Your job contains 1 sequence.
>010224
MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF
KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE
FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG
KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD
FDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVKT
IISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQL
VMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQL
SLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTHVKDDG
SPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010224
(514 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2009026 - symbol:UPF3 species:3702 "Arabidopsi... 551 7.6e-72 2
ZFIN|ZDB-GENE-040426-1630 - symbol:upf3b "UPF3 regulator ... 254 4.0e-21 2
UNIPROTKB|Q2T9M5 - symbol:UPF3B "UPF3 regulator of nonsen... 232 6.0e-19 1
UNIPROTKB|F1NA07 - symbol:UPF3A "Uncharacterized protein"... 235 3.7e-18 2
ZFIN|ZDB-GENE-060721-2 - symbol:upf3a "UPF3 regulator of ... 237 5.1e-18 2
UNIPROTKB|E1BZ48 - symbol:UPF3B "Uncharacterized protein"... 236 6.1e-18 2
UNIPROTKB|F1NQA5 - symbol:UPF3B "Uncharacterized protein"... 236 6.1e-18 2
UNIPROTKB|E1BV08 - symbol:UPF3A "Uncharacterized protein"... 235 6.1e-18 2
UNIPROTKB|E2R5F4 - symbol:UPF3A "Uncharacterized protein"... 239 1.4e-17 1
UNIPROTKB|J9NUU8 - symbol:UPF3B "Uncharacterized protein"... 232 1.8e-17 2
UNIPROTKB|F1PPT4 - symbol:UPF3B "Uncharacterized protein"... 232 2.4e-17 2
UNIPROTKB|Q9BZI7 - symbol:UPF3B "Regulator of nonsense tr... 232 3.2e-17 2
UNIPROTKB|F1RUA3 - symbol:LOC414433 "Uncharacterized prot... 232 3.5e-17 2
UNIPROTKB|K7GSB3 - symbol:LOC414433 "Uncharacterized prot... 232 4.0e-17 2
UNIPROTKB|I3LNG6 - symbol:UPF3A "Uncharacterized protein"... 222 2.5e-16 1
RGD|1308778 - symbol:Upf3a "UPF3 regulator of nonsense tr... 226 2.7e-16 1
UNIPROTKB|D4A7D0 - symbol:Upf3a "Protein Upf3a" species:1... 226 2.8e-16 1
UNIPROTKB|Q9H1J1 - symbol:UPF3A "Regulator of nonsense tr... 228 2.8e-16 1
UNIPROTKB|E1BGC9 - symbol:UPF3A "Uncharacterized protein"... 217 5.4e-15 2
POMBASE|SPAC13G7.03 - symbol:upf3 "up-frameshift suppress... 186 1.8e-12 1
FB|FBgn0034923 - symbol:Upf3 "Upf3" species:7227 "Drosoph... 179 2.4e-12 3
ASPGD|ASPL0000056196 - symbol:AN0505 species:162425 "Emer... 144 1.2e-06 2
RGD|1560264 - symbol:Upf3b "UPF3 regulator of nonsense tr... 118 0.00016 1
WB|WBGene00004882 - symbol:smg-4 species:6239 "Caenorhabd... 118 0.00021 2
CGD|CAL0003622 - symbol:orf19.5277 species:5476 "Candida ... 106 0.00059 2
>TAIR|locus:2009026 [details] [associations]
symbol:UPF3 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042742 "defense response
to bacterium" evidence=IMP] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR012677 EMBL:CP002684
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC015446
eggNOG:NOG251520 KO:K14328 InterPro:IPR005120 Pfam:PF03467
IPI:IPI00890991 RefSeq:NP_001117406.1 UniGene:At.21064
ProteinModelPortal:B3H5N7 SMR:B3H5N7 STRING:B3H5N7 PaxDb:B3H5N7
PRIDE:B3H5N7 EnsemblPlants:AT1G33980.2 GeneID:840295
KEGG:ath:AT1G33980 TAIR:At1g33980 HOGENOM:HOG000006277 OMA:PLMEFIR
PhylomeDB:B3H5N7 ProtClustDB:CLSN2680357 Genevestigator:B3H5N7
Uniprot:B3H5N7
Length = 484
Score = 551 (199.0 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 110/178 (61%), Positives = 128/178 (71%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKT--SQKHQSCARAYL 58
MK PL + KVVVR+LPP+++Q QID F RYNWVSFR GK+ K+Q +RAY+
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 59 DFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEY 118
FK PEDV EFA FFNGHVFVNEKG QFK IVEYAPSQRVPK KKD REG++ KDP+Y
Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120
Query: 119 LEFLEFISKPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPRRL 176
LEFL+ I++PVENLPSAEIQL IVTPLM+F+RQKRA GP+ L
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGL 178
Score = 194 (73.4 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 60/167 (35%), Positives = 82/167 (49%)
Query: 308 KQNQRRENSGRIIRGILLNKDARQNQASG-LHSEQQI--SNLEKDKRPPRPSHVQLVMKD 364
+QNQ+ + GR+I+GILL D+R +Q+S + SEQ++ S E KRP RP++ + KD
Sbjct: 305 RQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPSRPANTR-AGKD 363
Query: 365 TNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLRRXXXXXXXXXXXXXXXXXXXXXX 424
+ + SEKQERRTRNKDRPDR W RR
Sbjct: 364 YH--------TSGTISEKQERRTRNKDRPDRVMWAPRRDGSEDQPLSSA----------- 404
Query: 425 XXXXXGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRR 471
