BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010224
(514 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224129726|ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|222839085|gb|EEE77436.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/524 (68%), Positives = 420/524 (80%), Gaps = 18/524 (3%)
Query: 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
G D+TKVVVR+LPP I+QP F EQID AF GRYNW+S+R G SQKHQS +RAY+DFK+
Sbjct: 5 GQSDKTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQKHQSYSRAYIDFKR 64
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFL 122
PEDV++FAEFFNGH+FVNEKG QFK IVEY+PSQRVPKQWSKKDGREGT+ KDPEYLEFL
Sbjct: 65 PEDVIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEYLEFL 124
Query: 123 EFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKL 182
E I+KPVENLPSAEIQLERREAERAGAAK+A IVTPLMDFVRQKR AK GPRR+LSNGKL
Sbjct: 125 ELIAKPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRILSNGKL 184
Query: 183 SRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQDFD 242
SRRA GS + +S S KRGS+KK+ STTMYVLRDTAK++SGKDKSTY+ VPKRDDQ
Sbjct: 185 SRRAGGSGSP--SSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQLS 242
Query: 243 KPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASV--KT 300
V+ S +G+ V+ +ES V +D GKKK+LLLKGKE+EIS V+G++S QQS S +
Sbjct: 243 NAVTLGSGSGTAVLEDESVVSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDRN 302
Query: 301 IISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQI--SNLEKDKRPPRPSHV 358
IISS ALK +QRRE SGR+IR ILLNKD+R ++SG+HSE Q+ SNLEK+KRPPRP H
Sbjct: 303 IISSTALK-SQRRETSGRMIRSILLNKDSRHIRSSGVHSEPQMQTSNLEKEKRPPRPPHA 361
Query: 359 QLVMKDTNGVSDDKVIVNDLH---SEKQERRTRNKDRPDRAAWT-LRRSDGSYQSDESLS 414
QL +KD NG DDKV+ NDLH +EKQE+RTRNKDRPDR WT LRRSDGSY SDESL
Sbjct: 362 QLGLKDANGTPDDKVVGNDLHGFPNEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESLL 421
Query: 415 SSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPT 474
SSASQ + S DSS+GN GD K D N+RSGEVK +G GR +HSS+DNGSH+H GRRGP+
Sbjct: 422 SSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSGRGNHSSLDNGSHKHFGRRGPS 481
Query: 475 HVKDDGSPVMSEGKPLRRGGASGYGSHE-------KQVWVQKSS 511
H+ D E K +RGG+SGYGSHE KQVWVQKS+
Sbjct: 482 HIVRDADGSTVEAKTPKRGGSSGYGSHEVCSLDSQKQVWVQKST 525
>gi|297739512|emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/522 (68%), Positives = 418/522 (80%), Gaps = 13/522 (2%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKGPLDRTKVVVR+LPP I++ AF EQID F GRY V FR GK SQK QS +RAYLDF
Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAEFF+GHVFVNEKG QFKTIVEYAPSQR+PK W KKDGREGT+ KDPEY+E
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYME 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
F+E ++KPVENLPSAEIQLERREAERAGA K+ IVTPLMDFVRQKRAAK RR LSNG
Sbjct: 121 FVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRRSLSNG 180
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
KLSRRASGSS+G+P+ GSSKRGS+K++ STTMYVLRDTAK++S KDKST+ILVPKRDDQ
Sbjct: 181 KLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKSTSAKDKSTFILVPKRDDQL 240
Query: 241 F-DKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVK 299
DK V+ ++ G+E + EESGV D GKKKVLLLKGKEREIS + ++ VK
Sbjct: 241 LSDKSVNLAAGGGAEALEEESGVSGAVDAGKKKVLLLKGKEREISH--HLLQQNVTSPVK 298
Query: 300 TIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQ--QISNLEKDKRPPRPSH 357
I+ + A KQNQRRE SGRIIR ILLNKDARQ+Q+S +EQ Q SNLEK+KRPPRP H
Sbjct: 299 NILGANAPKQNQRREGSGRIIRSILLNKDARQSQSSMFQTEQQSQASNLEKEKRPPRPPH 358
Query: 358 VQLVMKDTNGVSDDKVIVNDLH---SEKQERRTRNKDRPDRAAWT-LRRSDGSYQSDESL 413
+QL K+TNG DDKV+ ND+H SEKQ++RTRNKDRPDR WT LRRSDGS+ S
Sbjct: 359 IQLASKETNGAQDDKVVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHAS--DE 416
Query: 414 SSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGP 473
S S+S ++ D EG+ G+ + D+SN RSGEVKA+G GR HS++DNGSH+H GRRGP
Sbjct: 417 SLSSSASQPTSSDFPEGSHGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSGRRGP 476
Query: 474 TH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSG 513
TH VKD DGS ++SEGK +RG A GYGSHEKQVWVQKSSSG
Sbjct: 477 THSVKDADGSSIVSEGKHSKRGSAPGYGSHEKQVWVQKSSSG 518
>gi|255570968|ref|XP_002526435.1| conserved hypothetical protein [Ricinus communis]
gi|223534215|gb|EEF35930.1| conserved hypothetical protein [Ricinus communis]
Length = 472
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 332/521 (63%), Positives = 382/521 (73%), Gaps = 61/521 (11%)
Query: 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
G ++TKVVVR+LPP I+Q +F EQID F GRYNWVSFR GK+SQKHQS +RAY+DFK+
Sbjct: 4 GQAEKTKVVVRHLPPTISQGSFLEQIDVVFSGRYNWVSFRPGKSSQKHQSYSRAYIDFKR 63
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFL 122
PEDV+EFAEFFNGH+FVNEKG QF+ IVEYAPSQ VPKQWSKKDGREGT++KDP YLEFL
Sbjct: 64 PEDVIEFAEFFNGHLFVNEKGTQFRAIVEYAPSQHVPKQWSKKDGREGTIVKDPAYLEFL 123
Query: 123 EFISKPVENLPSAEIQL-ERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGK 181
E ISKP ENLPSAEIQL R A AAK+A IVTPLMDFVRQKRAAK G R
Sbjct: 124 ELISKPAENLPSAEIQLERREAERAASAAKDAPIVTPLMDFVRQKRAAKTGSR------- 176
Query: 182 LSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQDF 241
YVLRD+AK++SGKDKSTY+LVPKRDDQ F
Sbjct: 177 -------------------------------YVLRDSAKSTSGKDKSTYLLVPKRDDQQF 205
Query: 242 -DKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVKT 300
DK +SA+G+EV+ +ES + + LL I Q+SG +S Q +AS
Sbjct: 206 SDKSTPFASASGTEVLEDESEL--------YHLCLL------IVQLSGGMSKQNAASFDK 251
Query: 301 IISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQI--SNLEKDKRPPRPSHV 358
++S A+KQ+QRRE+SGRIIR ILLNKD+RQNQ+SG SEQQI SNLEK+KR PRP+HV
Sbjct: 252 NVTSSAIKQSQRRESSGRIIRSILLNKDSRQNQSSGFQSEQQIQSSNLEKEKRLPRPAHV 311
Query: 359 QLVMKDTNGVSDDKVIVNDLH---SEKQERRTRNKDRPDRAAWT-LRRSDGSYQSDESLS 414
QLV+KD NG SDDK + NDLH EKQE+RTRNKDRPDR WT LRRSDGSY SDESLS
Sbjct: 312 QLVLKDVNGSSDDKFVGNDLHGFSGEKQEKRTRNKDRPDRVVWTPLRRSDGSYASDESLS 371
Query: 415 SSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPT 474
SSASQ + + DSS+GNLGD K D SN RSG+VK +G GRSSHSS+DNGSH+H GRRGP+
Sbjct: 372 SSASQSTHTGQDSSQGNLGDIKVDSSNSRSGDVKTLGSGRSSHSSLDNGSHKHFGRRGPS 431
Query: 475 HVKDDGSPVMSEGKPLRR-GGASGYGSHEKQVWVQKSSSGS 514
H D EGKP +R GGASGYGSHEKQVWVQKSSSGS
Sbjct: 432 HTVRDADGSSLEGKPSKRGGGASGYGSHEKQVWVQKSSSGS 472
>gi|356560129|ref|XP_003548348.1| PREDICTED: uncharacterized protein LOC100799816 [Glycine max]
Length = 508
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 325/524 (62%), Positives = 391/524 (74%), Gaps = 26/524 (4%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKG LDRTKVV+R+LPP+I++ A QID AF GRYNW+SFR GK SQKH S +RAY+DF
Sbjct: 1 MKGALDRTKVVLRHLPPSISEAALLAQIDAAFAGRYNWLSFRPGKISQKHISYSRAYIDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+ FAEFFNGHVFVNEKG QFK IVEYAPSQRVP+QWSKKDGR+GT+ KD EYLE
Sbjct: 61 KRPEDVILFAEFFNGHVFVNEKGSQFKVIVEYAPSQRVPRQWSKKDGRDGTIYKDSEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ++KPVENLPSAEIQLE+REAER+ + I+TPLMDFVRQKRAAK GPRRLLSNG
Sbjct: 121 FLELLAKPVENLPSAEIQLEKREAERS----DIPIITPLMDFVRQKRAAK-GPRRLLSNG 175
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
K+S+RA SS GSP+S +S+RGS KK+ S TMYV RD KNS+ KDKST LVPK+ DQ
Sbjct: 176 KVSQRAGTSSNGSPSSVTSRRGSGKKRVSATMYVARDPGKNSTIKDKST--LVPKQGDQH 233
Query: 241 FDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSG----SVSHQQSA 296
S+ +++ + + L+E+GV N D GKKKVLLLKGKEREI VS S H ++
Sbjct: 234 LSDKASNMASSDANLTLDENGVSGNHDAGKKKVLLLKGKEREIITVSDLDSMSQHHNVTS 293
Query: 297 SVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQI--SNLEKDKRPPR 354
S K I+ S LKQ+QR E SGRIIR IL K+ RQ+Q S SEQQI SNLEK+K+PPR
Sbjct: 294 SAKMIVGSTVLKQSQRHEGSGRIIRSILSKKELRQSQYSRALSEQQIQTSNLEKEKQPPR 353
Query: 355 PSHVQLVMKDTNGVSDDKVIVNDLH--SEKQERRTRNKDRPDRAAWTLRRSDGSYQSDES 412
P HVQL++K +NG ++K+ V+D H SE+QER R+KDRPDR WT RS+G+
Sbjct: 354 PLHVQLILKGSNGTPENKIGVHDSHVSSERQERHVRHKDRPDRGVWT-SRSNGA------ 406
Query: 413 LSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRG 472
S S + S VD EG+ D K D N RSGEVK++G R+SHSS +NG ++H GRRG
Sbjct: 407 -DDSFSSSASSQVDPLEGSHADLKHDTPNARSGEVKSLGSVRTSHSS-ENGFNKHFGRRG 464
Query: 473 PTH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
P+H VKD DG V SEGK RR S YGS+EKQVWVQK+SSG+
Sbjct: 465 PSHGVKDVDGYSVSSEGKHPRRSSTSAYGSNEKQVWVQKASSGT 508
>gi|356543385|ref|XP_003540141.1| PREDICTED: uncharacterized protein LOC100798866 [Glycine max]
Length = 510
Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 321/524 (61%), Positives = 388/524 (74%), Gaps = 24/524 (4%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKG LDRTKVV+R+LPP+I++ A QID AF GRYNW+SFR GK SQKH S +RAY+DF
Sbjct: 1 MKGALDRTKVVLRHLPPSISEAALLSQIDAAFAGRYNWLSFRPGKISQKHMSFSRAYIDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+ FAEFFNGHVFVN KG QFK IVEYAPSQRVP+QWSKKD R+GT+ KD EYLE
Sbjct: 61 KRPEDVILFAEFFNGHVFVNVKGSQFKVIVEYAPSQRVPRQWSKKDLRDGTIYKDSEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ++KPVENLPSAEIQLE+REAER+ + I+TPLMDFVRQKRAAK GPRR LSNG
Sbjct: 121 FLELLAKPVENLPSAEIQLEKREAERS----DIPIITPLMDFVRQKRAAK-GPRRPLSNG 175
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
K+SRRA SS G P+S +S+RGS KK+ S TMYV RD K+S+ KDKS+Y LVPK+DDQ
Sbjct: 176 KVSRRAGTSSNGGPSSATSRRGSGKKRVSATMYVARDPGKSSTIKDKSSYTLVPKQDDQH 235
Query: 241 FDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSG----SVSHQQSA 296
S+ +++ L+E+GV N D GKKKVLLLKGKEREI VS S H ++
Sbjct: 236 LPNKASNMASSDGNQTLDENGVSGNHDAGKKKVLLLKGKEREIITVSDLDSMSQHHNVTS 295
Query: 297 SVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQI--SNLEKDKRPPR 354
S KT++ S LKQ+QR E SGRIIR IL K+ Q+Q+S SEQ+I SNLEK+K+PPR
Sbjct: 296 SAKTVVGSTVLKQSQRHEGSGRIIRSILSKKELHQSQSSRALSEQKILTSNLEKEKQPPR 355
Query: 355 PSHVQLVMKDTNGVSDDKVIVNDLH--SEKQERRTRNKDRPDRAAWTLRRSDGSYQSDES 412
P HVQL++K +NG ++K+ V+D H SE+QER R+KDRPDR WT R + +D S
Sbjct: 356 PLHVQLILKGSNGTPENKIGVHDSHVSSERQERHVRHKDRPDRGVWTSRFNG----ADVS 411
Query: 413 LSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRG 472
SS AS S VD EG+ D K D+ N RS EVK+ G R+SHSS +NG ++H GRRG
Sbjct: 412 FSSPAS----SQVDPLEGSQADLKHDMPNARSVEVKSFGSVRTSHSS-ENGFNKHFGRRG 466
Query: 473 PTH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
P++ VKD DG V SEGK RR S YGS+EKQVWVQK+SSGS
Sbjct: 467 PSYGVKDVDGYSVSSEGKHPRRSSTSAYGSNEKQVWVQKASSGS 510
>gi|92893882|gb|ABE91932.1| Nonsense-mediated decay UPF3 [Medicago truncatula]
Length = 500
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 272/511 (53%), Positives = 352/511 (68%), Gaps = 28/511 (5%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
DRTKVV+R+LPP ITQ + ID +F GRYNW SF K + H +RAY+DF P+D
Sbjct: 3 DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDD 61
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK--DGREGTLLKDPEYLEFLE 123
V++FA FFNGH+F+N+KG FK VEYAPSQRVP SKK D R+GT+ KDP+YL+FL+
Sbjct: 62 VIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQ 121
Query: 124 FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPR----RLLSN 179
I+KPVENLPSAEIQL++REA R K+ IVTPLMDFVR KRA K GPR R LSN
Sbjct: 122 QIAKPVENLPSAEIQLDKREAVR----KDIPIVTPLMDFVRHKRATKNGPRQQQHRSLSN 177
Query: 180 GKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
GK++RR+ +S GS S S+RG K + STTMYV RD K+S+ +DKSTYILVP++ DQ
Sbjct: 178 GKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQ 237
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQV--SGSVSHQQSAS 297
+ S+++++ +E+G+ ++D GKKK+LLLKG ERE V S S+S ++S
Sbjct: 238 NPSNKSSNTASSDGNQTFDENGIAGSNDSGKKKLLLLKGNERETITVSDSDSMSQHHTSS 297
Query: 298 VKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQI--SNLEKDKRPPRP 355
KTI+SS ALKQNQR E GRII+ IL NKD RQ+Q+S HSE+QI SNLE++K+ RP
Sbjct: 298 TKTILSSTALKQNQRHEGRGRIIKSILTNKDFRQSQSSRAHSERQIQTSNLEREKQSTRP 357
Query: 356 SHVQLVMKDTNGVSDDKVIVNDLH--SEKQERRTRNKDRPDRAAWTLRRSDGSYQSDESL 413
HVQL++K T+G ++++ V+ LH SE+QERR R+KDRPDR WT R +
Sbjct: 358 VHVQLILKGTDGAPENRITVHGLHVSSERQERRFRHKDRPDRGVWTSRSN--------GG 409
Query: 414 SSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGP 473
S S + S VD EG + K D + RSGEVK++G R+SHSS +NG +H GRRGP
Sbjct: 410 GESLSSSASSQVDPLEGGHTELKHDTPSARSGEVKSLGSFRASHSS-ENGFSKHFGRRGP 468
Query: 474 TH-VKD-DGSPVMSEGKPLRRGGASGYGSHE 502
+ VKD DG ++SEGK R+ S YGS+E
Sbjct: 469 IYGVKDVDGYSILSEGKHPRKSSTSAYGSNE 499
>gi|357445255|ref|XP_003592905.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481953|gb|AES63156.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 565
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 264/540 (48%), Positives = 346/540 (64%), Gaps = 57/540 (10%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
DRTKVV+R+LPP ITQ + ID +F GRYNW SF K + H +RAY+DF P+D
Sbjct: 3 DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDD 61
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK--DGREGTLLKDPEYLEFLE 123
V++FA FFNGH+F+N+KG FK VEYAPSQRVP SKK D R+GT+ KDP+YL+FL+
Sbjct: 62 VIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQ 121
Query: 124 FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPR----RLLSN 179
I+KPVENLPSAEIQL++REA R K+ IVTPLMDFVR KRA K GPR R LSN
Sbjct: 122 QIAKPVENLPSAEIQLDKREAVR----KDIPIVTPLMDFVRHKRATKNGPRQQQHRSLSN 177
Query: 180 GKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
GK++RR+ +S GS S S+RG K + STTMYV RD K+S+ +DKSTYILVP++ DQ
Sbjct: 178 GKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQ 237
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDG--------------------------GKKKV 273
+ S+++++ +E+G + G++
Sbjct: 238 NPSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGRRSY 297
Query: 274 LLLKG-KEREISQV----SGSVSHQQSASVKTIISSPALKQNQRRENSGRIIRGILLNKD 328
LKG KE+++ S S+S ++S KTI+SS ALKQNQR E GRII+ IL NKD
Sbjct: 298 CFLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKD 357
Query: 329 ARQNQASGLHSEQQI--SNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLH--SEKQE 384
RQ+Q+S HSE+QI SNLE++K+ RP HVQL++K T+G ++++ V+ LH SE+QE
Sbjct: 358 FRQSQSSRAHSERQIQTSNLEREKQSTRPVHVQLILKGTDGAPENRITVHGLHVSSERQE 417
Query: 385 RRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRS 444
RR R+KDRPDR WT R + S S + S VD EG + K D + RS
Sbjct: 418 RRFRHKDRPDRGVWTSRSN--------GGGESLSSSASSQVDPLEGGHTELKHDTPSARS 469
Query: 445 GEVKAVGGGRSSHSSVDNGSHRHIGRRGPTH-VKD-DGSPVMSEGKPLRRGGASGYGSHE 502
GEVK++G R+SHSS +NG +H GRRGP + VKD DG ++SEGK R+ S YGS+E
Sbjct: 470 GEVKSLGSFRASHSS-ENGFSKHFGRRGPIYGVKDVDGYSILSEGKHPRKSSTSAYGSNE 528
>gi|449447609|ref|XP_004141560.1| PREDICTED: uncharacterized protein LOC101208317 [Cucumis sativus]
gi|449517953|ref|XP_004166008.1| PREDICTED: uncharacterized LOC101208317 [Cucumis sativus]
Length = 506
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 278/544 (51%), Positives = 350/544 (64%), Gaps = 68/544 (12%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK PL+RTKVV+R+LPP+++ I F GR+NW +R GKTSQK Q ARAY+DF
Sbjct: 1 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
+PEDV EFAEFF+GHVFVNEKG Q+K +VEYAPSQRVP+ +KKDGREGT+ KDP+YLE
Sbjct: 61 TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAG------PR 174
FL+ I+KP E+LPSAEIQLER+EAE++GAAKE IVTPLM+FVRQKRA ++G PR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180
Query: 175 RLLSNGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVP 234
++ +R +S+ P S S KRG +KKK Y+L+D+ KN++ +DKS +ILVP
Sbjct: 181 KV-------KRGGAASSRKPESNSMKRGMEKKK-----YILKDSVKNTNRRDKSNFILVP 228
Query: 235 KRDDQDFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQ 294
+R+DQ SAT S + + + G +D GKKK+LLLKGKER+I SH Q
Sbjct: 229 RREDQ---------SATSSAIGISDVGT---ADFGKKKILLLKGKERDI-------SHLQ 269
Query: 295 SASVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGL---HSEQQISNLEKDKR 351
SA+ + A K N RRE G +IR ILLN +AR Q+S + H + QI N + KR
Sbjct: 270 SATSSGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKR 329
Query: 352 PPRPSHVQLVMKDTNG--------------VSDDKVIVNDLH-----SEKQERRTRNKDR 392
PPRP++ + D + SD+K +LH SEKQE+R RNKDR
Sbjct: 330 PPRPTNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDR 389
Query: 393 PDRAAWTLR-RSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVG 451
PDR W R RSD S E SS Q S DS E G+ K D+ R+G+V +
Sbjct: 390 PDRGVWAPRSRSDASVSQLE--ESSVPQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIV 447
Query: 452 GGRSSHSSVDNGSHRHIGRRGPTHV-KDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKS 510
GR+ SSV+NGS RH+GRRG HV KDDGS +EGKP +RG A G HEKQVWVQKS
Sbjct: 448 SGRN--SSVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSKRGVA---GGHEKQVWVQKS 502
Query: 511 SSGS 514
SSGS
Sbjct: 503 SSGS 506
>gi|356517820|ref|XP_003527584.1| PREDICTED: uncharacterized protein LOC100795376 [Glycine max]
Length = 529
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 272/535 (50%), Positives = 354/535 (66%), Gaps = 45/535 (8%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
++TKVV+R+LPP+++Q ++ ID F RYNW SFR G S Q +RAY+DFK P+D
Sbjct: 14 EKTKVVIRHLPPSLSQSDLSQHIDSHFASRYNWFSFRPGNNSHTRQRHSRAYIDFKCPDD 73
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
V EFAEFF+GHVFVNE+G Q K IVEYAPSQRVPK +KKDGREGT+ KDP+YLEFL+ I
Sbjct: 74 VFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIYKDPDYLEFLKLI 133
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRR 185
+KP E+LPSAE+QLER+EAE+AGA KE IVTPLM+FVRQ+RA +G + + K+SRR
Sbjct: 134 AKPQEHLPSAEVQLERKEAEQAGANKETRIVTPLMEFVRQRRAVDSGMQASSAVAKVSRR 193
Query: 186 ASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSS---GKDKSTYILVPKRDDQDFD 242
+ + G P SG++KRGS+KKK YV +D AK + KDKS +++VP+RD+Q
Sbjct: 194 SRAALPGKPGSGNTKRGSEKKK-----YVQKDNAKGVARKESKDKSAFVVVPRRDNQ--- 245
Query: 243 KPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREI-SQVSGSVSHQQSASVKTI 301
S+ S G E SG+ SD GKKK+LLLKGK+REI S + G+V Q S +
Sbjct: 246 ---SAESMHGIEGPF--SGISLTSDSGKKKILLLKGKQREIPSAIEGTVKQQNIQSGNSP 300
Query: 302 ISSPALKQNQRRENSGRIIRGILLNKDARQN-QASGLHSEQQISNLEKDKRPPRPS---- 356
IS+PA KQNQRRE SGR+IR ILLN ++RQ+ +G + QI + E KRPPR
Sbjct: 301 ISAPA-KQNQRREASGRLIRSILLNNESRQSLSTTGAQHKIQILSSENGKRPPRTFGSRS 359
Query: 357 --HVQLVMKDTNGVS---------DDKVIVNDLH----SEKQERRTRNKDRPDRAAWT-L 400
+ Q+ D V+ D K + DLH EK E+RTRNKDRPDR WT L
Sbjct: 360 GLNDQVSNNDAAQVNSEGDSKMALDKKFVKRDLHGLGSGEKTEKRTRNKDRPDRGVWTPL 419
Query: 401 RRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSV 460
RRSD S ++ SSS +Q + S +S+EG + + S R GE A GGR + S+
Sbjct: 420 RRSDVSNAGNDHSSSSLAQPTQSNPESAEGEVKENV--PSGNRGGEFSASAGGR-GNPSI 476
Query: 461 DNGSHRHIGRRGPTH-VKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
+N S R+ RRG ++ VKDDG+ +SEGKP ++ + G+ +HEKQVWVQKSSSGS
Sbjct: 477 ENDSQRNFTRRGASYIVKDDGAVSISEGKPSKK--SVGHSAHEKQVWVQKSSSGS 529
>gi|357445259|ref|XP_003592907.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481955|gb|AES63158.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 498
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/495 (48%), Positives = 316/495 (63%), Gaps = 54/495 (10%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
DRTKVV+R+LPP ITQ + ID +F GRYNW SF K + H +RAY+DF P+D
Sbjct: 3 DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDD 61
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK--DGREGTLLKDPEYLEFLE 123
V++FA FFNGH+F+N+KG FK VEYAPSQRVP SKK D R+GT+ KDP+YL+FL+
Sbjct: 62 VIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQ 121
Query: 124 FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPR----RLLSN 179
I+KPVENLPSAEIQL++REA R K+ IVTPLMDFVR KRA K GPR R LSN
Sbjct: 122 QIAKPVENLPSAEIQLDKREAVR----KDIPIVTPLMDFVRHKRATKNGPRQQQHRSLSN 177
Query: 180 GKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
GK++RR+ +S GS S S+RG K + STTMYV RD K+S+ +DKSTYILVP++ DQ
Sbjct: 178 GKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQ 237
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDG--------------------------GKKKV 273
+ S+++++ +E+G + G++
Sbjct: 238 NPSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGRRSY 297
Query: 274 LLLKG-KEREISQV----SGSVSHQQSASVKTIISSPALKQNQRRENSGRIIRGILLNKD 328
LKG KE+++ S S+S ++S KTI+SS ALKQNQR E GRII+ IL NKD
Sbjct: 298 CFLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKD 357
Query: 329 ARQNQASGLHSEQQI--SNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLH--SEKQE 384
RQ+Q+S HSE+QI SNLE++K+ RP HVQL++K T+G ++++ V+ LH SE+QE
Sbjct: 358 FRQSQSSRAHSERQIQTSNLEREKQSTRPVHVQLILKGTDGAPENRITVHGLHVSSERQE 417
Query: 385 RRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRS 444
RR R+KDRPDR WT R + S S + S VD EG + K D + RS
Sbjct: 418 RRFRHKDRPDRGVWTSRSN--------GGGESLSSSASSQVDPLEGGHTELKHDTPSARS 469
Query: 445 GEVKAVGGGRSSHSS 459
GEVK++G R+SHSS
Sbjct: 470 GEVKSLGSFRASHSS 484
>gi|356507710|ref|XP_003522607.1| PREDICTED: uncharacterized protein LOC100801152 [Glycine max]
Length = 535
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 262/538 (48%), Positives = 351/538 (65%), Gaps = 39/538 (7%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
++TKVV+R+LPP++TQ + ID F RYNW SFR G S K Q +RAY+DFK P+D
Sbjct: 8 EKTKVVIRHLPPSLTQSDLFQHIDSHFASRYNWFSFRPGNNSHKRQRHSRAYIDFKCPDD 67
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
V EFAEFF+GHVFVNE+G Q K IVEYAPSQRVPK +KKDGREGT+ KDP+YLEFL+ I
Sbjct: 68 VFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIFKDPDYLEFLKLI 127
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRR 185
+KP E+LPSAEIQLER+E+E+ GA+KE IVTPLM+++RQKRA +G + + K+ RR
Sbjct: 128 AKPQEHLPSAEIQLERKESEQVGASKETPIVTPLMEYIRQKRAVDSGMQASSAVAKVCRR 187
Query: 186 ASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSS---GKDKSTYILVPKRDDQDFD 242
+ + G P SG+ KRGS+KKK YV +D AK+++ K+ S +I+VP+RDDQ +
Sbjct: 188 SRAALPGKPGSGNIKRGSEKKK-----YVQKDNAKSATRKESKNMSAFIVVPRRDDQFAE 242
Query: 243 KPVSSSSATGSEVVLEE--SGVPANSDGGKKKVLLLKGKEREI-SQVSGSVSHQQSASVK 299
+ S + +E SG+P S+ GKKK LLLKGK+++I S +V Q S
Sbjct: 243 SSIKGISDIKTLHGVEGSISGIPLTSESGKKKFLLLKGKQQDIPSATEATVKQQNVQSGN 302
Query: 300 TIISSPALKQNQRRENSGRIIRGILLNKDARQNQA-SGLHSEQQISNLEKDKRPPR---- 354
+ IS+PA KQNQRRE SGR+IR ILLN +ARQ+Q+ +G + QI + E +RP R
Sbjct: 303 SPISTPA-KQNQRREASGRLIRSILLNNEARQSQSTTGTQHKIQILSSENGQRPSRRFGS 361
Query: 355 --------PSHVQLVMK---DTNGVSDDKVIVNDLH----SEKQERRTRNKDRPDRAAWT 399
+H + D+ D+K I DLH S K E+RTRNKDRPDR WT
Sbjct: 362 RSGLNNQVSNHDAAQINSEGDSRRALDEKFIKRDLHGLGSSAKTEKRTRNKDRPDRGVWT 421
Query: 400 -LRRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHS 458
LRRSD S+ ++ SSS +Q + S +S+EG + + S R GE A GG +
Sbjct: 422 PLRRSDVSHAGNDYSSSSLAQPTQSNPESAEGEVKENV--PSGNRGGEFSASAGGHGGNP 479
Query: 459 SVDNGSHRHIGRRGPTH-VKDDGS-PVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
S++NGS R+ G ++ VKDDG+ +S+GKP ++ + G+ +HEKQVWV KSSSGS
Sbjct: 480 SIENGSQRNFIHHGASYVVKDDGAVSSISKGKPSKK--SVGHSAHEKQVWVHKSSSGS 535
>gi|357163670|ref|XP_003579808.1| PREDICTED: uncharacterized protein LOC100844832 [Brachypodium
distachyon]
Length = 506
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 253/529 (47%), Positives = 322/529 (60%), Gaps = 38/529 (7%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P RTKVV+R LPPAI Q A +Q+D F GRY+W FR G SQK+ +R YL+
Sbjct: 1 MKDPPPRTKVVLRRLPPAIGQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNL 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K EDV+EFAEFFNGH+FVNEKG QFK +VEYAPSQ+VPK KKD R+GT+ KD EYLE
Sbjct: 61 KSSEDVVEFAEFFNGHIFVNEKGAQFKALVEYAPSQQVPKSTIKKDARQGTITKDLEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ISKP E+LPSAEIQLER+EAERA A KE +VTPLM ++RQ+RAAK +R +N
Sbjct: 121 FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMAYIRQQRAAKNMAQR-SANS 179
Query: 181 KLSRRASG--SSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDD 238
+L R+ G +ST SP KR S++++AST+ YVLRD K+K TYILVPKR+D
Sbjct: 180 RLGRKVVGVVTSTSSP-----KRASERRRASTSTYVLRD------AKEKPTYILVPKRED 228
Query: 239 QDFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVS-GSVSHQQSAS 297
+ + + + +G SG A D K K++LLKG+ R S VS S HQ AS
Sbjct: 229 HSQREKIIAGT-SGDATSSRPSGS-AQVDSKKDKIVLLKGRARTDSTVSDSSTQHQPVAS 286
Query: 298 VKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSH 357
+ + S +Q+QR E SGRII+ IL NK+ R AS E I N EKDKRPPR +
Sbjct: 287 SRNTLPS-GSRQDQRLEASGRIIKTILSNKEGRHAVASQHEQEGHIINAEKDKRPPRFPN 345
Query: 358 VQLVMKDTNGVSDDKVIVNDLH---------SEKQERRTRNKDRPDRAAWTLRRSDGSYQ 408
+ ++KD + +K +D H SEK ER RN+DRPDR W RR D +
Sbjct: 346 SRSIVKDQTVENAEKSHYDDKHNHLHGSGPISEKIERHARNRDRPDRGVWAPRRYD---K 402
Query: 409 SDESLSSSASQLSLSAVDSSEGN-LGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRH 467
S + AS + S G+ + D R E + G + ++NG+ RH
Sbjct: 403 SAPGGGTQASSFDFPLMQSHSGDSFSQPQADGHGERKIETRGPG---TRTGPIENGN-RH 458
Query: 468 IGRRGPTHVKDDG--SPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
RRGP + S V ++GKP +RG AS YG+ E+QVWVQKSSSGS
Sbjct: 459 ANRRGPPRGSKEMEVSAVTADGKPSKRGSAS-YGAQERQVWVQKSSSGS 506
>gi|116309808|emb|CAH66847.1| H0525C06.10 [Oryza sativa Indica Group]
gi|218194905|gb|EEC77332.1| hypothetical protein OsI_16007 [Oryza sativa Indica Group]
gi|222628924|gb|EEE61056.1| hypothetical protein OsJ_14914 [Oryza sativa Japonica Group]
Length = 507
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 255/527 (48%), Positives = 326/527 (61%), Gaps = 40/527 (7%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
+K P RTKVV+R LPPAI Q A EQ+D FGGRY+W FR G SQK+ +R YL+F
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYSRLYLNF 67
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV+EFAE FNGHVFVNEKG QFK +VEYAPSQ+VPK +KKD R+GT++KDPEYLE
Sbjct: 68 KGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDPEYLE 127
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ISKP E+LPSAEIQLER+EAERA A KE +VTPLM +VRQ+RAAK+ +R S+
Sbjct: 128 FLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSGSS- 186
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKAS-TTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
+LSR+ +G T SP+ SKRGS+K++ S +T YVLR+ A K+K TYILVPKRD+
Sbjct: 187 RLSRKVAGVVTSSPS--PSKRGSEKRRTSASTQYVLRENA-----KEKPTYILVPKRDEH 239
Query: 240 -DFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASV 298
+K +S +GS V E K+K++LLKG+ R S S S QQS +
Sbjct: 240 AQREKDATSGGISGSAHVAENK---------KEKIVLLKGRARVDSNTSDVTSQQQSGTP 290
Query: 299 KTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHV 358
+ + +Q+ R E SGRII+ IL NK+ R S E I + +KRPPR +
Sbjct: 291 MKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHI--ITAEKRPPRIPNP 348
Query: 359 QLVMKDTNGVSDDKVIVNDLH---------SEKQERRTRNKDRPDRAAWTLRRSDGSYQS 409
+ V+KD + +K ++D H SEK ER RN+DRPDR W RR D S
Sbjct: 349 RSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASG 408
Query: 410 DESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIG 469
SSS S + G + D R + + GG R V+NG HRH
Sbjct: 409 GTHSSSS----EFSPMQQHSGENFCQQADGHGERKIDPRGHGGIRG--GPVENG-HRHAN 461
Query: 470 RRGPTH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
RRGP +K+ + S S+GKP +R A+ YG+HE+QVWVQKSSS +
Sbjct: 462 RRGPPRGLKEMEISASTSDGKPSKRASAN-YGAHERQVWVQKSSSAT 507
>gi|147800057|emb|CAN72659.1| hypothetical protein VITISV_042717 [Vitis vinifera]
Length = 437
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 231/362 (63%), Positives = 259/362 (71%), Gaps = 41/362 (11%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKGPLDRTKV+VR+LPP I++ AF EQID F RY V F GK SQ+ QS +RAYLDF
Sbjct: 76 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDF 135
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAEFF+GHVFVNEKG QFKTIVEYAPSQR+PK W KKDGREGT+ KDPEYLE
Sbjct: 136 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYLE 195
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
LE ++KP ENLPSAEIQLERREAERAGA K+ IV PLMDFVRQKRAAK RRL
Sbjct: 196 SLELLAKPFENLPSAEIQLERREAERAGAVKDTPIVMPLMDFVRQKRAAKG--RRL---- 249
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
STTMYVLRD AKN+S KDKST+ILVPKR DQ
Sbjct: 250 ----------------------------STTMYVLRDAAKNTSAKDKSTFILVPKRADQL 281
Query: 241 F-DKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSAS-V 298
DK V+ ++ G+E + EESGV D GKKKVLLLKGKEREIS + Q S V
Sbjct: 282 LSDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH---HLQQQNVTSPV 338
Query: 299 KTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQ--QISNLEKDKRPPRPS 356
K I+ + A KQNQRRE SGRIIR ILLNKDARQ+Q+S SEQ Q SNLEK+KRPPRP
Sbjct: 339 KNILGANAPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSEQQSQASNLEKEKRPPRPP 398
Query: 357 HV 358
+
Sbjct: 399 QL 400
>gi|115458546|ref|NP_001052873.1| Os04g0440100 [Oryza sativa Japonica Group]
gi|113564444|dbj|BAF14787.1| Os04g0440100 [Oryza sativa Japonica Group]
Length = 507
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 254/527 (48%), Positives = 325/527 (61%), Gaps = 40/527 (7%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
+K P RTKVV+R LPPAI Q A EQ+D FGGRY+W FR G SQK+ +R YL+F
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYSRLYLNF 67
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV+EFAE FNGHVFVNEKG QFK +VEYAPSQ+V K +KKD R+GT++KDPEYLE
Sbjct: 68 KGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDPEYLE 127
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ISKP E+LPSAEIQLER+EAERA A KE +VTPLM +VRQ+RAAK+ +R S+
Sbjct: 128 FLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSGSS- 186
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKAS-TTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
+LSR+ +G T SP+ SKRGS+K++ S +T YVLR+ A K+K TYILVPKRD+
Sbjct: 187 RLSRKVAGVVTSSPS--PSKRGSEKRRTSASTQYVLRENA-----KEKPTYILVPKRDEH 239
Query: 240 -DFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASV 298
+K +S +GS V E K+K++LLKG+ R S S S QQS +
Sbjct: 240 AQREKDATSGGISGSAHVAENK---------KEKIVLLKGRARVDSNTSDVTSQQQSGTP 290
Query: 299 KTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHV 358
