0.00037 40.4 3.5 29 477-505 32-60 (489)
406 TIGR01069 mutS2 MutS2 family p 48.7 1.1E+02 0.0023 35.7 9.9 12 108-119 204-215 (771)
407 cd07429 Cby_like Chibby, a nuc 48.6 37 0.00079 31.0 5.0 25 462-486 79-103 (108)
408 TIGR00606 rad50 rad50. This fa 48.5 1.8E+02 0.0038 35.7 12.0 42 458-499 891-932 (1311)
409 PF15030 DUF4527: Protein of u 48.3 2.2E+02 0.0048 29.8 10.9 43 441-483 44-86 (277)
410 PRK10963 hypothetical protein; 48.1 67 0.0015 31.5 7.2 41 458-502 40-80 (223)
411 PF10168 Nup88: Nuclear pore c 48.0 2E+02 0.0043 33.5 11.8 44 458-501 561-604 (717)
412 PF09486 HrpB7: Bacterial type 47.9 1.2E+02 0.0026 29.2 8.6 51 453-503 77-127 (158)
413 PF12711 Kinesin-relat_1: Kine 47.9 1.1E+02 0.0023 27.1 7.5 36 467-504 49-84 (86)
414 PRK00409 recombination and DNA 47.9 1.1E+02 0.0023 35.8 9.7 11 108-118 209-219 (782)
415 PF12999 PRKCSH-like: Glucosid 47.9 91 0.002 30.6 7.9 20 484-503 154-173 (176)
416 KOG0971 Microtubule-associated 47.4 2.1E+02 0.0046 34.9 11.8 63 437-499 283-355 (1243)
417 COG1340 Uncharacterized archae 47.4 2.2E+02 0.0048 30.1 11.0 61 437-503 29-89 (294)
418 KOG0964 Structural maintenance 47.3 2.3E+02 0.0051 34.7 12.2 92 413-504 388-488 (1200)
419 PF10482 CtIP_N: Tumour-suppre 47.3 1.4E+02 0.003 28.0 8.4 47 457-503 16-62 (120)
420 PF07989 Microtub_assoc: Micro 47.2 1E+02 0.0023 26.1 7.2 48 457-504 23-71 (75)
421 PF07795 DUF1635: Protein of u 46.8 1.2E+02 0.0026 30.8 8.7 40 441-480 19-58 (214)
422 PF09730 BicD: Microtubule-ass 46.8 1.8E+02 0.0039 34.1 11.2 23 481-503 95-117 (717)
423 KOG4378 Nuclear protein COP1 [ 46.7 1.1E+02 0.0025 34.8 9.3 34 474-507 631-667 (673)
424 PF15556 Zwint: ZW10 interacto 46.6 2.7E+02 0.0059 28.6 11.1 59 441-499 113-171 (252)
425 KOG1853 LIS1-interacting prote 46.6 1.7E+02 0.0037 30.9 10.0 16 453-468 110-125 (333)
426 TIGR02231 conserved hypothetic 46.6 2.8E+02 0.0061 30.3 12.2 48 457-504 126-173 (525)
427 PLN02320 seryl-tRNA synthetase 46.6 1.6E+02 0.0035 33.0 10.5 18 480-497 141-158 (502)
428 TIGR02977 phageshock_pspA phag 46.5 2.9E+02 0.0063 27.0 11.6 29 467-495 104-132 (219)
429 PF13935 Ead_Ea22: Ead/Ea22-li 46.3 2.3E+02 0.005 26.1 9.9 29 453-481 79-109 (139)
430 PF15397 DUF4618: Domain of un 46.3 2.5E+02 0.0054 29.2 11.1 33 449-481 75-107 (258)
431 PF10212 TTKRSYEDQ: Predicted 46.2 1.7E+02 0.0036 33.2 10.5 27 114-142 224-252 (518)
432 PF07334 IFP_35_N: Interferon- 46.1 28 0.00062 30.0 3.7 23 485-507 2-24 (76)
433 PF03961 DUF342: Protein of un 46.1 1.1E+02 0.0023 32.9 8.8 33 470-502 376-408 (451)
434 PF13874 Nup54: Nucleoporin co 46.0 1.6E+02 0.0034 27.1 8.8 45 456-500 52-96 (141)
435 PF09727 CortBP2: Cortactin-bi 45.9 3.2E+02 0.007 27.3 12.3 73 434-508 94-181 (192)
436 PRK13182 racA polar chromosome 45.7 1.2E+02 0.0026 29.4 8.3 52 457-508 87-143 (175)
437 PRK03947 prefoldin subunit alp 45.6 97 0.0021 27.9 7.3 44 453-503 4-47 (140)
438 TIGR02338 gimC_beta prefoldin, 45.6 99 0.0021 27.1 7.1 16 487-502 85-100 (110)
439 KOG3758 Uncharacterized conser 45.5 1.9E+02 0.0041 33.6 10.9 89 423-511 37-134 (655)
440 PF10212 TTKRSYEDQ: Predicted 45.3 1E+02 0.0022 34.9 8.7 57 446-502 453-513 (518)
441 PF03980 Nnf1: Nnf1 ; InterPr 45.1 1.1E+02 0.0025 26.5 7.4 32 473-504 77-108 (109)
442 PF10359 Fmp27_WPPW: RNA pol I 44.9 59 0.0013 35.5 6.8 13 355-367 88-100 (475)
443 KOG2391 Vacuolar sorting prote 44.8 1.8E+02 0.0039 31.6 10.0 31 464-494 248-278 (365)
444 KOG4657 Uncharacterized conser 44.8 3.5E+02 0.0076 28.1 11.6 11 493-503 96-106 (246)
445 PF04325 DUF465: Protein of un 44.8 85 0.0019 24.1 5.9 46 460-505 4-49 (49)
446 KOG0249 LAR-interacting protei 44.6 97 0.0021 36.6 8.6 57 453-510 208-264 (916)
447 KOG0933 Structural maintenance 44.5 2.2E+02 0.0048 35.0 11.6 8 357-364 645-652 (1174)
448 PF10224 DUF2205: Predicted co 44.5 89 0.0019 27.1 6.5 40 455-494 30-69 (80)
449 cd07648 F-BAR_FCHO The F-BAR ( 44.3 2.9E+02 0.0062 27.3 10.9 53 457-512 152-206 (261)
450 PF08703 PLC-beta_C: PLC-beta 44.3 3.3E+02 0.0072 27.0 11.7 67 436-502 8-79 (185)
451 PF09403 FadA: Adhesion protei 44.2 2.7E+02 0.0059 26.0 11.2 70 439-510 38-117 (126)
452 PF07407 Seadorna_VP6: Seadorn 44.0 64 0.0014 35.0 6.6 12 457-468 48-59 (420)
453 PF05812 Herpes_BLRF2: Herpesv 43.9 34 0.00074 31.7 4.1 24 478-501 5-28 (118)
454 PHA03155 hypothetical protein; 43.9 29 0.00062 32.1 3.6 22 478-499 10-31 (115)
455 PF04065 Not3: Not1 N-terminal 43.8 2.1E+02 0.0045 29.2 9.9 59 451-509 125-189 (233)
456 PF02994 Transposase_22: L1 tr 43.7 87 0.0019 33.2 7.7 48 459-506 141-188 (370)
457 TIGR03007 pepcterm_ChnLen poly 43.7 2.7E+02 0.0058 29.8 11.3 12 264-275 140-151 (498)
458 KOG0243 Kinesin-like protein [ 43.7 3.3E+02 0.0071 33.5 12.8 60 441-500 441-507 (1041)
459 PRK09343 prefoldin subunit bet 43.7 1.2E+02 0.0026 27.4 7.5 29 474-502 76-104 (121)
460 KOG4593 Mitotic checkpoint pro 43.7 1.4E+02 0.003 34.9 9.6 62 442-503 485-579 (716)
461 PHA03161 hypothetical protein; 43.5 1.5E+02 0.0033 28.7 8.4 25 458-482 57-81 (150)
462 PRK14127 cell division protein 43.5 64 0.0014 29.4 5.7 41 455-495 30-70 (109)
463 PF13935 Ead_Ea22: Ead/Ea22-li 43.3 1.8E+02 0.0039 26.8 8.7 47 457-503 92-139 (139)
464 PRK14160 heat shock protein Gr 43.3 1.3E+02 0.0028 30.2 8.4 41 459-499 58-98 (211)
465 cd07667 BAR_SNX30 The Bin/Amph 43.0 1.7E+02 0.0037 29.9 9.3 63 448-513 153-217 (240)
466 COG3167 PilO Tfp pilus assembl 42.9 92 0.002 31.5 7.2 50 453-506 47-96 (211)
467 PF14073 Cep57_CLD: Centrosome 42.9 2.2E+02 0.0048 28.2 9.6 68 437-507 84-151 (178)
468 PRK14160 heat shock protein Gr 42.9 1.8E+02 0.0039 29.3 9.2 59 454-512 60-118 (211)
469 PRK00409 recombination and DNA 42.9 2E+02 0.0044 33.6 11.0 69 439-507 504-572 (782)
470 PF14389 Lzipper-MIP1: Leucine 42.8 1.9E+02 0.004 25.1 8.2 57 450-506 3-84 (88)
471 COG1340 Uncharacterized archae 42.7 2.9E+02 0.0062 29.3 11.0 67 434-506 26-92 (294)
472 PF10883 DUF2681: Protein of u 42.7 70 0.0015 28.2 5.7 34 474-507 21-54 (87)
473 PF05701 WEMBL: Weak chloropla 42.6 3.4E+02 0.0074 30.1 12.2 95 414-508 323-418 (522)
474 PRK14872 rod shape-determining 42.4 59 0.0013 34.7 6.1 38 462-499 57-97 (337)
475 cd07429 Cby_like Chibby, a nuc 42.3 44 0.00096 30.5 4.5 28 475-502 71-98 (108)
476 KOG0995 Centromere-associated 42.3 2.8E+02 0.0061 31.9 11.5 75 432-506 274-362 (581)
477 PHA03162 hypothetical protein; 42.1 31 0.00067 32.7 3.6 22 478-499 15-36 (135)
478 PRK11546 zraP zinc resistance 42.0 1.4E+02 0.003 28.5 7.9 67 443-509 49-115 (143)
479 PF14817 HAUS5: HAUS augmin-li 41.8 2.3E+02 0.0049 32.8 11.0 69 443-511 74-142 (632)
480 PF10779 XhlA: Haemolysin XhlA 41.5 1.7E+02 0.0037 24.0 7.5 46 454-499 5-50 (71)
481 PF06698 DUF1192: Protein of u 41.5 84 0.0018 26.0 5.6 34 457-490 23-56 (59)
482 PF05911 DUF869: Plant protein 41.5 2.2E+02 0.0047 33.7 10.9 70 444-513 613-696 (769)
483 PF12128 DUF3584: Protein of u 41.4 3.5E+02 0.0077 33.0 13.0 95 415-509 638-733 (1201)
484 PRK12705 hypothetical protein; 41.4 3.4E+02 0.0074 30.6 12.0 90 413-502 46-135 (508)
485 KOG0249 LAR-interacting protei 41.3 1.3E+02 0.0029 35.6 9.0 66 446-513 207-272 (916)
486 PF11853 DUF3373: Protein of u 41.3 26 0.00056 39.1 3.5 41 446-486 22-62 (489)
487 PF05600 DUF773: Protein of un 41.2 1.3E+02 0.0029 33.5 8.8 54 454-507 431-484 (507)
488 KOG2010 Double stranded RNA bi 41.2 1.5E+02 0.0033 32.2 8.8 54 454-507 153-206 (405)
489 PF07334 IFP_35_N: Interferon- 41.1 56 0.0012 28.3 4.7 35 478-512 2-36 (76)
490 KOG0447 Dynamin-like GTP bindi 41.0 65 0.0014 37.3 6.5 52 454-509 225-276 (980)
491 PF14362 DUF4407: Domain of un 41.0 3.9E+02 0.0085 26.9 11.7 75 433-507 111-213 (301)
492 PRK04654 sec-independent trans 41.0 2.6E+02 0.0055 28.5 10.0 79 419-498 19-97 (214)
493 PRK13923 putative spore coat p 41.0 1.5E+02 0.0033 29.0 8.2 53 453-505 57-140 (170)
494 KOG2072 Translation initiation 41.0 3.4E+02 0.0073 32.9 12.1 98 412-511 588-705 (988)
495 TIGR02680 conserved hypothetic 40.9 2.7E+02 0.006 34.5 12.1 78 434-511 276-361 (1353)
496 PF04201 TPD52: Tumour protein 40.8 84 0.0018 30.6 6.4 39 461-499 28-66 (162)
497 PF04340 DUF484: Protein of un 40.8 55 0.0012 31.7 5.3 35 478-512 42-76 (225)
498 KOG4360 Uncharacterized coiled 40.7 1.2E+02 0.0026 34.5 8.4 58 455-512 205-262 (596)
499 PF03915 AIP3: Actin interacti 40.7 3E+02 0.0065 30.3 11.3 67 441-507 199-277 (424)
500 PF08738 Gon7: Gon7 family; I 40.7 88 0.0019 28.3 6.1 48 453-505 52-100 (103)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.41 E-value=1.1e-12 Score=103.65 Aligned_cols=63 Identities=38% Similarity=0.500 Sum_probs=58.5
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
.|+|+.+|+++||+||+++|+||++|+.+||.+|+.|+.+|..|..++..|+.++..|..++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999888888777653
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.31 E-value=1.2e-11 Score=97.68 Aligned_cols=61 Identities=39% Similarity=0.614 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
+.|+.+|+++||+||+++|+||++|+.+||.+|..|+.+|..|..++..|+.++..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4688999999999999999999999999999999999999999999999999999998887
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.29 E-value=2.7e-11 Score=119.50 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=74.8
Q ss_pred hHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 423 EKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 423 ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.+|.+|. .++|-.||+||||++||.+|.|||++++++|.+|..|+.||..|..++..|+.++..|+.+|.+|..+|+.+
T Consensus 59 ~RL~HLS-~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 59 RRLDHLS-WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HhhcccC-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455554 689999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HH
Q 010222 503 EQ 504 (514)
Q Consensus 503 EQ 504 (514)
.|
T Consensus 138 ~~ 139 (292)
T KOG4005|consen 138 RQ 139 (292)
T ss_pred HH
Confidence 55
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.08 E-value=1.7e-10 Score=123.30 Aligned_cols=64 Identities=34% Similarity=0.529 Sum_probs=61.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
||..|||+|||||..||+|||+|+.-||.+++.|..||..|+++...|++++..|.+||..||.
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 7888999999999999999999999999999999999999999999999999999999999873
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.08 E-value=6e-10 Score=86.04 Aligned_cols=53 Identities=38% Similarity=0.572 Sum_probs=48.8
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
.|+++.||+ +||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.+
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367888888 99999999999999999999999999999999999999988764
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.94 E-value=1e-09 Score=115.94 Aligned_cols=69 Identities=28% Similarity=0.379 Sum_probs=61.0
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
..-||+||+|+|.+|||.||.|||+||+.||.+|....+||.+|..++..|+.++..|..+.+.|...+
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 356999999999999999999999999999999999999999999999998887777777766665544
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.84 E-value=4.4e-09 Score=106.37 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=49.2
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
-.||.-|++||||+|+.+|+|||+|+.+||.+|..|++.|..|-++|..|+.-
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL 341 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL 341 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998887653
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.18 E-value=1.9e-08 Score=85.16 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=56.9
Q ss_pred HHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
.|.++.+ ..|.+--..+-|.+||.++||.+|+++|.||+.++.+||.++..|+.+...|..++..++.+...+..++.
T Consensus 12 ~efn~~L--~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~ 89 (92)
T PF03131_consen 12 REFNRLL--RGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLE 89 (92)
T ss_dssp HHHHHHC--TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHH
T ss_pred HHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 33443334456999999999999999999999999999999998888888777777766655444443333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.83 E-value=6.1e-05 Score=75.89 Aligned_cols=52 Identities=35% Similarity=0.516 Sum_probs=44.3
Q ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKR-ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 434 KR~KR-iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
.|+.| .++||++|.+||.||.++|..||.+|..|..+|..|...+..|.+..
T Consensus 205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 34444 68999999999999999999999999999999999988887765533
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.52 E-value=0.00055 Score=69.94 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=49.1
Q ss_pred ccChHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRIL-ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 430 l~DpKR~KRiL-kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
.+++|+.+|+- .|..+|.|.|+||++-.++|+.+++.|+.+|.+|+.|+..|+++++-|+
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666644 5666799999999999999999999999999999999988887665554
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.36 E-value=0.0014 Score=60.48 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=48.5
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
-.|..||-||||=.|+-+|-|+.+.-.+||.+-..|.++...|..++..+. .|...|+.+.++|..
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~-------~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR-------RELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 368889999999999999999999888888777666666666655555554 455555666655543
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.20 E-value=0.00058 Score=75.28 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=55.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
-+=+||.=|||++||+.|+||..-|..||..|..|+.|..+|..+ ...+..+..++|++|..|-+.+
T Consensus 489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999999998887644 4455667778888887776653
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.17 E-value=0.0022 Score=64.28 Aligned_cols=63 Identities=22% Similarity=0.372 Sum_probs=53.3
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
..|++-..|.-+|=++|+|||.+.|+-..++.++|..|+.||..|+.++..|++++..|..-.
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666678999999999999999999999999999999999999998888766665433
No 14
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.51 E-value=0.012 Score=52.33 Aligned_cols=50 Identities=30% Similarity=0.413 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+.+||.++..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999999998876
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.41 E-value=0.015 Score=52.26 Aligned_cols=50 Identities=28% Similarity=0.418 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+..||.++..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999998744
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.90 E-value=0.073 Score=44.55 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+-++.||.||+.+-..+..|..++..|+.++..|..+|.+|+...+.|.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35678888888887777777777777777777777777777777666654
No 17
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.87 E-value=0.15 Score=51.93 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=69.4
Q ss_pred HHhhhhccChHHHHHHHHhHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 424 KLAEIALTDPKRAKRILANRQSA--ARSKERKMRY-ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 424 kLaElAl~DpKR~KRiLkNRESA--qRSReRKKqY-LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.|+.-...+.||+|-..+-.-+- ++.|+-+++| |.+|+.+-+.|+.||..|+++...|-.+++.|..+..+|++.|.
T Consensus 63 HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 63 HLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred ccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45544466788888776543332 3445556666 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 010222 501 AMEQQAQLR 509 (514)
Q Consensus 501 aLEQQaQLr 509 (514)
.+.++.+..
T Consensus 143 ~~~~~~~~~ 151 (292)
T KOG4005|consen 143 ELKQQQQHN 151 (292)
T ss_pred hhHHHHHHh
Confidence 999887754
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.63 E-value=0.59 Score=45.83 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
+-+.+++..+..|+.||.+|..+++.++.++..|..+|..++..
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555443
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.46 E-value=0.26 Score=40.94 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.|+.|=..++.|+.||..|..++..++.+...|...|..-+.||++|=..
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666777788888888888888888888888888888888776443
No 20
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.41 E-value=0.73 Score=43.84 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=59.5
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.+.++++.+.+.+..-+.-.......|.+++.-++.|+.|...|.-++..++.++..|..||++|-.|.-..