GN G+ K + + RSGEV GG + + S R +G R
Sbjct: 405 -----GNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGR 446
Score = 161 (61.7 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 40/86 (46%), Positives = 53/86 (61%)
Query: 430 GNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRR-GPTHVKDDGSPVMSEGK 488
GN G+ K + + RSGEV GG H+ ++NGS RH RR G + K++ V+ EGK
Sbjct: 405 GNNGEVKDRMFSQRSGEVVNSSGG---HT-LENGSARHSSRRVGGRNRKEE--VVIGEGK 458
Query: 489 PLRRGGASGYGSHEKQVWVQKSSSGS 514
RRG G SHEKQ+W+QK SSG+
Sbjct: 459 TSRRGSGGGPSSHEKQMWIQKPSSGT 484
Score = 50 (22.7 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 220 KNSSGKDKSTYIL-VPKRDDQDFDKPVSSSSATGS---EVVLEESGVPANS 266
+ + KD+ ++ P+RD + D+P+SS+ G + + SG NS
Sbjct: 376 RRTRNKDRPDRVMWAPRRDGSE-DQPLSSAGNNGEVKDRMFSQRSGEVVNS 425
>ZFIN|ZDB-GENE-040426-1630 [details] [associations]
symbol:upf3b "UPF3 regulator of nonsense
transcripts homolog B (yeast)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
ZFIN:ZDB-GENE-040426-1630 GO:GO:0000166 Gene3D:3.30.70.330
HOGENOM:HOG000230909 KO:K14328 InterPro:IPR005120 Pfam:PF03467
HOVERGEN:HBG059714 CTD:65109 OrthoDB:EOG4001K9 EMBL:BC055632
EMBL:FM986820 IPI:IPI00489976 RefSeq:NP_957248.1 UniGene:Dr.13796
SMR:Q7SXF0 STRING:Q7SXF0 GeneID:393929 KEGG:dre:393929
InParanoid:Q7SXF0 NextBio:20814901 Uniprot:Q7SXF0
Length = 467
Score = 254 (94.5 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 59/162 (36%), Positives = 91/162 (56%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP +T+ EQ+ +++ F TS ARAYL+FK +D++
Sbjct: 37 TKIVIRRLPPTLTKEDLEEQLQPL--PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q+V K+ SKK D + GT+ D +Y +FLEF +
Sbjct: 95 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKVAKKRSKKKDAKSGTIDDDADYKKFLEFYN 154
Query: 127 KPVENLPS-AEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKR 167
E PS EI L TPL+DF++ K+
Sbjct: 155 GDEEKSPSNPEILLEEIEAKTKELSSKK--TTPLLDFLKNKQ 194
Score = 54 (24.1 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 330 RQNQASGLHSEQQISNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLHSEKQERRTRN 389
++ +A L ++ S +KD+ ++L+ K + D +KQ+R +
Sbjct: 229 KRKEAEKLKKVEKASEKDKDQHKDEQPKIKLLRKPEKADDGEAEKPKD-KPKKQDRERQK 287
Query: 390 KDRP 393
+DRP
Sbjct: 288 EDRP 291
Score = 44 (20.5 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 20/89 (22%), Positives = 37/89 (41%)
Query: 308 KQNQRRENSGRIIRGILLNKDARQNQASGLHS-EQQISNLEKDKRPPRPSHVQLVMKDTN 366
++ +RR+ IR + R+ G ++ ++ +KDK +++
Sbjct: 333 RERERRQKEKERIRRQDEERRRRREHQDGENTYRKREEEGKKDKERVWEKRKNEHTGESS 392
Query: 367 GVSDDKVIVNDLHSEKQER--RTRNKDRP 393
G + + D E+ R R RNKDRP
Sbjct: 393 GSARPEKSSRDSKKEESARKDRLRNKDRP 421
>UNIPROTKB|Q2T9M5 [details] [associations]
symbol:UPF3B "UPF3 regulator of nonsense transcripts
homolog B (Yeast)" species:9913 "Bos taurus" [GO:0045727 "positive
regulation of translation" evidence=IEA] [GO:0035145 "exon-exon
junction complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045727 GO:GO:0035145 eggNOG:NOG251520
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 HOVERGEN:HBG059714 CTD:65109 EMBL:DAAA02067145
EMBL:DAAA02067146 EMBL:BC111353 IPI:IPI00698558
RefSeq:NP_001069879.1 UniGene:Bt.89290 SMR:Q2T9M5
Ensembl:ENSBTAT00000027792 GeneID:616181 KEGG:bta:616181
OMA:SCRDYRD NextBio:20900002 Uniprot:Q2T9M5
Length = 307
Score = 232 (86.7 bits), Expect = 6.0e-19, P = 6.0e-19
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E + S L TPL+ F++ K+ + R
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK-TTPLLSFLKNKQRMREEKR 215
>UNIPROTKB|F1NA07 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
EMBL:AADN02017912 IPI:IPI00818750 Ensembl:ENSGALT00000036566
Uniprot:F1NA07
Length = 440
Score = 235 (87.8 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 50/164 (30%), Positives = 89/164 (54%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 7 SKVVIRRLPPCLTKEQLEEQLHPL--PAHDYFEFCTADPSLYPHLYSRAYINFRNPEDIL 64
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE
Sbjct: 65 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYC 124
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E + A + TPL+++++ ++ K
Sbjct: 125 ADEEKI-CANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEK 167
Score = 47 (21.6 bits), Expect = 3.7e-18, Sum P(2) = 3.7e-18
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 370 DDKVIVNDLHSEKQERRTRNKDRP 393
+DK +D+ S+K+ R RNKDRP
Sbjct: 373 EDKC--DDMASKKE--RIRNKDRP 392
>ZFIN|ZDB-GENE-060721-2 [details] [associations]