+ + +Q+ R E SGRII+ IL NK+ R S E I + +KRPPR +
Sbjct: 291 MKNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHI--ITAEKRPPRIPNP 348
Query: 359 QLVMKDTNGVSDDKVIVNDLH---------SEKQERRTRNKDRPDRAAWTLRRSDGSYQS 409
+ V+KD + +K ++D H SEK ER RN+DRPDR W RR D S
Sbjct: 349 RSVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASG 408
Query: 410 DESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIG 469
SSS S + G + D R + + GG R V+NG HRH
Sbjct: 409 GTHSSSS----EFSPMQQHSGENFCQQADGHGERKIDPRGHGGIRG--GPVENG-HRHAN 461
Query: 470 RRGPTH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
RRGP +K+ + S S+GKP +R A+ YG+HE+QVWVQKSSS +
Sbjct: 462 RRGPPRGLKEMEISASTSDGKPSKRASAN-YGAHERQVWVQKSSSAT 507
>gi|414587118|tpg|DAA37689.1| TPA: hypothetical protein ZEAMMB73_050614 [Zea mays]
Length = 500
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 257/528 (48%), Positives = 330/528 (62%), Gaps = 42/528 (7%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P RTKVV+R LPPAI Q A +Q+D F GRY+W FR G SQK+ +R YL+F
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV+EFAE FNGH+FVNEKG QFK VEYAPSQ+VPK KKDGREGT+ KDPEYLE
Sbjct: 61 KHPEDVVEFAEVFNGHIFVNEKGAQFKAFVEYAPSQQVPKSNVKKDGREGTVTKDPEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLEFISKP E+LPSAEIQLER+EAERA A KEA +VTPLM +VRQ+RAAK+ +R S
Sbjct: 121 FLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQRPGS-- 178
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ- 239
+LSR+ +G T +S S KR +K+++ST YV+RD S K+K TYI+VPKR++
Sbjct: 179 RLSRKVAGVVT---SSSSPKRSFEKRRSST--YVVRD-----SIKEKPTYIMVPKREEHT 228
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVK 299
+K VS +S + SG ++ K+++LKG+ R S + Q S VK
Sbjct: 229 QREKIVSGNSGDATSGGASGSGQSSD------KIVILKGRGRVDSNTPDGAAQQSSTPVK 282
Query: 300 TIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQ 359
I S + + ++R E +GRII+ +L NK+ R + S E Q+ N EKDKRPPR + +
Sbjct: 283 NIPPS-SSRLDKRSEANGRIIKTVLSNKEVRSSNPSQHEQEGQMFNTEKDKRPPRALNPR 341
Query: 360 LVMKDTNGVSDDKVIV----NDLHS-----EKQERRTRNKDRPDRAAWTLRRSDGSYQS- 409
++KD + ++ N LHS EK ER RN+DRPDR+ W RR D S
Sbjct: 342 TIVKDQVVENAERSHFDEKNNYLHSSAPIGEKVERHARNRDRPDRSVWAPRRYDKSPPGG 401
Query: 410 -DESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHI 468
+LSS SQ+ + D+ L DG D R + + GG R V+NG HRH
Sbjct: 402 VSHALSSDFSQMQSHSGDNV-SQLTDGHGD----RKTDTRGHGGSRG--VPVENG-HRHA 453
Query: 469 GRRG-PTHVKDDG-SPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
RRG P K+ S + +GK +RG AS YG+HE+QVWVQKSSSGS
Sbjct: 454 NRRGTPCDPKETKISASVPDGKNSKRGSAS-YGAHERQVWVQKSSSGS 500
>gi|357455505|ref|XP_003598033.1| B3 domain-containing protein [Medicago truncatula]
gi|355487081|gb|AES68284.1| B3 domain-containing protein [Medicago truncatula]
Length = 1203
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 261/535 (48%), Positives = 335/535 (62%), Gaps = 46/535 (8%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDV 66
RTKVV+R+LPP++T+ + ID F RY+W FR G TS ++Q ARAYLDF P+DV
Sbjct: 9 RTKVVIRHLPPSLTESDLIQHIDNRFSSRYHWFVFRSGNTSYRNQKYARAYLDFNSPDDV 68
Query: 67 LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
EFAEFFNGHVFVNEKGVQ K +VEYAPSQRVPK +KKDGREGT+ KDP+YLEFL+ IS
Sbjct: 69 FEFAEFFNGHVFVNEKGVQHKAVVEYAPSQRVPKLSTKKDGREGTIYKDPDYLEFLKLIS 128
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRRA 186
KP E+LPSAEIQLER+EAE+AGA+KEA IVTPLM ++RQKRA +GP + ++ RRA
Sbjct: 129 KPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMAYIRQKRAVDSGPLVSSAATRVGRRA 188
Query: 187 SGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSS---GKDKSTYILVPKRDDQDFDK 243
G P +++RGS+KKK YV +D KN++ KDKS + +VP+R+D +
Sbjct: 189 RAMQ-GKPGPSNTRRGSEKKK-----YVQKDNVKNANRKDSKDKSAFTVVPRREDHSSES 242
Query: 244 PVSSSSATGSEVVLEE----------SGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQ 293
+ S V++E SG+P SD GKKK+LLLKGK+REI + + + Q
Sbjct: 243 SIKGVYEIDSSHVIDEFAVHGIEGSISGIPLTSDSGKKKILLLKGKQREIPKATEGMVKQ 302
Query: 294 QSASVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQ-QISNLEKDKRP 352
Q+A + KQNQRRE GR+IR ILLN ++RQ+Q++ + QI E +RP
Sbjct: 303 QNAQSANLPIPTTAKQNQRREAGGRLIRSILLNNESRQSQSTSTAQHKIQILTSENGRRP 362
Query: 353 PRPSHV------QLVMKDTNGVS---------DDKVIVNDLH----SEKQERRTRNKDRP 393
PRP Q+ D V+ D+K + D H +K ERRTRNKDRP
Sbjct: 363 PRPFGSRSGLSDQVSSHDAGHVNSEGESKRDLDEKFVRRDFHGSGIGDKTERRTRNKDRP 422
Query: 394 DRAAWT-LRRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGG 452
DR W LRRSD S+ S+E SSS +Q + S +S EG + + + S RSGE A G
Sbjct: 423 DRGVWAPLRRSDSSHSSNELSSSSLAQSAPSNPESVEGEVKENAY--SGNRSGEFSASAG 480
Query: 453 GRSSHSSVDNGSHRHIGRRG-PTHVKDDGSPVMSEGKPLRRGGASGYGSHEKQVW 506
GRSS SV+NGS R RRG P VKDDG+ SEGK ++G G +HE W
Sbjct: 481 GRSS-PSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKKG--VGNSTHEFAYW 532
>gi|326498059|dbj|BAJ94892.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/534 (47%), Positives = 320/534 (59%), Gaps = 46/534 (8%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P RTKVV+R LPPAI Q A +Q+D F GRY+W FR G SQK+ +R YL+F
Sbjct: 30 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWARFRPGNASQKNHRYSRLYLNF 89
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV+EFAEFFNGHVFVNEKG QFK +VEYAPSQ+VPK KKD R+GT+ KDPEYLE
Sbjct: 90 KSPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE 149
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ISKP E+LPSAEIQLER+EAERA A KE ++TPLM +VRQ+RAAK+ +R + N
Sbjct: 150 FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVITPLMVYVRQQRAAKSMAQRSV-NS 208
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
+LSR+ +G T S +S S + ++ +++T YV+RD A K+K TYIL PKRDD
Sbjct: 209 RLSRKVAGVVTSS-SSPSKRSSERRRASTSTQYVVRDNA-----KEKPTYILAPKRDDHT 262
Query: 241 FDKPVSSSSATGSEVVLEESGVPANS----DGGKKKVLLLKGKEREISQVSGSVSHQQSA 296
+ + + ++ + SG P+ S DG + K++LLKG+ R S +S S + QQS
Sbjct: 263 QREKIIAGTSDAT------SGGPSGSAQVIDGKRDKIVLLKGRARVDSNISDSSTPQQSV 316
Query: 297 SVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPS 356
+Q+QR E SGRII+ IL NK+ R AS E I + EKDKRPPR
Sbjct: 317 PPSRNTPPSTSRQDQRNEASGRIIKTILSNKEGRHAIASQHEQEGHIISAEKDKRPPRAP 376
Query: 357 HVQLVMKDTNGVSDDKVIVNDLHS---------EKQERRTRNKDRPDRAAWTLRRSD--- 404
+ + KD + +K +D H+ EK ER RN+DRPDR W RR D
Sbjct: 377 NSRSTAKDQIVENAEKNHYDDKHNHVHGSGPIGEKIERHARNRDRPDRGVWAPRRYDKSA 436
Query: 405 --GSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDN 462
G Q+ S S+ V G+ K D GGR V+N
Sbjct: 437 SGGGAQASSSEFPLMQSHSMDNVSQQVDGHGERKIDTRGP---------GGRG--GLVEN 485
Query: 463 GSHRHIGRRGPTHVKDDGS--PVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
G+ RH RRGP + P+ S+GKP +RG AS Y +HE+QVWVQKSSSGS
Sbjct: 486 GN-RHPNRRGPPRGPKEVEIPPIASDGKPSKRGPAS-YVAHERQVWVQKSSSGS 537
>gi|147773122|emb|CAN62711.1| hypothetical protein VITISV_035617 [Vitis vinifera]
Length = 355
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 234/362 (64%), Positives = 270/362 (74%), Gaps = 26/362 (7%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKGPLDRTKV+VR+LPP I + AF EQI+ F GRY V FR GK SQ+ QS +RAYLDF
Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAEFF+GHVFVNEKG QFKTIVEYAPSQR+PK W KKD REGT+ KDPEYLE
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDSREGTIFKDPEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ++KP ENLPSAEIQLERREAERA + + I + LSNG
Sbjct: 121 FLELLAKPFENLPSAEIQLERREAERAEKSFQGCIPS-------------------LSNG 161
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
KLSRRASGSS+G+P+ GSSKRGS K++ STTMYVLRD AKN+S KDKST+ LVPKRDDQ
Sbjct: 162 KLSRRASGSSSGNPSLGSSKRGSGKRRLSTTMYVLRDAAKNTSAKDKSTFSLVPKRDDQL 221
Query: 241 F-DKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSAS-V 298
DK V+ ++ G+E + EESGV D GKKKVLLLKGKEREIS + Q S V
Sbjct: 222 LSDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH---HLQQQNVTSPV 278
Query: 299 KTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQ--QISNLEKDKRPPRPS 356
K I+ + + KQNQRRE SGRIIR ILLNKDARQ+Q+S S Q Q SNLEK+KRPPRP
Sbjct: 279 KNILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPPRPP 338
Query: 357 HV 358
+
Sbjct: 339 QL 340
>gi|242075888|ref|XP_002447880.1| hypothetical protein SORBIDRAFT_06g017380 [Sorghum bicolor]
gi|241939063|gb|EES12208.1| hypothetical protein SORBIDRAFT_06g017380 [Sorghum bicolor]
Length = 504
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 256/533 (48%), Positives = 328/533 (61%), Gaps = 48/533 (9%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P RTKVV+R LPPAI Q A +Q+D F GRY+W FR G SQK+ +R YL+F
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAE FNGHVFVNEKG QFK VEY+PSQ+VPK KKDGREGT++KDPEYLE
Sbjct: 61 KRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYSPSQQVPKSNIKKDGREGTIMKDPEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ISKP E+LPSAEIQLER+EAERA A KEA +VTPLM +VRQ+RAAK+ +R S
Sbjct: 121 FLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQRPGS-- 178
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
+LSR+ +G T +S S KR S+K+++ST YV+RD S K+K TYI+VPKR++
Sbjct: 179 RLSRKVAGVVT---SSSSPKRSSEKRRSST--YVVRD-----STKEKPTYIMVPKREEHT 228
Query: 241 F-DKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVK 299
+K ++ +S G SG + + K+++LKG+ R S + Q S VK
Sbjct: 229 HREKAIAGNS--GDATSGGTSGSGQAGEAKRDKIVILKGRGRVDSNTPDGATQQSSTPVK 286
Query: 300 TIISSPALKQ-NQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHV 358
++ PA + +QR E SGRII+ IL NK+ R + S E + N EKDKRPPR +
Sbjct: 287 SV--PPATSRLDQRPEASGRIIKTILSNKEIRSSNPSQHEQEGHVFNTEKDKRPPRAVNP 344
Query: 359 QLVMKDT------NGVSDDKVIVNDLH-----SEKQERRTRNKDRPDRAAWTLRRSDGSY 407
+ ++KD D+K N LH EK ER RN+DRPDR W RR D
Sbjct: 345 RTIVKDQLVENSERSHFDEK--TNHLHGSAPIGEKVERHARNRDRPDRGVWAPRRYD--- 399
Query: 408 QSDESLSSSASQLSLSAVDSSEGN----LGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNG 463
+S S AS + S G+ + DG D R + + GG R V+NG
Sbjct: 400 KSTSGGGSHASSSDFPQIQSHSGDNVSQIADGHGD----RKTDTRGHGGSRG--VPVENG 453
Query: 464 SHRHIGRRGPTH--VKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
HRH RRGP + + S + +GK +RG AS YG+HE+QVWVQKSSSGS
Sbjct: 454 -HRHANRRGPPRGPKETEISASVPDGKNSKRGSAS-YGAHERQVWVQKSSSGS 504
>gi|413918386|gb|AFW58318.1| hypothetical protein ZEAMMB73_385077 [Zea mays]
Length = 503
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 255/532 (47%), Positives = 327/532 (61%), Gaps = 47/532 (8%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P RTKVV+R LPPAI Q A +Q+D F GRY+W FR G SQK+ +R YL+F
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDLRFAGRYDWACFRPGNASQKNHRHSRLYLNF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAE FNGHVFVNEKG QFK VEYAPSQ+VPK KKDGREGT++KDPEYLE
Sbjct: 61 KRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYAPSQQVPKSTIKKDGREGTIMKDPEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLEFISKP E+LPSAEIQLER+EAERA A KEA +VTPLM +VRQ+RAAK+ R S
Sbjct: 121 FLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMVHRPGS-- 178
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ- 239
+LSR+ + + S S KR S+K+++ST YV+RD K+K TYI+VPKR++
Sbjct: 179 RLSRKLASVVS----SSSPKRSSEKRRSST--YVVRDNT-----KEKPTYIMVPKREEHT 227
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVK 299
+K V+ +S + SG A + + K+++LKG+ R S + S +K
Sbjct: 228 QREKDVAGNSGDATSGGTSGSGQVA--EFKRDKIVILKGRGRIDSNTPNGATQHSSTPIK 285
Query: 300 TIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQ 359
+ S + +Q+QR E SG+II+ IL NK+AR + S E + N EKDKRPPR + +
Sbjct: 286 NVPPSRS-RQDQRLEASGKIIKTILSNKEARSSNPSEHEQEGHMFNTEKDKRPPRAFNPR 344
Query: 360 LVMKDT------NGVSDDKVIVNDLH-----SEKQERRTRNKDRPDRAAWTLRRSDGSYQ 408
++KD D+K N LH EK ER RN+DRPDR W RR D +
Sbjct: 345 TIVKDQVVENAERSHFDEK--ANHLHGSVPIGEKVERHARNRDRPDRGVWAARRYD---K 399
Query: 409 SDESLSSSASQLSLSAVDSSEGN----LGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGS 464
S + SS S + S G+ L DG D R + + GG R V+NG
Sbjct: 400 STSAGSSHPSSSEFPQMQSHSGDNILQLADGHGD----RKTDTRGQGGSRG--VPVENG- 452
Query: 465 HRHIGRRG-PTHVKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
HRH RRG P K+ + S + + K +RG AS YG+HE+QVWVQKSSSGS
Sbjct: 453 HRHANRRGLPRGPKETEISASVPDAKNSKRGSAS-YGAHERQVWVQKSSSGS 503
>gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsis thaliana]
gi|10092444|gb|AAG12847.1|AC079286_4 unknown protein; 6107-8789 [Arabidopsis thaliana]
gi|22136008|gb|AAM91586.1| unknown protein [Arabidopsis thaliana]
gi|23197808|gb|AAN15431.1| unknown protein [Arabidopsis thaliana]
gi|332193532|gb|AEE31653.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 482
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 251/532 (47%), Positives = 324/532 (60%), Gaps = 68/532 (12%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK PL + KVVVR+LPP+++Q QID F RYNWVSFR GK+S K+Q +RAY+ F
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV EFA FFNGHVFVNEKG QFK IVEYAPSQRVPK KKD REG++ KDP+YLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FL+ I++PVENLPSAEIQLERREAE++GA+K A IVTPLM+F+RQKRA GP+ L
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
+ RR S P+ SKR S+KKK YV ++++KN VP++ D
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKK-----YVEKESSKN-----------VPRKTTAD 224
Query: 241 F--DKP-VSSSSATGSEVVLEES---------GVPANSDGGKKKVLLLKGKEREISQVSG 288
KP S+++G E+ E+ G+ D GKKK+LLL+ K+R+
Sbjct: 225 VSSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPP 284
Query: 289 SVSHQQSASVKTIIS--SPALKQNQRRENSGRIIRGILLNKDARQNQASG-LHSEQQI-- 343
Q + T +S S +QNQ+ + GR+I+GILL D+R +Q+S + SEQ++
Sbjct: 285 PQPEQH---IDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEP 341
Query: 344 SNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLRRS 403
S E KRP RP++ + KD + + SEKQERRTRNKDRPDR W RR
Sbjct: 342 SEAENYKRPSRPANTR-AGKDYH--------TSGTISEKQERRTRNKDRPDRVMWAPRR- 391
Query: 404 DGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNG 463
DGS D+ LSS+ GN G+ K + + RSGEV GG +++NG
Sbjct: 392 DGS--EDQPLSSA-------------GNNGEVKDRMFSQRSGEVVNSSGGH----TLENG 432
Query: 464 SHRHIGRR-GPTHVKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
S RH RR G + K++ V+ EGK RRG G SHEKQ+W+QK SSG+
Sbjct: 433 SARHSSRRVGGRNRKEEV--VIGEGKTSRRGSGGGPSSHEKQMWIQKPSSGT 482
>gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
gi|332193533|gb|AEE31654.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 484
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 250/534 (46%), Positives = 323/534 (60%), Gaps = 70/534 (13%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKT--SQKHQSCARAYL 58
MK PL + KVVVR+LPP+++Q QID F RYNWVSFR GK+ K+Q +RAY+
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60
Query: 59 DFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEY 118
FK PEDV EFA FFNGHVFVNEKG QFK IVEYAPSQRVPK KKD REG++ KDP+Y
Sbjct: 61 SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLS 178
LEFL+ I++PVENLPSAEIQLERREAE++GA+K A IVTPLM+F+RQKRA GP+ L
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180
Query: 179 NGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDD 238
+ RR S P+ SKR S+KKK YV ++++KN VP++
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKK-----YVEKESSKN-----------VPRKTT 224
Query: 239 QDF--DKP-VSSSSATGSEVVLEES---------GVPANSDGGKKKVLLLKGKEREISQV 286
D KP S+++G E+ E+ G+ D GKKK+LLL+ K+R+
Sbjct: 225 ADVSSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDN 284
Query: 287 SGSVSHQQSASVKTIIS--SPALKQNQRRENSGRIIRGILLNKDARQNQASG-LHSEQQI 343
Q + T +S S +QNQ+ + GR+I+GILL D+R +Q+S + SEQ++
Sbjct: 285 PPPQPEQH---IDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRV 341
Query: 344 --SNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLR 401
S E KRP RP++ + KD + + SEKQERRTRNKDRPDR W R
Sbjct: 342 EPSEAENYKRPSRPANTR-AGKDYH--------TSGTISEKQERRTRNKDRPDRVMWAPR 392
Query: 402 RSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVD 461
R DGS D+ LSS+ GN G+ K + + RSGEV GG +++
Sbjct: 393 R-DGS--EDQPLSSA-------------GNNGEVKDRMFSQRSGEVVNSSGGH----TLE 432
Query: 462 NGSHRHIGRR-GPTHVKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
NGS RH RR G + K++ V+ EGK RRG G SHEKQ+W+QK SSG+
Sbjct: 433 NGSARHSSRRVGGRNRKEEV--VIGEGKTSRRGSGGGPSSHEKQMWIQKPSSGT 484
>gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]
gi|297336911|gb|EFH67328.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 327/525 (62%), Gaps = 50/525 (9%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK PL + KVVVR+LPP+++Q QID F RYNWVSFR GK+S K+Q +RAY+ F
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV EFA FFNGHVFVNEKG QFK +VEYAPSQRVPK KKD REG++ KDP+YLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAVVEYAPSQRVPKPCDKKDPREGSISKDPDYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FL+ I++PVENLPSAEIQLERREAE++GA+K A IVTPLM+F+RQKRA G + L
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGSQGLSDVR 180
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQD 240
+ RRA S P+S SKR S+KKK YV +D++KN K + D
Sbjct: 181 RGGRRARVVSANKPSSRPSKRNSEKKK-----YVEKDSSKNVPRKTTADV----SSSKPD 231
Query: 241 FDKPVSSSSATGSE---VVLEES--GVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQS 295
+ + SS + TG++ V++ S G+ D GKKK+LLLK K+R+ S + Q
Sbjct: 232 YRQSNSSGNETGNKSTAPVIDSSLPGIALTMDSGKKKILLLKSKDRDNSD---NPPPQPE 288
Query: 296 ASVKTIIS--SPALKQNQRRENSGRIIRGILLNKDARQNQASG-LHSEQQI--SNLEKDK 350
++TI+S S A +QNQ+ + GR+I+GIL+ D+R +Q+S + EQ++ S E K
Sbjct: 289 QHIETILSGNSTASRQNQKSDVGGRLIKGILMKSDSRPSQSSTFVQPEQRVEPSEAENYK 348
Query: 351 RPPRPSHVQLVMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLRRSDGSYQSD 410
RPPRP++ + KD + + SEKQERRTRNKDRPDR W R DGS S+
Sbjct: 349 RPPRPANTR-AGKDYH--------ASGTISEKQERRTRNKDRPDRVVWAPLRRDGSNISE 399
Query: 411 ESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGR 470
+ SSA GN G+ K + + RSGEV GG +++NGS RH R
Sbjct: 400 DQPLSSA------------GNNGEVKDRMFSQRSGEVVNSSGGH----TLENGSARHSSR 443
Query: 471 R-GPTHVKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
R G + K++ + EGK RRGG G S EKQ+W+QK S G+
Sbjct: 444 RVGGRNRKEEL--MTGEGKTSRRGGGGGPNSQEKQMWIQKPSLGT 486
>gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidopsis thaliana]
Length = 525
Score = 350 bits (898), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 230/490 (46%), Positives = 296/490 (60%), Gaps = 67/490 (13%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK PL + KVVVR+LPP+++Q QID F RYNWVSFR GK+S K+Q +RAY+ F
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV EFA FFNGHVFVNEKG QFK IVEYAPSQRVPK KKD REG++ KDP+YLE
Sbjct: 61 KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRR--LLS 178
FL+ I++PVENLPSAEIQLERREAE++GA+K A IVTPLM+F+RQKRA GP++ L
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQQQGLSD 180
Query: 179 NGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDD 238
+ RR S P+ SKR S+KKK YV ++++KN VP++
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKK-----YVEKESSKN-----------VPRKTT 224
Query: 239 QDFD--KP-VSSSSATGSEVVLEES---------GVPANSDGGKKKVLLLKGKEREISQV 286
D KP S+++G E+ E+ G+ D GKKK+LLL+ K+R+
Sbjct: 225 ADVSSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDN 284
Query: 287 SGSVSHQQSASVKTIIS--SPALKQNQRRENSGRIIRGILLNKDARQNQASGL-HSEQQI 343
Q + T +S S +QNQ+ + GR+I+GILL D+R +Q+S SEQ++
Sbjct: 285 PPPQPEQH---IDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRV 341
Query: 344 --SNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRPDRAAWTLR 401
S E KRP RP++ + KD + + SEKQERRTRNKDRPDR W R
Sbjct: 342 EPSEAENYKRPSRPANTR-AGKDYH--------TSGTISEKQERRTRNKDRPDRVMWAPR 392
Query: 402 RSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVD 461
R DGS D+ LSS+ GN G+ K + + RSGEV GG +++
Sbjct: 393 R-DGS--EDQPLSSA-------------GNNGEVKDRMFSQRSGEVVNSSGGH----TLE 432
Query: 462 NGSHRHIGRR 471
NGS RH RR
Sbjct: 433 NGSARHSSRR 442
>gi|357445257|ref|XP_003592906.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481954|gb|AES63157.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 385
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/385 (49%), Positives = 250/385 (64%), Gaps = 44/385 (11%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
DRTKVV+R+LPP ITQ + ID +F GRYNW SF K + H +RAY+DF P+D
Sbjct: 3 DRTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-SHNHTSRAYIDFNTPDD 61
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK--DGREGTLLKDPEYLEFLE 123
V++FA FFNGH+F+N+KG FK VEYAPSQRVP SKK D R+GT+ KDP+YL+FL+
Sbjct: 62 VIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQFLQ 121
Query: 124 FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPR----RLLSN 179
I+KPVENLPSAEIQL++REA R K+ IVTPLMDFVR KRA K GPR R LSN
Sbjct: 122 QIAKPVENLPSAEIQLDKREAVR----KDIPIVTPLMDFVRHKRATKNGPRQQQHRSLSN 177
Query: 180 GKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
GK++RR+ +S GS S S+RG K + STTMYV RD K+S+ +DKSTYILVP++ DQ
Sbjct: 178 GKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQGDQ 237
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDG--------------------------GKKKV 273
+ S+++++ +E+G + G++
Sbjct: 238 NPSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGRRSY 297
Query: 274 LLLKG-KEREISQV----SGSVSHQQSASVKTIISSPALKQNQRRENSGRIIRGILLNKD 328
LKG KE+++ S S+S ++S KTI+SS ALKQNQR E GRII+ IL NKD
Sbjct: 298 CFLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKD 357
Query: 329 ARQNQASGLHSEQQI--SNLEKDKR 351
RQ+Q+S HSE+QI SNLE++K+
Sbjct: 358 FRQSQSSRAHSERQIQTSNLEREKQ 382
>gi|39545659|emb|CAE03133.3| OJ000114_01.14 [Oryza sativa Japonica Group]
Length = 455
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 224/525 (42%), Positives = 282/525 (53%), Gaps = 95/525 (18%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
+K P RTKVV+R LPPAI Q A EQ+D FGGRY+W FR G SQK+ +R YL+F
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNASQKNHRYSRLYLNF 67
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV+EFAE FNGHVFVNEKG QFK +VEYAPSQ+V K +KKD R+GT++KDPEYLE
Sbjct: 68 KGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDPEYLE 127
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLE ISKP E+LPSAEIQLER+EAERA A KE +VTPLM +VRQ+RAA
Sbjct: 128 FLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAA----------- 176
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ- 239
K+ YVLR+ A K+K TYILVPKRD+
Sbjct: 177 --------------------------KSMAQQYVLRENA-----KEKPTYILVPKRDEHA 205
Query: 240 DFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVK 299
+K +S +GS V E K+K++LLKG+ R S S S QQS +
Sbjct: 206 QREKDATSGGISGSAHVAENK---------KEKIVLLKGRARVDSNTSDVTSQQQSGTPM 256
Query: 300 TIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNLEKDKRPPRPSHVQ 359
+ + +Q+ R E SGRII+ IL NK+ R S E I + +KRPPR + +
Sbjct: 257 KNAAQSSSRQDPRLEGSGRIIKTILSNKEGRHVVTSQHDQEGHI--ITAEKRPPRIPNPR 314
Query: 360 LVMKDTNGVSDDKVIVNDLH---------SEKQERRTRNKDRPDRAAWTLRRSDGSYQSD 410
V+KD + +K ++D H SEK ER RN+DRPDR W RR D S
Sbjct: 315 SVVKDQVVENAEKNHLDDKHSHLHGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGG 374
Query: 411 ESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGR 470
SSS +F SGE + HRH R
Sbjct: 375 THSSSS-------------------EFSPMQQHSGE----------NFCQQADGHRHANR 405
Query: 471 RGPTH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSG 513
RGP +K+ + S S+GKP +R A+ YG+HE + +S G
Sbjct: 406 RGPPRGLKEMEISASTSDGKPSKRASAN-YGAHEILIKTNIASCG 449
>gi|224146308|ref|XP_002325958.1| predicted protein [Populus trichocarpa]
gi|222862833|gb|EEF00340.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 228/547 (41%), Positives = 311/547 (56%), Gaps = 62/547 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K PL RTKVV+R+LPP+++Q Q D F RYNW FR G +S K Q +RAY+DFK
Sbjct: 5 KEPLGRTKVVIRHLPPSLSQSNLFSQFDHLFCHRYNWFRFRPGNSSHKSQRYSRAYIDFK 64
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
PEDVLEFA FF+GHVFVNEKG QFK IVEYAP Q VPK KD REGT+ DP+YLEF
Sbjct: 65 NPEDVLEFAGFFHGHVFVNEKGSQFKAIVEYAPCQHVPKSCPHKDSREGTIYTDPDYLEF 124
Query: 122 LEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGK 181
L+ I+KP N PSAEI+LER+EAE + A K A I TPLM+FVR+KRA K + +
Sbjct: 125 LKLIAKPARNPPSAEIKLERKEAEESEAVKGAPISTPLMEFVRKKRADKGVQGSAVVKNR 184
Query: 182 LSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQDF 241
+RA +S + S ++K+GS KK+ Y+L+D+ KNS+ K KS I+ K++
Sbjct: 185 --KRAGSASLTNSGSSNAKQGSGKKR-----YILKDSTKNSNWKGKSIIIMARKQEGL-- 235
Query: 242 DKPVSSSSATGSEVVL------EESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQ-- 293
P +S SEV S + +++ G+K LLL GK+REIS S HQ
Sbjct: 236 --PTTSGRKEISEVESISGVEGSASKISLDAESGRKINLLLDGKKREISLESEGPLHQLG 293
Query: 294 QSASVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQISNL--EKDKR 351
+++ + +S+ A KQ QR E S R+I+ IL +K A ++++ NL E DK+
Sbjct: 294 LTSNFGSSVST-AAKQYQRHEASERLIKSILPSKAAS--------AKKKFQNLEVENDKQ 344
Query: 352 PPRPSHVQLVM---------------KDTNGVSDDKVIVNDLH--------SEKQERRTR 388
P +P Q+ + D S DK++ D H +K+E+ TR
Sbjct: 345 PIQPKTTQVGLSGHVPYKEPLASMSDNDVKSSSYDKLVKKDQHDPGSHFEKQQKREKHTR 404
Query: 389 NKDRPDRAAWT-LRRSDGSYQSDESLSSSA--SQLSLSAVDSSEGNLGDG-KFDLSNMRS 444
NKDRP R WT +R + + E L+SS S++ +V + G + DG ++ N S
Sbjct: 405 NKDRPCRGVWTPVRNCPSKHANAEHLTSSILQSEVHSDSVRETHGEVKDGTQYRDHNQGS 464
Query: 445 GEVKAVGGGRSSHSSVDNGSHRHIGRRGPTH-VKDDGSPVMSEGKPLRRGGASGYGSHEK 503
A S++SS +N S R GRR H + D SP + GK ++GG +GY + EK
Sbjct: 465 ----AGSPSGSNNSSAENVSRRDFGRRVTAHNIMLDSSPSATGGKFSKKGGHAGYTAQEK 520
Query: 504 QVWVQKS 510
QVWVQKS
Sbjct: 521 QVWVQKS 527
>gi|359486154|ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852735 [Vitis vinifera]
Length = 322
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 185/300 (61%), Positives = 223/300 (74%), Gaps = 13/300 (4%)
Query: 212 MYVLRDTAKNSSGKDKSTYILVPKRDDQDF-DKPVSSSSATGSEVVLEESGVPANSDGGK 270
MYVLRDTAK++S KDKST+ILVPKRDDQ DK V+ ++ G+E + EESGV D GK
Sbjct: 1 MYVLRDTAKSTSAKDKSTFILVPKRDDQLLSDKSVNLAAGGGAEALEEESGVSGAVDAGK 60
Query: 271 KKVLLLKGKEREISQVSGSVSHQQSASVKTIISSPALKQNQRRENSGRIIRGILLNKDAR 330
KKVLLLKGKEREIS + ++ VK I+ + A KQNQRRE SGRIIR ILLNKDAR
Sbjct: 61 KKVLLLKGKEREISH--HLLQQNVTSPVKNILGANAPKQNQRREGSGRIIRSILLNKDAR 118
Query: 331 QNQASGLHSEQQ--ISNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLHS---EKQER 385
Q+Q+S +EQQ SNLEK+KRPPRP H+QL K+TNG DDKV+ ND+HS EKQ++
Sbjct: 119 QSQSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGAQDDKVVGNDVHSFVSEKQDK 178
Query: 386 RTRNKDRPDRAAWT-LRRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRS 444
RTRNKDRPDR WT LRRSDGS+ S S S+S ++ D EG+ G+ + D+SN RS
Sbjct: 179 RTRNKDRPDRGVWTPLRRSDGSHAS--DESLSSSASQPTSSDFPEGSHGEMRSDMSNARS 236
Query: 445 GEVKAVGGGRSSHSSVDNGSHRHIGRRGPTH-VKD-DGSPVMSEGKPLRRGGASGYGSHE 502
GEVKA+G GR HS++DNGSH+H GRRGPTH VKD DGS ++SEGK +RG A GYGSHE
Sbjct: 237 GEVKALGSGRGGHSALDNGSHKHSGRRGPTHSVKDADGSSIVSEGKHSKRGSAPGYGSHE 296
>gi|359486243|ref|XP_002264276.2| PREDICTED: regulator of nonsense transcripts 3B-like [Vitis
vinifera]
Length = 256
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 140/188 (74%), Positives = 156/188 (82%), Gaps = 5/188 (2%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKGPLDRTKVVVR+LPP I++ AF EQID F GRY V FR GK SQK QS +RAYLDF
Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNSQKRQSYSRAYLDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAEFF+GHVFVNEKG QFKTIVEYAPSQR+PK W KKDGREGT+ KDPEY+E
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYME 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPR-----R 175
F+E ++KPVENLPSAEIQLERREAERAGA K+ IVTPLMDFVRQKRAAK R
Sbjct: 121 FVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRVAIVYS 180
Query: 176 LLSNGKLS 183
L + G+LS
Sbjct: 181 LYALGRLS 188
>gi|414587119|tpg|DAA37690.1| TPA: hypothetical protein ZEAMMB73_050614 [Zea mays]
Length = 270
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/239 (61%), Positives = 178/239 (74%), Gaps = 12/239 (5%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P RTKVV+R LPPAI Q A +Q+D F GRY+W FR G SQK+ +R YL+F
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNASQKNHRYSRLYLNF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K PEDV+EFAE FNGH+FVNEKG QFK VEYAPSQ+VPK KKDGREGT+ KDPEYLE
Sbjct: 61 KHPEDVVEFAEVFNGHIFVNEKGAQFKAFVEYAPSQQVPKSNVKKDGREGTVTKDPEYLE 120
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
FLEFISKP E+LPSAEIQLER+EAERA A KEA +VTPLM +VRQ+RAAK+ +R
Sbjct: 121 FLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQR--PGS 178
Query: 181 KLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILVPKRDDQ 239
+LSR+ +G T +S S KR +K+++ST YV+RD S K+K TYI+VPKR++
Sbjct: 179 RLSRKVAGVVT---SSSSPKRSFEKRRSST--YVVRD-----SIKEKPTYIMVPKREEH 227
>gi|147777847|emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera]
Length = 304
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 162/257 (63%), Positives = 193/257 (75%), Gaps = 12/257 (4%)
Query: 255 VVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVKTIISSPALKQNQRRE 314
+VL SGV D GKKKVLLLKGKEREIS + ++ VK I+ + A KQNQRRE
Sbjct: 1 MVLLVSGVSGAVDAGKKKVLLLKGKEREISH--HLLQQNVTSPVKNILGANAPKQNQRRE 58
Query: 315 NSGRIIRGILLNKDARQNQASGLHSEQQ--ISNLEKDKRPPRPSHVQLVMKDTNGVSDDK 372
SGRIIR ILLNKDARQ+Q+S +EQQ SNLEK+KRPPRP H+QL K+TNG DDK
Sbjct: 59 GSGRIIRSILLNKDARQSQSSMFQTEQQSQASNLEKEKRPPRPPHIQLASKETNGAQDDK 118
Query: 373 VIVNDLHS---EKQERRTRNKDRPDRAAWT-LRRSDGSYQSDESLSSSASQLSLSAVDSS 428
V+ ND+HS EKQ++RTRNKDRPDR WT LRRSDGS+ SDESLSSSAS ++ D
Sbjct: 119 VVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSSSAS--QPTSSDFP 176
Query: 429 EGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDNGSHRHIGRRGPTH-VKD-DGSPVMSE 486
EG+ G+ + D+SN RSGEVKA+G GR HS++DNGSH+H GRRGPTH VKD DGS ++SE
Sbjct: 177 EGSHGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSGRRGPTHSVKDADGSSIVSE 236
Query: 487 GKPLRRGGASGYGSHEK 503
GK +RG A GYGSHE+
Sbjct: 237 GKHSKRGSAPGYGSHEE 253
