Query 010223
Match_columns 514
No_of_seqs 80 out of 82
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 22:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xm9a1 a.118.1.24 (A:244-700) 17.0 94 0.0068 26.6 5.9 58 258-319 6-72 (457)
2 d1dlya_ a.1.1.1 (A:) Protozoan 16.4 61 0.0045 24.8 4.0 41 460-511 9-51 (121)
3 d1dlwa_ a.1.1.1 (A:) Protozoan 15.0 63 0.0046 24.8 3.8 40 461-511 10-51 (116)
4 d1rsoa_ a.194.1.1 (A:) Presyna 11.5 1.3E+02 0.0097 21.8 4.3 19 458-476 26-44 (60)
5 d1s69a_ a.1.1.1 (A:) Protozoan 9.9 1.2E+02 0.009 23.3 4.0 40 461-511 11-52 (123)
6 d1idra_ a.1.1.1 (A:) Protozoan 9.7 1.2E+02 0.0087 23.7 3.9 39 461-510 22-62 (127)
7 d1ux8a_ a.1.1.1 (A:) Protozoan 9.3 1.2E+02 0.0089 23.1 3.7 38 462-510 11-49 (119)
8 d1gm5a1 a.24.21.1 (A:7-105) Re 8.1 66 0.0048 25.6 1.5 15 498-512 50-64 (99)
9 d1i26a_ g.3.6.3 (A:) PTU-1 {As 8.0 57 0.0042 20.8 0.9 16 483-498 1-16 (34)
10 d1ppjd2 f.23.11.1 (D:196-241) 7.5 3.3E+02 0.024 18.4 5.1 32 215-246 15-46 (46)
No 1
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.01 E-value=94 Score=26.58 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=43.3
Q ss_pred hHHHHhhccCCchHHHHHHHHHHHHHhhcCCChhHHhhhhccCc---------ccHHHHHHHHhhHHHHHH
Q 010223 258 PLLAALEESTPSSLLQYLAYLDLCMVCENNVDTWRRAAFFEETS---------ETYRRVINVSLKPLKQLA 319 (514)
Q Consensus 258 ~Ll~aL~~~~~~~ivQ~LA~~DL~~laq~~~~~~RR~~iFsesG---------~nW~~I~~~CL~~L~~lT 319 (514)
+|++-|.+.+ +-+|-.|..-|..+|..+.+ -|..|.+.-| +....+-..|+.-|.+++
T Consensus 6 ~lv~~L~~~~--~~~~~~a~~~l~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 72 (457)
T d1xm9a1 6 KAVQYLSSQD--EKYQAIGAYYIQHTCFQDES--AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHSSC--THHHHHHHHHHHHHTSSCSS--HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCC--HHHHHHHHHHHHHHHcCCHH--HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5999999877 89999999999999976643 4788886542 344455666777777765
No 2
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=16.39 E-value=61 Score=24.78 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhhc
Q 010223 460 RTSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLDF 511 (514)
Q Consensus 460 ktaLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~~ 511 (514)
+.+|.+||..|.+.|.+.. . =+|.|. .-+.+++++..|+.+
T Consensus 9 ~~~i~~lv~~FY~~i~~d~---~--------l~~~F~~~d~~~~~~~~~~f~~~ 51 (121)
T d1dlya_ 9 REAVEAAVDKFYNKIVADP---T--------VSTYFSNTDMKVQRSKQFAFLAY 51 (121)
T ss_dssp HHHHHHHHHHHHHHHHTCT---T--------TGGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH---H--------HHHhCCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999844 1 145553 466788888888754
No 3
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=14.99 E-value=63 Score=24.79 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCC--hHHHHHHHHhhhhc
Q 010223 461 TSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGT--RELLLQKLRLFLDF 511 (514)
Q Consensus 461 taLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~--~~~~~qkL~~Fl~~ 511 (514)
.+|.++|..|.+.|.+.+ .=+|.|.. -+.+.+++..|+.+
T Consensus 10 ~~I~~lv~~fY~~i~~d~-----------~l~~~F~~~d~~~~~~~~~~fl~~ 51 (116)
T d1dlwa_ 10 AAVQAVTAQFYANIQADA-----------TVATFFNGIDMPNQTNKTAAFLCA 51 (116)
T ss_dssp HHHHHHHHHHHHHHHTCT-----------TTGGGGTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH-----------HHHHhcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999844 12566754 46788888888754
No 4
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.51 E-value=1.3e+02 Score=21.75 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhHHhhhh
Q 010223 458 VLRTSIYCIISAFHDEMIS 476 (514)
Q Consensus 458 aLktaLYrIv~tF~d~L~~ 476 (514)
.||++|-|+.+.|...|-.
