Query 010223
Match_columns 514
No_of_seqs 80 out of 82
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 22:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09531 Ndc1_Nup: Nucleoporin 100.0 2.9E-52 6.2E-57 454.0 44.9 438 9-506 1-602 (602)
2 KOG4358 Uncharacterized conser 100.0 1.9E-49 4.2E-54 412.4 31.0 443 6-512 4-583 (584)
3 KOG2056 Equilibrative nucleosi 22.1 1.5E+02 0.0033 31.9 5.2 56 250-319 32-87 (336)
4 PLN02975 complex I subunit 19.6 2.9E+02 0.0063 24.8 5.6 61 92-158 15-77 (97)
5 PF04550 Phage_holin_2: Phage 18.3 4.7E+02 0.01 23.2 6.5 59 59-148 15-73 (89)
6 COG2346 Truncated hemoglobins 15.2 2.2E+02 0.0048 26.7 4.1 37 462-509 18-59 (133)
7 PRK12768 CysZ-like protein; Re 13.0 1.4E+03 0.03 23.3 11.6 58 178-242 119-178 (240)
8 cd07619 BAR_Rich2 The Bin/Amph 12.8 4.1E+02 0.0089 27.4 5.6 33 375-410 184-216 (248)
9 PF12145 Med12-LCEWAV: Eukaryo 12.4 4.8E+02 0.01 29.5 6.3 57 452-513 258-314 (480)
10 PF08571 Yos1: Yos1-like; Int 12.2 1.9E+02 0.0041 25.0 2.5 38 373-410 15-63 (80)
No 1
>PF09531 Ndc1_Nup: Nucleoporin protein Ndc1-Nup; InterPro: IPR019049 Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three luminal loops, both concentrated at the N terminus and cytoplasmic domains largely at the C terminus, all of which are well conserved.
Probab=100.00 E-value=2.9e-52 Score=454.02 Aligned_cols=438 Identities=24% Similarity=0.350 Sum_probs=308.7
Q ss_pred hhhhhhhHHHHHHHhhhhhhHHHHHHHHh-hcC-CCchhHHHHHHHHHHHHHHHHHHhhhHh-------hcCCCCCCCCC
Q 010223 9 ETVVKNRHLGFLIWQSIPSTAIFLLFKLL-VLS-PRCSILTFLLTLSTFHVSQLAFSSALSF-------ASSPPQPKRPV 79 (514)
Q Consensus 9 ~~~~~~r~~~~~~~q~~~~~~~~~~~~~~-~~s-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~ 79 (514)
++|.++||.....|-.+.+-.+...+..+ -++ .-.+..|+++++..+-+-.+++.++.++ -.. ..++...
T Consensus 1 ~~vl~~Rf~~a~~~~~~~~~~~~~~~~ll~~~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~~r~~~~~-v~~~~~~ 79 (602)
T PF09531_consen 1 QKVLHRRFNHASRLSLLLSYLLSAAFLLLSNFSGSWSSWFWSWFPSGYTGIRSLLLFLSLLLIIVLRKSQLH-VEPRPYS 79 (602)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCC
Confidence 47899999998888887776664444442 122 1134566666663222222222222211 112 3455555
Q ss_pred ChhhhhhhhhccCCcccchhhhhhhHHHHHHHHHHhhhhh-hhhhhh-cccCC----------Cch----hhHHHhhhhH
Q 010223 80 PPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFL-SVASVC-WLEGF----------DGV----ELFWRVGFRG 143 (514)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~----------~~~----~~~~~~~f~G 143 (514)
