Query 010222
Match_columns 514
No_of_seqs 185 out of 798
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 22:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 5.4E-14 1.8E-18 109.1 6.6 52 434-485 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.5E-11 5E-16 97.2 10.2 58 433-490 1-58 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 1.4E-11 4.9E-16 96.3 9.4 56 434-489 1-56 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.2 6.4E-11 2.2E-15 93.0 7.8 55 434-488 1-55 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 3.7E-10 1.3E-14 89.8 6.8 49 437-485 12-60 (63)
6 1gd2_E Transcription factor PA 99.0 6.9E-10 2.4E-14 90.3 7.5 66 431-496 5-70 (70)
7 1ci6_A Transcription factor AT 98.9 2.2E-09 7.5E-14 85.0 7.9 57 434-490 2-58 (63)
8 1hjb_A Ccaat/enhancer binding 98.5 5.9E-07 2E-11 75.8 10.0 65 430-494 11-75 (87)
9 1gu4_A CAAT/enhancer binding p 98.5 6.2E-07 2.1E-11 74.3 9.9 60 430-489 11-70 (78)
10 3a5t_A Transcription factor MA 98.3 1.9E-08 6.6E-13 87.7 -4.5 68 430-504 33-100 (107)
11 2wt7_B Transcription factor MA 98.2 4.2E-06 1.4E-10 71.2 9.2 66 430-502 23-88 (90)
12 2oqq_A Transcription factor HY 97.5 0.00018 6.3E-09 53.8 5.4 36 454-489 2-37 (42)
13 1skn_P DNA-binding domain of S 96.7 0.00036 1.2E-08 59.7 1.1 49 414-462 42-90 (92)
14 2w6a_A ARF GTPase-activating p 94.8 0.097 3.3E-06 42.0 7.4 41 457-497 22-62 (63)
15 2jee_A YIIU; FTSZ, septum, coi 94.7 0.15 5.3E-06 42.7 8.7 39 456-494 7-45 (81)
16 3hnw_A Uncharacterized protein 94.7 0.17 5.7E-06 45.5 9.6 54 452-505 72-125 (138)
17 2jee_A YIIU; FTSZ, septum, coi 93.2 0.44 1.5E-05 40.0 8.7 48 456-503 21-68 (81)
18 3efg_A Protein SLYX homolog; x 92.8 0.24 8.2E-06 40.8 6.5 51 455-505 14-64 (78)
19 3oja_B Anopheles plasmodium-re 92.4 0.89 3E-05 46.7 11.5 34 469-502 544-577 (597)
20 3hnw_A Uncharacterized protein 92.3 1.1 3.7E-05 40.3 10.5 59 448-506 75-133 (138)
21 3s9g_A Protein hexim1; cyclin 91.5 0.76 2.6E-05 40.1 8.3 47 458-504 40-93 (104)
22 1deb_A APC protein, adenomatou 91.3 1.1 3.7E-05 35.1 8.1 46 457-502 5-50 (54)
23 2dfs_A Myosin-5A; myosin-V, in 90.4 2.1 7.3E-05 49.0 13.1 53 451-503 987-1043(1080)
24 3he5_A Synzip1; heterodimeric 90.4 0.93 3.2E-05 34.3 6.8 45 456-500 4-48 (49)
25 3swy_A Cyclic nucleotide-gated 90.4 1.1 3.7E-05 34.1 7.2 44 459-505 2-45 (46)
26 3cve_A Homer protein homolog 1 90.0 1.7 5.8E-05 35.7 8.6 45 459-503 4-48 (72)
27 3m48_A General control protein 89.7 0.34 1.2E-05 34.8 3.7 27 457-483 2-28 (33)
28 2oxj_A Hybrid alpha/beta pepti 89.6 0.4 1.4E-05 34.6 4.1 28 456-483 2-29 (34)
29 3oja_A Leucine-rich immune mol 89.2 5.5 0.00019 40.2 13.7 31 452-482 432-462 (487)
30 1kd8_B GABH BLL, GCN4 acid bas 89.1 0.61 2.1E-05 34.0 4.8 29 456-484 2-30 (36)
31 1go4_E MAD1 (mitotic arrest de 89.1 0.66 2.2E-05 40.2 5.9 21 483-503 75-95 (100)
32 2kz5_A Transcription factor NF 89.0 0.021 7.3E-07 48.8 -3.3 43 414-456 46-88 (91)
33 3cvf_A Homer-3, homer protein 89.0 1 3.5E-05 37.5 6.8 46 458-503 9-54 (79)
34 3a7p_A Autophagy protein 16; c 88.5 6.8 0.00023 36.2 12.5 44 457-500 91-134 (152)
35 3swf_A CGMP-gated cation chann 88.2 1.5 5E-05 36.4 7.1 47 458-507 3-49 (74)
36 1kd8_A GABH AIV, GCN4 acid bas 88.2 0.55 1.9E-05 34.3 4.0 30 456-485 2-31 (36)
37 2ve7_C Kinetochore protein NUF 88.2 0.57 1.9E-05 45.5 5.4 62 425-486 111-179 (250)
38 2oqq_A Transcription factor HY 88.1 1.5 5.1E-05 33.0 6.4 34 465-498 6-39 (42)
39 3c3f_A Alpha/beta peptide with 87.7 0.65 2.2E-05 33.5 4.1 28 456-483 2-29 (34)
40 2v66_B Nuclear distribution pr 87.3 2.8 9.6E-05 36.9 8.8 46 457-502 37-82 (111)
41 3u1c_A Tropomyosin alpha-1 cha 87.2 11 0.00039 31.8 12.3 19 455-473 44-62 (101)
42 1nkp_B MAX protein, MYC proto- 87.0 0.71 2.4E-05 37.4 4.6 29 454-482 46-74 (83)
43 3mq7_A Bone marrow stromal ant 86.7 3 0.0001 37.3 8.6 39 462-500 71-109 (121)
44 1wlq_A Geminin; coiled-coil; 2 86.6 4.4 0.00015 34.3 9.1 47 467-513 36-82 (83)
45 2wt7_B Transcription factor MA 86.4 1.3 4.5E-05 37.7 6.0 57 447-506 29-85 (90)
46 3m91_A Proteasome-associated A 86.1 1.9 6.6E-05 33.2 6.3 40 463-502 10-49 (51)
47 3c3g_A Alpha/beta peptide with 85.9 1.2 4.2E-05 31.9 4.7 27 457-483 2-28 (33)
48 2hy6_A General control protein 85.3 0.95 3.2E-05 32.7 3.9 28 456-483 2-29 (34)
49 3mq9_A Bone marrow stromal ant 85.1 6 0.00021 39.7 11.2 21 483-503 443-463 (471)
50 3a7o_A Autophagy protein 16; c 85.0 3.1 0.00011 34.5 7.3 44 461-504 31-74 (75)
51 2bni_A General control protein 84.9 1 3.5E-05 32.5 3.9 28 456-483 2-29 (34)
52 2wq1_A General control protein 84.6 1.5 5.2E-05 31.4 4.7 27 457-483 2-28 (33)
53 1t6f_A Geminin; coiled-coil, c 84.1 1.5 5.1E-05 32.1 4.5 30 468-497 6-35 (37)
54 1uo4_A General control protein 84.0 1.2 4E-05 32.2 3.9 28 456-483 2-29 (34)
55 2v71_A Nuclear distribution pr 84.0 4.1 0.00014 38.6 8.8 43 457-499 90-132 (189)
56 3q8t_A Beclin-1; autophagy, AT 83.6 5.2 0.00018 33.8 8.5 47 454-500 38-84 (96)
57 1nlw_A MAD protein, MAX dimeri 83.4 2 6.7E-05 35.3 5.6 32 454-485 46-77 (80)
58 2xdj_A Uncharacterized protein 83.3 7.4 0.00025 32.4 9.1 46 455-500 20-65 (83)
59 4ati_A MITF, microphthalmia-as 83.0 3 0.0001 36.3 7.0 25 484-508 92-116 (118)
60 4ath_A MITF, microphthalmia-as 83.0 4.1 0.00014 34.3 7.5 44 454-508 38-81 (83)
61 3bas_A Myosin heavy chain, str 82.9 19 0.00065 29.8 12.6 52 455-506 35-86 (89)
62 3ghg_A Fibrinogen alpha chain; 82.7 3.9 0.00013 44.2 9.0 53 447-499 102-154 (562)
63 4h22_A Leucine-rich repeat fli 82.7 7.1 0.00024 34.1 9.0 79 431-512 7-87 (103)
64 2zxx_A Geminin; coiled-coil, c 82.4 3.7 0.00013 34.3 6.9 45 468-512 33-77 (79)
65 2yy0_A C-MYC-binding protein; 82.0 2.5 8.5E-05 32.6 5.3 31 463-500 20-50 (53)
66 1wle_A Seryl-tRNA synthetase; 81.9 8.4 0.00029 40.8 11.2 47 459-505 81-138 (501)
67 3m0d_C TNF receptor-associated 81.7 14 0.00049 29.0 9.8 53 453-505 4-56 (65)
68 2lw1_A ABC transporter ATP-bin 81.5 6.3 0.00022 32.3 8.0 53 455-507 22-80 (89)
69 2v4h_A NF-kappa-B essential mo 81.4 21 0.0007 31.6 11.6 64 444-507 34-107 (110)
70 3qh9_A Liprin-beta-2; coiled-c 81.4 7.1 0.00024 32.9 8.2 54 458-511 15-68 (81)
71 3m9b_A Proteasome-associated A 81.2 2 6.7E-05 42.5 5.7 41 456-496 55-95 (251)
72 2wt7_A Proto-oncogene protein 80.9 14 0.00049 28.7 9.5 27 478-504 25-51 (63)
73 3o0z_A RHO-associated protein 80.9 21 0.00071 33.5 12.1 57 439-495 74-130 (168)
74 3a7p_A Autophagy protein 16; c 80.3 8 0.00027 35.8 9.0 45 460-504 80-124 (152)
75 3vmx_A Voltage-gated hydrogen 80.2 6.7 0.00023 30.2 7.1 39 461-499 3-41 (48)
76 2xdj_A Uncharacterized protein 80.2 19 0.00064 30.0 10.4 33 471-503 22-54 (83)
77 3vkg_A Dynein heavy chain, cyt 79.6 6.3 0.00021 50.3 10.6 42 466-507 2032-2073(3245)
78 2yy0_A C-MYC-binding protein; 79.6 2.2 7.5E-05 32.9 4.3 26 478-503 21-46 (53)
79 2c9l_Y EB1, zebra, BZLF1 trans 79.4 8.7 0.0003 30.6 7.7 36 439-474 6-41 (63)
80 1jnm_A Proto-oncogene C-JUN; B 79.4 2.1 7.2E-05 33.2 4.2 27 478-504 24-50 (62)
81 1nkp_A C-MYC, MYC proto-oncoge 79.3 4.7 0.00016 33.4 6.6 35 454-502 51-85 (88)
82 2dfs_A Myosin-5A; myosin-V, in 79.3 11 0.00038 43.3 11.8 27 457-483 1018-1044(1080)
83 1i84_S Smooth muscle myosin he 78.6 13 0.00043 42.7 12.0 20 2-21 175-194 (1184)
84 2v71_A Nuclear distribution pr 78.5 9.9 0.00034 36.1 9.3 27 478-504 90-116 (189)
85 3na7_A HP0958; flagellar bioge 78.4 14 0.00048 35.1 10.5 50 455-504 32-81 (256)
86 3m9b_A Proteasome-associated A 78.4 1.9 6.5E-05 42.6 4.6 44 461-504 53-96 (251)
87 3efg_A Protein SLYX homolog; x 78.2 6.2 0.00021 32.4 6.9 49 458-506 10-58 (78)
88 3a2a_A Voltage-gated hydrogen 78.0 5.5 0.00019 31.6 6.1 39 461-499 10-48 (58)
89 1ci6_A Transcription factor AT 77.7 10 0.00034 29.7 7.7 22 482-503 29-50 (63)
90 3u1c_A Tropomyosin alpha-1 cha 77.6 31 0.0011 29.1 12.9 36 460-495 35-70 (101)
91 1a93_B MAX protein, coiled coi 77.6 3.1 0.00011 30.1 4.2 30 474-503 5-34 (34)
92 3i00_A HIP-I, huntingtin-inter 77.2 9.6 0.00033 33.6 8.3 48 448-495 33-80 (120)
93 1deq_A Fibrinogen (alpha chain 76.9 11 0.00036 39.4 9.7 66 434-499 91-157 (390)
94 2fxo_A Myosin heavy chain, car 76.7 16 0.00054 31.9 9.5 45 459-503 80-124 (129)
95 3k29_A Putative uncharacterize 76.6 48 0.0016 31.2 13.1 85 414-500 19-123 (169)
96 1fmh_A General control protein 76.6 4 0.00014 28.8 4.5 28 457-484 3-30 (33)
97 1gu4_A CAAT/enhancer binding p 76.4 22 0.00075 29.3 9.7 22 483-504 43-64 (78)
98 2eqb_B RAB guanine nucleotide 76.3 16 0.00054 31.6 9.1 42 459-500 44-93 (97)
99 4emc_A Monopolin complex subun 76.2 5.7 0.0002 37.9 7.0 45 455-499 13-57 (190)
100 1am9_A Srebp-1A, protein (ster 76.2 11 0.00039 30.6 7.9 62 440-501 8-75 (82)
101 2r2v_A GCN4 leucine zipper; co 75.7 3.5 0.00012 29.8 4.1 28 456-483 2-29 (34)
102 4emc_A Monopolin complex subun 75.5 4.6 0.00016 38.5 6.2 44 457-500 22-65 (190)
103 3htk_A Structural maintenance 75.3 24 0.00081 26.5 9.3 48 458-505 8-55 (60)
104 3m91_A Proteasome-associated A 75.3 11 0.00037 29.1 7.1 39 457-495 11-49 (51)
105 4h22_A Leucine-rich repeat fli 75.2 12 0.00041 32.7 8.1 48 454-501 36-83 (103)
106 3plt_A Sphingolipid long chain 75.1 5.4 0.00019 39.0 6.7 59 439-502 98-157 (234)
107 1am9_A Srebp-1A, protein (ster 75.1 4.1 0.00014 33.2 5.0 31 452-482 47-77 (82)
108 1ic2_A Tropomyosin alpha chain 74.9 32 0.0011 27.8 10.7 52 451-502 16-67 (81)
109 1jcd_A Major outer membrane li 74.9 15 0.00051 28.5 7.8 44 456-499 5-48 (52)
110 1hjb_A Ccaat/enhancer binding 74.9 20 0.00069 30.1 9.2 28 457-484 45-72 (87)
111 4etp_A Kinesin-like protein KA 73.9 11 0.00036 38.7 8.8 47 456-502 11-57 (403)
112 3s4r_A Vimentin; alpha-helix, 73.8 17 0.00059 30.5 8.6 25 478-502 58-82 (93)
113 3htk_A Structural maintenance 73.4 18 0.00062 27.2 7.9 52 450-501 7-58 (60)
114 2wvr_A Geminin; DNA replicatio 73.2 15 0.00052 35.5 9.1 40 469-508 115-154 (209)
115 3s9g_A Protein hexim1; cyclin 72.5 19 0.00066 31.4 8.7 30 454-483 64-93 (104)
116 3u59_A Tropomyosin beta chain; 72.1 42 0.0015 28.0 12.7 28 453-480 42-69 (101)
117 2v66_B Nuclear distribution pr 71.3 44 0.0015 29.4 10.8 28 477-504 36-63 (111)
118 1gd2_E Transcription factor PA 71.0 20 0.00068 29.1 8.0 32 474-505 34-65 (70)
119 2dgc_A Protein (GCN4); basic d 70.8 5.4 0.00019 31.4 4.6 30 477-506 31-60 (63)
120 1ytz_T Troponin T; muscle, THI 70.2 17 0.00058 31.6 7.9 62 443-504 16-84 (107)
121 3nmd_A CGMP dependent protein 70.1 17 0.00057 30.0 7.4 24 455-478 40-63 (72)
122 1joc_A EEA1, early endosomal a 69.2 25 0.00085 30.6 8.9 45 455-499 11-55 (125)
123 3q8t_A Beclin-1; autophagy, AT 69.0 51 0.0017 27.7 12.0 69 435-503 26-94 (96)
124 3mq7_A Bone marrow stromal ant 68.7 28 0.00094 31.2 9.1 47 457-503 59-105 (121)
125 1ses_A Seryl-tRNA synthetase; 68.5 47 0.0016 34.1 12.2 43 462-504 42-85 (421)
126 3m0a_A TNF receptor-associated 68.3 38 0.0013 26.0 9.4 57 456-512 6-63 (66)
127 3oja_A Leucine-rich immune mol 68.3 29 0.00099 34.9 10.5 32 468-499 427-458 (487)
128 2wuj_A Septum site-determining 68.2 4.8 0.00017 31.0 3.7 28 455-482 27-54 (57)
129 1zme_C Proline utilization tra 68.1 4.4 0.00015 30.7 3.4 25 454-478 43-67 (70)
130 2p22_C Protein SRN2; endosome, 67.9 71 0.0024 30.0 12.3 85 400-489 27-113 (192)
131 3tnu_B Keratin, type II cytosk 67.9 31 0.0011 29.9 9.3 15 460-474 48-62 (129)
132 2xv5_A Lamin-A/C; structural p 67.9 27 0.00093 28.4 8.3 53 448-500 5-57 (74)
133 3q0x_A Centriole protein; cent 67.7 21 0.0007 34.7 8.8 62 430-497 159-220 (228)
134 1uii_A Geminin; human, DNA rep 67.3 31 0.0011 29.1 8.6 33 468-500 45-77 (83)
135 1lwu_C Fibrinogen gamma chain; 67.1 15 0.00052 37.1 8.1 23 460-482 17-39 (323)
136 2dq0_A Seryl-tRNA synthetase; 67.0 51 0.0017 34.3 12.2 46 460-505 43-91 (455)
137 3u59_A Tropomyosin beta chain; 65.8 58 0.002 27.2 12.9 43 454-496 22-64 (101)
138 1dip_A Delta-sleep-inducing pe 65.6 6 0.00021 33.0 4.0 26 472-497 18-43 (78)
139 1dh3_A Transcription factor CR 65.4 7.6 0.00026 29.8 4.3 28 477-504 23-50 (55)
140 4etp_A Kinesin-like protein KA 65.3 16 0.00055 37.4 8.0 26 458-483 6-31 (403)
141 1nkp_B MAX protein, MYC proto- 65.3 11 0.00037 30.4 5.4 28 474-501 52-79 (83)
142 3trt_A Vimentin; cytoskeleton, 65.1 49 0.0017 26.0 9.4 33 459-491 39-71 (77)
143 1j1d_B Troponin T, TNT; THIN f 65.1 52 0.0018 28.6 10.0 28 465-492 45-72 (106)
144 3qne_A Seryl-tRNA synthetase, 65.0 26 0.00088 37.2 9.7 46 460-505 45-93 (485)
145 3cve_A Homer protein homolog 1 64.8 50 0.0017 27.1 9.2 46 457-502 23-68 (72)
146 1s1c_X RHO-associated, coiled- 64.7 40 0.0014 27.7 8.6 32 459-490 3-34 (71)
147 1gmj_A ATPase inhibitor; coile 64.4 51 0.0018 27.8 9.5 12 491-502 66-77 (84)
148 3ol1_A Vimentin; structural ge 64.3 39 0.0013 29.2 9.1 35 472-506 65-99 (119)
149 3cvf_A Homer-3, homer protein 64.2 62 0.0021 26.9 10.2 47 456-502 28-74 (79)
150 2zqm_A Prefoldin beta subunit 63.9 24 0.0008 29.2 7.4 20 482-501 90-109 (117)
151 2oa5_A Hypothetical protein BQ 63.7 3.7 0.00013 36.3 2.5 24 456-479 9-32 (110)
152 1ic2_A Tropomyosin alpha chain 63.4 57 0.002 26.3 12.1 49 454-502 26-74 (81)
153 2zvf_A Alanyl-tRNA synthetase; 63.4 18 0.00061 31.8 7.0 29 473-501 29-57 (171)
154 4b4t_K 26S protease regulatory 62.9 12 0.0004 38.8 6.5 46 457-502 44-89 (428)
155 1uix_A RHO-associated kinase; 62.8 39 0.0013 27.7 8.2 32 460-491 2-33 (71)