>gi|168052934|ref|XP_001778894.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669763|gb|EDQ56344.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1124
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 157/220 (71%), Gaps = 6/220 (2%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK RTKV VR+LPP++ F +QI + G Y W S+ GK+S K Q +RAY++F
Sbjct: 26 MKEQQARTKVSVRHLPPSLAWAVFQDQIAVKYAGTYTWWSYHPGKSSHKRQVYSRAYINF 85
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
KKPEDV++F E FNGHVFVNE+G Q+K +VEYAP QRVPK SKKD REGT+ DPEYL
Sbjct: 86 KKPEDVIDFYEDFNGHVFVNERGAQYKALVEYAPYQRVPKPRSKKDVREGTISTDPEYLA 145
Query: 121 FLEFISKPVENLPSAEIQLERREAERA-----GAAKEALIVTPLMDFVRQKRAAKAGPRR 175
F+E ++KP E LPSAE+QLER+EAE+A G +K+A++VTPLM++VR +RAAK+ P+R
Sbjct: 146 FVEQLAKPAEYLPSAEVQLERKEAEKASNLASGTSKDAVVVTPLMEYVRSRRAAKSTPQR 205
Query: 176 -LLSNGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYV 214
+ S+ KL+ R+ G + + KRGS+K ++ ++ Y
Sbjct: 206 GMSSSAKLAARSGGVPVSAFKLATQKRGSEKGRSGSSSYT 245
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 283 ISQVSGSVSHQQSASVKTIISSPALKQNQRRENSGRI-IRGILLNKDARQNQASGLHSEQ 341
+ Q+ +V+H+ ++ +I S KQ R+E GR +RG + S H++
Sbjct: 426 VQQMQSAVAHRATSLGDSISSG---KQIHRQEYGGRTSLRGTPAQGSSAPGLGSDSHAQP 482
Query: 342 QISNLEKDK---RPPRPSHVQLVMKDT---------------NGVSDD-KVIVND----- 377
Q S + +K RPPRP ++L KD NG K + ND
Sbjct: 483 QASGTQVEKVGKRPPRPQAIRLAGKDQAISLVSSVEAEGQAGNGEERSVKQVANDGAASS 542
Query: 378 --LHSEKQERRTRNKDRPDRAAWTLRRSDGSYQSDESLSSSASQLSLSAVDSSEGN 431
L ++ RR RNKDRPDR WT RR +G + + + S S + S+EG
Sbjct: 543 PSLLDKQDARRLRNKDRPDRPVWTPRRREGVTGKADGTAFANSPASAAGTASTEGT 598
>gi|224119924|ref|XP_002331096.1| predicted protein [Populus trichocarpa]
gi|222872824|gb|EEF09955.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/169 (70%), Positives = 132/169 (78%), Gaps = 8/169 (4%)
Query: 341 QQISNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLH---SEKQERRTRNKDRPDRAA 397
Q SNLEKDKRPPRP H LV+KD NG DDKV+ NDLH +EKQERRTRNKDRPDR
Sbjct: 1 MQTSNLEKDKRPPRPPHA-LVLKDANGTPDDKVVGNDLHGFPNEKQERRTRNKDRPDRVV 59
Query: 398 WTLRRSDGSYQSDESLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSH 457
WTLRRS+GSY SDESLSSSA + S DSS+ N GD K D N+RSGEVKA+G GRS+H
Sbjct: 60 WTLRRSEGSYASDESLSSSAYLSTQSGFDSSQVNHGDVKADTLNLRSGEVKALGSGRSNH 119
Query: 458 SSVDNGSHRHIGRRGPTH-VKD-DGSPVMSEGKPLRRGGASGYGSHEKQ 504
SS+DNGSH+H GRRGP H V+D DGS V EGK L+RGGASGYGSHE Q
Sbjct: 120 SSLDNGSHKHSGRRGPPHPVRDADGSTV--EGKSLKRGGASGYGSHEVQ 166
>gi|255539410|ref|XP_002510770.1| conserved hypothetical protein [Ricinus communis]
gi|223551471|gb|EEF52957.1| conserved hypothetical protein [Ricinus communis]
Length = 423
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 140/204 (68%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVV+R+LPP+++Q Q +NW FR +S K+ +RAY++FK P D +
Sbjct: 14 KVVIRHLPPSLSQSHLFSQFHHLLLLSFNWFCFRPPNSSHKNHRYSRAYIEFKSPADAGQ 73
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKP 128
FA F+GH+FV++ G QFK IVEYAPSQRVPK KDGREGT+ DP+YLEFL+ I+KP
Sbjct: 74 FAHLFHGHLFVDDNGAQFKAIVEYAPSQRVPKPSPVKDGREGTIYTDPDYLEFLKLIAKP 133
Query: 129 VENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRRASG 188
V+NLPSA +Q + +A ++GAAKE I TPLM+FVRQKRAA+ G + L K S+RA
Sbjct: 134 VDNLPSASVQFQIEDAAQSGAAKEPPITTPLMEFVRQKRAAEDGNQGSLVAVKGSKRAGS 193
Query: 189 SSTGSPASGSSKRGSDKKKASTTM 212
+S P S ++KRG++KKK S M
Sbjct: 194 ASVIKPGSSANKRGAEKKKVSGGM 217
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 144/345 (41%), Gaps = 90/345 (26%)
Query: 204 DKKKASTTMYVLRDTAKNSSGKDKSTYILVP-------KRDDQDFDK----PVSSSSATG 252
D +++ + + D A+ SG K I P KR +D ++ V S G
Sbjct: 135 DNLPSASVQFQIEDAAQ--SGAAKEPPITTPLMEFVRQKRAAEDGNQGSLVAVKGSKRAG 192
Query: 253 SEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSASVKTIISSPALKQNQR 312
S V++ G AN G +KK +VSG + Q S S A K++QR
Sbjct: 193 SASVIKP-GSSANKRGAEKK------------KVSGGMLQQPGDSP----VSTAPKRSQR 235
Query: 313 RENSGRIIRGILLNKDARQNQ---ASGLHSEQQISNLEKDKRPPRPSHVQLVM------- 362
S II+ ILLN + Q+Q A+ E Q +E K+ PRP + Q+ +
Sbjct: 236 LRASEMIIKSILLNNETHQSQSLNATQHRHETQNLIVEHGKKWPRPMNKQVAINGHVPGS 295
Query: 363 KDTNGVSDDKVIVND----------LHSEKQERRTRNKDRPDRAAWT-LRRSDGSYQSDE 411
+ + + D N+ + S +++ KDRPD W L S ++E
Sbjct: 296 EPSGPIYDGDTKRNNSKFLTKGRYSVGSASAKQQKCIKDRPDPGVWAPLCHSVVQSDNEE 355
Query: 412 SLSSSASQLSLSAVDSSEGNLGDGKFDLSNMRSGEVKAVGGGRSSHSSVDN-GSHRHIGR 470
LSS+ Q HS +++ GSH+H G
Sbjct: 356 KLSSTLLQ-------------------------------------HSGMNSKGSHKHFGH 378
Query: 471 R-GPTHVKDDGSPVMSEGKPLRRGGASGYGSHEKQVWVQKSSSGS 514
+K DGS + SE K +RGGASGYG +KQVWVQKS+SGS
Sbjct: 379 NVAAQRMKGDGSRIASEHKSSKRGGASGYGVQKKQVWVQKSASGS 423
>gi|144583661|gb|ABP01544.1| UPF3, partial [Nicotiana attenuata]
Length = 168
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/169 (64%), Positives = 137/169 (81%), Gaps = 3/169 (1%)
Query: 100 KQWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPL 159
K WSKKD RE T+LKDPEYLEFLEF++KPVENLPSAEIQLER+EAERAG+AK+A IVTPL
Sbjct: 1 KHWSKKDAREATILKDPEYLEFLEFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPL 60
Query: 160 MDFVRQKRAAKAGPRRLLSNGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTA 219
MD++RQKRAAK G RR +SNG+ ++R G+S+ +P+S +SKRGS+ K+ STTMYVLRD++
Sbjct: 61 MDYIRQKRAAKGGARRSISNGRSTKRVGGASSRTPSSAASKRGSE-KRTSTTMYVLRDSS 119
Query: 220 KNSSGKDKSTYILVPKRDDQDF-DKPVSSSSATGSEVVLEESGVPANSD 267
K +GKDKS YILVPKRDDQ DK +S+ +G ++V E G +D
Sbjct: 120 KAGNGKDKS-YILVPKRDDQQLSDKSGTSAPGSGIDLVEGEIGRSVTAD 167
>gi|224119916|ref|XP_002331094.1| predicted protein [Populus trichocarpa]
gi|222872822|gb|EEF09953.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 101/112 (90%)
Query: 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
G D+TKVVVR+LPP ++QP F EQID AF GRYNW+S+R GK+SQKHQSC+RAY+DFK+
Sbjct: 4 GQSDKTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSYRPGKSSQKHQSCSRAYIDFKR 63
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
P+DV++FAEFFNGH+FVNEKG QFK IVEYAPSQ VPKQWSKKDGREGT+LK
Sbjct: 64 PDDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILK 115
>gi|296081104|emb|CBI18298.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 85/133 (63%), Gaps = 32/133 (24%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKGPLDRTKV+VR+LPP I + AF EQI+ F GRY V FR GK SQ+ QS +RAYLDF
Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAEFF+GHVFVNE KDPEYLE
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNE--------------------------------KDPEYLE 88
Query: 121 FLEFISKPVENLP 133
FLE ++KP ENLP
Sbjct: 89 FLELLAKPFENLP 101
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/112 (59%), Positives = 78/112 (69%), Gaps = 6/112 (5%)
Query: 250 ATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSAS-VKTIISSPALK 308
+G+E + EESGV D GKKKVLLLKGKEREIS + Q S VK I+ + + K
Sbjct: 127 TSGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH---HLQQQNVTSPVKNILGANSPK 183
Query: 309 QNQRRENSGRIIRGILLNKDARQNQASGLHSEQ--QISNLEKDKRPPRPSHV 358
QNQRRE SGRIIR ILLNKDARQ+Q+S S Q Q SNLEK+KRPPRP +
Sbjct: 184 QNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPPRPPQL 235
>gi|168003533|ref|XP_001754467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694569|gb|EDQ80917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 987
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 152/361 (42%), Gaps = 147/361 (40%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGK--------------- 45
MK RTKV VR+LPP++++ F +QI G + G Y W S+ GK
Sbjct: 26 MKEQQARTKVAVRHLPPSLSEAVFQDQIAGKYAGAYTWWSYHPGKNRSSRKRRQYVAHNP 85
Query: 46 -----------TSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEK------------ 82
S K Q +RAY++FKKPEDV++F E FNGHVFVNE+
Sbjct: 86 RNQFDAVGAIACSHKRQVYSRAYINFKKPEDVIDFYEDFNGHVFVNERVMDFCKHWNEGI 145
Query: 83 ----------------------------------------GVQFKTIVEYAPSQRVPKQW 102
G Q+K +VEYAP QRVPK
Sbjct: 146 FHFFCVGHHKLEVESGCDYTLVSRFLMLGDSSRTERLEECGAQYKALVEYAPYQRVPKPR 205
Query: 103 SKKDGREGTLLKDPEYLEFLE-FISKP-----------------VENL------------ 132
SKKD REGT+ K + I+ P +ENL
Sbjct: 206 SKKDVREGTIFKGATMIVITTVLINAPTIPTEPFDFSVPQEAFRLENLNHYSEVGNRSCS 265
Query: 133 -----------------------------PSAEIQLERREAERA-----GAAKEALIVTP 158
PSAEIQLERREAE+A G +K+A++VTP
Sbjct: 266 SILIGLCPGCADPEYLAFVEQLAKPAEYLPSAEIQLERREAEKAASLVSGTSKDAVVVTP 325
Query: 159 LMDFVRQKRAAKAGPRRLL-SNGKLSRRASGSSTGSPAS----GSSKRGSDKKKASTTMY 213
LM+FVR +RAAK+ P+ +L S+ L A G G AS S KR S+K ++ ++ Y
Sbjct: 326 LMEFVRSRRAAKSIPQVILPSSVSLFGMAMGDLEGVSASAYSLASQKRSSEKGRSGSSSY 385
Query: 214 V 214
Sbjct: 386 A 386
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 68/150 (45%), Gaps = 27/150 (18%)
Query: 308 KQNQRRENSGRII-RGILLNKDARQNQASGLHSEQQISNLEKD---KRPPRPSHVQLVMK 363
KQN R+E+ GRI RG L + S ++ S + + KRPPRP ++L K
Sbjct: 586 KQNHRQESGGRISPRGSLPQGSSSPGAGSDHQAQSHASGTQVERVGKRPPRPQAIRLAGK 645
Query: 364 DT---------------NG-------VSDDKVIVNDLHSEKQE-RRTRNKDRPDRAAWTL 400
D NG V D V V SEKQ+ RR RNKDRPDR WT
Sbjct: 646 DQAVSLLSSAEAEGQGGNGEEWSVKHVGSDGVAVTPSSSEKQDARRLRNKDRPDRPVWTP 705
Query: 401 RRSDGSYQSDESLSSSASQLSLSAVDSSEG 430
RR +G + +S+ S S S++G
Sbjct: 706 RRREGVTGKADGAASTNGVTSASGGSSTDG 735
>gi|296081100|emb|CBI18294.3| unnamed protein product [Vitis vinifera]
Length = 273
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/133 (54%), Positives = 83/133 (62%), Gaps = 32/133 (24%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MKGPLDRTKV+VR+LPP I++ AF EQID F RY V F GK SQ+ QS +RAYLDF
Sbjct: 1 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K+PEDV+EFAEFF+GHVFVNE KDPEYLE
Sbjct: 61 KRPEDVIEFAEFFDGHVFVNE--------------------------------KDPEYLE 88
Query: 121 FLEFISKPVENLP 133
LE ++KP ENLP
Sbjct: 89 SLELLAKPFENLP 101
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 79/112 (70%), Gaps = 6/112 (5%)
Query: 250 ATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQVSGSVSHQQSAS-VKTIISSPALK 308
+G+E + EESGV D GKKKVLLLKGKEREIS + Q S VK I+ + A K
Sbjct: 127 TSGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH---HLQQQNVTSPVKNILGANAPK 183
Query: 309 QNQRRENSGRIIRGILLNKDARQNQASGLHSEQ--QISNLEKDKRPPRPSHV 358
QNQRRE SGRIIR ILLNKDARQ+Q+S SEQ Q SNLEK+KRPPRP +
Sbjct: 184 QNQRREGSGRIIRSILLNKDARQSQSSMFQSEQQSQASNLEKEKRPPRPPQL 235
>gi|302781276|ref|XP_002972412.1| hypothetical protein SELMODRAFT_97155 [Selaginella moellendorffii]
gi|300159879|gb|EFJ26498.1| hypothetical protein SELMODRAFT_97155 [Selaginella moellendorffii]
Length = 118
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK PL RTKVVVR LPP +++ A +I F Y W+ FR GK++ +Q +RAY++F
Sbjct: 1 MKDPLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKST--NQIHSRAYIEF 58
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
++PEDVL F E F+GHVFVNEKG Q+K +VEYAP QRVP KKDGREG++L+
Sbjct: 59 ERPEDVLAFHEDFHGHVFVNEKGSQYKAMVEYAPYQRVPDLRVKKDGREGSILR 112
>gi|302804985|ref|XP_002984244.1| hypothetical protein SELMODRAFT_119852 [Selaginella moellendorffii]
gi|300148093|gb|EFJ14754.1| hypothetical protein SELMODRAFT_119852 [Selaginella moellendorffii]
Length = 118
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 83/114 (72%), Gaps = 2/114 (1%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
M+ PL RTKVVVR LPP +++ A +I F Y W+ FR GK++ +Q +RAY++F
Sbjct: 1 MRDPLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKST--NQIHSRAYIEF 58
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
++PEDVL F E F+GHVFVNEKG Q+K +VEYAP QRVP KKDGREG++L+
Sbjct: 59 ERPEDVLAFHEDFHGHVFVNEKGSQYKAMVEYAPYQRVPDLRVKKDGREGSILR 112
>gi|384246467|gb|EIE19957.1| hypothetical protein COCSUDRAFT_44353 [Coccomyxa subellipsoidea
C-169]
Length = 382
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPE 64
++RTKVV+R LPP+I E +D + +YNW SF QGKTS + +R Y++F+ P
Sbjct: 1 MERTKVVIRKLPPSIADADVRELVD-STNVKYNWFSFVQGKTSVRKVVHSRCYVNFEDPS 59
Query: 65 DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEF 124
D+ F H FV ++G QF++ VEYAP Q+VP+ K+D REGTL KDPEYL F+E
Sbjct: 60 DIPAFKAAVEAHAFVTDRGAQFRSSVEYAPFQKVPQGKPKRDPREGTLDKDPEYLAFVES 119
Query: 125 I 125
+
Sbjct: 120 L 120
>gi|427784231|gb|JAA57567.1| Putative regulator of nonsense transcripts 3a [Rhipicephalus
pulchellus]
Length = 489
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 108/174 (62%), Gaps = 7/174 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVVVR LPP +T+ F EQI Y + F +G S + +RAY++F +++
Sbjct: 33 TKVVVRRLPPTMTEDQFLEQISPVPESDYMY--FVKGDLSLGPHAFSRAYINFVNQDEIF 90
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS-KKDGREGTLLKDPEYLEFLEFIS 126
F E F+ ++FV+EKG ++ +VEYAP Q++PK+ + KKD + GT+ +DPEY+ FLE +
Sbjct: 91 IFKEKFDDYIFVDEKGNEYPALVEYAPFQKIPKRRNRKKDPKCGTIEQDPEYINFLESLE 150
Query: 127 KPVE-NLPSAEIQLERREA-ERAGAAKEAL--IVTPLMDFVRQKRAAKAGPRRL 176
+P E LPS + +E EA E+ A +VTPL+++++Q++ K ++L
Sbjct: 151 QPEEVTLPSIDTYIEEIEAREKEIKANNGCLKVVTPLIEYLQQRKLEKLAAQKL 204
>gi|427784155|gb|JAA57529.1| Putative regulator of nonsense transcripts 3a [Rhipicephalus
pulchellus]
Length = 415
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 105/168 (62%), Gaps = 7/168 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVVVR LPP +T+ F EQI Y + F +G S + +RAY++F +++
Sbjct: 33 TKVVVRRLPPTMTEDQFLEQISPVPESDYMY--FVKGDLSLGPHAFSRAYINFVNQDEIF 90
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS-KKDGREGTLLKDPEYLEFLEFIS 126
F E F+ ++FV+EKG ++ +VEYAP Q++PK+ + KKD + GT+ +DPEY+ FLE +
Sbjct: 91 IFKEKFDDYIFVDEKGNEYPALVEYAPFQKIPKRRNRKKDPKCGTIEQDPEYINFLESLE 150
Query: 127 KPVE-NLPSAEIQLERREA-ERAGAAKEAL--IVTPLMDFVRQKRAAK 170
+P E LPS + +E EA E+ A +VTPL+++++Q++ K
Sbjct: 151 QPEEVTLPSIDTYIEEIEAREKEIKANNGCLKVVTPLIEYLQQRKLEK 198
>gi|255570970|ref|XP_002526436.1| phosphoribosylamine--glycine ligase [Ricinus communis]
gi|223534216|gb|EEF35931.1| phosphoribosylamine--glycine ligase [Ricinus communis]
Length = 292
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 85/122 (69%), Gaps = 5/122 (4%)
Query: 275 LLKGKEREISQVSGSVSHQQSASVKTIISSPALKQNQRRENSGRIIRGILLNKDARQNQA 334
L+ G ++ ++SG +S Q + S ++S +KQ Q+ E SGRIIR ILLNKD+RQNQ+
Sbjct: 99 LVAGLANDLVKLSGGMSKQNAPSFDKNVTSSTIKQRQQHEASGRIIRNILLNKDSRQNQS 158
Query: 335 SGLHSEQQI--SNLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLH---SEKQERRTRN 389
S + SEQQI SNLEK+KR RP QLV+KD NG SDDK + NDLH EKQE+ TRN
Sbjct: 159 SRVQSEQQIQSSNLEKEKRLQRPPRGQLVLKDVNGSSDDKFVGNDLHGFSGEKQEKLTRN 218
Query: 390 KD 391
KD
Sbjct: 219 KD 220
>gi|159465777|ref|XP_001691099.1| UPF3 protein [Chlamydomonas reinhardtii]
gi|158279785|gb|EDP05545.1| UPF3 protein [Chlamydomonas reinhardtii]
Length = 371
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
MK P +TKV+VR LPPA+++ F +D GRYNW+S+ GK S K + +RAY++F
Sbjct: 1 MKPPRQKTKVLVRKLPPAMSEDTFKSVLDSVAAGRYNWLSYYAGKVSLKRVASSRAYINF 60
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTL 112
EDV F + F+GHVF++ +G Q++ VEYAP Q++P +K EGT+
Sbjct: 61 VSEEDVYNFKQRFDGHVFISRQGNQYRCAVEYAPLQKMPTLEAKPHPLEGTI 112
>gi|410914359|ref|XP_003970655.1| PREDICTED: regulator of nonsense transcripts 3B-like [Takifugu
rubripes]
Length = 452
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 104/162 (64%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP++T+ EQ+ +++ F TS ARAY++F+ ED++
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSNDTSLFPHLFARAYINFRNQEDIV 93
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++++G ++ +VE+AP Q+ K+ +KK D + GT+++DPEY +FLE+ +
Sbjct: 94 LFRDRFDGYVFIDKRGQEYPAVVEFAPFQKTAKKRNKKRDAKCGTIIEDPEYKKFLEYYN 153
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E L S+ EI LE EA+ + AK++ TPL+DF++ K
Sbjct: 154 GDEEKLTSSPEILLEELEAKSKELVAKKS---TPLLDFLKNK 192
>gi|390348029|ref|XP_780145.3| PREDICTED: uncharacterized protein LOC574684 [Strongylocentrotus
purpuratus]
Length = 373
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 97/161 (60%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPPA+T+ F E +D Y + + + S + +RAY++F K ED++
Sbjct: 16 TKVVIRCLPPALTEEEFREIVDPFPDNEYFY--YVKADRSLGEHAYSRAYINFMKEEDII 73
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + ++GH FVN +G+ + +VE+AP Q+VPK KK D R T+ +D +Y +F+E ++
Sbjct: 74 PFRDTWDGHEFVNGQGLVYPAVVEFAPYQKVPKVIGKKVDARTATIEEDSDYKKFVETLN 133
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
+E+ SAE LE E K ++TPL++F++ KR
Sbjct: 134 AEIEHPTSAETMLEEIEMRAKEPGK---VMTPLIEFLKVKR 171
>gi|241723783|ref|XP_002404304.1| regulator of nonsense transcripts 3B, putative [Ixodes scapularis]
gi|215505390|gb|EEC14884.1| regulator of nonsense transcripts 3B, putative [Ixodes scapularis]
Length = 452
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 88/135 (65%), Gaps = 4/135 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +++ F +QI Y + F +G S + +RAY++F E++
Sbjct: 33 TKVVIRRLPPTMSEDQFLDQISPVPENDYMY--FVKGNKSLGPNAFSRAYINFINQEEIF 90
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS-KKDGREGTLLKDPEYLEFLEFIS 126
F E F+ +VF++EKG ++ IVEYAP Q++PK+ + KKD + GT+ +DPEYL+FLE +
Sbjct: 91 IFKEKFDEYVFLDEKGNEYPAIVEYAPFQKIPKRRTRKKDPKCGTIEQDPEYLKFLESLE 150
Query: 127 KPVE-NLPSAEIQLE 140
+P E +LPS + +E
Sbjct: 151 QPEEVSLPSIDTYIE 165
>gi|47226207|emb|CAG08354.1| unnamed protein product [Tetraodon nigroviridis]
Length = 503
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 100/163 (61%), Gaps = 10/163 (6%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP++T+ EQ+ +++ F TS ARAY++F+ ED++
Sbjct: 37 TKIVIRRLPPSLTKEELKEQLQPL--PEVDYLEFFSNDTSLFPHLFARAYINFQNQEDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++++G ++ +VE+AP Q+ K+ SKK D + GT+ +DPEY +FLEF +
Sbjct: 95 LFRDRFDGYVFIDKRGQEYPAVVEFAPFQKTAKKRSKKRDAKCGTINEDPEYKKFLEFYN 154
Query: 127 KPVENLPSA-EIQLERREA--ERAGAAKEALIVTPLMDFVRQK 166
E S+ EI LE EA + GA K TPL+DF++ K
Sbjct: 155 GDEEKFTSSPEILLEELEAKSKELGAKK----STPLLDFLKNK 193
>gi|225707714|gb|ACO09703.1| Regulator of nonsense transcripts 3B [Osmerus mordax]
Length = 297
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP++T+ EQ+ +++ F TS ARAY++FK ED++
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSSDTSMYPHLFARAYINFKNQEDIV 93
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q++ K+ SKK D + GT+ +DPEY +FLE+ +
Sbjct: 94 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKIAKKRSKKRDAKSGTIDEDPEYKKFLEYYN 153
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E S E LE EA+ + AK+ TPL+DF++ K+
Sbjct: 154 ADDEKFTSTPETLLEEIEAKSKELVAKKP---TPLLDFLKNKQ 193
>gi|260796733|ref|XP_002593359.1| hypothetical protein BRAFLDRAFT_70868 [Branchiostoma floridae]
gi|229278583|gb|EEN49370.1| hypothetical protein BRAFLDRAFT_70868 [Branchiostoma floridae]
Length = 529
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 11/165 (6%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP++TQ E++ G +++ F S + RAY++FK PE+++
Sbjct: 36 TKVVIRRLPPSLTQETLVEEL-GPLPD-HDFFLFVAADMSLVPHAFCRAYINFKNPEEII 93
Query: 68 EFAEFFNGHVFVNE----KGVQFKTIVEYAPSQRVPKQWS-KKDGREGTLLKDPEYLEFL 122
F + F+G++F + K +++ IVE+AP Q+VPK S KKD + T+ +DP+YL+FL
Sbjct: 94 SFKDKFDGYIFNDTTSSGKKMEYPAIVEFAPYQKVPKGRSKKKDTKCATIEQDPDYLKFL 153
Query: 123 EFISKP-VENLPSAEIQ--LERREAERAGAAKEALIVTPLMDFVR 164
E + + P A I+ LE EA R +E + TPL+DF++
Sbjct: 154 ESLKNDNTGDAPPANIESLLEEIEA-RDRKKEETKMTTPLLDFIK 197
>gi|224119920|ref|XP_002331095.1| predicted protein [Populus trichocarpa]
gi|222872823|gb|EEF09954.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 76/103 (73%), Gaps = 2/103 (1%)
Query: 160 MDFVRQKRAAKAGPRRLLSNGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTA 219
M+F+RQKRAAK+GPRR+LSNGK SRRA GS + S +S S+KK+ASTTMYVLRDT
Sbjct: 1 MEFIRQKRAAKSGPRRILSNGKPSRRAGGSGSPSSSSSKRG--SEKKRASTTMYVLRDTV 58
Query: 220 KNSSGKDKSTYILVPKRDDQDFDKPVSSSSATGSEVVLEESGV 262
K +SGK+KS Y VPK DD+ K V+ S +G+EV EE+ V
Sbjct: 59 KGTSGKEKSIYAQVPKLDDRQLSKAVTLGSGSGTEVSEEETAV 101
>gi|449669494|ref|XP_002161632.2| PREDICTED: uncharacterized protein LOC100202729 [Hydra
magnipapillata]
Length = 555
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 76/123 (61%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
RAY++F + DVL+F F+G++F + G +F ++EYAP Q++P+ K D + T
Sbjct: 78 TRAYVNFIEYNDVLDFRNKFDGYIFYDNLGNEFSAVIEYAPCQQIPRTKQKIDQKINTFD 137
Query: 114 KDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGP 173
KDPEYL+FLE + K VE LPSAE +E +A K TPL D++++KR ++
Sbjct: 138 KDPEYLQFLENLGKQVELLPSAEKYIEELQALTIADKKREKTRTPLTDYLKEKRDSRIAA 197
Query: 174 RRL 176
R+L
Sbjct: 198 RQL 200
>gi|307110922|gb|EFN59157.1| hypothetical protein CHLNCDRAFT_50004 [Chlorella variabilis]
Length = 119
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDV 66
R KVVVR LPP++ + AF + + R +W S+ QGK S K +RAYL FK DV
Sbjct: 6 RCKVVVRRLPPSLQEEAFRGAV-REWIERADWFSYVQGKASSKDLLHSRAYLRFKDAADV 64
Query: 67 LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYL 119
F + ++GH FVNE+G QF+ VEYA QRVP+Q K+D +EGT+ +D +YL
Sbjct: 65 PRFQQAWDGHAFVNERGTQFRCQVEYAAYQRVPRQRVKRDPKEGTIERDADYL 117
>gi|91076870|ref|XP_974984.1| PREDICTED: similar to Upf3 regulator of nonsense transcripts-like
protein B [Tribolium castaneum]
gi|270001957|gb|EEZ98404.1| hypothetical protein TcasGA2_TC000872 [Tribolium castaneum]
Length = 450
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP + Q F QI Y+++ +G S S +RAY++F P D+
Sbjct: 27 TKVVIRRLPPNMDQETFLNQISPV--PSYDYLYMVKGDASLGENSFSRAYINFVNPNDIY 84
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSK--KDGREGTLLKDPEYLEFLEFI 125
+F E F+ +VF++ G ++ +VE+A Q++PK+ +K D + GT+ DP YLEF+E I
Sbjct: 85 DFKEKFDNYVFLDSAGHEYAAVVEFAAFQKIPKRRNKVRVDPKVGTIESDPYYLEFVEMI 144
Query: 126 SKPVE--NLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
+KP E P Q+ + TPL+++V+ KR
Sbjct: 145 NKPPEPDEKPEYSYQI--------TTENKNETSTPLLEYVKNKRV 181
>gi|328782059|ref|XP_003250077.1| PREDICTED: hypothetical protein LOC552225 isoform 1 [Apis
mellifera]
Length = 623
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 95/169 (56%), Gaps = 13/169 (7%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +TQ F EQ+ +++ F + S + ARAY++F + +D+
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPEN--DYLYFVKADMSMGQYAFARAYINFVEQQDIF 97
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS--KKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VF++ KG ++ +VE+AP QR+PK+ + KKD + GT+ DP Y+ FLE
Sbjct: 98 MFREKFDNYVFIDSKGTEYPAVVEFAPFQRLPKKRTGKKKDLKCGTIESDPYYISFLE-- 155
Query: 126 SKPVENLPSAEIQLERREAERA----GAAKEALIVTPLMDFVRQKRAAK 170
AE + + + E + + + TPL+++V+Q++ K
Sbjct: 156 ---TRKNQEAESNISQPKTEYSYQPPDNTPKKITTTPLLEYVKQRKQEK 201
>gi|328782061|ref|XP_624605.3| PREDICTED: hypothetical protein LOC552225 isoform 2 [Apis
mellifera]
Length = 614
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 95/169 (56%), Gaps = 13/169 (7%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +TQ F EQ+ +++ F + S + ARAY++F + +D+
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPEN--DYLYFVKADMSMGQYAFARAYINFVEQQDIF 97
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS--KKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VF++ KG ++ +VE+AP QR+PK+ + KKD + GT+ DP Y+ FLE
Sbjct: 98 MFREKFDNYVFIDSKGTEYPAVVEFAPFQRLPKKRTGKKKDLKCGTIESDPYYISFLE-- 155
Query: 126 SKPVENLPSAEIQLERREAERA----GAAKEALIVTPLMDFVRQKRAAK 170
AE + + + E + + + TPL+++V+Q++ K
Sbjct: 156 ---TRKNQEAESNISQPKTEYSYQPPDNTPKKITTTPLLEYVKQRKQEK 201
>gi|321460861|gb|EFX71899.1| hypothetical protein DAPPUDRAFT_216440 [Daphnia pulex]
Length = 430
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 110/409 (26%), Positives = 187/409 (45%), Gaps = 77/409 (18%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KV++R LPP +T+ F EQI ++ F +G+ + +RAY++F E++
Sbjct: 30 SKVIIRRLPPTMTEEVFLEQISPLPDN--DFFYFVKGEQQFGVPTFSRAYINFLNLEEIF 87
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSK--KDGREGTLLKDPEYLEFLEFI 125
F + F+G+VF+++KG ++ +VE+AP QR+P+ K+ + T+ DP YLEFL+ +
Sbjct: 88 TFQDKFDGYVFLDQKGTEYPAVVEFAPYQRIPRHQEPGAKEDKCNTIDNDPHYLEFLKKL 147
Query: 126 SKPVE-NLPSAEI---QLERREAERAGAAKEALIVTPLMDFVRQKR-------AAKAGPR 174
+P E L SAE QLE RE E A A + TPL++F+ Q+R K R
Sbjct: 148 EQPDEIVLQSAETYLEQLELRERE-IKANGHAKVTTPLVEFIHQRRLDREKFREEKKDER 206
Query: 175 RLLSNGK--------LSRRASGSSTGSPASGSSKRGS-DKKKASTTMYVLRDTAKNSSGK 225
R K LS++ G S++G + + + VLR+T + +
Sbjct: 207 RRKEFDKKKQRELERLSKKRDGKKEDKKQDKPSQKGKKEDDRPHNQVKVLRNTERET--- 263
Query: 226 DKSTYILVPKRDDQDFDKPVSSSSATGSEVVLEESGVPANSDGGKKKVLLLKGKEREISQ 285
+ + A+ +V E G D K+K L K K+R + +
Sbjct: 264 -------------------LEKAEASAKKVAKE--GSRPKLDKPKEK--LDKPKDRIVRE 300
Query: 286 VSGSVSHQQSASVKTIISS-PALKQNQRRENSGRIIRGILLNKDARQNQASGLHSEQQIS 344
S +++ + ++ S+ P +KQ +++ I + + + + +N SG S
Sbjct: 301 KSKPKMEKKAVAESSVDSNKPDVKQETQQQPKKTIPKEEVTS--SSENPGSGATS----- 353
Query: 345 NLEKDKRPPRPSHVQLVMKDTNGVSDDKVIVNDLHSEKQERRTRNKDRP 393
P+P + G S K +D S +ER+ RNKDRP
Sbjct: 354 --------PKPE-------EEKGSSRKK---HDNDSADKERKIRNKDRP 384
>gi|430813479|emb|CCJ29190.1| unnamed protein product [Pneumocystis jirovecii]
Length = 395
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 95/172 (55%), Gaps = 11/172 (6%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGG-RYNWVSFRQGKTS---QKHQSCARAYLD 59
P R KVV+R LPP +++ F E + R W SF GK S K+ ARAY+
Sbjct: 19 PATRLKVVIRYLPPDLSEQTFKELVKEWIDEERVEWSSFYPGKVSSNRNKNDKYARAYIK 78
Query: 60 FKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPK-QWSKKDGREGTLLKDPEY 118
FK PE ++ F + F H+F +EKG + +VE+AP Q+VP+ + K D R+GT+ D E+
Sbjct: 79 FKSPEALIAFHKGFGAHLFTDEKGKGQRVLVEFAPFQKVPRLERQKHDARQGTIDDDAEF 138
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVR-QKRAA 169
+ F E + +N P E Q ++ E + A +TPL++++R QK A
Sbjct: 139 IAFQETLKNTNKN-PEEEAQNKKEEDDMAPIG----TITPLIEYLRVQKETA 185
>gi|383862435|ref|XP_003706689.1| PREDICTED: uncharacterized protein LOC100878124 [Megachile
rotundata]
Length = 620
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +TQ F EQ+ ++++ F + S + +RAY++F + +D+
Sbjct: 40 TKVVIRRLPPTMTQDQFLEQVSPL--PEHDYLYFVKADMSMGQFAFSRAYINFIEQQDIF 97
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW--SKKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VFV+ KG ++ +VE+AP QR+PK+ KKD + GT+ DP Y+ FLE +
Sbjct: 98 MFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDPYYISFLESL 157
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
A+ + E K + TPL+++++Q++ K
Sbjct: 158 KNQEAESNVAQPKTEYSYQPPDNTPK-KVTTTPLLEYLKQRKQEK 201
>gi|242007240|ref|XP_002424450.1| Regulator of nonsense transcripts 3A, putative [Pediculus humanus
corporis]
gi|212507850|gb|EEB11712.1| Regulator of nonsense transcripts 3A, putative [Pediculus humanus
corporis]
Length = 720
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 21/175 (12%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVV+R LPP +T+ AF E+ +++ F +G + + +RAY++F +D+
Sbjct: 52 KVVIRRLPPKLTKEAFCEEFSPL--PPHDYFHFVRGDLNLGSHAFSRAYINFINQKDIFS 109
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ--WSKKDGREGTLLKDPEYLEFLE--- 123
F E ++ + ++KG + +VE+AP Q++PK+ KK + GTL DP+Y+EFL
Sbjct: 110 FKEKYDDYDIQDDKGRTYHAVVEFAPFQKIPKRKVLKKKSSKAGTLESDPKYVEFLHKLE 169
Query: 124 ----FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPR 174
FI+ P E E A K +I TPL++F+++KR K R
Sbjct: 170 ESKNFINNPSEYFHETE----------NPALKAKVITTPLLEFLKKKRQKKIDLR 214
>gi|350408566|ref|XP_003488445.1| PREDICTED: hypothetical protein LOC100743974 isoform 1 [Bombus
impatiens]
gi|350408569|ref|XP_003488446.1| PREDICTED: hypothetical protein LOC100743974 isoform 2 [Bombus
impatiens]
Length = 620
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 13/169 (7%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +TQ F EQ+ ++++ F + S + +RAY++F + +D+
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPL--PEHDYLYFVKADMSLGQYAFSRAYINFVEQQDIF 97
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW--SKKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VFV+ KG ++ +VE+AP QR+PK+ KKD + GT+ D Y+ FLE +
Sbjct: 98 MFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCGTIESDSYYISFLESL 157
Query: 126 SKPVENLPSAEIQLERREAERA----GAAKEALIVTPLMDFVRQKRAAK 170
AE + + + E + + + TPL+++V+Q++ K
Sbjct: 158 KN-----QEAESNVSQPKTEYSYQPPDNTPKKVTTTPLLEYVKQRKQEK 201
>gi|391331227|ref|XP_003740051.1| PREDICTED: uncharacterized protein LOC100906049 [Metaseiulus
occidentalis]
Length = 497
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 9/161 (5%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
K+VVR +PP++T+ F Q ++ F S S +RAY+ + +DVLE
Sbjct: 34 KIVVRRMPPSMTETDFLNQFSPL--PEHDSYYFADADGSMGGNSFSRAYIALRSHQDVLE 91
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEF--I 125
F + ++ +V ++E+G ++ +VE+AP Q++P++ KK D + GTL DPEYLEFLE +
Sbjct: 92 FRDKWDDYVCLDERGQEYPLVVEFAPFQKMPRKKPKKADSKCGTLENDPEYLEFLETMDL 151
Query: 126 SKPVENLPSAEI---QLERREAERAGAAKEALIVTPLMDFV 163
+ +E LPS E +LERR+ E ++TPL++FV
Sbjct: 152 EEGIE-LPSMETTVEELERRDRELRANNGVPNVLTPLIEFV 191
>gi|332030560|gb|EGI70248.1| Regulator of nonsense transcripts 3A [Acromyrmex echinatior]
Length = 596
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 98/171 (57%), Gaps = 17/171 (9%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP++TQ F EQ+ ++++ F + S S +RAY++F + +D+
Sbjct: 45 TKVVIRRLPPSMTQDQFLEQVSPL--PVHDYLYFVKADMSLGQFSFSRAYINFVEQQDIF 102
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW--SKKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VF++ KGV++ +VE+AP QR+PK+ KKD + GT+ D Y+ FL
Sbjct: 103 MFREKFDNYVFLDSKGVEYPAVVEFAPFQRLPKKRMGKKKDVKCGTIESDSYYISFL--- 159
Query: 126 SKPVENLPSAEIQLERREAERAGAAK------EALIVTPLMDFVRQKRAAK 170
ENL + EI +++ + + + + TPL+++++ ++ K
Sbjct: 160 ----ENLKNQEIDSSVAQSKTEYSYQPPDNTVKKITTTPLLEYLKLRKQEK 206
>gi|302828730|ref|XP_002945932.1| hypothetical protein VOLCADRAFT_48819 [Volvox carteri f.
nagariensis]
gi|300268747|gb|EFJ52927.1| hypothetical protein VOLCADRAFT_48819 [Volvox carteri f.