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666667777889999999999999999999999999999999999999999997443
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.10 E-value=0.3 Score=46.80 Aligned_cols=50 Identities=28% Similarity=0.398 Sum_probs=39.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEH---KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~---KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.||+.|.. ..+.|+.||..|..+++.|+.++..|..||..|+.+++.+++
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 477788888888888888888888888888888888877765
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.08 E-value=0.58 Score=45.88 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
-.+...+|+.++..+..+..+|..++..|++++..+.+|+..|+.+++.+....+++
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778889999999999999999999999999999999999999998888766554
No 23
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=94.01 E-value=0.27 Score=40.33 Aligned_cols=51 Identities=29% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+.|.+||.++..++.-..+|...+...++++..|..+.+.|..||..++..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 578999999999999999999999999999999999999999999998744
No 24
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.84 E-value=0.24 Score=54.10 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+.|||+++..|+.|...|.++...+++++..|..||+.|+.+++++.+
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999999999999999999999999966543
No 25
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=93.81 E-value=0.21 Score=45.44 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
..+.+||.++.+|-++...|++++..|-.++..|..||..||.||..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35789999999999999999999999999999999999999999976
No 26
>PRK00295 hypothetical protein; Provisional
Probab=93.63 E-value=0.47 Score=39.13 Aligned_cols=48 Identities=25% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.|.+||.++..++.-+..|...+...++++..|..+.+.|..||..++
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 499999999999999999999999999999999999999999998876
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.60 E-value=1.2 Score=41.74 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=63.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
=++-+.....|++.+-+--+-+++.+..|+.++..+..+...|...+..+..+...|..+..+.+.+++.|+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999999999999999999999888888888888888887765
No 28
>PRK02793 phi X174 lysis protein; Provisional
Probab=93.49 E-value=0.43 Score=39.73 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++|.+||.++..++.-+.+|...++..++++..|..+.+.|+.||..++.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999999999999999999999999999988764
No 29
>PRK00736 hypothetical protein; Provisional
Probab=93.40 E-value=0.48 Score=39.05 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++|.+||.++..++.-+..|...+..-++++..|..+.+.|..||..++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45999999999999999999999999999999999999999999987753
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.38 E-value=0.23 Score=38.27 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 466 ~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+|+.+...|......|..++..|..||..|+.+++.|....+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355556666666666666677777777777777777655443
No 31
>PRK04325 hypothetical protein; Provisional
Probab=93.27 E-value=0.49 Score=39.60 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+.|.+||.+|..++.-+..|...|+.-++++..|..+.+.|..||..++.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34999999999999999999999999999999999999999999988753
No 32
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=93.25 E-value=1.7 Score=37.52 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=58.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+|+.+.+.+=+++-.-|.-+.+-..+||.+|+.|......|..++......+..|..-|.++..+|...
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666999999999999999999999999999999999999999999754
No 33
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.24 E-value=0.66 Score=38.61 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+..||.||..|-.....|..+...|..+...+..|+..|+.+.+.-.+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999998766553
No 34
>PRK02119 hypothetical protein; Provisional
Probab=93.17 E-value=0.51 Score=39.45 Aligned_cols=50 Identities=22% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.+.|.+||.++..++.-..+|...|+.-++++..|..+.+.|..||..++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999999999998875
No 35
>PRK04406 hypothetical protein; Provisional
Probab=92.92 E-value=0.57 Score=39.47 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
++|.+||.++..++.-+..|...+...++++..|..+.+.|+.||..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999999998887765
No 36
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.85 E-value=1.1 Score=37.70 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|.-|+.+|..|+.+|..|..+...|+.++..|..+-...+.||..|
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444444444444444444444444443
No 37
>PRK11637 AmiB activator; Provisional
Probab=92.57 E-value=1.8 Score=45.53 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+.....-...+..|+.++..++.+...+..++..++.+...+..+..+++.+|..++.
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666666666666666666666666666666666666666655443
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=92.56 E-value=1 Score=39.65 Aligned_cols=53 Identities=28% Similarity=0.371 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 456 YISELEHKVQTLQTEATTL--SAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 456 YLeELE~KVq~LqtENssL--s~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
.+.+++.++..++++...| +..+..|+-+...+.-+-++|..+|+.++.+..|
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666 6666666666666777777777777766655543
No 39
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.38 E-value=0.84 Score=39.25 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
++|..++..||.....|..++...+.++..|..||.-|..-|..|-....+
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 568889999999999999999999999999999999999999988665443
No 40
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=0.88 Score=38.95 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
|.-|.-+|+.|..+|+.|..+...++.....|..||..||.+-..
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777777777777777777777777777777765443
No 41
>PRK00846 hypothetical protein; Provisional
Probab=91.91 E-value=0.96 Score=38.69 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.++|.+||.++...+.-...|...++..++++..|..+.+.|+.||..++.
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 367899999999999999999999999999999999999999999998863
No 42
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.73 E-value=3.8 Score=37.28 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 435 R~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
...|=+..|+.......++..-++.|+..++.|+.++..+..++..++.+...|..+++.+...+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666666666666666666655555555555555444443
No 43
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.59 E-value=0.0084 Score=62.88 Aligned_cols=62 Identities=29% Similarity=0.316 Sum_probs=54.7
Q ss_pred ccChHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAAR---SKERKMRYISELEHKVQTLQ-TEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqR---SReRKKqYLeELE~KVq~Lq-tENssLs~QLtlLQre~~sL~tE 491 (514)
..+.|+..|..+|+.+|++ +|.||+.+..+|+.+|+.|+ .++..|..++..|+.+.+.|..+
T Consensus 150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~ 215 (395)
T KOG1414|consen 150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKE 215 (395)
T ss_pred cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHH
Confidence 3577999999999999999 99999999999999999999 98888888888888776666544
No 44
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.23 E-value=1.3 Score=38.30 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
-++.||.||++.-..+.-|.-+|..|..++..|..|+
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~ 41 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766644444444444444444444444433
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.03 E-value=2.1 Score=48.78 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
-+-+..+.++|+.|...|+.++...+.++..|+.|..+|+..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777777777777777777777777666654
No 46
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.96 E-value=4.1 Score=40.10 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+|+.+++.|+.|...|..++..++.....+..+..+|+.+++.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 47
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.92 E-value=2.1 Score=35.60 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..++-|.+++...+.++..|..+-.....+....-.++.+|+.+++.|.++
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777666666666666666677777777777665
No 48
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.81 E-value=2.6 Score=45.67 Aligned_cols=73 Identities=29% Similarity=0.333 Sum_probs=60.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
|+++-+.++=+.-.++....++....||.+++.+++++.++..++...+.++..+...+..+..+|+.|+.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5566555555555555666677788999999999999999999999999999999999999999999887655
No 49
>PRK11637 AmiB activator; Provisional
Probab=90.66 E-value=3.8 Score=43.19 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=31.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATT-------LSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENss-------Ls~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
..+......+..+...+.+++.+...|+.+..+ |..++...+.++..|..+...|...|..++
T Consensus 184 ~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555554444 444444444444555555555555555443
No 50
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.62 E-value=1.5 Score=39.25 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
+|=.++..|+.....|..++..|+.+...|..||.+|+.+-+.|...+.-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999888776543
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.29 E-value=5.5 Score=40.33 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+..|+..+++++.+..+|..++..|..+...|..+...|+.++..++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554443
No 52
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.19 E-value=1.1 Score=34.67 Aligned_cols=42 Identities=29% Similarity=0.408 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.||+....|......|..+...|.+++..|.+|...|+.+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 489999999999999999999999999999999999998875
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.17 E-value=6.7 Score=39.76 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=47.3
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ---------RDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQ---------re~~sL~tENkELK~RLQa 501 (514)
.-+|-++++..-.+.+.+.-.-++.-+++|+.+|..++.+...++.++..++ +++..|..|...++.++.+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777777777777777788888888777777777776654 3444444455555555444
Q ss_pred HH
Q 010222 502 ME 503 (514)
Q Consensus 502 LE 503 (514)
|+
T Consensus 108 le 109 (239)
T COG1579 108 LE 109 (239)
T ss_pred HH
Confidence 44
No 54
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.16 E-value=2.9 Score=35.87 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
-++.||.||++.-.-.+-|.-+++.|..++..|..|...++...++|+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 345566666654444444444444444444444444444444443333
No 55
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.14 E-value=6.3 Score=38.79 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
+..-++.+..|+.+++.|+..|..|...++.++++...|..+..++..-
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555566556555555555555555555555554433
No 56
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.03 E-value=6.9 Score=38.06 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=42.8
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
.+-..+++.+++-+..+.+=..-+..+..++.++..|+-|+..|..++..++++...|..
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777766666777777777777777777777777777766666653
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.95 E-value=2.1 Score=42.27 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
.|++|+..-+.|..||..|...+..+..-+..|..|+..|+.++..+.+-.+...+|
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l 65 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKAL 65 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778788888888888888888888888888888888888887776655555443
No 58
>PRK10698 phage shock protein PspA; Provisional
Probab=88.91 E-value=6 Score=38.98 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010222 446 AARSKERKMR---YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGII 513 (514)
Q Consensus 446 AqRSReRKKq---YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL~ 513 (514)
|+..=.+|+. .+..|+.++...+.....|..++..|+..+..+.++...|..|.+.-+.+.++.+++.
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~ 157 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD 157 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3443444444 4667888889999999999999999999999999999999999999998888887763
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.79 E-value=6.9 Score=42.76 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=40.4
Q ss_pred HHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 415 ELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 415 E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
+.+-|-.+.+|++.+ |++-|+.+.+..-+-.-+-=++.+.++|..++.|+.||..|..++...+
T Consensus 12 dqr~~~~~~~laq~~----k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~ 75 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCE----KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREE 75 (459)
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555443 5556655444433333333456678899999999999999888776643
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.74 E-value=2.6 Score=36.52 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
-|.-|.-+|+.|+.+|..|..++..+......|..||..||.....-
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777666666666777777777765544
No 61
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=88.56 E-value=3.1 Score=35.15 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSV--------GLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~--------sL~tENkELK~RLQaLEQQaQ 507 (514)
+.++|..+..|+.||=.|+-+|-.|+.... .+..+|-+||..+..|....+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~ 60 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQ 60 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999888888877765544 346666667666666655443
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.34 E-value=2.8 Score=42.00 Aligned_cols=49 Identities=10% Similarity=0.281 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
-+.+|..+++.|+.|+.+|+.+++.++.++..|....++|-..|..+.+
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999999999988887543
No 63
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.22 E-value=8.6 Score=37.45 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTL-------QTEATTLSAQLTLLQRD 484 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~L-------qtENssLs~QLtlLQre 484 (514)
|-+-++.+|....+-+..+.+++.+...||.++..- +.+...|..++..|+++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555544 44444444444444444
No 64
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.18 E-value=2.6 Score=36.02 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
++|.+||.++..-+.-..+|...++..+.....+..+.+-|-.|+..++.++
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999999887654
No 65
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=87.95 E-value=5.4 Score=38.76 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
.-.+.+..|+.++..++.....|..++..|++++..+.+....|+.|.+....+.++..++
T Consensus 96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567788889999999999999999999999999999999999998877776666554
No 66
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.38 E-value=12 Score=34.08 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+..++.|+.++..++.++..+..+...++.++..+...++.++..++.
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444333
No 67
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.20 E-value=1.8 Score=46.64 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 443 RESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
-+.|+-.|+|-.+.-...|..++.+..|...|+++++.++....+|..|+..||.-+..||...
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~h 289 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADH 289 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3567888889899889999999999999999999999999999999999999999998888643
No 68
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=87.02 E-value=0.82 Score=43.92 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTL---LQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtl---LQre~~sL~tENkELK~RL 499 (514)
|+++|.|+++.-.+|.-|..+|.+ |+.+++.|+.|.++||++|
T Consensus 2 LeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988888833 3444444444555555444
No 69
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.98 E-value=8.1 Score=43.31 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
+++-..........-+..+++|+..+...+.++..|..++..+......|.
T Consensus 155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~ 205 (546)
T PF07888_consen 155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELK 205 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444544444444444444444444433333333
No 70
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.97 E-value=3.4 Score=41.35 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
..+++.+.+++.+++++..|..|.+.++++++.|..|+..|+.+++
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344444555555556666666666666666666666666666654
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.75 E-value=2.7 Score=38.98 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQL--TLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QL--tlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++.+.+|+..+..|+.|...|...+ ..|..+...|..|+.+|..+|+.|..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666666554 34566777777777777777777765
No 72
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.73 E-value=3.2 Score=42.85 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
..+.+.+||.+...|..|...|..+...++
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 73
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.65 E-value=12 Score=36.31 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~s 487 (514)
+.+++.++..|+.+...+..++...+++...
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 74
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.62 E-value=4.4 Score=37.58 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL---TNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL---~tENkELK~RLQaLEQQa 506 (514)
.-|..|.++++.|+.+...+..++..+....... ...+..|..+|+.||.++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeel 89 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHH
Confidence 3344444444444444444444444433322222 223334555555555443
No 75
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=86.62 E-value=15 Score=33.26 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=34.5
Q ss_pred cchHHHhhhcchhH-HhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 411 FSGAELKKIMANEK-LAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 411 ~s~~E~KKim~~ek-LaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
.|-.|++.++.++. +.++... --.++.+...++....+-+.=.+...+++.++..+..+...+..++..|+.++..+.
T Consensus 4 lS~~eL~~Ll~d~~~l~~~v~~-l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 4 LSTEELQELLSDEEKLDAFVKS-LPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp -TTHHHHHHHHH-HHHHHHGGG-GS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777776664 3333321 112344444444444444443344444444444444444444444444444444444
Q ss_pred HHHHH
Q 010222 490 NQNNE 494 (514)
Q Consensus 490 tENkE 494 (514)
.+...
T Consensus 83 ~~~~~ 87 (150)
T PF07200_consen 83 QQQDE 87 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 76
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.60 E-value=7.7 Score=37.11 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
.+..|+..+..+......|..++..|+.++..+..+...|+.+......+.++.+++
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~ 155 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEAL 155 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777777777778888888888887777777777766654
No 77
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=86.51 E-value=4.6 Score=39.93 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSV---GLTNQNNELKFRLQ 500 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~---sL~tENkELK~RLQ 500 (514)
..|.+||.+|++|+..|+.+.. .|..||.+|+.-|.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444333 56778888877654
No 78
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.49 E-value=4 Score=41.70 Aligned_cols=7 Identities=29% Similarity=0.752 Sum_probs=3.5
Q ss_pred hhhcccC
Q 010222 363 DSFMGKL 369 (514)
Q Consensus 363 Ds~~~~l 369 (514)
|-||.-|
T Consensus 76 ~kf~eeL 82 (290)
T COG4026 76 EKFFEEL 82 (290)
T ss_pred HHHHHHH
Confidence 3465544
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.46 E-value=15 Score=34.17 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=42.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+.......+.-++.+++.+..++..++.+..+...|...+...+.+...+..+..+++..++.+.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 114 LKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666667777777777777777777775555666666666666666666665555443
No 80
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.42 E-value=6.4 Score=35.83 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 438 RILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 438 RiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
-+..-.+...-|+..=.+.-++|+..++.|+.++..+..++..|+.++..+.....
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555545555566777777777666666666666666555554433
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.36 E-value=1.7 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QL 478 (514)
+++|+.+-+.|.+||++|+++.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555556666666665533
No 82
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.20 E-value=6.5 Score=38.93 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.-|..+|..|+.||..|..+...++.+...|.+++..|+.+|-..
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~ 142 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF 142 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 557788888888888888888888888888888888888877333
No 83
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=86.13 E-value=1.7 Score=44.04 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSV----GLTNQNNELKFRLQA 501 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~----sL~tENkELK~RLQa 501 (514)
.+..|++||.+|++|+..|+.+.. .|+.||.+||+-|..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445577788888887766633333 377888888876643
No 84
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.10 E-value=4.4 Score=36.66 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+|=.+|..|+.....|..++..|+.+...|..||.+|+..-+.|+...
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888888888887777666544
No 85
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.99 E-value=3.3 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlL 481 (514)
|+.+++.|..+|..|.++++.|
T Consensus 71 ~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 71 LRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 86
>PRK09039 hypothetical protein; Validated
Probab=85.81 E-value=11 Score=39.29 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+|..|+.+...|+.|+..|+..+..++.+.++.+.+|+.|
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 87
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.77 E-value=6 Score=47.20 Aligned_cols=62 Identities=26% Similarity=0.269 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKE-----------------RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 439 iLkNRESAqRSRe-----------------RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+|+++..|+|.|. -+...|++||.+++.++.+...|...+......+..|..+...|+.+|+
T Consensus 415 rLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 415 RLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666777776542 2334455555555555555555555555444444455555555554443
No 88
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=85.60 E-value=0.44 Score=41.50 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.||+.|...+..|..++..|..++..|+.++..+..+...|+..|.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~ 70 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALI 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh
Confidence 5889999999999999999999999998888888888888777663
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.48 E-value=15 Score=37.88 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.9
Q ss_pred HHHHhcc
Q 010222 267 LFSAYMN 273 (514)
Q Consensus 267 lf~~Ymn 273 (514)
||.+||.
T Consensus 105 Lf~EY~~ 111 (325)
T PF08317_consen 105 LFREYYT 111 (325)
T ss_pred HHHHHHc
Confidence 5555554
No 90
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.43 E-value=3.2 Score=41.83 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
+|=++...|||.++..++.++..|..++..|+.++..|-.+.+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556778887777777777776666666665555544443
No 91
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.21 E-value=24 Score=30.59 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 436 AKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 436 ~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+.++-..++.....=..|..-+..||.++..|..|.+.-..++-.+.+....|..|++.|+..+.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34566777777777788888899999999999999999999999999999999999999888774
No 92
>PRK02119 hypothetical protein; Provisional
Probab=84.90 E-value=7.4 Score=32.62 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
-+..||.++..|+....-+...|..|.........+...|+.+|..|.++..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998888888888999999998876553
No 93
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.84 E-value=26 Score=34.22 Aligned_cols=51 Identities=18% Similarity=0.323 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.+-+.-+..+..++..++.+...|.-+...|++.+..|..|-.+|..+...
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666777777777777777777777777777666543
No 94
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=84.78 E-value=5.2 Score=38.59 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
+.+..+.+|..+++.|++|+..|..++..++.++..|..
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555554444443
No 95
>PRK04406 hypothetical protein; Provisional
Probab=84.70 E-value=8.2 Score=32.61 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.++.||.++..|+....-+..-|..|.........+...|+.+|+.|.++..
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999888888899999999998876553
No 96
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.68 E-value=9.8 Score=40.57 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tE 491 (514)
+.+++.|+.+...+..++..|+.++..+..+
T Consensus 364 ~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 364 KAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 97
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=84.61 E-value=15 Score=35.56 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhhhhc
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG-LTNQNNELKFRLQAMEQ-QAQLRDGI 512 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~s-L~tENkELK~RLQaLEQ-QaQLrDAL 512 (514)
.....+.+|+.+++.|+.+...|..++..+++.... +..+++..+.+++.|.. ..+|++-|
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555544443 33344445555655553 34444433
No 98
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.40 E-value=11 Score=32.42 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQR---DSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQr---e~~sL~tENkELK~RLQaLEQQa 506 (514)
+|..+++.|+.+-+.++.++..+.. +...|..+-++|+.++..++.+.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~ 90 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQL 90 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655 46677777777777777776544
No 99
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=84.31 E-value=4.4 Score=35.63 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkE 494 (514)
|+-|-...|.+|..|+.++..|..++..|+.++.....|..+
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555554444444444444444444333
No 100
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.07 E-value=5 Score=40.26 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
+..|++|+.+|..|+-+++++..++..++++...+-.+...+.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666655555443
No 101
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.00 E-value=4.2 Score=36.00 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
+.++.+.+++++++.|+.+|..|..++..|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44455666666666666666666666666654
No 102
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=83.99 E-value=0.18 Score=53.14 Aligned_cols=54 Identities=28% Similarity=0.478 Sum_probs=42.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLS-AQLTLLQRDS 485 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs-~QLtlLQre~ 485 (514)
|+++.+=+.+||.+|-++|.|||.++..|+.+...+..+|..|. .+++.|..++
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~ 337 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEV 337 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHH
Confidence 44553334599999999999999999999999999999999998 4444444433
No 103
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.92 E-value=12 Score=42.49 Aligned_cols=63 Identities=33% Similarity=0.400 Sum_probs=41.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 438 RILANRQSAARSKERKMRYISELEHKVQTLQTE------------------------ATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 438 RiLkNRESAqRSReRKKqYLeELE~KVq~LqtE------------------------NssLs~QLtlLQre~~sL~tENk 493 (514)
-.++|.+.--+--..+...|.+||.+++.++.+ |..|+.+++.|+.....|.++|.
T Consensus 105 aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~ 184 (617)
T PF15070_consen 105 AQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENM 184 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455544444446777888888887777655 45566777777777777777776
Q ss_pred HHHHHHH
Q 010222 494 ELKFRLQ 500 (514)
Q Consensus 494 ELK~RLQ 500 (514)
+|+..|+
T Consensus 185 elt~~lq 191 (617)
T PF15070_consen 185 ELTSALQ 191 (617)
T ss_pred HhhHHHH
Confidence 6665554
No 104
>smart00338 BRLZ basic region leucin zipper.
Probab=83.91 E-value=4.5 Score=32.18 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
.+..|+.+...|..++..|..++..|..|+..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 105
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.83 E-value=14 Score=36.03 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+.++-..|.+||.++-.|+.+...|..+.+....++..|..+...|++.+..++.