156 3i00_A HIP-I, huntingtin-inter 62.7 32 0.0011 30.3 8.3 51 454-504 32-82 (120)
157 1nkp_A C-MYC, MYC proto-oncoge 62.6 20 0.0007 29.6 6.7 29 478-506 54-82 (88)
158 1m1j_A Fibrinogen alpha subuni 62.2 60 0.002 34.8 11.6 66 434-499 89-155 (491)
159 2w83_C C-JUN-amino-terminal ki 62.1 13 0.00043 31.2 5.3 21 483-503 37-57 (77)
160 1dip_A Delta-sleep-inducing pe 62.1 6 0.00021 33.0 3.4 23 454-476 21-43 (78)
161 1nlw_A MAD protein, MAX dimeri 62.1 15 0.00052 29.9 5.8 29 473-501 51-79 (80)
162 4dzn_A Coiled-coil peptide CC- 62.0 15 0.00051 25.9 4.8 27 478-504 4-30 (33)
163 1wt6_A Myotonin-protein kinase 61.3 74 0.0025 26.8 10.4 58 442-502 14-71 (81)
164 2w83_C C-JUN-amino-terminal ki 60.8 53 0.0018 27.4 8.7 29 474-502 35-63 (77)
165 2oto_A M protein; helical coil 60.6 39 0.0013 30.0 8.7 31 458-488 53-83 (155)
166 3iv1_A Tumor susceptibility ge 59.4 77 0.0026 26.4 10.8 52 453-504 23-74 (78)
167 3he5_B Synzip2; heterodimeric 59.4 28 0.00095 26.6 6.3 12 464-475 12-23 (52)
168 1g6u_A Domain swapped dimer; d 59.2 35 0.0012 25.7 6.7 26 477-502 21-46 (48)
169 1jcd_A Major outer membrane li 59.1 48 0.0017 25.6 7.7 38 462-499 4-41 (52)
170 3bas_A Myosin heavy chain, str 58.1 77 0.0026 26.1 9.5 41 459-499 46-86 (89)
171 1ik9_A DNA repair protein XRCC 58.0 26 0.00087 33.4 7.4 27 456-482 140-166 (213)
172 2er8_A Regulatory protein Leu3 57.8 5.3 0.00018 30.5 2.3 22 454-475 48-69 (72)
173 2j5u_A MREC protein; bacterial 57.8 4.9 0.00017 38.7 2.5 32 468-499 25-59 (255)
174 3nmd_A CGMP dependent protein 57.3 23 0.0008 29.1 6.0 29 457-485 35-63 (72)
175 2ve7_A Kinetochore protein HEC 57.3 14 0.00047 36.7 5.7 32 461-492 184-215 (315)
176 2wuj_A Septum site-determining 56.7 9.1 0.00031 29.5 3.4 26 480-505 31-56 (57)
177 3bbp_D GRIP and coiled-coil do 56.3 10 0.00035 31.3 3.7 47 458-504 18-64 (71)
178 1m1j_B Fibrinogen beta chain; 55.8 1.2E+02 0.0043 32.1 12.8 53 455-507 135-192 (464)
179 2no2_A HIP-I, huntingtin-inter 55.6 1E+02 0.0034 26.6 10.5 27 478-504 70-96 (107)
180 3gp4_A Transcriptional regulat 55.4 1.1E+02 0.0036 26.8 11.2 34 409-443 39-72 (142)
181 2dq0_A Seryl-tRNA synthetase; 55.2 53 0.0018 34.2 9.8 51 454-504 44-97 (455)
182 2v4h_A NF-kappa-B essential mo 54.8 80 0.0027 27.9 9.4 52 451-502 58-109 (110)
183 1lwu_C Fibrinogen gamma chain; 54.8 29 0.001 35.1 7.6 37 467-503 17-53 (323)
184 1fxk_A Prefoldin; archaeal pro 54.5 30 0.001 28.2 6.4 28 475-502 71-98 (107)
185 3uux_B Mitochondrial division 54.4 29 0.00099 34.2 7.2 49 456-504 178-226 (242)
186 1lrz_A FEMA, factor essential 54.4 22 0.00075 35.7 6.7 24 455-478 247-270 (426)
187 3ghg_A Fibrinogen alpha chain; 53.9 57 0.002 35.5 9.9 32 473-504 114-152 (562)
188 1gk6_A Vimentin; intermediate 53.7 42 0.0014 25.9 6.7 44 459-502 4-47 (59)
189 1f5n_A Interferon-induced guan 52.5 1.2E+02 0.0042 32.7 12.3 30 449-478 506-535 (592)
190 1wt6_A Myotonin-protein kinase 51.9 65 0.0022 27.1 7.9 33 470-502 32-64 (81)
191 1hlo_A Protein (transcription 51.8 12 0.0004 30.1 3.4 10 456-465 58-67 (80)
192 1fxk_C Protein (prefoldin); ar 51.1 48 0.0017 28.2 7.4 27 458-484 98-124 (133)
193 1p9i_A Cortexillin I/GCN4 hybr 51.1 19 0.00066 25.1 3.9 18 485-502 8-25 (31)
194 1wle_A Seryl-tRNA synthetase; 50.8 1.1E+02 0.0039 32.3 11.6 25 480-504 120-144 (501)
195 3oa7_A Head morphogenesis prot 50.8 48 0.0016 32.0 7.9 40 465-504 33-72 (206)
196 2fic_A Bridging integrator 1; 50.7 99 0.0034 28.5 10.0 14 433-446 143-156 (251)
197 1ik9_A DNA repair protein XRCC 50.4 72 0.0024 30.3 9.1 37 459-495 136-172 (213)
198 1go4_E MAD1 (mitotic arrest de 50.3 26 0.00088 30.3 5.5 29 456-484 13-41 (100)
199 1ses_A Seryl-tRNA synthetase; 50.2 77 0.0026 32.6 10.0 15 456-470 43-57 (421)
200 2oto_A M protein; helical coil 49.9 96 0.0033 27.5 9.4 24 458-481 60-83 (155)
201 2lz1_A Nuclear factor erythroi 49.4 0.2 6.8E-06 42.9 -7.6 39 417-455 49-87 (90)
202 3onj_A T-snare VTI1; helix, HA 49.4 1.1E+02 0.0039 25.4 9.3 56 451-506 30-89 (97)
203 1m1j_C Fibrinogen gamma chain; 48.9 54 0.0018 34.2 8.6 50 455-504 84-133 (409)
204 2dq3_A Seryl-tRNA synthetase; 48.8 33 0.0011 35.2 7.1 45 460-504 42-89 (425)
205 2b9c_A Striated-muscle alpha t 48.5 1.5E+02 0.0052 26.6 11.2 72 432-503 35-121 (147)
206 2qyw_A Vesicle transport throu 48.2 80 0.0027 26.6 8.2 56 451-506 45-101 (102)
207 1fxk_C Protein (prefoldin); ar 47.0 78 0.0027 26.9 8.1 34 459-492 92-125 (133)
208 2xv5_A Lamin-A/C; structural p 46.9 1E+02 0.0035 25.0 8.3 47 457-503 7-53 (74)
209 3jsv_C NF-kappa-B essential mo 46.8 1.4E+02 0.0048 25.7 9.9 65 440-504 8-82 (94)
210 2xnx_M M protein, M1-BC1; cell 46.5 83 0.0028 29.0 8.5 35 478-512 82-116 (146)
211 3lay_A Zinc resistance-associa 46.5 45 0.0016 30.9 6.9 10 355-364 4-13 (175)
212 3lss_A Seryl-tRNA synthetase; 46.2 57 0.002 34.6 8.5 13 492-504 113-125 (484)
213 2lw1_A ABC transporter ATP-bin 46.1 75 0.0026 25.9 7.5 51 455-505 29-85 (89)
214 2dq3_A Seryl-tRNA synthetase; 45.0 45 0.0016 34.2 7.4 21 453-473 42-62 (425)
215 2eqb_B RAB guanine nucleotide 44.9 1.5E+02 0.0052 25.5 11.8 46 457-502 14-59 (97)
216 2xu6_A MDV1 coiled coil; prote 44.7 45 0.0015 27.5 5.8 48 456-503 22-69 (72)
217 3qne_A Seryl-tRNA synthetase, 44.5 74 0.0025 33.8 9.0 51 455-505 47-100 (485)
218 1d7m_A Cortexillin I; coiled-c 44.3 1.4E+02 0.0049 25.8 9.1 43 445-487 15-57 (101)
219 1gk6_A Vimentin; intermediate 44.0 1.1E+02 0.0037 23.6 8.1 47 454-500 6-52 (59)
220 2oxj_A Hybrid alpha/beta pepti 44.0 30 0.001 25.0 4.1 24 479-502 4-27 (34)
221 1p9i_A Cortexillin I/GCN4 hybr 43.5 30 0.001 24.1 3.9 25 458-482 2-26 (31)
222 3ra3_B P2F; coiled coil domain 42.0 27 0.00091 23.9 3.4 16 467-482 5-20 (28)
223 1a93_B MAX protein, coiled coi 42.0 36 0.0012 24.6 4.2 23 463-485 8-30 (34)
224 2zqm_A Prefoldin beta subunit 41.7 89 0.003 25.6 7.4 30 474-503 75-104 (117)
225 3e98_A GAF domain of unknown f 41.3 65 0.0022 30.9 7.4 42 457-502 67-108 (252)
226 2l5g_B Putative uncharacterize 41.2 70 0.0024 24.1 5.8 32 474-505 7-38 (42)
227 1fmh_A General control protein 40.9 34 0.0012 24.1 3.9 27 478-504 3-29 (33)
228 3iox_A AGI/II, PA; alpha helix 40.6 3E+02 0.01 29.7 12.7 44 434-480 16-59 (497)
229 4b4t_K 26S protease regulatory 40.5 48 0.0016 34.2 6.7 39 458-496 52-90 (428)
230 2zvf_A Alanyl-tRNA synthetase; 40.2 22 0.00075 31.2 3.7 31 458-488 28-58 (171)
231 2oa5_A Hypothetical protein BQ 40.1 15 0.00051 32.4 2.5 23 478-500 10-32 (110)
232 3he4_A Synzip6; heterodimeric 40.1 38 0.0013 26.2 4.4 34 457-490 19-52 (56)
233 3tq2_A KE1; parallel three hel 39.6 75 0.0026 22.8 5.5 31 472-502 4-34 (36)
234 3ol1_A Vimentin; structural ge 39.4 1.8E+02 0.0063 25.0 12.5 38 460-497 67-104 (119)
235 1kd8_B GABH BLL, GCN4 acid bas 39.4 60 0.0021 23.7 5.1 18 464-481 3-20 (36)
236 1oxz_A ADP-ribosylation factor 39.3 2.5E+02 0.0084 26.3 11.6 79 422-503 35-127 (186)
237 3ljm_A Coil Ser L9C; de novo d 39.3 47 0.0016 23.2 4.3 20 483-502 8-27 (31)
238 3lay_A Zinc resistance-associa 39.2 74 0.0025 29.5 7.2 14 486-499 116-129 (175)
239 1qvr_A CLPB protein; coiled co 38.9 3.5E+02 0.012 29.6 13.5 39 433-473 378-419 (854)
240 1zxa_A CGMP-dependent protein 38.6 43 0.0015 27.2 4.8 33 451-483 21-53 (67)
241 3he4_A Synzip6; heterodimeric 38.4 16 0.00056 28.2 2.2 37 469-505 17-53 (56)
242 4dci_A Uncharacterized protein 38.4 2.2E+02 0.0075 26.0 10.0 15 490-504 84-98 (150)
243 2xzr_A Immunoglobulin-binding 38.3 2E+02 0.007 25.2 12.2 68 437-504 34-104 (114)
244 3qh9_A Liprin-beta-2; coiled-c 38.2 1.8E+02 0.0062 24.5 9.1 36 455-490 26-61 (81)
245 3gp4_A Transcriptional regulat 38.1 83 0.0028 27.5 7.0 30 456-485 89-118 (142)
246 4e61_A Protein BIM1; EB1-like 37.9 1.7E+02 0.0058 25.6 8.7 19 464-482 20-38 (106)
247 2b5u_A Colicin E3; high resolu 37.8 2E+02 0.007 31.2 11.0 17 457-473 316-332 (551)
248 2fxo_A Myosin heavy chain, car 37.6 2E+02 0.0069 24.8 12.4 48 458-505 65-119 (129)
249 2j5u_A MREC protein; bacterial 37.5 15 0.00051 35.4 2.3 6 507-512 54-59 (255)
250 4dzn_A Coiled-coil peptide CC- 37.5 64 0.0022 22.8 4.8 23 474-496 7-29 (33)
251 3uux_B Mitochondrial division 37.3 1.6E+02 0.0055 29.0 9.4 28 456-483 164-191 (242)
252 3viq_B Mating-type switching p 37.2 91 0.0031 26.3 6.7 47 456-502 9-60 (85)
253 1kd8_A GABH AIV, GCN4 acid bas 37.1 42 0.0014 24.5 4.0 10 466-475 5-14 (36)
254 1fzc_C Fibrin; blood coagulati 37.0 17 0.00058 36.7 2.7 41 457-497 6-46 (319)
255 3m48_A General control protein 37.0 38 0.0013 24.3 3.7 23 480-502 4-26 (33)
256 3q0x_A Centriole protein; cent 36.7 1.4E+02 0.0047 29.0 8.8 44 460-503 169-212 (228)
257 3cl3_D NF-kappa-B essential mo 36.6 18 0.00061 32.8 2.5 14 459-472 34-47 (130)
258 1x8y_A Lamin A/C; structural p 36.4 1.8E+02 0.006 23.8 10.0 46 456-501 29-74 (86)
259 3w03_C DNA repair protein XRCC 36.3 79 0.0027 29.9 6.9 11 179-189 11-21 (184)
260 4fla_A Regulation of nuclear P 35.7 1.6E+02 0.0055 26.7 8.6 48 455-502 86-133 (152)
261 2zdi_C Prefoldin subunit alpha 35.5 56 0.0019 28.7 5.5 12 400-411 80-91 (151)
262 4b4t_M 26S protease regulatory 35.3 25 0.00084 36.5 3.6 34 467-500 37-70 (434)
263 1m1j_C Fibrinogen gamma chain; 35.2 3.3E+02 0.011 28.3 12.0 45 462-506 84-128 (409)
264 3he4_B Synzip5; heterodimeric 35.0 1E+02 0.0035 23.1 5.9 16 454-469 9-24 (46)
265 1zhc_A Hypothetical protein HP 34.9 59 0.002 26.2 5.1 53 457-510 19-71 (76)
266 1l8d_A DNA double-strand break 34.8 1.3E+02 0.0045 24.6 7.4 33 473-505 68-100 (112)
267 3trt_A Vimentin; cytoskeleton, 34.8 1.6E+02 0.0055 22.9 9.4 24 483-506 49-72 (77)
268 1f5n_A Interferon-induced guan 34.8 3.3E+02 0.011 29.3 12.3 14 260-273 289-302 (592)
269 2akf_A Coronin-1A; coiled coil 34.5 43 0.0015 23.7 3.6 21 487-507 10-30 (32)
270 1gqe_A Release factor 2, RF2; 34.4 1.9E+02 0.0065 29.8 9.9 24 486-509 97-120 (365)
271 1fxk_A Prefoldin; archaeal pro 34.3 96 0.0033 25.1 6.4 24 458-481 68-91 (107)
272 2q6q_A Spindle POLE BODY compo 34.2 1.9E+02 0.0066 23.8 7.9 41 459-499 7-47 (74)
273 2ocy_A RAB guanine nucleotide 33.9 2.8E+02 0.0097 25.5 10.2 43 461-503 78-128 (154)
274 2ve7_C Kinetochore protein NUF 33.3 28 0.00095 33.7 3.4 30 453-482 153-182 (250)
275 4e61_A Protein BIM1; EB1-like 33.1 2.3E+02 0.0079 24.7 8.8 23 456-478 26-48 (106)
276 4gkw_A Spindle assembly abnorm 32.8 1.4E+02 0.0046 27.6 7.6 23 481-503 138-160 (167)
277 1m1j_B Fibrinogen beta chain; 32.8 4.7E+02 0.016 27.8 12.7 30 474-503 166-195 (464)
278 3w03_C DNA repair protein XRCC 32.8 82 0.0028 29.8 6.4 8 431-438 137-144 (184)
279 4b4t_J 26S protease regulatory 32.5 46 0.0016 34.4 5.1 29 454-482 24-52 (405)
280 3rrk_A V-type ATPase 116 kDa s 32.4 2E+02 0.0069 27.8 9.4 28 457-484 228-255 (357)
281 3vp9_A General transcriptional 32.2 1.4E+02 0.0048 25.5 7.2 45 458-502 39-87 (92)
282 3vem_A Helicase protein MOM1; 32.1 2.1E+02 0.0072 25.4 8.5 31 449-479 55-85 (115)
283 1deb_A APC protein, adenomatou 32.0 1.3E+02 0.0044 23.6 6.2 32 457-488 12-43 (54)
284 3c9i_A Tail needle protein GP2 31.6 2E+02 0.0069 28.1 9.0 45 461-505 90-134 (242)
285 1hs7_A Syntaxin VAM3; UP-and-D 31.6 1E+02 0.0036 26.2 6.3 50 458-507 36-88 (97)
286 1r8e_A Multidrug-efflux transp 31.4 1.3E+02 0.0045 27.6 7.6 63 411-483 45-107 (278)
287 4ath_A MITF, microphthalmia-as 31.0 97 0.0033 26.0 5.9 32 454-485 48-79 (83)
288 3rrk_A V-type ATPase 116 kDa s 31.0 98 0.0033 30.0 6.9 17 482-498 112-128 (357)
289 3ghg_C Fibrinogen gamma chain; 31.0 1.3E+02 0.0044 31.5 8.1 40 465-504 94-133 (411)
290 1x8y_A Lamin A/C; structural p 30.9 2.2E+02 0.0075 23.3 9.3 50 451-500 31-80 (86)
291 1gk7_A Vimentin; intermediate 30.4 68 0.0023 23.3 4.2 15 485-499 22-36 (39)
292 1gk4_A Vimentin; intermediate 30.3 2E+02 0.0068 23.3 7.6 49 454-502 25-73 (84)
293 1t3j_A Mitofusin 1; coiled coi 30.3 2.2E+02 0.0076 24.4 8.1 42 457-502 49-90 (96)
294 3a5t_A Transcription factor MA 30.2 0.6 2.1E-05 40.8 -7.8 53 448-503 40-92 (107)
295 3viq_B Mating-type switching p 30.0 2.5E+02 0.0086 23.7 9.2 24 459-482 5-28 (85)
296 4ati_A MITF, microphthalmia-as 29.4 20 0.00069 31.1 1.6 41 454-498 73-113 (118)
297 4fla_A Regulation of nuclear P 29.4 3.2E+02 0.011 24.7 9.8 60 441-500 65-124 (152)
298 3iox_A AGI/II, PA; alpha helix 29.2 2.8E+02 0.0095 29.9 10.3 22 461-482 33-54 (497)
299 1u00_A HSC66, chaperone protei 29.2 2.2E+02 0.0075 26.5 8.7 22 411-434 116-137 (227)
300 3lss_A Seryl-tRNA synthetase; 29.0 2.6E+02 0.0089 29.6 10.1 21 485-505 113-133 (484)
301 1fmh_B General control protein 29.0 70 0.0024 22.6 3.9 23 481-503 6-28 (33)
302 2i1j_A Moesin; FERM, coiled-co 28.9 1E+02 0.0034 33.0 7.1 32 457-488 337-368 (575)
303 1l8d_A DNA double-strand break 28.7 2.4E+02 0.0083 23.1 11.7 9 491-499 79-87 (112)
304 1j1d_C Troponin I, TNI; THIN f 28.6 2.2E+02 0.0075 25.6 8.2 38 465-502 61-105 (133)
305 2pms_C Pneumococcal surface pr 28.5 1.9E+02 0.0064 26.0 7.6 63 449-513 55-124 (125)
306 2i1j_A Moesin; FERM, coiled-co 28.5 42 0.0014 35.9 4.1 7 123-129 80-86 (575)
307 2js5_A Uncharacterized protein 28.4 2.5E+02 0.0084 23.1 8.1 27 477-503 39-65 (71)
308 2xus_A Breast cancer metastasi 28.3 1.6E+02 0.0054 22.7 6.1 24 451-478 6-29 (49)
309 1gk4_A Vimentin; intermediate 27.9 2.4E+02 0.0082 22.8 11.8 46 454-499 32-77 (84)