+.++...+.+ .+.+++.+.+.-+++|.+ +.++.. .+++. .+- +--.=+-+.|
T Consensus 80 s~~~~l~~~l------------~~~~~l~~~~~y~~s~~l~~~~y~~~~~~~~~~~~i~~~~~~~~~~LNe~~lyl~~~~ 147 (602)
T PF09531_consen 80 SRFAQLLHSL------------FSQSFLQTLLFYAVSGWLFAWVYIWSLSESYRLLWIKSKEYYERPCLNERPLYLWFSG 147 (602)
T ss_pred CHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHcCcccccceEeccccCCCceechHHHHHHHHH
Confidence 6655443333 123333333333444442 222222 22221 000 1123455689
Q ss_pred HHHHHHHHHHHHhccceEEeeccccCCcchhhhhhchHHHHHHHHHHHHHHHhhhhhhhhhhc------------cc---
Q 010223 144 FVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLAD------------QL--- 208 (514)
Q Consensus 144 ~~lGl~~s~~y~~~~~~~L~FPiIQq~kf~~~K~~Lp~~l~~Sl~~Sl~~~~~s~vl~~~l~~------------~~--- 208 (514)
+++|++|++.|+++++++++||+++|+++.++|+.+|.++.+|++.|++.++.+.++|++..+ .+
T Consensus 148 ~~l~~~ys~~~~~~d~~~l~f~~~~~~~~~~l~~~l~~~~~~s~~~s~~~~~~~~~~Y~~~~r~~~~~~~~~l~~~~~~~ 227 (602)
T PF09531_consen 148 LFLGLVYSVQHLYFDRDRLSFPIIQQPPFQRLKSSLPSILIKSLILSLYSTLVYPIIYFFGLRSPIWWLSLFLARLFLGL 227 (602)
T ss_pred HHHHHHHHHHHHHcCCCEeCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999988876766643222 11
Q ss_pred -ch----------hH-H---HHHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCCCccCCCCChhHHHHhhccCCchHHH
Q 010223 209 -KS----------EI-T---FYIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSEPLLAALEESTPSSLLQ 273 (514)
Q Consensus 209 -rs----------~~-l---l~~~~~Ll~~~W~lt~~Lf~I~~TEr~~F~~P~~s~a~e~dPse~Ll~aL~~~~~~~ivQ 273 (514)
++ .. + +++.+++++++|+++|++|++|+||. +|+.++|.++.++||++||++||++++ |++|
T Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~we~~n~~f~v~~t~~-~l~~~kpis~~s~dp~~tLl~gL~~~~--p~~q 304 (602)
T PF09531_consen 228 PRSSTLPSFSPPLSFSLLLRLWLLGFLLVLLWELVNHLFDVYLTEP-PLKKGKPISSFSKDPNGTLLSGLKSKK--PLVQ 304 (602)
T ss_pred ccccCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCCCCCCCCCCCchHHHHHHHcCCC--cHHH
Confidence 11 11 1 25778999999999999999999999 999888999999999999999999544 8999
Q ss_pred HHHHHHHHHHhhcCCChhHHhhhhccC----cccHHHHHHHHhhHHHHHHHHHhccccCCCCCc-------cc------c
Q 010223 274 YLAYLDLCMVCENNVDTWRRAAFFEET----SETYRRVINVSLKPLKQLATKLGEGMEAGSVDK-------DI------S 336 (514)
Q Consensus 274 ~LA~~DL~~laq~~~~~~RR~~iFses----G~nW~~I~~~CL~~L~~lT~~L~~~~e~~s~~~-------~l------s 336 (514)
++|||||+.+|+++++ ||++||+|+ |+||++|+++|+++|++++++++++++.+...+ +. .