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777777777777777766654
No 106
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.77 E-value=8.7 Score=36.65 Aligned_cols=48 Identities=27% Similarity=0.369 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..|+.++..|+.+...+..-+..|+.++..|..+++.|..++..|+.
T Consensus 125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666666666666666666666666666654
No 107
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=83.60 E-value=5.9 Score=40.17 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.++..++..|+++++.|..+..+|+.+|..|
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444333
No 108
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=83.49 E-value=5.5 Score=41.44 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.||-.||.+.+....|...|..|+..|+.++..+..+.++.|..|+-|+..+
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4777789999999999999999999999998888888888888888877644
No 109
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.19 E-value=5.7 Score=38.86 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+.||..+++ ...++..|+.+-..+..++-.++..+..|..|..+||.+...++++
T Consensus 164 ~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 164 RERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444443 5555666666666666666666666666666666666666655543
No 110
>PRK14127 cell division protein GpsB; Provisional
Probab=83.17 E-value=7.8 Score=35.11 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLT-------------NQNNELKFRLQAMEQQA 506 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~-------------tENkELK~RLQaLEQQa 506 (514)
+.|..++..|+.++..|..++..++.+..... .-|-.+.+||..||+.+
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433321 24556778888888765
No 111
>PRK09039 hypothetical protein; Validated
Probab=82.95 E-value=5.9 Score=41.33 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.++..++.+.++...++..|++++..|+.+...|...|...
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
No 112
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=82.91 E-value=13 Score=30.47 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.|++|...|++|..+...|...+..|+.+.+....|-..-..||..+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467888888888888888888888888888777777777777776543
No 113
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.86 E-value=8.6 Score=32.08 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+-.+...+.|..|+.....++..+-.++..|+.|+..|+.+|+.+
T Consensus 22 ~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 22 SVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555666655666655566666666666666555544
No 114
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.40 E-value=16 Score=41.32 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+=+.|+..++.+.+.++.+...|..+++..+.++..|..+|.+||.+|+
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999988774
No 115
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=82.30 E-value=8.4 Score=31.64 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.||.++..|+....-+...|..|.........+...|+.+|+.|.++.
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888887777777777777787777776544
No 116
>PF15294 Leu_zip: Leucine zipper
Probab=81.83 E-value=4.7 Score=41.75 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|...+..|+.||..|+.++..++.++.....|+..|+.+|..|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999988865
No 117
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=81.78 E-value=11 Score=43.05 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..+.|||.|-+.|+.|..++..++++|++.+..-..|...||..+++-
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 457889999999999999999999999998888888888888887654
No 118
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.77 E-value=9.2 Score=33.78 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTL--QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 453 KKqYLeELE~KVq~L--qtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
....+..||.+++.| ..+...|.-+++.+.-+...|..+.+.+..++.-|=+
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888 7888888888888888888888888888877776543
No 119
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.44 E-value=5.1 Score=45.44 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
+..|+.+|+.|+.||..|...+..+++++.+|..+..+++.+
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555444433
No 120
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.37 E-value=15 Score=37.68 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
+|..|++.++.|+..|..+++.|+.++
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=15 Score=43.22 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=9.4
Q ss_pred ccCCCcchhhhhhhh
Q 010222 41 QLDLPQLNQNQLRAR 55 (514)
Q Consensus 41 ~~~~~~~~~~~~~~~ 55 (514)
|-.+|+.-..||-+.
T Consensus 43 qS~LP~~VLaqIWAL 57 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIWAL 57 (1118)
T ss_pred hcCCChHHHHHHHHh
Confidence 455677666776554
No 122
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=80.97 E-value=6.3 Score=37.10 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+|..+...|+++.+.|..||..++.++.+++.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666667777788888888877764
No 123
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=80.88 E-value=6.6 Score=43.34 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+.+-+.++.+|+++...|+.+++++.++...+..+.++|..+++.|++|
T Consensus 71 LteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555444
No 124
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.80 E-value=5.9 Score=36.77 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT-NQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~-tENkELK~RLQaLEQQaQL 508 (514)
+.--.++|..++..|+.|+..|..++..|+....... .|...+......+...+..
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666666666666666666665322221 2334444444444444433
No 125
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.55 E-value=32 Score=32.41 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
..|...+..|..++..|..|+..|...++.+..++
T Consensus 62 ~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 62 EELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333345555555555555555555554443
No 126
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.53 E-value=5.8 Score=46.41 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=43.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
...+-..=.--+.+-.-.++.|.+++.+|+.|+..|..+++....++..|+.++.-||.+|.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444455555677777788888888888888888888888888888888888775
No 127
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.51 E-value=9.6 Score=42.95 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
+..+-+++|+.+|+.|..+...+..++..++.+...+..|..+.+...+.++++..++.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777777777777777776666666676666666666666666553
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.28 E-value=8.4 Score=40.43 Aligned_cols=44 Identities=41% Similarity=0.432 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhh
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA-MEQQAQLRD 510 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa-LEQQaQLrD 510 (514)
.+.|+..|..|+..||+.+..+..||.+|...|.. .+.|.+|..
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~a 276 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQA 276 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777777777777653 333444443
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=80.21 E-value=12 Score=34.87 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
..++||.+++.|+.++..+..+|+.|+..+..|..+...|..+|..
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555555555555555555555555555544443
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.21 E-value=10 Score=39.06 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtl 480 (514)
.++++-.++..++.++.++..++..
T Consensus 60 qi~~~~~k~~~~~~~i~~~~~eik~ 84 (265)
T COG3883 60 QIEEIQSKIDELQKEIDQSKAEIKK 84 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 131
>PRK03918 chromosome segregation protein; Provisional
Probab=80.16 E-value=21 Score=40.35 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=3.5
Q ss_pred HHHhhhc
Q 010222 414 AELKKIM 420 (514)
Q Consensus 414 ~E~KKim 420 (514)
.++++++
T Consensus 145 ~~r~~~~ 151 (880)
T PRK03918 145 ESREKVV 151 (880)
T ss_pred HHHHHHH
Confidence 4555544
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=80.10 E-value=15 Score=29.22 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|..++..|+.++..|..++..|+..++.|..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444433
No 133
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.92 E-value=12 Score=34.19 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
||.++..|+.++..|..+-..+..++..|+.+|.
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e 61 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENE 61 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 134
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.86 E-value=12 Score=36.16 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
.|+|=.++...|...|+-|+.|+......+..|..++..|+..+..+..+...++
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666677777777777777777777777777777777766655555544
No 135
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.60 E-value=5.5 Score=31.75 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlL 481 (514)
++.+.+|+.+++.|+.+|..|..++..|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555554
No 136
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=79.28 E-value=50 Score=31.23 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=9.4
Q ss_pred CCcchHHHhhhcc
Q 010222 409 GEFSGAELKKIMA 421 (514)
Q Consensus 409 g~~s~~E~KKim~ 421 (514)
+.|+.+.++.|+.
T Consensus 14 ~Gft~~QAe~i~~ 26 (177)
T PF07798_consen 14 AGFTEEQAEAIMK 26 (177)
T ss_pred CCCCHHHHHHHHH
Confidence 3488888888774
No 137
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.26 E-value=50 Score=32.05 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSA 476 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~ 476 (514)
.+..|+.+++.++.++..++.
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 138
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.23 E-value=35 Score=34.00 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=14.8
Q ss_pred CcchHHHhhhcchhHHhhhhccChHHHHHHHHhHHHHH
Q 010222 410 EFSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAA 447 (514)
Q Consensus 410 ~~s~~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAq 447 (514)
..|++|+.+.-..+. -+|+||..+.+.++-
T Consensus 7 ~~sDeell~~skeel--------~~rLR~~E~ek~~~m 36 (195)
T PF10226_consen 7 KVSDEELLRWSKEEL--------VRRLRRAEAEKMSLM 36 (195)
T ss_pred cCCHHHHHhcCHHHH--------HHHHHHHHHHHHHHH
Confidence 345555555443332 255666555555544
No 139
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.93 E-value=23 Score=38.15 Aligned_cols=60 Identities=27% Similarity=0.316 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ-AMEQQAQLRD 510 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ-aLEQQaQLrD 510 (514)
.|-+..+..||.-+..++.||..|..++..+++++.....|..+|..+|. ++.-|+-|.|
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888889999999999999999999988888888888866663 4544544443
No 140
>PLN02678 seryl-tRNA synthetase
Probab=78.92 E-value=23 Score=38.72 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQ---RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQ---re~~sL~tENkELK~RLQaLEQQa 506 (514)
|..+++.|+.|-+.++.++..+. .+...|..+-++|+++|..|+.+.
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~ 94 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEV 94 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554422 233456666677777777666543
No 141
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.41 E-value=18 Score=34.97 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 449 SKERKMRYISELEHKVQTLQ 468 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~Lq 468 (514)
.-++.+..+.+|+.+++.+.
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555443
No 142
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.40 E-value=18 Score=34.12 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..++..+..+++.|+.+......+...||.|.+.++.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666677777777777776654
No 143
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.30 E-value=42 Score=33.43 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=53.5
Q ss_pred hhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 427 EIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 427 ElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.++..|-+|++ +.+-...+.|.-..-+.....|...+..-+..-.....+-..++.+...|..|...++.+|..|..|+
T Consensus 99 ~LA~~eirR~~-LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv 177 (192)
T PF11180_consen 99 RLADVEIRRAQ-LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQV 177 (192)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554 55555666666666666777777777777766666666666677777778888777777777776554
Q ss_pred H
Q 010222 507 Q 507 (514)
Q Consensus 507 Q 507 (514)
+
T Consensus 178 ~ 178 (192)
T PF11180_consen 178 R 178 (192)
T ss_pred H
Confidence 4
No 144
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=78.24 E-value=25 Score=34.60 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
+..|-.-...+..||..|+.++..|.+++..|...+..|..+-+.|.++..+.++|
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~L 206 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLESL 206 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445556677889999999999999999999999999999999998888777765
No 145
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=78.14 E-value=6.3 Score=38.87 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=35.2
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
-..++.++=.-.|| |.|-|-|+ ||..... |..++..|..++..|..|+.+|+..+..+..+.+
T Consensus 88 gL~pRQVavWFQNR----RARwK~kq----lE~d~~~-------Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~ 150 (198)
T KOG0483|consen 88 GLQPRQVAVWFQNR----RARWKTKQ----LEKDYES-------LKRQLESLRSENDRLQSEVQELVAELSSLKREMQ 150 (198)
T ss_pred CCChhHHHHHHhhc----cccccchh----hhhhHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 45788888788886 44555443 4554444 4445555555555555555555555554443333
No 146
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.81 E-value=21 Score=42.92 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=17.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKV-QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 454 KqYLeELE~KV-q~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.+.|.+++.++ +.++.+..++..++..|+++...|..++..|+.++
T Consensus 378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333 33333333333333333333333333333333333
No 147
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=77.74 E-value=19 Score=38.50 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRD----SVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre----~~sL~tENkELK~RLQaLEQQa 506 (514)
+|..+++.|+.|-+.++.++..+... ...|..+-++|+.+|..|+++.
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 92 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAAL 92 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666553221 4566667777777777776544
No 148
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=77.60 E-value=10 Score=31.03 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtl 480 (514)
.+..++.+++.++.||..|..++..
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 149
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=77.54 E-value=43 Score=34.84 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
..++.++.++...+.+...+..+++.....+..|..+-..|..++..+...+
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555666666555555555555555555555554433
No 150
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.45 E-value=24 Score=37.85 Aligned_cols=46 Identities=30% Similarity=0.463 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQR---DSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQr---e~~sL~tENkELK~RLQaLEQQ 505 (514)
|..+++.|+.+-+.++.++..+.. +...|..|.++|+.+|..|+++
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 88 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAE 88 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544221 2335666667777777666654
No 151
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.45 E-value=19 Score=30.14 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+||.++..|+....-+..-|..|.........+...|+.+|..|.++..
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999988888888888888888888888888888866543
No 152
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=77.33 E-value=28 Score=39.27 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+|...+..++.+...|..|+.+|+..+..|++...
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777788888888888877776543
No 153
>PRK04863 mukB cell division protein MukB; Provisional
Probab=77.28 E-value=35 Score=42.47 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=12.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMR 455 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKq 455 (514)
++++.+-+.++.|.+.+.-+.+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665554433
No 154
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.18 E-value=12 Score=34.32 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
++=.+|..|+.....|.+++..|.+....|+.||..|+...+.|+...
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHh
Confidence 455788999999999999999999999999999999999988887654
No 155
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=76.91 E-value=33 Score=31.79 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLS--------AQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs--------~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+..+..++..|+..+..|. ..+.-|---+..+...+..+|.||..|-
T Consensus 57 ~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 4444444444444444443 3444444445555566666777666553
No 156
>PF14282 FlxA: FlxA-like protein
Probab=76.86 E-value=14 Score=32.69 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 476 AQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 476 ~QLtlLQre~~sL~tENkELK~R 498 (514)
.++..|+.++..|..+...|..+
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.82 E-value=48 Score=34.43 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+-++.=.+.+.+||.+...|+.+-..+......++.+...+..|...|+.+++.+..
T Consensus 69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444566666666666666666666666666666666666666666655443
No 158
>PRK04325 hypothetical protein; Provisional
Probab=76.73 E-value=19 Score=30.22 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+..+|.++..|+....-+..-|..|......-..+...|+.+|+.|..+.
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888888888888888888888888888886544
No 159
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=76.60 E-value=12 Score=42.35 Aligned_cols=64 Identities=25% Similarity=0.212 Sum_probs=41.2
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.|.|-.||-. |+=|-+.-.++-++.+ +.-...|..+|..|..+++.|++||..||.||..|+.+
T Consensus 275 ~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 275 SDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred cCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 5777777632 3333333333333322 12234588888888889999999999999999888754
No 160
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=76.59 E-value=28 Score=35.12 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=4.0
Q ss_pred HHHHhhhhc
Q 010222 504 QQAQLRDGI 512 (514)
Q Consensus 504 QQaQLrDAL 512 (514)
....|++.+
T Consensus 201 e~~~Lq~~i 209 (216)
T KOG1962|consen 201 EYSKLQEQI 209 (216)
T ss_pred HHHHHHHHH
Confidence 444444443
No 161
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.55 E-value=25 Score=32.19 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 010222 490 NQNNELKFRLQAME 503 (514)
Q Consensus 490 tENkELK~RLQaLE 503 (514)
.++.||+..|+.|.
T Consensus 96 E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 96 EEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666654
No 162
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.52 E-value=20 Score=39.64 Aligned_cols=50 Identities=22% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.++.|+.++++|+.||+.|+..++.|...+..|..+...+-.+|+++..|
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45678889999999999999999999999999888887777777766544
No 163
>PRK00295 hypothetical protein; Provisional
Probab=76.26 E-value=20 Score=29.72 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
||.++..|+....-+..-|..|.........+...|+.+|+.|.++.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887777777777788888887776544
No 164
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=76.00 E-value=9.6 Score=31.08 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLS 475 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs 475 (514)
+.+||.++..+.....+++
T Consensus 2 i~elEn~~~~~~~~i~tvk 20 (55)
T PF05377_consen 2 IDELENELPRIESSINTVK 20 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666555555444333
No 165
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=75.78 E-value=9.9 Score=33.70 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.+|++++..++.++..|..+...|++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333
No 166
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.76 E-value=46 Score=34.75 Aligned_cols=15 Identities=7% Similarity=-0.082 Sum_probs=7.7
Q ss_pred Ccccccchhhhhccc
Q 010222 354 TRHYRSVSMDSFMGK 368 (514)
Q Consensus 354 ~rH~RS~SmDs~~~~ 368 (514)
..|.|=.+.-.+++|
T Consensus 123 K~~aRl~ak~~WYeW 137 (312)
T smart00787 123 KTFARLEAKKMWYEW 137 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555444444
No 167
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.59 E-value=32 Score=36.77 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..|+.+..+|..+...+..++..|..+..+++..+..++.+
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444333
No 168
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=75.58 E-value=66 Score=29.51 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 447 qRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.++.+--|.-.++|-.+-..|+.-+..|..+...+.+.+..|..+..++...|..
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555544
No 169
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=75.43 E-value=5.8 Score=43.70 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=46.0
Q ss_pred hhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 428 IALTDPKRAKRILANRQSAARSKERKMRYISELEHK----VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 428 lAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~K----Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+...++|-+||+ |-|.|+|+--+|=.+| |+.|+.....-.++...|+++...|..+|..|-++|..|+
T Consensus 242 LTKaEEriLKrv--------RRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 242 LTKAEERILKRV--------RRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred chHHHHHHHHHH--------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 334455555554 3445555555554444 4456777777777888888888888888888888887775
Q ss_pred H
Q 010222 504 Q 504 (514)
Q Consensus 504 Q 504 (514)
.
T Consensus 314 t 314 (472)
T KOG0709|consen 314 T 314 (472)
T ss_pred H
Confidence 4
No 170
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.19 E-value=32 Score=35.47 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+|..|..++..+..++..++.++..|+.+...+..+..+++.++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333333
No 171
>PRK00846 hypothetical protein; Provisional
Probab=75.15 E-value=22 Score=30.60 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.+||.++..|+....-...-|..|.........+...|+.+|+.|..+.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL 57 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 57 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888888888888888888888888776644
No 172
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=75.12 E-value=11 Score=33.55 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
..||..+++..+.|..-|++.++.+..++..|+.|.+.+|.+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888999999999999999888888888888888887765
No 173
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.80 E-value=30 Score=33.09 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 466 ~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.++.|...|..++..|+.++..|....+.+..++
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 4444555555555555555555554444443333
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.77 E-value=30 Score=38.43 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYI----SELEHKVQTLQTEATTLSAQLTLLQRDSVGL----TNQNNELKFRLQAME 503 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYL----eELE~KVq~LqtENssLs~QLtlLQre~~sL----~tENkELK~RLQaLE 503 (514)
+-+-++-...|=+++..+=+||++.+ .+++.+.+.++.+|..|......+...+..+ ..++..+.++++.|
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dL- 440 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDL- 440 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 33444556667777777777776543 3344444445545554444333333322222 22233333344444
Q ss_pred HHHHhhhhc
Q 010222 504 QQAQLRDGI 512 (514)
Q Consensus 504 QQaQLrDAL 512 (514)
|.||||.+
T Consensus 441 -qEQlrDlm 448 (493)
T KOG0804|consen 441 -QEQLRDLM 448 (493)
T ss_pred -HHHHHhHh
Confidence 45566654
No 175
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=74.60 E-value=12 Score=39.50 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtl 480 (514)
.+|+..|+.+++.|+.+..+|..+++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666777777777777777665443
No 176
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=74.58 E-value=25 Score=31.09 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEAT-TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENs-sLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|+==-+|-..=|.||..|..-.. ....++..|+.++..|..||..|+.+|.....
T Consensus 22 ~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 22 RELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778999999975443 37788999999999999999999999976554
No 177
>PRK03918 chromosome segregation protein; Provisional
Probab=74.48 E-value=40 Score=38.22 Aligned_cols=6 Identities=17% Similarity=0.750 Sum_probs=3.0
Q ss_pred cCCCCc
Q 010222 406 FGNGEF 411 (514)
Q Consensus 406 fG~g~~ 411 (514)
||...|
T Consensus 155 ~~~~~~ 160 (880)
T PRK03918 155 LGLDDY 160 (880)
T ss_pred hCCHHH
Confidence 455544
No 178
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=74.41 E-value=21 Score=29.26 Aligned_cols=49 Identities=10% Similarity=0.281 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.++++++..++++...+...+..|++....+..+-..+..+|..++...
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666776666543
No 179
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=74.18 E-value=37 Score=36.51 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSA---QLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~---QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..+++|..+.+.+.++...+.. +.+.|..+...|..+.++|+.++..++++
T Consensus 42 ~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 42 TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555544221 23345555555555555665555555443
No 180
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.17 E-value=36 Score=40.31 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=4.4
Q ss_pred HHhHHHHHH
Q 010222 440 LANRQSAAR 448 (514)
Q Consensus 440 LkNRESAqR 448 (514)
+--||+|++
T Consensus 395 ie~rEaar~ 403 (1118)
T KOG1029|consen 395 IERREAARE 403 (1118)
T ss_pred HHHHHHHHH
Confidence 334555554
No 181
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=74.14 E-value=13 Score=41.74 Aligned_cols=55 Identities=29% Similarity=0.306 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ-QAQLRDG 511 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ-QaQLrDA 511 (514)
|+.+-.+...++.||..|..+|..++.+...+..|+.+|..-|+++.+ |-+|.+.
