Query 010223
Match_columns 514
No_of_seqs 80 out of 82
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tqe_X Histone deacetylase 9; 22.1 21 0.00072 23.7 0.2 14 497-510 7-20 (26)
2 1dlw_A Hemoglobin; oxygen stor 20.4 96 0.0033 25.7 4.1 40 461-511 10-51 (116)
3 2bmm_A Thermostable hemoglobin 19.3 99 0.0034 25.9 4.0 40 460-510 10-51 (123)
4 1s69_A Cyanoglobin, hemoglobin 19.1 1E+02 0.0036 25.8 4.1 41 460-511 11-53 (124)
5 2gkm_A TRHBN, hemoglobin-like 18.3 1.1E+02 0.0038 26.3 4.2 40 460-510 22-63 (136)
6 3aq9_A Group 1 truncated hemog 16.6 1.2E+02 0.0042 25.3 3.9 41 460-511 14-56 (121)
7 2do5_A Splicing factor 3B subu 15.9 91 0.0031 23.9 2.5 19 491-509 24-42 (58)
8 2ly8_A Budding yeast chaperone 14.5 3.4E+02 0.012 23.8 6.3 30 395-426 30-62 (121)
9 2bkm_A Truncated hemoglobin fr 14.3 1.6E+02 0.0054 24.9 4.1 41 460-511 13-54 (128)
10 1dly_A Hemoglobin; oxygen stor 13.0 1.7E+02 0.0059 26.5 4.1 41 460-511 52-94 (164)
No 1
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=22.06 E-value=21 Score=23.68 Aligned_cols=14 Identities=36% Similarity=0.306 Sum_probs=12.2
Q ss_pred ChHHHHHHHHhhhh
Q 010223 497 TRELLLQKLRLFLD 510 (514)
Q Consensus 497 ~~~~~~qkL~~Fl~ 510 (514)
.++|..||||.|+-
T Consensus 7 ASteVKqkLqefll 20 (26)
T 1tqe_X 7 ASTEVKQKLQEFLL 20 (26)
T ss_dssp SCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 57899999999984
No 2
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=20.38 E-value=96 Score=25.73 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhhc
Q 010223 461 TSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLDF 511 (514)
Q Consensus 461 taLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~~ 511 (514)
.+|.++|..|.+.+.+.+ .=+|+|. --+.+.+|+..|+..
T Consensus 10 ~~i~~lv~~FY~~v~~dp-----------~l~~~F~~~d~~~~~~~l~~fl~~ 51 (116)
T 1dlw_A 10 AAVQAVTAQFYANIQADA-----------TVATFFNGIDMPNQTNKTAAFLCA 51 (116)
T ss_dssp HHHHHHHHHHHHHHHTCT-----------TTGGGGTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH-----------HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 578999999999998843 1266775 357888999988753
No 3
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=19.34 E-value=99 Score=25.91 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhh
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLD 510 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~ 510 (514)
..+|.++|..|.+.+.+.+ .=+|+|. --+.|.+|+..|+.
T Consensus 10 ~~~i~~lv~~FY~~v~~dp-----------~l~~~F~~~d~~~~~~~l~~fl~ 51 (123)
T 2bmm_A 10 EETFTRLARRFYEGVAADP-----------VLRPMYPEEDLGPAEERLRLFLM 51 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCT-----------TTGGGSCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCH-----------HHHHhcCCCCHHHHHHHHHHHHH
Confidence 3679999999999998743 1267775 35889999999985
No 4
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=19.10 E-value=1e+02 Score=25.81 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhhc
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLDF 511 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~~ 511 (514)
..+|.++|..|.+.|.+.+ +=+|+|. --+.+.+||-.|+..
T Consensus 11 ~~~i~~lv~~FY~~v~~dp-----------~l~~~F~~~d~~~~~~~l~~fl~~ 53 (124)
T 1s69_A 11 TTAVDLAVDKFYERVLQDD-----------RIKHFFADVDMAKQRAHQKAFLTY 53 (124)
T ss_dssp HHHHHHHHHHHHHHHHTCT-----------TTGGGGTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCh-----------HHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999833 1267776 366899999998853
No 5
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=18.27 E-value=1.1e+02 Score=26.34 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhh
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLD 510 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~ 510 (514)
..+|.++|..|.+.+.+.+ .=+|+|. --+.|.+|+..|+.