nagariensis]
Length = 90
Score = 95.9 bits (237), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/90 (47%), Positives = 60/90 (66%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+RNLPP +T F ++ GGRY W+S+ GK S K +RAY++F EDV
Sbjct: 1 TKVVIRNLPPGMTDDTFKTVLESLAGGRYTWLSYFPGKVSLKRVVFSRAYVNFLTAEDVY 60
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQR 97
+F + F+GHVF+ +KG Q++ VEYAP Q+
Sbjct: 61 DFKQRFDGHVFIGQKGHQYRCSVEYAPLQK 90
>gi|157137885|ref|XP_001664060.1| hypothetical protein AaeL_AAEL003735 [Aedes aegypti]
gi|108880729|gb|EAT44954.1| AAEL003735-PA, partial [Aedes aegypti]
Length = 514
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 29/181 (16%)
Query: 3 GPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
P TKVV+R LPP++ + F +QI+ ++ F G S + +RAY++F K
Sbjct: 79 APRPLTKVVIRRLPPSMDEETFRKQIEPMPD--HDDFYFVSGDWSLGKNASSRAYINFTK 136
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS-KKDGREGTLLKDPEYLEF 121
ED+ F + F+G++FV+ KGV++ +VE+AP Q +P+ S KKD + GT+ D +L F
Sbjct: 137 AEDIYLFKDKFDGYIFVDAKGVEYPAVVEFAPFQELPRNRSRKKDIKCGTIETDTHFLAF 196
Query: 122 LEFISKPVENLPSAEIQLERREAERAGAAK------------EALIVTPLMDFVRQKRAA 169
E LE E + AG +K E + TPL++++ QK+
Sbjct: 197 KE--------------ALEAEEKDTAGKSKSKLEYTYKIKDEEKITSTPLLEYIAQKKQE 242
Query: 170 K 170
K
Sbjct: 243 K 243
>gi|312383539|gb|EFR28591.1| hypothetical protein AND_03300 [Anopheles darlingi]
Length = 685
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 8 TKVVVRNLPPAITQPAFTEQI--DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
T+VVVR+LPP +T+ F E+I +GAF ++ F S + +RAY+ F P+D
Sbjct: 73 TRVVVRHLPPTMTEEQFREEISVEGAFP-KHEEFYFVGPDWSLGMSTTSRAYIKFTNPDD 131
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ--WSKKDGREGTLLKDPEYLEFLE 123
VL F F+G+ F++ KG +F +VEYAP Q++PK SK D + T+ DP ++ F
Sbjct: 132 VLLFTHRFDGYTFLDSKGAEFLALVEYAPFQKLPKNRSRSKPDPKCNTIESDPLFIAF-- 189
Query: 124 FISKPVENLPSAEIQLER--REAERAGAAKEALIVTPLMDFVRQKRAAKAGPRR 175
K E Q R +E +E +++TPL++FV Q++ K RR
Sbjct: 190 ---KEALEEEEREAQQGRGTQEFSFNLEPEEKIVMTPLLEFVAQRKLEKRDERR 240
>gi|348515441|ref|XP_003445248.1| PREDICTED: regulator of nonsense transcripts 3B-like [Oreochromis
niloticus]
Length = 464
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 6/162 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP++T+ EQ+ +++ F TS ARAY++FK ED++
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSNDTSLYPHLFARAYINFKNQEDIV 93
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q+ K+ SKK + GT+++DP+Y +FLE+ +
Sbjct: 94 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKTAKKRSKKKDAKCGTIVEDPDYKKFLEYYN 153
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
E L S E LE EA+ A TPL+DF++ K+
Sbjct: 154 GDDEKLTSTPETLLEEIEAKSKELV--AKKTTPLLDFLKNKQ 193
>gi|307207790|gb|EFN85408.1| Regulator of nonsense transcripts 3A [Harpegnathos saltator]
Length = 694
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +TQ F EQI +++ F + S + +RAY++F +D+
Sbjct: 45 TKVVIRRLPPTMTQEQFLEQISPL--PEHDYFYFVKADMSLGQFAFSRAYINFTDQQDIF 102
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS--KKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VF++ KGV++ +VE+AP QR+ ++ KKD + GT+ D Y+ FLE +
Sbjct: 103 VFREKFDNYVFIDAKGVEYPAVVEFAPFQRLARKRHGRKKDLKCGTIESDSYYISFLESL 162
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+ A+ + E K+ + TPL+++++Q++ K
Sbjct: 163 KNQEIDSNVAQSKTEYSYQPPDNTTKK-VTTTPLLEYLKQRKQEK 206
>gi|291239911|ref|XP_002739866.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B-like
[Saccoglossus kowalevskii]
Length = 626
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 92/166 (55%), Gaps = 14/166 (8%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKV++R LPP+ T+ F E ++ + N+ F + S + +R Y++ K ED++
Sbjct: 31 TKVIIRRLPPSFTEETFKEALE--YLPHNNYFHFVKADRSLGPNAFSRVYINIVKQEDII 88
Query: 68 EFAEFFNGHVFVNEK---GVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLE 123
F + + G +F +VE AP Q++PK+ KK D + G++ DP+Y++FLE
Sbjct: 89 AFRDNHSLDKLTMTYIPLGEEFPAVVELAPYQKIPKKALKKPDVKSGSIEDDPDYVKFLE 148
Query: 124 FISKPVENLPSAEIQLE-----RREAERAGAAKEALIVTPLMDFVR 164
++ VE LPSAE LE RE E AG K+ TPL++++R
Sbjct: 149 SLNAEVEPLPSAESYLEEIEAKERELEAAGPQKK---TTPLIEYIR 191
>gi|149060022|gb|EDM10838.1| UPF3 regulator of nonsense transcripts homolog B (yeast)
(predicted) [Rattus norvegicus]
Length = 485
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNK 207
>gi|209529640|ref|NP_001129345.1| regulator of nonsense transcripts 3B [Rattus norvegicus]
Length = 472
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNK 207
>gi|148697043|gb|EDL28990.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Mus musculus]
Length = 485
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNK 207
>gi|74959788|ref|NP_080849.1| regulator of nonsense transcripts 3B [Mus musculus]
gi|74211353|dbj|BAE26432.1| unnamed protein product [Mus musculus]
Length = 472
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNK 207
>gi|405955505|gb|EKC22596.1| Regulator of nonsense transcripts 3A [Crassostrea gigas]
Length = 638
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 12 VRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAE 71
+R LPP++T + EQI +++ F + S + RAY++F P ++ F +
Sbjct: 1 MRRLPPSLTPESLIEQISPL--PEHDFFYFVKADMSLGINAFTRAYINFMNPAEIFNFRD 58
Query: 72 FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFISKPVE 130
F+G+VF++ KG ++ IVE+AP Q+VPK+ +KK D ++GTL +D +YL+F E + P
Sbjct: 59 KFDGYVFIDGKGNEYPAIVEFAPFQKVPKRKTKKPDSKKGTLEQDADYLKFKEMLESPGN 118
Query: 131 NLPSAEIQLERREAERAGAAKE----ALIVTPLMDFVRQKRAAK 170
+ P + + K TPL+++++++R K
Sbjct: 119 DDPKTIDEYLEELEAKEKEMKSNHGCVKTSTPLIEYLKKRREEK 162
>gi|170038524|ref|XP_001847099.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882242|gb|EDS45625.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 620
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 29/176 (16%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP++ + F +QID ++ F G S + +RAY++F + ED+
Sbjct: 62 TKVVIRRLPPSMDEETFRKQIDPI--PDHDDFYFVSGDWSLGKNASSRAYINFTRAEDIF 119
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS-KKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+ FV+ KGV++ +VE+AP Q +P+ S KKD + GT+ D ++ F E
Sbjct: 120 LFKDKFDGYDFVDAKGVEYPAVVEFAPFQELPRNRSRKKDAKVGTIETDTHFVAFKE--- 176
Query: 127 KPVENLPSAEIQLERREAERAGAAKEAL------------IVTPLMDFVRQKRAAK 170
LE E + AG +K L TPL++F+ QK+ K
Sbjct: 177 -----------ALEAEEKDTAGKSKSKLEYSYKIKDEKKITSTPLLEFIAQKKQEK 221
>gi|322790928|gb|EFZ15594.1| hypothetical protein SINV_80357 [Solenopsis invicta]
Length = 319
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 97/169 (57%), Gaps = 17/169 (10%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
VV+R LPP +TQ F EQ+ ++++ F + S + +RAY++F + +D+ F
Sbjct: 1 VVIRRLPPTMTQDQFLEQVSPL--PEHDYMYFVKADMSLGQFAFSRAYINFMEQQDIFMF 58
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS--KKDGREGTLLKDPEYLEFLEFISK 127
E F+ +VFV+ KGV++ +VE+AP QR+PK+ + KKD + GT+ D Y+ FL
Sbjct: 59 REKFDNYVFVDSKGVEYPAVVEFAPFQRLPKKRAGKKKDLKCGTIESDSYYISFL----- 113
Query: 128 PVENLPSAEIQLERREAERAGAAK------EALIVTPLMDFVRQKRAAK 170
ENL + EI +++ + + + ++ TPL+++++ ++ K
Sbjct: 114 --ENLKNQEIDSSVAQSKTEYSYQPPDNTVKKIMTTPLLEYLKLRKQEK 160
>gi|402225519|gb|EJU05580.1| hypothetical protein DACRYDRAFT_104067 [Dacryopinax sp. DJM-731
SS1]
Length = 469
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQKHQS---CARAYLDFKK 62
R KV+VR LPP + + F + ++ W F GK K ++ +RAY+ FK
Sbjct: 40 RLKVIVRRLPPNLPEAVFWKSVEPWVNEENTTWRIFYSGKIKPKLENENVPSRAYIMFKT 99
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFL 122
PE V +F+ +NGH F +++G + + +VE+AP Q+VP K D R+GT+ +DP+++ F+
Sbjct: 100 PEQVAQFSSAYNGHAFRDKQGRESQAVVEFAPYQKVPITNVKPDVRQGTIDQDPDFMSFM 159
Query: 123 EFISKPVE 130
++ PVE
Sbjct: 160 TNLNAPVE 167
>gi|402084290|gb|EJT79308.1| hypothetical protein GGTG_04393 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 705
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K P++ KVV+R LPP IT+ + + G + W SF+ GK S+ K +R
Sbjct: 38 KTPVEGQKVVLRRLPPGITEQETVSFLSDEWKPGGAKVGWFSFQAGKISKDPAKPSRPSR 97
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPS------QRVPKQWSKKDGRE 109
AYL K E V+ E +++ K + + P ++VP + D R
Sbjct: 98 AYLHVLKTEQVMGLVEHVRNTEWLDAKDTSASSCLVGPPMLDISIYKKVPSGKVRADARA 157
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIV----TPLMDFVRQ 165
GT+ +DPE+++FLE ++ P ++ P A+ E E LI TPL+D++R+
Sbjct: 158 GTIDQDPEFMDFLEALANPNKD-PEADYTAEE---------DEKLITKASSTPLIDYLRE 207
Query: 166 KRAAKAGPRRLLSNGKLSRRASGSSTGSPASGSSKRGSDKKKASTT 211
K+A KA +GK SR SG++ G A S KR D K +T
Sbjct: 208 KKANKAKESATGKSGKHSRHESGTAKGRSAEDSKKRTKDSKTEKST 253
>gi|114051045|ref|NP_001040320.1| Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori]
gi|87248437|gb|ABD36271.1| Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori]
Length = 499
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+++R LPP +T+ F EQ+ +++ F + + + +RAY++F ED+
Sbjct: 35 TKIILRRLPPTMTEETFWEQVSPI--PEHDYFYFAKPDPTWGNNLFSRAYINFVNVEDIF 92
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISK 127
F + F+G+VF++EKG ++ IVEYAP QR+ K+ KKD + GTL DP Y EF+E ++K
Sbjct: 93 LFRDKFDGYVFLDEKGGEYVGIVEYAPFQRISKKKKKKDPKCGTLESDPIYQEFIESLNK 152
Query: 128 --PVENLPSAE 136
VE+ P E
Sbjct: 153 DPEVESQPKLE 163
>gi|428172186|gb|EKX41097.1| hypothetical protein GUITHDRAFT_142255 [Guillardia theta CCMP2712]
Length = 350
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKP 63
P + KV +R LPPA+T+ F E ++ + +++ + K AYL F
Sbjct: 10 PRAKLKVWIRGLPPAMTEEEFKELLESITPPNNKSIDWQRLVPANKRVPTTTAYLHFSNE 69
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
E + +GH F++ KG +++ ++EYAP Q++P++ D REGT+ KD +++ F E
Sbjct: 70 EALFGLFSKLDGHKFIDAKGREYRALIEYAPYQKIPRK-KVIDKREGTIEKDADFIAFQE 128
Query: 124 FISKPVE-NLPSAEIQLERREAERAGAAKEAL-----------------IVTPLMDFVRQ 165
+ + + SAE LERRE E A AAK+ L + TPL+D++R+
Sbjct: 129 KLESELNMKVESAEAWLERREQE-AQAAKDRLKALLSAEGENGVVVHEVVHTPLLDYLRE 187
Query: 166 KR 167
K+
Sbjct: 188 KK 189
>gi|443693452|gb|ELT94809.1| hypothetical protein CAPTEDRAFT_137621, partial [Capitella teleta]
Length = 172
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 85/138 (61%), Gaps = 4/138 (2%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
++VVR LPP++T F + +++ F Q + Q+ RAY++F ED+L
Sbjct: 1 QIVVRRLPPSLTAEEFIDLTSPI--PDHDFFYFTQDNSKMGEQAFTRAYINFVSYEDILI 58
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFIS- 126
F E F+G++FV++KG +F +VE+AP Q+VPK+ ++K D + T+ DP++L+FL+ +
Sbjct: 59 FQEKFDGYIFVDQKGNEFPAVVEFAPFQKVPKKKTRKPDVKMATIENDPDFLKFLDGLDQ 118
Query: 127 KPVENLPSAEIQLERREA 144
K E+ P+ + LE EA
Sbjct: 119 KSSESAPAVDTILEEIEA 136
>gi|302682602|ref|XP_003030982.1| hypothetical protein SCHCODRAFT_109867 [Schizophyllum commune H4-8]
gi|300104674|gb|EFI96079.1| hypothetical protein SCHCODRAFT_109867, partial [Schizophyllum
commune H4-8]
Length = 502
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 8/161 (4%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKT---SQKHQSCARAYLDFKKPE 64
K+VVR LPP + + F E + +W ++ GK K +RAY+ FK E
Sbjct: 102 KIVVRRLPPNLPESIFWESVQAWVSEETVSWRTYWPGKMRSRPDKENVPSRAYIVFKTDE 161
Query: 65 DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEF 124
V F + ++GH+F ++ G +F+ +VE+AP Q+VP + K D R GT+ KD +Y+ FLE
Sbjct: 162 QVAIFGKEYDGHLFRDKAGNEFQAVVEFAPYQKVPSEKKKVDVRAGTIEKDEDYISFLES 221
Query: 125 ISKPVENLPSAEIQLERREAERAGAAKEALI-VTPLMDFVR 164
++ P + P + +E A A + TPL+++++
Sbjct: 222 LNAPTSSEP---VTMESLRAHIAATRPPSPPKTTPLLEYLK 259
>gi|12860428|dbj|BAB31954.1| unnamed protein product [Mus musculus]
gi|74189593|dbj|BAE36799.1| unnamed protein product [Mus musculus]
Length = 232
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNKQ 208
>gi|351698236|gb|EHB01155.1| Regulator of nonsense transcripts 3A [Heterocephalus glaber]
Length = 428
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ Y V+ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVA--GADRSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQR-VPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG+++ +VE+AP Q+ V ++ K+D + G + DPEY +FLE S
Sbjct: 124 LFRDRFDGYVFMSSKGLEYPAVVEFAPFQKIVRRKLKKRDSKTGGIEDDPEYKQFLETYS 183
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA ++ E E A TPL+D+++ ++ K
Sbjct: 184 MEEERT-SANPEILLGEIEAKTRELVARRTTPLLDYIKNRKLEK 226
>gi|357618013|gb|EHJ71109.1| Upf3 regulator of nonsense transcripts-like protein B [Danaus
plexippus]
Length = 509
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 6/135 (4%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKP 63
PL TK+++R LPP +T+ AF EQ+ ++ F + S + +RAY++F
Sbjct: 33 PL--TKIILRRLPPTMTEEAFLEQVSPI--PEHDHFYFAKPDNSLGNNVYSRAYINFVNV 88
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
+D+ F + F+G+VF++EKGV++ IVEYAP QR+PK+ KKD + GT+ DP Y EF+E
Sbjct: 89 DDIYLFRDKFDGYVFLDEKGVEYVGIVEYAPFQRIPKKKKKKDPKCGTIESDPIYQEFVE 148
Query: 124 FISKPVE--NLPSAE 136
+SK E N P E
Sbjct: 149 NLSKEQETDNQPKLE 163
>gi|307165852|gb|EFN60215.1| Regulator of nonsense transcripts 3B [Camponotus floridanus]
Length = 601
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 5/165 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +TQ F EQ+ ++ + F + S + +RAY++F +D+
Sbjct: 47 TKVVIRRLPPTMTQDQFLEQVSPL--PEHDHLYFVKADMSLGQFAFSRAYINFIDQQDIF 104
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW--SKKDGREGTLLKDPEYLEFLEFI 125
F E F+ +VF++ KGV++ +VE+AP QR+PK+ KKD + GT+ D ++ FLE +
Sbjct: 105 MFREKFDNYVFIDSKGVEYPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDLYFINFLEGL 164
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + E AK+ + TPL+++++ ++ K
Sbjct: 165 KNQEVDSSVTQSKTEYSYQPPDNTAKK-ITTTPLLEYLKLRKQEK 208
>gi|158296237|ref|XP_316679.4| AGAP006649-PA [Anopheles gambiae str. PEST]
gi|157016415|gb|EAA10775.4| AGAP006649-PA [Anopheles gambiae str. PEST]
Length = 661
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 3 GPLDRTKVVVRNLPPAITQPAFTEQI--DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF 60
P T+VV+R LPP +T+ F EQI DG + T ++ SC RAY++F
Sbjct: 64 APAPMTRVVIRRLPPTMTEALFCEQIAVDGKLPANDEFYFVGPDWTLGQNASC-RAYINF 122
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYL 119
P D+ F + ++G+ FV+ KG++++ +VEYAP Q + + KKD + GT+ D ++
Sbjct: 123 TNPADIFRFTDSYDGYTFVDSKGMEYQAVVEYAPFQGPLKARARKKDPKCGTIESDTHFI 182
Query: 120 EFLEFISKPVENL----PSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
F E + K E + E + + E+ TPL++++ Q++ K
Sbjct: 183 AFKEALEKEQEEALHGRGTQEFSFKIEQEEK-------TTTTPLLEYIAQRKQEK 230
>gi|41055672|ref|NP_957248.1| regulator of nonsense transcripts 3B [Danio rerio]
gi|33416419|gb|AAH55632.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Danio
rerio]
gi|240248227|emb|CAX18773.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Danio
rerio]
Length = 467
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP +T+ EQ+ +++ F TS ARAYL+FK +D++
Sbjct: 37 TKIVIRRLPPTLTKEDLEEQLQPL--PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q K+ KKD + GT+ D +Y +FLEF +
Sbjct: 95 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKVAKKRSKKKDAKSGTIDDDADYKKFLEFYN 154
Query: 127 KPVENLPS-AEIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E PS EI LE EA+ + + TPL+DF++ K
Sbjct: 155 GDEEKSPSNPEILLEEIEAKTKELS--SKKTTPLLDFLKNK 193
>gi|432877265|ref|XP_004073128.1| PREDICTED: regulator of nonsense transcripts 3B-like [Oryzias
latipes]
Length = 457
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 92/162 (56%), Gaps = 6/162 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP +T+ EQ+ +++ F TS ARAY++F+ EDV+
Sbjct: 36 TKIVIRRLPPTLTKEELEEQLQPL--PEVDYLEFFSNDTSLYPHLFARAYINFRNEEDVV 93
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG +F IVE+AP Q+ K+ KK + GT+ +DP+Y FLE+ +
Sbjct: 94 LFRDRFDGYVFVDGKGQEFPAIVEFAPFQKTAKKRIKKKDSKCGTIAEDPDYKRFLEYYN 153
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
L + E LE EA + A TPL+DF++ K+
Sbjct: 154 GDDNKLTTTPETLLEEVEARSKELS--AKKTTPLLDFLKTKQ 193
>gi|327289668|ref|XP_003229546.1| PREDICTED: regulator of nonsense transcripts 3B-like [Anolis
carolinensis]
Length = 468
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F TS +RAY++FK ED++
Sbjct: 44 SKVVIRRLPPSLTKEQLEEHLQPL--PEHDYFEFFANDTSLYPHMFSRAYINFKNQEDIV 101
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG+++ IVE+AP Q K+ KKD + GT+ DPEY +FLE S
Sbjct: 102 LFRDRFDGYVFVDHKGLEYPAIVEFAPFQKAAKKKSKKKDAKAGTIDDDPEYKKFLESYS 161
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA+ A TPL++F++ K
Sbjct: 162 ADDEKLTSTPETLLEEIEAKNKELI--AKKTTPLLNFLKNK 200
>gi|351709915|gb|EHB12834.1| Regulator of nonsense transcripts 3B [Heterocephalus glaber]
Length = 490
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTREQLQEHLQPM--AEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|431913181|gb|ELK14863.1| Regulator of nonsense transcripts 3A [Pteropus alecto]
Length = 485
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 94/170 (55%), Gaps = 16/170 (9%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPSLTKEQLEEQLHPLPA--HDYFEFFTADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPK-QWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K + KKD + G++ D EY FLE S
Sbjct: 126 LFRDRFDGYIFIDNKGLEYPAVVEFAPFQKIAKRRLKKKDAKTGSIEGDLEYKRFLEAYS 185
Query: 127 KPVENLPS------AEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E + +I+ + RE A TPL+++++ ++ K
Sbjct: 186 VEEEKTSTNPETLLGDIEAKTRE-------HFARRTTPLLEYIKNRKLEK 228
>gi|340719970|ref|XP_003398417.1| PREDICTED: hypothetical protein LOC100643701 isoform 1 [Bombus
terrestris]
Length = 626
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 13/161 (8%)
Query: 16 PPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNG 75
PP +TQ F EQ+ ++++ F + S + +RAY++F + +D+ F E F+
Sbjct: 54 PPXMTQEQFLEQVSPL--PEHDYLYFVKADMSLGQYAFSRAYINFVEQQDIFMFREKFDN 111
Query: 76 HVFVNEKGVQFKTIVEYAPSQRVPKQW--SKKDGREGTLLKDPEYLEFLEFISKPVENLP 133
+VFV+ KG ++ +VE+AP QR+PK+ KKD + GT+ DP Y+ FLE +
Sbjct: 112 YVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCGTIESDPYYISFLESLKN-----Q 166
Query: 134 SAEIQLERREAERA----GAAKEALIVTPLMDFVRQKRAAK 170
AE + + + E + + + TPL+++V+Q++ K
Sbjct: 167 EAESNISQPKTEYSYQPPDNTPKKVTTTPLLEYVKQRKQEK 207
>gi|354475717|ref|XP_003500074.1| PREDICTED: regulator of nonsense transcripts 3B-like [Cricetulus
griseus]
Length = 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 91/162 (56%), Gaps = 8/162 (4%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 3 RVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFANDTSLYPHMFARAYINFKNQEDILL 60
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFISK 127
F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+ DPEY +FLE +
Sbjct: 61 FRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKRIKKRDTKVGTIDDDPEYRKFLETYAT 120
Query: 128 PVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK TPL+ F++ K+
Sbjct: 121 DNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNKQ 159
>gi|291407875|ref|XP_002720172.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B isoform
2 [Oryctolagus cuniculus]
Length = 470
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|356522136|ref|XP_003529705.1| PREDICTED: regulator of nonsense transcripts 3A-like [Glycine max]
Length = 72
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 48/61 (78%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
+RAY+DFK P+DV EF EFF+GHVFVNE+G Q+K IVEYAPSQRVPK +KK +G
Sbjct: 3 SRAYIDFKCPDDVFEFTEFFDGHVFVNERGAQYKVIVEYAPSQRVPKPSAKKMDVKGLYS 62
Query: 114 K 114
K
Sbjct: 63 K 63
>gi|291407873|ref|XP_002720171.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B isoform
1 [Oryctolagus cuniculus]
Length = 483
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|355705111|gb|EHH31036.1| Nonsense mRNA reducing factor 3B [Macaca mulatta]
gi|355757661|gb|EHH61186.1| Nonsense mRNA reducing factor 3B [Macaca fascicularis]
Length = 483
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDCFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|344286156|ref|XP_003414825.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 2
[Loxodonta africana]
Length = 470
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVVVR LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVVRRLPPTLTKEQLLEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|391865862|gb|EIT75141.1| hypothetical protein Ao3042_08989 [Aspergillus oryzae 3.042]
Length = 575
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++VR LPP +TQ F + + G+ +W ++ GK S+ K +RAY+
Sbjct: 44 RLKLLVRRLPPGLTQAEFEAAVGPEWKLGAGKIDWFQYKPGKVSKDPAKPSRPSRAYVHV 103
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
+ ++ + F + N+ + VEYAP +VP +KD R+GT+ +
Sbjct: 104 VSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQ 163
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DP+++ FLE +++P+ P+ E + E KE + TPL+ ++++K+A KA
Sbjct: 164 DPDFIAFLESLTQPITKPPTVENATDAEE------KKETVTTTPLVQYIKEKKANKA 214
>gi|344286154|ref|XP_003414824.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 1
[Loxodonta africana]
Length = 483
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVVVR LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVVRRLPPTLTKEQLLEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|301774362|ref|XP_002922607.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 2
[Ailuropoda melanoleuca]
Length = 470
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|193787549|dbj|BAG52755.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|18375528|ref|NP_542199.1| regulator of nonsense transcripts 3B isoform 1 [Homo sapiens]
gi|397469625|ref|XP_003806446.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Pan
paniscus]
gi|426397256|ref|XP_004064839.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Gorilla
gorilla gorilla]
gi|60390643|sp|Q9BZI7.1|REN3B_HUMAN RecName: Full=Regulator of nonsense transcripts 3B; AltName:
Full=Nonsense mRNA reducing factor 3B; AltName:
Full=Up-frameshift suppressor 3 homolog B; Short=hUpf3B;
AltName: Full=Up-frameshift suppressor 3 homolog on
chromosome X; Short=hUpf3p-X
gi|12620408|gb|AAG60691.1|AF318576_1 UPF3X [Homo sapiens]
gi|119610248|gb|EAW89842.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Homo sapiens]
gi|119610250|gb|EAW89844.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Homo sapiens]
Length = 483
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|111307687|gb|AAI21018.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Homo
sapiens]
Length = 470
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|301774360|ref|XP_002922606.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 1
[Ailuropoda melanoleuca]
gi|281340900|gb|EFB16484.1| hypothetical protein PANDA_011582 [Ailuropoda melanoleuca]
Length = 483
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|238490958|ref|XP_002376716.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
flavus NRRL3357]
gi|220697129|gb|EED53470.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
flavus NRRL3357]
Length = 575
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++VR LPP +TQ F + + G+ +W ++ GK S+ K +RAY+
Sbjct: 44 RLKLLVRRLPPGLTQAEFEAAVGPEWKLGAGKIDWFQYKPGKVSKDPAKPSRPSRAYVHV 103
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
+ ++ + F + N+ + VEYAP +VP +KD R+GT+ +
Sbjct: 104 VSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQ 163
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DP+++ FLE +++P+ P+ E A A KE + TPL+ ++++K+A KA
Sbjct: 164 DPDFIAFLESLTQPITKPPTVE------NATDAEEKKETVTTTPLVQYIKEKKANKA 214
>gi|388490053|ref|NP_001253666.1| regulator of nonsense transcripts 3B [Macaca mulatta]
gi|387539430|gb|AFJ70342.1| regulator of nonsense transcripts 3B isoform 2 [Macaca mulatta]
Length = 470
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|441674950|ref|XP_004092554.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Nomascus leucogenys]
Length = 483
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|12711674|ref|NP_075386.1| regulator of nonsense transcripts 3B isoform 2 [Homo sapiens]
gi|397469623|ref|XP_003806445.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Pan
paniscus]
gi|426397254|ref|XP_004064838.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Gorilla
gorilla gorilla]
gi|12232324|gb|AAG48511.1| hUPF3B [Homo sapiens]
gi|119610251|gb|EAW89845.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_c [Homo sapiens]
gi|119610252|gb|EAW89846.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_c [Homo sapiens]
Length = 470
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|402911265|ref|XP_003918257.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Papio
anubis]
Length = 483
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|402911263|ref|XP_003918256.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Papio
anubis]
Length = 470
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|317145669|ref|XP_001820983.2| nonsense-mediated mRNA decay protein Upf3 [Aspergillus oryzae
RIB40]
Length = 575
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++VR LPP +TQ F + + G+ +W ++ GK S+ K +RAY+
Sbjct: 44 RLKLLVRRLPPGLTQAEFEVAVGPEWKLGAGKIDWFQYKPGKVSKDPAKPSRPSRAYVHV 103
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
+ ++ + F + N+ + VEYAP +VP +KD R+GT+ +
Sbjct: 104 VSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQ 163
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DP+++ FLE +++P+ P+ E + E KE + TPL+ ++++K+A KA
Sbjct: 164 DPDFIAFLESLTQPITKPPTVENATDAEE------KKETVTTTPLVQYIKEKKANKA 214
>gi|74008230|ref|XP_851843.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Canis
lupus familiaris]
Length = 481
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|338729627|ref|XP_001915031.2| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B-like [Equus caballus]
Length = 534
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 103 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 160
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 161 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 220
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 221 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 260
>gi|195489365|ref|XP_002092707.1| GE11515 [Drosophila yakuba]
gi|194178808|gb|EDW92419.1| GE11515 [Drosophila yakuba]
Length = 492
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 39/179 (21%)
Query: 8 TKVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF- 60
K+V+R+LPP +T+ F +Q+ D + + +W S H++ RAY+D
Sbjct: 30 VKIVMRHLPPTMTEADFLDQVGPLPENDSYYYCKADW--------SLGHEATCRAYIDMS 81
Query: 61 -KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEY 118
K +VL+F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ +P Y
Sbjct: 82 SKDITEVLQFRDRFDGYVFVDNKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHY 141
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFVRQKR 167
EF++ +++ ER EA R G K E + TPL+ ++ K+
Sbjct: 142 QEFIKRLAE------------EREEASRMGDVKIDFNFDRRTDEKVKSTPLLQYLANKK 188
>gi|395848846|ref|XP_003797053.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Otolemur
garnettii]
Length = 470
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++F+ ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFRNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|395848848|ref|XP_003797054.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Otolemur
garnettii]
Length = 483
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++F+ ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFRNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|417401726|gb|JAA47733.1| Putative nonsense-mediated decay protein upf3 [Desmodus rotundus]
Length = 482
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|417401480|gb|JAA47625.1| Putative nonsense-mediated decay protein upf3 [Desmodus rotundus]
Length = 469
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|451845066|gb|EMD58380.1| hypothetical protein COCSADRAFT_62417, partial [Cochliobolus
sativus ND90Pr]
Length = 603
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCAR 55
K P R K++ R LPP +T+ F + D G GR +W+S+R+GK S K AR
Sbjct: 27 KPPQPRLKLICRRLPPGLTKQEFVNVLGDDWKLGAGRIDWLSYRKGKISTDAAKPSKPAR 86
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNE-KGVQFKTIV-----EYAPSQRVPKQWSKKDGRE 109
AYL KP+ V ++ F + K Q +V EYAP ++P + D R+
Sbjct: 87 AYLHVTKPDHVKALGDYIRALSFHDAAKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQ 146
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
GT+ +D E+ +FLE ++ P+ P+ E + A K+ + TPL++ +R+K+A
Sbjct: 147 GTIDQDQEFKDFLESLTNPITKPPAPESE----------APKDKVKTTPLIEALREKKA 195
>gi|403279153|ref|XP_003931129.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 483
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|74008224|ref|XP_864470.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Canis
lupus familiaris]
Length = 468
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|403279151|ref|XP_003931128.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|410989269|ref|XP_004000885.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Felis
catus]
Length = 485
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|410989267|ref|XP_004000884.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Felis
catus]
Length = 472
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|198421280|ref|XP_002130416.1| PREDICTED: similar to UPF3 regulator of nonsense transcripts
homolog B [Ciona intestinalis]
Length = 434
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 12/168 (7%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPE 64
L +TKVV+R LPP +T+ F E I G +++ F G + + RAY++F +
Sbjct: 24 LIQTKVVMRRLPPGLTEEQFKELI-GTLPP-HDYFRFVSGDRTLVPNNFCRAYINFINTD 81
Query: 65 DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLE 123
D+ +F + F+GH F + G + +VE+AP Q++P++ KK D + T+ +DP+Y +FLE
Sbjct: 82 DIFKFRDRFDGHEFEFKNGTKHPCVVEFAPFQKIPRKNRKKEDLKVDTIEQDPDYQKFLE 141
Query: 124 FIS----KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
+ K + ++ +LE RE + ++ TPL F++QKR
Sbjct: 142 TLDEEEEKEILDVEKYLDELELREKKN-----HKMVETPLTAFIKQKR 184
>gi|431921495|gb|ELK18861.1| Regulator of nonsense transcripts 3B [Pteropus alecto]
Length = 479
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|444515324|gb|ELV10830.1| Regulator of nonsense transcripts 3B [Tupaia chinensis]
Length = 606
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHVYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|440913116|gb|ELR62611.1| Regulator of nonsense transcripts 3B [Bos grunniens mutus]
Length = 483
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|311276861|ref|XP_003135389.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Sus
scrofa]
Length = 483
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|426257649|ref|XP_004022437.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Ovis
aries]
Length = 483
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 208
>gi|311276863|ref|XP_003135388.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Sus
scrofa]
Length = 470
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|426257651|ref|XP_004022438.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Ovis
aries]
Length = 470
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|168015195|ref|XP_001760136.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688516|gb|EDQ74892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 259
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 65/97 (67%), Gaps = 6/97 (6%)
Query: 104 KKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAER-----AGAAKEALIVTP 158
+KD EG + KDP+YL F++ ++KP E LP EIQLERREAE+ AG +K+ ++VTP
Sbjct: 6 EKDVGEGIIYKDPDYLAFMQQLAKPAEYLPRVEIQLERREAEKAASIVAGTSKDVVVVTP 65
Query: 159 LMDFVRQKRAAK-AGPRRLLSNGKLSRRASGSSTGSP 194
L D VR RAAK R + SN +LS R++ S+ +P
Sbjct: 66 LTDLVRSLRAAKFTSQRSMSSNSELSARSAESANHAP 102
>gi|432111537|gb|ELK34655.1| Regulator of nonsense transcripts 3B [Myotis davidii]
Length = 483
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
E + S E LE EA+ R AK+ TPL+ F++ K
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNK 207
>gi|348528186|ref|XP_003451599.1| PREDICTED: regulator of nonsense transcripts 3A-like [Oreochromis
niloticus]
Length = 464
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +++ EQ+ Y++ F S +RAY++FK PED+L
Sbjct: 46 TKVVIRRLPPNLSKEQLEEQLSPL--PSYDYFEFFPADQSLYPHLFSRAYINFKNPEDIL 103
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q++ K+ KK + G++ +DPEY FLE S
Sbjct: 104 LFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYS 163
Query: 127 KPVE-NLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
E ++ + E L E KE + TPL+++++ K+ K
Sbjct: 164 CDEEKSMANPETLL----GEIEAKTKELIAKRTTPLLEYIKNKKIEK 206
>gi|301781170|ref|XP_002926002.1| PREDICTED: regulator of nonsense transcripts 3A-like [Ailuropoda
melanoleuca]
Length = 495
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ EQ+ +++ F +S +RAY++F+ P+D+L
Sbjct: 79 SKVVIRRLPPSLTKEQLEEQLRPLPA--HDYFEFFTADSSLYPHLYSRAYINFRNPDDIL 136
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q K+ +KD + G++ DPEY +FLE
Sbjct: 137 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKRKDAQTGSIEDDPEYKKFLETYC 196
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E P+A + + E A TPL++++R ++ K
Sbjct: 197 V-EEEKPNANPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEK 239
>gi|295665137|ref|XP_002793120.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278641|gb|EEH34207.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 592
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 22/199 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
KG R K+++R LPP +T F + + G+ +W+ FR GK S+ K R
Sbjct: 32 KGATPRLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRAKPSKPTR 91