T Consensus 221 l~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE 276 (596)
T KOG4360|consen 221 LQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAE 276 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444555556678889999999999999999999999999988887654 5555444
No 182
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.12 E-value=22 Score=33.19 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQ 482 (514)
.++..+......+..++..++
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 183
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=73.96 E-value=6.6 Score=40.72 Aligned_cols=56 Identities=25% Similarity=0.263 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH--HHHhhh
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTL-------LQRDSVGLTNQNNELKFRLQAMEQ--QAQLRD 510 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtl-------LQre~~sL~tENkELK~RLQaLEQ--QaQLrD 510 (514)
..|.++|.+|+.|+--|..|.++++- +...-..+..|...++++|..|+. ++.|+.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~ 281 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRA 281 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34668999999999999999999842 344556677888888888887763 444444
No 184
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=73.87 E-value=23 Score=37.58 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=36.6
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTE-----------ATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtE-----------NssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
..++.+++|++|+..-..=.||...+.-=++.+++|..- ......++.+||.+++.|..+..+++.+|+
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666889999988777777754443333344444321 001123445555555555444444444444
Q ss_pred HH
Q 010222 501 AM 502 (514)
Q Consensus 501 aL 502 (514)
.+
T Consensus 200 ~~ 201 (323)
T PF08537_consen 200 IT 201 (323)
T ss_pred HH
Confidence 33
No 185
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=73.74 E-value=25 Score=29.69 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+++.+..+.....|..+++..++++..|...+..|-.+++.|..+.
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666666666666666666554
No 186
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.73 E-value=24 Score=33.26 Aligned_cols=54 Identities=15% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhh
Q 010222 458 SELEHKVQTLQTEATTLSA---QLTLLQRDSVGLTNQNN----ELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~---QLtlLQre~~sL~tENk----ELK~RLQaLEQQaQLrDA 511 (514)
..|+.++.....+...|.. -++.|+.++..|..+|. +++.+|..+.-..-|..|
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~a 90 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSA 90 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 34444455555555555 444444444333333333
No 187
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.72 E-value=20 Score=37.10 Aligned_cols=42 Identities=24% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
+.+|+..+..++.+...|-.++..++.+...+..++.+++..
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~e 81 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAE 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333333333333
No 188
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.54 E-value=33 Score=28.75 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|-+.|..|-.+-+.|....-.+...|..|+.++..+..+...|+.+++.++.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555443
No 189
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.36 E-value=38 Score=42.19 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
|..++..++.+...+..+...++..++.++.-.+|+
T Consensus 395 LqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 395 LKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333334444444333333
No 190
>PRK00736 hypothetical protein; Provisional
Probab=73.27 E-value=26 Score=29.03 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+|.++..|+....-+..-|..|......-..+...|+.+|+.|.++..
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888877777777777777788888877765543
No 191
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.21 E-value=34 Score=35.96 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRD--------------SVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre--------------~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+-+++-..++..|+.||..|...+..|++. ...|..++...|.+|+.|++...
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelk 119 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELK 119 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666776666666665543 33344445555666666665543
No 192
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.01 E-value=27 Score=39.33 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 445 SAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 445 SAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.|.+.+..=..-+.+++..+..|++|...+.+.+..|+.+...|..||..|...|+.+.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34334443344445556666666666666666666666666666666666666665443
No 193
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=73.01 E-value=14 Score=29.45 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.+..++..|+.++..+..+|.+|+.+++.|
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444555555555444
No 194
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.92 E-value=31 Score=41.60 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=34.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
-|..+.+|-||.-- -.|+.....+|+.++++.....+.+..++..|.+....|..||..|-.+|+.|.+
T Consensus 490 iknlnk~L~~r~~e---lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLE---LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666666665432 2344444445555555555555555555555555555555555555555544443
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.88 E-value=54 Score=33.01 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
...+.+|+.....++.+....+.....+..|-..||.++..+..
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433
No 196
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=72.66 E-value=11 Score=34.91 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
.|...|+.||..|...+..|+.||.-||.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666666667766664
No 197
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.53 E-value=58 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlL 481 (514)
.+..|+.++..|+..|..|..+|..+
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHH
Confidence 34444444444444444444444443
No 198
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=72.31 E-value=22 Score=37.16 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=37.4
Q ss_pred hhccChHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 428 IALTDPKRAKRILANRQSAARSKERK--MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 428 lAl~DpKR~KRiLkNRESAqRSReRK--KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
++..++|=.|=|+.|- |.--+|- +-.|+-|-.++..|+.....|.+++....+++..+......|+.++..|..+
T Consensus 86 l~evEekyrkAMv~na---QLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNA---QLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677778888883 3332221 2233444444444444444444444444444444444444444444444444
Q ss_pred HHhh
Q 010222 506 AQLR 509 (514)
Q Consensus 506 aQLr 509 (514)
+.-+
T Consensus 163 L~~r 166 (302)
T PF09738_consen 163 LKQR 166 (302)
T ss_pred HHHH
Confidence 4333
No 199
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=72.30 E-value=63 Score=35.69 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
|++-..+-++-+..|..+.+.|+++..+|..+...|+.+.+.|.++.++|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555566666666666666666666666666666666555555
No 200
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.30 E-value=40 Score=40.76 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEA-TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtEN-ssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++|..++.||++|..++.+. ..+..++...+.++..|..|+..|..++..|.+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666666555 666666777777777777777777777766665
No 201
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=72.13 E-value=45 Score=37.51 Aligned_cols=60 Identities=18% Similarity=0.337 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
=.+.++.++..|+.|..-+..+..++.....+...|..+-..|+.+.+.++.+.++-+++
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f 102 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAF 102 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999999999999999999999999888887653
No 202
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.13 E-value=40 Score=36.45 Aligned_cols=69 Identities=22% Similarity=0.352 Sum_probs=42.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL--------------LQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtl--------------LQre~~sL~tENkELK~RL 499 (514)
-|+|.+..|-|--+.-|+- +++-..+.++|+..|..|..++.. |+.-...+..||..|+.+|
T Consensus 75 ~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677777766665543 334444555666666666666554 3445556677777777777
Q ss_pred HHHHHHH
Q 010222 500 QAMEQQA 506 (514)
Q Consensus 500 QaLEQQa 506 (514)
+++.++.
T Consensus 151 ~~l~~e~ 157 (401)
T PF06785_consen 151 DALQQEC 157 (401)
T ss_pred HHHHHHH
Confidence 7766554
No 203
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.08 E-value=6.5 Score=32.52 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.|...|+.+|..|+.++..|..||.-||...
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556677777777777777777888777653
No 204
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.85 E-value=77 Score=29.07 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010222 446 AARSKERKM 454 (514)
Q Consensus 446 AqRSReRKK 454 (514)
|...-.+|+
T Consensus 122 ~~~~l~~k~ 130 (218)
T cd07596 122 LKKDLASKK 130 (218)
T ss_pred HHHHHHHHH
Confidence 333333333
No 205
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=71.74 E-value=36 Score=40.47 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=49.1
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
..|..++|--+.-+...|.--+|-+..++++|.+....++....|+..++.|..++..|..++.+..++++.
T Consensus 385 ~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~ 456 (980)
T KOG0980|consen 385 REEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLES 456 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544555555788888888888888888888888887777777777777666653
No 206
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.22 E-value=16 Score=37.03 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
+-+..|..+|+.|+++|.+|.+++..||.
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666666666666666666666654
No 207
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.17 E-value=57 Score=27.99 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSA---QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~---QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+++|..+.+.+..+...+.. ....|..+...+..+..+|..++..++.
T Consensus 43 ~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 43 QELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444443 2444444444444444444444444443
No 208
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.11 E-value=47 Score=32.15 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
..+|+.++..|+.++..|..++..|+.++..+...+.+++...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777777777777776666655443
No 209
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=70.98 E-value=16 Score=40.52 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLL---Q---RDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlL---Q---re~~sL~tENkELK~RLQaLEQQaQL 508 (514)
++.||.++..|+.+...|..++..- . .+...|..|..+++.+|+.++.++.-
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 627 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEE 627 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998888542 1 15778888888888888888776654
No 210
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.97 E-value=27 Score=28.56 Aligned_cols=35 Identities=6% Similarity=0.300 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
+..|+++...|...+..++.++..+..+..+|++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555555544444333333333333
No 211
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=70.82 E-value=26 Score=35.65 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=12.6
Q ss_pred CCCCCCcccccchhhhhccc
Q 010222 349 DVASTTRHYRSVSMDSFMGK 368 (514)
Q Consensus 349 ~~~p~~rH~RS~SmDs~~~~ 368 (514)
.|-|.+|-.-|.-+|-.|..
T Consensus 120 GicP~rreLYsQcFDElIRq 139 (259)
T KOG4001|consen 120 GICPIRRELYSQCFDELIRQ 139 (259)
T ss_pred CcCCCcHHHHHHHHHHHHHH
Confidence 36777777666666665543
No 212
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.80 E-value=20 Score=37.78 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+..|.+|+++++.+..||..|...+...+.-...|.+|..+|+.+...
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999998754
No 213
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=70.51 E-value=96 Score=29.15 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKV-QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 451 eRKKqYLeELE~KV-q~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..--+|-++||.++ ..++.-+..--.++..||.-+.....+-..|+..+..+++
T Consensus 78 ~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 78 NIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888 8888888888888888888888888888888877766654
No 214
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.44 E-value=6.9 Score=33.95 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
.-|+++++.|+.+++.++.+|..|..+|..++
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567778888888888888888888877654
No 215
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.32 E-value=86 Score=31.30 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
+.-+.++..++......+..|..++..|..++.........|..+++.|..+..+
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 4444555555555555555555556655555555555555555555555554433
No 216
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.84 E-value=20 Score=30.37 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 470 ENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
+...+..++..++++...|..||..|+.++..|.....+
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rI 74 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRI 74 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 344455556666666666666666666666555444333
No 217
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=40 Score=39.94 Aligned_cols=57 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM-EQQAQLRDG 511 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL-EQQaQLrDA 511 (514)
+|+++|-..++.+......|-.+++.+++....|..||.+|+.+++.+ +++.||++-
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q 707 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQ 707 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555432 344444443
No 218
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=69.37 E-value=7.8 Score=35.80 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtl 480 (514)
|..-++||+.+++.|+.||..|+.++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456899999999999999999998865
No 219
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=69.36 E-value=5.3 Score=30.92 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 466 ~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.|-..|..|..++..|+.+...|..||..|+.++.
T Consensus 11 ~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 11 ELAKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------------HHHHHHHHHHHHHHHH
T ss_pred HHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34455666777777777777777777777776653
No 220
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=69.12 E-value=14 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 476 AQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 476 ~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+..|+.++..|..+|..|+.++..|++
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666677777777777777654
No 221
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.09 E-value=23 Score=33.38 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 010222 449 SKERKMRYISELEHKVQTLQT---EATTLSAQLTLLQRDSV 486 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~Lqt---ENssLs~QLtlLQre~~ 486 (514)
.+.-.+..|.+...++..|+. .|..|..+++.|+.++.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 444455556666666666665 56666666666666666
No 222
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.44 E-value=22 Score=32.83 Aligned_cols=42 Identities=31% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 448 RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
--+..|..-+++|+.+++.|+.+..+|..+-..++.++..|.
T Consensus 63 lvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 63 LVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888888888887777776666655444443
No 223
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.36 E-value=54 Score=34.33 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|.-|++||..+..|+.++......++.+.+.+..|..|..+|+.+|....+
T Consensus 118 kd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rde 168 (302)
T PF09738_consen 118 KDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDE 168 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999998889999999999999999999999876544
No 224
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.27 E-value=76 Score=33.02 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=45.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ-----------------------------RDSVGLT 489 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQ-----------------------------re~~sL~ 489 (514)
+.+.++.++.-..|=..-.+.||.-...|+.+|..|..+...+. ..+..+.
T Consensus 55 l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~ 134 (309)
T PF09728_consen 55 LQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLR 134 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 44555555555555555566677777777777777665433221 3445677
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 010222 490 NQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 490 tENkELK~RLQaLEQQaQLrD 510 (514)
.||..|+.+|..|-.|-.+|+
T Consensus 135 ~eN~~L~eKlK~l~eQye~rE 155 (309)
T PF09728_consen 135 EENEELREKLKSLIEQYELRE 155 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887777776665
No 225
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=68.26 E-value=16 Score=33.33 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|-.+|-+||.-...|++++.....++-.|..||..|-+.|+.|-.
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 445677777788889999999999999999999999999887754
No 226
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=68.19 E-value=14 Score=29.77 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
||+..|.|||.+++.-+ |.-.+ .-.....++..|..||..|+.+|..+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788887776533 11111 12334456666777888888777654
No 227
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=67.70 E-value=27 Score=34.83 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
.||..|+.+|+.++.++..|..||.+|+.-.+.+..-+-+.+.|
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERL 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888899889999999999988887655554444444433
No 228
>PF10630 DUF2476: Protein of unknown function (DUF2476); InterPro: IPR018903 This is a family of proteins of unknown function. The proteins in this family are rich in proline residues.
Probab=67.64 E-value=18 Score=37.31 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 010222 163 SLLPPSPFNRGNASRIGESLPPRNKHRR 190 (514)
Q Consensus 163 ~~~ppsp~~~~~~~~~~~~LpPrk~HRR 190 (514)
-+|||||....+..+.-..=||+|+-||
T Consensus 228 QPLPPSPsPgPq~~~~rp~rPpcKARRr 255 (256)
T PF10630_consen 228 QPLPPSPSPGPQERPPRPPRPPCKARRR 255 (256)
T ss_pred CCCCcCcCCCccccCCCCCCCcchhhhc
Confidence 3677877655554333333477787776
No 229
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=67.61 E-value=7.4 Score=41.67 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL 488 (514)
-.|++||..|+++++.|..+.+.|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444444
No 230
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=67.60 E-value=38 Score=33.13 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
++|++|+.+-+.+.+.++.+..+|..++...+
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777766666666666666665555544
No 231
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=67.59 E-value=36 Score=34.27 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlL 481 (514)
..|+.||++||.+++.|..-...|..+-..|
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eL 55 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHRKEL 55 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999998888877665544
No 232
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.46 E-value=42 Score=32.18 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+|.++..|+.....+..++..|...+..|..+..+++.+...|.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555544443
No 233
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.45 E-value=79 Score=28.61 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTL----LQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtl----LQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.++..++..|+.+.......+.. +..+...|..+..+++.|+..|..|=.
T Consensus 69 ~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 69 QELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455554444444433332 344556666677777777776665543
No 234
>PHA03162 hypothetical protein; Provisional
Probab=67.40 E-value=3.6 Score=38.71 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLT 479 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLt 479 (514)
+|+.-++||+.++..|+.||..|+.+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999983
No 235
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=67.37 E-value=36 Score=27.60 Aligned_cols=55 Identities=9% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQ-RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQ-re~~sL~tENkELK~RLQaLEQQa 506 (514)
-|++.|.++|..+...+.-...|.-++..+- .....+....+.+|..|..|.++.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555554444443 555667777777777777776553
No 236
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=67.18 E-value=17 Score=30.33 Aligned_cols=30 Identities=33% Similarity=0.527 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
.+..|+.+++.++.+...|..++..++.+.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l 92 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 237
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.98 E-value=53 Score=34.73 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 444 ESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
+.++|-....+..+.++|+..+.-+........+-..++..+..|..||--|+++|......+-.+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~k 247 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNK 247 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777888888888888888877777778888888888888888888888887655554433
No 238
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.80 E-value=40 Score=33.72 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
.-=+.+.+.|+...+..++|+.+...|+.+...|+.++..++...-...
T Consensus 102 e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~ 150 (203)
T KOG3433|consen 102 ESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVF 150 (203)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 3334444445555555555555555555555555555544444333333
No 239
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=66.71 E-value=5.6 Score=30.79 Aligned_cols=42 Identities=31% Similarity=0.347 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 436 AKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 436 ~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QL 478 (514)
.+++..||+=|+..-.... .+.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 3556667766665544433 47788888888888888877665
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.32 E-value=13 Score=38.10 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+.+||.++..|+-+..+|.. ++.++.++.....+..+...+++.++...
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~~~~~~g~ 106 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARLDSLESGR 106 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 57899999999999999998 88888888888888888888888777653
No 241
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=66.07 E-value=18 Score=42.70 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=6.6
Q ss_pred CCCccchhccccc
Q 010222 230 VAKPAQLVKKESS 242 (514)
Q Consensus 230 ~~k~~~lv~~e~~ 242 (514)
.-||-.+.|.|-.
T Consensus 613 gLkpKK~~k~e~~ 625 (1102)
T KOG1924|consen 613 GLKPKKVYKPEVP 625 (1102)
T ss_pred CCCccccCCCCCc
Confidence 3455555555543
No 242
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.99 E-value=52 Score=29.76 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.|+.++..++.+...|..+....+..|
T Consensus 63 ~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 63 QLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333
No 243
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.98 E-value=57 Score=35.82 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
|..|+.++...+.++..+..+|..+...+..|..+.
T Consensus 75 i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 75 IASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 244
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.92 E-value=1.1e+02 Score=28.08 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTL 474 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssL 474 (514)
+-.-|.++..+++.++..+...+.+...|
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333
No 245
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=65.82 E-value=33 Score=38.34 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLL---Q----RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlL---Q----re~~sL~tENkELK~RLQaLEQQa 506 (514)
+.++.||.++..|+.+...|..++..- + .....|..|..+++.+|+.+..++
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w 621 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAW 621 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888877532 1 146667777777777777666554
No 246
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.81 E-value=43 Score=33.59 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.||..+..++.+...+..++..|+.....|.....+|+.+.+.+
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544443
No 247
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=65.62 E-value=21 Score=36.96 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|.+||+++..++.|+....++|+.+.+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR 193 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKR 193 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhH
Confidence 3444444444444444444444444433
No 248
>PHA03155 hypothetical protein; Provisional
Probab=65.60 E-value=7.6 Score=35.78 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtl 480 (514)
-++||+.+++.|+.||..|+.++..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999999854
No 249
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.58 E-value=57 Score=36.53 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
+.+++||.++..++.+...+..++..++.+...+..+..+|+
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444444444333
No 250
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=65.45 E-value=73 Score=34.65 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..+..-...+..++..+..+...+..+.++|+++|+.|+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555566666666666666666666666666544
No 251
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=65.43 E-value=76 Score=36.71 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 445 SAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 445 SAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlL 481 (514)
..-++|++=|+-|..||+++...+..-..|..||...