T Consensus 26 ~lr~~iervI~iFkS~LF~ 44 (60)
T d1rsoa_ 26 QLRSSIERVISIFQSNLFQ 44 (60)
T ss_dssp HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6888999999999776643
No 5
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=9.93 E-value=1.2e+02 Score=23.25 Aligned_cols=40 Identities=15% Similarity=0.363 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCC--ChHHHHHHHHhhhhc
Q 010223 461 TSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFG--TRELLLQKLRLFLDF 511 (514)
Q Consensus 461 taLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g--~~~~~~qkL~~Fl~~ 511 (514)
.+|.+||..|.+.+.+... + +|.|. --+.+.+++..|+..
T Consensus 11 ~~i~~lv~~FY~~i~~d~~---l--------~~~F~~~d~~~~~~~~~~Fl~~ 52 (123)
T d1s69a_ 11 TAVDLAVDKFYERVLQDDR---I--------KHFFADVDMAKQRAHQKAFLTY 52 (123)
T ss_dssp HHHHHHHHHHHHHHHTCTT---T--------GGGGTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHH---H--------HHhcCcCCHHHHHHHHHHHHHH
Confidence 6899999999999988541 1 33443 346677788877753
No 6
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=9.69 E-value=1.2e+02 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCC--hHHHHHHHHhhhh
Q 010223 461 TSIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGT--RELLLQKLRLFLD 510 (514)
Q Consensus 461 taLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~--~~~~~qkL~~Fl~ 510 (514)
.+|.+||..|.+.+.+.+ .=+|.|.. -+.+.+|+..|+.
T Consensus 22 ~~I~~lv~~FY~~i~~d~-----------~l~~~F~~~d~~~~~~~~~~fl~ 62 (127)
T d1idra_ 22 EAIEVVVEDFYVRVLADD-----------QLSAFFSGTNMSRLKGKQVEFFA 62 (127)
T ss_dssp HHHHHHHHHHHHHHHHCT-----------TTGGGGTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCh-----------HHHHhcCCCCHHHHHHHHHHHHH
Confidence 689999999999998854 11455533 4667778877764
No 7
>d1ux8a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Bacillus subtilis [TaxId: 1423]}
Probab=9.32 E-value=1.2e+02 Score=23.11 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHHhHHhhhhhhhccccchhhhhcCCCCCCC-hHHHHHHHHhhhh
Q 010223 462 SIYCIISAFHDEMISSAKAGVLEKDWLVSGKPLFGT-RELLLQKLRLFLD 510 (514)
Q Consensus 462 aLYrIv~tF~d~L~~~~~~~~~~~~~~~~~kp~~g~-~~~~~qkL~~Fl~ 510 (514)
+|.+||..|.+.+.+.. . =.|.|.. -+++.+++..|+.
T Consensus 11 ~i~~lv~~FY~~v~~D~---~--------l~~~F~~~~~~~~~~~~~f~~ 49 (119)
T d1ux8a_ 11 LLSQLVDTFYERVASHP---L--------LKPIFPSDLTETARKQKQFLT 49 (119)
T ss_dssp HHHHHHHHHHHHHHHCT---T--------TGGGSCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCH---H--------HHHhcccchHHHHHHHHHHHH
Confidence 79999999999998844 1 1466643 3677777777664
No 8
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.13 E-value=66 Score=25.59 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhhhcc
Q 010223 498 RELLLQKLRLFLDFQ 512 (514)
Q Consensus 498 ~~~~~qkL~~Fl~~~ 512 (514)
.+++.+|||+|.||-
T Consensus 50 n~el~~kLqeF~~Yi 64 (99)
T d1gm5a1 50 NKDLEEKLQAFLDYV 64 (99)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 689999999999984
No 9
>d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]}
Probab=8.02 E-value=57 Score=20.80 Aligned_cols=16 Identities=50% Similarity=0.847 Sum_probs=13.9
Q ss_pred cchhhhhcCCCCCCCh
Q 010223 483 LEKDWLVSGKPLFGTR 498 (514)
Q Consensus 483 ~~~~~~~~~kp~~g~~ 498 (514)
.|||-|..|.|-||+.
T Consensus 1 aekdciapgapcfgtd 16 (34)
T d1i26a_ 1 AEKDCIAPGAPCFGTD 16 (34)
T ss_dssp CCCSSBCTTSCCTTTT
T ss_pred CcccccCCCCCccCCC
Confidence 3899999999999984
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.47 E-value=3.3e+02 Score=18.35 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhceeecCCCC
Q 010223 215 YIGTFAVFLCWELDHHLHQVLHTKRFMFAPPK 246 (514)
Q Consensus 215 ~~~~~Ll~~~W~lt~~Lf~I~~TEr~~F~~P~ 246 (514)
.+.+++..++|+.-.+....+-|+...|.||+
T Consensus 15 ~~l~~l~~l~yy~KR~~Ws~lKsrKi~y~ppk 46 (46)
T d1ppjd2 15 LMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhcccceeeeCCCC
Confidence 34556667788888888899999999998874
Done!