310 3mxz_A Tubulin-specific chaper 27.8 3.1E+02 0.01 23.9 8.9 66 434-506 15-83 (116)
311 2akf_A Coronin-1A; coiled coil 27.7 73 0.0025 22.5 3.8 25 459-483 3-27 (32)
312 3swk_A Vimentin; cytoskeleton, 27.6 2.5E+02 0.0087 23.0 8.0 54 456-509 29-82 (86)
313 2ve7_A Kinetochore protein HEC 27.2 63 0.0021 32.0 4.8 29 455-483 185-213 (315)
314 2zdi_C Prefoldin subunit alpha 27.1 1.4E+02 0.0049 26.1 6.7 22 460-481 110-131 (151)
315 2p22_A Suppressor protein STP2 27.0 1.8E+02 0.006 27.2 7.5 19 427-445 23-41 (174)
316 1tu3_F RAB GTPase binding effe 26.9 1.1E+02 0.0038 25.6 5.5 50 456-512 13-65 (79)
317 4ad8_A DNA repair protein RECN 26.4 3.7E+02 0.013 27.4 10.6 33 437-469 189-221 (517)
318 3sja_C Golgi to ER traffic pro 26.4 1E+02 0.0036 24.8 5.1 42 459-500 10-56 (65)
319 4e17_B Catenin alpha-1; four h 26.3 24 0.00082 26.3 1.3 12 262-273 26-37 (40)
320 3thf_A Protein shroom; coiled- 26.3 2.1E+02 0.0071 27.3 7.9 31 450-480 14-44 (190)
321 2l5g_A GPS2 protein, G protein 26.3 67 0.0023 23.7 3.5 20 455-474 15-34 (38)
322 1j1e_C Troponin I, TNI; THIN f 26.3 2.3E+02 0.0079 26.7 8.2 39 464-502 60-105 (180)
323 3ra3_B P2F; coiled coil domain 26.3 52 0.0018 22.5 2.8 13 491-503 8-20 (28)
324 3ra3_A P1C; coiled coil domain 26.2 1E+02 0.0034 21.1 4.1 15 468-482 6-20 (28)
325 1cii_A Colicin IA; bacteriocin 26.1 4.4E+02 0.015 28.7 11.0 41 455-495 363-403 (602)
326 1hwt_C Protein (heme activator 25.7 37 0.0013 26.2 2.3 22 453-474 56-77 (81)
327 1ytz_I Troponin I; muscle, THI 25.2 1.1E+02 0.0036 29.1 5.7 57 448-504 35-97 (182)
328 3tnu_A Keratin, type I cytoske 24.8 3.4E+02 0.011 23.4 11.8 45 457-501 79-123 (131)
329 1avy_A Fibritin, gpwac M; bact 24.8 1.6E+02 0.0053 24.5 5.9 29 459-487 12-40 (74)
330 3gpv_A Transcriptional regulat 24.6 1.7E+02 0.0059 25.5 6.7 34 409-443 53-86 (148)
331 2l5g_B Putative uncharacterize 24.5 1.5E+02 0.005 22.3 5.2 33 458-490 5-37 (42)
332 3mtu_A Tropomyosin alpha-1 cha 24.5 2.6E+02 0.0088 22.5 7.2 27 458-484 5-31 (75)
333 3t97_C Nuclear pore glycoprote 24.4 67 0.0023 25.6 3.6 42 464-505 14-55 (64)
334 3okq_A BUD site selection prot 24.4 4.1E+02 0.014 24.3 10.5 58 442-499 8-77 (141)
335 2lq4_p Lysophosphatidic acid r 24.0 15 0.0005 30.1 -0.3 27 474-500 53-79 (80)
336 2ocy_A RAB guanine nucleotide 24.0 4.2E+02 0.014 24.3 12.3 23 480-502 112-134 (154)
337 3hhm_B NISH2 P85alpha; PI3KCA, 24.0 3E+02 0.01 28.0 9.3 8 435-442 199-206 (373)
338 3mov_A Lamin-B1; LMNB1, B-type 23.9 3.2E+02 0.011 22.9 10.0 45 458-502 40-84 (95)
339 2p4v_A Transcription elongatio 23.9 3.6E+02 0.012 24.1 8.7 50 457-506 11-69 (158)
340 2aze_A Transcription factor DP 23.8 1.8E+02 0.0061 26.9 6.8 19 450-468 21-39 (155)
341 3kin_B Kinesin heavy chain; mo 23.8 1E+02 0.0035 26.5 5.0 13 470-482 97-109 (117)
342 1vcs_A Vesicle transport throu 23.6 1.5E+02 0.0051 24.8 5.8 55 451-505 34-89 (102)
343 2z5i_A TM, general control pro 23.5 2.4E+02 0.0081 21.4 6.4 19 460-478 10-28 (52)
344 1fmh_B General control protein 23.4 1.7E+02 0.0058 20.6 5.0 26 458-483 4-29 (33)
345 3mud_A DNA repair protein XRCC 23.4 2E+02 0.0068 27.1 7.2 7 432-438 121-127 (175)
346 3ljm_A Coil Ser L9C; de novo d 23.2 1.4E+02 0.0047 20.8 4.5 24 458-481 4-27 (31)
347 1hlo_A Protein (transcription 22.7 1.5E+02 0.0052 23.5 5.5 48 454-505 28-79 (80)
348 2z5i_A TM, general control pro 22.7 1.2E+02 0.0042 23.0 4.7 36 444-479 8-43 (52)
349 3gpv_A Transcriptional regulat 22.4 1.4E+02 0.0047 26.1 5.7 11 411-421 74-84 (148)
350 1deq_A Fibrinogen (alpha chain 22.4 2.6E+02 0.0089 29.3 8.4 23 484-506 135-157 (390)
351 2efr_A General control protein 22.3 4.5E+02 0.015 24.0 12.9 55 441-495 56-110 (155)
352 1joc_A EEA1, early endosomal a 22.3 3.8E+02 0.013 23.1 8.4 35 466-500 15-49 (125)
353 2efr_A General control protein 22.3 4.5E+02 0.015 24.0 11.6 30 457-486 79-108 (155)
354 3t98_B Nucleoporin NUP58/NUP45 22.3 2.1E+02 0.0072 24.1 6.5 51 453-503 24-78 (93)
355 3he5_B Synzip2; heterodimeric 22.2 2.7E+02 0.0091 21.3 6.9 26 459-484 21-46 (52)
356 2e7s_A RAB guanine nucleotide 22.0 2.7E+02 0.0093 25.2 7.5 16 461-476 66-81 (135)
357 3azd_A Short alpha-tropomyosin 21.9 25 0.00085 25.3 0.6 27 457-483 6-32 (37)
358 3s84_A Apolipoprotein A-IV; fo 21.9 5.4E+02 0.019 24.9 10.2 25 443-467 164-188 (273)
359 3coq_A Regulatory protein GAL4 21.8 80 0.0027 24.5 3.6 22 455-476 45-66 (89)
360 1ykh_B RNA polymerase II holoe 21.5 2.1E+02 0.007 25.2 6.6 19 461-479 91-109 (132)
361 2kho_A Heat shock protein 70; 21.5 2E+02 0.007 30.3 7.7 48 455-504 541-593 (605)
362 3plt_A Sphingolipid long chain 21.5 5.4E+02 0.019 25.1 10.0 54 431-484 107-160 (234)
363 3tnu_B Keratin, type II cytosk 21.4 3.9E+02 0.013 22.9 11.8 44 458-501 78-121 (129)
364 3a2a_A Voltage-gated hydrogen 21.3 2.5E+02 0.0084 22.3 6.1 25 458-482 21-45 (58)
365 3p8q_A GP5, head protein; viru 21.2 20 0.00069 35.9 0.0 30 457-486 36-65 (385)
366 1x79_B RAB GTPase binding effe 21.2 4.2E+02 0.014 23.2 8.6 42 458-499 34-75 (112)
367 1lwu_B Fibrinogen beta chain; 21.1 1.4E+02 0.0046 30.1 6.0 15 465-479 31-45 (323)
368 3swk_A Vimentin; cytoskeleton, 21.1 3.4E+02 0.012 22.2 12.0 35 467-501 47-81 (86)
369 2aze_A Transcription factor DP 20.7 3.3E+02 0.011 25.2 7.9 31 465-495 8-38 (155)
370 3he4_B Synzip5; heterodimeric 20.6 2.7E+02 0.0093 20.8 6.6 14 459-472 7-20 (46)
371 3c3g_A Alpha/beta peptide with 20.6 1.9E+02 0.0064 20.8 4.8 21 482-502 6-26 (33)
372 3jsv_C NF-kappa-B essential mo 20.5 1.5E+02 0.0052 25.5 5.3 51 454-504 39-89 (94)
373 3swy_A Cyclic nucleotide-gated 20.3 2.8E+02 0.0097 20.9 6.9 29 456-484 6-34 (46)
374 1yke_B RNA polymerase II holoe 20.2 1.9E+02 0.0066 26.1 6.2 29 461-489 91-119 (151)
375 4b9q_A Chaperone protein DNAK; 20.1 2.3E+02 0.0077 30.0 7.7 12 410-421 506-517 (605)
376 4b4t_M 26S protease regulatory 20.0 98 0.0033 32.1 4.8 32 460-491 37-68 (434)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.47 E-value=5.4e-14 Score=109.14 Aligned_cols=52 Identities=33% Similarity=0.526 Sum_probs=48.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
||++|+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999887643
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.29 E-value=1.5e-11 Score=97.17 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=52.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
+||.+|+.+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999887776655543
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.28 E-value=1.4e-11 Score=96.28 Aligned_cols=56 Identities=30% Similarity=0.484 Sum_probs=50.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
||.+|+.+||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999988777655554
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.17 E-value=6.4e-11 Score=92.97 Aligned_cols=55 Identities=31% Similarity=0.530 Sum_probs=49.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
|+.+|..+||++|++||+||++|+.+||.+|..|+.+|..|..++..|+.++..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668889999999999999999999999999999999999999998877755544
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.03 E-value=3.7e-10 Score=89.78 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=42.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 437 KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
++..+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|..++
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345699999999999999999999999999999999998888877643
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.00 E-value=6.9e-10 Score=90.32 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=58.0
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
+++...||...||.|++.+|+||.+||.+||.+|..|+.++..|..++..|..++..|..||.+||
T Consensus 5 ~~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 5 DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344557999999999999999999999999999999999999988888888888888888887764
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.94 E-value=2.2e-09 Score=85.04 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
|+.+++.+||.+|+|+|+||++++++||.+++.|+.+|..|..++..|+.++..|..
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999999988876666543
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.50 E-value=5.9e-07 Score=75.80 Aligned_cols=65 Identities=22% Similarity=0.204 Sum_probs=55.4
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkE 494 (514)
..|++-..|..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.++..|..-..+
T Consensus 11 k~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777789999999999999999999999999999999999999999887766655544333
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.50 E-value=6.2e-07 Score=74.30 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=52.2
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
..|++-..|..+|.++|+|||+++++...+++.+|..|+.||..|..+|..|+.++..|.
T Consensus 11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777899999999999999999999999999999999999999988777655543
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.27 E-value=1.9e-08 Score=87.71 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=48.9
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
...-|.+||.++||.+||.+|.||++.+.+||.++..|+.+...|..++..| ..|...||.++++|.+
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l-------~~E~~~lk~k~e~L~~ 100 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASM-------KLELDALRSKYEALQN 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHH-------HHTTTSSSSCC-----
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999998887777766666555544 4455555555555543
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.24 E-value=4.2e-06 Score=71.19 Aligned_cols=66 Identities=18% Similarity=0.314 Sum_probs=51.1
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
...-|..||-++||.+|+.+|.||...+.+||.++..|+.+...|..++.. +..|-..+|.++++|
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~-------~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR-------LARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 345688999999999999999999999999998888777666666655554 445666666666654
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.46 E-value=0.00018 Score=53.82 Aligned_cols=36 Identities=33% Similarity=0.543 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
|+|+.+||.+++.|+..|.+|..++..|++++.+|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 589999999999999999999999999888666654
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.74 E-value=0.00036 Score=59.71 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=38.6
Q ss_pred HHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 010222 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEH 462 (514)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~ 462 (514)
+|.+..++...|.+-.+...|.+||..+||++|+++|+||...+++|+.
T Consensus 42 ~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 42 SELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 4555566556666666667899999999999999999999999998875
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=94.83 E-value=0.097 Score=42.03 Aligned_cols=41 Identities=34% Similarity=0.393 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
+..-|.||++|.+-|..|+.++..+|++++.|..||..|+.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 44568999999999999999999999999999999999874
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=94.73 E-value=0.15 Score=42.75 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNE 494 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkE 494 (514)
-++.||.||+.+-..+.-|.-++..|+.++..|..++.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666555554444444444444444444444444
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.70 E-value=0.17 Score=45.49 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+.++.+++|+.+++.+..|...|..++..++.++..+..++.+|+.++..|+.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456788888888888888888888887777777777777777777766654
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.25 E-value=0.44 Score=39.99 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
-|.-|.-+|+.|+.+|..|..++..++.....|..||..|+.+.....
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888888877777778888888887766553
No 18
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=92.81 E-value=0.24 Score=40.80 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
++|.+||.++..++.-..+|...++.-++++..|..+.+.|..|+..++..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~ 64 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468999999999999999999999999999999999999999999888753
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.37 E-value=0.89 Score=46.67 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+|...|..++...+++...|..|+..++++++.|
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444443333
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.26 E-value=1.1 Score=40.27 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 448 RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+.-+.=.+.+++++.++..|..+...+..++..+.+++..|..++.+|..++..|+...