T Consensus 305 ~~Af~eL~~iA~~~~~--rR~~iF~~~~~~~p~~W~~I~~eCl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (602)
T PF09531_consen 305 LLAFQELAYIAQSSPS--RRKAIFSDSDRGGPSNWSQILDECLSVIKELTQRLENYLEPIDPKPPPPPPPSPKEEPTSSS 382 (602)
T ss_pred HHHHHHHHHHHhCCCc--hHHHHhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCCc
Confidence 9999999999998853 899999887 379999999999999999999998887532111 00 0
Q ss_pred c---------c-----------cCCCC------------------------cc----cc------------cc--h----
Q 010223 337 N---------Q-----------LLSPT------------------------DM----RV------------DS--K---- 350 (514)
Q Consensus 337 ~---------q-----------~~sP~------------------------~~----~~------------~s--K---- 350 (514)
. . ..+|. .. +. ++ +
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (602)
T PF09531_consen 383 PPLKKLPFLSRISSPPSPDSIFAPSPPPRSSRDFLWQYNSSVGSSGSSPPTTPQASSKAKSSKPSPILTPIQSFLSLVQV 462 (602)
T ss_pred cccccccccccccCCCccccccCCCCcccccccccccccccccCCCCCCCCccccccccccccchHHHHHHHHhhhhhhH
Confidence 0 0 00000 00 00 00 0
Q ss_pred ----hH---------------------Hhh-hhhhhHHHHHHHHhHHHHhhhcccccccccccCChHHHHHHHHHHHHHH
Q 010223 351 ----YS---------------------EEL-NNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAV 404 (514)
Q Consensus 351 ----~~---------------------~~~-~~~QlviW~~eaLS~L~vaSl~EDrfGVVQ~t~dlPaII~tLLsll~Av 404 (514)
.. ..+ .|.|+++|++|+|++|+++|++||+|||||+ |+|+||++|++++.++
T Consensus 463 ~~~~~~~~~l~s~~g~~f~~s~~r~~~~~vl~~~~~~~~ai~aLs~L~~~Sl~ED~yG~Vq~--dl~~il~~l~~~~~~l 540 (602)
T PF09531_consen 463 FKNLYIKQFLKSPFGIPFRFSERRDAESRVLPNPQLYIWAIEALSNLLVASLTEDKYGVVQR--DLPEILRTLTRLIRAL 540 (602)
T ss_pred HHHHHHHHHhhccccceeEeehhhhhhHHhccchHHHHHHHHHHHHHHHHHHhhCCCCcchh--hHHHHHHHHHHHHHHH
Confidence 00 014 6899999999999999999999999999999 5999999999999999
Q ss_pred HHHhhhccCCCCCCccCCccccccccccCCcccccchhhcCcchhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhccccc
Q 010223 405 EAFMGKKTNLQAPHHLMGPAGIKWAQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLE 484 (514)
Q Consensus 405 E~~~~~~t~~~~p~~~~~P~~i~w~~~~~gr~~~~~~kk~~~~v~~~~~al~daLktaLYrIv~tF~d~L~~~~~~~~~~ 484 (514)
|+|.+.. |...+|++..++.+ .....+.++|++|+|+|||+.+|+++|++
T Consensus 541 ~~~~~~~-----------~~~~~~~~~~~~~~-----------~~~~~~~l~~~l~~~l~~I~~~F~~~L~d-------- 590 (602)
T PF09531_consen 541 DKYVRWP-----------PASVHWTDVQSDDR-----------ECPEVSILRDALKSALYRIVTKFGPYLND-------- 590 (602)
T ss_pred HHHhccc-----------cccccccccccccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 9998763 33457766411111 11345699999999999999999999999
Q ss_pred hhhhhcCCCCCCChHHHHHHHH
Q 010223 485 KDWLVSGKPLFGTRELLLQKLR 506 (514)
Q Consensus 485 ~~~~~~~kp~~g~~~~~~qkL~ 506 (514)
.+.++++.+++|
T Consensus 591 ----------l~L~~~~~kl~q 602 (602)
T PF09531_consen 591 ----------LRLSPDVIKLLQ 602 (602)
T ss_pred ----------cCCCHHHHHHhC
Confidence 458999998876
No 2
>KOG4358 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-49 Score=412.44 Aligned_cols=443 Identities=20% Similarity=0.245 Sum_probs=308.7
Q ss_pred CCchhhhhhhHHHHHHHhhhhhhHHHHHHHHhhcCCC---c----hhHH------------HHHHHHHHHHHHHHHHhhh
Q 010223 6 VEPETVVKNRHLGFLIWQSIPSTAIFLLFKLLVLSPR---C----SILT------------FLLTLSTFHVSQLAFSSAL 66 (514)
Q Consensus 6 ~~~~~~~~~r~~~~~~~q~~~~~~~~~~~~~~~~s~~---~----~~~~------------~~~~~~~~~~~~~l~~~~~ 66 (514)
+..+|+.|+=+++=-.=-+.+|.++.++-+| .+|+ - |.-| -+|.++..-++-.+|++..