T Consensus 22 ~~~i~~lv~~FY~~v~~Dp-----------~l~~~F~~~d~~~~~~~l~~Fl~ 63 (136)
T 2gkm_A 22 HEAIEVVVEDFFVRVLADD-----------QLSAFFSGTNMSRLKGKQVEFFA 63 (136)
T ss_dssp HHHHHHHHHHHHHHHHHCT-----------TTGGGGTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH-----------HHHHhcCCCCHHHHHHHHHHHHH
Confidence 4679999999999998843 1267776 35788999999985
No 6
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=16.59 E-value=1.2e+02 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCC--hHHHHHHHHhhhhc
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGT--RELLLQKLRLFLDF 511 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~--~~~~~qkL~~Fl~~ 511 (514)
..+|.++|..|.+.+.+.+ .=+|+|.- -+.|.+|+..|+..
T Consensus 14 ~~~i~~lv~~FY~~v~~dp-----------~l~~~F~~~d~~~~~~~l~~fl~~ 56 (121)
T 3aq9_A 14 ENAMKAAVPLFYKKVLADE-----------RVKHFFKNTDMDHQTKQETDFLTM 56 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCT-----------TTGGGGTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH-----------HHHHhhCCCCHHHHHHHHHHHHHH
Confidence 5689999999999987733 12677753 48889999998853
No 7
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.93 E-value=91 Score=23.95 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=17.0
Q ss_pred CCCCCCChHHHHHHHHhhh
Q 010223 491 GKPLFGTRELLLQKLRLFL 509 (514)
Q Consensus 491 ~kp~~g~~~~~~qkL~~Fl 509 (514)
|-|+-|.++|++.|||.+.
T Consensus 24 GAPi~g~REElvdRLk~Y~ 42 (58)
T 2do5_A 24 GAPIQGNREELVERLQSYT 42 (58)
T ss_dssp TCCCCSCHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHh
Confidence 5799999999999999885
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=14.54 E-value=3.4e+02 Score=23.85 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhh---hccCCCCCCccCCcccc
Q 010223 395 STLLSCLLAVEAFMG---KKTNLQAPHHLMGPAGI 426 (514)
Q Consensus 395 ~tLLsll~AvE~~~~---~~t~~~~p~~~~~P~~i 426 (514)
.++..+++|-|.|+- ..+|++.-|+ -|.|.
T Consensus 30 ~Al~ALQeAsEayLV~lFEd~nlcaiHA--~~gGv 62 (121)
T 2ly8_A 30 MAIMALQEASEAYLVGLLEHTNLLALHL--VPRGS 62 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHcC--CccCc
Confidence 356889999999975 4577777666 34443
No 9
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=14.32 E-value=1.6e+02 Score=24.92 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCC-hHHHHHHHHhhhhc
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGT-RELLLQKLRLFLDF 511 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~-~~~~~qkL~~Fl~~ 511 (514)
..+|.++|..|.+.+.+.+. =+|+|.. -+.|.+|+..|+..
T Consensus 13 ~~~i~~lv~~FY~~v~~Dp~-----------l~~~F~~d~~~~~~~l~~Fl~~ 54 (128)
T 2bkm_A 13 EETVAKLVEAFYRRVAAHPD-----------LRPIFPDDLTETAHKQKQFLTQ 54 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-----------TGGGSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH-----------HHHHCccCHHHHHHHHHHHHHH
Confidence 46799999999999988431 1566663 56889999999853
No 10
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=12.97 E-value=1.7e+02 Score=26.46 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhhc
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLDF 511 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~~ 511 (514)
..+|.++|..|.+.+.+.. .=+|+|. --+.|.+||..|+..
T Consensus 52 ~~~I~~lVd~FY~rv~~Dp-----------~l~~~F~~~D~~~~~~kl~~Fl~~ 94 (164)
T 1dly_A 52 REAVEAAVDKFYNKIVADP-----------TVSTYFSNTDMKVQRSKQFAFLAY 94 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCT-----------TTGGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCh-----------HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6789999999999998843 1256666 356899999999853
Done!