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777888888899999999999999999999999999999999998887543
No 21
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=91.52 E-value=0.76 Score=40.10 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSA-------QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~-------QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
-+||.++..|+.||..|.. ++..|+.++..|.+||..|+.+-+.-.+
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3577777777777766665 6666777777777777777665554443
No 22
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=91.32 E-value=1.1 Score=35.07 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.+.|-++|+.|..||..|++++..-..++..|++|-..+|+-+..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4678999999999999999999998889999999988888766554
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.44 E-value=2.1 Score=49.01 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTL----LQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtl----LQre~~sL~tENkELK~RLQaLE 503 (514)
....+-+++|+.+++.+.+|...|..++.. |+.....|..||..|++++..|+
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555554444432 33455566677777777776666
No 24
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=90.44 E-value=0.93 Score=34.32 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.+..||.+|..|+.||.+|..+.-.-..-..-|..|..-|+.+++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999988876666666667777777776654
No 25
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=90.41 E-value=1.1 Score=34.14 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+||.+|+.|+.-...|..+++.|..+ ...-...||+||..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 56777777766666666666655443 334567899999999876
No 26
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.95 E-value=1.7 Score=35.74 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
++..|++.++.+|..|..+|..|+.+...-..+...++..|..+-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777776666666666655443
No 27
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.65 E-value=0.34 Score=34.76 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
|..||.||+.|-.+|+.|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999998887754
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.65 E-value=0.4 Score=34.60 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|..||.||+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4788999999999999999888877654
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.23 E-value=5.5 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
|.+++++....+++.|+.|++.|...+..+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3333333333333333333333333333333
No 30
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.10 E-value=0.61 Score=34.00 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
.|..||.||+.|-.+++.|..++..|+.-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46789999999999999999888887653
No 31
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.10 E-value=0.66 Score=40.22 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaLE 503 (514)
++...|..|+..||.++..|+
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666665554
No 32
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=89.04 E-value=0.021 Score=48.83 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=31.4
Q ss_pred HHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHH
Q 010222 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRY 456 (514)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqY 456 (514)
+|.+..++...|.+-.+..-+.+||..+||++||++|+||...
T Consensus 46 ~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 46 DDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444445444455555556799999999999999999999753
No 33
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=89.02 E-value=1 Score=37.54 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+++..+++.++.+|..|..+|..|+.+...-..+...++..|..+-
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777776666666655555555554443
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.51 E-value=6.8 Score=36.21 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+.+-.+-++.|+.|...|..++..++.....|..||++|-.|.-
T Consensus 91 l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 91 IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444667888999999999999999999999999999999863
No 35
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=88.22 E-value=1.5 Score=36.39 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+||.+|+.|+.-...|..+++.|..+ ...-...||+||..||.+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 356777777776666666666655443 33456789999999998765
No 36
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.18 E-value=0.55 Score=34.26 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
.|..||.||+.|..+++.|..++..|+..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467899999999999999998888876543
No 37
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=88.16 E-value=0.57 Score=45.46 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=31.9
Q ss_pred HhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 425 LAEIALTDPKRAKRILANRQSAARSKERKMRYISEL-------EHKVQTLQTEATTLSAQLTLLQRDSV 486 (514)
Q Consensus 425 LaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeEL-------E~KVq~LqtENssLs~QLtlLQre~~ 486 (514)
+..+..-++||.+|+|+-=.-=.|.|+-|..-++++ ..++++|+.||..|.+++..|+++..
T Consensus 111 l~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 111 TADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566789999999876666666666665544444 34444444444444444444443333
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=88.11 E-value=1.5 Score=32.98 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
..|+.+..+|..++..|++....|..||.-|++-
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444455555555555555555555555544443
No 39
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=87.66 E-value=0.65 Score=33.48 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|..||.||+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4778999999999999999888887764
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=87.32 E-value=2.8 Score=36.85 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+..|+..+..|..++..|...|-.|++.++.|....+..-.-|+.+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 4446666666666666666666666666666665555544444433
No 41
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.16 E-value=11 Score=31.77 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATT 473 (514)
Q Consensus 455 qYLeELE~KVq~LqtENss 473 (514)
.-|..|.++++.|+.+...
T Consensus 44 ~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 42
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.02 E-value=0.71 Score=37.37 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
..||..|+.+++.|+.|...|..++..|+
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~ 74 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666555554444443333
No 43
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.68 E-value=3 Score=37.34 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.+|+.|+.|+.+|..+|..+..+...|..+|..|..+|.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 357777777777777777777777777778887777764
No 44
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=86.55 E-value=4.4 Score=34.26 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGII 513 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL~ 513 (514)
--.||..|..+++.++.++..|..||.+|+.-.+....-+.+.+-||
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34589999999999999999999999999887766666666666554
No 45
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.38 E-value=1.3 Score=37.67 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 447 qRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
+|-+.|-+-|-..=-.+ .+ .+...|..++..|+.+...|..|+.+++..+..+.+..
T Consensus 29 ~RRtlKNRgyAq~CR~K--r~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYK--RV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555443222 22 23455666777777777888889999999888886643
No 46
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=86.12 E-value=1.9 Score=33.23 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
++..|+.++..|..+++.|..-+.....|...|+.+|+.|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444555555555544
No 47
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.87 E-value=1.2 Score=31.90 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
|..||.||+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999888887754
No 48
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=85.34 E-value=0.95 Score=32.68 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4678999999999999999988887764
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.08 E-value=6 Score=39.73 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaLE 503 (514)
.....|+.|..+|.++|+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554443
No 50
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=85.02 E-value=3.1 Score=34.47 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|.++..|+....-=..-.+.|..+.-.|..||+-|..||+.|.+
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 44445555544444555667788888999999999999998865
No 51
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=84.95 E-value=1 Score=32.54 Aligned_cols=28 Identities=11% Similarity=0.399 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|..||.||+.|-.++..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4678999999999999999888877654
No 52
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=84.62 E-value=1.5 Score=31.43 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
|..||.||+.|-.++..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578999999999999999888887654
No 53
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=84.10 E-value=1.5 Score=32.12 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 468 qtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
-.||..|+..++.-+.++..|..||.+|+.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 368999999999999999999999999874
No 54
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.02 E-value=1.2 Score=32.21 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|..||.||+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3678999999999999999888877654
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.96 E-value=4.1 Score=38.63 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+..|+..+..|+..+..|..+|..|+..++.|....+.+..-|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sl 132 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSL 132 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH
Confidence 3444444444444444444444444444444444444443333
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=83.58 E-value=5.2 Score=33.80 Aligned_cols=47 Identities=9% Similarity=0.278 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
..-|..|+.+...|..+-..++.+...++.+...+..+...|..++.
T Consensus 38 ~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 38 AENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444555555555555555544
No 57
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=83.42 E-value=2 Score=35.25 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
..||..|+.+.+.|+.|...|..++..|+.++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888887777766666655555443
No 58
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.33 E-value=7.4 Score=32.43 Aligned_cols=46 Identities=11% Similarity=0.279 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+-+.+|-.+++.|+.|+..|+.+++.++.++..|....+++-..|.
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999988888888887776664
No 59
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=83.03 E-value=3 Score=36.27 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 484 DSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 484 e~~sL~tENkELK~RLQaLEQQaQL 508 (514)
+...|..+|..|..+|+.||.|++.
T Consensus 92 ~~~~l~~~n~~L~~riqeLE~~a~~ 116 (118)
T 4ati_A 92 RQKKLEHANRHLLLRVQELEMQARA 116 (118)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888999999999999998874
No 60
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=83.02 E-value=4.1 Score=34.29 Aligned_cols=44 Identities=27% Similarity=0.386 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
-.||..|...++.+..+. .+...|...|..|..|+|.||-|++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 678877766665544433 34456788999999999999999875
No 61
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.85 E-value=19 Score=29.77 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
....+||.+...|..+.+.|..++..++..+..|.....+|..+|..|+..+
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346799999999999999999999999999999999999999999886543
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.67 E-value=3.9 Score=44.22 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 447 ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 447 qRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
......+.+|.+|||++++.|+.++..-..+|..||..+..+..+.+.|..-|
T Consensus 102 ~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 102 NNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888899999999998888777888888887777777766665443
No 63
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.67 E-value=7.1 Score=34.13 Aligned_cols=79 Identities=15% Similarity=0.249 Sum_probs=47.8
Q ss_pred cChHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 431 TDPKRAKRILANRQSAARSKERK--MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRK--KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
.++|=.|=|+.| ||.--+|- .=.|+-|-.+++.++.....|.+++....+++..+......|+.++..|..+..=
T Consensus 7 vEEKyrKAMVsn---AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 7 VEEKYKKAMVSN---AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp -CCTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667666 44333322 1134556666666666666666666666666777777777777777777666666
Q ss_pred hhhc
Q 010222 509 RDGI 512 (514)
Q Consensus 509 rDAL 512 (514)
||.|
T Consensus 84 RD~L 87 (103)
T 4h22_A 84 REEM 87 (103)
T ss_dssp TTSC
T ss_pred HHHH
Confidence 6554
No 64
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=82.39 E-value=3.7 Score=34.33 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 468 qtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
-.||..|+.+|+.++.++..|..||..|+.=++....-+-+.+.|
T Consensus 33 L~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laevl~~l 77 (79)
T 2zxx_A 33 LKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999999999988777666655555544
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.96 E-value=2.5 Score=32.57 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.|..|+.||.+|..++. .|..++.+|+.+|.
T Consensus 20 d~eaLk~E~~eLk~k~~-------~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE-------AIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 44555555555554444 44455666665553
No 66
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=81.91 E-value=8.4 Score=40.83 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQR-----------DSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQr-----------e~~sL~tENkELK~RLQaLEQQ 505 (514)
+|..+++.|+.+.+.++.+|..+.. +...|..|-++|+.+|..|+.+
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665442 3446777777777777777643
No 67
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=81.73 E-value=14 Score=29.03 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
|...|.+||.++..++.-...+..+++.+......+..++..=+..++.|+++
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~k 56 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQR 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45678889999999888888887788777777777766666656677777763
No 68
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.51 E-value=6.3 Score=32.34 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLL------QRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlL------Qre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+-++.||.++..|+.+...|..++..- -..+..|..+..++..+|..+...+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999888641 24566777788888888877766553
No 69
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.41 E-value=21 Score=31.57 Aligned_cols=64 Identities=17% Similarity=0.250 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 444 QSAARSKERKMRYISELEHKVQTLQT---EATTLSAQLTLLQ-------RDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 444 ESAqRSReRKKqYLeELE~KVq~Lqt---ENssLs~QLtlLQ-------re~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+|...=..|+.-+++|+.++..++. .+.-|.+|+.... .....+..|+.+|+.+|..|..+.+
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444455556666655555555 3444555555544 3445577777778887777766543
No 70
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.40 E-value=7.1 Score=32.89 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDG 511 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrDA 511 (514)
++.-.+.+.|-.|...|+-+++.++++........+.-|..|+.|.+++..+|+
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ 68 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDA 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHH
Confidence 333445556666677777777777777766666666666777777666665554
No 71
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=81.24 E-value=2 Score=42.46 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
.+.+|+.++..|+..|..|...+..+++++..|+.|++.|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777777777777666666666665555555554
No 72
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.94 E-value=14 Score=28.66 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..|+.+...|..+|.+|+.+|+.|..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554443
No 73
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.92 E-value=21 Score=33.46 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
+..-=+.=++.|.+-.+.+.+|+.+|..|+.|...++..++.++.++..|......|
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334456677777888888888888888888888776666554444444333333
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.25 E-value=8 Score=35.78 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|+.++..|+.+...-...++.++.++..|..+++.+..++..|++
T Consensus 80 l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 80 KEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444445555556666666666666666665555
No 75
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=80.25 E-value=6.7 Score=30.21 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|+++..|..-|..|..+++.|+..+..++.|+..|+.=|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 678888888899999999999998888888877776544
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=80.22 E-value=19 Score=29.99 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 471 ATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 471 NssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
...|..++..|+.++..|.-++.++.-+|+.|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555555555555555555443
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.61 E-value=6.3 Score=50.26 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 466 ~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.++.+..+|.++++.|+.+++.+..|...|+.+++..+....
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555666666666655544433
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.57 E-value=2.2 Score=32.88 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+..|+.++..|..++.+|+.+++.|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 79
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=79.35 E-value=8.7 Score=30.56 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=23.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSAARSKERKMRYISELEHKVQTLQTEATTL 474 (514)
Q Consensus 439 iLkNRESAqRSReRKKqYLeELE~KVq~LqtENssL 474 (514)
.-+||.+++++|.|=++.++-...-...-..||..|
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 368999999999997776655544333333444444
No 80
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.35 E-value=2.1 Score=33.19 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..|+.+...|..+|.+|+.++..|+.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555554443
No 81
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=79.33 E-value=4.7 Score=33.45 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..||..|+.+.+.|+.+... |..+|..|+.+|+.|
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~--------------L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDL--------------LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHh
Confidence 46777776666665555443 444555555555554
No 82
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.26 E-value=11 Score=43.25 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.++|+.+|..|+.||..|..|+..|+.
T Consensus 1018 ~~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1018 KHETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555443
No 83
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.65 E-value=13 Score=42.70 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=11.3
Q ss_pred CCCCCCCCCCChhhhhhhhc
Q 010222 2 GGDSNEGNGGNTDMMQRIQS 21 (514)
Q Consensus 2 ~~~~~~~~~~~~~~~~r~~~ 21 (514)
-|.|.-|-|++.-.+-+...
T Consensus 175 sGeSGaGKTe~~k~~~~yla 194 (1184)
T 1i84_S 175 TGESGAGKTENTKKVIQYLA 194 (1184)
T ss_dssp CCSTTSSTTHHHHHHHHHHH
T ss_pred ecCCCCCccHHHHHHHHHHH
Confidence 35666666666655544443
No 84
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.46 E-value=9.9 Score=36.07 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++.|+.++..|..++..|+.+|-.||+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666655554
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.44 E-value=14 Score=35.12 Aligned_cols=50 Identities=4% Similarity=0.066 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+.+|+.++..|+.....+..++..++.+...+..+..+++.++...++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666655555555555555555555443
No 86
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=78.42 E-value=1.9 Score=42.57 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|.+++.|+.++..|..++..|...+..+..|...||.+|+.|.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788888888888888888888888888888888888887754
No 87
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=78.15 E-value=6.2 Score=32.38 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.+||.++..|+...+-+..-|..|.........+...|+.+|..|.++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888887777777777777777777777777777777776554
No 88
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=77.96 E-value=5.5 Score=31.63 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|++|..|..-|..|..++..|+.++.....|+..|..-|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888888888888877776544
No 89
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.66 E-value=10 Score=29.72 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 482 QRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 482 Qre~~sL~tENkELK~RLQaLE 503 (514)
+.+...|..+|.+|+.+++.|+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444433
No 90
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.59 E-value=31 Score=29.07 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
+|.+...++.|+..|..++..|+.++..+.....+.
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444433333333333
No 91
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.55 E-value=3.1 Score=30.06 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
++.++...+++...|+.+|..|..++..||
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 455555666666666666666666665553
No 92
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.24 E-value=9.6 Score=33.65 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 448 RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
+-+..-+.|+.+|+.+|..|+.|...-+.+...+..++..|..|...|
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677788999999999988888877766555555555555555554
No 93
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.89 E-value=11 Score=39.42 Aligned_cols=66 Identities=12% Similarity=0.203 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARS-KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 434 KR~KRiLkNRESAqRS-ReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+-++.+++.|+.-+.- -.+=.+|.++||+++..|+..+..-...|..|+..+..+..+.+.|...|
T Consensus 91 ~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 91 KNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555543333 33446899999999999998877766688888888777777777766554
No 94
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.73 E-value=16 Score=31.89 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+||.++..|+........++..|......|..+..+|+.+|+.++
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444443
No 95
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=76.60 E-value=48 Score=31.17 Aligned_cols=85 Identities=6% Similarity=0.103 Sum_probs=49.4
Q ss_pred HHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Q 010222 414 AELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISE--------------------LEHKVQTLQTEATT 473 (514)
Q Consensus 414 ~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeE--------------------LE~KVq~LqtENss 473 (514)
+++.|+++..+++ | ..+..+++++..-|.-..+-++-|..||-+ |+.+...++.....
T Consensus 19 e~aek~~~~k~~~-l-e~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVae 96 (169)
T 3k29_A 19 DRAEKVVKEKRRL-L-ELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNK 96 (169)
T ss_dssp HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777655543 1 235677788888888888888877765544 55666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
...++..-++.+..-..+..+.+..++
T Consensus 97 q~e~Ve~e~q~Le~ar~el~qArke~e 123 (169)
T 3k29_A 97 QKENVLAASKELERAEVELTKRRKEEE 123 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544443333333333333333
No 96
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=76.58 E-value=4 Score=28.80 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
+..||++|.+.+.||-.|..++..|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567888888888887777777766654
No 97
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.42 E-value=22 Score=29.30 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaLEQ 504 (514)
.....|..||..|+.+|+.|+.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.30 E-value=16 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQ--------LTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~Q--------LtlLQre~~sL~tENkELK~RLQ 500 (514)
+.|.....++.|...|.+. |...+.+.+.+...|..|+.+|.
T Consensus 44 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666553 33334555555555555555554
No 99
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=76.23 E-value=5.7 Score=37.88 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+.|+.-+.-|+.|+.||..|..++...+.++..|..+...|+.++
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555556777777777777777776666666666666666555
No 100
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=76.16 E-value=11 Score=30.57 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 440 LANRQSAARSKERKMRYISELEHKVQTL---QTEATTLSAQL---TLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 440 LkNRESAqRSReRKKqYLeELE~KVq~L---qtENssLs~QL---tlLQre~~sL~tENkELK~RLQa 501 (514)
...-.+-++-|.+=..++.+|..-|=.. ......|..-+ ..|+.+...|..|+..|+.+++.
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555554455566665544321 11222222222 33455555566666666655543
No 101
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=75.73 E-value=3.5 Score=29.80 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.|..||.||+.|-.++..|..++..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3678999999999999988888877654
No 102
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.54 E-value=4.6 Score=38.50 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
|..|..++..|..++.....+++.|+++.+.|..+-..++.++.
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 44455544445555544445555555555555444444444443
No 103
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=75.31 E-value=24 Score=26.55 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..|+..|..+..+...+...+..+...+..+..+.+..+..|..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555555555555555555555433
No 104
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=75.27 E-value=11 Score=29.06 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
+.+|..++..|...|..|...+.....++..|..+...|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446777777777788888777777777777777776665
No 105
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.19 E-value=12 Score=32.74 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
|.-++++|..+.+++.|+.....++..+.+.+..|..+...|+.+|..