symbol:upf3a "UPF3 regulator of nonsense transcripts
homolog A (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR012677 ZFIN:ZDB-GENE-060721-2
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028 EMBL:BX601644
EMBL:BC095761 IPI:IPI00929986 IPI:IPI00994670 RefSeq:NP_001189377.1
UniGene:Dr.91982 STRING:B0S733 Ensembl:ENSDART00000100728
Ensembl:ENSDART00000139608 GeneID:566608 KEGG:dre:566608 CTD:65110
eggNOG:NOG251520 GeneTree:ENSGT00390000017146 HOGENOM:HOG000230909
InParanoid:Q4VBI8 KO:K14328 NextBio:20888282 Bgee:B0S733
InterPro:IPR005120 Pfam:PF03467 Uniprot:B0S733
Length = 452
Score = 237 (88.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 53/165 (32%), Positives = 91/165 (55%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++++ E + +++ F S +RAY++FK PED++
Sbjct: 43 SKVVIRRLPPSLSKDQLQEHLSPL--PSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 100
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q+V K+ KKD + GT+ +DPEY FLE S
Sbjct: 101 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 160
Query: 127 KPVE-NLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E ++ + E L TPL+++++ K+ K
Sbjct: 161 CDEEKSMANPETLLGEIEAKTRELIAKR--TTPLLEYIKNKKLEK 203
Score = 44 (20.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 377 DLHSEKQERRTRNKDRP 393
D+ S K+ R RNKDRP
Sbjct: 387 DMGSRKE--RIRNKDRP 401
>UNIPROTKB|E1BZ48 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
EMBL:AADN02013623 IPI:IPI00819644 Ensembl:ENSGALT00000014041
ArrayExpress:E1BZ48 Uniprot:E1BZ48
Length = 478
Score = 236 (88.1 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 56/168 (33%), Positives = 90/168 (53%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++F+ ED++
Sbjct: 55 SKVVIRRLPPSLTREQLEEHLQPL--PEHDYFEFFANDSSLYPHVFSRAYINFRNQEDIV 112
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK D + GT+ DPEY +FLE S
Sbjct: 113 LFRDRFDGYVFVDHKGSEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYS 172
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E L S L TPL++F++ K+ + R
Sbjct: 173 ADDEKLTSTPETLLEEIEARNKELIAKK-TTPLLNFLKNKQRLREEKR 219
Score = 46 (21.3 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 371 DKVIVNDLHSEKQER-RTRNKDRP 393
+KV +D + +R R RNKDRP
Sbjct: 410 EKVTKDDKKEDTVKRDRIRNKDRP 433
>UNIPROTKB|F1NQA5 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR012677 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045727 GO:GO:0035145
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 CTD:65109 OMA:HLFARAY EMBL:AADN02013623
IPI:IPI00575279 RefSeq:XP_003641170.1 UniGene:Gga.22099
Ensembl:ENSGALT00000039073 GeneID:100858231 KEGG:gga:100858231
ArrayExpress:F1NQA5 Uniprot:F1NQA5
Length = 478
Score = 236 (88.1 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 56/168 (33%), Positives = 90/168 (53%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++F+ ED++
Sbjct: 55 SKVVIRRLPPSLTREQLEEHLQPL--PEHDYFEFFANDSSLYPHVFSRAYINFRNQEDIV 112
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK D + GT+ DPEY +FLE S
Sbjct: 113 LFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYS 172
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E L S L TPL++F++ K+ + R
Sbjct: 173 ADDEKLTSTPETLLEEIEARNKELIAKK-TTPLLNFLKNKQRLREEKR 219
Score = 46 (21.3 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 371 DKVIVNDLHSEKQER-RTRNKDRP 393
+KV +D + +R R RNKDRP
Sbjct: 410 EKVTKDDKKEDTVKRDRIRNKDRP 433
>UNIPROTKB|E1BV08 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] InterPro:IPR012677 GO:GO:0005886
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045727
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
OMA:PDRGKKG EMBL:AADN02017912 IPI:IPI00576551
Ensembl:ENSGALT00000027147 Uniprot:E1BV08
Length = 476
Score = 235 (87.8 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 50/164 (30%), Positives = 89/164 (54%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 67 SKVVIRRLPPCLTKEQLEEQLHPL--PAHDYFEFCTADPSLYPHLYSRAYINFRNPEDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE
Sbjct: 125 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYC 184
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E + A + TPL+++++ ++ K
Sbjct: 185 ADEEKI-CANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEK 227
Score = 47 (21.6 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 370 DDKVIVNDLHSEKQERRTRNKDRP 393
+DK +D+ S+K+ R RNKDRP
Sbjct: 417 EDKC--DDMASKKE--RIRNKDRP 436
>UNIPROTKB|E2R5F4 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