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGRE 109
YL V E +E F + + ++ EYAP RVP +KDGR+
Sbjct: 92 VYLRVTSTPLVEELSEKVRQSSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRKDGRQ 151
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ D +++ FLE ++ PV + +I E A +E +TPL+ F+R+K+A
Sbjct: 152 GTIDLDSDFIAFLESLTNPVTKT-TMDISAE-------DAKEEKSTITPLIQFLREKKAN 203
Query: 170 KAGPRRLLSNGKLSRRASG 188
K R +S K SR A G
Sbjct: 204 KG--REAVSPAKPSRHARG 220
>gi|334350192|ref|XP_001372586.2| PREDICTED: regulator of nonsense transcripts 3B-like [Monodelphis
domestica]
Length = 564
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KV++R LPP +T+ E + +++ F +S +RAY++FK ED++
Sbjct: 139 SKVIIRRLPPTLTKEQLEEHLQPL--PEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIV 196
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE
Sbjct: 197 LFRDRFDGYVFVDHKGQEYPAIVEFAPFQKSAKKKNKKKDAKTGTIEDDPEYKKFLESYC 256
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA A TPL++F++ K
Sbjct: 257 AEEEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 295
>gi|115497252|ref|NP_001069879.1| regulator of nonsense transcripts 3B [Bos taurus]
gi|83405772|gb|AAI11354.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Bos
taurus]
gi|296471325|tpg|DAA13440.1| TPA: UPF3 regulator of nonsense transcripts homolog B [Bos taurus]
Length = 307
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 ADNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQ 208
>gi|345326166|ref|XP_001509880.2| PREDICTED: regulator of nonsense transcripts 3B-like
[Ornithorhynchus anatinus]
Length = 530
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVV+R LPP++T+ E + +++ F +S +RAY++FK ED++
Sbjct: 102 KVVIRRLPPSLTKEQLEEHLQPL--PEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVL 159
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISK 127
F + F+G+VF++ KG ++ IVE+AP Q+ K+ SKK + GT+ +DPEY +FLE S
Sbjct: 160 FRDRFDGYVFIDHKGQEYPAIVEFAPFQKSAKKKSKKKDAKTGTIDEDPEYKKFLESYSA 219
Query: 128 PVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA A TPL++F++ K
Sbjct: 220 DDEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 257
>gi|449483599|ref|XP_002192806.2| PREDICTED: regulator of nonsense transcripts 3A [Taeniopygia
guttata]
Length = 559
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 136 SKVVIRRLPPCLTKEQLEEQLHPLPA--HDYFEFCTADPSLYPHLYSRAYINFRNPEDIL 193
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 194 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYC 253
Query: 126 SKPVENLPSAEIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + EI L EA+ R A+ TPL+++++ ++ K
Sbjct: 254 ADEDKICANPEILLGEIEAKTRELIARR---TTPLLEYIKNRKLEK 296
>gi|118084366|ref|XP_416933.2| PREDICTED: regulator of nonsense transcripts 3A [Gallus gallus]
Length = 538
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 16/170 (9%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 115 SKVVIRRLPPCLTKEQLEEQLHPLPA--HDYFEFCTADPSLYPHLYSRAYINFRNPEDIL 172
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 173 LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYC 232
Query: 127 KPVENLPS------AEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E + + EI+ + RE A TPL+++++ ++ K
Sbjct: 233 ADEEKICANPETLLGEIEAKTREL-------IARRTTPLLEYIKNRKLEK 275
>gi|451992492|gb|EMD84975.1| hypothetical protein COCHEDRAFT_1064154, partial [Cochliobolus
heterostrophus C5]
Length = 617
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCAR 55
K P R K++ R LPP + + F + + D G GR +W+S+R+GK S K AR
Sbjct: 27 KPPQPRLKLICRRLPPGLAKHEFAQVLGDDWKLGAGRIDWLSYRKGKISTDAAKPSKPAR 86
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNE-KGVQFKTIV-----EYAPSQRVPKQWSKKDGRE 109
AYL KPE V + F + K Q +V EYAP ++P + D R+
Sbjct: 87 AYLHVTKPEHVKALGDHVRTLSFHDAAKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQ 146
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ +D E+ +FLE ++ P+ P+ E + A K+ + TPL++ +R+K+A
Sbjct: 147 GTIDQDQEFKDFLESLTNPITKPPAPESE----------APKDKVKTTPLIEALREKKAN 196
Query: 170 KAGPRRLLSNGKLSRRA 186
+ P N K +R+A
Sbjct: 197 RDKP-----NAKPNRQA 208
>gi|221507633|gb|EEE33237.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 588
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARA---YLDFKKP 63
+TKVVVR LPP+ + E + G+ +W F G+ QK +R Y++F
Sbjct: 284 KTKVVVRLLPPSAREEDLLELVAAPLQGKMSWTRFVPGR-QQKSDVPSRNSTWYVNFSTE 342
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
ED +F + F+G VFV+E+ FK + AP Q+VP++ + D REG+L KDP Y+ FL+
Sbjct: 343 EDADDFIKSFHGKVFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGSLAKDPLYVNFLQ 401
Query: 124 FI 125
+
Sbjct: 402 AL 403
>gi|237830905|ref|XP_002364750.1| smg-4/UPF3 family domain protein [Toxoplasma gondii ME49]
gi|211962414|gb|EEA97609.1| smg-4/UPF3 family domain protein [Toxoplasma gondii ME49]
Length = 595
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARA---YLDFKKP 63
+TKVVVR LPP+ + E + G+ +W F G+ QK +R Y++F
Sbjct: 284 KTKVVVRLLPPSAREEDLLELVAAPLQGKMSWTRFVPGR-QQKSDVPSRNSTWYVNFSTE 342
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
ED +F + F+G VFV+E+ FK + AP Q+VP++ + D REG+L KDP Y+ FL+
Sbjct: 343 EDADDFIKSFHGKVFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGSLAKDPLYVNFLQ 401
Query: 124 FI 125
+
Sbjct: 402 AL 403
>gi|449498917|ref|XP_002191655.2| PREDICTED: regulator of nonsense transcripts 3B [Taeniopygia
guttata]
Length = 446
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 90/160 (56%), Gaps = 6/160 (3%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP++T+ E + +++ F +S +RAY++FK ED++
Sbjct: 24 QVVIRRLPPSLTKEQLEEHLQPL--PEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVL 81
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISK 127
F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK + GT+ DPEY +FLE S
Sbjct: 82 FRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSA 141
Query: 128 PVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA A TPL++F++ K
Sbjct: 142 DDEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 179
>gi|395545866|ref|XP_003774818.1| PREDICTED: regulator of nonsense transcripts 3B, partial
[Sarcophilus harrisii]
Length = 426
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KV++R LPP +T+ E + +++ F +S +RAY++FK ED++
Sbjct: 3 SKVIIRRLPPTLTKEQLEEHLQPL--PEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIV 60
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG ++ IVE+AP Q K+ KKD + GT+ DPEY +FLE
Sbjct: 61 LFRDRFDGYVFVDHKGQEYPAIVEFAPFQKSAKKKNKKKDAKSGTIEDDPEYKKFLESYC 120
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA A TPL++F++ K
Sbjct: 121 AEEEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 159
>gi|363732885|ref|XP_003641170.1| PREDICTED: regulator of nonsense transcripts 3B-like [Gallus
gallus]
Length = 478
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++F+ ED++
Sbjct: 55 SKVVIRRLPPSLTREQLEEHLQPL--PEHDYFEFFANDSSLYPHVFSRAYINFRNQEDIV 112
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK + GT+ DPEY +FLE S
Sbjct: 113 LFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYS 172
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA A TPL++F++ K
Sbjct: 173 ADDEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 211
>gi|296236280|ref|XP_002807957.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Callithrix jacchus]
Length = 478
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 50 QVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIIL 107
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISK 127
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 108 FRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKRKTKKRDTKVGTIDDDPEYRKFLESYAM 167
Query: 128 PVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 168 DNEKMTSTPETLLEEIEAKNRELIAKK---TTPLLSFLKNKQ 206
>gi|53136728|emb|CAG32693.1| hypothetical protein RCJMB04_32p8 [Gallus gallus]
Length = 478
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++F+ ED++
Sbjct: 55 SKVVIRRLPPSLTREQLEEHLQPL--PEHDYFEFFANDSSLYPHVFSRAYINFRNQEDIV 112
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK + GT+ DPEY +FLE S
Sbjct: 113 LFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYS 172
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA A TPL++F++ K
Sbjct: 173 ADDEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 211
>gi|358370682|dbj|GAA87292.1| nonsense-mediated mRNA decay protein Upf3 [Aspergillus kawachii IFO
4308]
Length = 584
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 18/174 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++VR LPP +TQ F + + GG+ +W ++ GK S+ K +RAY+
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWRVGGGKVDWFQYKPGKVSKDPAKPSRPSRAYIHV 98
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLK 114
+ + + F++ + ++ E+AP ++ S+KD R+GT+ +
Sbjct: 99 MSSDHTIPLSNKVRQTSFIDARNTSNDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTIDQ 158
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
DPE++ FLE +++P+ P + + + KE + VTPL+ ++R+K+A
Sbjct: 159 DPEFIAFLESLTQPLAKPPPVDSGADGED------KKETVTVTPLVQYIREKKA 206
>gi|194885777|ref|XP_001976490.1| GG19981 [Drosophila erecta]
gi|190659677|gb|EDV56890.1| GG19981 [Drosophila erecta]
Length = 489
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 39/174 (22%)
Query: 9 KVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF-- 60
K+V+R+LPP +T+ F EQ+ D + + +W S H++ RAY+D
Sbjct: 31 KIVMRHLPPTMTEAEFLEQVGPLPENDSYYYCKADW--------SLGHEATCRAYIDMSS 82
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYL 119
K +VL+F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ +P Y
Sbjct: 83 KDITEVLQFRDRFDGYVFVDNKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIEIEPHYQ 142
Query: 120 EFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFV 163
EF++ ++ ER EA R G K E + TPL+ ++
Sbjct: 143 EFIKRQAE------------EREEASRMGDVKIEFNIDRRTDEKVKSTPLLQYL 184
>gi|302907552|ref|XP_003049671.1| hypothetical protein NECHADRAFT_89796 [Nectria haematococca mpVI
77-13-4]
gi|256730607|gb|EEU43958.1| hypothetical protein NECHADRAFT_89796 [Nectria haematococca mpVI
77-13-4]
Length = 641
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 18/176 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTS---QKHQSCARAYLDFKK 62
K+V+R LPP +TQ F + A+ GR +W SF GK S K RAY+ +
Sbjct: 52 KLVIRRLPPGMTQDEFVTILGNAWELGKGRVDWFSFAPGKISTDPSKPSRPGRAYVHVMR 111
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTI-------VEYAPSQRVPKQWSKKDGREGTLLKD 115
+D++ + V+ + K F VE+A ++VP + D R+GT+ +D
Sbjct: 112 KDDIMALNDTVRTAVWEDAKAT-FTNPSLIGPPSVEFAIYKKVPGNKKRTDARQGTIDQD 170
Query: 116 PEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
PE++ FLE ++ P P E E E + G A+ + TPL++++++K+A KA
Sbjct: 171 PEFMAFLEDLANPA---PPKE-NAEGEEGDDIGKAETKVTTTPLIEYLKEKKANKA 222
>gi|115397199|ref|XP_001214191.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192382|gb|EAU34082.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 546
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++VR LPP +TQ F I + G+ +W ++ GK S+ K +RAY+
Sbjct: 40 RLKLLVRRLPPGLTQNEFESAIGDEWKVGAGKVDWFQYKPGKVSKDPAKPSRPSRAYIHV 99
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLK 114
E ++ + FV+ + ++ E+AP ++P +KD R+GT+ +
Sbjct: 100 VSSEYIVPLSNKVRQTSFVDARNTSNDPVLLGPAALEFAPYAKIPGSRVRKDARQGTIDQ 159
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DP+++ FLE +++P+ E E + KE + TPL+ ++++K+A KA
Sbjct: 160 DPDFIAFLESLTQPIAKPAPVEATGEPED------KKETITTTPLVQYIKEKKANKA 210
>gi|328773377|gb|EGF83414.1| hypothetical protein BATDEDRAFT_84963 [Batrachochytrium
dendrobatidis JAM81]
Length = 510
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQK---HQSCARAYLDF 60
P RTK+VVR LPP + + AF I + +W + GK ++K +RAYL+F
Sbjct: 56 PKLRTKIVVRRLPPTLPRDAFFNTI-SKWLDYIDWSEYVSGKLAKKLAKQNVFSRAYLNF 114
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
+ VL+F + NGH+FV+ KG + + +VE+AP QR KQ D TL D +Y
Sbjct: 115 IDCDSVLDFFKSCNGHLFVDSKGNEHRAVVEFAPFQRFCKQRKTIDPLVNTLDADADYQA 174
Query: 121 FLE 123
FL+
Sbjct: 175 FLQ 177
>gi|242803385|ref|XP_002484163.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|242803390|ref|XP_002484164.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717508|gb|EED16929.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717509|gb|EED16930.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 579
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCAR 55
K P R K+++R LPP +TQ F + D G G+ +W F+ GK S+ K AR
Sbjct: 31 KVPAPRLKLIIRRLPPGLTQAEFETGLGDDWKVGRGKIDWFQFKSGKISKDPAKPSRPAR 90
Query: 56 AYLDFKKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
AY+ E + +E F + N+ + VE+AP RVP S+KDGR+
Sbjct: 91 AYVHVLSEEIIASLSEKVRATSFHDARNTSNDPVLLGPPSVEFAPYARVPGSRSRKDGRQ 150
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ +DPE++ FLE ++ P+ + E E +E + +TPL+ ++++K+A+
Sbjct: 151 GTIDQDPEFVAFLESLTNPI-------TKPGPVEGETEKKEEEEITITPLVQYIKEKKAS 203
Query: 170 KAGPRRLLSNGKLSRRAS 187
KA + ++GK S+R +
Sbjct: 204 KA---KDSASGKSSKRGA 218
>gi|395855174|ref|XP_003800045.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3A [Otolemur garnettii]
Length = 556
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +TQ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 67 SKVVIRRLPPGLTQEQLQEQLRPLPA--HDYFEFFSADLSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKPKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + + + E L EA+ +E + TPL+++++ ++ K
Sbjct: 185 VEEEKAIANPETLLGEIEAK----TRELIARRTTPLLEYIKNRKLEK 227
>gi|119610249|gb|EAW89843.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_b [Homo sapiens]
Length = 292
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQ 208
>gi|111309183|gb|AAI21019.1| UPF3B protein [Homo sapiens]
Length = 218
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 8/170 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAKAGPR 174
E + S E LE EA+ R AK+ TPL+ F++ K+ + R
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQRMREEKR 215
>gi|380793431|gb|AFE68591.1| regulator of nonsense transcripts 3B isoform 1, partial [Macaca
mulatta]
Length = 228
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYA 168
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 169 TDNEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQ 208
>gi|119472065|ref|XP_001258263.1| nonsense-mediated mRNA decay protein Upf3, putative [Neosartorya
fischeri NRRL 181]
gi|119406415|gb|EAW16366.1| nonsense-mediated mRNA decay protein Upf3, putative [Neosartorya
fischeri NRRL 181]
Length = 579
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 22/176 (12%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAF-----TEQIDGAFGGRYNWVSFRQGKTSQ---KHQSC 53
K P R K++VR LPP +TQ F +E + GA G+ +W ++ GK S+ K
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENALGSEWMVGA--GKVDWYQYKPGKVSKDYAKPSRP 91
Query: 54 ARAYLDFKKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDG 107
+RAY+ E + ++ F + N+ + +E+AP ++P +KD
Sbjct: 92 SRAYIHVTSSEHIAPLSDKIRQTSFLDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDA 151
Query: 108 REGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
R+GT+ +DPE++ FLE +++P+ + E + E KE + TPL+ ++
Sbjct: 152 RQGTIDQDPEFIAFLESLTQPITKPTTVETPTDAEE------KKETVTTTPLVQYI 201
>gi|410896456|ref|XP_003961715.1| PREDICTED: regulator of nonsense transcripts 3A-like [Takifugu
rubripes]
Length = 458
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +++ E + +++ F S +RAY++FK PED+L
Sbjct: 46 TKVVLRRLPPNLSKDQLEEHLSPL--PPFDYFEFFPADQSLYPHLFSRAYINFKNPEDIL 103
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q++ K+ KK + G++ +DPEY FLE IS
Sbjct: 104 LFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENIS 163
Query: 127 KPVE-NLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E ++ + E L EA+ A TPL+++++ K+ K
Sbjct: 164 CDEEKSMANPETLLGEIEAKTRELI--ARRTTPLLEYIKNKKIEK 206
>gi|226293588|gb|EEH49008.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 591
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K R K+++R LPP +T F + + G+ +W+ FR GK S+ K R
Sbjct: 32 KAATPRLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRAKPSKPTR 91
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGRE 109
YL V E +E F + + ++ EYAP RVP +KDGR+
Sbjct: 92 VYLRVTSTPLVEELSEKVRQLSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRKDGRQ 151
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ D +++ FLE ++ PV + +I E A +E +TPL+ F+R+K+A
Sbjct: 152 GTIDLDSDFIAFLESLTNPVTKT-TVDISAE-------DAKEEKSTITPLIQFLREKKAN 203
Query: 170 KAGPRRLLSNGKLSRRASG 188
K R +S K SR A G
Sbjct: 204 KG--REAVSPAKPSRHARG 220
>gi|281342416|gb|EFB18000.1| hypothetical protein PANDA_015590 [Ailuropoda melanoleuca]
Length = 375
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP++T+ EQ+ +++ F +S +RAY++F+ P+D+L
Sbjct: 10 QVVIRRLPPSLTKEQLEEQLRPLPA--HDYFEFFTADSSLYPHLYSRAYINFRNPDDILL 67
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTLLKDPEYLEFLEFISK 127
F + F+G++F++ KG+++ +VE+AP Q K+ +KD + G++ DPEY +FLE
Sbjct: 68 FRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKRKDAQTGSIEDDPEYKKFLETYCV 127
Query: 128 PVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E P+A + + E A TPL++++R ++ K
Sbjct: 128 -EEEKPNANPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEK 169
>gi|195382487|ref|XP_002049961.1| GJ21877 [Drosophila virilis]
gi|194144758|gb|EDW61154.1| GJ21877 [Drosophila virilis]
Length = 484
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 51/223 (22%)
Query: 9 KVVVRNLPPAITQPAFTEQID------GAFGGRYNWVSFRQGKTSQKHQSCARAYLD--F 60
K+VVR+LPP +T+ F EQ+D + +W S ++ RAY+D
Sbjct: 21 KIVVRHLPPTMTEKEFLEQVDPLPENDSYYYCPADW--------SLGQEATCRAYIDMSL 72
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSK-KDGREGTLLKDPEYL 119
K +VL+F + F+G+VFV+ KG ++ IVEYAP Q K ++ D + T+ K+P +
Sbjct: 73 KDIAEVLQFRDRFDGYVFVDSKGAEYVAIVEYAPFQCFLKNKARSHDNKVNTIEKEPHFQ 132
Query: 120 EFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA---AKAGP-RR 175
EFL+ +++ ER EA R G K +DF + R K+ P +
Sbjct: 133 EFLQKLAE------------EREEATRLGDIK--------IDFTFENRGDEKVKSTPLLQ 172
Query: 176 LLSNGKLSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDT 218
L+N K RR KR +K+K +LR T
Sbjct: 173 YLANKKEKRREEA----------RKRNEEKRKHREEQKLLRST 205
>gi|345788839|ref|XP_849752.2| PREDICTED: regulator of nonsense transcripts 3A [Canis lupus
familiaris]
Length = 475
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 12/168 (7%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 67 SKVVIRRLPPGLTKEQLEEQLHPLPA--HDYFEFFPADLSLYPHLYSRAYINFRNPEDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 127 ----KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
KP N + +E + E A TPL++++R ++ K
Sbjct: 185 VEEEKPNTNPETLLGDIEAKTRELI-----ARRTTPLLEYIRNRKLEK 227
>gi|47220145|emb|CAG07286.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 107/188 (56%), Gaps = 15/188 (7%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP++T+ E + +++ F S +RAY++FK P+D+L
Sbjct: 3 QVVLRRLPPSLTKDQLEEHLSPL--PPFDYFEFFPADQSLYPHLFSRAYINFKNPDDILL 60
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISK 127
F + F+G+VF++ KG ++ +VE+AP Q++ K+ KK + G++ +DPEY FLE IS
Sbjct: 61 FRDRFDGYVFIDSKGQEYAAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENISC 120
Query: 128 PVE-NLPSAEIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRR 185
E +L + EI L EA+ R A+ TPL+++++ K+ K RL + R
Sbjct: 121 DEEKSLANPEILLGEIEAKTRELIARR---TTPLLEYIKNKKIEKQV--RLTAT-----R 170
Query: 186 ASGSSTGS 193
+ GSST +
Sbjct: 171 SRGSSTAA 178
>gi|198456146|ref|XP_001360229.2| GA10824 [Drosophila pseudoobscura pseudoobscura]
gi|198135510|gb|EAL24803.2| GA10824 [Drosophila pseudoobscura pseudoobscura]
Length = 514
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED--- 65
K+V+R+LPP +T+ F +Q+ G + + Q S H + RAY+D P+D
Sbjct: 38 KIVMRHLPPTMTEKEFLDQV-GPLPSESDSYYYCQADWSLGHDATCRAYIDMT-PKDNTE 95
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
+L+F + F+G+VFV++ GV++ +VEYAP Q K S+ D + T+ + Y F++ +
Sbjct: 96 LLQFRDRFDGYVFVDQYGVEYHAMVEYAPFQCFLKNKSRTDDKVNTIEAEAHYQAFIQKL 155
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIV----------TPLMDFVRQKR 167
+ ER EA R G K L TPL+ ++ K+
Sbjct: 156 AD------------EREEASRIGEVKIDLTFDRKSDDRVRSTPLLQYLANKK 195
>gi|258572902|ref|XP_002545213.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905483|gb|EEP79884.1| predicted protein [Uncinocarpus reesii 1704]
Length = 574
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 26/183 (14%)
Query: 7 RTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---------KHQSCA 54
R K++VR LPP +TQ F + + A G G+ +W+S++ GK S K +
Sbjct: 39 RLKLLVRRLPPGLTQAEFDVALGTEWALGKGKVDWLSYKHGKVSTDYHYTTSPSKPSKPS 98
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
RAYL V E ++ G F ++ + +EYAP R P +KD R
Sbjct: 99 RAYLRVTSSAIVGELSDKIRGASFQDARNTASDPSLLGPATLEYAPYPRAPGAKVRKDAR 158
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
GT+ +D E++ FLE ++ PV PS++ L E ER +E + +TPL+ F+++K+A
Sbjct: 159 LGTIDQDSEFIAFLESLTNPVPK-PSSDDLL---EPER----EEKITITPLIQFLKEKKA 210
Query: 169 AKA 171
KA
Sbjct: 211 NKA 213
>gi|320461533|ref|NP_001189377.1| regulator of nonsense transcripts 3A [Danio rerio]
Length = 478
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++++ E + +++ F S +RAY++FK PED++
Sbjct: 43 SKVVIRRLPPSLSKDQLQEHLSPL--PSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 100
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q+V K+ KK + GT+ +DPEY FLE S
Sbjct: 101 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 160
Query: 127 KPVE-NLPSAEIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAK 170
E ++ + E L EA+ R AK TPL+++++ K+ K
Sbjct: 161 CDEEKSMANPETLLGEIEAKTRELIAKR---TTPLLEYIKNKKLEK 203
>gi|195149367|ref|XP_002015629.1| GL10920 [Drosophila persimilis]
gi|194109476|gb|EDW31519.1| GL10920 [Drosophila persimilis]
Length = 514
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED--- 65
K+V+R+LPP +T+ F +Q+ G + + Q S H + RAY+D P+D
Sbjct: 38 KIVMRHLPPTMTEKEFLDQV-GPLPSESDSYYYCQADWSLGHDATCRAYIDMT-PKDNTE 95
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
+L+F + F+G+VFV++ GV++ +VEYAP Q K S+ D + T+ + Y F++ +
Sbjct: 96 LLQFRDRFDGYVFVDQYGVEYHAMVEYAPFQCFLKNKSRTDDKVNTIEAEAHYQAFIQKL 155
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIV----------TPLMDFVRQKR 167
+ ER EA R G K L TPL+ ++ K+
Sbjct: 156 AD------------EREEASRIGEVKIDLTFDRKSDDRVRSTPLLQYLANKK 195
>gi|395754367|ref|XP_003780778.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Pongo abelii]
Length = 357
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 8/161 (4%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
VV+R LPP +T+ E + +++ F TS ARAY++FK ED++ F
Sbjct: 118 VVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILF 175
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKP 128
+ F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 176 RDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATD 235
Query: 129 VENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E + S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 236 NEKMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQ 273
>gi|340719972|ref|XP_003398418.1| PREDICTED: hypothetical protein LOC100643701 isoform 2 [Bombus
terrestris]
gi|340719974|ref|XP_003398419.1| PREDICTED: hypothetical protein LOC100643701 isoform 3 [Bombus
terrestris]
Length = 570
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 19 ITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVF 78
+TQ F EQ+ ++++ F + S + +RAY++F + +D+ F E F+ +VF
Sbjct: 1 MTQEQFLEQVSPL--PEHDYLYFVKADMSLGQYAFSRAYINFVEQQDIFMFREKFDNYVF 58
Query: 79 VNEKGVQFKTIVEYAPSQRVPKQW--SKKDGREGTLLKDPEYLEFLEFISKPVENLPSAE 136
V+ KG ++ +VE+AP QR+PK+ KKD + GT+ DP Y+ FLE + AE
Sbjct: 59 VDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCGTIESDPYYISFLESLKN-----QEAE 113
Query: 137 IQLERREAERA----GAAKEALIVTPLMDFVRQKRAAK 170
+ + + E + + + TPL+++V+Q++ K
Sbjct: 114 SNISQPKTEYSYQPPDNTPKKVTTTPLLEYVKQRKQEK 151
>gi|229891778|sp|B0S733.2|REN3A_DANRE RecName: Full=Regulator of nonsense transcripts 3A; AltName:
Full=Up-frameshift suppressor 3 homolog A
Length = 452
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++++ E + +++ F S +RAY++FK PED++
Sbjct: 43 SKVVIRRLPPSLSKDQLQEHLSPL--PSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 100
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q+V K+ KK + GT+ +DPEY FLE S
Sbjct: 101 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 160
Query: 127 KPVE-NLPSAEIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAK 170
E ++ + E L EA+ R AK TPL+++++ K+ K
Sbjct: 161 CDEEKSMANPETLLGEIEAKTRELIAKR---TTPLLEYIKNKKLEK 203
>gi|303318159|ref|XP_003069079.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108765|gb|EER26934.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 600
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 20/177 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTS---QKHQSCARAYLDF 60
R K++VR LPP +TQ F + A+ G+ +W +++ GK S K +RAYL
Sbjct: 42 RLKLLVRRLPPGLTQAEFETALGPAWTVGKGKLDWFAYKPGKLSADPSKPSKPSRAYLRV 101
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
V E ++ F + + + +EYAP RVP +KD R GT+ +
Sbjct: 102 TASAIVPELSDRVRETSFQDSRNTFADPALLGPPTLEYAPYPRVPGGKVRKDARMGTIDQ 161
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DPE++ FLE ++ PV PS + +E + E+ + +TPL+ +++ K+A+KA
Sbjct: 162 DPEFIAFLESLTNPVPK-PSTDDIVEPDKDEK-------ITITPLIQYLKDKKASKA 210
>gi|225680260|gb|EEH18544.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 612
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K R K+++R LPP +T F + + G+ +W+ FR GK S+ K R
Sbjct: 32 KAATPRLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRAKPSKPTR 91
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGRE 109
YL V E +E F + + ++ EYAP RVP ++DGR+
Sbjct: 92 VYLRVTSTPLVEELSEKVRQSSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRQDGRQ 151
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ D +++ FLE ++ PV + +I E A +E +TPL+ F+R+K+A
Sbjct: 152 GTIDLDSDFIAFLESLTNPVTKT-TVDISAE-------DAKEEKSTITPLIQFLREKKAN 203
Query: 170 KAGPRRLLSNGKLSRRASG 188
K R +S K SR A G
Sbjct: 204 KG--REAVSPAKPSRHARG 220
>gi|395527256|ref|XP_003765766.1| PREDICTED: regulator of nonsense transcripts 3A [Sarcophilus
harrisii]
Length = 554
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 95/171 (55%), Gaps = 22/171 (12%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
VV+R LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L F
Sbjct: 133 VVIRRLPPSLTKEQLEEQLHPLPA--HDYFEFCTADPSLYPHLYSRAYINFRNPDDILLF 190
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKP 128
+ F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ +DPEY +FLE
Sbjct: 191 RDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRKFLETYCVE 250
Query: 129 VENLPS------AEIQLERREAERAGAAKEALI---VTPLMDFVRQKRAAK 170
E + + EI+ + RE LI TPL+++++ ++ K
Sbjct: 251 EEKISANPETLLGEIEAKTRE----------LIARRTTPLLEYIKNRKLEK 291
>gi|449276361|gb|EMC84924.1| Regulator of nonsense transcripts 3A, partial [Columba livia]
Length = 381
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 95/165 (57%), Gaps = 8/165 (4%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP +T+ EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 1 QVVIRRLPPCLTKEQLEEQLHPLPA--HDYFEFCTADPSLYPHLYSRAYINFRNPEDILL 58
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISK 127
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 59 FRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDTKAGSIEDDPEYRKFLESYCA 118
Query: 128 PVENLPS-AEIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAK 170
E + + EI L EA+ R A+ TPL+++++ ++ K
Sbjct: 119 DEEKICANPEILLGEIEAKTRELIARR---TTPLLEYIKNRKLEK 160
>gi|389644656|ref|XP_003719960.1| hypothetical protein MGG_03912 [Magnaporthe oryzae 70-15]
gi|351639729|gb|EHA47593.1| hypothetical protein MGG_03912 [Magnaporthe oryzae 70-15]
gi|440470677|gb|ELQ39739.1| hypothetical protein OOU_Y34scaffold00487g84 [Magnaporthe oryzae
Y34]
gi|440487905|gb|ELQ67669.1| hypothetical protein OOW_P131scaffold00303g13 [Magnaporthe oryzae
P131]
Length = 676
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 24/199 (12%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K P++ K+V+R LPP I++ + ++ + G+ W SF GKTS K +R
Sbjct: 35 KAPIEGQKIVIRRLPPGISEEEVLKYLEDEWQPNKGKVGWFSFMPGKTSNDPSKPSRPSR 94
Query: 56 AYLDFKKPEDVLEF------AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
AYL + E V+ A++ + + ++ + +E + +++P ++ D R+
Sbjct: 95 AYLHLLRTEYVMPLMDQVRSAQWEDANGTCSDPCLCGPPAMEMSIYKKIPTSKNRADARQ 154
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIV----TPLMDFVRQ 165
GT+ +DPE++ FLE ++ P + + E + G +E IV TPL+D++R+
Sbjct: 155 GTIDQDPEFMAFLESLANPTGD--------KDPETDHVGQEEEQPIVKASSTPLIDYLRE 206
Query: 166 KRAAKAGPRRLLSNGKLSR 184
K+A K+ + +GK SR
Sbjct: 207 KKANKSKDTSVARSGKHSR 225
>gi|242209718|ref|XP_002470705.1| predicted protein [Postia placenta Mad-698-R]
gi|220730282|gb|EED84142.1| predicted protein [Postia placenta Mad-698-R]
Length = 479
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAF-GGRYNWVSFRQGKTSQ---KHQSCARAYLDFK 61
+R K VVR LPP + + F + ++ W ++ GK+ + K +RAY+ FK
Sbjct: 35 ERLKTVVRRLPPNLPENIFWQSVEPWVREDTVTWKAYYLGKSKKRLNKENISSRAYIAFK 94
Query: 62 KPEDVLE-FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
EDVL F++ ++GHVF ++ G + +VE+AP Q+VP K D R GT+ KD EY+
Sbjct: 95 N-EDVLATFSKEYDGHVFRDKAGNESIAVVEFAPYQKVPSDKKKVDTRMGTIEKDEEYIS 153
Query: 121 FLEFI----SKPVE 130
FLE + +KPV+
Sbjct: 154 FLESLKEGSNKPVD 167
>gi|393244442|gb|EJD51954.1| hypothetical protein AURDEDRAFT_181525 [Auricularia delicata
TFB-10046 SS5]
Length = 392
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQIDG-AFGGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
+DR KVVVR LPP + + F + + A W SF GK S+ K +RAY+ F
Sbjct: 10 VDRLKVVVRRLPPNLPEDVFWDSVKPWANDDTVQWRSFVAGKISKRTIKENVPSRAYITF 69
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K E V F+ ++GH+F ++ G + +VE+AP Q++P K D + TLL+D Y
Sbjct: 70 KTHESVAIFSREYDGHIFRDKSGRETAAVVEFAPYQKIPPTEVKPDKYKDTLLRDAHYTH 129
Query: 121 FLEFI 125
+L+ +
Sbjct: 130 WLDEL 134
>gi|317026432|ref|XP_001389592.2| nonsense-mediated mRNA decay protein Upf3 [Aspergillus niger CBS
513.88]
Length = 582
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 18/174 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++VR LPP +TQ F + + GG+ +W ++ GK S+ K +RAY+
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDPAKPSRPSRAYIHV 98
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLK 114
+ + + F++ + ++ E+AP ++ S+KD R+GT+ +
Sbjct: 99 MSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTIDQ 158
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
DPE++ FLE +++P+ E + + KE + VTPL+ ++R+K+A
Sbjct: 159 DPEFIAFLESLTQPLAKPAPVESGADGED------KKETVTVTPLVQYIREKKA 206
>gi|449546075|gb|EMD37045.1| hypothetical protein CERSUDRAFT_95309 [Ceriporiopsis subvermispora
B]
Length = 501
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTS---QKHQSCARAYLDFK 61
DR K VVR LPP + + F + + W + QGK K +RAY+ FK
Sbjct: 37 DRFKTVVRRLPPNLPEEIFWQSVQKWVTEETIQWKIYYQGKFKTRMNKENIQSRAYIAFK 96
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
E + F+ ++GH+F ++ G + +VE+AP Q++P + K D R GT+ KD +Y+ F
Sbjct: 97 NEEILATFSREYDGHLFRDKAGNESSAVVEFAPFQKIPSEKKKVDSRMGTIEKDEDYISF 156
Query: 122 LEFISKPV 129
LE ++ P
Sbjct: 157 LESLNNPA 164
>gi|403418915|emb|CCM05615.1| predicted protein [Fibroporia radiculosa]
Length = 499
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRY-NWVSFRQGKTSQ---KHQSCARAYLDFK 61
+R K VVR LPP + + F + + W S+ QGK + K +RAY+ FK
Sbjct: 38 ERLKTVVRRLPPNLPEDIFWQSVQQWVTAETATWKSYHQGKFRKRLNKENIPSRAYIVFK 97
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
E + F+ ++GH+F ++ G + +VE+AP Q+VP + K DGR GT+ KD +Y+ F
Sbjct: 98 DEELLANFSREYDGHLFRDKAGNESVAVVEFAPFQKVPSEKKKADGRMGTIEKDEDYVSF 157
Query: 122 L 122
L
Sbjct: 158 L 158
>gi|296189035|ref|XP_002742608.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1
[Callithrix jacchus]
Length = 472
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLHPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 126 LFRDRFDGYVFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + EI L EA+ A TPL+++++ ++ K
Sbjct: 186 VEEEKTSTNPEILLGEMEAKTRELI--ARRTTPLLEYIKNRKLEK 228
>gi|395329442|gb|EJF61829.1| hypothetical protein DICSQDRAFT_136334 [Dichomitus squalens
LYAD-421 SS1]
Length = 486
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 19/184 (10%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRY------NWVSFRQGKTS---QKHQSCARA 56
+R K VVR LPP + + F + + G++ W ++ QGK K +RA
Sbjct: 33 ERLKTVVRRLPPNLPEDIFWQSV-----GKWVTDETVTWKAYYQGKFKTRLNKENIPSRA 87
Query: 57 YLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDP 116
Y+ F+ E + F+ ++GH+F ++ G + IVE+AP Q+VP + K D R GT+ KD
Sbjct: 88 YIAFRDEEILATFSREYDGHLFRDKNGNESIAIVEFAPFQKVPNEKKKADSRAGTIEKDE 147
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEAL-IVTPLMDFVRQKRAAKAGPRR 175
+Y+ FLE + + + S L+ E A L TPL++ ++ +++A+
Sbjct: 148 DYISFLESL----KEVSSKPFDLDTLETLIASTQPAPLPTTTPLLEALKAEKSAQKDKES 203
Query: 176 LLSN 179
+L N
Sbjct: 204 ILRN 207
>gi|344283648|ref|XP_003413583.1| PREDICTED: regulator of nonsense transcripts 3A-like [Loxodonta
africana]
Length = 511
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 82 SKVVIRRLPPSLTKEQLDEQLHPLPA--HDYFEFCTANLSLYPHLYSRAYINFRNPDDIL 139
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DP+Y +FLE S
Sbjct: 140 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKTGSIEDDPDYKKFLEVYS 199
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 200 MEEEKT-SANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEK 242
>gi|255637185|gb|ACU18923.1| unknown [Glycine max]
Length = 72
Score = 82.0 bits (201), Expect = 7e-13, Method: Composition-based stats.