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999998864
No 106
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=75.13 E-value=5.4 Score=39.01 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=27.4
Q ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 439 ILANRQSA-ARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 439 iLkNRESA-qRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
-|+|||.. +-+|.||+.-..++.+ |+.+.- -+.++..|++++..+..++.....+|..+
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~k----Lk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~ 157 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIAH----LKYKDP-QSTKIPVLEQELVRAEAESLVAEAQLSNI 157 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCT-TCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH----HhccCC-CCchHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 46777765 6666666654444431 221110 12344444444444444444444444333
No 107
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.08 E-value=4.1 Score=33.18 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 452 RKMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 452 RKKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
+-..||.+|+.+++.|+.|+..|..++...+
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3468999999999999999999988876543
No 108
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=74.93 E-value=32 Score=27.79 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+.-...++.++.+++..+..+..+...+..|++.+..|..+...+..+|...
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666666666666666666666666544
No 109
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=74.93 E-value=15 Score=28.46 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.|.+|..+|++|-.+...|+.++..|+.+......|-..--.||
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777777766666666665555555444444
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.93 E-value=20 Score=30.12 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
+++||.+-..|+.++..|..++..|..-
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444433
No 111
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.87 E-value=11 Score=38.74 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.+.+|+++++.|+.++..|..++..+++++.....+-+.|--+|+.|
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444444444444444444444444444444444444
No 112
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=73.81 E-value=17 Score=30.45 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaL 502 (514)
|..|++++..+..++..|..++..|
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 113
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=73.39 E-value=18 Score=27.20 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
..+...++.+++.++..+..+...+..++..+...+.....+-.+++.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788877888888888888888888888888888888888777764
No 114
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.19 E-value=15 Score=35.47 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQL 508 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQL 508 (514)
.||..|+.+|..|+.++..|..||.+|+.-++.+.--+-+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~v 154 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAEL 154 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988888766554443333
No 115
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.48 E-value=19 Score=31.44 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
-..|.+||.+|..|..||..|..+.+...+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 456788888888888888888777766654
No 116
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.10 E-value=42 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtl 480 (514)
+-.-|..|.++++.|+.+...+..++..
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333333
No 117
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=71.26 E-value=44 Score=29.35 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+++.||.++..|..++..|+.+|-.|||
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666555
No 118
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=71.04 E-value=20 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
|..++..|+..+..|..||..|+.++..|..+
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555556666666666655544
No 119
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=70.77 E-value=5.4 Score=31.42 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.+..|+.+...|..+|.+|+.++..|.+++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666667777777776665543
No 120
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=70.20 E-value=17 Score=31.64 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH----H--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 443 RQSAARSKERKMRYISE----L--EH-KVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 443 RESAqRSReRKKqYLeE----L--E~-KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|-..+..|+.|++||.| | .. ....|+..+.+|+.+|..|+.+.-.|......-...|..|..
T Consensus 16 ~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~ 84 (107)
T 1ytz_T 16 RGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRN 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Confidence 34445566677888876 1 11 233566677777777777777766666555444444444433
No 121
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.14 E-value=17 Score=30.00 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QL 478 (514)
..|.+||.++++.+.++..|..++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555444444
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.16 E-value=25 Score=30.59 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+.....|.+|+.|+.++.+|..++...+.-...|..+|..|+...
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~ 55 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKH 55 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 344556667788888888888777766665556666666665543
No 123
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=69.03 E-value=51 Score=27.72 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 435 RAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 435 R~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.++.+.++|+....--.....-...|+.+=..+-.+.+.+..++..++.+..+|.++..--..+|..|.
T Consensus 26 eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 26 ELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566777777777777777777777777777777777777777777777777777777777766664
No 124
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.69 E-value=28 Score=31.21 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
...|+.++..-+....+|..+|+.|.+++.....|..+|+...+.+.
T Consensus 59 ~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 59 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 34455544444555566666666666666666666666665555543
No 125
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=68.52 E-value=47 Score=34.11 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTL-LQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtl-LQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+++.|+.+.+.++.++.. -..+...|..+-++|+.+|..|+.
T Consensus 42 ~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 42 KRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444331 012334566666666666666554
No 126
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=68.34 E-value=38 Score=26.03 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhc
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ-QAQLRDGI 512 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ-QaQLrDAL 512 (514)
.+..||.++..++.-...+...+..+......+..++...+..+..|++ ..++-.-|
T Consensus 6 ~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~l 63 (66)
T 3m0a_A 6 RCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSI 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Confidence 3455677777777766667777777777777776777777777777777 35554433
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.28 E-value=29 Score=34.95 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 468 qtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
|.|-..+.+..+..+.+...|..||..|+..+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 33333333333344444444444444444443
No 128
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=68.19 E-value=4.8 Score=31.03 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
.||+++...++.|..||..|..++..|+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555444
No 129
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=68.07 E-value=4.4 Score=30.67 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QL 478 (514)
..|+++||.+|..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999888888776654
No 130
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=67.93 E-value=71 Score=30.01 Aligned_cols=85 Identities=11% Similarity=0.108 Sum_probs=45.7
Q ss_pred CccccccCCCCcchHHHhhhcchh--HHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 400 PAFSLEFGNGEFSGAELKKIMANE--KLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQ 477 (514)
Q Consensus 400 ~~~s~efG~g~~s~~E~KKim~~e--kLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~Q 477 (514)
..|-+-.+--..+-.|++.++.++ +|..+.. .-.-++-+...++.. .-..+.+.+|+.+++.+......+..+
T Consensus 27 ~~~~LP~~L~~LS~~eL~~LL~~~~dlL~~~v~-~l~~~q~~~~~~e~l----~s~ae~ll~l~~~Le~~r~~l~~~l~~ 101 (192)
T 2p22_C 27 KNIPLPEGINLLSSKEIIDLIQTHRHQLELYVT-KFNPLTDFAGKIHAF----RDQFKQLEENFEDLHEQKDKVQALLEN 101 (192)
T ss_dssp CCCCCSSGGGSCTTHHHHHHHHHCHHHHHHHGG-GGSCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHhCCHHHHHHHHhChHHHHHHHHH-hchhHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 445555555666778888888875 3443432 111233344444444 223334456666666666666666666
Q ss_pred HHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLT 489 (514)
Q Consensus 478 LtlLQre~~sL~ 489 (514)
+..|+.++....
T Consensus 102 ~~~L~~~~~~k~ 113 (192)
T 2p22_C 102 ARILESKYVASW 113 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665554433
No 131
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.89 E-value=31 Score=29.87 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTL 474 (514)
Q Consensus 460 LE~KVq~LqtENssL 474 (514)
|+.+++.|+..+..|
T Consensus 48 L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 48 LRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 333333333333333
No 132
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.85 E-value=27 Score=28.43 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 448 RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+-|+..+.-|..||.++..++.+......+...|-.-...|..|...++.-|+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777778777777777776666666666666666666666655443
No 133
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=67.67 E-value=21 Score=34.74 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=48.6
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 430 LTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 430 l~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
..+...+|+-|+.|-.+-++ .+..|+++++..+.|+..+.++++..+++.+.+...-..+-.
T Consensus 159 ~asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~ 220 (228)
T 3q0x_A 159 PGNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLL 220 (228)
T ss_dssp ECCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 45778889988888776654 467899999999999999999999888877776665555443
No 134
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=67.26 E-value=31 Score=29.15 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 468 QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 468 qtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
-.||..|..+|..|+.++..|..+|.+|+.-.+
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999988886544
No 135
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.10 E-value=15 Score=37.10 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQ 482 (514)
||..|...+.+...|..++..++
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~ 39 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQ 39 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 136
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.03 E-value=51 Score=34.31 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQR---DSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQr---e~~sL~tENkELK~RLQaLEQQ 505 (514)
|..+++.|+.+.+.++.++..+.. +...|..+-++|+.+|..|+.+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENE 91 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554321 2345566666666666666543
No 137
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=65.76 E-value=58 Score=27.18 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
....+.||.++..++.++..+..++..|++.+..|..+...+.
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433333
No 138
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=65.55 E-value=6 Score=33.01 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
..|+.+|..|..++..|+.||..||.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554
No 139
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=65.36 E-value=7.6 Score=29.81 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+..|+.+...|..||..|+.++..|.+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777888888888877754
No 140
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.32 E-value=16 Score=37.41 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQr 483 (514)
++|+.++..|+.+..+|.++++.++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333
No 141
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=65.31 E-value=11 Score=30.36 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
|..++..|+.+...|..+|..|+.+|++
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555443
No 142
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=65.08 E-value=49 Score=26.01 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tE 491 (514)
+|...|..-..+....+.++..|.+.++.|..|
T Consensus 39 el~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 39 DLSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333333333333333333333333
No 143
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=65.08 E-value=52 Score=28.57 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
..|+..+.+|+..|..|+.+.-.|....
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv 72 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3445555555555555555544444433
No 144
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=65.03 E-value=26 Score=37.21 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQR---DSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQr---e~~sL~tENkELK~RLQaLEQQ 505 (514)
|..+++.|+.+.+.++.++..+.. +...|..|-++|+.+|..|+.+
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544432 2344556666666666655543
No 145
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.84 E-value=50 Score=27.08 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|..||..++.-+.+-..+..++..+...+..-.-|..+|+..|..|
T Consensus 23 v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 23 LSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3344444444444444444555555555555555555555555443
No 146
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=64.70 E-value=40 Score=27.69 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
+|..+|..|..|+..|..++..++++...+..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~e 34 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKE 34 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999999888887764
No 147
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=64.43 E-value=51 Score=27.84 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 010222 491 QNNELKFRLQAM 502 (514)
Q Consensus 491 ENkELK~RLQaL 502 (514)
+...++.+|..|
T Consensus 66 ~i~rhk~~i~~l 77 (84)
T 1gmj_A 66 EIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 333344444444
No 148
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=64.30 E-value=39 Score=29.24 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
..+...+..|.+..+.+..-.-+|..+++.|..+.
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444555555555554443
No 149
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=64.22 E-value=62 Score=26.92 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
.|..||..++.-+.+-..++.++..+...+..-.-|..+|++.|..|
T Consensus 28 ~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 28 QLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34455555555555555566666666666666666667777766654
No 150
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=63.86 E-value=24 Score=29.17 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 482 QRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 482 Qre~~sL~tENkELK~RLQa 501 (514)
+.+...+..+..+|+.+|..
T Consensus 90 e~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 90 ERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 151
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=63.67 E-value=3.7 Score=36.27 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLT 479 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLt 479 (514)
-++||+.+++.|+.||..|+.++.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999986
No 152
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.43 E-value=57 Score=26.26 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..-+.+.|.+...++.+...|..++..|+.++..+.........+|+.-
T Consensus 26 e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 26 EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666777666666666666666665555543
No 153
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=63.42 E-value=18 Score=31.77 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+|..+++.|+.++..|..|..+|+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
No 154
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.93 E-value=12 Score=38.79 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..+|..+++.|+.+...|..+.+.++.+...+..|...++.++..+
T Consensus 44 ~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 44 NSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666666554
No 155
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=62.81 E-value=39 Score=27.75 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tE 491 (514)
|..+|..|..|...|..++..++++...+..|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888877766643
No 156
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.67 E-value=32 Score=30.33 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.....+-..-|.+|+..+..|..++..-+...+....||..|+.+++.++.
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555556666677777777777777666777777788888888877643
No 157
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=62.61 E-value=20 Score=29.57 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
|..|+.+...+..+...|+.+-+.|.++.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777777776554
No 158
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=62.25 E-value=60 Score=34.81 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=42.6
Q ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSK-ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 434 KR~KRiLkNRESAqRSR-eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+-++.+++.|+.-+.-- .+=.+|.++||.++..|+.....-...|..||..+..+..+.+.|..-|
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555443333 3446889999999999987766544777777776666666665555433
No 159
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=62.15 E-value=13 Score=31.15 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaLE 503 (514)
.+.+.|..|+..|+.++.++.
T Consensus 37 ~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444444433
No 160
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=62.09 E-value=6 Score=33.01 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSA 476 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~ 476 (514)
|..|.||+.++.+|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888887764
No 161
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.07 E-value=15 Score=29.95 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.|..+...++.+...|..|+.+|+.+|+.
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555566666666666553
No 162
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=61.99 E-value=15 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..|.++...|..|...||.++.+|.|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444555555666666666666666654
No 163
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=61.26 E-value=74 Score=26.80 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 442 NRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 442 NRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|=+||-.+--|-|+-|. .++...+..|..+..++...+.++..|..|...|+.++..|
T Consensus 14 eLQSALeaEIqAKQ~i~---EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLS---REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666555443 23445555666666677777777777777777777766665
No 164
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=60.77 E-value=53 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|-.++..|..+...|..|+..+++-.+.+
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444443333
No 165
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=60.63 E-value=39 Score=30.03 Aligned_cols=31 Identities=32% Similarity=0.326 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
.+|+.+++.|+.+|..|..++..++.+...|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888877777777776666544
No 166
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=59.36 E-value=77 Score=26.39 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.+.-|+.|-+.-+.|..=-..|...++.|+++...|......|+.+.+.|+.
T Consensus 23 ~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 23 AQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666677777888888888888888888887777754
No 167
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=59.36 E-value=28 Score=26.62 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLS 475 (514)
Q Consensus 464 Vq~LqtENssLs 475 (514)
+..|...|-+|.
T Consensus 12 iarlkkdnlqle 23 (52)
T 3he5_B 12 IARLKKDNLQLE 23 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhhhhhhhh
Confidence 333333333333
No 168
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=59.15 E-value=35 Score=25.72 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
++..|+.+.+.|......||.+||+|
T Consensus 21 elaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666677777777665
No 169
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.07 E-value=48 Score=25.60 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.|+..|..+..+|..++..|+.+...|..+...-|.+.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777787777777777777766665544443
No 170
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.11 E-value=77 Score=26.07 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
.|..+...|+........++..|......|..+..+|..||
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334433333344444444444444444444444433
No 171
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=58.01 E-value=26 Score=33.41 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
.+..|+.+++.|+.+...|..|++.+.
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555444443
No 172
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=57.79 E-value=5.3 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLS 475 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs 475 (514)
..|+++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999998887666553
No 173
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=57.77 E-value=4.9 Score=38.74 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 010222 468 QTEATTLSAQLTLLQR---DSVGLTNQNNELKFRL 499 (514)
Q Consensus 468 qtENssLs~QLtlLQr---e~~sL~tENkELK~RL 499 (514)
..||.+|++|+..|+. ++..|..||..|+.-|
T Consensus 25 ~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 25 YTENQHLKERLEELAQLESEVADLKKENKDLKESL 59 (255)
T ss_dssp -CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444332 2344556666666544
No 174
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.34 E-value=23 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
|...+..++.|+.+..+....|..|+.++
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 175
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=57.31 E-value=14 Score=36.72 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
+.+++.|+.++..|..+++.|+.+...+...|
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n 215 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN 215 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44566666666666666666665555555544
No 176
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.73 E-value=9.1 Score=29.49 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 480 LLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 480 lLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.+..++..|..||.+|+.+++.|+++
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777888888888888877654
No 177
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=56.27 E-value=10 Score=31.26 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++|..++..++..+..|..=+..-+..+..|+.+|+-||..|-.||.
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666677777777777788888899999999999888875
No 178
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=55.76 E-value=1.2e+02 Score=32.06 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLL-----QRDSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlL-----Qre~~sL~tENkELK~RLQaLEQQaQ 507 (514)
+.+.+++..|+.+..+..++...++.. ...+..|......|+.+|+.|+....
T Consensus 135 ~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 135 KQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555554444444322 23445556666777888887776543
No 179
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=55.60 E-value=1e+02 Score=26.55 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
|..|+.....+..++.+|..++..++.
T Consensus 70 l~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 70 LQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555666666666666655543
No 180
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=55.37 E-value=1.1e+02 Score=26.80 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=20.3
Q ss_pred CCcchHHHhhhcchhHHhhhhccChHHHHHHHHhH
Q 010222 409 GEFSGAELKKIMANEKLAEIALTDPKRAKRILANR 443 (514)
Q Consensus 409 g~~s~~E~KKim~~ekLaElAl~DpKR~KRiLkNR 443 (514)
=.|++.+...+.-=-.|.++- ..-+.+|+++...
T Consensus 39 R~Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 39 RKFGAEDLRWILFTRQMRRAG-LSIEALIDYLALF 72 (142)
T ss_dssp BCBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 457777777666545555432 3456677777643
No 181
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=55.25 E-value=53 Score=34.20 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSA---QLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~---QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..+++|..+.+.+.++...+.. +.+.|..+...|..+.++|+.++..++.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555544322 1233444444444555555555544443
No 182
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.80 E-value=80 Score=27.88 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+.-.+.|.-|+++|...+..-..=+.--+.+..+...|..++..|+.+++.|
T Consensus 58 ~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 58 KIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3334578889999998887776666666666777777777777777766543
No 183
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=54.76 E-value=29 Score=35.07 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|+........++..|+..+..+..+..+|+.+|..|+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444443
No 184
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=54.50 E-value=30 Score=28.19 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 475 SAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 475 s~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..++..+..+...|..+...+..++..+
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444433
No 185
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=54.40 E-value=29 Score=34.20 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
-|.|+..|++.|+..-..+..+|+.|+++=..|..+...++.||+.+++
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999887654
No 186
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=54.39 E-value=22 Score=35.73 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QL 478 (514)
+|+++|+.+++.|+++..+|..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477777777777777777776555
No 187
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.87 E-value=57 Score=35.49 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=17.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQR-------DSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 473 sLs~QLtlLQr-------e~~sL~tENkELK~RLQaLEQ 504 (514)
+|+++++.|+. .+..|+.-.++++.+||.||-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544 444555555555566666664
No 188
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=53.75 E-value=42 Score=25.89 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
++..++..|+.+...++..++...++++.|+.-.-.|..+|.+.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatY 47 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATY 47 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555555555555555555665655555555555443
No 189
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.48 E-value=1.2e+02 Score=32.65 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 449 SKERKMRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~LqtENssLs~QL 478 (514)
.+++.++.-+-+|.+-+.++.....|.+++
T Consensus 506 l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 506 LHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555455555555544433
No 190
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=51.91 E-value=65 Score=27.13 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 470 EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 470 ENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
|.+..+..+..++.++......|.+|..+++.|
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444
No 191
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.83 E-value=12 Score=30.08 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 010222 456 YISELEHKVQ 465 (514)
Q Consensus 456 YLeELE~KVq 465 (514)
||..|+.+++
T Consensus 58 YI~~L~~~~~ 67 (80)
T 1hlo_A 58 YIQYMRRKNH 67 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 192
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=51.07 E-value=48 Score=28.23 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre 484 (514)
+.|+..++.|+.....+..+++.++..