OMA:PDRGKKG EMBL:AAEX03013416 Ensembl:ENSCAFT00000010502
Uniprot:E2R5F4
Length = 463
Score = 239 (89.2 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 50/164 (30%), Positives = 89/164 (54%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 67 SKVVIRRLPPGLTKEQLEEQLHPL--PAHDYFEFFPADLSLYPHLYSRAYINFRNPEDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E P+ + TPL++++R ++ K
Sbjct: 185 VEEEK-PNTNPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEK 227
>UNIPROTKB|J9NUU8 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
EMBL:AAEX03026831 Ensembl:ENSCAFT00000049933 Uniprot:J9NUU8
Length = 457
Score = 232 (86.7 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E + S L TPL+ F++ K+ + R
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK-TTPLLSFLKNKQRMREEKR 215
Score = 45 (20.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 21/92 (22%), Positives = 45/92 (48%)
Query: 308 KQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQ-LVMKDTN 366
K+ +RE + ++ + L N + Q+ L ++ KD++P RP ++ +
Sbjct: 280 KELDKREKAKKLDKENL-NDERASGQSCTL--PKRSDGEPKDEKPRRPEEESGRDYRERD 336
Query: 367 GVSDDKVIVND---LHSEKQERRTRNKDRPDR 395
D + I+ + L +++ERR R K+R ++
Sbjct: 337 YERDQERILRERERLKRQEEERR-RQKERYEK 367
Score = 40 (19.1 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 327 KDARQNQASGLHSEQQISNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLH-SEKQER 385
++ R+ Q E+ E++ + + V++D ++ V +EK+E
Sbjct: 355 EEERRRQKERYEKEKAFKRKEEEMKKEKE-----VVRDKGKKTESTESVGSSEKTEKKEE 409
Query: 386 -----RTRNKDRP 393
R RNKDRP
Sbjct: 410 VVKRDRIRNKDRP 422
>UNIPROTKB|F1PPT4 [details] [associations]
symbol:UPF3B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 CTD:65109 OMA:HLFARAY EMBL:AAEX03026831
RefSeq:XP_851843.1 ProteinModelPortal:F1PPT4
Ensembl:ENSCAFT00000029261 GeneID:481031 KEGG:cfa:481031
Uniprot:F1PPT4
Length = 481
Score = 232 (86.7 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E + S L TPL+ F++ K+ + R
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK-TTPLLSFLKNKQRMREEKR 215
Score = 45 (20.9 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 21/92 (22%), Positives = 45/92 (48%)
Query: 308 KQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQ-LVMKDTN 366
K+ +RE + ++ + L N + Q+ L ++ KD++P RP ++ +
Sbjct: 293 KELDKREKAKKLDKENL-NDERASGQSCTL--PKRSDGEPKDEKPRRPEEESGRDYRERD 349
Query: 367 GVSDDKVIVND---LHSEKQERRTRNKDRPDR 395
D + I+ + L +++ERR R K+R ++
Sbjct: 350 YERDQERILRERERLKRQEEERR-RQKERYEK 380
Score = 40 (19.1 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 327 KDARQNQASGLHSEQQISNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLH-SEKQER 385
++ R+ Q E+ E++ + + V++D ++ V +EK+E
Sbjct: 368 EEERRRQKERYEKEKAFKRKEEEMKKEKE-----VVRDKGKKTESTESVGSSEKTEKKEE 422
Query: 386 -----RTRNKDRP 393
R RNKDRP
Sbjct: 423 VVKRDRIRNKDRP 435
>UNIPROTKB|Q9BZI7 [details] [associations]
symbol:UPF3B "Regulator of nonsense transcripts 3B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;IMP;TAS] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR012677 GO:GO:0005829 GO:GO:0005654
GO:GO:0000184 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 Orphanet:777 GO:GO:0006406 GO:GO:0045727
GO:GO:0000398 Reactome:REACT_1788 Orphanet:323 GO:GO:0035145
PDB:2XB2 PDBsum:2XB2 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
EMBL:CH471161 Orphanet:776 GO:GO:0005487 eggNOG:NOG251520
HOGENOM:HOG000230909 KO:K14328 InterPro:IPR005120 Pfam:PF03467
HOVERGEN:HBG059714 EMBL:AY013251 EMBL:AF318576 EMBL:BC121017
IPI:IPI00023409 IPI:IPI00074183 RefSeq:NP_075386.1
RefSeq:NP_542199.1 UniGene:Hs.103832 PDB:1UW4 PDBsum:1UW4
ProteinModelPortal:Q9BZI7 SMR:Q9BZI7 DIP:DIP-31143N IntAct:Q9BZI7
MINT:MINT-265168 STRING:Q9BZI7 PhosphoSite:Q9BZI7 DMDM:60390643
PaxDb:Q9BZI7 PRIDE:Q9BZI7 Ensembl:ENST00000276201
Ensembl:ENST00000345865 GeneID:65109 KEGG:hsa:65109 UCSC:uc004erz.2
UCSC:uc004esa.2 CTD:65109 GeneCards:GC0XM118967 HGNC:HGNC:20439
HPA:HPA001800 HPA:HPA001882 MIM:300298 MIM:300676
neXtProt:NX_Q9BZI7 PharmGKB:PA128394708 InParanoid:Q9BZI7
OMA:HLFARAY OrthoDB:EOG4001K9 PhylomeDB:Q9BZI7 ChiTaRS:UPF3B
EvolutionaryTrace:Q9BZI7 GenomeRNAi:65109 NextBio:67302
ArrayExpress:Q9BZI7 Bgee:Q9BZI7 CleanEx:HS_UPF3B
Genevestigator:Q9BZI7 GermOnline:ENSG00000125351 Uniprot:Q9BZI7
Length = 483
Score = 232 (86.7 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E + S L TPL+ F++ K+ + R
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK-TTPLLSFLKNKQRMREEKR 215
Score = 44 (20.5 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 20/93 (21%), Positives = 41/93 (44%)