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK 105
+RAY+DFK P+DV EF EFF+GHVFV+E+G Q+K IVEYAPSQ VPK +KK
Sbjct: 3 SRAYIDFKCPDDVFEFTEFFDGHVFVSERGAQYKVIVEYAPSQCVPKPSAKK 54
>gi|195122768|ref|XP_002005883.1| GI18844 [Drosophila mojavensis]
gi|193910951|gb|EDW09818.1| GI18844 [Drosophila mojavensis]
Length = 469
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 29/173 (16%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
K+VVR+LPP +T+ F EQ+D + + S ++ RAY+D P+D+ E
Sbjct: 21 KIVVRHLPPTMTEKEFLEQVDPLPKNESYY--YCPADWSLGQEATCRAYIDMS-PKDIDE 77
Query: 69 FAEF---FNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSK-KDGREGTLLKDPEYLEFLEF 124
+F F+G+VFV+ KG ++ IVEYAP Q K ++ D + T+ K+P + EFL+
Sbjct: 78 IIQFRDRFDGYVFVDSKGAEYVAIVEYAPFQWFLKNKARSHDNKVNTIEKEPHFQEFLQK 137
Query: 125 ISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFVRQKR 167
+++ ER EA R G K E + TPL+ ++ K+
Sbjct: 138 LAE------------EREEANRLGDVKIDFNFESRNEEKVKSTPLLQYLANKK 178
>gi|154310975|ref|XP_001554818.1| hypothetical protein BC1G_06466 [Botryotinia fuckeliana B05.10]
gi|347832513|emb|CCD48210.1| hypothetical protein [Botryotinia fuckeliana]
Length = 624
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
+ K++VR L P +T+ F + + G+ +W ++ GK S+ K +RAYL
Sbjct: 38 KMKLIVRRLAPGLTEAEFCSSLGDEWKVGQGKVDWFQYKPGKDSKDPSKPSRPSRAYLHL 97
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTI------VEYAPSQRVPKQWSKK-DGREGTLL 113
+ +L F++ F + K + VE+AP RVP ++ D R GT+
Sbjct: 98 TNSDHLLPFSDVVRKSSFEDAKNTYTNSCLIGPPTVEFAPYSRVPAGLKRRTDARAGTID 157
Query: 114 KDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+DPE++ FLE ++ PV + E+ E +A A E + +TPL+ F++ K+A K
Sbjct: 158 QDPEFMAFLEGLANPVT---TKEVGAEGEDAPTGKA--EKVTITPLVQFLKDKKANK 209
>gi|149599397|ref|XP_001506340.1| PREDICTED: regulator of nonsense transcripts 3A-like, partial
[Ornithorhynchus anatinus]
Length = 379
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP +T+ EQ+ +++ F S RAY++F+ P+D+L
Sbjct: 14 QVVIRRLPPTLTKEQLEEQLHPLPA--HDYFEFCAADPSLYPHLYTRAYINFRNPDDILL 71
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISK 127
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KK + GT+ +DPEY +FLE
Sbjct: 72 FRDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGTIEEDPEYRKFLETYCV 131
Query: 128 PVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E + SA + E E A TPL++++R ++ K
Sbjct: 132 DEEKI-SANPETLLGEIEAKTRELIARRTTPLLEYIRSRKLEK 173
>gi|297694522|ref|XP_002824527.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Pongo
abelii]
Length = 476
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F E F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE
Sbjct: 126 LFRERFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 186 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 228
>gi|225706162|gb|ACO08927.1| Regulator of nonsense transcripts 3B [Osmerus mordax]
Length = 149
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TK+V+R LPP++T+ EQ+ +++ F TS ARAY++FK ED++
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSSDTSMYPHLFARAYINFKNQEDIV 93
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTL 112
F + F+G+VF++ +G ++ IVE+AP Q++ K+ SKK D + GT+
Sbjct: 94 LFRDRFDGYVFIDNRGQEYPAIVEFAPFQKIAKKRSKKRDAKSGTI 139
>gi|410947764|ref|XP_003980612.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3A [Felis catus]
Length = 570
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 32/178 (17%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPSLTKEQLEEQLHPLPA--HDYFEFFTADFSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ K + G++ DPEY +FLE
Sbjct: 126 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKXKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALI--------------VTPLMDFVRQKRAAK 170
E E+ A E L+ TPL++++R ++ K
Sbjct: 186 V---------------EEEKTNANPETLLGDMEAKTRELIARRTTPLLEYIRNRKLEK 228
>gi|159124599|gb|EDP49717.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
fumigatus A1163]
Length = 577
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K P R K++VR LPP +TQ F + + G+ +W ++ GK S+ K +R
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENAMGPEWMVGAGKVDWYQYKPGKVSKDYAKPSRPSR 93
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGRE 109
AY+ E + ++ FV+ + ++ E+AP ++P +KD R+
Sbjct: 94 AYIHVTSSEHIAPLSDKVRQTSFVDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDARQ 153
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
GT+ +DPE++ FLE +++P+ + + + E KE + TPL+ ++
Sbjct: 154 GTIDQDPEFIAFLESLTQPITKPTTVDTPTDAEE------KKETVTTTPLVQYI 201
>gi|402902529|ref|XP_003914153.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Papio
anubis]
Length = 463
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 92/164 (56%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE S
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYS 185
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 186 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 228
>gi|195347253|ref|XP_002040168.1| GM15496 [Drosophila sechellia]
gi|194135517|gb|EDW57033.1| GM15496 [Drosophila sechellia]
Length = 491
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 39/179 (21%)
Query: 8 TKVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF- 60
K+V+R+LPP +T+ F +Q+ D + + +W S ++ RAY+D
Sbjct: 30 VKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADW--------SLGQEATCRAYIDMS 81
Query: 61 -KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEY 118
K ++VL+F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ + Y
Sbjct: 82 SKDIDEVLQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESESHY 141
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFVRQKR 167
EF++ +++ ER EA R G K E + TPL+ ++ K+
Sbjct: 142 QEFIKRLAQ------------EREEASRVGDVKIDFNFERRTEENVKSTPLLQYLANKK 188
>gi|301622005|ref|XP_002940331.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 463
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++FK +D++
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPL--PDHDYFEFFSNDSSLFPHMFSRAYINFKSQDDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q+V K+ SKK + GT+ DPEY +FL+ +
Sbjct: 95 LFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLDSYT 154
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA+ A TPL+ F++ +
Sbjct: 155 LDEEKLTSTPETLLEEIEAKNKEMI--AKKTTPLLSFLKNR 193
>gi|301622007|ref|XP_002940332.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 465
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 6/161 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++FK +D++
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPL--PDHDYFEFFSNDSSLFPHMFSRAYINFKSQDDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q+V K+ SKK + GT+ DPEY +FL+ +
Sbjct: 95 LFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLDSYT 154
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
E L S E LE EA+ A TPL+ F++ +
Sbjct: 155 LDEEKLTSTPETLLEEIEAKNKEMI--AKKTTPLLSFLKNR 193
>gi|70992361|ref|XP_751029.1| nonsense-mediated mRNA decay protein Upf3 [Aspergillus fumigatus
Af293]
gi|66848662|gb|EAL88991.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
fumigatus Af293]
Length = 581
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K P R K++VR LPP +TQ F + + G+ +W ++ GK S+ K +R
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENAMGPEWMVGAGKVDWYQYKPGKVSKDYAKPSRPSR 93
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGRE 109
AY+ E + ++ FV+ + ++ E+AP ++P +KD R+
Sbjct: 94 AYIHVTSSEHIAPLSDKVRQTSFVDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDARQ 153
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
GT+ +DPE++ FLE +++P+ + + + E KE + TPL+ ++
Sbjct: 154 GTIDQDPEFIAFLESLTQPITKPTTVDTPTDAEE------KKETVTTTPLVQYI 201
>gi|255930133|ref|XP_002556626.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581239|emb|CAP79003.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 554
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 94/185 (50%), Gaps = 25/185 (13%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFG-------GRYNWVSFRQGKTSQ---KHQ 51
K P R K+++R LPP +TQ +++ A G G +W+ ++ GK S+ K
Sbjct: 32 KPPAPRLKLLIRRLPPGLTQ----SELESALGDQWKAGAGNVDWLQYKPGKVSKDPNKPS 87
Query: 52 SCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKK 105
+RAY+ E V ++ F + + I+ E+AP + P S+K
Sbjct: 88 RPSRAYIHVVSTECVSSLSDAVRRASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRK 147
Query: 106 DGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQ 165
D R+GT+ +D +++ FLE +++P+ P+A E ++ KE ++ TPL+ F++
Sbjct: 148 DARQGTIDQDSDFIAFLESLTQPITK-PAAVDSAADGEDKK----KETIMTTPLVQFIKD 202
Query: 166 KRAAK 170
K+A+K
Sbjct: 203 KKASK 207
>gi|126337391|ref|XP_001373291.1| PREDICTED: regulator of nonsense transcripts 3A-like [Monodelphis
domestica]
Length = 472
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 94/168 (55%), Gaps = 16/168 (9%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
VV+R LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L F
Sbjct: 51 VVIRRLPPSLTKEQLEEQLHPLPA--HDYFEFCTADPSLYPHLYSRAYINFRNPDDILLF 108
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKP 128
+ F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ +DPEY +FLE
Sbjct: 109 RDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRKFLEAYCVE 168
Query: 129 VENLPS------AEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E + + EI+ + RE A TPL+++++ ++ K
Sbjct: 169 EEKISANPETLLGEIEAKTREL-------IARRTTPLLEYIKNRKLEK 209
>gi|410056912|ref|XP_003954560.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B, partial [Pan troglodytes]
Length = 397
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 12 VRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAE 71
+R LPP +T+ E + +++ F TS ARAY++FK ED++ F +
Sbjct: 8 IRRLPPTLTKEPLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 65
Query: 72 FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKPVE 130
F+G+VF++ KG ++ IVE+AP Q+ K+ +KK + GT+ DPEY +FLE + E
Sbjct: 66 RFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNE 125
Query: 131 NLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
+ S E LE EA+ R AK+ TPL+ F++ K+
Sbjct: 126 KMTSTPETLLEEIEAKNRELIAKKT---TPLLSFLKNKQ 161
>gi|350638598|gb|EHA26954.1| hypothetical protein ASPNIDRAFT_205576 [Aspergillus niger ATCC
1015]
Length = 587
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 88/178 (49%), Gaps = 22/178 (12%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ-------KHQSCARA 56
R K++VR LPP +TQ F + + GG+ +W ++ GK S+ K +RA
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDMLYSPAKPSRPSRA 98
Query: 57 YLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREG 110
Y+ + + + F++ + ++ E+AP ++ S+KD R+G
Sbjct: 99 YIHVMSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQG 158
Query: 111 TLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
T+ +DPE++ FLE +++P+ E + + KE + VTPL+ ++R+K+A
Sbjct: 159 TIDQDPEFIAFLESLTQPLAKPAPVESGADGED------KKETVTVTPLVQYIREKKA 210
>gi|425775443|gb|EKV13712.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum PHI26]
gi|425783735|gb|EKV21562.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum Pd1]
Length = 551
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDG---AFGGRYNWVSFRQGKTSQ---KHQSCAR 55
K P R K+++R LPP +T+ + A G +W+ F+ GK S+ K +R
Sbjct: 32 KPPAPRLKLLIRRLPPGLTRAELENSLGDQWKAGAGNVDWLQFKPGKVSKDPNKSSRPSR 91
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGRE 109
AY+ E V ++ F + + I+ E+AP + P S+KD R+
Sbjct: 92 AYVHVVSTECVSSLSDAVRQASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDARQ 151
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ +D E++ FLE +++P+ P+A E ++ KE ++ TPL+ F++ K+A+
Sbjct: 152 GTIDQDSEFIAFLESLTQPITR-PAAVDSTADCEDKK----KETIVTTPLVQFIKDKKAS 206
Query: 170 K 170
K
Sbjct: 207 K 207
>gi|83768844|dbj|BAE58981.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 558
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 17/168 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQKHQSCARAYLDFKKP 63
R K++VR LPP +TQ F + + G+ +W ++ GK S+ +
Sbjct: 44 RLKLLVRRLPPGLTQAEFEVAVGPEWKLGAGKIDWFQYKPGKVSKDDHIIPLS------- 96
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
+ + F + N+ + VEYAP +VP +KD R+GT+ +DP+++ FLE
Sbjct: 97 -NKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTIDQDPDFIAFLE 155
Query: 124 FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
+++P+ P+ E + E KE + TPL+ ++++K+A KA
Sbjct: 156 SLTQPITKPPTVENATDAEE------KKETVTTTPLVQYIKEKKANKA 197
>gi|193610839|ref|XP_001942591.1| PREDICTED: hypothetical protein LOC100159460 [Acyrthosiphon pisum]
Length = 446
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 12/179 (6%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVVVR LPP +T+ F ++ +N++ F G +R Y++F K +D+
Sbjct: 41 KVVVRRLPPTMTEERFLNEVSPL--PEFNYMYFIPGDLHAVPFHHSRVYINFLKEDDMYM 98
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF-LEFISK 127
F + F+G+VFV++ G ++ VE AP QR+PK+ KD G + ++P +LEF F K
Sbjct: 99 FTDKFDGYVFVDDTGDEYPATVELAPYQRIPKKKLDKDANWGKIHENPVFLEFKRNFEQK 158
Query: 128 PVE-NLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRR 185
++ L + + E E ++E + TPL++++ A + +R+ N + RR
Sbjct: 159 TIDTTLKTTQHFFESVE----DKSQEQDLSTPLLEYL----AKQNDKQRVRVNQRDERR 209
>gi|320031755|gb|EFW13714.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 599
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 20/177 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTS---QKHQSCARAYLDF 60
R K++VR LPP +TQ F + + G+ +W++++ GK S K +RAYL
Sbjct: 42 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWLAYKPGKLSADPSKPSKPSRAYLRV 101
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
V E ++ F + + + +EYAP RVP +KD R GT+ +
Sbjct: 102 TASAIVPELSDRVRETSFQDSRNTFADPALLGPPTLEYAPYPRVPGGKVRKDARMGTIDQ 161
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DPE++ FLE ++ PV PS + +E + E+ + +TPL+ +++ K+A+KA
Sbjct: 162 DPEFIAFLESLTNPVPK-PSTDDIVEPDKDEK-------ITITPLIQYLKDKKASKA 210
>gi|313227796|emb|CBY22944.1| unnamed protein product [Oikopleura dioica]
Length = 322
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKV +R LPP +T+P E I G +++ F + S RAY+ F EDV+
Sbjct: 7 TKVTIRRLPPDLTEPELKE-ILGQLPP-HDYFKFHKADASLAPAHTTRAYIKFVSFEDVI 64
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISK 127
EF + F+G +F +++G ++ +E A S +P+ + D GT+ D ++ EF E
Sbjct: 65 EFRDNFDGRIFEDKRGHKYMAQIELAISSLIPRGKQRDDRHCGTIEDDEDFKEFKEAYEA 124
Query: 128 PVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVR 164
+ I+ +EA ++ + TPL+DFVR
Sbjct: 125 DKPEVQQINIEEYLKEAAAKEEERKKPMTTPLIDFVR 161
>gi|40882583|gb|AAR96203.1| AT18503p [Drosophila melanogaster]
Length = 492
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 39/175 (22%)
Query: 8 TKVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K+V+R+LPP +T+ F +Q+ D + + +W S ++ RAY+D
Sbjct: 30 VKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADW--------SLGQEATCRAYIDMS 81
Query: 62 KPE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEY 118
+ +V++F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ +P Y
Sbjct: 82 SKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHY 141
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFV 163
EF++ +++ ER EA R G K E + TPL+ ++
Sbjct: 142 QEFIKRLAQ------------EREEASRMGDVKIDFNFERRTEEKVKSTPLLQYL 184
>gi|301622003|ref|XP_002940330.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 508
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 91/159 (57%), Gaps = 6/159 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++FK +D++
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPD--HDYFEFFSNDSSLFPHMFSRAYINFKSQDDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q+V K+ SKK + GT+ DPEY +FL+ +
Sbjct: 95 LFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLDSYT 154
Query: 127 KPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVR 164
E L S E LE EA+ A TPL+ F++
Sbjct: 155 LDEEKLTSTPETLLEEIEAKNKEMI--AKKTTPLLSFLK 191
>gi|67516447|ref|XP_658109.1| hypothetical protein AN0505.2 [Aspergillus nidulans FGSC A4]
gi|40747448|gb|EAA66604.1| hypothetical protein AN0505.2 [Aspergillus nidulans FGSC A4]
gi|259489240|tpe|CBF89348.1| TPA: nonsense-mediated mRNA decay protein Upf3, putative
(AFU_orthologue; AFUA_6G11460) [Aspergillus nidulans
FGSC A4]
Length = 590
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 23/174 (13%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQKHQS--------CAR 55
R K++VR LPP +TQ F + + GR +W ++ GK S+ H + +R
Sbjct: 37 RLKLLVRRLPPGLTQEEFETALGAEWKLGAGRVSWAQYKPGKVSKDHGNHSPAKPSRPSR 96
Query: 56 AYLDFKKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
AYL E + ++ F + N+ + +E+AP ++P +KD R
Sbjct: 97 AYLYVVSSEHIAPLSDKVRSTSFLDARNTANDPVLLGPPNLEFAPYAKIPGSRVRKDARL 156
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
GT+ +DPE+++FLE +++P+ AE E + KE + TPL+ ++
Sbjct: 157 GTIDQDPEFIQFLESLTQPITKPTLAETSAEGED------KKETVTTTPLVQYI 204
>gi|296481607|tpg|DAA23722.1| TPA: UPF3 regulator of nonsense transcripts homolog A isoform 1
[Bos taurus]
Length = 508
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQLHPLPA--HDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + S E L EA+ +E + TPL+++++ ++ K
Sbjct: 185 VEEEKTSVSPETLLGDIEAK----TRELIARRTTPLLEYIKNRKLEK 227
>gi|315053341|ref|XP_003176044.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
gi|311337890|gb|EFQ97092.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
Length = 606
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF----GGRYNWVSFRQGKTSQ---KHQSCA 54
KG R K+ VR LPP +TQ F E G + G+ +W F++GK S K
Sbjct: 37 KGNAPRLKLHVRRLPPGLTQAEF-ESTLGDYWKVGQGKIDWFLFKEGKVSTDPSKPSRPG 95
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
RAYL + E +E F N+ + +EYAP RVP ++ D R
Sbjct: 96 RAYLRVTSSVTIPELSEAIRQTAFRDARNTCNDSALLGPPTLEYAPFSRVPSVKTRNDAR 155
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQ 165
GT+ +D E++ FLE ++ PV P E AE A A E +TPL+ ++R+
Sbjct: 156 VGTIDQDAEFIAFLESLTNPVTKPP------EEETAETADKA-EKPTITPLIQYLRE 205
>gi|358414874|ref|XP_002701034.2| PREDICTED: regulator of nonsense transcripts 3A [Bos taurus]
gi|359071208|ref|XP_002692049.2| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Bos
taurus]
Length = 512
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQLHPLPA--HDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 125 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 184
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + S E L EA+ +E + TPL+++++ ++ K
Sbjct: 185 VEEEKTSVSPETLLGDIEAK----TRELIARRTTPLLEYIKNRKLEK 227
>gi|121699958|ref|XP_001268244.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
clavatus NRRL 1]
gi|119396386|gb|EAW06818.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
clavatus NRRL 1]
Length = 580
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 19/169 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQKHQSCAR---AYLDF 60
R K++VR LPP +TQ F + + A G G+ +W ++ GK ++ H +R AY+
Sbjct: 38 RLKLLVRRLPPGLTQTEFENALGSEWAIGAGKVDWYQYKPGKIAKDHAKPSRPSRAYIHV 97
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
E + ++ F + VN+ + +E++P ++P +KD R+GT+ +
Sbjct: 98 TSSEHIASLSDKVRQTPFIDSRNTVNDPVLLGPPSLEFSPYAKIPGSRVRKDARQGTIDQ 157
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
DPE++ FLE +++P+ + +E EA+ KE + TPL+ ++
Sbjct: 158 DPEFIAFLESLTQPI----TKPAPVESAEADE---KKETVTTTPLVQYI 199
>gi|432931218|ref|XP_004081608.1| PREDICTED: regulator of nonsense transcripts 3A-like [Oryzias
latipes]
Length = 462
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +++ EQ+ Y++ F S +RAY++FK ED++
Sbjct: 45 SKVVIRRLPPNLSKEQLEEQLSPL--PSYDYFEFFSADQSLYPHLFSRAYINFKNTEDIV 102
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q++ K+ KK + G++ +DPEY FLE S
Sbjct: 103 LFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFLENYS 162
Query: 127 KPVE-NLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
E ++ + E L E KE + TPL+++++ K+ K
Sbjct: 163 CDEEKSMANPETLL----GEIEAKTKELIAKRTTPLLEYIKIKKIEK 205
>gi|426236951|ref|XP_004012426.1| PREDICTED: regulator of nonsense transcripts 3A [Ovis aries]
Length = 487
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 97/167 (58%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 41 SKVVIRRLPPSLTKEQLEQQLHPLPA--HDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 98
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 99 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIDDDPEYKKFLETYC 158
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + S E L EA+ +E + TPL+++++ ++ K
Sbjct: 159 VEEEKTSVSPETLLGDIEAK----TRELIARRTTPLLEYIKNRKLEK 201
>gi|24762426|ref|NP_726375.1| Upf3 [Drosophila melanogaster]
gi|21626676|gb|AAF47091.2| Upf3 [Drosophila melanogaster]
Length = 492
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 39/175 (22%)
Query: 8 TKVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K+V+R+LPP +T+ F +Q+ D + + +W S ++ RAY+D
Sbjct: 30 VKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADW--------SLGQEATCRAYIDMS 81
Query: 62 KPE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEY 118
+ +V++F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ +P Y
Sbjct: 82 SKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHY 141
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFV 163
EF++ +++ ER EA R G K E + TPL+ ++
Sbjct: 142 QEFIKRLAQ------------EREEASRMGDVKIDFNFERRTEEKVKSTPLLQYL 184
>gi|17863070|gb|AAL40012.1| SD10857p [Drosophila melanogaster]
Length = 450
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 88/175 (50%), Gaps = 39/175 (22%)
Query: 8 TKVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K+V+R+LPP +T+ F +Q+ D + + +W S ++ RAY+D
Sbjct: 30 VKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKADW--------SLGQEATCRAYIDMS 81
Query: 62 KPE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEY 118
+ +V++F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ +P Y
Sbjct: 82 SKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESEPHY 141
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFV 163
EF++ +++ ER EA R G K E + TPL+ ++
Sbjct: 142 QEFIKRLAQ------------EREEASRMGDVKIDFNFERRTEEKVKSTPLLQYL 184
>gi|426376075|ref|XP_004054834.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Gorilla
gorilla gorilla]
Length = 476
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 186 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 228
>gi|12711676|ref|NP_075387.1| regulator of nonsense transcripts 3A isoform hUpf3p [Homo sapiens]
gi|60390646|sp|Q9H1J1.1|REN3A_HUMAN RecName: Full=Regulator of nonsense transcripts 3A; AltName:
Full=Nonsense mRNA reducing factor 3A; AltName:
Full=Up-frameshift suppressor 3 homolog A; Short=hUpf3
gi|12232322|gb|AAG48510.1| hUPF3A [Homo sapiens]
gi|119629653|gb|EAX09248.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_b [Homo sapiens]
Length = 476
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 186 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 228
>gi|195586209|ref|XP_002082870.1| GD24999 [Drosophila simulans]
gi|194194879|gb|EDX08455.1| GD24999 [Drosophila simulans]
Length = 494
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 39/179 (21%)
Query: 8 TKVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF- 60
K+V+R+LPP +T+ F +Q+ D + + +W S ++ RAY+D
Sbjct: 30 VKIVMRHLPPTMTEAQFLDQVGPLPENDSYYYCKPDW--------SLGQEATCRAYIDMS 81
Query: 61 -KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEY 118
K ++VL+F + F+G+VFV+ KGV++ IVEYAP Q K ++ D + T+ + Y
Sbjct: 82 SKDIDEVLQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIESESHY 141
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFVRQKR 167
EF++ +++ ER EA R G K E + TPL+ ++ K+
Sbjct: 142 QEFIKRLAQ------------EREEASRVGDVKIDFNFERRTEENVKSTPLLQYLANKK 188
>gi|167535258|ref|XP_001749303.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772169|gb|EDQ85824.1| predicted protein [Monosiga brevicollis MX1]
Length = 402
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 87/174 (50%), Gaps = 3/174 (1%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K P + ++V+R LPP + + ++ + ++ F G + + ARAY+ F
Sbjct: 13 KAPKENLRLVIRRLPPKLPE-EIMMRLLAPYQQFFSNFYFVVGDPTLEKNCFARAYVKFN 71
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
+ +L FA F+GH+F + G + + VE AP VP + + D +GT+ DP+Y F
Sbjct: 72 NRDAMLHFARGFDGHLFKGQDGSEHRARVECAPFADVPPKKA-PDPLQGTIEDDPDYKRF 130
Query: 122 LEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRR 175
LE E LPSAE L+ EA+ A A A TPL FV K KA +R
Sbjct: 131 LEERDAKPEALPSAEEWLKEHEAQLAELADPA-DATPLQAFVGLKLEEKAKAKR 183
>gi|194754295|ref|XP_001959431.1| GF12056 [Drosophila ananassae]
gi|190620729|gb|EDV36253.1| GF12056 [Drosophila ananassae]
Length = 503
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLD--FKKPEDV 66
K+VVR+LPP +T+ F EQ+ Y + F S ++ RAY+D K DV
Sbjct: 35 KIVVRHLPPTMTESEFLEQVGPLPENDYYY--FCPADWSLGQEATCRAYIDMSLKDISDV 92
Query: 67 LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLLKDPEYLEFLEFI 125
L+F + F+G+VFV+ KG ++ IVEYAP Q K ++ D + T+ + Y EF++ +
Sbjct: 93 LQFRDRFDGYVFVDNKGSEYMAIVEYAPFQSFLKNKARNDDAKVNTIESESHYQEFIQRL 152
Query: 126 SKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFVRQKR 167
+ ER EA R G K E TPL+ ++ K+
Sbjct: 153 AD------------EREEASRLGDVKIDFNFERRLDENCKSTPLLQYLANKK 192
>gi|342320545|gb|EGU12485.1| Hypothetical Protein RTG_01519 [Rhodotorula glutinis ATCC 204091]
Length = 444
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 30/180 (16%)
Query: 7 RTKVVVRNLPPAITQPAFTEQI-----------DGAFGG-RYNWVSFRQGKTSQ----KH 50
R K+VVR LPP + F + + +G G + W ++QGK + K
Sbjct: 15 RLKLVVRRLPPDLPPAVFWKTVSPWVTREDVDDEGQEGAEKVVWSEYKQGKVRRSGKDKD 74
Query: 51 QSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREG 110
+RAY+ F+ P+ ++ F+ ++G F ++ G + +VE+AP QR+P +K D R+G
Sbjct: 75 SVQSRAYITFRTPDALVAFSRGYDGWSFRDKTGNVSQAVVEFAPYQRIPTAPAKADPRQG 134
Query: 111 TLLKDPEYLEFLE-FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
T+ DP++L F E + P P+ + + TPL++++RQ++AA
Sbjct: 135 TIDDDPDFLAFQEALTAAPATPQPAETPAVNPKS-------------TPLLEYLRQQKAA 181
>gi|392864553|gb|EAS27556.2| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 629
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTS---QKHQSCARAYLDF 60
R K++VR LPP +TQ F + + G+ +W +++ GK S K +RAYL
Sbjct: 71 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWFAYKPGKLSADPSKPSKPSRAYLRV 130
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
V E ++ F + + + +EYAP RVP +KD R GT+ +
Sbjct: 131 TASAIVPELSDRVRETSFQDSRNTFADPALLGPPTLEYAPYPRVPGGKVRKDARMGTIDQ 190
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DPE++ FLE ++ PV PS + +E + E+ + +TPL+ +++ K+A KA
Sbjct: 191 DPEFIAFLESLTNPVPK-PSTDDIVEPDKDEK-------ITITPLIQYLKDKKAGKA 239
>gi|195028336|ref|XP_001987032.1| GH21690 [Drosophila grimshawi]
gi|193903032|gb|EDW01899.1| GH21690 [Drosophila grimshawi]
Length = 516
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 39/178 (21%)
Query: 9 KVVVRNLPPAITQPAFTEQI------DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF-- 60
K+V+R+LPP +T+ F +Q+ D + + +W S ++ RAY+D
Sbjct: 21 KIVIRHLPPTMTEEEFLQQVEPLPENDAYYYCQADW--------SLGQEATCRAYIDMSM 72
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSK-KDGREGTLLKDPEYL 119
K +VL+F + F+G+VFV+ +GV++ IVEYAP Q K + +D + T+ K+P Y
Sbjct: 73 KDMSEVLQFRDRFDGYVFVDARGVEYIAIVEYAPFQCFLKNKGRSQDYKMNTIEKEPHYQ 132
Query: 120 EFLEFISKPVENLPSAEIQLERREAERAGAAK----------EALIVTPLMDFVRQKR 167
E+L+ ++ ER EA R K E + TPL+ ++ K+
Sbjct: 133 EYLQRMAD------------EREEASRLCDTKIDFTFDQKSDEKVKSTPLLQYLANKK 178
>gi|432094447|gb|ELK26013.1| Regulator of nonsense transcripts 3A [Myotis davidii]
Length = 665
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 91/176 (51%), Gaps = 32/176 (18%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
VV+R LPP++T+ EQ+ +++ F G S +RAY++F+ P+D+L F
Sbjct: 254 VVIRRLPPSLTKEQLEEQLHPLPA--HDYFEFFTGDLSLYPHLYSRAYINFRNPDDILLF 311
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKP 128
+ F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 312 RDRFDGYIFIDNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIDDDPEYKKFLETYCV- 370
Query: 129 VENLPSAEIQLERREAERAGAAKEALI--------------VTPLMDFVRQKRAAK 170
E E+ A E L+ TPL+++++ ++ K
Sbjct: 371 --------------EEEKTSANPETLLGDIEAKTRELIARRTTPLLEYIKNRKLEK 412
>gi|12620406|gb|AAG60690.1|AF318575_1 UPF3 [Homo sapiens]
Length = 452
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 44 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 101
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE
Sbjct: 102 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 161
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 162 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 204
>gi|302661624|ref|XP_003022478.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
gi|291186424|gb|EFE41860.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
Length = 659
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQ---KHQSCAR 55
KG R K+ VR LPP +TQ F + + G+ +W F++GK S K R
Sbjct: 90 KGNAPRLKLHVRRLPPGLTQAEFETTLGDCWKVGRGKVDWFLFKEGKVSTDPSKPSRPGR 149
Query: 56 AYLDFKK----PE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
AYL PE DV+ F + N+ + +EYAP RVP + D R
Sbjct: 150 AYLRVTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARV 209
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQ 165
GT+ +D E++ FLE ++ PV PS E E A E +TPL+ ++R+
Sbjct: 210 GTIDQDAEFIAFLESLTNPVTK-PSEE------ETTEAADKVEKPTITPLIQYLRE 258
>gi|67971906|dbj|BAE02295.1| unnamed protein product [Macaca fascicularis]
Length = 459
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 96/167 (57%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + + E L EA+ +E + TPL+++++ ++ K
Sbjct: 186 VEEEKTSTNPETLLGEMEAK----TRELIARRTTPLLEYIKNRKLEK 228
>gi|397524434|ref|XP_003832196.1| PREDICTED: regulator of nonsense transcripts 3A [Pan paniscus]
Length = 576
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 96/167 (57%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 168 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 225
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE +
Sbjct: 226 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYW 285
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + + E L EA+ +E + TPL+++++ ++ K
Sbjct: 286 VEEEKTSANPETLLGEMEAK----TRELIARRTTPLLEYIKNRKLEK 328
>gi|119176142|ref|XP_001240195.1| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 600
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTS---QKHQSCARAYLDF 60
R K++VR LPP +TQ F + + G+ +W +++ GK S K +RAYL
Sbjct: 42 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWFAYKPGKLSADPSKPSKPSRAYLRV 101
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
V E ++ F + + + +EYAP RVP +KD R GT+ +
Sbjct: 102 TASAIVPELSDRVRETSFQDSRNTFADPALLGPPTLEYAPYPRVPGGKVRKDARMGTIDQ 161
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
DPE++ FLE ++ PV PS + +E + E+ + +TPL+ +++ K+A KA
Sbjct: 162 DPEFIAFLESLTNPVPK-PSTDDIVEPDKDEK-------ITITPLIQYLKDKKAGKA 210
>gi|392578399|gb|EIW71527.1| hypothetical protein TREMEDRAFT_60453 [Tremella mesenterica DSM
1558]
Length = 423
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQ--KHQSCARAYLDFK 61
P RTK+V+R LPP + + F + W + +GK + + +RAY
Sbjct: 10 PPHRTKLVIRRLPPTLPEEIFWTSVSQWVDESCVWRRYVKGKAADGGERARYSRAYCLLP 69
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
+ V+ F FNGHV+ ++ G +++ +VE AP Q+ P + K D R+GT+ DP+Y+ F
Sbjct: 70 DEQAVI-FRTDFNGHVYRSKAGEEYQALVEPAPLQKTPNKLKKIDVRQGTVETDPDYISF 128
Query: 122 LEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGK 181
+ +S E P E TP++D +R+K+A K+
Sbjct: 129 INALSGSPEPPP---------EVTAVAPVPPPTETTPIIDAIREKKALKS---------- 169
Query: 182 LSRRASGSSTGSPASGSSKRGSDKKKASTTMYVLRDTAKNSSGKDKSTYILV 233
L++ +T + SSK D+ K V T K +SG+ S +LV
Sbjct: 170 LTQFKETYTTFT----SSKASEDRAKKLALASVTAATEKRTSGQVDSGSVLV 217
>gi|302499969|ref|XP_003011979.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
gi|291175534|gb|EFE31339.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
Length = 604
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFG----GRYNWVSFRQGKTSQ---KHQSCA 54
KG R K+ VR LPP +TQ F E G F G+ +W F++GK S K
Sbjct: 36 KGNAPRLKLHVRRLPPGLTQAEF-ETTLGDFWKVGRGKVDWFLFKEGKVSTDPSKPSRPG 94
Query: 55 RAYLDFKK----PE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
RAYL PE DV+ F + N+ + +EYAP RVP + D R
Sbjct: 95 RAYLRVTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDAR 154
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQ 165
GT+ +D E++ FLE ++ PV PS E E A E +TPL+ ++R+
Sbjct: 155 VGTIDQDAEFIAFLESLTNPVTK-PSEE------ETTEAADKVEKPTITPLIQYLRE 204
>gi|66267353|gb|AAH95761.1| Upf3a protein [Danio rerio]
Length = 201
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++++ E + +++ F S +RAY++FK PED++
Sbjct: 43 SKVVIRRLPPSLSKDQLQEHLSPL--PSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 100
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q+V K+ KK + GT+ +DPEY FLE S
Sbjct: 101 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 160
Query: 127 KPVE-NLPSAEIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E ++ + E L EA+ R AK TPL++++++K+
Sbjct: 161 CDEEKSMANPETLLGEIEAKTRELIAKRT---TPLLEYIKKKK 200
>gi|326483654|gb|EGE07664.1| nonsense-mediated mRNA decay protein [Trichophyton equinum CBS
127.97]
Length = 508
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFG----GRYNWVSFRQGKTS---QKHQSCA 54
KG R K+ VR LPP +TQ F E + G + G+ +W F++GK S K
Sbjct: 38 KGNAPRLKLHVRRLPPGLTQAEF-ETVLGDYWKVGRGKVDWFLFKEGKVSTDPSKPSRPG 96
Query: 55 RAYLDFKK----PE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
RAYL PE DV+ F + N+ + +EYAP RVP + D R
Sbjct: 97 RAYLRVTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDAR 156
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQ 165
GT+ +D E++ FLE ++ PV PS E +E A E +TPL+ ++R+
Sbjct: 157 VGTIDQDAEFIAFLESLTNPVTK-PSEEETVE------AADKVEKPTITPLIQYLRE 206
>gi|194222085|ref|XP_001499122.2| PREDICTED: regulator of nonsense transcripts 3A-like [Equus
caballus]
Length = 432
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 32/182 (17%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKP 63
P+ + VV+R LPP++T+ EQ+ +++ F S +RAY++F+ P
Sbjct: 20 PICKGSVVIRRLPPSLTKEQLEEQLHPLPA--HDYFEFFTADLSLFPHLYSRAYINFRNP 77
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFL 122
ED+L F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ D EY +FL
Sbjct: 78 EDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDAEYKKFL 137
Query: 123 EFISKPVENLPSAEIQLERREAERAGAAKEALI--------------VTPLMDFVRQKRA 168
E E E+A A+ E L+ TPL+++++ ++