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~ 124 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQ 124 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444443
No 193
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=51.07 E-value=19 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010222 485 SVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 485 ~~sL~tENkELK~RLQaL 502 (514)
+..|.+||++||.+++.|
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666655
No 194
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=50.83 E-value=1.1e+02 Score=32.30 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 480 LLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 480 lLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.|..+...|..+.++|..++..+++
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~ 144 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEE 144 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 195
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=50.81 E-value=48 Score=31.99 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++|+.+.-....+...|+..+..|.+|+..|+.+|+.|+.
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 3344444444455555666677788899999999888863
No 196
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=50.68 E-value=99 Score=28.48 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=6.4
Q ss_pred hHHHHHHHHhHHHH
Q 010222 433 PKRAKRILANRQSA 446 (514)
Q Consensus 433 pKR~KRiLkNRESA 446 (514)
-+-++..++.|+..
T Consensus 143 ~~~i~~~ikKR~~k 156 (251)
T 2fic_A 143 FPDIKSRIAKRGRK 156 (251)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444443
No 197
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=50.36 E-value=72 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
+|+.++..|+.+|..|...+..|..++..+..+..++
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555554444433
No 198
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.30 E-value=26 Score=30.34 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
-+..|..+|..|+.|+..|..++..|+-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666665555555443
No 199
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.16 E-value=77 Score=32.55 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTE 470 (514)
Q Consensus 456 YLeELE~KVq~LqtE 470 (514)
.+++|..+.+.+.++
T Consensus 43 ~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 43 RLQEVQTERNQVAKR 57 (421)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 200
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=49.93 E-value=96 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlL 481 (514)
.+|+.+...|+.+...+..+...|
T Consensus 60 ~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 60 QALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 201
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=49.44 E-value=0.2 Score=42.85 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=26.7
Q ss_pred hhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHH
Q 010222 417 KKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMR 455 (514)
Q Consensus 417 KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKq 455 (514)
+..++.-.|.+-.+.--+.+||.-+||++||++|.||..
T Consensus 49 n~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 49 NEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcc
Confidence 333333334433344468889999999999999999864
No 202
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=49.44 E-value=1.1e+02 Score=25.35 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHH-HHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLL--Q-RDSVGLTNQNNELKFRLQA-MEQQA 506 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlL--Q-re~~sL~tENkELK~RLQa-LEQQa 506 (514)
+.|++.|.+.|..+...+.-...|.-++..+ - .....+.+..+.+|..|.. |..+.
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666655555555555555 1 2345666666666666666 65443
No 203
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.89 E-value=54 Score=34.15 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
++..++..++..|++.......++..|+..+..+..+..+|+.+|..|+.
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555665555555555555555555543
No 204
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=48.78 E-value=33 Score=35.21 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQ---RDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQ---re~~sL~tENkELK~RLQaLEQ 504 (514)
|..+++.|+.+.+.++.++..+. .+...|..+-++|+.+|..|+.
T Consensus 42 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 89 (425)
T 2dq3_A 42 IIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEE 89 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555554444321 1122334444455555544443
No 205
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=48.52 E-value=1.5e+02 Score=26.63 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=37.3
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 432 DPKRAKRILANRQSAARSKERKM---------------RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 432 DpKR~KRiLkNRESAqRSReRKK---------------qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
+-.|.++.|-||.-+---|..-. +-.++..+++..++.+......++...+..+..|..+.+.+-
T Consensus 35 E~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~ 114 (147)
T 2b9c_A 35 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVT 114 (147)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577778888887666554322 112334444444444444444444444455555555544444
Q ss_pred HHHHHHH
Q 010222 497 FRLQAME 503 (514)
Q Consensus 497 ~RLQaLE 503 (514)
..|..|+
T Consensus 115 ~nlKsLE 121 (147)
T 2b9c_A 115 NNLKSLE 121 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHhhH
Confidence 4444443
No 206
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=48.19 E-value=80 Score=26.56 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQ-RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQ-re~~sL~tENkELK~RLQaLEQQa 506 (514)
+.|++.|.+.|..+.+.+.-...|.-++..+. .....+....+.+|..|..|..+.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666777777777766666666555555442 335567778888888888776553
No 207
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=47.04 E-value=78 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 492 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tEN 492 (514)
.|+++++.|+.....|..++..++.+...+..+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555554444444443333
No 208
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=46.94 E-value=1e+02 Score=25.04 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
.+++...+..|+.+...++.+++...++++.|+.-.-.|..+|.+..
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888777777778888777777777776554
No 209
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=46.79 E-value=1.4e+02 Score=25.68 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=40.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 010222 440 LANRQSAARSKERKMRYISELEHKVQTLQ---TEATTLSAQLTLLQRDS-------VGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 440 LkNRESAqRSReRKKqYLeELE~KVq~Lq---tENssLs~QLtlLQre~-------~sL~tENkELK~RLQaLEQ 504 (514)
..|-.+|-..=..|+..|++|-..+..++ ..+.-|..|+.....+. ..+..|..+|..+|..|..
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555666666667777788777777766 45555777777765444 3445555566666655543
No 210
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=46.50 E-value=83 Score=28.98 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDGI 512 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQQaQLrDAL 512 (514)
...+..+++.|..++.+|...++.|+.+.|+-+|.
T Consensus 82 kk~~ea~la~l~~~~~~LeAE~aKLeEekQIseAS 116 (146)
T 2xnx_M 82 LGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDAS 116 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHH
Confidence 33455566667777777888888888888887764
No 211
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=46.49 E-value=45 Score=30.93 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=0.0
Q ss_pred cccccchhhh
Q 010222 355 RHYRSVSMDS 364 (514)
Q Consensus 355 rH~RS~SmDs 364 (514)
.|.+|.-+|-
T Consensus 4 ~~~~~~~~~~ 13 (175)
T 3lay_A 4 HHHHSSGVDL 13 (175)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3555555554
No 212
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=46.24 E-value=57 Score=34.58 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 010222 492 NNELKFRLQAMEQ 504 (514)
Q Consensus 492 NkELK~RLQaLEQ 504 (514)
-++|+.+|..|+.
T Consensus 113 ~~~l~~~i~~le~ 125 (484)
T 3lss_A 113 SKDLSDQVAGLAK 125 (484)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544443
No 213
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.12 E-value=75 Score=25.89 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATT------LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 455 qYLeELE~KVq~LqtENss------Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..|+.||.++..|+.+... =..++..|..++..+..+..++-.|=..|+..
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999988764 13577778888888888888888887777653
No 214
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=45.03 E-value=45 Score=34.22 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATT 473 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENss 473 (514)
-+..+++|..+.+.+.++...
T Consensus 42 ~~~~~~~l~~~~n~~sk~i~~ 62 (425)
T 2dq3_A 42 IIKRLEALRSERNKLSKEIGK 62 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666655555543
No 215
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=44.95 E-value=1.5e+02 Score=25.53 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+..||.++...+.|...|..+++.-+........++..|...|+.|
T Consensus 14 l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 14 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555554444444444444444444444444333
No 216
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=44.67 E-value=45 Score=27.55 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
-|.|+..|++.|..--..+..+++.++++-..|..+..+++.||+.++
T Consensus 22 EI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888888888888888887776654
No 217
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.53 E-value=74 Score=33.79 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSA---QLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~---QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
..+++|..+.+.+.++...+.. ..+.|..+...|..+.++|..++..++.+
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544432 13344445555555555555555555443
No 218
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=44.32 E-value=1.4e+02 Score=25.75 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 445 SAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (514)
Q Consensus 445 SAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~s 487 (514)
+-+-||+-=.++-.+||.-+..|+.||..=...+..++..+..
T Consensus 15 ~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 15 SEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666656666778888888888887777777776655544
No 219
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=44.03 E-value=1.1e+02 Score=23.58 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+..|..||..+..++.+......+...|-.-...|..|...++.=|+
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 45678899999999999988888888888888899999888886654
No 220
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=43.99 E-value=30 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 479 TLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 479 tlLQre~~sL~tENkELK~RLQaL 502 (514)
..|+.....|..+|.+|+.++..|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344445555555555555555544
No 221
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.46 E-value=30 Score=24.12 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQ 482 (514)
+.|..-+..|+.||.+|+++++.|-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777776654
No 222
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.03 E-value=27 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQ 482 (514)
Q Consensus 467 LqtENssLs~QLtlLQ 482 (514)
|...|..|++++..|+
T Consensus 5 lkqknarlkqeiaale 20 (28)
T 3ra3_B 5 LKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3344444444444433
No 223
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.96 E-value=36 Score=24.58 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 463 KVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 463 KVq~LqtENssLs~QLtlLQre~ 485 (514)
|....+.+..+|++|...|+.+.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 224
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.71 E-value=89 Score=25.63 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|..++..++.....|..+...|..++..++
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555554443
No 225
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=41.32 E-value=65 Score=30.94 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
++=.|.+++.|+.+|..|..+++.|. ....+|..+-.++..+
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l 108 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRL 108 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 45566667777777777777776553 2344555555555444
No 226
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.20 E-value=70 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
|.+++..+-++++....+..+|+.++..|+..
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555555555555543
No 227
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=40.91 E-value=34 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+..|+.+.....+||-+|.+.+..||-
T Consensus 3 vaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345566666667777777777766653
No 228
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=40.56 E-value=3e+02 Score=29.72 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtl 480 (514)
+.+-|+.+--+.|+..=++| +.++..+-..++.||..++++.+.
T Consensus 16 ~elarvqkana~aka~Ye~~---~ae~~a~n~~i~aeNeaikkrNa~ 59 (497)
T 3iox_A 16 TELARVQKANADAKAAYEAA---VAANNAANAALTAENTAIKKRNAD 59 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHH
Confidence 44445544333333222222 333444444444444444444333
No 229
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.45 E-value=48 Score=34.23 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK 496 (514)
..||++++.|+.|+..|..++..++++...+..|.+.|+
T Consensus 52 k~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 52 KKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555566666555555555555554443
No 230
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=40.20 E-value=22 Score=31.19 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
++|..+|+.|+.|+..|..++..|+.+....
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777777777777666666655443
No 231
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.13 E-value=15 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 478 LTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 478 LtlLQre~~sL~tENkELK~RLQ 500 (514)
++.|..+++.|..||+.||.+|.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777778889999998886
No 232
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.11 E-value=38 Score=26.21 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
-..||.-|..|+..|..|...+..|+.+...|+.
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3457777777888888777777777776666653
No 233
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=39.59 E-value=75 Score=22.78 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 472 TTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 472 ssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..|.+++..|.++.-+|+-....||+++.+|
T Consensus 4 salkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 4 SALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666667777777788888888887766
No 234
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.43 E-value=1.8e+02 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
+|..+..|.+......-.-..|+.++..|..|..-||.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333455555555555555543
No 235
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.41 E-value=60 Score=23.70 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlL 481 (514)
+.+|+....+|..+...|
T Consensus 3 MnQLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 334444444333333333
No 236
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=39.33 E-value=2.5e+02 Score=26.35 Aligned_cols=79 Identities=13% Similarity=0.197 Sum_probs=45.8
Q ss_pred hhHHhhhhc----cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 010222 422 NEKLAEIAL----TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL----------QRDSVG 487 (514)
Q Consensus 422 ~ekLaElAl----~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlL----------Qre~~s 487 (514)
..+|++|-. .|-+.+-|+|++.... -++|.+|+..+-..+..++....-|.+.|..+ ..-+..
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~---d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~e 111 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQE---DQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKE 111 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHH
Confidence 346666653 3567888888887764 35556666666666666666555555555542 123344
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 488 LTNQNNELKFRLQAME 503 (514)
Q Consensus 488 L~tENkELK~RLQaLE 503 (514)
|...-+.++.+|+.|-
T Consensus 112 L~~~Ck~~qp~i~~Li 127 (186)
T 1oxz_A 112 LYQRCERMRPTLFRLA 127 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555443
No 237
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=39.29 E-value=47 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaL 502 (514)
..+..|......|..+|++|
T Consensus 8 kkcaalesklqalekkleal 27 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444
No 238
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=39.18 E-value=74 Score=29.50 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 010222 486 VGLTNQNNELKFRL 499 (514)
Q Consensus 486 ~sL~tENkELK~RL 499 (514)
..|..|..+|+.++
T Consensus 116 ~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 116 NAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.92 E-value=3.5e+02 Score=29.56 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=21.6
Q ss_pred hHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 010222 433 PKRAKRILANRQSAARSKER---KMRYISELEHKVQTLQTEATT 473 (514)
Q Consensus 433 pKR~KRiLkNRESAqRSReR---KKqYLeELE~KVq~LqtENss 473 (514)
+.++..++ .+++++.|.+ +-..+++|++++..|+.|...
T Consensus 378 p~kai~ll--dea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~ 419 (854)
T 1qvr_A 378 PDKAIDLI--DEAAARLRMALESAPEEIDALERKKLQLEIEREA 419 (854)
T ss_dssp HHHHHHHH--HHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Confidence 44555544 2444444443 455677777777766665433
No 240
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.61 E-value=43 Score=27.16 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
..|...|.+||..+..-..|+.+|+.++..++.
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999998888888888887766654
No 241
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.43 E-value=16 Score=28.22 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 469 TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 469 tENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.||..|..-+..|+.++..|+....-|...+..||..
T Consensus 17 kenaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 5677777777777777777777777777777776654
No 242
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=38.37 E-value=2.2e+02 Score=26.04 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 490 NQNNELKFRLQAMEQ 504 (514)
Q Consensus 490 tENkELK~RLQaLEQ 504 (514)
.|..++..+...|.+
T Consensus 84 ~ek~~r~e~k~~l~~ 98 (150)
T 4dci_A 84 GKRSELEEQKRNLLQ 98 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 243
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=38.29 E-value=2e+02 Score=25.15 Aligned_cols=68 Identities=9% Similarity=0.195 Sum_probs=32.9
Q ss_pred HHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKER---KMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 437 KRiLkNRESAqRSReR---KKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+|+-+|+++-+.--.+ -.+.+.+-+.++...+.+..+-..++..+..+...|...|..|.-++..+..
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5667777775521111 1122333344444444444444445555555555555555555555544433
No 244
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=38.18 E-value=1.8e+02 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
+-|.+|--+|..|+.|-.+...++.....++..|..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~ 61 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQE 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445556666666666666555555544444443333
No 245
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.07 E-value=83 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
++++|+.+++.|+.....|...+...+...
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666665555433
No 246
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=37.95 E-value=1.7e+02 Score=25.57 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQ 482 (514)
+..|..+..+|+.++..|+
T Consensus 20 i~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 247
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.76 E-value=2e+02 Score=31.22 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATT 473 (514)
Q Consensus 457 LeELE~KVq~LqtENss 473 (514)
++..|++++.++.|...
T Consensus 316 ~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 316 VEAAERNYERARAELNQ 332 (551)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 248
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.59 E-value=2e+02 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQR-------DSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQr-------e~~sL~tENkELK~RLQaLEQQ 505 (514)
.+.|.++..|......|..++..++. .+..|..+.+.|...++.|+.+
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444 4444444444444444444443
No 249
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=37.52 E-value=15 Score=35.41 Aligned_cols=6 Identities=17% Similarity=0.750 Sum_probs=2.4
Q ss_pred Hhhhhc
Q 010222 507 QLRDGI 512 (514)
Q Consensus 507 QLrDAL 512 (514)
+|++.|
T Consensus 54 rLr~lL 59 (255)
T 2j5u_A 54 DLKESL 59 (255)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 344433
No 250
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=37.48 E-value=64 Score=22.76 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELK 496 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK 496 (514)
|++++..|..+...|.-|...||
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444
No 251
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=37.27 E-value=1.6e+02 Score=29.05 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.++-|+.+......|..+|-.+|+.|+.
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~~ 191 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLRQ 191 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666543
No 252
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=37.22 E-value=91 Score=26.34 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTL-----LQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtl-----LQre~~sL~tENkELK~RLQaL 502 (514)
.+..|+.++..|+.+...+..++.. .-.++..+..+-++||---|.|
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L 60 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGM 60 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3445555555555555555443221 1245666677777777554443
No 253
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=37.13 E-value=42 Score=24.52 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010222 466 TLQTEATTLS 475 (514)
Q Consensus 466 ~LqtENssLs 475 (514)
+|+.+...|.
T Consensus 5 QLE~kVEeLl 14 (36)
T 1kd8_A 5 QLEAEVEEIE 14 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 254
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=37.04 E-value=17 Score=36.73 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKF 497 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~ 497 (514)
|..||.+|..++++...|...+..++.++..|.....+|+.
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554444444444444433
No 255
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.00 E-value=38 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 480 LLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 480 lLQre~~sL~tENkELK~RLQaL 502 (514)
.|+.....|..+|.+|..++..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444455555555555555444
No 256
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=36.67 E-value=1.4e+02 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|-.++..++.++..|..++...+.+...+.+...+.+.++..++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555556666666666555555555555555555554443
No 257
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=36.62 E-value=18 Score=32.78 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEAT 472 (514)
Q Consensus 459 ELE~KVq~LqtENs 472 (514)
.||.++..++.|..
T Consensus 34 ~~e~~~~~~~~Ele 47 (130)
T 3cl3_D 34 AASEQARQLESERE 47 (130)
T ss_dssp --------------
T ss_pred HHHHHHHHhHHHHH
Confidence 34444444444333
No 258
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.41 E-value=1.8e+02 Score=23.82 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.+.++...+..|+.+...++..++...++++.|+.-.-.|...|.+
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444455555555555555555555555555555555555555544
No 259
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.25 E-value=79 Score=29.86 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=0.4
Q ss_pred CCCCCCCccCC
Q 010222 179 GESLPPRNKHR 189 (514)
Q Consensus 179 ~~~LpPrk~HR 189 (514)
..+|-||.+|.