T Consensus 478 ~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 478 NLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777778888888777766666666655553
No 252
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.21 E-value=78 Score=31.82 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
|+.+...++.++..|..+....+.+...|..+..++...+..|++..+
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESE 99 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444333
No 253
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.08 E-value=42 Score=37.03 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=50.8
Q ss_pred ccccCCCCcchHHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 403 SLEFGNGEFSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 403 s~efG~g~~s~~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
++-.|.+ |..++.+|-+.--.-...++-+.|.-||.|.- +.|.|.-+-+.+--+ .|+.+ .+...++.++
T Consensus 24 sl~cghl-Fgs~cie~wl~k~~~~~cp~c~~katkr~i~~-e~alR~qa~dt~~~~-------rle~q--~~T~~ctree 92 (463)
T KOG1645|consen 24 SLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGKATKRQIRP-EYALRVQAMDTENEQ-------RLEEQ--RRTHTCTREE 92 (463)
T ss_pred eeccccc-ccHHHHHHHHhhhhhhhCcccCChhHHHHHHH-HHHHHHHHHhhhHHH-------HHHHH--HHHHHHHHHH
Confidence 3444444 66778888774222235667788888888765 444443333332222 23333 4555566666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 483 re~~sL~tENkELK~RLQa 501 (514)
..+..+..-|.|+.++||+
T Consensus 93 ~t~k~~~~lt~e~~~~lqq 111 (463)
T KOG1645|consen 93 KTNKEHVELTAELRAQLQQ 111 (463)
T ss_pred HHHHHHHhhhHHHHHhhhh
Confidence 6666677777777777765
No 254
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.77 E-value=37 Score=35.20 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=5.1
Q ss_pred CcchHHHhhhc
Q 010222 410 EFSGAELKKIM 420 (514)
Q Consensus 410 ~~s~~E~KKim 420 (514)
.|+.+..+++-
T Consensus 183 ~F~~e~v~~~S 193 (344)
T PF12777_consen 183 DFNPEKVRKAS 193 (344)
T ss_dssp TSSHHHHHHH-
T ss_pred CCCHHHHHHHh
Confidence 45555555543
No 255
>PRK10698 phage shock protein PspA; Provisional
Probab=64.32 E-value=1.2e+02 Score=30.06 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+..|+.+.......+..|+.++..|.....++|.+-..|
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L 139 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQAL 139 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444433333333
No 256
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.23 E-value=1.2e+02 Score=31.89 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
++..|..++..+..++.....++..++.+...+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~ 238 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELE 238 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 257
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.13 E-value=57 Score=26.83 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.||..|..+..+|..++..|..+...|..+-...|.+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777776666666666555544
No 258
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=63.85 E-value=54 Score=30.24 Aligned_cols=35 Identities=26% Similarity=0.481 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
-|-++|.++|..|+-+...+..-|+.|..+|.-||
T Consensus 25 iERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 259
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=63.82 E-value=44 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..|+.|+..|..|+..= -+.+....||..|+.++..|
T Consensus 27 ~~L~eEI~~Lr~qve~n-Pevtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHN-PEVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433321 23445555666665555433
No 260
>PRK14011 prefoldin subunit alpha; Provisional
Probab=63.55 E-value=38 Score=31.91 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=10.3
Q ss_pred CccccccCCCCcch
Q 010222 400 PAFSLEFGNGEFSG 413 (514)
Q Consensus 400 ~~~s~efG~g~~s~ 413 (514)
..+-.++|.|-|-+
T Consensus 70 dkVlVdIGtGy~VE 83 (144)
T PRK14011 70 DKAILGVGSDIYLE 83 (144)
T ss_pred CeEEEEccCCeEEE
Confidence 44778899998744
No 261
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=63.47 E-value=74 Score=28.56 Aligned_cols=19 Identities=26% Similarity=0.116 Sum_probs=10.9
Q ss_pred ChHHHHHHHHhHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSK 450 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSR 450 (514)
...+.+|++-.+..+-..-
T Consensus 19 ~~~~~~~~l~~~l~~~l~~ 37 (117)
T COG2919 19 RRVRRRRILTLVLLALLAL 37 (117)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3455566666666665443
No 262
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=63.39 E-value=31 Score=40.24 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 456 YISELEHKVQTLQTEATTLSA---------------------QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~---------------------QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
+|.++.+++..+..||..|.. ++..|+..+..+..||..||-+|..+..+..+|
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir 167 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIR 167 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777766655 344566666677777777777777666666655
No 263
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=63.19 E-value=1.6e+02 Score=29.05 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
...+|.++..|+........+...+++.+..|..++..|...|.
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444444444444444444444443
No 264
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.16 E-value=60 Score=33.01 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 435 R~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlL 481 (514)
-+|-.++-|+-+|---++|.+|+..+...-..+.+|...|..+++..
T Consensus 150 slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 150 TLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888776554455556555555555443
No 265
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=63.11 E-value=24 Score=33.02 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
|...|..++.|+.|...=-.++..|+.++..+...|+.|..|
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444455555555555555555555555555555555555544
No 266
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.03 E-value=31 Score=36.47 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QL 478 (514)
+.-+-.++..|+.+|..|+...
T Consensus 43 l~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 43 LETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555443
No 267
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=63.00 E-value=51 Score=33.08 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhh
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN-------------------QNNELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t-------------------ENkELK~RLQaLEQQaQLrDA 511 (514)
..|++||++||.+++.|......|..+-..|-.-+..+.. +..++..+|..+.+..-..|.
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~ 104 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADF 104 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred cCC
Q 010222 512 IIL 514 (514)
Q Consensus 512 L~~ 514 (514)
++|
T Consensus 105 ~~l 107 (234)
T cd07664 105 YLF 107 (234)
T ss_pred HHH
No 268
>PF14645 Chibby: Chibby family
Probab=62.80 E-value=24 Score=32.09 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
|.++.+.|+.||+-|+-+++.|..=++..++|..-++++
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777778777777777765444444444444433
No 269
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=62.79 E-value=48 Score=38.00 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.+|+++|+.|+.++..|..+|..++.++..-..+-.....++
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~ 123 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKI 123 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666555554444444333333
No 270
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=62.41 E-value=78 Score=37.89 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSA-------QLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~-------QLtlLQre~~sL~tENkELK~RL 499 (514)
+|-.-+.+.-++|+.+...+.+...+|..+|+.++.+...+.. .++.|++++..|..|..+|+..+
T Consensus 445 ~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~ 517 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTL 517 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566667778888777777777777777777766555333 34444444444555555544443
No 271
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=62.39 E-value=51 Score=38.82 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 470 ENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+..+|.++++.|+++..+|..-+.+||...-.|.+..
T Consensus 93 ~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~ 129 (829)
T KOG2189|consen 93 EIIDLEEQLEKLESELRELNANKEALKANYNELLELK 129 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444666666666666666666666666655444433
No 272
>PLN02320 seryl-tRNA synthetase
Probab=62.11 E-value=89 Score=34.99 Aligned_cols=47 Identities=19% Similarity=0.319 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQ--RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQ--re~~sL~tENkELK~RLQaLEQQa 506 (514)
|..+++.|+.|-+.+..++.... .+...|..|-++||.+|..||++.
T Consensus 105 ~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~ 153 (502)
T PLN02320 105 LQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL 153 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544311 134566677778888887777643
No 273
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.05 E-value=56 Score=29.56 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 440 LANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 440 LkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
..|+.-|.+.=.+ +..+++|..++..+-.+...|..++..+.++...+
T Consensus 41 ~~n~~lAe~nL~~-~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 41 AENEELAEQNLSL-EPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555443222 34555555555555555556666555555555555
No 274
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=62.04 E-value=71 Score=38.52 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=53.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSA-----QLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~-----QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
...-|-|.||+-..-++++..+|-+++|.+-+.|......|.. |-+.+++-...+..|-+|||++++...
T Consensus 1028 ~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr 1102 (1189)
T KOG1265|consen 1028 AGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKR 1102 (1189)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567888888899999999999999999988888887665 334445556677788889988887544
No 275
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.97 E-value=25 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 475 SAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 475 s~QLtlLQre~~sL~tENkELK~RL 499 (514)
..++..|++....|..+|..|+.++
T Consensus 74 ~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 74 MEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444555544443
No 276
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=61.82 E-value=16 Score=39.81 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSV-------------GLTNQNNELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~-------------sL~tENkELK~RLQaLEQQaQLrDA 511 (514)
.+.+.|++.+.+.|+..|..|..+++.|+.++. .+...++.+++++..|+.+.+....
T Consensus 289 ~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e~~~l~~~~~s~~~ 359 (411)
T KOG1318|consen 289 LQRARELENRQKKLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEESDSLENEQQSQET 359 (411)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhcchhhhcccccccc
Confidence 334555666666666666666666666654432 3445556666666655555544443
No 277
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.81 E-value=30 Score=29.78 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=20.4
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 447 ARSKERKM----RYISELEHKVQTLQTEATTLSAQLT 479 (514)
Q Consensus 447 qRSReRKK----qYLeELE~KVq~LqtENssLs~QLt 479 (514)
.+-|.||. ..+..|..++..|+.+|..|..++.
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455554 3556677777777777777766653
No 278
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=61.71 E-value=13 Score=30.80 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQ 477 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~Q 477 (514)
.|.+|+.++..|+.||+-|+..
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777666543
No 279
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=61.69 E-value=56 Score=30.17 Aligned_cols=43 Identities=12% Similarity=0.171 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|+.|+..+...+.....-...+..|+..+..+..+.+++..++
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456666666666666666666666666666666666665553
No 280
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=61.54 E-value=54 Score=26.83 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+..++..++++...+..||.+|+.++..|..
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444455555555555555555554433
No 281
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.50 E-value=40 Score=36.06 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTE------ATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 454 KqYLeELE~KVq~LqtE------NssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+..+++|+..+..|+.. ......++..+.+....|..+.++|+.++..|+.+.+
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555442 1234445555556666666666666666665554433
No 282
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.35 E-value=1.2e+02 Score=31.66 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 445 SAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 445 SAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.+..-++.+.+-|...+.+++.++.+..+...++..++.+...+.....+|+.+-..|.
T Consensus 190 ~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~ 248 (269)
T PF05278_consen 190 TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLS 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444443
No 283
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=61.23 E-value=2.8 Score=37.24 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+||.++..+.++.+.|. .+...|..|..+|+.+++.|+++
T Consensus 3 ~Ld~~k~~laK~~~~LE-------~~l~~l~~el~~L~~~l~eLe~~ 42 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLE-------SELESLQSELEELKEELEELEEQ 42 (118)
T ss_dssp -----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444 44444444555555555554443
No 284
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=61.15 E-value=63 Score=31.05 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~s 487 (514)
.+.++++++.|.-|+-.=.+|-.-..+|..+++..+..+..+..+|+.|..++..
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899998888888888888888888888888888888777776554443
No 285
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=60.97 E-value=1.3e+02 Score=33.40 Aligned_cols=67 Identities=30% Similarity=0.353 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS-------VGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~-------~sL~tENkELK~RLQaLEQQaQ 507 (514)
+|-.+|+.--.|-.+...+|..++.+|-++...|.++...|+.+. ..|..+-.+|+.+-..+||+++
T Consensus 130 ~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~ 203 (499)
T COG4372 130 QNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ 203 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777787777777777777776666655444 3444566666666666666554
No 286
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=60.82 E-value=32 Score=36.18 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.|+.++..++.++..|..++..|..+...+..+..+|+.++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444455555555555555443
No 287
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=60.71 E-value=25 Score=28.41 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.....++..|+.||..|.+++..++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788888899999998887653
No 288
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=60.69 E-value=18 Score=44.24 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 445 SAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 445 SAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+++|-=.--.+.|.++|.++...+.++..-...|+.||++...|..--+||+++++.|.
T Consensus 1236 ~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1236 SLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333344556666666666666666667777888888888888888888877653
No 289
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=60.56 E-value=37 Score=35.18 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=46.1
Q ss_pred hHHHhhhc-chhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 413 GAELKKIM-ANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQT-LQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 413 ~~E~KKim-~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~-LqtENssLs~QLtlLQre~~sL~t 490 (514)
..|+.|.| .-+.|-.-+..-.++.-|+|..---+-|-++||++.-.+|..+.++ +..|..+|.+++..|+.++..|.+
T Consensus 163 ~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~ 242 (289)
T COG4985 163 ERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRA 242 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34554443 3444443344446777888888888888888888877777776552 334444444444444444444443
Q ss_pred H
Q 010222 491 Q 491 (514)
Q Consensus 491 E 491 (514)
|
T Consensus 243 e 243 (289)
T COG4985 243 E 243 (289)
T ss_pred h
Confidence 3
No 290
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=60.42 E-value=65 Score=31.75 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=42.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
|++-|.++..-|+|=+.|..+||.+=..|.....-.+.||..|++.+..+-
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~y 168 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFY 168 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888899999999999999999988888888888888887665543
No 291
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=59.83 E-value=20 Score=30.58 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 476 AQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 476 ~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.-+..||+|++.++-|+-+||++|..++++
T Consensus 8 ~lL~~lQnEWDa~mLE~f~LRk~l~~~rqE 37 (70)
T PF08606_consen 8 SLLSTLQNEWDALMLENFTLRKQLDQTRQE 37 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777666554
No 292
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=59.80 E-value=71 Score=36.87 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 442 NRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLT--------------LLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 442 NRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLt--------------lLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
--++++..+.|=.+.|.+||.+++.+..|...-+++.. ..+.+.+.+..|-+.+|+||..|+..+.
T Consensus 344 Elea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 344 ELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34788888888888888888888888887766543211 1234677788899999999999988877
Q ss_pred hhhh
Q 010222 508 LRDG 511 (514)
Q Consensus 508 LrDA 511 (514)
+.+-
T Consensus 424 WTEM 427 (832)
T KOG2077|consen 424 WTEM 427 (832)
T ss_pred HHHH
Confidence 6553
No 293
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=59.74 E-value=25 Score=36.44 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+++..+.+...|..++..|+.++.....+...|+.+++.
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~ 274 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEE 274 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444433
No 294
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.65 E-value=1.2e+02 Score=34.05 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+.+.+|+.+++.++.+...+..++..++++...+..+..+++.++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555444444443
No 295
>smart00340 HALZ homeobox associated leucin zipper.
Probab=59.63 E-value=20 Score=28.18 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.++.|.+-+..|..||+.|+.+++.|..
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888888888887764
No 296
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=59.23 E-value=1.3e+02 Score=29.85 Aligned_cols=87 Identities=22% Similarity=0.364 Sum_probs=54.4
Q ss_pred cCCCCcchHHHhhhcchhHHhhhhccChHHHHHHH---HhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 406 FGNGEFSGAELKKIMANEKLAEIALTDPKRAKRIL---ANRQ------SAARSKERKMRYISELEHKVQTLQTEATTLSA 476 (514)
Q Consensus 406 fG~g~~s~~E~KKim~~ekLaElAl~DpKR~KRiL---kNRE------SAqRSReRKKqYLeELE~KVq~LqtENssLs~ 476 (514)
+++++.|..|+++++ +.|......=|--+|-++ +-.+ +..|+|-.|. .++-+.++..|..++..|..
T Consensus 69 L~~A~~T~~ERR~~~--~~l~~y~~~~P~~vRPL~QlWRe~Q~lql~L~eEr~Ry~rL--QqssD~~lD~Lr~qq~~Lq~ 144 (179)
T PF13942_consen 69 LANAEPTPAERRQMV--DRLNSYSLQFPASVRPLLQLWREQQVLQLQLSEERARYQRL--QQSSDSELDALRQQQQRLQY 144 (179)
T ss_pred hcCCCCCHHHHHHHH--HHHHHhhhhcCHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 567888999999998 455555544444444332 2222 3344444444 46666777788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK 496 (514)
++....+++..|+.--+.|-
T Consensus 145 qL~~T~RKLEnLTDIERQLS 164 (179)
T PF13942_consen 145 QLDTTTRKLENLTDIERQLS 164 (179)
T ss_pred HHHHHHHHHhhhhHHHHHHh
Confidence 77777777766665544443
No 297
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=59.10 E-value=1.6e+02 Score=28.24 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+|..+|..|+.+|..|..++..+..+...|.....+|+.++..|.
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 355555566666666665555555566666666666666665553
No 298
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=59.09 E-value=45 Score=38.70 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 438 RILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ---LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 438 RiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~Q---LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
-+|.-++.||.-|-|-.+.+.+ .+-+.|.+.-.-|..+ .+.|+.+...|++|..+||.++.+||.
T Consensus 128 svLteqVeaQgEKIrDLE~cie--~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEk 195 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCIE--EKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEK 195 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH--HHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 4788889999888777665433 3333333222222222 267888899999999999999988773
No 299
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=59.01 E-value=1.2e+02 Score=32.09 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 438 RILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 438 RiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QL 478 (514)
+.+.-|+--....+--.+|-.+||.++.+|++.|..|..++
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~n 68 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRN 68 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555666666666666665555554433
No 300
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=58.92 E-value=1.4e+02 Score=27.93 Aligned_cols=58 Identities=10% Similarity=0.239 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
|+.=.+.|+.|..++.+...-...+..+++.++.+...+..+...+...++.|+...-
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333467888888888888888888888888888888888888888888887776543
No 301
>PRK02224 chromosome segregation protein; Provisional
Probab=58.87 E-value=1.3e+02 Score=34.38 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.+++.+++.++.+...|..++..|+.....+..+..+++.++..
T Consensus 595 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333334443333
No 302
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=58.63 E-value=29 Score=35.54 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
-+..+..+|+.+-+.|+.++.++... +.+...|+.||+.||.-|.
T Consensus 63 ~~~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 63 EFLKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence 34455555555555555555544433 3456678888888887663
No 303
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=58.62 E-value=1.6e+02 Score=28.57 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTLS-------AQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssLs-------~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+-.-|.++..|++.++..+..++.....|. .++..++.++..+.....+.+.+.+
T Consensus 106 ~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 106 AFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555442 3444444444444444444444333
No 304
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=58.41 E-value=86 Score=27.25 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+|-.++..-+.|+..|..-++.|+..+.....-|+.|..++..++.
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777777777777777777666655544
No 305
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=58.30 E-value=48 Score=38.16 Aligned_cols=64 Identities=27% Similarity=0.344 Sum_probs=49.0
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
+.|-|-+--|.+| +|-.||.+|.-|+.-|+.++...++-...|..++++|.++|..+.+++..+
T Consensus 313 LLetKNALNiVKN----------------DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 313 LLETKNALNIVKN----------------DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHhhhhHHHHHHH----------------HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888 788888888888888888888877777777777777777777766655443
No 306
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.26 E-value=1.1e+02 Score=25.42 Aligned_cols=41 Identities=10% Similarity=0.251 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.++...+..|..+..++.....++..|..+...|+.+++.+
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666666666666666666554
No 307
>PRK02224 chromosome segregation protein; Provisional
Probab=58.20 E-value=1.1e+02 Score=35.00 Aligned_cols=9 Identities=33% Similarity=0.468 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010222 466 TLQTEATTL 474 (514)
Q Consensus 466 ~LqtENssL 474 (514)
.|+.+...|
T Consensus 541 ~l~~e~~~l 549 (880)
T PRK02224 541 ELRERAAEL 549 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 308
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=58.19 E-value=36 Score=32.94 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
-++=.|++++.|+.+|..|..+++.|.. ...+|..+-.++..+.
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4566788888999999988888877653 4456666666665553
No 309
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=57.50 E-value=1e+02 Score=29.23 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL 488 (514)
+..++.|...+..++..++.+...+
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333
No 310
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.31 E-value=39 Score=38.35 Aligned_cols=48 Identities=31% Similarity=0.433 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLL----------------------------QRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlL----------------------------Qre~~sL~tENkELK~RLQaLE 503 (514)
-+.+||..+..|+.++..|..+|..+ +..+..|..||..|+.+|..|+
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555555555556666665555541 2577788889999998887665
No 311
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=57.30 E-value=1.1e+02 Score=25.39 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.|....+.....++..+......|.+|..+|..|+.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444443
No 312
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=57.19 E-value=32 Score=36.68 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tE 491 (514)
|+.+++.|+.++..|..++..++++...+..|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333333
No 313
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.08 E-value=95 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
++......+..++.++..|..+++.|.+..+-+|
T Consensus 158 ql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 158 QLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333445566666677777777777766655444
No 314
>PRK10722 hypothetical protein; Provisional
Probab=56.99 E-value=84 Score=32.48 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=47.7
Q ss_pred cCCCCcchHHHhhhcchhHHhhhhccCh---HHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 406 FGNGEFSGAELKKIMANEKLAEIALTDP---KRAKRILANRQS------AARSKERKMRYISELEHKVQTLQTEATTLSA 476 (514)
Q Consensus 406 fG~g~~s~~E~KKim~~ekLaElAl~Dp---KR~KRiLkNRES------AqRSReRKKqYLeELE~KVq~LqtENssLs~ 476 (514)
+++...|..|+.+++. .|--.....| +-+-++++.++. +.|.|-.|.+ ++-+.++..|..++..|..
T Consensus 115 L~~a~~t~~err~~l~--rl~~~~~~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQ--q~sD~qlD~lrqq~~~Lq~ 190 (247)
T PRK10722 115 LADAKITPAERRQIVE--RLNAYSLQIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQ--QSSDSELDALRQQQQRLQY 190 (247)
T ss_pred HcCCCCChHHHHHHHH--HHhhcccccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHH
Confidence 5566777888888883 4443333333 344456666655 4444444443 3344566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 477 QLtlLQre~~sL~tENkEL 495 (514)
++..+.++++.|+.--+.|
T Consensus 191 ~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 191 QLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6655555555555444433
No 315
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.98 E-value=65 Score=28.75 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..+..|..++..++.++..|..+.++++.++..|
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444
No 316
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=56.96 E-value=62 Score=38.65 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+|..|.-+...|++|.+.|...+..+|.+...-.+|..++..++..+++
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444444444444444444444444455555555555555555554444
No 317
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=56.86 E-value=65 Score=35.67 Aligned_cols=53 Identities=26% Similarity=0.410 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHK------------VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 446 AqRSReRKKqYLeELE~K------------Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
|.+-++.-++|++.||.+ .+.|..|+..|.+++..++.+...|..+..++..+
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777653 23333444444444444444444444444444433
No 318
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.84 E-value=1.7e+02 Score=36.37 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred Ccccccchhhh-hcccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCccccccCCCCcchHHHhhhcchhHHhhhhcc
Q 010222 354 TRHYRSVSMDS-FMGKLNFGDESPKLPPSPGTRPGQ-LSPSNSIDANSPAFSLEFGNGEFSGAELKKIMANEKLAEIALT 431 (514)
Q Consensus 354 ~rH~RS~SmDs-~~~~l~~~~~~~~~~~s~~~~~~~-~~~S~s~dg~~~~~s~efG~g~~s~~E~KKim~~ekLaElAl~ 431 (514)
.|-+|-+++|. +|+. ++-+.+.+....++ .+.+..++| .++++..++-..-..-.....