Query: 308 KQNQRRENSGRIIRG---ILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQLVMKD 364
++ + + RI+R + ++ R+ Q E+ E++ + + + L K
Sbjct: 348 REREYERDQERILRERERLKRQEEERRRQKERYEKEKTFKRKEEEMKKEKDT---LRDKG 404
Query: 365 TNGVSDDKVIVNDLHSEKQE---R-RTRNKDRP 393
S + + ++ +K+E R R RNKDRP
Sbjct: 405 KKAESTESIGSSEKTEKKEEVVKRDRIRNKDRP 437
>UNIPROTKB|F1RUA3 [details] [associations]
symbol:LOC414433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR012677 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045727 GO:GO:0035145
GeneTree:ENSGT00390000017146 KO:K14328 InterPro:IPR005120
Pfam:PF03467 OMA:HLFARAY EMBL:CU929805 RefSeq:XP_003135388.1
UniGene:Ssc.22179 Ensembl:ENSSSCT00000013796 GeneID:414433
KEGG:ssc:414433 Uniprot:F1RUA3
Length = 470
Score = 232 (86.7 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E + S L TPL+ F++ K+ + R
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK-TTPLLSFLKNKQRMREEKR 215
Score = 43 (20.2 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 347 EKDKRPPRPSHVQLVMKDTNGVSDDKVIVND---LHSEKQERRTRNKDRPDR 395
EK KRP S ++ + D + I+ + L +++ERR R K+R ++
Sbjct: 319 EKPKRPEDESSRDYRERERDYERDQERILRERERLKRQEEERR-RQKERYEK 369
Score = 41 (19.5 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 303 SSPALKQNQR--RENSGRIIRG---ILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSH 357
SS ++ +R + RI+R + ++ R+ Q E+ E++ + + +
Sbjct: 328 SSRDYRERERDYERDQERILRERERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKEA- 386
Query: 358 VQLVMKDTNGVSDDKVIVNDLHSEKQE---R-RTRNKDRP 393
++ K T S + V ++ +K+E R R RNKDRP
Sbjct: 387 LRDKAKKTE--STEPVGSSEKTEKKEEVVKRDRIRNKDRP 424
>UNIPROTKB|K7GSB3 [details] [associations]
symbol:LOC414433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 Gene3D:3.30.70.330 GeneTree:ENSGT00390000017146
InterPro:IPR005120 Pfam:PF03467 EMBL:CU929805 GeneID:414433
RefSeq:XP_003135389.1 Ensembl:ENSSSCT00000035250 Uniprot:K7GSB3
Length = 483
Score = 232 (86.7 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKAGPR 174
E + S L TPL+ F++ K+ + R
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK-TTPLLSFLKNKQRMREEKR 215
Score = 43 (20.2 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 347 EKDKRPPRPSHVQLVMKDTNGVSDDKVIVND---LHSEKQERRTRNKDRPDR 395
EK KRP S ++ + D + I+ + L +++ERR R K+R ++
Sbjct: 332 EKPKRPEDESSRDYRERERDYERDQERILRERERLKRQEEERR-RQKERYEK 382
Score = 41 (19.5 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 303 SSPALKQNQR--RENSGRIIRG---ILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSH 357
SS ++ +R + RI+R + ++ R+ Q E+ E++ + + +
Sbjct: 341 SSRDYRERERDYERDQERILRERERLKRQEEERRRQKERYEKEKAFKRKEEEMKKEKEA- 399
Query: 358 VQLVMKDTNGVSDDKVIVNDLHSEKQE---R-RTRNKDRP 393
++ K T S + V ++ +K+E R R RNKDRP
Sbjct: 400 LRDKAKKTE--STEPVGSSEKTEKKEEVVKRDRIRNKDRP 437
>UNIPROTKB|I3LNG6 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
Ensembl:ENSSSCT00000030947 OMA:SSCRSAG Uniprot:I3LNG6
Length = 333
Score = 222 (83.2 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 50/166 (30%), Positives = 90/166 (54%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVVVR LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 63 SKVVVRRLPPSLTREQLEEQLQPL--PAHDYFEFFTADLSLYPHLYSRAYINFRNPDDIL 120
Query: 68 EFAEFFNGHVFVNEK--GVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLEF 124
F + F+G++F++ K G+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE
Sbjct: 121 LFRDRFDGYIFIDSKVKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYKKFLET 180
Query: 125 ISKPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E SA + TPL+++++ ++ K
Sbjct: 181 YCVEEEKA-SANPETLLGDVEAKTRELIARRTTPLLEYIKNRKLEK 225
>RGD|1308778 [details] [associations]
symbol:Upf3a "UPF3 regulator of nonsense transcripts homolog A
(yeast)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0045727 "positive regulation of translation"
evidence=IEA;ISO] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0035145 "exon-exon junction complex"
evidence=ISO] InterPro:IPR012677 RGD:1308778 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH473970 CTD:65110 eggNOG:NOG251520
GeneTree:ENSGT00390000017146 HOGENOM:HOG000230909 KO:K14328
InterPro:IPR005120 Pfam:PF03467 HOVERGEN:HBG059714
OrthoDB:EOG4DNF53 EMBL:BC088463 IPI:IPI00951718
RefSeq:NP_001012159.1 UniGene:Rn.56460 SMR:Q5I0C8 STRING:Q5I0C8
Ensembl:ENSRNOT00000066521 GeneID:361176 KEGG:rno:361176
UCSC:RGD:1308778 InParanoid:Q5I0C8 NextBio:675441