Sbjct: 138 EAYCV---------------EEEKAAASPETLLGDIEAKTRELIARRTTPLLEYIKNRKL 182
Query: 169 AK 170
K
Sbjct: 183 EK 184
>gi|19114617|ref|NP_593705.1| hypothetical protein SPAC13G7.03 [Schizosaccharomyces pombe 972h-]
gi|1723449|sp|Q10267.1|UPF3_SCHPO RecName: Full=Nonsense-mediated mRNA decay protein 3; AltName:
Full=Up-frameshift suppressor 3
gi|1204170|emb|CAA93591.1| up-frameshift suppressor 3 family protein (predicted)
[Schizosaccharomyces pombe]
Length = 278
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTS--QKHQSCARAYLDFKKPED 65
KV+V NLPP + + F + I+ +F W F +GK + + + + AYL F+
Sbjct: 12 CKVLVFNLPPTLPEQVFLQSIN-SFLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATA 70
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
V EF + GH F+++K ++ IV AP Q++P K D EG+L +DP++ EF
Sbjct: 71 VQEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF 126
>gi|170095539|ref|XP_001878990.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646294|gb|EDR10540.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 520
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQ---KHQSCARAYLDF 60
++R K VVR LPP + + F + + +W F GK+ + K +RAY+ F
Sbjct: 36 IERLKTVVRRLPPNLPEDVFWQSVQPWVTEESVSWKVFYAGKSRKRLSKENIPSRAYIAF 95
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
K E + +F+ ++GH+F ++ G + IVE+AP Q+VP + K D R T+ KD +Y+
Sbjct: 96 KSEEKLAQFSREYDGHLFRDKAGNESYAIVEFAPYQKVPTEKRKPDARNATIEKDEDYIS 155
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSN 179
F++ ++ P LE A A + TPL++ ++ +++A +L N
Sbjct: 156 FIDSLNASANAEPPT---LEALIASTQQAPQPK--TTPLLEALKAEKSANKDKEAILRN 209
>gi|296215016|ref|XP_002753967.1| PREDICTED: regulator of nonsense transcripts 3A-like [Callithrix
jacchus]
Length = 497
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 95 QVVIRRLPPGLTKEQLEEQLHPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 152
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FIS 126
F + F+G+VF++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 153 FRDRFDGYVFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYCV 212
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + EI L EA+ A A + L+++++ ++ K
Sbjct: 213 EEEKTSTNPEILLGEMEAKTKRA--HARRINTLLEYIKNRKLEK 254
>gi|21313164|ref|NP_080200.1| UPF3 regulator of nonsense transcripts homolog A [Mus musculus]
gi|74211416|dbj|BAE26455.1| unnamed protein product [Mus musculus]
gi|109733918|gb|AAI16989.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Mus
musculus]
gi|111600742|gb|AAI19036.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Mus
musculus]
gi|148690220|gb|EDL22167.1| mCG3697, isoform CRA_c [Mus musculus]
Length = 422
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 93/167 (55%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPA--HDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F+ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE S
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPVENL-PSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
E S E L EA+ +E L TPL+++++ ++ K
Sbjct: 184 LEEEKTSASPETLLGEIEAK----TRELLARRTTPLLEYIKNRKLEK 226
>gi|165971526|gb|AAI58354.1| upf3b protein [Xenopus (Silurana) tropicalis]
Length = 231
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 96/163 (58%), Gaps = 8/163 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ E + +++ F +S +RAY++FK +D++
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPL--PDHDYFEFFSNDSSLFPHMFSRAYINFKSQDDIV 94
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ +G ++ IVE+AP Q+V K+ SKK + GT+ DPEY +FL+ +
Sbjct: 95 LFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYKKFLDSYT 154
Query: 127 KPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQKR 167
E L S E LE EA+ + AK+ TPL+ F++ ++
Sbjct: 155 LDEEKLTSTPETLLEEIEAKNKEMIAKKT---TPLLSFLKNRQ 194
>gi|301089485|ref|XP_002895038.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103692|gb|EEY61744.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 453
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 10/155 (6%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGR----YNWVSFRQGKTSQKHQSCARAYLDFKK-P 63
K+VVRN+PP ++ E + A G + + +V RQ +++ + + AR Y+D KK P
Sbjct: 84 KLVVRNIPPTASEQEARELMQ-AHGVKNELIWRFVPGRQ-RSNNRPPTPARLYVDMKKEP 141
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTI---VEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
E + +G F + + T VE+AP Q++P++ +KD + GT+ DPEYL
Sbjct: 142 ERARKLIASLHGQFFYPDTKDKEGTKPLDVEFAPFQKIPREKQRKDVKVGTIDCDPEYLA 201
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALI 155
FLE ++KP + LPSAE ++ E E AL+
Sbjct: 202 FLEELAKPKDKLPSAEALVDMAEGETLEKPVAALV 236
>gi|335310531|ref|XP_003362076.1| PREDICTED: regulator of nonsense transcripts 3A-like, partial [Sus
scrofa]
Length = 447
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 32/178 (17%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVVVR LPP++T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 116 SKVVVRRLPPSLTREQLEEQLQPL--PAHDYFEFFTADLSLYPHLYSRAYINFRNPDDIL 173
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 174 LFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYKKFLETYC 233
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALI--------------VTPLMDFVRQKRAAK 170
E E+A A E L+ TPL+++++ ++ K
Sbjct: 234 V---------------EEEKASANPETLLGDVEAKTRELIARRTTPLLEYIKNRKLEK 276
>gi|58865890|ref|NP_001012159.1| regulator of nonsense transcripts 3A [Rattus norvegicus]
gi|56971889|gb|AAH88463.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Rattus
norvegicus]
gi|149057670|gb|EDM08913.1| rCG43312 [Rattus norvegicus]
Length = 405
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 93/167 (55%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPA--HDYFEVVAADLSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F+ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE S
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPVENL-PSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
E S E L EA+ +E L TPL+++++ ++ K
Sbjct: 184 LEEEKTSASPETLLGEIEAK----TRELLARRTTPLLEYIKNRKLEK 226
>gi|443925907|gb|ELU44664.1| smg-4/UPF3 family domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 442
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 26/146 (17%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQG--KTSQKHQSCARAYLDFKKPE 64
+ KVV+R LPP + + F + + WV+ K + +RAY++F PE
Sbjct: 156 KLKVVIRRLPPNLPENIFWQSVA-------QWVTDESSSWKLYVPENTPSRAYVEFVTPE 208
Query: 65 DVLEFAEFFNGHVFVNEKG-----VQFKTI------------VEYAPSQRVPKQWSKKDG 107
V+ F+ +NGHVF +++G V +TI VEYAP Q+VP + K D
Sbjct: 209 AVVAFSRDYNGHVFRDKQGEFIPNVNTRTIEHSSLGNESAAVVEYAPYQKVPHEKRKADA 268
Query: 108 REGTLLKDPEYLEFLEFISKPVENLP 133
+ GT+ D +++ FLE ++KP E P
Sbjct: 269 KIGTIETDEDFISFLEALNKPAEPTP 294
>gi|332264282|ref|XP_003281173.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Nomascus
leucogenys]
Length = 477
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 69 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEIFAADLSLYPHLYSRAYINFRNPDDIL 126
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE
Sbjct: 127 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYC 186
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E SA + E E A TPL+++++ ++ K
Sbjct: 187 VEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 229
>gi|342882704|gb|EGU83304.1| hypothetical protein FOXB_06155 [Fusarium oxysporum Fo5176]
Length = 663
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 18/168 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTS---QKHQSCARAYLDFKK 62
K+V+R LPP +TQ F + + G+ +W SF GK S K RAY+ K
Sbjct: 77 KLVIRRLPPGMTQAEFVSILGSEWELGKGKVDWFSFAGGKISTDPSKPSRPGRAYVHVMK 136
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTI-------VEYAPSQRVPKQWSKKDGREGTLLKD 115
+D+L ++ V+ + K F + VE+A ++VP + D R+GT+ +D
Sbjct: 137 KDDILPLSDAVRTAVWEDAK-ASFNSPSLIGPPSVEFAIYKKVPSNKKRTDARQGTIDQD 195
Query: 116 PEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
PE++ FLE ++ P P E +E E + G + + TPL++++
Sbjct: 196 PEFMAFLEELANPA---PPKET-VEGEEGDDLGKVETKVTTTPLIEYL 239
>gi|239612565|gb|EEQ89552.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ER-3]
Length = 571
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K+++R LPP +T F + + G+ +W +++GK S+ K R YL
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRV 96
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLK 114
V E +E F + + +V EYAP RVP ++DGR+GT+
Sbjct: 97 TSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDL 156
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
D +++ FLE ++ PV P+ +I E + E+ +TPL+ F++ K+A K
Sbjct: 157 DSDFIAFLESLTNPVTK-PAMDIGAEDTKEEKP-------TITPLIQFLKDKKANK 204
>gi|261203062|ref|XP_002628745.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
gi|239590842|gb|EEQ73423.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
Length = 571
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K+++R LPP +T F + + G+ +W +++GK S+ K R YL
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRV 96
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLK 114
V E +E F + + +V EYAP RVP ++DGR+GT+
Sbjct: 97 TSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDL 156
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
D +++ FLE ++ PV P+ +I E + E+ +TPL+ F++ K+A K
Sbjct: 157 DSDFIAFLESLTNPVTK-PAMDIGAEDTKEEKP-------TITPLIQFLKDKKANK 204
>gi|327355537|gb|EGE84394.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 571
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 20/176 (11%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K+++R LPP +T F + + G+ +W +++GK S+ K R YL
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPAKPSRPTRVYLRV 96
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLK 114
V E +E F + + +V EYAP RVP ++DGR+GT+
Sbjct: 97 TSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTIDL 156
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
D +++ FLE ++ PV P+ +I E + E+ +TPL+ F++ K+A K
Sbjct: 157 DSDFIAFLESLTNPVTK-PAMDIGAEDTKEEKP-------TITPLIQFLKDKKANK 204
>gi|327309448|ref|XP_003239415.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
gi|326459671|gb|EGD85124.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
Length = 604
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 19/174 (10%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTS---QKHQSCAR 55
KG + R K+ VR LPP +TQ F + + GR +W F+ GK S K R
Sbjct: 37 KGNVPRLKLHVRRLPPGLTQAEFETTLGDYWKVGRGRVDWFLFKAGKVSTDPSKPSRPGR 96
Query: 56 AYLDFKK----PE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
AYL PE DV+ F + N+ + +EYAP RVP + D R
Sbjct: 97 AYLRVTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARV 156
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
GT+ +D E++ FLE ++ PV PS E E A E +TPL+ ++
Sbjct: 157 GTIDQDAEFISFLESLTNPVTK-PSEE------ETTEAADRVEKQTITPLIQYL 203
>gi|355754831|gb|EHH58732.1| Nonsense mRNA reducing factor 3A, partial [Macaca fascicularis]
Length = 408
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 95/166 (57%), Gaps = 10/166 (6%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP +T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 1 QVVIRRLPPGLTKEQLEQQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 58
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FIS 126
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 59 FRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYCV 118
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
+ + + E L EA+ +E + TPL+++++ ++ K
Sbjct: 119 EEEKTSTNPETLLGEMEAK----TRELIARRTTPLLEYIKNRKLEK 160
>gi|301616932|ref|XP_002937909.1| PREDICTED: regulator of nonsense transcripts 3A-like [Xenopus
(Silurana) tropicalis]
Length = 464
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 95/167 (56%), Gaps = 10/167 (5%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP + + EQ+ +++ F S +RAY++F+ PED+L
Sbjct: 49 SKVVIRRLPPNLNKEQLEEQLHPLPA--HDYFEFCTADPSLFPHLFSRAYINFRNPEDIL 106
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG ++ +VE+AP Q++ K+ KK + G++ +D EY +FLE +
Sbjct: 107 LFRDRFDGYIFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIAEDLEYKKFLENYC 166
Query: 126 SKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAAK 170
++ + + E L EA+ KE + TPL++F++ ++ K
Sbjct: 167 AEEEKVYANPETLLGEIEAK----TKELIARRTTPLLEFIKNRKLEK 209
>gi|320162867|gb|EFW39766.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 465
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
K+V+R LPP + + F E+ F +++ G+ S + A Y+ K PE + +
Sbjct: 24 KLVIRRLPPLLDEAVFREKHLAGFEASISYLYLVPGRLSLGPNAFATVYITLKTPEALAQ 83
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK--DGREGTLLKDPEYLEFLEFIS 126
A+ NGHVF + +G I E AP QR P ++ D + GTL D +YL F+E ++
Sbjct: 84 LAQQMNGHVFRDSRGTTHTAIAELAPFQRTPNPSRRRRPDPKMGTLSTDKDYLAFVEALN 143
>gi|355727800|gb|AES09314.1| UPF3 regulator of nonsense transcripts-like protein A [Mustela
putorius furo]
Length = 396
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEAQLQPLPA--HDYFEFFTADLSLYPHLYSRAYINFRDPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F++ G+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 126 LFRDRFDGYIFIDSTGLEYPAVVEFAPFQKIAKKKIKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E P+A + + E A TPL++++R ++ K
Sbjct: 186 V-EEEKPNANPETLLGDIEAKTRELIARRTTPLLEYIRNRKLEK 228
>gi|408391884|gb|EKJ71250.1| hypothetical protein FPSE_08489 [Fusarium pseudograminearum CS3096]
Length = 670
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 18/173 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTS---QKHQSCARAYLDFKK 62
K+ +R LPP +T+ F + + G+ +W F +GK S K RAY+ +
Sbjct: 77 KLTIRRLPPGMTEAEFASILGSEWEVGKGKVDWFCFAEGKISTDPSKPSRPGRAYVHVMR 136
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKT-------IVEYAPSQRVPKQWSKKDGREGTLLKD 115
+D+L +E V+ + K F + +++ A ++VP + D R+GT+ +D
Sbjct: 137 KDDILPLSEAVRNAVWEDAK-ASFNSPSLIGPPVLDIAIYKKVPSAKKRTDARQGTIDQD 195
Query: 116 PEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
P+++ FLE ++ P P E E E + G ++ + TPL++++++K+A
Sbjct: 196 PDFMAFLEELANPT---PPKEPD-EGEEGDDLGKSENKVTTTPLIEYLKEKKA 244
>gi|380791687|gb|AFE67719.1| regulator of nonsense transcripts 3A isoform hUpf3p, partial
[Macaca mulatta]
Length = 266
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE-FI 125
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE +
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLETYC 185
Query: 126 SKPVENLPSAEIQLERREAE-RAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + E L EA+ R A+ TPL+++++ ++ K
Sbjct: 186 VEEEKTSANPETLLGEMEAKTRELIARR---TTPLLEYIKNRKLEK 228
>gi|212539920|ref|XP_002150115.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
gi|210067414|gb|EEA21506.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
Length = 570
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 7 RTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K+++R LPP +T+ F + D G G+ +W F+ GK S+ K ARAY+
Sbjct: 33 RLKLIIRRLPPGLTRAEFETGLGDDWKIGRGKIDWFQFKPGKISKDPAKPSRPARAYVHV 92
Query: 61 KKPEDVLEFAE------FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
E + +E F + N+ + VE+AP RVP S+KDGR+GT+ +
Sbjct: 93 LSEEIISSLSEKVRATSFHDARNTSNDPVLLGPPSVEFAPFARVPGSRSRKDGRQGTIDQ 152
Query: 115 DPEYLEFLEFISKPV 129
DPE++ FLE ++ P+
Sbjct: 153 DPEFVAFLESLTNPI 167
>gi|119629654|gb|EAX09249.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_c [Homo sapiens]
gi|119629655|gb|EAX09250.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_c [Homo sapiens]
Length = 250
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE 123
F + F+G++F++ KG+++ +VE+AP Q++ K+ +K + G++ DPEY +FLE
Sbjct: 126 LFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLE 182
>gi|327268038|ref|XP_003218805.1| PREDICTED: regulator of nonsense transcripts 3A-like [Anolis
carolinensis]
Length = 476
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 11 VVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFA 70
++R LPP+ T+ EQ+ +++ F S +RAY++F+ P+D+L F
Sbjct: 57 LIRRLPPSFTKEQLEEQLHPLPA--HDYFEFCTSDPSLYPHLYSRAYINFRNPDDILLFR 114
Query: 71 EFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKPV 129
+ F+G VF++ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 115 DRFDGFVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCAEE 174
Query: 130 ENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
E + SA + E E A TPL+++++ ++ K
Sbjct: 175 EKI-SANPETLLGEIEAKTRELIARRTTPLLEYIKNRKLEK 214
>gi|12854641|dbj|BAB30093.1| unnamed protein product [Mus musculus]
Length = 248
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 32/178 (17%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPA--HDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G++F+ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE S
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLESYS 183
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALI--------------VTPLMDFVRQKRAAK 170
E E+ A+ E L+ TPL+++++ ++ K
Sbjct: 184 ---------------LEEEKTSASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEK 226
>gi|46109162|ref|XP_381639.1| hypothetical protein FG01463.1 [Gibberella zeae PH-1]
Length = 641
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 86/173 (49%), Gaps = 18/173 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTS---QKHQSCARAYLDFKK 62
K+ +R LPP +T+ F + + G+ +W F +GK S K RAY+ +
Sbjct: 50 KLTIRRLPPGMTEAEFASILGSEWEVGKGKVDWFCFAEGKISTDPSKPSRPGRAYVHVMR 109
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPS-------QRVPKQWSKKDGREGTLLKD 115
+D+L +E V+ + K F + P ++VP + D R+GT+ +D
Sbjct: 110 KDDILPLSEAVRNAVWEDAK-ASFNSPSLIGPPGLDIAIYKKVPSAKKRTDARQGTIDQD 168
Query: 116 PEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
P+++ FLE ++ P P E +E E + G ++ + TPL++++++K+A
Sbjct: 169 PDFMAFLEELANPT---PPKET-VEGEEGDDFGKSENKVTTTPLIEYLKEKKA 217
>gi|406702092|gb|EKD05159.1| hypothetical protein A1Q2_00545 [Trichosporon asahii var. asahii
CBS 8904]
Length = 375
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQID----GAFGGRYNWVSFRQGKTSQKHQSCARAY 57
K P R K+VVR LPP + + F ++ GA RY V R G H +RAY
Sbjct: 4 KAPAPRLKLVVRRLPPTLPEATFWSVVEPWTSGALWKRY--VQGRPGDNFGAHPVHSRAY 61
Query: 58 LDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW-SKKDGREGTLLKDP 116
+ ++ F F+GH+F ++ G +F+ +VE+AP ++ P + KKD ++GT+ D
Sbjct: 62 VLMPDVASIVAFHTAFDGHLFRSKTGQEFQAVVEFAPVEKTPYRVKEKKDAKQGTI--DN 119
Query: 117 EYLEFL---EFISKPVE 130
+YL FL + + +PVE
Sbjct: 120 DYLSFLAARDSVPEPVE 136
>gi|401888523|gb|EJT52479.1| hypothetical protein A1Q1_03995 [Trichosporon asahii var. asahii
CBS 2479]
Length = 374
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 12/137 (8%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQID----GAFGGRYNWVSFRQGKTSQKHQSCARAY 57
K P R K+VVR LPP + + F ++ GA RY V R G H +RAY
Sbjct: 4 KAPAPRLKLVVRRLPPTLPEATFWSVVEPWTSGALWKRY--VQGRPGDNFGAHPVHSRAY 61
Query: 58 LDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW-SKKDGREGTLLKDP 116
+ ++ F F+GH+F ++ G +F+ +VE+AP ++ P + KKD ++GT+ D
Sbjct: 62 VLMPDVASIVAFHTAFDGHLFRSKTGQEFQAVVEFAPVEKTPYRVKEKKDAKQGTI--DN 119
Query: 117 EYLEFL---EFISKPVE 130
+YL FL + + +PVE
Sbjct: 120 DYLSFLAARDSVPEPVE 136
>gi|134055711|emb|CAK44084.1| unnamed protein product [Aspergillus niger]
Length = 565
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQKHQSCARAYLDFKKP 63
R K++VR LPP +TQ F + + GG+ +W ++ GK S+ + +
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDDHTIPLS------- 91
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
+ + F + + + +E+AP ++ S+KD R+GT+ +DPE++ FLE
Sbjct: 92 -NKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTIDQDPEFIAFLE 150
Query: 124 FISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
+++P+ E + + KE + VTPL+ ++R+K+A
Sbjct: 151 SLTQPLAKPAPVESGADGED------KKETVTVTPLVQYIREKKA 189
>gi|358397022|gb|EHK46397.1| hypothetical protein TRIATDRAFT_43507 [Trichoderma atroviride IMI
206040]
Length = 626
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 18/182 (9%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCA 54
K P + KV++R LPP +T+ F + + A G G+ +W S+ GK K +
Sbjct: 42 TKTPHEGEKVIIRRLPPGLTEAEFLSILGSEWAVGNGKVDWSSYAPGKVCNEISKPSRPS 101
Query: 55 RAYL-----DFKKP-EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
RAYL D+ P D++ A + + N + +E + ++VP + D R
Sbjct: 102 RAYLHVMRKDYIMPLSDIVRNAAWEDARSTFNSPSLIGPPALEISIYKKVPGNKKRVDAR 161
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
+GT+ +DPE++ FLE ++ PV+ EI + E E A K + TPL++++++K+A
Sbjct: 162 QGTIDQDPEFMAFLEGLANPVQ---PKEI-TDNEEVEDAAETK--VTTTPLIEYLKEKKA 215
Query: 169 AK 170
K
Sbjct: 216 NK 217
>gi|390348040|ref|XP_791537.3| PREDICTED: regulator of nonsense transcripts 3B-like
[Strongylocentrotus purpuratus]
Length = 128
Score = 74.7 bits (182), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPPA+T+ F E +D Y + + + S + +RAY++F K ED++
Sbjct: 16 TKVVIRCLPPALTEEEFREIVDPFPDNEYFY--YVKADRSLGEHAYSRAYINFMKEEDII 73
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTL 112
F + ++GH F N +G+ + +VE+AP Q+VPK KK D R T+
Sbjct: 74 PFRDTWDGHEFDNGQGLVYPAVVEFAPYQKVPKVIGKKVDARTATI 119
>gi|330931624|ref|XP_003303476.1| hypothetical protein PTT_15697 [Pyrenophora teres f. teres 0-1]
gi|311320521|gb|EFQ88437.1| hypothetical protein PTT_15697 [Pyrenophora teres f. teres 0-1]
Length = 623
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 22/174 (12%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++ R LPP +T+ F E + + G+ +W+++R+GK S K ARAY+
Sbjct: 34 RLKLICRRLPPGLTKAEFIEALGDEWKLGAGKIDWINYRKGKISTDAAKPSKPARAYIHV 93
Query: 61 KKPEDVLEFAEFFNGHVFVNE-KGVQFKTIV-----EYAPSQRVPKQWSKKDGREGTLLK 114
K E V + F + K Q +V EY+P ++P + D R+GT+ +
Sbjct: 94 TKQEHVKVLGDHVRTVTFHDATKSWQDPVLVGPPTLEYSPYPKMPGGRRRNDNRQGTIDQ 153
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
D E+ +FLE ++ P+ +AE + + KE + TPL++ +R+K+A
Sbjct: 154 DQEFKDFLESLTNPITKPAAAENEGQ----------KEKVKTTPLIEALREKKA 197
>gi|240277371|gb|EER40879.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H143]
Length = 452
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
KV++R LPP +T F + + G+ +W F++GK + K RAYL
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKIDWFRFKEGKVFKDPAKPSRPTRAYLRVTS 98
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLKDP 116
V E +E F + + I+ EYAP RVP +KDGR+GT+ D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTGRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+++ FLE ++ PV A+I + + E+ +TPL+ F+++KRA K
Sbjct: 159 DFITFLESLTNPVTKS-VADIAADDTKEEKP-------TITPLIQFLKEKRANK 204
>gi|154270398|ref|XP_001536054.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409981|gb|EDN05369.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 542
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
KV++R LPP +T F + + G+ +W F++GK + K RAYL
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKVDWFRFKEGKDFKDPAKPSRPTRAYLRVTS 98
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLKDP 116
V E +E F + + I+ EYAP RVP +KDGR+GT+ D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTSRDPILIGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+++ FLE ++ PV A+I + + E+ +TPL+ F+++KRA K
Sbjct: 159 DFITFLESLTNPVTKS-VADIAADDTKEEKPA-------ITPLIQFLKEKRANK 204
>gi|401411995|ref|XP_003885445.1| hypothetical protein NCLIV_058400 [Neospora caninum Liverpool]
gi|325119864|emb|CBZ55417.1| hypothetical protein NCLIV_058400 [Neospora caninum Liverpool]
Length = 581
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARA--YLDFKKPE 64
+TKV VR LPP++ + + + + W F G + +S + Y++F E
Sbjct: 270 KTKVAVRLLPPSVREEELFALVAESVQEKIAWTRFVPGCQHKPGESSRNSTWYVNFAAEE 329
Query: 65 DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEF 124
D EF + F+G FV+E+ FK + AP Q+VP++ + D REGTL D YL+FL
Sbjct: 330 DAEEFIKSFHGKAFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGTLANDSLYLDFLRA 388
Query: 125 IS 126
++
Sbjct: 389 LN 390
>gi|225556833|gb|EEH05120.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 579
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 20/174 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKT---SQKHQSCARAYLDFKK 62
KV++R LPP +T F + + G+ +W F++GK K RAYL
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKVDWFRFKEGKVFKDPAKPSRPTRAYLRVTS 98
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLKDP 116
V E +E F + + I+ EYAP RVP +KDGR+GT+ D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTSRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+++ FLE ++ PV A+I + E+ +TPL+ F+++KRA K
Sbjct: 159 DFITFLESLTNPVTKS-VADIAADDTREEKP-------TITPLIQFLKEKRANK 204
>gi|116200009|ref|XP_001225816.1| hypothetical protein CHGG_08160 [Chaetomium globosum CBS 148.51]
gi|88179439|gb|EAQ86907.1| hypothetical protein CHGG_08160 [Chaetomium globosum CBS 148.51]
Length = 654
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQ---KHQSCA 54
K P KVVVR LPPA+T+ F + + G+ +W S+ GK SQ K +
Sbjct: 29 TKAPAQGEKVVVRRLPPAMTEEEFITILGEEWKVGRGKVDWFSYWPGKVSQHPSKPSQPS 88
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
RAY+ + ++++ + + N+ + VE+A ++ P + + DGR
Sbjct: 89 RAYIHVTRRDELVALLQHVQSATWEDAKETYNDPALVSPPTVEFATYKKTPGEKKRVDGR 148
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAG---AAKEALIVTPLMDFVRQ 165
+GT+ +DPE++ FLE ++ P + Q E +E ++ E TPL++++++
Sbjct: 149 QGTIDQDPEFMAFLEALANP-------DAQKEAQEGDQGVEELGKTEKTTTTPLVEYLKE 201
>gi|325093450|gb|EGC46760.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H88]
Length = 579
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKT---SQKHQSCARAYLDFKK 62
KV++R LPP +T F + + G+ +W F++GK K RAYL
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKIDWFRFKEGKVFKDPAKPSRPTRAYLRVTS 98
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLKDP 116
V E +E F + + I+ EYAP RVP +KDGR+GT+ D
Sbjct: 99 IPLVDELSEKVRVSAFQDGRNTGRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLDS 158
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+++ FLE ++ PV A+I + + E+ +TPL+ F+++KRA K
Sbjct: 159 DFITFLESLTNPVTKS-VADIAADDTKEEKP-------TITPLIQFLKEKRANK 204
>gi|28436870|gb|AAH47049.1| Upf3b protein, partial [Mus musculus]
Length = 388
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTL 112
ARAY++FK ED+L F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+
Sbjct: 11 ARAYINFKNQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTI 70
Query: 113 LKDPEYLEFLEFISKPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
DPEY +FLE + E + S E LE EA+ R AK TPL+ F++ K
Sbjct: 71 EDDPEYRKFLESYATDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNK 123
>gi|322710626|gb|EFZ02200.1| nonsense-mediated mRNA decay protein Upf3, putative [Metarhizium
anisopliae ARSEF 23]
Length = 664
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 88/173 (50%), Gaps = 18/173 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTS---QKHQSCARAYLDFKK 62
K+V+R LPP +T F + + G+ +W S+ GK S K RAY+ +
Sbjct: 89 KLVIRRLPPGMTMEEFISILGPEWEMSKGKVDWFSYVPGKISIDPSKPSRPGRAYVHLVR 148
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKT-------IVEYAPSQRVPKQWSKKDGREGTLLKD 115
+D++ +E + + K F ++E++ ++VP + D R+GT+ +D
Sbjct: 149 KDDIMPLSEVVRNATWEDAKST-FTNPSLIGPPVLEFSIYKKVPGTKKRTDTRQGTIDQD 207
Query: 116 PEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
PE++ FLE ++ P S +++ +A+ + + + TPL++F+++K+A
Sbjct: 208 PEFMAFLEGLANPAPMRESIDVE----DADESAKVEVKVTTTPLVEFLKEKKA 256
>gi|148697044|gb|EDL28991.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_b [Mus musculus]
Length = 386
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ-RVPKQWSKKDGREGTL 112
ARAY++FK ED+L F + F+G+VF++ KG ++ IVE+AP Q K+ K+D + GT+
Sbjct: 9 ARAYINFKNQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTI 68
Query: 113 LKDPEYLEFLEFISKPVENLPSA-EIQLERREAE-RAGAAKEALIVTPLMDFVRQK 166
DPEY +FLE + E + S E LE EA+ R AK TPL+ F++ K
Sbjct: 69 EDDPEYRKFLESYATDNEKMTSTPETLLEEIEAKNRELIAKR---TTPLLSFLKNK 121
>gi|392590363|gb|EIW79692.1| hypothetical protein CONPUDRAFT_144892 [Coniophora puteana
RWD-64-598 SS2]
Length = 553
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQ---KHQSCARAYLDFK 61
+R K VVR LP + + F + + W F GK + K +RAY+ FK
Sbjct: 47 ERMKAVVRRLPANLPEDIFWQSVQAWVTPETVAWRKFYAGKIHKRPNKESMPSRAYIAFK 106
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
+ V F+ ++GHVF ++ G + + +VE+AP Q+VP + K D R GT+ KD +++ F
Sbjct: 107 SDDLVATFSREYDGHVFRDKAGNESQAVVEFAPFQKVPAEKKKADPRAGTIEKDEDFISF 166
Query: 122 LEFI 125
L+ +
Sbjct: 167 LKTL 170
>gi|378732821|gb|EHY59280.1| hypothetical protein HMPREF1120_07272 [Exophiala dermatitidis
NIH/UT8656]
Length = 767
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 23/176 (13%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCAR 55
+ P R ++V+R LPP +T+ F + D G G+ W +F+ GK S+ K +R
Sbjct: 34 RAPAPRLRLVIRRLPPGLTESEFWAALGDDWKVGAGKAEWAAFKSGKISKDLAKPSRPSR 93
Query: 56 AYLDFKKPE--DVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDG 107
AY+ ++ DVL A G F + K + E+AP ++P ++ DG
Sbjct: 94 AYIKVREQSLLDVLSAA--VRGASFQDAKNTSKDPCLLGPPSLEFAPYNKIPSGRARNDG 151
Query: 108 REGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
R+GT+ +D E+++FL+ +++P+ S LE EA+ E + +TPL+ ++
Sbjct: 152 RQGTIDQDQEFIDFLQSLTQPITK--STTSVLEPGEAK-----PEKVAITPLVQYI 200
>gi|156034344|ref|XP_001585591.1| hypothetical protein SS1G_13475 [Sclerotinia sclerotiorum 1980]
gi|154698878|gb|EDN98616.1| hypothetical protein SS1G_13475 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 619
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 18/177 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
+ K++VR L P +T+ F + + G+ +W ++ GK S+ K +RAYL
Sbjct: 38 KLKLIVRRLAPGLTEVEFFSVLGDEWKVGQGKVDWFQYKLGKDSKDPSKPSRPSRAYLHL 97
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTI------VEYAPSQRVPKQWSKK-DGREGTLL 113
+ +L F+E F + K + VE+AP RVP ++ D R GT+
Sbjct: 98 TSGDHLLPFSEVVRKSSFEDAKNTYTDSCLIGPPSVEFAPYSRVPAGLKRRTDARAGTID 157
Query: 114 KDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+DPE++ FLE ++ PV + EI + + E + VTPL+ F++ K+A K
Sbjct: 158 QDPEFMAFLEGLANPVT---TKEIGADGEDPPTGKP--EKVTVTPLVQFLKDKKANK 209
>gi|164663327|ref|XP_001732785.1| hypothetical protein MGL_0560 [Malassezia globosa CBS 7966]
gi|159106688|gb|EDP45571.1| hypothetical protein MGL_0560 [Malassezia globosa CBS 7966]
Length = 373
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 18/173 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS----------FRQGKTSQKH---QSCAR 55
KVVVR+LPP +T+ F E + + + V+ F QGK S++ + +
Sbjct: 13 KVVVRDLPPHLTENVFWEAVSPWVRLKADPVTNEPRTASRTAFVQGKRSEQASEVDTLSV 72
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLK 114
AY++F + VL+F + F GH+F + KG + V+ A Q + K G GT+ +
Sbjct: 73 AYINFSDFKYVLDFVQNFQGHIFRDSKGQNYHAFVDNALFQSYMRWAPDKYGESTGTIQQ 132
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
EY +F+ F+ P P+ L E + + +A I TPL++FVR+++
Sbjct: 133 TQEYKDFVAFLEAPSTLAPAPAPGLSASETD----SDKASITTPLVEFVRKQK 181
>gi|226469914|emb|CAX70238.1| putative hUPF3A [Schistosoma japonicum]
gi|226488835|emb|CAX74767.1| putative hUPF3A [Schistosoma japonicum]
Length = 536
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 32/181 (17%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
K+VVR LPP + F + ++ + + F S RAY+ F + + +
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPL--PSHTYFRFCDADDSLGALGLTRAYIAFSDIDSLFD 65
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQ-----RVPKQWSKK---DGREGTLLKDPEYLE 120
F E F+G++F++ +G + +VE+A Q +VP +K+ D ++G+LL D EY+E
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDSEYIE 125
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEAL---------------IVTPLMDFVRQ 165
F V+++ SAE+ E E+E +A E++ IVTPL+ ++
Sbjct: 126 F-------VKSMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLTYLNN 178
Query: 166 K 166
+
Sbjct: 179 R 179
>gi|367034768|ref|XP_003666666.1| hypothetical protein MYCTH_2311559 [Myceliophthora thermophila ATCC
42464]
gi|347013939|gb|AEO61421.1| hypothetical protein MYCTH_2311559 [Myceliophthora thermophila ATCC
42464]
Length = 722
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
KVVVR LPP +T+ F + + G + +W S+ GK S+ K +RAYL +
Sbjct: 40 KVVVRRLPPGMTEDEFVTILGDEWKVGGPKVDWFSYWPGKVSRHPSKPSRPSRAYLHVIR 99
Query: 63 PEDV------LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDP 116
+D+ ++ A + + N+ + VE+A +++P + DGR+GT+ +DP
Sbjct: 100 RDDLTALLQRVQTATWEDAKETYNDPALLSLPTVEFAAYKKIPGDKKRVDGRQGTIDQDP 159
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
E++ FLE ++ P + P E+Q AE A E + TPL++++
Sbjct: 160 EFMAFLEALANP--DAPK-EVQEVEPPAEDPAKA-EKTMTTPLVEYL 202
>gi|351705030|gb|EHB07949.1| Regulator of nonsense transcripts 3B [Heterocephalus glaber]
Length = 242
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 7/150 (4%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPSTLTREQLQEHLQPM--PEHDYFEFFPNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLEFIS 126
F + F+G+VF++ KG ++ +VE+AP Q+ K+ +KK + GT+ DPEY +FLE +
Sbjct: 109 LFRDRFDGYVFLDNKGQEYAAMVEFAPFQKAAKKKTKKRDTKVGTIGDDPEYRKFLESYA 168
Query: 127 KPVENLPSAEIQLERREAERAGAAKEALIV 156
E + S L E GA LI
Sbjct: 169 TDKEKMTSTPETL----LEEIGAKNRELIA 194
>gi|389746289|gb|EIM87469.1| hypothetical protein STEHIDRAFT_146836 [Stereum hirsutum FP-91666
SS1]
Length = 505
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS--------FRQGKTSQK---HQSCA 54
+R K +VR LP + + F + + +NWV+ F GK +K +
Sbjct: 24 ERLKTIVRRLPANLPEEIFWQSV-------HNWVNDDTVIWKVFYPGKLRKKVNKENILS 76
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKK-DGREGTLL 113
RAY+ FK E + F+ ++GH+F ++ G + + +VE+AP Q++P KK D R GT+
Sbjct: 77 RAYIAFKSEELLAAFSRDYDGHIFRDKAGNESRAVVEFAPYQKIPPLEKKKMDSRNGTIE 136
Query: 114 KDPEYLEFLEFI----SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
KD +++ F++ + +KP +N E + + + + TPL++ ++ +++A
Sbjct: 137 KDEDFISFMQLLDTSSTKPHDNESLLETLIASTQPQPQPKS------TPLLEALKAEKSA 190
Query: 170 KAGPRRLLSN 179
+ +L N
Sbjct: 191 QKDKEAILRN 200
>gi|169862567|ref|XP_001837910.1| hypothetical protein CC1G_10331 [Coprinopsis cinerea okayama7#130]
gi|116501031|gb|EAU83926.1| hypothetical protein CC1G_10331 [Coprinopsis cinerea okayama7#130]
Length = 602
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRY-NWVSFRQGKTSQ---KHQSCARAYLDFK 61
+R K VVR LPP + + F + + W + GK + K +RAY+ FK
Sbjct: 33 ERLKTVVRRLPPNLPEDIFWQTVKPWVTEETATWKVYYPGKFKKRDNKENIPSRAYIAFK 92
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEF 121
E + F+ F+GH+F ++ G + IVE+AP Q+VP + K D + T+ KD +Y+ F
Sbjct: 93 NEELLATFSREFDGHLFKDKAGNESYAIVEFAPYQKVPSEKRKPDTKNATIEKDDDYISF 152
Query: 122 LEFIS 126
+E ++
Sbjct: 153 IESLN 157
>gi|405121729|gb|AFR96497.1| hypothetical protein CNAG_03276 [Cryptococcus neoformans var.