T Consensus 735 ~rr~RVvTL~G~lIe~------SGtmtGGG~~v~~g~mg~~~~~t~-------------~s~~~v~~le~~l~~~~~~~~ 795 (1293)
T KOG0996|consen 735 DRRWRVVTLDGSLIEK------SGTMTGGGKKVKGGRMGTSIRVTG-------------VSKESVEKLERALSKMSDKAR 795 (1293)
T ss_pred CCceEEEEecceeecc------cccccCCCCcCCCCCCCCccccCC-------------CCHHHHHHHHHHHHHHHHHHH
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 432 DPKRAKRILANRQSAARSKERKMRY-ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqY-LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
.-+...--+-+|..+.|-+.+-..- ++.|+..++.+..+.+.|..+|..++......+..++.|+..-..++.-.+-.+
T Consensus 796 ~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e 875 (1293)
T KOG0996|consen 796 QHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVE 875 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 010222 511 GI 512 (514)
Q Consensus 511 AL 512 (514)
+|
T Consensus 876 ~~ 877 (1293)
T KOG0996|consen 876 EL 877 (1293)
T ss_pred HH
No 319
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=56.75 E-value=1.4e+02 Score=33.39 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+-.....+|+.+++.|..+..........+......|..+..+++...+.|+++.
T Consensus 100 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~ 154 (779)
T PRK11091 100 RDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQS 154 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666655554444455555566666666666555555443
No 320
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=56.74 E-value=42 Score=29.90 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
+..|+.++..+..++..++..+..+..+.+.||.
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444443
No 321
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.73 E-value=1e+02 Score=29.97 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEAT 472 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENs 472 (514)
|.++.+.+.+|+.++..|+.|..
T Consensus 105 R~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 105 REELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 322
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.66 E-value=1.4e+02 Score=34.69 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 440 LANRQSAARSKERK-MRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 440 LkNRESAqRSReRK-KqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
..+|..+.+.+..+ +..+.+|+.++..|+.++..|..++..+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333 34456666666666666666666665544
No 323
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.58 E-value=37 Score=36.26 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|+.+.+.|+.++..|..++..++.++..+..|...|+.+|..|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444556666666666666666666666666666666666554
No 324
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=56.54 E-value=86 Score=36.16 Aligned_cols=48 Identities=27% Similarity=0.479 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..|..++..|+.+...|..++..+++++.....++..+..+|..++.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 290 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEE 290 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777666666666666655443
No 325
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=56.51 E-value=55 Score=39.06 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=4.6
Q ss_pred HHHHHHHHhHH
Q 010222 434 KRAKRILANRQ 444 (514)
Q Consensus 434 KR~KRiLkNRE 444 (514)
+++-|+|.|+-
T Consensus 105 ~sQiriLQn~c 115 (1265)
T KOG0976|consen 105 ESQIRILQNKC 115 (1265)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 326
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=56.41 E-value=73 Score=36.12 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
..+.+||.++..+...+..|..++..|..++..|..+...+|.+
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33455555555555555555555555555555555555554443
No 327
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=56.09 E-value=95 Score=35.19 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhc
Q 010222 447 ARSKERKMRYISEL---EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ-LRDGI 512 (514)
Q Consensus 447 qRSReRKKqYLeEL---E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ-LrDAL 512 (514)
..+.+++++|-.|| +..+...+++-..|--++...+++...+..+++.++..++.||+|.| ++|+|
T Consensus 38 ed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l 107 (604)
T KOG3564|consen 38 EDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDML 107 (604)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34556666665555 44444445666667788999999999999999999999999997665 45554
No 328
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=55.95 E-value=25 Score=31.49 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhcC
Q 010222 455 RYISELEHKVQTLQTEATTLSA----------QLTLLQRDSVGLTNQNNELKFRLQAME-QQAQLRDGII 513 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~----------QLtlLQre~~sL~tENkELK~RLQaLE-QQaQLrDAL~ 513 (514)
++-.+||.+++.+......+.. +|..|..+...+.....+|...|..++ ||..|-+.|.
T Consensus 26 ~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~ 95 (116)
T PF05064_consen 26 KWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLD 95 (116)
T ss_dssp -----------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 329
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.91 E-value=53 Score=35.43 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
-+++|.+.-++|..-.++|.+.++.|+++...|.+.-..|+.+.+
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 334444444444444555555555555555555555555555544
No 330
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=55.90 E-value=50 Score=36.65 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
++|+..++.+..++..++....++..++..++-++..|..+-++||..+++
T Consensus 442 ~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 442 QQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666777666654
No 331
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=55.73 E-value=2.1e+02 Score=28.94 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+....+|.|++.+.+.|..|-..+..+|.....++..|....++++...
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888888888888877777777666666666666555554443
No 332
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=55.53 E-value=61 Score=31.37 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLL-----QRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlL-----Qre~~sL~tENkELK~RLQaLEQ 504 (514)
+.|+.+++.|+.....+..++... .++...|++....|.++|..+|+
T Consensus 95 ~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 95 NTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444443333322 24555555555555555555443
No 333
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=55.46 E-value=54 Score=27.95 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
|...|..|..|..+|..++..++.++..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999998888888777766
No 334
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.44 E-value=1e+02 Score=35.85 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=31.2
Q ss_pred hHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAA-RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 433 pKR~KRiLkNRESAq-RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
..++|..+..|.... +-+++..+.|.+|+.+.+.|+.....|..+++.+......|+.
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554432 3344445566666666666666666666666555443333333
No 335
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.41 E-value=1.9e+02 Score=31.95 Aligned_cols=66 Identities=20% Similarity=0.221 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 444 QSAARSKERKMRYISELEHKVQTLQTEATT-LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 444 ESAqRSReRKKqYLeELE~KVq~LqtENss-Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
.+++..++|-.+--..-|.|++.-...-+. ...+-..|+.+.+.|..|..+.|.+++.|..|..++
T Consensus 316 ~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~ 382 (442)
T PF06637_consen 316 QASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555444444444444433322222 122335667777777777777777777777666654
No 336
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=55.25 E-value=98 Score=27.69 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQ--------LTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~Q--------LtlLQre~~sL~tENkELK~RLQ 500 (514)
.++|..+..++.|...|.+. +....++...+..+|..|+.+|.
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~ 61 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK 61 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555443 33444455555555666655554
No 337
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=55.06 E-value=1.4e+02 Score=30.12 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
++..+..+......|..++..|+.++..+.++...|+.+...-+-+..+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v 152 (225)
T COG1842 104 LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKV 152 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555544444433333
No 338
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.00 E-value=61 Score=28.10 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
.-+..-+..|+.+++.++.+...|..++..++.+...|..+..+|
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777777666666666555555554444
No 339
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=55.00 E-value=1e+02 Score=30.84 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tE 491 (514)
|-.+...++..|+.|...+..||..|++++..|..+
T Consensus 148 ~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 148 RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 340
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=54.99 E-value=1.1e+02 Score=30.60 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 010222 491 QNNELKFRLQAME 503 (514)
Q Consensus 491 ENkELK~RLQaLE 503 (514)
|...+.++|..||
T Consensus 109 eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 109 EVAQYQQKLKELE 121 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444443
No 341
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=54.94 E-value=1.7e+02 Score=28.47 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
++..|+.||.+|+.-+...+.-....+..-+
T Consensus 71 qi~~Lq~EN~eL~~~leEhq~alelIM~KyR 101 (181)
T PF05769_consen 71 QIRQLQQENRELRQSLEEHQSALELIMSKYR 101 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444444333
No 342
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=54.69 E-value=55 Score=37.31 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
|++|.+|+.....|.++|.+|...+..-+.-...|.....+|+.+|..+..+..++
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788999999999999888877777666666666666666666666555554444
No 343
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.67 E-value=1.4e+02 Score=36.41 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
|.+++.++..++.+...+..++..++.
T Consensus 226 l~~~q~kie~~~~~~~~le~ei~~l~~ 252 (1311)
T TIGR00606 226 ITSKEAQLESSREIVKSYENELDPLKN 252 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444434333333
No 344
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=54.61 E-value=1.5e+02 Score=26.17 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
.+.++..++..+..|.+|..++..-+.-...+...+++++.+.+ +.+..++.+|
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e--~~~e~ik~~l 87 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSE--ERRESIKTAL 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34455666666666777777776655555555555556665444 3344555554
No 345
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.51 E-value=1.7e+02 Score=32.72 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlL 481 (514)
++..++.++..+..++..+
T Consensus 68 ~l~~~~~~~~~~~~~~~~l 86 (475)
T PRK10361 68 EVRSLQSINTSLEADLREV 86 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 346
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.44 E-value=72 Score=30.19 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tE 491 (514)
+|..+|..+++..+.+...|..+
T Consensus 161 ~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 347
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=54.28 E-value=23 Score=29.31 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
..|..||+.|..|+.|-..+ +..|-.++..|..+|++|..+|
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t---L~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT---LKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccccceee
Confidence 45677888888888887653 3344566667777777777665
No 348
>PRK14140 heat shock protein GrpE; Provisional
Probab=54.20 E-value=78 Score=31.20 Aligned_cols=20 Identities=20% Similarity=0.337 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQ 477 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~Q 477 (514)
++|+.++..|+.+...|..+
T Consensus 40 ~~l~~~i~~l~~ei~elkd~ 59 (191)
T PRK14140 40 DEEQAKIAELEAKLDELEER 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 349
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=54.19 E-value=2e+02 Score=27.41 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=34.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QL 478 (514)
.+|..+|...-+.|.+.+..=.+.+.+.|.++...+.|...+..+.
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777888888888888888888888888887766554
No 350
>COG5293 Predicted ATPase [General function prediction only]
Probab=54.17 E-value=1.3e+02 Score=34.15 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=51.1
Q ss_pred HHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKM-RYISELEHKVQTLQTEATTLSA---------QLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 437 KRiLkNRESAqRSReRKK-qYLeELE~KVq~LqtENssLs~---------QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
++|+.||-+=-.+.-.|. .-+.+++.+++.|..+.+++.+ +++.|+++...++.|..+|+.|++.|.+--
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~ 409 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLH 409 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 567777766655554443 3355566666666655555433 566788888889999999999998887766
Q ss_pred Hhhhhc
Q 010222 507 QLRDGI 512 (514)
Q Consensus 507 QLrDAL 512 (514)
.+++-|
T Consensus 410 ~~~~~i 415 (591)
T COG5293 410 ALDQYI 415 (591)
T ss_pred HHHHHH
Confidence 665543
No 351
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.13 E-value=64 Score=35.58 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhh
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN------QNNELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~t------ENkELK~RLQaLEQQaQLrDA 511 (514)
+++++++.++.+...+.+++..++.++..|.. |-.+|..+++.|....+|+++
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~ 230 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLREL 230 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHH
Confidence 33344444444444444444444444444433 223355555555544444443
No 352
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.05 E-value=82 Score=40.54 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=55.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 437 KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|-...-.+.++++++-=++.+...|++++.|+.|+.+|...+..+.+....+..|..|+..++..+.
T Consensus 1642 k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1642 KELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3355577899999999999999999999999999999999999888888777777777777776544
No 353
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=53.85 E-value=64 Score=29.02 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=6.2
Q ss_pred cccccCCCCc
Q 010222 402 FSLEFGNGEF 411 (514)
Q Consensus 402 ~s~efG~g~~ 411 (514)
+-+.+|.|-|
T Consensus 78 V~v~lG~g~~ 87 (140)
T PRK03947 78 VIVSLGAGYS 87 (140)
T ss_pred EEEEcCCCEE
Confidence 4566677755
No 354
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=53.78 E-value=1.3e+02 Score=33.39 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+.+-.+.-.|..|...+.++++..+.++..|..||..|..+.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555554443
No 355
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.74 E-value=65 Score=32.09 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 481 LQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 481 LQre~~sL~tENkELK~RLQaL 502 (514)
+|.+.+.|..|-+..+.||..+
T Consensus 121 mQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 121 MQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666554
No 356
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=53.56 E-value=1e+02 Score=37.49 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=13.2
Q ss_pred CCCCCCCccCCCCCCCCCCc
Q 010222 179 GESLPPRNKHRRSNSDIPFG 198 (514)
Q Consensus 179 ~~~LpPrk~HRRS~SD~p~G 198 (514)
|--|=-|+.-||--+-||+-
T Consensus 559 gkqLLq~g~l~rRvTiIPLn 578 (1174)
T KOG0933|consen 559 GKQLLQRGNLRRRVTIIPLN 578 (1174)
T ss_pred HHHHhhcccccceeEEEech
Confidence 34456667777777778753
No 357
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.22 E-value=1.3e+02 Score=36.20 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=10.1
Q ss_pred CCcccccCCCccccccCCC-CCC
Q 010222 110 PTHSRSLSQPSSFFSLDSL-PPL 131 (514)
Q Consensus 110 ~~hsrslsqp~~ffs~dsl-ppl 131 (514)
..|-|.=+-+..+|+=..- ||+
T Consensus 53 ~k~lRa~~~~DlIf~g~~~r~~~ 75 (1163)
T COG1196 53 AKNLRASKMSDLIFAGSGNRKPA 75 (1163)
T ss_pred hhhhhccCCcceeeCCCCCCCCC
Confidence 3555554444445544333 444
No 358
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=53.18 E-value=42 Score=35.28 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
++.+|+.++++|+..+..|..++..++.+...+..+++.|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 9 RNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344567777777777777777777777777777777776653
No 359
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=53.16 E-value=18 Score=35.64 Aligned_cols=51 Identities=22% Similarity=0.235 Sum_probs=32.2
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
+-.|.+|..+++ .+..++.+.||+.+|+.|+.+..++..++..|-..+...
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~ 139 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP 139 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 445555554444 566667778888888888877777766666665433333
No 360
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.15 E-value=1.4e+02 Score=36.07 Aligned_cols=8 Identities=25% Similarity=0.281 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 010222 188 HRRSNSDI 195 (514)
Q Consensus 188 HRRS~SD~ 195 (514)
|+-+-+||
T Consensus 117 ~~~~~~dI 124 (1163)
T COG1196 117 EKVRLKDI 124 (1163)
T ss_pred cEeeHHHH
Confidence 33333344
No 361
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=53.11 E-value=1.4e+02 Score=38.66 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QL 478 (514)
+++|+++.+.|+.+...|..++
T Consensus 1486 ~e~l~renk~l~~ei~dl~~~~ 1507 (1930)
T KOG0161|consen 1486 LEELRRENKNLSQEIEDLEEQK 1507 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 362
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=53.04 E-value=1.1e+02 Score=30.22 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
=.-|++-|+.||.+|.+.+.-..+....|...+...........+.+.+++.|.
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~ 115 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLK 115 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999988888888777766555555555555555444443
No 363
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=52.91 E-value=4.3 Score=36.10 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=1.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~s 487 (514)
-.+-+.+||..+..|+.+...|..++..|+.+...
T Consensus 11 laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 11 LAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp --------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34456788888888888888888888777765544
No 364
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=52.85 E-value=1e+02 Score=28.98 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
+.+....+..|...-.....+-..|...+..|..|...|..-.+++....+.-+
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~ 76 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFE 76 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 334444444444444444445555555555555555555555555555444433
No 365
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=52.79 E-value=1e+02 Score=32.18 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=39.5
Q ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 439 ILANRQSA-ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 439 iLkNRESA-qRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
-|+|||.+ +-+|.||+.-..++ ..|+...- -..+|..|++++..++.|+.....+|..+..+ .||+|+
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~-~lKEa~ 200 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ-KLKEAY 200 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH-HHHHHH
Confidence 46788765 45566665544333 33332222 24466777777777777777777777666544 455554
No 366
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=52.75 E-value=1.1e+02 Score=28.28 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSA 476 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~ 476 (514)
...|+.....|+.++..|..
T Consensus 29 ~~~l~~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 29 ESSLEQENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544
No 367
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=52.71 E-value=81 Score=30.85 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
+++.+|+.+.+.|+.++..|..+....+.++..|..--.
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~ 149 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMN 149 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777777777777776666655443
No 368
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=52.44 E-value=71 Score=35.39 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL----------LQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtl----------LQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
++|+-|..|-.-+-..+-++|.+|+.|+.+...|..-|.. |+.++.....+...|..+...|.+.++-+
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~sr 477 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQVSR 477 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 7788888777656567778888888888888777765542 55555555555555555555555544443
No 369
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=52.31 E-value=41 Score=31.63 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSA-----QLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~-----QLtlLQre~~sL~tENkELK~RLQa 501 (514)
..+|..++.+|..|...++. +-+.|+|+++.|+.|.++++..+..
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777666554 4455667777777777766666543
No 370
>PF14645 Chibby: Chibby family
Probab=52.26 E-value=59 Score=29.59 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
++..|+.+|..|.+++.+|+-++.-|..=..+...+...++
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~e 112 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLE 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444333
No 371
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.06 E-value=73 Score=32.83 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLT----NQNNELKFRLQAMEQ 504 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~----tENkELK~RLQaLEQ 504 (514)
+|...+..+|++..+|..++..+++...... +-++.|..||+.|.-
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~ 103 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRM 103 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555 445555555555543
No 372
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=51.91 E-value=95 Score=32.21 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlL 481 (514)
+.+|+.+++.++.+...+..++..+
T Consensus 36 ~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 36 KEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555544444444444333
No 373
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=51.87 E-value=2.5e+02 Score=27.73 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..-...|..|+.++...+.........+..|+.++..|..+....|.+...+...
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666666666666666666666666666666555443
No 374
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=51.78 E-value=1e+02 Score=30.28 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010222 480 LLQRDSVGLTNQNNELK 496 (514)
Q Consensus 480 lLQre~~sL~tENkELK 496 (514)
.|++++..+...|-+|.
T Consensus 179 ~Le~~W~~~v~kn~eie 195 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIE 195 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444433333333
No 375
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=51.77 E-value=34 Score=34.69 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
.|+++||..|+.+....+.....|..+...|++++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl 135 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARL 135 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888777766555555544444443333
No 376
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.76 E-value=1.2e+02 Score=36.75 Aligned_cols=44 Identities=27% Similarity=0.364 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+.+|..+..|+..-.++.+-+..||.++..|+.++.+||+|+..
T Consensus 1008 ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1008 EKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 45556666666666677778888999999999999999998743
No 377
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=51.75 E-value=78 Score=35.35 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=12.3
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKM 454 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKK 454 (514)
.|-..+|.++.+|.....-|.+|-
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 378
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.72 E-value=1.5e+02 Score=36.34 Aligned_cols=67 Identities=22% Similarity=0.158 Sum_probs=35.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHK--------------VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~K--------------Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
.+-+|-.|.||.--..--+++-.-++++-.| +++|+.+...|..++..|+..-..|+.|+.+|...
T Consensus 372 ~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e 451 (1195)
T KOG4643|consen 372 DRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEE 451 (1195)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777766555555555555544444 44444444444444444444445555555555444
Q ss_pred H
Q 010222 499 L 499 (514)
Q Consensus 499 L 499 (514)
+
T Consensus 452 ~ 452 (1195)
T KOG4643|consen 452 T 452 (1195)
T ss_pred H
Confidence 4
No 379
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=51.48 E-value=46 Score=35.88 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhc
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME-QQAQLRDGI 512 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE-QQaQLrDAL 512 (514)
+|..|..+..++.++|.+-.+++..+..|...+|.-+..|. ++++|+++|
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l 198 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGL 198 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 380
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=51.48 E-value=89 Score=32.52 Aligned_cols=52 Identities=12% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
-|+.+-.++..|+.||..+..+.......+..|..|...+..++..+..+.+
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888888888888888888888888888887777776665443
No 381
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.38 E-value=96 Score=34.05 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=43.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+||.+.+++.=+. -|+++.+|..+-..-+-.|+.|...|..||+.-..+......+...|..+|+
T Consensus 113 E~khrKli~dLE~---dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLe 177 (561)
T KOG1103|consen 113 EKKHRKLIKDLEA---DREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLE 177 (561)
T ss_pred HHHHHHHHHHHHH---HHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333 3456666666666667788888888888888877777777777777766664
No 382
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=51.23 E-value=2.7e+02 Score=28.08 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=34.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QL 478 (514)
.+|.++|..+-+.|...|+.=++...+.|.+++.++.+...+..+.