Genevestigator:Q5I0C8 Uniprot:Q5I0C8
Length = 405
Score = 226 (84.6 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 49/164 (29%), Positives = 88/164 (53%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW-SKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G++F+ KG+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE S
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E SA + TPL+++++ ++ K
Sbjct: 184 LEEEKT-SASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEK 226
>UNIPROTKB|D4A7D0 [details] [associations]
symbol:Upf3a "Protein Upf3a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 RGD:1308778 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045727 InterPro:IPR005120 Pfam:PF03467
IPI:IPI00364680 Ensembl:ENSRNOT00000023552 ArrayExpress:D4A7D0
Uniprot:D4A7D0
Length = 406
Score = 226 (84.6 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 49/164 (29%), Positives = 88/164 (53%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW-SKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G++F+ KG+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE S
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E SA + TPL+++++ ++ K
Sbjct: 184 LEEEKT-SASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEK 226
>UNIPROTKB|Q9H1J1 [details] [associations]
symbol:UPF3A "Regulator of nonsense transcripts 3A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0000184 "nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay"
evidence=IDA;NAS;TAS] [GO:0005737 "cytoplasm" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=NAS] [GO:0035145
"exon-exon junction complex" evidence=IDA;TAS] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=NAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR012677 GO:GO:0005829 GO:GO:0005886
GO:GO:0005634 GO:GO:0010467 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471085 GO:GO:0045727
GO:GO:0051028 EMBL:AL160396 GO:GO:0005487 CTD:65110
eggNOG:NOG251520 KO:K14328 InterPro:IPR005120 Pfam:PF03467
EMBL:AY013250 EMBL:BC008694 EMBL:BC023569 EMBL:AF318575
IPI:IPI00011138 IPI:IPI00082830 IPI:IPI00552066 RefSeq:NP_075387.1
RefSeq:NP_542418.1 UniGene:Hs.533855 PDB:2L08 PDBsum:2L08
ProteinModelPortal:Q9H1J1 SMR:Q9H1J1 DIP:DIP-31146N IntAct:Q9H1J1
MINT:MINT-1417517 STRING:Q9H1J1 PhosphoSite:Q9H1J1 DMDM:60390646
PaxDb:Q9H1J1 PRIDE:Q9H1J1 Ensembl:ENST00000351487
Ensembl:ENST00000375299 GeneID:65110 KEGG:hsa:65110 UCSC:uc001vup.3
UCSC:uc001vuq.3 GeneCards:GC13P115047 HGNC:HGNC:20332 HPA:HPA018325
MIM:605530 neXtProt:NX_Q9H1J1 PharmGKB:PA134961553
HOVERGEN:HBG059714 InParanoid:Q9H1J1 OMA:PDRGKKG OrthoDB:EOG4DNF53
PhylomeDB:Q9H1J1 ChiTaRS:UPF3A EvolutionaryTrace:Q9H1J1
GenomeRNAi:65110 NextBio:67308 ArrayExpress:Q9H1J1 Bgee:Q9H1J1
CleanEx:HS_UPF3A Genevestigator:Q9H1J1 GermOnline:ENSG00000169062
Uniprot:Q9H1J1
Length = 476
Score = 228 (85.3 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 49/164 (29%), Positives = 89/164 (54%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
E SA + TPL+++++ ++ K
Sbjct: 186 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 228
>UNIPROTKB|E1BGC9 [details] [associations]
symbol:UPF3A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
GO:GO:0005886 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045727
GeneTree:ENSGT00390000017146 InterPro:IPR005120 Pfam:PF03467
OMA:PDRGKKG EMBL:DAAA02034959 IPI:IPI00691542
Ensembl:ENSBTAT00000027791 Uniprot:E1BGC9
Length = 510
Score = 217 (81.4 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 48/167 (28%), Positives = 92/167 (55%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQLHPL--PAHDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAEFFNGHVFVNEK--GVQFKTIVEYAPSQRVPKQ-WSKKDGREGTLLKDPEYLEFLE- 123
F + F+G++F++ K G+++ +VE+AP Q++ K+ KKD + G++ DPEY +FLE
Sbjct: 125 LFRDRFDGYIFIDSKVKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLET 184
Query: 124 FISKPVENLPSAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
+ + + S E L TPL+++++ ++ K
Sbjct: 185 YCVEEEKTSVSPETLLGDIEAKTRELIARR--TTPLLEYIKNRKLEK 229
Score = 41 (19.5 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 350 KRPPRPSHVQLVMKDTNGVSDD--KVIVNDLHSEKQ--ERRTRNKD 391
K P PS V L K G ++ + ND E++ ERR+R K+
Sbjct: 308 KWEPCPSAVVLKPKPPEGSLEELRERSQNDSDKEQRDKERRSREKE 353
Score = 39 (18.8 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 383 QERRTRNKDRP 393
++ RT NKDRP
Sbjct: 424 RKERTGNKDRP 434
>POMBASE|SPAC13G7.03 [details] [associations]
symbol:upf3 "up-frameshift suppressor 3 family protein