T Consensus 4 ~~s~n~~k~~l~~r~~~s~~~sv~~~p~~tt--vf~~f~~~~l~hp~qwv~~~~~~i~s~y~~f~~~~l~~s~I~~~V~~ 81 (584)
T KOG4358|consen 4 GRSRDILWRVLGWRIVASIVWSVLFLPICTT--VFIIFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFN 81 (584)
T ss_pred cccccHHHHHhhHHHHHHhhHHHHhhhhhhe--eeeeeecccccchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445666555544444444455555555555 3433 1 3222 2333344444555555544
Q ss_pred HhhcCCCCCCCCCChhhhhhhhhccCCcccchhhhhhhHHHHHHHHHHhhhhhhhhhhh-----cccCCCchh----hHH
Q 010223 67 SFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVC-----WLEGFDGVE----LFW 137 (514)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~----~~~ 137 (514)
...-- --++++++-+++-.+.. | |+..+ ++.=.++.++..-++.+.+| +-..|-|=. -.-
T Consensus 82 ~~~~l-~~~~~~~sr~~~l~~~i----P----~~~~~--~f~h~~~g~~maw~~~~~~~~~yq~l~~~ctgq~c~~~y~v 150 (584)
T KOG4358|consen 82 VEFYA-VVPSIPCSRLALIGKII----P----QQLMH--SFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGQTCLNEYHL 150 (584)
T ss_pred hhhee-eccCCCchHHHHHHHHh----H----HHHHH--HHHHHHHHHHHHHHHHHhcccccceeeeeccchhHHHHHHH
Confidence 44211 23455555566555444 2 23332 22223444455555566665 111122210 122
Q ss_pred HhhhhHHHHHHHHHHHHHhccceEEeeccccCCcchhhhhhchHHHHHHHHHHHHHHHhhhhhhhhhhcccc---h----
Q 010223 138 RVGFRGFVCGLLYAFFYVYKQRWVLEFPIIQRPPFFSFKMSLPSAIKKALKLSGAAYLFSALPVVFLADQLK---S---- 210 (514)
Q Consensus 138 ~~~f~G~~lGl~~s~~y~~~~~~~L~FPiIQq~kf~~~K~~Lp~~l~~Sl~~Sl~~~~~s~vl~~~l~~~~r---s---- 210 (514)
-+.+.|+.+|..|.+-|+.+++.+++||||||+|+.++|+.+...++++...|+..+...++.|++++-..+ +
T Consensus 151 y~l~~ga~~g~sy~~~~~~~~~~~~~fpiv~q~r~~~~r~~l~~~v~~s~~~slf~t~~~~a~~~~~g~i~~a~~sta~~ 230 (584)
T KOG4358|consen 151 FFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMN 230 (584)
T ss_pred HHHHHHhhhchhhhhHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHhhhhccchHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999887777777643221 1
Q ss_pred ------------------hHHH--HHHHHHHHHHHHHHHHHHHHHHhceeecCCCCCCCccCCCCCh-hHHHHhhccCCc
Q 010223 211 ------------------EITF--YIGTFAVFLCWELDHHLHQVLHTKRFMFAPPKGSAAAETNPSE-PLLAALEESTPS 269 (514)
Q Consensus 211 ------------------~~ll--~~~~~Ll~~~W~lt~~Lf~I~~TEr~~F~~P~~s~a~e~dPse-~Ll~aL~~~~~~ 269 (514)
.+++ |+.|..++-.|++++.+|+|+.||.++|++|+|-++....-+. ||+++++ .|+.