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888777777888888888877777765543
No 383
>PRK15396 murein lipoprotein; Provisional
Probab=51.15 E-value=1.1e+02 Score=26.52 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.+++|..+|+.|..+...|...+..++.+.+....|-..--+||..+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~ 72 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQ 72 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777776666666666666666544
No 384
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.03 E-value=60 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
|+.|...|..++...+++...|..||+
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 344555555555555555555555554
No 385
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=51.00 E-value=1.7e+02 Score=27.27 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 488 LTNQNNELKFRLQAME 503 (514)
Q Consensus 488 L~tENkELK~RLQaLE 503 (514)
+..|..++..+...|.
T Consensus 65 ~~~e~~~r~e~k~~l~ 80 (131)
T PF11068_consen 65 FEQEKQERLEQKNQLL 80 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 386
>COG4420 Predicted membrane protein [Function unknown]
Probab=50.98 E-value=56 Score=32.56 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=37.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
|-.||++++---.=+..|-..|.. +.|...|.+++..|....-.+..|+..|++.+..++-+....
T Consensus 109 mSQNRQa~rDr~~a~~d~qvnlka-----E~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~ 174 (191)
T COG4420 109 MSQNRQAERDRLRAELDYQVNLKA-----EQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADE 174 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccH
Confidence 457887655433333344433333 345566777777777666666667777776666555444433
No 387
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=50.91 E-value=76 Score=29.18 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 486 VGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 486 ~sL~tENkELK~RLQaLEQ 504 (514)
+.|..+..+|+.|+..|+.
T Consensus 86 ~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 86 DELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444445555554443
No 388
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.88 E-value=1.5e+02 Score=27.00 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|..+...-...|..++++++.|.=.|..|..|++.|..
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444555555555555555554433
No 389
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.73 E-value=83 Score=28.90 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
|+++.++-..|....-.+..+++.+...-..|..|..+|+.+|+.|+.++
T Consensus 74 l~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 74 LEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44444555555555555666666666666677777778888887776543
No 390
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=50.72 E-value=1.5e+02 Score=24.83 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkE 494 (514)
+.++++.++.++.+...+..+++.+-.+...+...-+.
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444444444444444444444444433333
No 391
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=50.46 E-value=2.6e+02 Score=27.50 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERK-MRYISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 448 RSReRK-KqYLeELE~KVq~LqtENssLs~QLtlL 481 (514)
+.+.|| +....+++.++.....+...+..++..|
T Consensus 74 r~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 74 RERLRKSQEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 4444455555555554444444444443
No 392
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=50.37 E-value=1.6e+02 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
|......-+.++..|.++++.|.++.
T Consensus 33 Lq~~~~~t~~~~a~L~~qv~~Ls~qv 58 (70)
T PF04899_consen 33 LQHMFEQTSQENAALSEQVNNLSQQV 58 (70)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444443333333
No 393
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.30 E-value=81 Score=35.86 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
|++|+.++..++.+...|..++..+..+......++.+|..+
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~ 378 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEE 378 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444333
No 394
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=50.21 E-value=2.6e+02 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=35.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~Q 477 (514)
.+|..+|...-+.|.+.|..=.+.+.+.|.++..-+.|...+..+
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~ 127 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQA 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777888888888888888888888888888777553
No 395
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=50.13 E-value=1.3e+02 Score=32.09 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..|..-+.....+|..|..++..|++.+..+..+++-|+.++..+
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 445556666666666666666666666666666666666666543
No 396
>PF13166 AAA_13: AAA domain
Probab=50.06 E-value=1.9e+02 Score=32.19 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+.+++..+..++.+...+..++..++.+...+..+...++.++..|+.
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 397
>PRK01156 chromosome segregation protein; Provisional
Probab=49.90 E-value=2.2e+02 Score=32.85 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=4.5
Q ss_pred hHHHhhhc
Q 010222 413 GAELKKIM 420 (514)
Q Consensus 413 ~~E~KKim 420 (514)
+.++++++
T Consensus 148 ~~~r~~~l 155 (895)
T PRK01156 148 PAQRKKIL 155 (895)
T ss_pred HHHHHHHH
Confidence 45566655
No 398
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.82 E-value=84 Score=28.34 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
|-.||++++.-++-+..|-..|.. +.|+..|.+++..+..+......+..
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~a-----e~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKA-----EQEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 447888877544444444433332 23445555555555544444444433
No 399
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=49.73 E-value=73 Score=28.61 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 470 ENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
....+..+++.++.++..|..+|..|+.++..|+..
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444555555555555555555555555555544
No 400
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=49.71 E-value=59 Score=35.44 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 010222 491 QNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 491 ENkELK~RLQaLEQQaQLrDAL 512 (514)
+...|++||+.|+-|++.+|..
T Consensus 344 ~~~~~~~~i~k~~~q~~~ke~n 365 (391)
T smart00435 344 QIERLEERIEKLEVQATDKEEN 365 (391)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 4456888888888888887743
No 401
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=49.69 E-value=93 Score=33.06 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtl 480 (514)
|-+++..++-++.-|+.+++.
T Consensus 91 Lrqkl~E~qGD~KlLR~~la~ 111 (319)
T PF09789_consen 91 LRQKLNEAQGDIKLLREKLAR 111 (319)
T ss_pred HHHHHHHHhchHHHHHHHHHh
Confidence 334444444444444444443
No 402
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=49.65 E-value=92 Score=30.30 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQ---TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 457 LeELE~KVq~Lq---tENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
..+||.-+..|+ ..+..|..-+++|..++......|..|...|+.|.++..
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~ 112 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWE 112 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 335556666666777777777777777777776665543
No 403
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=49.56 E-value=1.5e+02 Score=24.36 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
-..|+.-|+..+..++.+...+..++..++..+.....+-+.+
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~ 92 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888877777777666666555544
No 404
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=49.06 E-value=1.1e+02 Score=33.67 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 483 RDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
.....|...|++|..+++.|+.++.+..
T Consensus 297 ~rqk~le~~n~~L~~rieeLk~~~~~~~ 324 (411)
T KOG1318|consen 297 NRQKKLESTNQELALRIEELKSEAGRHG 324 (411)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3344455666666666666666655443
No 405
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=48.86 E-value=17 Score=40.42 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
||+.|++|+++|+.|..+|+.|+.+.|++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~ 60 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKH 60 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHh
Confidence 33333344444444444555555555544
No 406
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.75 E-value=1.1e+02 Score=35.74 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=7.8
Q ss_pred CCCCcccccCCC
Q 010222 108 PGPTHSRSLSQP 119 (514)
Q Consensus 108 ~~~~hsrslsqp 119 (514)
+|..|.+|.+--
T Consensus 204 ~g~v~~~S~sg~ 215 (771)
T TIGR01069 204 KGIVHDTSSSGE 215 (771)
T ss_pred CCeEEEEeCCCC
Confidence 566777776653
No 407
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=48.62 E-value=37 Score=31.01 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSV 486 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~ 486 (514)
++.++|+.||+-|+-+++.|..-++
T Consensus 79 kk~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 79 KKNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888887765333
No 408
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.53 E-value=1.8e+02 Score=35.67 Aligned_cols=42 Identities=24% Similarity=0.108 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
++|...+..+..+...+..++.-|..+...+..+..+++.+.
T Consensus 891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444444333
No 409
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=48.30 E-value=2.2e+02 Score=29.84 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
+-|+-|.+-+..=+..++||.+|-.+..--.+-|++++..|-+
T Consensus 44 as~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~ 86 (277)
T PF15030_consen 44 ASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQ 86 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHH
Confidence 4444455555555555555555544444444445555554433
No 410
>PRK10963 hypothetical protein; Provisional
Probab=48.14 E-value=67 Score=31.53 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+=.|.+++.|+.+|..|..++..|. ....+|..|-.++..+
T Consensus 40 SL~ErQ~~~LR~r~~~Le~~l~~Li----~~A~~Ne~l~~~~~~l 80 (223)
T PRK10963 40 SLVEWQMARQRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPL 80 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3456666666666666666665543 2344555555554444
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.03 E-value=2e+02 Score=33.51 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.+++++|..|+.+...-..++..++++...|......|..|++.
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555543
No 412
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=47.95 E-value=1.2e+02 Score=29.20 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
=+.|...|+.++..++.+...|...+.....++..+......+..+|+...
T Consensus 77 ~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~ 127 (158)
T PF09486_consen 77 LRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCR 127 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 356888888888888888888888777777766666666666666665444
No 413
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=47.95 E-value=1.1e+02 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.-.||..|..++..|+.-+ ...|...|-..++.|+.
T Consensus 49 ~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 49 FAMENIRLREELRRLQSFY--VEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHh
Confidence 3456666666666665433 33344444444444443
No 414
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.94 E-value=1.1e+02 Score=35.81 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=6.6
Q ss_pred CCCCcccccCC
Q 010222 108 PGPTHSRSLSQ 118 (514)
Q Consensus 108 ~~~~hsrslsq 118 (514)
+|..|-+|.+-
T Consensus 209 ~g~v~~~s~sg 219 (782)
T PRK00409 209 KGIVHDQSSSG 219 (782)
T ss_pred CCceeeEECCC
Confidence 45566666665
No 415
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=47.85 E-value=91 Score=30.63 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 484 DSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 484 e~~sL~tENkELK~RLQaLE 503 (514)
....+..+..+|+.+|+..+
T Consensus 154 ~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 154 KREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444444455555554443
No 416
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.42 E-value=2.1e+02 Score=34.91 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKMRYISEL---EHKVQTLQ-------TEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 437 KRiLkNRESAqRSReRKKqYLeEL---E~KVq~Lq-------tENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|++.+-|..|+..-+=|-+|..+| -.-|+.+. ....+|..++..++..+..|.++...||.++
T Consensus 283 rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666555555555554443 33332221 1122344444555555555555555555444
No 417
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=47.35 E-value=2.2e+02 Score=30.15 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=32.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 437 KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|..+.+..++-+++. ++|-.+|..+......|..+-..+..+...|..+-.++..+++.|.
T Consensus 29 R~El~~~~~~~~ekR------deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 29 RDELRKEASELAEKR------DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555443 3444555555555555555555555555555555555555555543
No 418
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.26 E-value=2.3e+02 Score=34.72 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=51.0
Q ss_pred hHHHhhhcchhHHhhhh-ccChHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 010222 413 GAELKKIMANEKLAEIA-LTDPKRAKR-ILANRQSAARSKERKMRYISELEHKVQ-------TLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 413 ~~E~KKim~~ekLaElA-l~DpKR~KR-iLkNRESAqRSReRKKqYLeELE~KVq-------~LqtENssLs~QLtlLQr 483 (514)
.+|+.|.+..+-..=.. ..|-|...- +..-++.+.+--..|...+.+|+..+. ++-.+++++.+++..++.
T Consensus 388 k~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~ 467 (1200)
T KOG0964|consen 388 KEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQD 467 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666554322111 112222222 234556666666666666666666554 555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 484 DSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 484 e~~sL~tENkELK~RLQaLEQ 504 (514)
....|-.|-+.|+..|..+++
T Consensus 468 ~Rk~lWREE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 468 KRKELWREEKKLRSLIANLEE 488 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677777665543
No 419
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=47.26 E-value=1.4e+02 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+..|+.||..|.+|-..=..+++.+=..++.|..+++.|+..|..||
T Consensus 16 v~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 16 VQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433334444444444444444444444444443
No 420
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=47.18 E-value=1e+02 Score=26.08 Aligned_cols=48 Identities=25% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTL-QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 457 LeELE~KVq~L-qtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|-.||.+++.+ ...+..+..++..|..++..|..|+.+++..|..++.
T Consensus 23 I~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 23 IYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555432 2333445555555555555566666666666655543
No 421
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=46.81 E-value=1.2e+02 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtl 480 (514)
+=|..|+.-.+|+++.+..|..-+.....|-.+.+.|+..
T Consensus 19 ~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~ 58 (214)
T PF07795_consen 19 ATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQK 58 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555544444443
No 422
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=46.75 E-value=1.8e+02 Score=34.08 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 481 LQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 481 LQre~~sL~tENkELK~RLQaLE 503 (514)
|-+++..|..||-.|+.++..|.
T Consensus 95 ll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 95 LLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 423
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=46.67 E-value=1.1e+02 Score=34.83 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLT---NQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~---tENkELK~RLQaLEQQaQ 507 (514)
|..|.-...+|...|. .||.-|+++|+.|+++-|
T Consensus 631 ll~Qfhm~~~Ems~llery~eNe~l~aelk~lreenq 667 (673)
T KOG4378|consen 631 LLLQFHMFMREMSRLLERYNENEMLKAELKFLREENQ 667 (673)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Confidence 4455555566777777 788888888887776544
No 424
>PF15556 Zwint: ZW10 interactor
Probab=46.64 E-value=2.7e+02 Score=28.61 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=43.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+.++++.+.|.-.+++.-.-|..++.|..-..+++.+.+..++++..|..|...|+.+.
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667777777777888877777777777777777777777777777654
No 425
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.59 E-value=1.7e+02 Score=30.89 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQ 468 (514)
Q Consensus 453 KKqYLeELE~KVq~Lq 468 (514)
-.+||-+||+.-..|+
T Consensus 110 l~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 110 LRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHhccHHH
Confidence 3445555555444443
No 426
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.58 E-value=2.8e+02 Score=30.27 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+.+|..-...+..+..+|..++..++++...|..+..+|+.+|..|..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666666667777777777777777777777777777777766653
No 427
>PLN02320 seryl-tRNA synthetase
Probab=46.57 E-value=1.6e+02 Score=33.01 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010222 480 LLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 480 lLQre~~sL~tENkELK~ 497 (514)
.|.++...|..+..++..
T Consensus 141 ~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 141 NLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 428
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=46.55 E-value=2.9e+02 Score=26.99 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
|+.+...+...+..|+.++..|..+..++
T Consensus 104 l~~~~~~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 104 LERELAAVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 429
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=46.31 E-value=2.3e+02 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=13.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHK--VQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 453 KKqYLeELE~K--Vq~LqtENssLs~QLtlL 481 (514)
+++|+..|+.. ...+......|..+|...
T Consensus 79 ~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~a 109 (139)
T PF13935_consen 79 AQQRIAELEQECENEDIALDVQKLRVELEAA 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666654 333333334444433333
No 430
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=46.26 E-value=2.5e+02 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~LqtENssLs~QLtlL 481 (514)
-.++-...+..|+.+|..|..++.....++..|
T Consensus 75 ~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 75 WEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556666666555555555544443
No 431
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.23 E-value=1.7e+02 Score=33.24 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=13.1
Q ss_pred cccCCCccccc--cCCCCCCCCCCCCCCCCC
Q 010222 114 RSLSQPSSFFS--LDSLPPLSPSPFRDSPST 142 (514)
Q Consensus 114 rslsqp~~ffs--~dslpplsp~p~~~~~~~ 142 (514)
+....=..||| ||.+ .++.-|+..+++
T Consensus 224 ~~~~k~a~f~~nnld~~--~~~~~y~~~~~~ 252 (518)
T PF10212_consen 224 NGTGKIAAFFSNNLDFF--TSSSGYGPKGAT 252 (518)
T ss_pred hhhHHHHHHHhcchHHh--hcccccCCCccc
Confidence 33334457885 5555 223355554443
No 432
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=46.15 E-value=28 Score=30.04 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 485 SVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 485 ~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+..|..||..||.+|+.|+...|
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
No 433
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.06 E-value=1.1e+02 Score=32.95 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 470 ENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
....|......|.++...|..+..+|+.+++.+
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444445555555555555555555544
No 434
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=46.01 E-value=1.6e+02 Score=27.12 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+|.++..++..|+........++..+++.+..|....-.|-.+++
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554444444433333333
No 435
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=45.85 E-value=3.2e+02 Score=27.30 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=47.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEH--------------KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~--------------KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|+.-+.+..--.|+.+|-||. |.+||. =+.-|+.|-..|..+++.=..+...+..|++.+..+|
T Consensus 94 k~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l 171 (192)
T PF09727_consen 94 KKMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQL 171 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555556555554 344443 3556888888898888888888888888888887777
Q ss_pred H-HHHHHHHh
Q 010222 500 Q-AMEQQAQL 508 (514)
Q Consensus 500 Q-aLEQQaQL 508 (514)
. .+.++.++
T Consensus 172 ~eE~~k~K~~ 181 (192)
T PF09727_consen 172 EEERTKLKSF 181 (192)
T ss_pred HHHHHHHHHH
Confidence 4 45555554
No 436
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=45.70 E-value=1.2e+02 Score=29.38 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGL-----TNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL-----~tENkELK~RLQaLEQQaQL 508 (514)
++-||.+.+.+......|...+..+..+.... ..|..++..+|+.||+...-
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777777777777777666554432 34777888888888876543
No 437
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.64 E-value=97 Score=27.88 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+.+++++|-.+++.|+.+...|..++.. |.....+++.-++.|+
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~-------l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEE-------LQASINELDTAKETLE 47 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444 4444444444444443
No 438
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=45.55 E-value=99 Score=27.15 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 487 GLTNQNNELKFRLQAM 502 (514)
Q Consensus 487 sL~tENkELK~RLQaL 502 (514)
.|..+...|+.++..+
T Consensus 85 ~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 85 TLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 439
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.53 E-value=1.9e+02 Score=33.57 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred hHHhhhhccChHHHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 423 EKLAEIALTDPKRAKRILANRQSAARSKE---------RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNN 493 (514)
Q Consensus 423 ekLaElAl~DpKR~KRiLkNRESAqRSRe---------RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENk 493 (514)
+.|.++-.....+.||-|++-.--+.-+. .=+..++.++..|..+..-...|..+++.-......|..+-.
T Consensus 37 ~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~ 116 (655)
T KOG3758|consen 37 RALSTFFEENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTE 116 (655)
T ss_pred HHHHHHHHhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 34444444455666666655432222111 112334445556666666666777777777777777888888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 010222 494 ELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 494 ELK~RLQaLEQQaQLrDA 511 (514)
.|+.+.+.+|...++.++
T Consensus 117 ~l~~e~~~le~r~kii~~ 134 (655)
T KOG3758|consen 117 TLKEEAAQLELRKKIINA 134 (655)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877665
No 440
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=45.34 E-value=1e+02 Score=34.89 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATT----LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENss----Ls~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|.+.|+....-+.++..+++.|+.|..+ ...||..|-..+..|..+...-+.+|+.|
T Consensus 453 aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 453 AEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555566666666655554 33455555555555544444444444444
No 441
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=45.11 E-value=1.1e+02 Score=26.46 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+..++..|...+..+..+|..|..+|+.+++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667777778888888888888877654
No 442
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=44.90 E-value=59 Score=35.45 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=8.8
Q ss_pred cccccchhhhhcc
Q 010222 355 RHYRSVSMDSFMG 367 (514)
Q Consensus 355 rH~RS~SmDs~~~ 367 (514)
.-..++-||-|.+
T Consensus 88 ~D~~W~D~dDFvE 100 (475)
T PF10359_consen 88 NDSSWIDMDDFVE 100 (475)
T ss_pred CCCCccCcccccc
Confidence 4567777777765
No 443
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.84 E-value=1.8e+02 Score=31.63 Aligned_cols=31 Identities=32% Similarity=0.253 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL~tENkE 494 (514)
.+.|+.+.++|..|+..|+.+++-|....+|
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333334444444444444444434333333
No 444
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.82 E-value=3.5e+02 Score=28.08 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 010222 493 NELKFRLQAME 503 (514)
Q Consensus 493 kELK~RLQaLE 503 (514)
+.++++|+.|+
T Consensus 96 k~~q~elEvl~ 106 (246)
T KOG4657|consen 96 KATQSELEVLR 106 (246)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 445
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=44.78 E-value=85 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
|..+...|..++..+......-..+...|..+.=.||.+|..+.+|
T Consensus 4 L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~q 49 (49)
T PF04325_consen 4 LFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLRQ 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333444444444433333333345566667777777777766543
No 446
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.58 E-value=97 Score=36.60 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
+|+.+.-||.+ +.|..|...++.++..++.+...|.+.+..|+.++..|+.+.+-..