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO]
InterPro:IPR012677 PomBase:SPAC13G7.03 GO:GO:0005737 EMBL:CU329670
GO:GO:0005730 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
KO:K14328 InterPro:IPR005120 Pfam:PF03467 EMBL:AB027925 PIR:S67432
RefSeq:NP_593705.1 ProteinModelPortal:Q10267
EnsemblFungi:SPAC13G7.03.1 GeneID:2542908 KEGG:spo:SPAC13G7.03
OrthoDB:EOG480N5F NextBio:20803947 Uniprot:Q10267
Length = 278
Score = 186 (70.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 40/115 (34%), Positives = 64/115 (55%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTS--QKHQSCARAYLDFKKPEDV 66
KV+V NLPP + + F + I+ +F W F +GK + + + + AYL F+ V
Sbjct: 13 KVLVFNLPPTLPEQVFLQSIN-SFLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 71
Query: 67 LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
EF + GH F+++K ++ IV AP Q++P K D EG+L +DP++ EF
Sbjct: 72 QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF 126
>FB|FBgn0034923 [details] [associations]
symbol:Upf3 "Upf3" species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IMP] [GO:0035195 "gene silencing by miRNA"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR012677 EMBL:AE013599 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GeneTree:ENSGT00390000017146 KO:K14328
InterPro:IPR005120 Pfam:PF03467 OMA:SRPSRAY FlyBase:FBgn0034923
RefSeq:NP_726375.1 UniGene:Dm.31014 ProteinModelPortal:Q9W1H3
SMR:Q9W1H3 IntAct:Q9W1H3 MINT:MINT-745473 STRING:Q9W1H3
EnsemblMetazoa:FBtr0072221 GeneID:37792 KEGG:dme:Dmel_CG11184
UCSC:CG11184-RB CTD:37792 InParanoid:Q9W1H3 PhylomeDB:Q9W1H3
GenomeRNAi:37792 NextBio:805430 ArrayExpress:Q9W1H3 Bgee:Q9W1H3
Uniprot:Q9W1H3
Length = 492
Score = 179 (68.1 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 40/125 (32%), Positives = 74/125 (59%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPE--DV 66
K+V+R+LPP +T+ F +Q+ G ++ + + + +C RAY+D + +V
Sbjct: 31 KIVMRHLPPTMTEAQFLDQV-GPLPENDSYYYCKADWSLGQEATC-RAYIDMSSKDIGEV 88
Query: 67 LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKD-GREGTLLKDPEYLEFLEFI 125
++F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ +P Y EF++ +
Sbjct: 89 VQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHYQEFIKRL 148
Query: 126 SKPVE 130
++ E
Sbjct: 149 AQERE 153
Score = 52 (23.4 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 383 QERRTRNKDRPDRAAW 398
+ERR RNKDRP A +
Sbjct: 405 EERRIRNKDRPSIAIY 420
Score = 42 (19.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 214 VLRDTAKNSSGKDKSTYILVPKRDDQDFDKPVSSSSATGSE----VVLEESGVPANSD 267
V RD K+ G+ K K+D QD KP S S+ V+L+++ P +++
Sbjct: 281 VKRDKKKDD-GQGKQD-----KQDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNE 332
Score = 40 (19.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 19/88 (21%), Positives = 33/88 (37%)
Query: 306 ALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQL-VMKD 364
A K+ +RRE + R R K + + L ++ S L++ + + KD
Sbjct: 185 ANKKEKRREEARR--RNEEKRKQREEQKLLRLAAQSDASKLKEAEGGGGGGDTKKPAKKD 242
Query: 365 TNGVSDDKVIVNDLHSEKQERRTRNKDR 392
ND + + +RRT R
Sbjct: 243 VKDPQSSGSQANDAKASRSKRRTERDQR 270
>ASPGD|ASPL0000056196 [details] [associations]
symbol:AN0505 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACD01000007 eggNOG:NOG251520 KO:K14328
InterPro:IPR005120 Pfam:PF03467 OrthoDB:EOG480N5F
RefSeq:XP_658109.1 ProteinModelPortal:Q5BG25
EnsemblFungi:CADANIAT00002182 GeneID:2876277 KEGG:ani:AN0505.2
HOGENOM:HOG000216582 OMA:SRPSRAY Uniprot:Q5BG25
Length = 590
Score = 144 (55.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 40/152 (26%), Positives = 72/152 (47%)
Query: 34 GRYNWVSFRQGKTSQKH--QSCA------RAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ 85
GR +W ++ GK S+ H S A RAYL E + ++ F++ +
Sbjct: 67 GRVSWAQYKPGKVSKDHGNHSPAKPSRPSRAYLYVVSSEHIAPLSDKVRSTSFLDARNTA 126
Query: 86 FKTIV------EYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQL 139
++ E+AP ++P +KD R GT+ +DPE+++FLE +++P+ AE
Sbjct: 127 NDPVLLGPPNLEFAPYAKIPGSRVRKDARLGTIDQDPEFIQFLESLTQPITKPTLAE--- 183
Query: 140 XXXXXXXXXXXXXXLIVTPLMDFVRQKRAAKA 171
+ TPL+ ++++K+A KA
Sbjct: 184 ---TSAEGEDKKETVTTTPLVQYIKEKKANKA 212
Score = 43 (20.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 16/49 (32%), Positives = 19/49 (38%)
Query: 441 NMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTHVKDDGSPVMSEGKP 489
N +SGE GG +SS G R G+ G GS S P
Sbjct: 533 NGKSGEGTGGGGSGGGNSSSGRG-RRGRGKGGSKANGGGGSGTTSANAP 580
>RGD|1560264 [details] [associations]