T Consensus 231 ~~ide~~~~~~g~v~lnl~llFhv~L~g~~~l~~~yis~~~~~i~~~e~~~fpv~pP~a~~sheqd~~~lp~v~~-~n~~ 309 (584)
T KOG4358|consen 231 LHIDEQVHRPLDTVSLNLSLLFHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSHEQDDECLPKVLN-SNPP 309 (584)
T ss_pred HHHHHhcCcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcccCCccccchhhccccc-cCcH
Confidence 1122 4667777889999999999999999999987666655443222 5666665 6767
Q ss_pred hHHHHHHHHHHHHHhhcCCChhHHhhhhcc--Cc---ccHHHHHHHHhhHHH-HHHHHHhccccCCCCCc----------
Q 010223 270 SLLQYLAYLDLCMVCENNVDTWRRAAFFEE--TS---ETYRRVINVSLKPLK-QLATKLGEGMEAGSVDK---------- 333 (514)
Q Consensus 270 ~ivQ~LA~~DL~~laq~~~~~~RR~~iFse--sG---~nW~~I~~~CL~~L~-~lT~~L~~~~e~~s~~~---------- 333 (514)
++.+++|..||.++++++. + ||+++|++ +| +||++|+++|+++|+ .++.++.++++.+...+
T Consensus 310 ~v~k~~AlHdl~l~~~~~~-~-rR~eVFsLsqPG~hP~nW~ais~~Cl~~L~~~~~~~l~s~~~~~~~~~~~~~~p~p~V 387 (584)
T KOG4358|consen 310 PIIKYLALHDLMLLSQYSP-S-RRQEVFSLSQPGGHPHNWTAISRECLNLLNPVEPKKLNSPEETAFQTPKSSQMPRPSV 387 (584)
T ss_pred HHHHHHHHHHHHHHhccCc-h-hhhheeeecCCCCCCcchHHhHHHHHHhcCcccchhhcCHHHHhccCcccccCCCCCC
Confidence 7999999999999999874 3 99999954 55 399999999999999 67778877766653111
Q ss_pred c------cc---------cc------cCCCCcc------------------c------cc---------------chhHH
Q 010223 334 D------IS---------NQ------LLSPTDM------------------R------VD---------------SKYSE 353 (514)
Q Consensus 334 ~------ls---------~q------~~sP~~~------------------~------~~---------------sK~~~ 353 (514)
| ++ |+ .+||..+ + .+ +|+++
T Consensus 388 p~~~~~~LM~~~~~pR~~r~~~~~~t~~S~qq~~~~~~ps~~t~~~~~~~~~~~~~~~~~i~nfL~~~v~i~y~fs~~~~ 467 (584)
T KOG4358|consen 388 PMADVNTLMGSPQSPRLIRRGPRLWTSASDQQMTEFSNPSPSTSISAESVIYWIQNKREQIKNFLSKRVLIMYFFSKHPE 467 (584)
T ss_pred chhhhhHHhcCcccHHHHhhccCCCCCCChhhhhcccCCCCCcccCcceeeehhhhhHHHHHHHHhhCceEEEEeccCCc
Confidence 0 11 11 2222110 0 00 12222
Q ss_pred -----hhhhhhhHHHHHHHHhHHHHhhhcccccccccccCChHHHHHHHHHHHHHHHHHhhhccCCCCCCccCCcccccc
Q 010223 354 -----ELNNFQLCSWCARTAASLTVHSHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGKKTNLQAPHHLMGPAGIKW 428 (514)
Q Consensus 354 -----~~~~~QlviW~~eaLS~L~vaSl~EDrfGVVQ~t~dlPaII~tLLsll~AvE~~~~~~t~~~~p~~~~~P~~i~w 428 (514)
.|.|+|+++.++|||++||++|++||||||||+ |+|+||++++.++.|+|+|-.. +
T Consensus 468 a~~~~~~~da~m~~Ya~eAL~~lvaaS~~EDrfGVVQ~--DLpaiI~~l~KL~~aiDkys~r---------------~-- 528 (584)
T KOG4358|consen 468 ASIQAVFSDAQMHIYALEALSHLVAASFTEDRFGVVQT--DLPAIINTLLKLQEAVDKYSPR---------------I-- 528 (584)
T ss_pred ccceeecccchhHHHHHHHHHHHHHHHhcCCccceecc--cHHHHHHHHHHHHHHHHhhChh---------------h--