T Consensus 11 ~~~~~~~~~~m 21 (184)
T 3w03_C 11 SSGLVPRGSHM 21 (184)
T ss_dssp ----------C
T ss_pred ccCcccCCCcc
Confidence 45677777653
No 260
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.71 E-value=1.6e+02 Score=26.70 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
+|+..|+.+++.-.+-...|..-....+..+...+...+++|.++..+
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv 133 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARV 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333344433434444444445555555555443
No 261
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=35.50 E-value=56 Score=28.67 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=7.7
Q ss_pred CccccccCCCCc
Q 010222 400 PAFSLEFGNGEF 411 (514)
Q Consensus 400 ~~~s~efG~g~~ 411 (514)
+.+-+.+|.|-|
T Consensus 80 ~~V~v~lG~g~~ 91 (151)
T 2zdi_C 80 NNAIVSVGSGYA 91 (151)
T ss_dssp TEEEEEEETTEE
T ss_pred CEEEEEeCCCeE
Confidence 346677787755
No 262
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.27 E-value=25 Score=36.50 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
|+.|...|..++..++.++..+..+.++++.++.
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444444433
No 263
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=35.15 E-value=3.3e+02 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 462 HKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 462 ~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
++.+.+..|...|...+...+.++..|+.....++.+|+.|++++
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445555555555555555566666666666666666666543
No 264
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.00 E-value=1e+02 Score=23.07 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQT 469 (514)
Q Consensus 454 KqYLeELE~KVq~Lqt 469 (514)
+.||++||.+-..|..
T Consensus 9 knyiqeleernaelkn 24 (46)
T 3he4_B 9 KNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHh
Confidence 4566666665544443
No 265
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=34.86 E-value=59 Score=26.24 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRD 510 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLrD 510 (514)
+..|..+...|..++..|........ +...|..+.-.||.+|..+-.+..-..
T Consensus 19 f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~~~ 71 (76)
T 1zhc_A 19 FDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYREKQ 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34444555555555555444333233 556666667777777766655544433
No 266
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.83 E-value=1.3e+02 Score=24.65 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 473 TLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 473 sLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
.+..++..++.++..|..+..+|+.+++.|+.+
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444
No 267
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=34.82 E-value=1.6e+02 Score=22.95 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 483 RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 483 re~~sL~tENkELK~RLQaLEQQa 506 (514)
.+......|..+|+.+|+.|+-+.
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666676666665543
No 268
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.75 E-value=3.3e+02 Score=29.29 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=6.6
Q ss_pred cchhhHHHHHHhcc
Q 010222 260 EGEVVDDLFSAYMN 273 (514)
Q Consensus 260 ~~e~~ddlf~~Ymn 273 (514)
.+..+-.++..|++
T Consensus 289 tG~~L~~l~~~yv~ 302 (592)
T 1f5n_A 289 NGPRLESLVLTYVN 302 (592)
T ss_dssp BHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 33444455555543
No 269
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.52 E-value=43 Score=23.69 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 487 GLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 487 sL~tENkELK~RLQaLEQQaQ 507 (514)
.|.+-..+|.+|+..||..+|
T Consensus 10 ~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 10 NLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344444455555554443
No 270
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=34.44 E-value=1.9e+02 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 486 VGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 486 ~sL~tENkELK~RLQaLEQQaQLr 509 (514)
..+..|..+|+.+|..|+.+..|+
T Consensus 97 ~~a~~e~~~l~~~l~~le~~~ll~ 120 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQLEFRRMFS 120 (365)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 345667778888888887655443
No 271
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=34.25 E-value=96 Score=25.10 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlL 481 (514)
..|+.+++.++.+...|..++..+
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333
No 272
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=34.23 E-value=1.9e+02 Score=23.84 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
||-.+|..-+.|...|..-+..|+..+.....-|+.|..++
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~ 47 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQN 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333344443333
No 273
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.89 E-value=2.8e+02 Score=25.47 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSA--------QLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 461 E~KVq~LqtENssLs~--------QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|.....++.|...|.+ .+...+.+...+...|..|+.+|..-+
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555443 233445666666666777776665443
No 274
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.34 E-value=28 Score=33.66 Aligned_cols=30 Identities=10% Similarity=0.030 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
.+..++.|+.+.+.++.+...|..++...+
T Consensus 153 ~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 153 SADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444455555555555555555554444
No 275
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.12 E-value=2.3e+02 Score=24.75 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QL 478 (514)
.+.+|..+|+.|++|..-...+|
T Consensus 26 ei~eLk~~ve~lEkERDFYF~KL 48 (106)
T 4e61_A 26 EIEQYKGTVSTLEIEREFYFNKL 48 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444443
No 276
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.83 E-value=1.4e+02 Score=27.60 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 481 LQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 481 LQre~~sL~tENkELK~RLQaLE 503 (514)
.......|..||..+++||+-.+
T Consensus 138 ~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 138 NMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHhHHHHHHHHH
Confidence 33455678888888888887654
No 277
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.79 E-value=4.7e+02 Score=27.77 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
....|..|+..+..|..+...|+..+..+.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666655443
No 278
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.79 E-value=82 Score=29.77 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=4.4
Q ss_pred cChHHHHH
Q 010222 431 TDPKRAKR 438 (514)
Q Consensus 431 ~DpKR~KR 438 (514)
.|+..+-|
T Consensus 137 ~~p~e~i~ 144 (184)
T 3w03_C 137 ENPAEVIR 144 (184)
T ss_dssp SCHHHHHH
T ss_pred CChHHHHH
Confidence 35665555
No 279
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.53 E-value=46 Score=34.38 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQ 482 (514)
++.|.++|.+++.++.....|..+...|.
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~ 52 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALN 52 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666665555555544444333
No 280
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.39 E-value=2e+02 Score=27.84 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
+.+|+.+++.|+.+...+..++..+..+
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444
No 281
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.18 E-value=1.4e+02 Score=25.46 Aligned_cols=45 Identities=11% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLT----NQNNELKFRLQAM 502 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~----tENkELK~RLQaL 502 (514)
++.|.||..--.|...++..|-.|+..+..++ .|...||.+|+..
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777777766777777777777776665554 3555566655543
No 282
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=32.15 E-value=2.1e+02 Score=25.43 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 449 SKERKMRYISELEHKVQTLQTEATTLSAQLT 479 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~LqtENssLs~QLt 479 (514)
--++|++-..|+|++++++..+...+..+++
T Consensus 55 HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 55 FEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888999998888887777665554
No 283
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.97 E-value=1.3e+02 Score=23.58 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
++.|..+-..|..|...-+.++..|+.+...|
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 34444444444444444444444444444333
No 284
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=31.62 E-value=2e+02 Score=28.11 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
|.+|..-+...+.-...|..++..+...+.+...|+.+++.|+..
T Consensus 90 ~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~ 134 (242)
T 3c9i_A 90 RIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGR 134 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhccc
Confidence 333333333333333333344444444444444455555544443
No 285
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=31.57 E-value=1e+02 Score=26.24 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=29.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQ-TLQTEATTLSAQLTLLQR--DSVGLTNQNNELKFRLQAMEQQAQ 507 (514)
Q Consensus 458 eELE~KVq-~LqtENssLs~QLtlLQr--e~~sL~tENkELK~RLQaLEQQaQ 507 (514)
.+|..+|+ .|+.....|..++..|.. +...|+.+-.+|...++.+..+..
T Consensus 36 ~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 36 KELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555 555555555555554333 566667777777777766655443
No 286
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=31.45 E-value=1.3e+02 Score=27.65 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=30.5
Q ss_pred cchHHHhhhcchhHHhhhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 411 FSGAELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 411 ~s~~E~KKim~~ekLaElAl~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
|++++..++.-=-.|.++- .--+.+|+++.++ . . ...+-|+.+.+.|+.+...|...+..|+.
T Consensus 45 y~~~~~~~l~~i~~l~~~g-~~l~~i~~~~~~~-~-~-------~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 45 YTDSQLIHLDLIKSLKYIG-TPLEEMKKAQDLE-M-E-------ELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp EETGGGGHHHHHHHHHHTT-CCHHHHHHHTTSC-H-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHhC-h-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444333444432 3456677777765 1 1 12334455555555444444444444433
No 287
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=31.04 E-value=97 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDS 485 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~ 485 (514)
.+.+.++|.+.+.|+..|..|..++.+|+.+.
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35567889999999999999999998887654
No 288
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.98 E-value=98 Score=30.05 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010222 482 QRDSVGLTNQNNELKFR 498 (514)
Q Consensus 482 Qre~~sL~tENkELK~R 498 (514)
.++...|..+..+|+.+
T Consensus 112 ~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 112 GKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 33333333344444444
No 289
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=30.95 E-value=1.3e+02 Score=31.52 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
..+++-+.....+|..|+..+........+|+..+..|+.
T Consensus 94 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 94 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666666666666666777777776654
No 290
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.89 E-value=2.2e+02 Score=23.25 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
..-+..|..||.++..++.+......+...|-.-...|..|...++.=|+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 44566778888888888888888888888888888888888888877665
No 291
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=30.36 E-value=68 Score=23.31 Aligned_cols=15 Identities=33% Similarity=0.113 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 485 SVGLTNQNNELKFRL 499 (514)
Q Consensus 485 ~~sL~tENkELK~RL 499 (514)
...|..+|+.|..+|
T Consensus 22 VR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 22 VRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 292
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=30.27 E-value=2e+02 Score=23.29 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
...+.++..++..|+.+...++..++...++++.|+.-.-.|...|.+.
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3345666666667777777777777666666777766666666666544
No 293
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=30.26 E-value=2.2e+02 Score=24.42 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..+||.++..|+.|...|. .++.....|..+-.-|..+|+..
T Consensus 49 ~~eL~~EI~~L~~eI~~LE----~iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLE----KMQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455555555555554432 22333333444444444444443
No 294
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=30.20 E-value=0.6 Score=40.79 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 448 RSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
|-|.|-+.|-..=-.+- + .+...|..++..|+.+...|..||.+|+..++.|.
T Consensus 40 RR~lKNR~yAq~CR~rk--~-~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 40 RRTLKNRGYAASCRVKR--V-TQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHhhhhHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455544333222 2 25666777777888888888889999988877654
No 295
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=30.00 E-value=2.5e+02 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQ 482 (514)
.|+.+++.|+.+...|..++..+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444444443
No 296
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=29.42 E-value=20 Score=31.10 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFR 498 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~R 498 (514)
.+||..|+.+++.|+.+... +..|+..+..|.....+|..+
T Consensus 73 ieYIk~Lq~~~~~l~~~~~~----~~~l~~~n~~L~~riqeLE~~ 113 (118)
T 4ati_A 73 VDYIRKLQREQQRAKDLENR----QKKLEHANRHLLLRVQELEMQ 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666544222 223344444444444444443
No 297
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.38 E-value=3.2e+02 Score=24.70 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
+.|+++.+--+.=.+...-|+.-+..|+.|...-..=++.|+.-.........+.+.+++
T Consensus 65 kDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~le 124 (152)
T 4fla_A 65 TDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLE 124 (152)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333334444444444444444444333333333333333334444444443
No 298
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.21 E-value=2.8e+02 Score=29.93 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQ 482 (514)
|.+|...+++|..+.++.+.++
T Consensus 33 e~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 33 EAAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3333333333333333333333
No 299
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=29.17 E-value=2.2e+02 Score=26.45 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.7
Q ss_pred cchHHHhhhcchhHHhhhhccChH
Q 010222 411 FSGAELKKIMANEKLAEIALTDPK 434 (514)
Q Consensus 411 ~s~~E~KKim~~ekLaElAl~DpK 434 (514)
.+++|.++.+. .+.+++..|.+
T Consensus 116 Ls~eei~~~~~--~~~~~~~~D~~ 137 (227)
T 1u00_A 116 LTDSEIASMIK--DSMSYAEQDVK 137 (227)
T ss_dssp CCHHHHHHHHH--HHHHTHHHHHH
T ss_pred CCHHHHHHHHH--HHHhhhcccHH
Confidence 67888888664 33344444433
No 300
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.01 E-value=2.6e+02 Score=29.63 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 485 SVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 485 ~~sL~tENkELK~RLQaLEQQ 505 (514)
...|..+.++|+.++..++.+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~ 133 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 301
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=29.00 E-value=70 Score=22.58 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 481 LQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 481 LQre~~sL~tENkELK~RLQaLE 503 (514)
|....+.|.+.|-..|+++|+|+
T Consensus 6 lkkrvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444455555666666666554
No 302
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.88 E-value=1e+02 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGL 488 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL 488 (514)
..+||.++.+++.|.......+...++....|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 368 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRL 368 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46777777777777766655555444333333
No 303
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.67 E-value=2.4e+02 Score=23.05 Aligned_cols=9 Identities=22% Similarity=-0.075 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 010222 491 QNNELKFRL 499 (514)
Q Consensus 491 ENkELK~RL 499 (514)
+...|+.++
T Consensus 79 ~i~~l~~~i 87 (112)
T 1l8d_A 79 TLAKLIDRK 87 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 304
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=28.62 E-value=2.2e+02 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTN-------QNNELKFRLQAM 502 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~t-------ENkELK~RLQaL 502 (514)
..|+.-+.+|+.+|..|+.+.-.|.. |.++|+.++..|
T Consensus 61 ~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 44555566666666666655544443 344555555544
No 305
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=28.50 E-value=1.9e+02 Score=25.99 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 010222 449 SKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD-------SVGLTNQNNELKFRLQAMEQQAQLRDGII 513 (514)
Q Consensus 449 SReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre-------~~sL~tENkELK~RLQaLEQQaQLrDAL~ 513 (514)
.++-+..-|.+|..+|..|+.+...|..++..++.. ...|.+....-+..|. ..|+-|..||+
T Consensus 55 ~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEle--Ktqa~Ld~aln 124 (125)
T 2pms_C 55 AKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELE--KTEADLKKAVN 124 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 344444556778888888888888888877765431 2333333222333332 23666776664
No 306
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.48 E-value=42 Score=35.90 Aligned_cols=7 Identities=29% Similarity=0.520 Sum_probs=2.7
Q ss_pred cccCCCC
Q 010222 123 FSLDSLP 129 (514)
Q Consensus 123 fs~dslp 129 (514)
|-.-..|
T Consensus 80 FRvkfy~ 86 (575)
T 2i1j_A 80 FRAKFYP 86 (575)
T ss_dssp EEESSCC
T ss_pred EEEEEcC
Confidence 3333343
No 307
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=28.39 E-value=2.5e+02 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 477 QLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 477 QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
+|-.+-+++...-.+..+++.+|..|+
T Consensus 39 ~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 39 RIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666677777888877776
No 308
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=28.25 E-value=1.6e+02 Score=22.67 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QL 478 (514)
.||...+++|. .|+.+.+.|+.|+
T Consensus 6 rrr~e~ld~l~----~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEML----DLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45566665553 3445555555544
No 309
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.88 E-value=2.4e+02 Score=22.79 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+..|..||..+..++.+......+...|-.-...|..|...++.=|
T Consensus 32 q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 32 QDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666655444
No 310
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=27.77 E-value=3.1e+02 Score=23.95 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=36.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 434 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQT---EATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 434 KR~KRiLkNRESAqRSReRKKqYLeELE~KVq~Lqt---ENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQa 506 (514)
.-+||+++--.+-.+--.. .+.+|+.++. +...|+.|...|+.-..++-.=.+.|..-+..|++..
T Consensus 15 g~vkRL~KE~~~Y~kE~~~-------q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l 83 (116)
T 3mxz_A 15 STCKRIVKELHSYEKEVER-------EAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTL 83 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3457776665544433332 3344444443 3456777777777766666666666665555555433
No 311
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.67 E-value=73 Score=22.52 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQr 483 (514)
.||..|..|++-..+|..++..|+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666655544
No 312
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.64 E-value=2.5e+02 Score=22.99 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLR 509 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQaQLr 509 (514)
-++++..|.+.-......+...+..|.+....+.....+|..+++.|..+..+-
T Consensus 29 ~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 29 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455666666677777777777778888888877665543
No 313
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.21 E-value=63 Score=32.04 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
+.++.|+.+.+.|+.|..+|..+...+..
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45666666666666666666555554443
No 314
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.12 E-value=1.4e+02 Score=26.07 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlL 481 (514)
|+..++.|+.....+..+++.+
T Consensus 110 l~~~l~~l~~~l~~l~~~i~~~ 131 (151)
T 2zdi_C 110 YDEAIKKTQGALAELEKRIGEV 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 315
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.99 E-value=1.8e+02 Score=27.22 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=9.3
Q ss_pred hhhccChHHHHHHHHhHHH
Q 010222 427 EIALTDPKRAKRILANRQS 445 (514)
Q Consensus 427 ElAl~DpKR~KRiLkNRES 445 (514)
+++..|.++++-.+-.+++
T Consensus 23 ~l~~~~~~~~~e~l~~~q~ 41 (174)
T 2p22_A 23 ELYREDVDYVADKILTRQT 41 (174)
T ss_dssp HHHHHHHHHHHHHTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444
No 316
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=26.87 E-value=1.1e+02 Score=25.57 Aligned_cols=50 Identities=32% Similarity=0.396 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhc
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ---QAQLRDGI 512 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ---QaQLrDAL 512 (514)
.+.+|..+|..|+.|..+- +..|++...|. ..|..+|+.++| +.++|..|
T Consensus 13 ~~~e~k~kv~~LQ~eLdts----E~VQrDFVkLS---QsLQvqLE~IRqadt~~qvr~Il 65 (79)
T 1tu3_F 13 LMFEEKNKAQRLQTELDVS----EQVQRDFVKLS---QTLQVQLERIRQADSLERIRAIL 65 (79)
T ss_dssp --------CHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHTCCSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444445555555444332 22344443333 256666666654 34455444
No 317
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=26.41 E-value=3.7e+02 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=13.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 437 KRILANRQSAARSKERKMRYISELEHKVQTLQT 469 (514)
Q Consensus 437 KRiLkNRESAqRSReRKKqYLeELE~KVq~Lqt 469 (514)
+++++.|....+....+.+.++.|+.++..+..