symbol:Upf3b "UPF3 regulator of nonsense transcripts homolog B
(yeast)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0035145 "exon-exon junction complex"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] InterPro:IPR012677 RGD:1560264 GO:GO:0000166
Gene3D:3.30.70.330 InterPro:IPR005120 Pfam:PF03467 IPI:IPI00948629
Ensembl:ENSRNOT00000063958 UCSC:RGD:1560264 ArrayExpress:D4A9C4
Uniprot:D4A9C4
Length = 250
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
F + F+G+ E+ ++ + ++ +R +Q ++ +E + E ++
Sbjct: 109 LFRDRFDGYELDQERMIRERERMKRQEEERRRQQQKERYEKEKAFKRKEEEMK 161
>WB|WBGene00004882 [details] [associations]
symbol:smg-4 species:6239 "Caenorhabditis elegans"
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IGI] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0030539 "male genitalia
development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] InterPro:IPR012677 GO:GO:0005634
GO:GO:0048471 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030539 GO:GO:0040035 GeneTree:ENSGT00390000017146 KO:K14328
InterPro:IPR005120 Pfam:PF03467 EMBL:Z70780 GeneID:179371
KEGG:cel:CELE_F46B6.3 CTD:179371 HOGENOM:HOG000021649
NextBio:905120 RefSeq:NP_741600.1 ProteinModelPortal:Q8WQF3
SMR:Q8WQF3 STRING:Q8WQF3 PRIDE:Q8WQF3 EnsemblMetazoa:F46B6.3b
WormBase:F46B6.3b InParanoid:Q8WQF3 OMA:FCKKLEE ArrayExpress:Q8WQF3
Uniprot:Q8WQF3
Length = 368
Score = 118 (46.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 44/168 (26%), Positives = 73/168 (43%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED-VL 67
KVV+R LP +T+ EQI F S + A ++F + D ++
Sbjct: 10 KVVLRRLPKYMTEHEVLEQIS-PLPEEVIGTYFHPANFSFDRCAYATLTVNFSEYCDSMM 68
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPK---QWSKKDGREGTLLKDPEYLEFLEF 124
EF F+G++FV+ +G +VE A +Q K K+D R G +L D YL+F +
Sbjct: 69 EFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYYLDFCKK 128
Query: 125 ISKPVENLP--SAEIQLXXXXXXXXXXXXXXLIVTPLMDFVRQKRAAK 170
+ + +P + E Q+ + TPL+ + +K K
Sbjct: 129 LEEE-RAIPILTLEQQIRKLNQPDDARTQIDKMETPLVKYFFEKETGK 175
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 308 KQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDK--RPPRPSHVQLV 361
KQ+ +R+ I + L++ ++++ + + +K++ +PPRPS + V
Sbjct: 245 KQDAKRKERNMIRKQKFLDEKKKKHEEREQDGPRVPRDKKKERLAKPPRPSPAKTV 300
Score = 39 (18.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 460 VDNGSHRHIGRR--GPTHVKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQK 509
+D +H R GP +D ++ KP R A G + + W++K
Sbjct: 262 LDEKKKKHEEREQDGPRVPRDKKKERLA--KPPRPSPAKTVGEQQGEDWIKK 311
>CGD|CAL0003622 [details] [associations]
symbol:orf19.5277 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR012677 CGD:CAL0003622
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000070
EMBL:AACQ01000071 KO:K14328 InterPro:IPR005120 Pfam:PF03467
RefSeq:XP_716346.1 RefSeq:XP_716408.1 ProteinModelPortal:Q5A3J3
GeneID:3641971 GeneID:3642005 KEGG:cal:CaO19.12742
KEGG:cal:CaO19.5277 eggNOG:NOG147498 Uniprot:Q5A3J3
Length = 407
Score = 106 (42.4 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 41/145 (28%), Positives = 68/145 (46%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS---FRQG---KTSQKHQSCARAYLDFKK 62
K V+R LPP++T+ F Q+ + + + + QG KT+ + +RAY++F
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKICQFYYIQGHYPKTNFEVPIYSRAYVNFSN 109
Query: 63 PEDVLEFAEFFNGHVFVNE---------KGVQFKTIVEYA-PSQRVPKQWSKKDGREGTL 112
D LEF F F NE K + K + A SQ+ K+ SKK+ + L
Sbjct: 110 QHDSLEFLNFLKEKPFENEFDSIIPVIEKALFHKMVDTSANTSQKTLKE-SKKNLKRDDL 168
Query: 113 LKDPEYLEFLEFISKPVENLPSAEI 137
+ + Y +FL FI+ ++ +I
Sbjct: 169 VNNEIYKKFLMFINNEIDQFDLIKI 193
Score = 53 (23.7 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 22/95 (23%), Positives = 40/95 (42%)
Query: 303 SSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQLVM 362
SS K+ + +++S + K ++++ ++ EK K S + V
Sbjct: 212 SSKERKKLKAKKSSKEKATTVSREKSKEKDKSKEKTKDKGKEKPEKSKNGEDVSKDKSVN 271
Query: 363 KDTNGVSDDKVIVNDLHSEKQERRTRN-KDRPDRA 396
KDT G D K+ S+ + T+ K RP R+
Sbjct: 272 KDTKGQEDVKLSKKSNGSKSTDEGTKEIKKRPRRS 306
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.131 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 514 419 0.00082 118 3 11 23 0.47 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 610 (65 KB)
Total size of DFA: 247 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.63u 0.09s 34.72t Elapsed: 00:00:02
Total cpu time: 34.64u 0.09s 34.73t Elapsed: 00:00:02
Start: Tue May 21 06:45:55 2013 End: Tue May 21 06:45:57 2013