Confidence 277999999999999999999999999999999 6999999999999999999333 1
Q ss_pred ccccCCcccccchhhcCcchhhhHHHHHHHHHHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCChHHHHHHHHhh
Q 010223 429 AQLNTGRRDTGMVKKRGGLLHSKAFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLF 508 (514)
Q Consensus 429 ~~~~~gr~~~~~~kk~~~~v~~~~~al~daLktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~~~~~~qkL~~F 508 (514)
.|+..++++| +.+++++.+||++||||++||||||++-+ .|+||..+||+|
T Consensus 529 ----~gsi~d~S~~-------t~~~~~raslk~SLyrI~ttFg~hL~~L~------------------~P~Eh~R~lq~~ 579 (584)
T KOG4358|consen 529 ----SGSLVDTSYK-------TLRFAFRASLKTSLYRITTTFGEHLNALQ------------------APAEHQRRLQQF 579 (584)
T ss_pred ----eeeeeecchH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------CCHHHHHHHHHH
Confidence 2555554444 78999999999999999999999999965 799999999999
Q ss_pred hhcc
Q 010223 509 LDFQ 512 (514)
Q Consensus 509 l~~~ 512 (514)
++++
T Consensus 580 ~~~~ 583 (584)
T KOG4358|consen 580 LEFK 583 (584)
T ss_pred HhcC
Confidence 9986
No 3
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=22.13 E-value=1.5e+02 Score=31.88 Aligned_cols=56 Identities=25% Similarity=0.551 Sum_probs=37.2
Q ss_pred ccCCCCChhHHHHhhccCCchHHHHHHHHHHHHHhhcCCChhHHhhhhccCcccHHHHHHHHhhHHHHHH
Q 010223 250 AAETNPSEPLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETSETYRRVINVSLKPLKQLA 319 (514)
Q Consensus 250 a~e~dPse~Ll~aL~~~~~~~ivQ~LA~~DL~~laq~~~~~~RR~~iFsesG~nW~~I~~~CL~~L~~lT 319 (514)
.+.--|+.+||+-+..-. -.+-.|++++.+- ||| ..++|.||+.|+. ||.+|+.|-
T Consensus 32 nd~wGPs~~lm~eIA~~t----y~~~e~~eIm~vi------~kR---l~d~gknWR~VyK-aLtlleyLl 87 (336)
T KOG2056|consen 32 NDPWGPSGTLMAEIAQAT----YNFVEYQEIMDVL------WKR---LNDSGKNWRHVYK-ALTLLEYLL 87 (336)
T ss_pred cccCCCchHHHHHHHHHh----cCHHHHHHHHHHH------HHH---HhhccchHHHHHH-HHHHHHHHH
Confidence 333456777777776422 2346666666644 477 7788999999865 788877765
No 4
>PLN02975 complex I subunit
Probab=19.62 E-value=2.9e+02 Score=24.77 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCcccchhhhh--hhHHHHHHHHHHhhhhhhhhhhhcccCCCchhhHHHhhhhHHHHHHHHHHHHHhcc
Q 010223 92 WSPDFRRRAVV--SFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWRVGFRGFVCGLLYAFFYVYKQ 158 (514)
Q Consensus 92 ~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~G~~lGl~~s~~y~~~~ 158 (514)
++|-|+|..+- ..+...+..+++++=.+...+-.. ..++....++ +-.+|++-++++.+.+
T Consensus 15 ~dP~f~rVv~yfr~sDY~~~a~~ta~s~~~~~~~~~~---~~~~~~~mr~---ag~iG~~gGf~~aYq~ 77 (97)
T PLN02975 15 RNPTFTKVVGNFSALDYLRFATITGVSVTVGYLSGIK---PGIRGPSMVT---GGLIGLMGGFMYAYQN 77 (97)