T Consensus 189 ~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~ 221 (517)
T 4ad8_A 189 REAVSRLERLQASQRERARQIDLLAFQVQEISE 221 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 333444433333333333444445555554444
No 318
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=26.35 E-value=1e+02 Score=24.84 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSA-----QLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~-----QLtlLQre~~sL~tENkELK~RLQ 500 (514)
.|-.++..|..|...++. +-+.|++++..|..|...|+..|+
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~ 56 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQ 56 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555556555443 445566777777777777666664
No 319
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=26.34 E-value=24 Score=26.29 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=10.9
Q ss_pred hhhHHHHHHhcc
Q 010222 262 EVVDDLFSAYMN 273 (514)
Q Consensus 262 e~~ddlf~~Ymn 273 (514)
.|+-|||++||+
T Consensus 26 qALQdLlseY~~ 37 (40)
T 4e17_B 26 QALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 689999999996
No 320
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=26.33 E-value=2.1e+02 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQTEATTLSAQLTL 480 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~LqtENssLs~QLtl 480 (514)
++||.+-++-|.+++..|+.|-..|..++..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777776654
No 321
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.29 E-value=67 Score=23.70 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTL 474 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssL 474 (514)
+.|..|+.+++.|+.|...|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 322
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.29 E-value=2.3e+02 Score=26.73 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGLTN-------QNNELKFRLQAM 502 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL~t-------ENkELK~RLQaL 502 (514)
...|+.-+.+|+.+|..|+.+.-.|.. |.++|+.++..|
T Consensus 60 e~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 445566666666666666655444443 344555555544
No 323
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.27 E-value=52 Score=22.51 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 010222 491 QNNELKFRLQAME 503 (514)
Q Consensus 491 ENkELK~RLQaLE 503 (514)
.|..||+++.+||
T Consensus 8 knarlkqeiaale 20 (28)
T 3ra3_B 8 KNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 3334444444333
No 324
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.19 E-value=1e+02 Score=21.13 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 468 QTEATTLSAQLTLLQ 482 (514)
Q Consensus 468 qtENssLs~QLtlLQ 482 (514)
+-||..|.+++..|.
T Consensus 6 efendaleqkiaalk 20 (28)
T 3ra3_A 6 EFENDALEQKIAALK 20 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 334444444443333
No 325
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.09 E-value=4.4e+02 Score=28.72 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
.-+..+|.-|+.++.....+..+...++.....+..|...+
T Consensus 363 NEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 363 NKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333333333333333333
No 326
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=25.72 E-value=37 Score=26.17 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEATTL 474 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtENssL 474 (514)
+..|++.||.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5578999999999888766554
No 327
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=25.18 E-value=1.1e+02 Score=29.09 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 448 RSKERKMRYISE------LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 448 RSReRKKqYLeE------LE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
+-.+.|++||.| +......|+.-+.+|+..|..|+.+.-.|......-...|..|.+
T Consensus 35 ~k~eeKkkiLaER~kPLnid~se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~ 97 (182)
T 1ytz_I 35 AKEVEKQNYLAEHSPPLSLPGSMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQ 97 (182)
T ss_dssp HHHHHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHH
Confidence 344566777775 222445677777888888888887777777766666666666644
No 328
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.82 E-value=3.4e+02 Score=23.42 Aligned_cols=45 Identities=7% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
+.++..++..|+.+...++.+++...++++.|+.-.-.|...|.+
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544443
No 329
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=24.80 E-value=1.6e+02 Score=24.47 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRDSVG 487 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre~~s 487 (514)
.||..+..+..|...+...+..+|.+.+.
T Consensus 12 ~~eT~iaa~~~ev~t~~~~l~~~e~~vqa 40 (74)
T 1avy_A 12 AIETDIASVRQEVNTAKGNISSLQGDVQA 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhheeeccccchhhhhhhhhHH
Confidence 34444444444444444444444443333
No 330
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.60 E-value=1.7e+02 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=20.9
Q ss_pred CCcchHHHhhhcchhHHhhhhccChHHHHHHHHhH
Q 010222 409 GEFSGAELKKIMANEKLAEIALTDPKRAKRILANR 443 (514)
Q Consensus 409 g~~s~~E~KKim~~ekLaElAl~DpKR~KRiLkNR 443 (514)
=.|++.+...+.-=-.|.++- ..-+.+|+++...
T Consensus 53 R~Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 53 RIFNEEALKYLEMILCLKNTG-MPIQKIKQFIDWS 86 (148)
T ss_dssp EEBCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHhh
Confidence 347777777766545554432 3557777877643
No 331
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.53 E-value=1.5e+02 Score=22.35 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTN 490 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~t 490 (514)
++|=+++.....|...-..+++.||.....|..
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777776666554
No 332
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.53 E-value=2.6e+02 Score=22.50 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre 484 (514)
+....|++.|+.|...+..++..|+++
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~E 31 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEAD 31 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544443
No 333
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.40 E-value=67 Score=25.63 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 464 VQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 464 Vq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
+..|-.+.......-..+.+++..+..+.+||..-|..+|++
T Consensus 14 I~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~ 55 (64)
T 3t97_C 14 ITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEES 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444455555555666666655555443
No 334
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.39 E-value=4.1e+02 Score=24.27 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 442 NRQSAARSKERKMRYISELEHKVQTLQTEATTLSA------------QLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 442 NRESAqRSReRKKqYLeELE~KVq~LqtENssLs~------------QLtlLQre~~sL~tENkELK~RL 499 (514)
||..--.++.+=-...+.|=.+|..||.-...|+. ++..++.++..+..+.+.|+..|
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i 77 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFI 77 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445544444555555555555555555554 45555555655655555555444
No 335
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=24.04 E-value=15 Score=30.12 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 474 LSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 474 Ls~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
|..++..|.=..+.|...|..||.+|+
T Consensus 53 lkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 53 LKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp THHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 555666666666677777777777665
No 336
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.01 E-value=4.2e+02 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 480 LLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 480 lLQre~~sL~tENkELK~RLQaL 502 (514)
.++..+..|..+..+-...|..+
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~l 134 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTL 134 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444544444444444444
No 337
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.98 E-value=3e+02 Score=28.00 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 010222 435 RAKRILAN 442 (514)
Q Consensus 435 R~KRiLkN 442 (514)
.+.|++.|
T Consensus 199 e~~~~~~n 206 (373)
T 3hhm_B 199 EIQRIMHN 206 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34444444
No 338
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.90 E-value=3.2e+02 Score=22.90 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaL 502 (514)
..+...+..|+.+...++.+++...+++..|..-.-.|...|.+.
T Consensus 40 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 40 DNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555554443
No 339
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.85 E-value=3.6e+02 Score=24.10 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQT-EATTLSAQLTLLQ--------RDSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 457 LeELE~KVq~Lqt-ENssLs~QLtlLQ--------re~~sL~tENkELK~RLQaLEQQa 506 (514)
++.|+.+++.|.. +-..+...+.... .++..-..+..++..||..|+...
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L 69 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCM 69 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666633 4444444554433 345555667777778887777654
No 340
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.80 E-value=1.8e+02 Score=26.94 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 450 KERKMRYISELEHKVQTLQ 468 (514)
Q Consensus 450 ReRKKqYLeELE~KVq~Lq 468 (514)
=++|++||.||+.+...++
T Consensus 21 I~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678888888887766554
No 341
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.76 E-value=1e+02 Score=26.52 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 010222 470 EATTLSAQLTLLQ 482 (514)
Q Consensus 470 ENssLs~QLtlLQ 482 (514)
++..|..++..|+
T Consensus 97 ~~~~L~~~i~~Le 109 (117)
T 3kin_B 97 KNKALKSVIQHLE 109 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 342
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.57 E-value=1.5e+02 Score=24.84 Aligned_cols=55 Identities=9% Similarity=0.204 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 451 ERKMRYISELEHKVQTLQTEATTLSAQLTLLQ-RDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 451 eRKKqYLeELE~KVq~LqtENssLs~QLtlLQ-re~~sL~tENkELK~RLQaLEQQ 505 (514)
+.|++.|.+.|..+.+.+.-...|.-++..+- .....+....+.+|..|..|..+
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~e 89 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETD 89 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544444444333332221 12334555555555555555443
No 343
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.49 E-value=2.4e+02 Score=21.43 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQL 478 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QL 478 (514)
-|+.|+.|+.+...|..++
T Consensus 10 AERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 344
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=23.43 E-value=1.7e+02 Score=20.64 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQr 483 (514)
+.|..+|+.|...|-....++..|..
T Consensus 4 qalkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 4 QALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44566666666666666655555543
No 345
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.41 E-value=2e+02 Score=27.06 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.1
Q ss_pred ChHHHHH
Q 010222 432 DPKRAKR 438 (514)
Q Consensus 432 DpKR~KR 438 (514)
+|..+-|
T Consensus 121 ~paE~ir 127 (175)
T 3mud_A 121 NPAEVIR 127 (175)
T ss_dssp CHHHHHH
T ss_pred ChHHHHH
Confidence 4444334
No 346
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.22 E-value=1.4e+02 Score=20.83 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLL 481 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlL 481 (514)
+.||.+...|+.....|..+++.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444444444443
No 347
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.73 E-value=1.5e+02 Score=23.52 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQ----TEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQ 505 (514)
Q Consensus 454 KqYLeELE~KVq~Lq----tENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQQ 505 (514)
...+.+|..-|=.+. .....|..-+. -+..|..++.+|+.+++.|++|
T Consensus 28 n~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~----YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 28 KDSFHSLRDSVPSLQGEKASRAQILDKATE----YIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHSGGGTTSCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHCcCCCCCCccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 445566665554432 22333333333 3445666666777666666554
No 348
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.72 E-value=1.2e+02 Score=23.02 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 444 QSAARSKERKMRYISELEHKVQTLQTEATTLSAQLT 479 (514)
Q Consensus 444 ESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLt 479 (514)
+-|-|+=.|-++-|++||.++..-+.++..+..++.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666666666666666655555555554443
No 349
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.43 E-value=1.4e+02 Score=26.12 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=7.1
Q ss_pred cchHHHhhhcc
Q 010222 411 FSGAELKKIMA 421 (514)
Q Consensus 411 ~s~~E~KKim~ 421 (514)
|+=+|.+.++.
T Consensus 74 ~sL~eIk~~l~ 84 (148)
T 3gpv_A 74 MPIQKIKQFID 84 (148)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55667777664
No 350
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.36 E-value=2.6e+02 Score=29.31 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 010222 484 DSVGLTNQNNELKFRLQAMEQQA 506 (514)
Q Consensus 484 e~~sL~tENkELK~RLQaLEQQa 506 (514)
.+..|+.-.+.++.+|+.||...
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666544
No 351
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.29 E-value=4.5e+02 Score=24.01 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=21.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 441 ANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 441 kNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
.|..+-.-+=.+=-+..+.+|.+++.|+........+....++....|..+...|
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444433333333333333333333
No 352
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.28 E-value=3.8e+02 Score=23.08 Aligned_cols=35 Identities=26% Similarity=0.126 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 466 TLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQ 500 (514)
Q Consensus 466 ~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQ 500 (514)
..+.|...|..++..|++.+.....-..+|....+
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~ 49 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQ 49 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34456666666666666666555555555544333
No 353
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.26 E-value=4.5e+02 Score=24.01 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSV 486 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~ 486 (514)
|..|..+++..+.....-.+.+..|+..+.
T Consensus 79 Ik~L~~kLKEAE~RAE~AERsv~kLEk~id 108 (155)
T 2efr_A 79 IKVLSDKLKEAETRAEFAERSVTKLEKSID 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333333333333333333333
No 354
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.25 E-value=2.1e+02 Score=24.12 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 453 KMRYISELEHKVQTLQTEA----TTLSAQLTLLQRDSVGLTNQNNELKFRLQAME 503 (514)
Q Consensus 453 KKqYLeELE~KVq~LqtEN----ssLs~QLtlLQre~~sL~tENkELK~RLQaLE 503 (514)
=++.|++||..|..+.... ..|..-+..+-.-...|..+..+|-.+++.+.
T Consensus 24 Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~K 78 (93)
T 3t98_B 24 YRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLK 78 (93)
T ss_dssp HHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888888887755311 23444444444444555555555555555443
No 355
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.16 E-value=2.7e+02 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 459 ELE~KVq~LqtENssLs~QLtlLQre 484 (514)
.||+.-+.|+.-...|+.++..|+.+
T Consensus 21 qlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 45666666666555565555555544
No 356
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.95 E-value=2.7e+02 Score=25.20 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSA 476 (514)
Q Consensus 461 E~KVq~LqtENssLs~ 476 (514)
|.....++.|...|.+
T Consensus 66 E~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 66 EEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 357
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.95 E-value=25 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQR 483 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQr 483 (514)
++.|..|++.|+.++..+..++..+++
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666655554
No 358
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.87 E-value=5.4e+02 Score=24.94 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 443 RQSAARSKERKMRYISELEHKVQTL 467 (514)
Q Consensus 443 RESAqRSReRKKqYLeELE~KVq~L 467 (514)
...|...+.|=..++++|..++.-.
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ 188 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPL 188 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666777776666543
No 359
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.80 E-value=80 Score=24.51 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTLQTEATTLSA 476 (514)
Q Consensus 455 qYLeELE~KVq~LqtENssLs~ 476 (514)
.|+.+||.+|..|+.....|..
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4888899999988877776643
No 360
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.52 E-value=2.1e+02 Score=25.22 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLT 479 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLt 479 (514)
++++..|+.||.....++.
T Consensus 91 ~~ri~~L~~E~~~~~~el~ 109 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKI 109 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 361
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=21.46 E-value=2e+02 Score=30.30 Aligned_cols=48 Identities=15% Similarity=0.285 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 455 RYISELEHKVQTL-----QTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 455 qYLeELE~KVq~L-----qtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
.|+.+++.+++.+ +.+...+...+..++.-+. .....+++.+++.|++
T Consensus 541 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~--~~~~~~~~~~~~~l~~ 593 (605)
T 2kho_A 541 HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALK--GEDKAAIEAKMQELAQ 593 (605)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Confidence 3566666655542 3344445555544443211 0133456666665543
No 362
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.45 E-value=5.4e+02 Score=25.10 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=34.5
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 431 TDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 431 ~DpKR~KRiLkNRESAqRSReRKKqYLeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
..-|+.|+.+..+...-..|.=--..|..||+++...+.++....++|+.+.++
T Consensus 107 qp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 107 QPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 344555556666664333222222457788888888888888888888877664
No 363
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.35 E-value=3.9e+02 Score=22.90 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
.++..++..|+.+...++.+++...++++.|+.-.-.|...|.+
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIat 121 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIAT 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555445555555444444444443
No 364
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=21.31 E-value=2.5e+02 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQ 482 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQ 482 (514)
..|-.||+.|+..+.+...++..|.
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777666666666665543
No 365
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=21.23 E-value=20 Score=35.86 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 457 ISELEHKVQTLQTEATTLSAQLTLLQRDSV 486 (514)
Q Consensus 457 LeELE~KVq~LqtENssLs~QLtlLQre~~ 486 (514)
..+++.+|..+..|...|..+|..|++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 65 (385)
T 3p8q_A 36 SKQLQSDLMKVQEELTKSGTRLFDLEQKLA 65 (385)
T ss_dssp ------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666655544
No 366
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.22 E-value=4.2e+02 Score=23.24 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 458 SELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRL 499 (514)
Q Consensus 458 eELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RL 499 (514)
+.+..+.+.-..+...|..++...+..+..|...-..++..+
T Consensus 34 ~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 34 DFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666665555555544444433
No 367
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.15 E-value=1.4e+02 Score=30.14 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLT 479 (514)
Q Consensus 465 q~LqtENssLs~QLt 479 (514)
+.|+.+...|..+|.
T Consensus 31 ~~Lq~~le~L~~KI~ 45 (323)
T 1lwu_B 31 RSMKSVLEHLRAKMQ 45 (323)
T ss_dssp HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 368
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.12 E-value=3.4e+02 Score=22.20 Aligned_cols=35 Identities=6% Similarity=0.075 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 467 LQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQA 501 (514)
Q Consensus 467 LqtENssLs~QLtlLQre~~sL~tENkELK~RLQa 501 (514)
++.+...|+.-+..+--....|..+...|+..|..
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433344444444444444433
No 369
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.72 E-value=3.3e+02 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 465 QTLQTEATTLSAQLTLLQRDSVGLTNQNNEL 495 (514)
Q Consensus 465 q~LqtENssLs~QLtlLQre~~sL~tENkEL 495 (514)
+.|+.|...+..+|..-+.+++.|..+...+
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 370
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.65 E-value=2.7e+02 Score=20.80 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 010222 459 ELEHKVQTLQTEAT 472 (514)
Q Consensus 459 ELE~KVq~LqtENs 472 (514)
+|..-++.|+..|.
T Consensus 7 elknyiqeleerna 20 (46)
T 3he4_B 7 ELKNYIQELEERNA 20 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 33333444433333
No 371
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.59 E-value=1.9e+02 Score=20.80 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010222 482 QRDSVGLTNQNNELKFRLQAM 502 (514)
Q Consensus 482 Qre~~sL~tENkELK~RLQaL 502 (514)
+.....|..+|.+|..++..|
T Consensus 6 EdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444433
No 372
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.50 E-value=1.5e+02 Score=25.46 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 454 MRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQ 504 (514)
Q Consensus 454 KqYLeELE~KVq~LqtENssLs~QLtlLQre~~sL~tENkELK~RLQaLEQ 504 (514)
...|.-|+.+|...+..-..=++--+.+..+...|..++..|+.++..|.+
T Consensus 39 ~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 39 METVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888887776666666666666666666666666666665544
No 373
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.30 E-value=2.8e+02 Score=20.91 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 456 YISELEHKVQTLQTEATTLSAQLTLLQRD 484 (514)
Q Consensus 456 YLeELE~KVq~LqtENssLs~QLtlLQre 484 (514)
.++.||..++.|++.-+.|.++.+..|..
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777776666665543
No 374
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.20 E-value=1.9e+02 Score=26.14 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 461 EHKVQTLQTEATTLSAQLTLLQRDSVGLT 489 (514)
Q Consensus 461 E~KVq~LqtENssLs~QLtlLQre~~sL~ 489 (514)
++++..|+.||.....++...-++...|.
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll 119 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLL 119 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444433333333
No 375
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=20.10 E-value=2.3e+02 Score=29.96 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=7.7
Q ss_pred CcchHHHhhhcc
Q 010222 410 EFSGAELKKIMA 421 (514)
Q Consensus 410 ~~s~~E~KKim~ 421 (514)
..+++|.++.+.
T Consensus 506 ~ls~~ei~~~~~ 517 (605)
T 4b9q_A 506 GLNEDEIQKMVR 517 (605)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 466777776663
No 376
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.01 E-value=98 Score=32.05 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010222 460 LEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQ 491 (514)
Q Consensus 460 LE~KVq~LqtENssLs~QLtlLQre~~sL~tE 491 (514)
||.+++.|+.|+..+..++..++++...+..+
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~ 68 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEK 68 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
Done!