T Consensus 208 lkermaAle~k-n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~ 264 (916)
T KOG0249|consen 208 LKERMAALEDK-NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKE 264 (916)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhh
No 447
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.53 E-value=2.2e+02 Score=34.95 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=3.5
Q ss_pred cccchhhh
Q 010222 357 YRSVSMDS 364 (514)
Q Consensus 357 ~RS~SmDs 364 (514)
+||+++|.
T Consensus 645 ~rsVTl~G 652 (1174)
T KOG0933|consen 645 TRSVTLEG 652 (1174)
T ss_pred cceeeecC
Confidence 34444444
No 448
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=44.52 E-value=89 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkE 494 (514)
.-|.+|-.+|...+.|+..|..+...|+.-+..|++....
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788888888999999999999999888888776543
No 449
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=44.32 E-value=2.9e+02 Score=27.35 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhc
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ--QAQLRDGI 512 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ--QaQLrDAL 512 (514)
++.|+.+++..+.+ +...|..++.....+..+-...=.++|.||. -..|++.|
T Consensus 152 ~eK~~~K~~ka~~~---Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l 206 (261)
T cd07648 152 IEKAEAKLKKAQDE---YKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFL 206 (261)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444433 4444444444444455555555566666664 33444443
No 450
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=44.29 E-value=3.3e+02 Score=27.01 Aligned_cols=67 Identities=27% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 436 AKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSA-----QLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 436 ~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~-----QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.-+-|.+++.......|+-+|..+.+.+.+.+......|.. +.+.|..-...+..|.++|+.+|+.-
T Consensus 8 ~~~eL~~~q~~eL~~l~~eq~~~e~e~ke~H~~e~~~kl~el~~e~Q~~QlK~LKe~~EkE~KElkK~L~~k 79 (185)
T PF08703_consen 8 RVRELKEKQEQELLKLREEQYESEKELKEEHLKEQFQKLEELARECQAAQLKKLKETCEKETKELKKKLDRK 79 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHH
Confidence 34456777777777777777777777777777776666543 33333444445567888888887654
No 451
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=44.22 E-value=2.7e+02 Score=25.96 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=46.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ---------RDSVGLTNQNNELKFRLQ-AMEQQAQL 508 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQ---------re~~sL~tENkELK~RLQ-aLEQQaQL 508 (514)
.|-|.+.|+--++|... +.++..+..+..-...+..++..+. .++..|..+-..++.+|+ .+..+.+.
T Consensus 38 ~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~i 115 (126)
T PF09403_consen 38 QLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQI 115 (126)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776666554 5777777777766666666666653 577788888877777775 45555554
Q ss_pred hh
Q 010222 509 RD 510 (514)
Q Consensus 509 rD 510 (514)
.+
T Consensus 116 I~ 117 (126)
T PF09403_consen 116 ID 117 (126)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 452
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.95 E-value=64 Score=34.95 Aligned_cols=12 Identities=25% Similarity=0.434 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQ 468 (514)
Q Consensus 457 LeELE~KVq~Lq 468 (514)
.++|..+|+.|+
T Consensus 48 N~~Lk~eVerLE 59 (420)
T PF07407_consen 48 NNDLKIEVERLE 59 (420)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 453
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=43.91 E-value=34 Score=31.71 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQa 501 (514)
++.|..+++.|..||+.||.+|..
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455667777788899999988853
No 454
>PHA03155 hypothetical protein; Provisional
Probab=43.87 E-value=29 Score=32.14 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RL 499 (514)
++.|..+++.|..||+.||.+|
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777888888877
No 455
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.79 E-value=2.1e+02 Score=29.19 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLT------LLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLt------lLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
.-=+..|++|..+|..++.|...|..+.. .-+.....|..-....+.-+..||.-..+-
T Consensus 125 ~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 125 DWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455788888888888888888876543 234455556666666666666666655443
No 456
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=43.72 E-value=87 Score=33.24 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.|..+|..++.....|..++..+.+....+..+...|..+|..|+...
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445555544555555555555555555566666666666666543
No 457
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=43.72 E-value=2.7e+02 Score=29.78 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=6.4
Q ss_pred hHHHHHHhcccc
Q 010222 264 VDDLFSAYMNLE 275 (514)
Q Consensus 264 ~ddlf~~Ymnl~ 275 (514)
++.+..+|++-.
T Consensus 140 ~n~l~~~yi~~~ 151 (498)
T TIGR03007 140 VQTLLTIFVEET 151 (498)
T ss_pred HHHHHHHHHHhh
Confidence 444555576543
No 458
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=43.69 E-value=3.3e+02 Score=33.47 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEAT-------TLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENs-------sLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+-+..+..-=+.+...++.++.++..|+.... .|..+...++.++..-..+...++..++
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ 507 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666777777777777776665 4555555554444333333333333333
No 459
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.68 E-value=1.2e+02 Score=27.45 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|..+++.+..+...|..+...|+.++..+
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 460
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.68 E-value=1.4e+02 Score=34.94 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Q 010222 442 NRQSAARSKERKMRY-----ISELEHKVQTLQTEATTLSAQLTL----------------------------LQRDSVGL 488 (514)
Q Consensus 442 NRESAqRSReRKKqY-----LeELE~KVq~LqtENssLs~QLtl----------------------------LQre~~sL 488 (514)
+|..---.++|+..- +++..++...|+.||..|+.+++. .......|
T Consensus 485 ~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~L 564 (716)
T KOG4593|consen 485 SSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEEL 564 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 489 TNQNNELKFRLQAME 503 (514)
Q Consensus 489 ~tENkELK~RLQaLE 503 (514)
.+|+..||.++++|+
T Consensus 565 qaE~~~lk~~l~~le 579 (716)
T KOG4593|consen 565 QAELERLKERLTALE 579 (716)
T ss_pred HHHHHHHHHHHHHHh
No 461
>PHA03161 hypothetical protein; Provisional
Probab=43.51 E-value=1.5e+02 Score=28.65 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQ 482 (514)
.+++.+|..|..+......++..|.
T Consensus 57 ~~i~~~v~~l~~~I~~k~kE~~~L~ 81 (150)
T PHA03161 57 KSIEGMLQAVDLSIQEKKKELSLLK 81 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555554443
No 462
>PRK14127 cell division protein GpsB; Provisional
Probab=43.50 E-value=64 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
.||+++-..++.|..|+..|..++..|+.++..+..+....
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57788888888888888887777777666555555544433
No 463
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=43.28 E-value=1.8e+02 Score=26.81 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQL-TLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QL-tlLQre~~sL~tENkELK~RLQaLE 503 (514)
..++...+..|..++......+ ..+-.+..........+.+||..||
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 5666666666666666555555 3333444445555555666666553
No 464
>PRK14160 heat shock protein GrpE; Provisional
Probab=43.25 E-value=1.3e+02 Score=30.18 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.|+.++..|+.++..|..++..++.++..+.++..-+|.|.
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555554444444
No 465
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.00 E-value=1.7e+02 Score=29.91 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhcC
Q 010222 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ--QAQLRDGII 513 (514)
Q Consensus 448 RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ--QaQLrDAL~ 513 (514)
|-|+-||.-.++|+..+..-..+...|..+++.++... ..-|++++..++..++ ++-|+++|.
T Consensus 153 K~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~v---e~f~~~~~~E~~~Fe~~K~~e~k~~l~ 217 (240)
T cd07667 153 KKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRV---ECFNADLKADMERWQNNKRQDFRQLLM 217 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.91 E-value=92 Score=31.46 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
|++.+++||.+-++|+.+-..=..+...|+. |..+..+++.++..|..|.
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~~----lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLEA----LRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHhC
No 467
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=42.91 E-value=2.2e+02 Score=28.19 Aligned_cols=68 Identities=16% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 437 KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
|+|+.| |..-|..=.+.-..|+..-..=+.+...=..++..|+.++..|.+...--..+|..||+..+
T Consensus 84 Rkmv~~---ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~ 151 (178)
T PF14073_consen 84 RKMVES---AEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQ 151 (178)
T ss_pred HHHHHH---HHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PRK14160 heat shock protein GrpE; Provisional
Probab=42.90 E-value=1.8e+02 Score=29.25 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
+..+..|+.++..|+.+...|..++..++.++..+......=+.++.....+.-+++.|
T Consensus 60 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LL 118 (211)
T PRK14160 60 KDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELL 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.86 E-value=2e+02 Score=33.56 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+-+-++-...-..+=-+.|++||.+...++.+..++......+++....|..+..+|+.+-+.+.++++
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~ 572 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=42.79 E-value=1.9e+02 Score=25.07 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSA-------------------------QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~-------------------------QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+....+|-..||+.|..|+.+...=.. ++..|-.+++.|..|...|..++..|..
T Consensus 3 k~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~ 82 (88)
T PF14389_consen 3 KQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYR 82 (88)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 010222 505 QA 506 (514)
Q Consensus 505 Qa 506 (514)
++
T Consensus 83 ~l 84 (88)
T PF14389_consen 83 QL 84 (88)
T ss_pred HH
No 471
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.71 E-value=2.9e+02 Score=29.32 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+..|..+.+..++-+++.+ +|-.+|..+......|..+-..+..+...|..+-.++..+++.|.+.+
T Consensus 26 ~ekR~El~~~~~~~~ekRd------eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 26 KEKRDELRKEASELAEKRD------ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=42.67 E-value=70 Score=28.22 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+.-++..+++++..|..||..|+.+.+..+.|.+
T Consensus 21 ~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvk 54 (87)
T PF10883_consen 21 LWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVK 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=42.62 E-value=3.4e+02 Score=30.14 Aligned_cols=95 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRY-ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqY-LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
.++..+-.....+......-+-....++.+..+.+..+.|... +.+|...++.+..|...........+.+...+..|.
T Consensus 323 ~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~ 402 (522)
T PF05701_consen 323 EELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEA 402 (522)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q 010222 493 NELKFRLQAMEQQAQL 508 (514)
Q Consensus 493 kELK~RLQaLEQQaQL 508 (514)
...+..+..++...+.
T Consensus 403 e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 403 EQTKAAIKTAEERLEA 418 (522)
T ss_pred HHHHHHHHHHHHHHHH
No 474
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=42.41 E-value=59 Score=34.68 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLT---NQNNELKFRL 499 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~---tENkELK~RL 499 (514)
..+..|.+||.+|++|+..|+.+...+. .||..|+..+
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 475
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=42.31 E-value=44 Score=30.50 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 475 SAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 475 s~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
...+..|++++..|+.||+-||.+++.|
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.25 E-value=2.8e+02 Score=31.92 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKMRY----ISELEHKVQTLQTEATTLSAQLTL----------LQRDSVGLTNQNNELKF 497 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKKqY----LeELE~KVq~LqtENssLs~QLtl----------LQre~~sL~tENkELK~ 497 (514)
|..|.+-.+.+=++-.+.+.+|... +++-|.+++.|+.++..|+.+|+. +..+...|..+...+..
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~ 353 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQS 353 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 010222 498 RLQAMEQQA 506 (514)
Q Consensus 498 RLQaLEQQa 506 (514)
++..|.+.+
T Consensus 354 ~~d~l~k~v 362 (581)
T KOG0995|consen 354 ELDRLSKEV 362 (581)
T ss_pred HHHHHHHHH
No 477
>PHA03162 hypothetical protein; Provisional
Probab=42.12 E-value=31 Score=32.69 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RL 499 (514)
++.|..+++.|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 478
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.00 E-value=1.4e+02 Score=28.54 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 443 RESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
.+.++.-+++=..-+.+|..++-.-+.|...|...-.-=++....|..|...|+.+|..++-+..++
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~ 115 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIA 115 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=41.84 E-value=2.3e+02 Score=32.76 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010222 443 RQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 443 RESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDA 511 (514)
|+.+.+-|..=++-|+.|..++..|..+...+..++..-+........+-.+++.+---|+...+-++.
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~ 142 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEE 142 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=41.50 E-value=1.7e+02 Score=24.04 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
++.+..+|.++..++.....|....+.++.+...+.....+|+..+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=41.48 E-value=84 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
++||+.++..|+.|+..+...+..-+.......+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=41.45 E-value=2.2e+02 Score=33.69 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh
Q 010222 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL--------------TNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 444 ESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL--------------~tENkELK~RLQaLEQQaQLr 509 (514)
..+..-=+-.+..|.++|.++..|+.+...+..-...++.++..+ .+|+.+|..++..|+.+.+-.
T Consensus 613 ~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 613 ASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcC
Q 010222 510 DGII 513 (514)
Q Consensus 510 DAL~ 513 (514)
-+++
T Consensus 693 r~~~ 696 (769)
T PF05911_consen 693 RALS 696 (769)
T ss_pred Hhcc
No 483
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.44 E-value=3.5e+02 Score=32.97 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 010222 415 ELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS-VGLTNQNN 493 (514)
Q Consensus 415 E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~-~sL~tENk 493 (514)
+.-+..-.....++...+.+..+.....+.-..+..+-|.+....++.++..|+.+...+..++..+..++ ..+.....
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~ 717 (1201)
T PF12128_consen 638 EELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRN 717 (1201)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh
Q 010222 494 ELKFRLQAMEQQAQLR 509 (514)
Q Consensus 494 ELK~RLQaLEQQaQLr 509 (514)
+++.+.+.++......
T Consensus 718 e~~~~~~~~~~~~d~~ 733 (1201)
T PF12128_consen 718 ELKAQWQELEAELDEQ 733 (1201)
T ss_pred HHHHHHHHHHHHHHHH
No 484
>PRK12705 hypothetical protein; Provisional
Probab=41.39 E-value=3.4e+02 Score=30.56 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred hHHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 413 GAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 413 ~~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
..+.+|..--+.-.++...-.+..+++-.-|.-.++--.|-.+.-+.|+.+.+.|+.....|..+-..|..+...|....
T Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~ 125 (508)
T PRK12705 46 AEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELE 125 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 010222 493 NELKFRLQAM 502 (514)
Q Consensus 493 kELK~RLQaL 502 (514)
.++..+|+.+
T Consensus 126 ~~~~~~Le~i 135 (508)
T PRK12705 126 KQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHH
No 485
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=41.30 E-value=1.3e+02 Score=35.55 Aligned_cols=66 Identities=17% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGII 513 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL~ 513 (514)
|..-|+--++..+.|++++..+.+...++...-..|..+...|..|...|+ + +.++++..|+|-+.
T Consensus 207 hlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~-~-~~~~~~~~mrd~~~ 272 (916)
T KOG0249|consen 207 HLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR-R-SSLEKEQELRDHLR 272 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-H-HHHhhhhhhcchhh
No 486
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.27 E-value=26 Score=39.05 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 446 AARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSV 486 (514)
Q Consensus 446 AqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~ 486 (514)
|.-...-+++.|++|++|+++|+++...|..++...+++..
T Consensus 22 a~~~~~~~~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~s~ 62 (489)
T PF11853_consen 22 AMADDIDLLQKIEALKKQLEELKAQQDDLNDRVDKVEKHSA 62 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccccccchhhHhhh
No 487
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=41.25 E-value=1.3e+02 Score=33.46 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+|++-|-..+++.......+...+..++++...+..+..+|.-+|..|-++..
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr 484 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTR 484 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
No 488
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=41.17 E-value=1.5e+02 Score=32.21 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
|.-|+|+|.++..--.|+..+..+++.+..-+..|.....+||+.|..-++-.+
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdelie 206 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIE 206 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=41.07 E-value=56 Score=28.30 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
+..+++++..|..|...|+.+|+.+...-|++..+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~di 36 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIKEDI 36 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
No 490
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=41.02 E-value=65 Score=37.34 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
++.-..++.+|++||+|.-.-..+. |+++..|+.||++|+ ++--+...+.++
T Consensus 225 ~K~~vs~~e~i~~LQeE~l~tQ~kY---QreLErlEKENkeLr-~lll~kd~k~i~ 276 (980)
T KOG0447|consen 225 QKRKVSDKEKIDQLQEELLHTQLKY---QRILERLEKENKELR-KLVLQKDDKGIH 276 (980)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHH-HHHhhccchhhH
No 491
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.02 E-value=3.9e+02 Score=26.92 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HH
Q 010222 433 PKRAKRILANRQSAARSKERK--MRYISELEHKVQTLQTEATTLSAQLTLLQ--------------------------RD 484 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRK--KqYLeELE~KVq~LqtENssLs~QLtlLQ--------------------------re 484 (514)
.+++.++...+..+.....-+ ...+..++.++..|+.++..+..++..++ ++
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~ 190 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQ 190 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 485 SVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 485 ~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+.+..+...|+.+++....+..
T Consensus 191 ~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 191 LDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
No 492
>PRK04654 sec-independent translocase; Provisional
Probab=41.00 E-value=2.6e+02 Score=28.54 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=0.0
Q ss_pred hcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 419 IMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 419 im~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
++.+++|.+++ ..--|.-|.+++=....+.-..+.-.++||.+.++.++.+...+..++...+++...-....+.+..+
T Consensus 19 V~GPerLPe~a-RtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~~~ 97 (214)
T PRK04654 19 VLGPERLPKAA-RFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDVSR 97 (214)
T ss_pred hcCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
No 493
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=40.99 E-value=1.5e+02 Score=29.05 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATT-------------------------------LSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENss-------------------------------Ls~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+++|.++++.-.+.=...+.. |..++..|+.++..|..++..|+.+...
T Consensus 57 rk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 57 RKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 010222 502 MEQQ 505 (514)
Q Consensus 502 LEQQ 505 (514)
++..
T Consensus 137 ~~eD 140 (170)
T PRK13923 137 TEED 140 (170)
T ss_pred HHHH
No 494
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=40.97 E-value=3.4e+02 Score=32.88 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred chHHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHH
Q 010222 412 SGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQ--------------------TEA 471 (514)
Q Consensus 412 s~~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~Lq--------------------tEN 471 (514)
+.+++.+-..-.+++..+ +.||+.--++-|+.-+.-+++++....+|+.++.+++ .--
T Consensus 588 e~Eea~~q~~e~~~~r~a--E~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d 665 (988)
T KOG2072|consen 588 EAEEAQEQAKEQRQAREA--EEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDAD 665 (988)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDA 511 (514)
.-+..+++.|+.+...|....+.+..+|.-+|....+-++
T Consensus 666 ~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~R~Eei 705 (988)
T KOG2072|consen 666 QIKARQIEELEKERKELQSRLQYQEKKIDHLERAKRLEEI 705 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
No 495
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.92 E-value=2.7e+02 Score=34.48 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQ--------RDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQ--------re~~sL~tENkELK~RLQaLEQQ 505 (514)
.+...+...-..++.-.++.++-+.+++.++..|+.+...|..++..|+ +++..|..+.+++...+...+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~ 355 (1353)
T TIGR02680 276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQA 355 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhh
Q 010222 506 AQLRDG 511 (514)
Q Consensus 506 aQLrDA 511 (514)
+.-+..
T Consensus 356 ~~~a~~ 361 (1353)
T TIGR02680 356 IREAES 361 (1353)
T ss_pred HHHHHH
No 496
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=40.79 E-value=84 Score=30.62 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|.+-++|+.|..++..+|..|.+-+......-.+||.+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 497
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=40.76 E-value=55 Score=31.75 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
+...+++...|..+|++|+.+|+.|-..++=.+++
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~ 76 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIENARENEAI 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=40.72 E-value=1.2e+02 Score=34.50 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
+.+.++-.++..++.|...+..++..++.++..|+++...|++++..+.-+...++++
T Consensus 205 KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 205 KELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 499
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=40.72 E-value=3e+02 Score=30.33 Aligned_cols=67 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSA------------QLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~------------QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.||..--+++.+=....+.|..+|..||.-...|+. +++.+..++..+..+..+|+..|..+...++
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~Wk 277 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWK 277 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
No 500
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=40.67 E-value=88 Score=28.31 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATT-LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENss-Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
|..||.+|...|..||.+++. |-++++.-+........+.. .+..|.+
T Consensus 52 K~t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~~~~~~~-----~e~~eee 100 (103)
T PF08738_consen 52 KDTYLSELRAQLTTLQDDINEFLTERMEEDKARDAQAGEEKS-----DEAKEEE 100 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhh-----HHHHHHH
Done!