T ss_pred CCCChHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccC---ccccchHHHH---HHHHHHhhhHHhhhcc
Confidence 46777554443 455666665555554444443322 2234445554 6677888888887776
No 5
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=18.35 E-value=4.7e+02 Score=23.19 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHHHhhhHhhcCCCCCCCCCChhhhhhhhhccCCcccchhhhhhhHHHHHHHHHHhhhhhhhhhhhcccCCCchhhHHH
Q 010223 59 QLAFSSALSFASSPPQPKRPVPPLRLAFSLLSSWSPDFRRRAVVSFTLMLFVAVAAASGFLSVASVCWLEGFDGVELFWR 138 (514)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 138 (514)
+.+++++.++.+.-|- ..+| |+-=.-+.+++|+++.+..--.++....+-
T Consensus 15 GalIalgk~L~s~Epi------t~RL------------------------~iGR~ilGs~~S~~Aga~Li~~Pdl~plAv 64 (89)
T PF04550_consen 15 GALIALGKVLASNEPI------TLRL------------------------FIGRVILGSAVSVVAGAALIQFPDLPPLAV 64 (89)
T ss_pred HHHHHHHHHHccCCCC------chhH------------------------HhHHHHHhhHHHHHHHHHHhcCCCCCHHHH
Confidence 7777999999888221 1222 223336677777777773333344445554
Q ss_pred hhhhHHHHHH
Q 010223 139 VGFRGFVCGL 148 (514)
Q Consensus 139 ~~f~G~~lGl 148 (514)
.|+ |..+|.
T Consensus 65 ~Gl-gsalGI 73 (89)
T PF04550_consen 65 IGL-GSALGI 73 (89)
T ss_pred HHH-HHHHHh
Confidence 443 555554
No 6
>COG2346 Truncated hemoglobins [General function prediction only]
Probab=15.19 E-value=2.2e+02 Score=26.75 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHhhhhhhhccccchhhhhcCCCCC-----CChHHHHHHHHhhh
Q 010223 462 SIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLF-----GTRELLLQKLRLFL 509 (514)
Q Consensus 462 aLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~-----g~~~~~~qkL~~Fl 509 (514)
+|.++|.+|.+.+...+. =+|+| |+.++|.++|.+|+
T Consensus 18 ~i~~Lv~~FY~rV~~d~~-----------l~piF~~dl~~~~~k~~afl~~f~ 59 (133)
T COG2346 18 TIDLLVERFYERVLEDPR-----------LGPIFPADLAGTWPKQKAFLTQFW 59 (133)
T ss_pred HHHHHHHHHHHHHhcCcc-----------ccccCCCccccchHHHHHHHHHHh
Confidence 899999999999987541 14666 56677777777775
No 7
>PRK12768 CysZ-like protein; Reviewed
Probab=12.98 E-value=1.4e+03 Score=23.29 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=30.6
Q ss_pred hchHHHHHHHHHHHHHHHhhhh--hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhceeec
Q 010223 178 SLPSAIKKALKLSGAAYLFSAL--PVVFLADQLKSEITFYIGTFAVFLCWELDHHLHQVLHTKRFMF 242 (514)
Q Consensus 178 ~Lp~~l~~Sl~~Sl~~~~~s~v--l~~~l~~~~rs~~ll~~~~~Ll~~~W~lt~~Lf~I~~TEr~~F 242 (514)
.++.+++++++.-.+....... ..+++|- .. .....++-.|.++...++.-..+|..+
T Consensus 119 ~i~~sl~~~l~~l~~~l~~~ll~L~L~fIP~-----v~--~vl~~l~~awLl~~ey~d~a~~r~~~~ 178 (240)
T PRK12768 119 PLGRALIESLKFLGLVILGNLVALPLLFVPG-----IN--LIAFFVINGYLLGREFFEFAAMRFRSE 178 (240)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3566777777654433321111 1233331 10 113456778889999888766655543
No 8
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=12.77 E-value=4.1e+02 Score=27.42 Aligned_cols=33 Identities=12% Similarity=0.169 Sum_probs=25.7
Q ss_pred hhcccccccccccCChHHHHHHHHHHHHHHHHHhhh
Q 010223 375 SHKEDRFGVAQLSGSNIDVISTLLSCLLAVEAFMGK 410 (514)
Q Consensus 375 Sl~EDrfGVVQ~t~dlPaII~tLLsll~AvE~~~~~ 410 (514)
-.++|-|+++.+ ....++.|..++.|--.|.++
T Consensus 184 ~~~~~m~~~l~~---e~e~~~~l~~Lv~AQleYHr~ 216 (248)
T cd07619 184 QLSADMYSFVAK---EIDYANYFQTLIEVQAEYHRK 216 (248)
T ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999998 455667788888888888665
No 9
>PF12145 Med12-LCEWAV: Eukaryotic Mediator 12 subunit domain; InterPro: IPR021990 This domain is found in eukaryotes, and is typically between 325 and 354 amino acids in length. The function of this particular region of the Mediator subunit Med12 is not known, but there is a conserved sequence motif: LCEWAV, from which the name derives.
Probab=12.36 E-value=4.8e+02 Score=29.51 Aligned_cols=57 Identities=28% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCChHHHHHHHHhhhhccc
Q 010223 452 AFAMADVLRTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGTRELLLQKLRLFLDFQA 513 (514)
Q Consensus 452 ~~al~daLktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~~~~~~qkL~~Fl~~~~ 513 (514)
+.+++.-|+.=.-.|.+....+. ...=|||=+++|--.-+..+..++-|..|||-.|
T Consensus 258 A~vVA~LLekrq~~~~~~~~~~s-----~~~d~k~s~~s~~~~~~~~PvfQ~~L~~FLD~~A 314 (480)
T PF12145_consen 258 AMVVAKLLEKRQNEIEAERCNES-----EVLDEKDSISSGSLSISSLPVFQNLLMKFLDTQA 314 (480)
T ss_pred HHHHHHHHHHHHHHhhhhccccc-----ccCcccccccccccCCCcchHHHHHHHHHhcccC
Confidence 44555555544444444332222 2355788888886666677999999999999765
No 10
>PF08571 Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes [].
Probab=12.20 E-value=1.9e+02 Score=25.00 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=28.1
Q ss_pred Hhhhccccc------ccccccC-----ChHHHHHHHHHHHHHHHHHhhh
Q 010223 373 VHSHKEDRF------GVAQLSG-----SNIDVISTLLSCLLAVEAFMGK 410 (514)
Q Consensus 373 vaSl~EDrf------GVVQ~t~-----dlPaII~tLLsll~AvE~~~~~ 410 (514)
+|=++|||| |.-|.++ |-++|=.-+..++-+|..||+-
T Consensus 15 iAILnE~RFL~kiGw~~~~~~~~g~~~~~~siK~qii~LI~aVrT~mRi 63 (80)
T PF08571_consen 15 IAILNEDRFLAKIGWSSSQNSGFGFGGDPNSIKAQIINLIRAVRTLMRI 63 (80)
T ss_pred HHHcCHHHHhccCCCCCccccccccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 456788886 3333222 5778999999999999999986
Done!