grubii H99]
Length = 415
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 18/129 (13%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-WVSFRQGK----TSQKHQSCARAYLDFK 61
R K+V+R LPP + + F + + + W SF +GK T H +RAY+
Sbjct: 11 RNKLVIRRLPPTLPEDIFWQSVSTWITDKTCLWKSFVKGKAGDSTYDSHPVYSRAYVLMA 70
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP-KQWSKKDGREGTLLKDPEYLE 120
PE ++ F +F+ +VEYAP Q+ P K K D R+GT+ +DP+YL
Sbjct: 71 DPESLINFHR------------AEFQAVVEYAPFQKTPLKTKVKVDNRQGTVDEDPDYLS 118
Query: 121 FLEFISKPV 129
F+E ++ PV
Sbjct: 119 FIESLNAPV 127
>gi|452978770|gb|EME78533.1| hypothetical protein MYCFIDRAFT_190784 [Pseudocercospora fijiensis
CIRAD86]
Length = 512
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 18/177 (10%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
KGP R K+ +R LPP +T F E + + GR +W +RQGK Q K +R
Sbjct: 30 KGPAPRLKLEIRRLPPGLTLTEFEEILGDEWKPGNGRVDWREYRQGKVKQSAAKVPEQSR 89
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGV-------QFKTIVEYAPSQRVPKQWS-KKDG 107
Y+ + E F F ++ G + YAP+QRVP + D
Sbjct: 90 CYMHLLSEPILKELEVRFLEASFHDKAGTYRLPDLKHLPPTIGYAPNQRVPTTTKVRTDN 149
Query: 108 REGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVR 164
R+GT+ +DPE++ FL+ ++P+ P+A L+ E A KE + TPL++ +R
Sbjct: 150 RQGTIDQDPEFMLFLQAETQPIFK-PAA---LDTLGVEAEKAEKEQIKSTPLIEALR 202
>gi|189188818|ref|XP_001930748.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972354|gb|EDU39853.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 619
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K++ R LPP +T+ F E + + G+ +W+++R+GK S K ARAY+
Sbjct: 34 RLKLICRRLPPGLTKAEFIEALGDEWKLGAGKIDWINYRKGKISTDAAKPSKPARAYIHV 93
Query: 61 KKPEDVLEFAEFFNGHVFVNE-KGVQFKTIV-----EYAPSQRVPKQWSKKDGREGTLLK 114
K + V + F + K Q +V EYAP ++P + D R+GT+ +
Sbjct: 94 TKQDHVKVLGDHVRTITFHDATKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQGTIDQ 153
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
D E+ +FLE ++ P+ + E + + KE + TPL++ +R+K+A
Sbjct: 154 DQEFKDFLESLTNPITKPAAPENEGQ----------KEKVKTTPLIEALREKKA 197
>gi|336262497|ref|XP_003346032.1| hypothetical protein SMAC_08533 [Sordaria macrospora k-hell]
gi|380087600|emb|CCC05281.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 813
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 20/178 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQKHQS----CARAYLDFK 61
KVVVR LPP +T+ F + + + G+ +W S+ GK+SQ H S RAY
Sbjct: 38 KVVVRRLPPLLTEEEFFKILGDEWKMGHGKVDWFSYWPGKSSQ-HPSRPSRPTRAYFHVI 96
Query: 62 KPEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKD 115
K +D++ ++ V+ N+ + VE + +++P + D R+GT+ ++
Sbjct: 97 KKDDLISLSQAVQNGVWEDAKESYNDPVLILPPTVELSIHKKIPSDKKRLDNRQGTIDQE 156
Query: 116 PEYLEFLEFISKP--VENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
PE++ FLE ++ P +N SA AE E + TPL++++++K+A +A
Sbjct: 157 PEFMAFLESLANPDAHKNTDSA----GEANAEEPTGKPEKVTTTPLVEYLKEKKAQRA 210
>gi|195431539|ref|XP_002063794.1| GK15858 [Drosophila willistoni]
gi|194159879|gb|EDW74780.1| GK15858 [Drosophila willistoni]
Length = 461
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 38/184 (20%)
Query: 10 VVVRNLPPAITQPAFTE------QIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDF--K 61
+VVR+LPP +T+ F + +ID + +W T + SC RAY++ K
Sbjct: 15 IVVRHLPPTMTEKEFLDHVDPLPEIDSYYYCPADW-------TLGQEASC-RAYINMSTK 66
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSK-KDGREGTLLKDPEYLE 120
E+VL+F + F+G+VF++ KG ++ IVEYAP Q K ++ D + T+ +P
Sbjct: 67 NIEEVLQFRDRFDGYVFLDAKGDEYVAIVEYAPFQCFAKNKARSHDNKVDTIESEP---H 123
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAK---------EALIVTPLMDFVRQKRAAKA 171
F EF+ K +E+ + EA R G K + + TPL+ ++ K+ +
Sbjct: 124 FQEFVQKFIED---------KEEASRLGDVKIDIAYDDTDDEVQSTPLLQYLANKKEKRR 174
Query: 172 GPRR 175
+R
Sbjct: 175 EDKR 178
>gi|26328937|dbj|BAC28207.1| unnamed protein product [Mus musculus]
Length = 216
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLLKDPEYLEFLE 123
F + F+G++F+ KG+++ +VE+AP Q++ K+ KK + G++ DPEY +FLE
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLE 180
>gi|396462222|ref|XP_003835722.1| hypothetical protein LEMA_P050630.1 [Leptosphaeria maculans JN3]
gi|312212274|emb|CBX92357.1| hypothetical protein LEMA_P050630.1 [Leptosphaeria maculans JN3]
Length = 618
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 33/195 (16%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGA----FGGRYNWVSFRQGKTSQ---KHQSCARAYLD 59
R K++ R LPP +T+ F E + GA G+ +W+++R+GK S K +RAY+
Sbjct: 34 RLKLICRRLPPGLTKAEF-EAVLGAEWKVGAGKIDWLNYRKGKISTDAAKPSRPSRAYIH 92
Query: 60 FKKPEDVLEFAEFFNGHVFVNE-KGVQFKTIV-----EYAPSQRVPKQWSKKDGREGTLL 113
K E + + F + K Q +V EYAP ++P + D R+GT+
Sbjct: 93 VTKQEHIRVLGDLVLASTFHDATKSWQDPALVGPPTLEYAPYPKMPGGRRRNDNRQGTID 152
Query: 114 KDPEYLEFLEFISKPVEN--LPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
+D E+ +FLE ++ P+ P ++Q +R + TPL++ +R+K+A +
Sbjct: 153 QDQEFKDFLESLTNPITKPIAPENDVQKDR------------VKTTPLIEALREKKANRE 200
Query: 172 GPRRLLSNGKLSRRA 186
P N K R+A
Sbjct: 201 KP-----NAKTGRQA 210
>gi|322701830|gb|EFY93578.1| nonsense-mediated mRNA decay protein Upf3, putative [Metarhizium
acridum CQMa 102]
Length = 660
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 98/199 (49%), Gaps = 30/199 (15%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG-------GRYNWVSFRQGKTS---QKHQSCARAYL 58
K+V+R LPP +T+ E+ G G+ +W S+ GK S K RAY+
Sbjct: 88 KLVIRRLPPGMTK----EECISILGPEWEISKGKVDWFSYVPGKISIDPSKPSRPGRAYV 143
Query: 59 DFKKPEDVLEFAEFFNGHVFVNEKGVQFKT-------IVEYAPSQRVPKQWSKKDGREGT 111
+ +D++ ++ + + K F ++E++ ++VP + D R+GT
Sbjct: 144 HLVRKDDIMPLSDVVRNATWEDAKST-FTNPSLIGPPVLEFSIYKKVPGTKKRTDARQGT 202
Query: 112 LLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
+ +DPE++ FLE ++ P S +++ +A+ + + + TPL++F+++K+A
Sbjct: 203 IDQDPEFMAFLEGLANPAPMRDSIDVE----DADESAKVEVKVTTTPLVEFLKEKKAN-- 256
Query: 172 GPRRLLSNGKLSRRASGSS 190
R +GK S+ A G S
Sbjct: 257 --RGKDGSGKNSKSAKGKS 273
>gi|361128996|gb|EHL00920.1| putative Regulator of nonsense transcripts 3A [Glarea lozoyensis
74030]
Length = 594
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 94/210 (44%), Gaps = 25/210 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQ---KHQSCAR 55
K P + KV+VR LPP +T+ F + D G G+ ++ ++ GK S+ K +R
Sbjct: 36 KPPAPKLKVIVRRLPPGLTEAEFISVLGNDWKLGQGKVDYYVYKPGKDSKDPSKPSRPSR 95
Query: 56 AYLDFKKPEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
AY ++ +E VF N + VE+AP RVP + D R
Sbjct: 96 AYFHLTNENYLMTLSELVRQSVFEDAQNTFNNPCLIGPPSVEFAPYNRVPGGRRRVDARA 155
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA- 168
GT+ +D E++ FLE ++ P + + AE E + TPL+ +++ K+A
Sbjct: 156 GTIDQDSEFMSFLEGLANPT----TTKDTGADPAAEGVSGKPEKVTTTPLVQYLKDKKAN 211
Query: 169 --------AKAGPRRLLSNGKLSRRASGSS 190
A LL+ GK S+ A+ SS
Sbjct: 212 KHKEAAVKAAKKQEALLAKGKASKDATASS 241
>gi|346321399|gb|EGX90998.1| nonsense-mediated mRNA decay protein Upf3, putative [Cordyceps
militaris CM01]
Length = 635
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
K+++R LPP +T+ + A+ G+ +W SF GK S + AY+ + +D
Sbjct: 75 KLILRRLPPGMTEAECVAILSDAWTLGKGKVDWFSFIPGKISTE------AYIHLVRKDD 128
Query: 66 VLEFAEFFNGHVFVNEK------GVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYL 119
L +E + + K + +E + ++VP + D R+GT+ +DPE++
Sbjct: 129 TLALSETVRAATWEDAKNSFTSPALVGPPCLELSAYKKVPSSKKRTDTRQGTIDQDPEFM 188
Query: 120 EFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRA 168
FLE ++ P SA+++ + + A + + TPL++++++K+A
Sbjct: 189 AFLEGLANPAPLRESADLE----DGDDANKGESKVTTTPLVEYLKEKKA 233
>gi|449267882|gb|EMC78773.1| Regulator of nonsense transcripts 3B, partial [Columba livia]
Length = 387
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTL 112
+RAY++FK ED++ F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK + GT+
Sbjct: 8 SRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTI 67
Query: 113 LKDPEYLEFLEFISKPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
DPEY +FLE S E L S E LE EA A TPL++F++ K
Sbjct: 68 EDDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 120
>gi|156375215|ref|XP_001629977.1| predicted protein [Nematostella vectensis]
gi|156216989|gb|EDO37914.1| predicted protein [Nematostella vectensis]
Length = 105
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVV+R LPP++ + E + +++ F G+ S +RAY++FK ED+++
Sbjct: 1 KVVIRRLPPSLKEEELKEYLGDL--PEHDFFYFVDGQMSFGPVLFSRAYINFKNQEDIIK 58
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTL 112
F + F+G F + KG ++ +VEYAP Q VP++ ++KD + GT+
Sbjct: 59 FRDQFDGSSFFDNKGKKYPAVVEYAPYQGVPRKKNRKDAKCGTI 102
>gi|393910095|gb|EFO23381.2| hypothetical protein LOAG_05102 [Loa loa]
Length = 433
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K PL K+V+R LP A+T Q+ + + F K+S+ S +R Y FK
Sbjct: 22 KIPL---KIVLRRLPAAMTWEQLEIQLSPI--PEFEFSEFIVAKSSE-GMSFSRVYFVFK 75
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP----KQWSKKDGREGTLLKDPE 117
K +D + F E FNG+VFV+ KG + IVE AP+ +VP + ++D + GT+ D E
Sbjct: 76 KDDDTIAFKERFNGYVFVDNKGGESVGIVELAPNPKVPHDKLETAKERDFKCGTIETDHE 135
Query: 118 YLEFL---EFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQK 166
Y +FL E KP + +P ++ E E E+ K A+ TPL ++ +K
Sbjct: 136 YKKFLSERENPQKP-DLIPVEQLIKEIDEKEKM-VEKNAVQETPLTQYMIRK 185
>gi|384485135|gb|EIE77315.1| hypothetical protein RO3G_02019 [Rhizopus delemar RA 99-880]
Length = 298
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 46/178 (25%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
+TKVVVR LPP +++ F E + ++ S+ GK ++
Sbjct: 34 KTKVVVRRLPPLLSKDEFMEAVKTWINEETTDYSSYIPGKVAKSG--------------- 78
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
F+ HVF + +G + + +VE++P Q+ P++ KD REGT+ +DPEYL+FL+ +
Sbjct: 79 -------FDEHVFTDSRGNESRAVVEFSPYQKTPREHKSKDSREGTIDEDPEYLDFLKRL 131
Query: 126 S-----------------KPVENLPS--AEIQLERREAERAGAAKEALIVTPLMDFVR 164
P+E L + A + + AE+A K TPL++ +R
Sbjct: 132 EAEKNKTAETQDDGKDGLNPIEKLENRIAMVTAKTLAAEQANKPK----TTPLLEHLR 185
>gi|312076048|ref|XP_003140687.1| hypothetical protein LOAG_05102 [Loa loa]
Length = 464
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K PL K+V+R LP A+T Q+ + + F K+S+ S +R Y FK
Sbjct: 22 KIPL---KIVLRRLPAAMTWEQLEIQLSPI--PEFEFSEFIVAKSSE-GMSFSRVYFVFK 75
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP----KQWSKKDGREGTLLKDPE 117
K +D + F E FNG+VFV+ KG + IVE AP+ +VP + ++D + GT+ D E
Sbjct: 76 KDDDTIAFKERFNGYVFVDNKGGESVGIVELAPNPKVPHDKLETAKERDFKCGTIETDHE 135
Query: 118 YLEFL---EFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQK 166
Y +FL E KP + +P ++ E E E+ K A+ TPL ++ +K
Sbjct: 136 YKKFLSERENPQKP-DLIPVEQLIKEIDEKEKM-VEKNAVQETPLTQYMIRK 185
>gi|393219819|gb|EJD05305.1| hypothetical protein FOMMEDRAFT_165771 [Fomitiporia mediterranea
MF3/22]
Length = 522
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 20/128 (15%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQKHQ---SCARAYLDF 60
+DR K VVR LPP + + F + + +W +F GK +K+ + +RAY+ F
Sbjct: 35 VDRLKAVVRRLPPNLPEDVFWQSVQPWVTDESVSWRTFYSGKVRKKYNKENTPSRAYIAF 94
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGV-----------QFK-----TIVEYAPSQRVPKQWSK 104
K E + F++ ++GH+F ++ G+ Q K IVE+APSQ+VP + K
Sbjct: 95 KTAEQLATFSQAYDGHIFRDKSGMTPNLSYHYSYRQVKGNESVAIVEFAPSQKVPSEKRK 154
Query: 105 KDGREGTL 112
D R GT+
Sbjct: 155 LDPRMGTI 162
>gi|296814244|ref|XP_002847459.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238840484|gb|EEQ30146.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 575
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 82/182 (45%), Gaps = 36/182 (19%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG-------GRYNWVSFRQGKTSQ----------- 48
R K+ VR LPP +TQ F + A G G+ +W F++GK S
Sbjct: 42 RLKLHVRRLPPGLTQVEF----ESALGDHWKAGRGKIDWFLFKEGKVSSESVFQLNSYDP 97
Query: 49 -KHQSCARAYLDFKK----PE--DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ 101
K RAYL PE DV+ F + N+ + +EYAP RVP
Sbjct: 98 SKPSRPGRAYLRINSSVTIPELSDVIRQTSFQDARNTYNDPALLGPPTLEYAPFSRVPSG 157
Query: 102 WSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMD 161
+ D R GT+ +D E++ FLE ++ PV PS E E AE+A E +TPL+
Sbjct: 158 KVRNDARVGTIDQDAEFIAFLESLTNPVTK-PSDEETTE--SAEKA----EKPTITPLIQ 210
Query: 162 FV 163
++
Sbjct: 211 YL 212
>gi|76157550|gb|AAX28438.2| SJCHGC04530 protein [Schistosoma japonicum]
Length = 230
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 32/181 (17%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
K+VVR LPP + F + ++ + + F S RAY+ F + + +
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPL--PSHTYFRFCDADDSLGALGLTRAYIAFSDIDSLFD 65
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQ-----RVPKQWSKK---DGREGTLLKDPEYLE 120
F E F+G++F++ +G + +VE+A Q +VP +K+ D ++G+LL D EY+E
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDSEYIE 125
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEAL---------------IVTPLMDFVRQ 165
F V+++ SAE+ E E+E +A E++ IVTPL+ ++
Sbjct: 126 F-------VKSMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLTYLNN 178
Query: 166 K 166
+
Sbjct: 179 R 179
>gi|134113891|ref|XP_774193.1| hypothetical protein CNBG1750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256828|gb|EAL19546.1| hypothetical protein CNBG1750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 415
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 29/169 (17%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-WVSFRQGKTSQK----HQSCARAYLDFK 61
R K+V+R LPP + + F + + + W SF +GK H +RAY+
Sbjct: 11 RNKLVIRRLPPTLPEDIFWQSVSAWITDKNCLWKSFIKGKAGDSNYDSHPVYSRAYVLMA 70
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP-KQWSKKDGREGTLLKDPEYLE 120
PE ++ F +F+ +VEYAP Q+ P K K D R+GT+ +DP+YL
Sbjct: 71 DPESLVNFHR------------SEFQAVVEYAPFQKAPLKTKVKVDNRQGTIDEDPDYLS 118
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
+++ ++ PV P E+ + TPL++ +R +++A
Sbjct: 119 YIQSLNAPVTK-PVLEVATPVAQP----------TTTPLLEHLRSQKSA 156
>gi|403170199|ref|XP_003329584.2| hypothetical protein PGTG_11334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168605|gb|EFP85165.2| hypothetical protein PGTG_11334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 490
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQI----------DGAFGGRYNWVSFRQ---GKTSQ---K 49
+RTK+VVR+LPP++ + F + + DG +F+ GKT + K
Sbjct: 3 ERTKLVVRHLPPSLPEEVFWKTLSRWLEPIPREDGTLDPPRCTATFKSYVPGKTRRNKTK 62
Query: 50 HQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
+ +RAY+ F P+ V+EF + + F + G VE+AP Q+V K D R
Sbjct: 63 VEIPSRAYIQFATPDQVVEFHQGYASQAFRDSHGNVTFPKVEFAPYQKVAGPPKKIDSRI 122
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ D +Y FL ++ PV E + + A E +TPL++ +R R A
Sbjct: 123 GTIDTDHDYQAFLARLNAPV-----PEPNTNPDKPDEAPEKVERPEITPLIEHLRNARQA 177
>gi|341038519|gb|EGS23511.1| hypothetical protein CTHT_0002050 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 805
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 25/181 (13%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
K P K+V+R LPP +T+ F + + + G+ +W++F GK SQ K AR
Sbjct: 29 KPPPQGEKIVIRRLPPGMTEDEFLKILGDEWKPGNGKVDWLTFWPGKVSQHPSKPSRPAR 88
Query: 56 AYLDFKKPEDVL-------EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGR 108
AYL + D+L + A++ + ++ + VE+A +++P + D +
Sbjct: 89 AYLHVIQ-RDLLPALLQTVQGAKWEDAKATWDDPALISPPTVEFAVYKKIPGDKKRVDSK 147
Query: 109 EGTLLKDPEYLEFLEFISKP---VENLPSAEIQLERREAERAGAAKEALI-VTPLMDFVR 164
+GT+ DPE++ FLE ++ P E P E E AAK A++ TPL+++++
Sbjct: 148 QGTIDSDPEFMAFLEALANPDAVKETRPELETSAEE-------AAKNAVVTTTPLIEYLK 200
Query: 165 Q 165
+
Sbjct: 201 E 201
>gi|452838806|gb|EME40746.1| hypothetical protein DOTSEDRAFT_74324 [Dothistroma septosporum
NZE10]
Length = 547
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 20/178 (11%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCAR 55
KGP R K+ +R LPP +T F E + + G+ +W ++QGK K +R
Sbjct: 30 KGPAPRLKLEIRRLPPGLTLTEFEETLGDEWKLGNGKVDWREYKQGKVKLGMGKMPEQSR 89
Query: 56 AYLDFKKPEDVLEFAEFFNGHVFVNEKGVQ-------FKTIVEYAPSQRVP-KQWSKKDG 107
YL V E + F G F ++ G + +E+A +QR P ++ D
Sbjct: 90 CYLRVANESMVKELEQRFLGVTFADKAGTHKNPDLRHLQPALEFAMNQRTPLATKARVDS 149
Query: 108 REGTLLKDPEYLEFLEFISKPVENLPSAE-IQLERREAERAGAAKEALIVTPLMDFVR 164
R+GT+ +DPE++ FL ++P+ S + + E++E E K + TPL++ +R
Sbjct: 150 RQGTIDQDPEFMAFLMGETEPIVKAASLDAVGAEKKEGE-----KNEVKTTPLIEALR 202
>gi|255078842|ref|XP_002503001.1| predicted protein [Micromonas sp. RCC299]
gi|226518267|gb|ACO64259.1| predicted protein [Micromonas sp. RCC299]
Length = 389
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 42/177 (23%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDG-AFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
RTK V RNLPP + + AF + F GRY ++ + +G Q+ + A++ F +
Sbjct: 5 RTKAVCRNLPPDLPESAFVRALAAEGFAGRYGYLDYARGAWKQRLPVPSVAWIQFADEQA 64
Query: 66 VLEFAEFFNGHVF-----------------------------------------VNEKGV 84
+ +F F G +F V E
Sbjct: 65 LFDFRGAFGGRIFRAGERDDAEERAGGESATENAEGDGEPAPEEGAPAATKNTAVPEGME 124
Query: 85 QFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLER 141
+++ VEYAP+Q+ P+ +D REGT+ KD YL+F++ + +E P+ + E+
Sbjct: 125 EWRARVEYAPNQKTPRGKQHRDKREGTIGKDAAYLQFVKDLEASMEAPPAPTMTAEQ 181
>gi|171690100|ref|XP_001909982.1| hypothetical protein [Podospora anserina S mat+]
gi|170945005|emb|CAP71116.1| unnamed protein product [Podospora anserina S mat+]
Length = 689
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 12/135 (8%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
KVV+R LPP +T+ F + + G+ +W + GK SQ K + ARAYL +
Sbjct: 38 KVVIRRLPPGLTEAEFHAILGNEWKLGDGKVDWYKWYPGKVSQHPSKPSTPARAYLHVSQ 97
Query: 63 PEDVLEF------AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDP 116
+ + E A++ + N+ + VE++ +++P + + DGR+GT+ +DP
Sbjct: 98 RDQLPELLRKVQEAKWEDAKETYNDPALVAPPTVEFSVYKKIPSEKKRVDGRQGTIDQDP 157
Query: 117 EYLEFLEFISKPVEN 131
E++ FLE ++ P N
Sbjct: 158 EFMAFLESLASPDGN 172
>gi|326924603|ref|XP_003208515.1| PREDICTED: regulator of nonsense transcripts 3B-like, partial
[Meleagris gallopavo]
Length = 379
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTLL 113
RAY++F+ ED++ F + F+G+VFV+ KG ++ IVE+AP Q+ K+ SKK + GT+
Sbjct: 1 RAYINFRNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIE 60
Query: 114 KDPEYLEFLEFISKPVENLPSA-EIQLERREAERAGAAKEALIVTPLMDFVRQK 166
DPEY +FLE S E L S E LE EA A TPL++F++ K
Sbjct: 61 DDPEYKKFLESYSADDEKLTSTPETLLEEIEARNKELI--AKKTTPLLNFLKNK 112
>gi|400598965|gb|EJP66672.1| nonsense-mediated mRNA decay protein Upf3 [Beauveria bassiana ARSEF
2860]
Length = 645
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTS---QKHQSCARAYLD 59
D K+++R LPP +T+ + + G+ +W SF GK S K ARAY+
Sbjct: 72 DGAKLILRRLPPGMTEAECVAILGDRWIVGKGKVDWSSFIPGKISTDPSKPSRPARAYIH 131
Query: 60 FKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPS------QRVPKQWSKKDGREGTLL 113
K +D+L +E + + K + PS ++VP + D R+GT+
Sbjct: 132 LIKKDDMLALSETVIAATWEDAKNSFTSPALVGPPSLELSAYKKVPNNKKRTDARQGTID 191
Query: 114 KDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
+DPE++ FLE ++ PV P + + G K + TPL++++++K+A K+
Sbjct: 192 QDPEFMAFLEGLANPV---PLRDSADLDDDDANKGENK--VTTTPLVEYLKEKKANKS 244
>gi|47169312|pdb|1UW4|A Chain A, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
gi|47169314|pdb|1UW4|C Chain C, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
Length = 91
Score = 69.3 bits (168), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 59
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQR 97
F + F+G+VF++ KG ++ IVE+AP Q+
Sbjct: 60 LFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 89
>gi|449295821|gb|EMC91842.1| hypothetical protein BAUCODRAFT_78782 [Baudoinia compniacensis UAMH
10762]
Length = 482
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 24/178 (13%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ--KHQSCARA 56
K P R K+ +R LPP +T F E + + G+ +W +RQGK K +R
Sbjct: 28 KTPAARLKLEIRRLPPGLTLSEFEETLGDDWKLSNGKVDWREYRQGKIKAPGKVPEQSRC 87
Query: 57 YLDFKKPEDVLEFAEFFNGHVFVNEKGVQ-------FKTIVEYAPSQRVPKQW-SKKDGR 108
YL V EF + F +F ++ G + +AP+QR P Q S+ D R
Sbjct: 88 YLHVVNDTLVREFEQRFLQVLFQDKAGTHRNPDLKFLPPTLGFAPNQRTPLQSKSRADNR 147
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIV--TPLMDFVR 164
+GT+ +DPE++ FLE ++P+ + +I GA KE + V TPL++ +R
Sbjct: 148 QGTIDQDPEFIAFLEAETQPLTKPGALDI---------VGAEKERVEVKTTPLIEDLR 196
>gi|340517692|gb|EGR47935.1| predicted protein [Trichoderma reesei QM6a]
Length = 632
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQIDG---AFG-GRYNWVSFRQGKTSQ---KHQSC 53
+ P + KV++R LPP +T+ A I G A G G+ +W S+ GK S K
Sbjct: 42 TRAPQEGEKVIIRRLPPGLTE-AECLSILGPEWAVGNGKVDWFSYAVGKVSNELSKPSRP 100
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKT-------IVEYAPSQRVPKQWSKKD 106
ARAY+ + E ++ ++F + + K F + ++E A ++VP + D
Sbjct: 101 ARAYIHLMRKEYIMPLSDFVRNATWEDAKST-FTSPSLIGPPVLEIAIYKKVPGNKKRVD 159
Query: 107 GREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
R+GT+ +DPE++ FLE ++ P S E AE + TPL++++
Sbjct: 160 ARQGTIDQDPEFMAFLEGLANPAPPRESNENDDVEEPAET------KVTTTPLIEYL 210
>gi|303278904|ref|XP_003058745.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459905|gb|EEH57200.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 417
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 7/172 (4%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQID--GAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
+ RTK VVRNLPP +F +D G G + F QGK + + A++ F
Sbjct: 1 MPRTKAVVRNLPPDQDASSFFASVDASGFDGTTCAYRDFVQGKRKTRVVIPSVAHVGFDT 60
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFL 122
+ +FA F+ + + G +++ VEYAP Q++P+ + D REGT+ +D +Y +F+
Sbjct: 61 ERALFDFAAAFDARAYDDAFGGEWRARVEYAPYQKIPRLKPRLDKREGTIERDADYKKFV 120
Query: 123 EFISKPVENLPSAEIQLERRE-----AERAGAAKEALIVTPLMDFVRQKRAA 169
E +++ + SAE+ L+RRE ERA K + ++ LM + KR A
Sbjct: 121 EKLAEDPVAMQSAEVLLDRREREKKALERANGGKAPVRLSALMKHLIAKREA 172
>gi|336385749|gb|EGO26896.1| hypothetical protein SERLADRAFT_436716 [Serpula lacrymans var.
lacrymans S7.9]
Length = 493
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 21/142 (14%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-WVSFRQGKTSQ---KHQSCARAYLDFK 61
+R K V+R LPP + + F + + W F GK + K +RAY+ F+
Sbjct: 30 ERLKTVIRRLPPNLPEDVFWQSVQSWVTDDTTLWKMFYPGKVGKRINKENIPSRAYIAFR 89
Query: 62 KPEDVLEFAEFFNGHVFVNEKGV-----------------QFKTIVEYAPSQRVPKQWSK 104
E + F+ ++GH+F ++ G+ + + +VE+AP Q++P + K
Sbjct: 90 NEEQLAIFSREYDGHLFRDKAGLSRQLSLHSVIEMYLPGNESQAVVEFAPYQKIPTEKKK 149
Query: 105 KDGREGTLLKDPEYLEFLEFIS 126
D R T+ KD +YL F+E ++
Sbjct: 150 ADARNATIEKDEDYLSFVESLN 171
>gi|426194127|gb|EKV44059.1| hypothetical protein AGABI2DRAFT_187731 [Agaricus bisporus var.
bisporus H97]
Length = 479
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 53/198 (26%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS--------FRQGKTSQ---KHQS 52
P +R K+VVR LPP + + F + + NWV+ + GK + K
Sbjct: 32 PGERLKIVVRRLPPNLPEDIFWQSVS-------NWVTDDTVMWKLYFPGKPKKRMNKENI 84
Query: 53 CARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTL 112
+RAY+ FK E +L F+ ++GH FV++ G + +VE+AP Q+VP + K D R T+
Sbjct: 85 PSRAYIAFKDSEHLLFFSREYDGHKFVDKAGNESYAVVEFAPYQKVPGEKKKPDSRNATI 144
Query: 113 LK------------------DPEYLEFLEFI-----SKPV--ENL---------PSAEIQ 138
K D +Y+ F+E + ++PV E L P
Sbjct: 145 EKGQALRVRYAMFSISNAHLDEDYISFVESLNVQSNAEPVTIETLVASTRPASPPKTTPL 204
Query: 139 LERREAER-AGAAKEALI 155
LE +AER A KEA+I
Sbjct: 205 LEALKAERQAQKDKEAII 222
>gi|321260903|ref|XP_003195171.1| hypothetical protein CGB_G2380W [Cryptococcus gattii WM276]
gi|317461644|gb|ADV23384.1| Hypothetical protein CGB_G2380W [Cryptococcus gattii WM276]
Length = 416
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYN-WVSFRQGKTSQKHQSC----ARAYLDFKKP 63
K+V+R LPP + + F + + + W SF +GK + +RAY+ P
Sbjct: 13 KLVIRRLPPTLPEDIFWQSVSTWITDKTCLWKSFVKGKAGDSNYDSRPVYSRAYVLMADP 72
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP-KQWSKKDGREGTLLKDPEYLEFL 122
E ++ F +F+ +VEYAP Q+ P K K D R+GT+ +DP+YL F+
Sbjct: 73 ESLVNFHR------------AEFQAVVEYAPFQKTPLKTKVKVDNRQGTIDEDPDYLSFM 120
Query: 123 EFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVR 164
E ++ PV P+ E+ A TPL++ +R
Sbjct: 121 ESLNAPVTK-PALEV----------AAPVTQPTTTPLLEHLR 151
>gi|409078127|gb|EKM78491.1| hypothetical protein AGABI1DRAFT_129598 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 497
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 18/122 (14%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS--------FRQGKTSQ---KHQS 52
P +R K+VVR LPP + + F + + NWV+ + GK + K
Sbjct: 32 PGERLKIVVRRLPPNLPEDIFWQSVS-------NWVTDDTVMWKLYFPGKPKKRMNKENI 84
Query: 53 CARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTL 112
+RAY+ FK E +L F+ ++GH FV++ G + +VE+AP Q+VP + K D R T+
Sbjct: 85 PSRAYIAFKDSEHLLFFSREYDGHKFVDKAGNESYAVVEFAPYQKVPGEKKKPDSRNATI 144
Query: 113 LK 114
K
Sbjct: 145 EK 146
>gi|367054148|ref|XP_003657452.1| hypothetical protein THITE_2123179 [Thielavia terrestris NRRL 8126]
gi|347004718|gb|AEO71116.1| hypothetical protein THITE_2123179 [Thielavia terrestris NRRL 8126]
Length = 729
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 36/185 (19%)
Query: 1 MKGPLDRTKVVVRNLPPAITQPAFTEQI--DGAFG-GRYNWVSFRQGKTSQKHQS----C 53
+K P+ KVVVR LPP +T+ F + + A G GR +W S+ GK S KH S
Sbjct: 29 VKAPMQGEKVVVRRLPPGMTEEEFVTILGDEWAVGHGRVDWFSYWPGKVS-KHPSKPSRP 87
Query: 54 ARAYLDFKKPEDVL-------------EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPK 100
ARAYL + D+L + E +N V+ V+F T +++P
Sbjct: 88 ARAYLHVTR-RDLLTALLQTVQSNKWEDAKETYNDPALVSLPTVEFATY------KKIPS 140
Query: 101 QWSKKDGREGTLLKDPEYLEFLEFISKPVEN--LPSAEIQLERREAERAGAAKEALIVTP 158
+ DGR+GT+ +DPE++ FLE ++ P N P+A+ + + E TP
Sbjct: 141 GKKRVDGRQGTIDQDPEFMAFLEGLANPDVNKEAPNAD------QGAEETSKTEKTTTTP 194
Query: 159 LMDFV 163
L++++
Sbjct: 195 LVEYL 199
>gi|224136045|ref|XP_002327367.1| predicted protein [Populus trichocarpa]
gi|222835737|gb|EEE74172.1| predicted protein [Populus trichocarpa]
Length = 123
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 26/113 (23%)
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREAERAG---------------AAKEAL--IVT 157
DP+YLEFL+ I+KP NLP AEIQ +AE +G A KE I T
Sbjct: 9 DPDYLEFLKLIAKPARNLPCAEIQ----DAEESGQIYLLKKFVLKELSEATKETPISIST 64
Query: 158 PLMDFVRQKRAAKAGPR--RLLSNGKLSRRASGSSTGSPASGSSKRGSDKKKA 208
PLM+FVRQKRA K G + ++ GK + AS +++G S S+KRGS KK
Sbjct: 65 PLMEFVRQKRADKGGNKGSAVVKGGKRAGSASPTNSG---SSSTKRGSATKKV 114
>gi|226488837|emb|CAX74768.1| putative hUPF3A [Schistosoma japonicum]
Length = 533
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 35/181 (19%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
K+VVR LPP + F + ++ + + F S RAY+ F + + +
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPL--PSHTYFRFCDADDSLGALGLTRAYIAFSDIDSLFD 65
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQ-----RVPKQWSKK---DGREGTLLKDPEYLE 120
F E F+G++F++ + +VE+A Q +VP +K+ D ++G+LL D EY+E
Sbjct: 66 FKERFDGYIFLD---CESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDSEYIE 122
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEAL---------------IVTPLMDFVRQ 165
F V+++ SAE+ E E+E +A E++ IVTPL+ ++
Sbjct: 123 F-------VKSMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLTYLNN 175
Query: 166 K 166
+
Sbjct: 176 R 176
>gi|12861524|dbj|BAB32218.1| unnamed protein product [Mus musculus]
Length = 155
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSLYPHVYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRV 98
F + F+G++F+ KG+++ +VE+AP Q++
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQKI 154
>gi|440893685|gb|ELR46360.1| Regulator of nonsense transcripts 3A, partial [Bos grunniens mutus]
Length = 460
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 96/181 (53%), Gaps = 25/181 (13%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+R LPP++T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 1 QVVIRRLPPSLTKEQLEQQLHPLPA--HDYFEFFTADVSLYPHLYSRAYINFRNPDDILL 58
Query: 69 FAEFFNGHVFVNE---------------KGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTL 112
F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++
Sbjct: 59 FRDRFDGYIFIDSKEKPFQNGFCNLFPVKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSI 118
Query: 113 LKDPEYLEFLE-FISKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAA 169
DPEY +FLE + + + S E L EA+ +E + TPL+++++ ++
Sbjct: 119 EDDPEYKKFLETYCVEEEKTSVSPETLLGDIEAK----TRELIARRTTPLLEYIKNRKLE 174
Query: 170 K 170
K
Sbjct: 175 K 175
>gi|358378266|gb|EHK15948.1| hypothetical protein TRIVIDRAFT_184401 [Trichoderma virens Gv29-8]
Length = 625
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 25/180 (13%)
Query: 2 KGPLDRT-----KVVVRNLPPAITQPAFTEQIDG---AFG-GRYNWVSFRQGKTSQ---K 49
K P RT KV++R LPP +T+ A I G A G G+ +W S+ GK S K
Sbjct: 37 KAPKTRTPHEGEKVIIRRLPPGMTE-AECLSILGSEWAVGSGKVDWFSYAPGKASNELSK 95
Query: 50 HQSCARAYL-----DFKKP-EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS 103
ARAYL D+ P +V+ A + + N + +E + ++VP
Sbjct: 96 PSRPARAYLHVMRKDYIMPLSEVVRSATWEDAKCTFNSSSLIGPPALEMSIYKKVPGTKK 155
Query: 104 KKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
+ D R+GT+ +DPE++ FLE ++ P P E +E + E A K + TPL++++
Sbjct: 156 RVDARQGTIDQDPEFMAFLEGLANPA---PPRE-GIENEDVEEAPETK--VTTTPLIEYL 209
>gi|326913847|ref|XP_003203244.1| PREDICTED: regulator of nonsense transcripts 3A-like [Meleagris
gallopavo]
Length = 413
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 36 YNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPS 95
+++ F S +RAY++F+ PED+L F + F+G+VF++ KG+++ +VE+AP
Sbjct: 14 HDYFEFCTADPSLYPHLYSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVEFAPF 73
Query: 96 QRVPKQWSKKDGRE-GTLLKDPEYLEFLEFISKPVENLPS------AEIQLERREAERAG 148
Q++ K+ KK + G++ DPEY +FLE E + + EI+ + RE
Sbjct: 74 QKISKKKLKKKDAKAGSIEDDPEYRKFLESYCADEEKICANPETLLGEIEAKTREL---- 129
Query: 149 AAKEALIVTPLMDFVRQKRAAK 170
A TPL+++++ ++ K
Sbjct: 130 ---IARRTTPLLEYIKNRKLEK 148
>gi|358338395|dbj|GAA41070.2| regulator of nonsense transcripts 3, partial [Clonorchis sinensis]
Length = 509
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
TKVV+R LPP +T F + +D + + F + + ARAY+ F + +
Sbjct: 14 TKVVIRRLPPKLTDAEFRQIVDPL--PPHTYFRFCSPDPTLGNLGTARAYITFCDIDALF 71
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP--------KQWSKKDGREGTLLKDPEYL 119
+F E F+ +VFV+ +G + +VE+A Q + K+ K D ++GTL +DP++
Sbjct: 72 DFKERFDDYVFVDSEGNESYGLVEFAICQTLATTKETSTGKRSEKFDKKQGTLNEDPDFQ 131
Query: 120 EFLEFISKPVENLPSA 135
+FL+ I +P EN A
Sbjct: 132 DFLKTI-QPPENATEA 146
>gi|310800307|gb|EFQ35200.1| smg-4/UPF3 family protein [Glomerella graminicola M1.001]
Length = 647
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDG---AFGGRYNWVSFRQGKTSQ---KHQSCARAY 57
P++ KVV+R LPP +T+ + A G +W +F QGK SQ K R Y
Sbjct: 37 PVEGDKVVIRRLPPGMTEQELWNNLGDEWKAGNGLVSWHNFVQGKISQDPAKPSRPGRVY 96
Query: 58 LDFKKPE------DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGT 111
L K E ++++ + + + N + ++E+A ++P + D R+GT
Sbjct: 97 LHVLKRESLNVLSNLIQAKSWEDAKMTSNSASLVGPPVLEFAIYNKIPSGKKRSDPRQGT 156
Query: 112 LLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKE------ALIVTPLMDFVRQ 165
+ +DPE++ FL ++ P ++ER G E + TPL++F+++
Sbjct: 157 IDQDPEFMAFLLSLTNP---------EMERENENSEGKDTEDSKPEAKVTTTPLIEFIKE 207
>gi|320593952|gb|EFX06355.1| nonsense-mediated mRNA decay protein [Grosmannia clavigera kw1407]
Length = 808
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 117/262 (44%), Gaps = 42/262 (16%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
K V+R LPP +T+ F + + GR W+SF GK S+ K A A L +
Sbjct: 50 KFVIRRLPPGLTEDEFFTILGDEWKQGRGRVGWLSFHAGKISKDPSKPSRPAFAVLHVLR 109
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGREGTLLKDP 116
ED+ ++ +V+ K ++ E++ ++VP + D R+GT+ +D
Sbjct: 110 NEDLGLLSDVVRSASWVDAKESWTSPVLVGPPVAEFSLYKKVPSGKRRTDSRQGTIDQDA 169
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERA-----GAAKEAL------------IVTPL 159
E++ FLE ++ P SA + + GAA AL TPL
Sbjct: 170 EFMAFLEALANPTSAKESAAAAANGTDGGQTATATNGAAGGALGEDDAAKTKTKVTSTPL 229
Query: 160 MDFVRQKRAAKAGPRRLLSNGKLSRRASGSSTGS-----PASGSSKRGSDKKKASTTMYV 214
+DF+R+K+A K+ + +NGK ++ GS PAS + DK +
Sbjct: 230 IDFLREKKANKS---KETANGKSGKQGRDKGRGSGTLDEPASSKKRAKGDKVDKAD---- 282
Query: 215 LRDTAKNSSGKDKSTYILVPKR 236
RD ++ SG+ K++ ++ K+
Sbjct: 283 -RDKERSGSGRSKASVKILTKK 303
>gi|85081441|ref|XP_956721.1| hypothetical protein NCU03435 [Neurospora crassa OR74A]
gi|9368552|emb|CAB98213.1| related to nucleolar phosphoprotein [Neurospora crassa]
gi|28917796|gb|EAA27485.1| predicted protein [Neurospora crassa OR74A]
Length = 822
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
KVVVR LPP +T+ F + + + G+ +W S+ GK+SQ+ +D
Sbjct: 37 KVVVRRLPPLLTEEEFFKILGDEWKVGHGKVDWFSYWPGKSSQQK-------------DD 83
Query: 66 VLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYL 119
+L ++ V+ N+ + VE + +++P + D R+GT+ ++PE++
Sbjct: 84 LLVLSQAVQNGVWEDAKESYNDPVLNLPPTVELSIHKKIPSDKKRVDNRQGTIDQEPEFM 143
Query: 120 EFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
FLE ++ P + + + E AE A E + TPL++++++K+A +A
Sbjct: 144 AFLESLANPDAHK-TTDTAGEPN-AEETSAKPEKVTTTPLVEYLKEKKAQRA 193
>gi|403180084|ref|XP_003338377.2| hypothetical protein PGTG_19888, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375165806|gb|EFP93958.2| hypothetical protein PGTG_19888, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 273
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 21/180 (11%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQI----------DGAFGGRYNWVSFRQ---GKTSQ---K 49
+RTK+VVR+LPP++ + F + + DG +F+ GKT + K
Sbjct: 3 ERTKLVVRHLPPSLPEEVFWKTLSRWLEPIPREDGTLDPPRCTATFKSYVPGKTRRNKTK 62
Query: 50 HQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE 109
+ +RAY+ F P+ V+EF + + F + G VE+AP Q+V K D R
Sbjct: 63 VEIPSRAYIQFATPDQVVEFHQGYASQAFRDSHGNVTFPKVEFAPYQKVAGPPKKIDSRI 122
Query: 110 GTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAA 169
GT+ D +Y FL ++ PV E + + A E +TPL++ +R R A
Sbjct: 123 GTIDTDHDYQAFLARLNAPV-----PEPSTNPDKPDEAPEKVERPEITPLIEHLRNARQA 177
>gi|240248225|emb|CAX18772.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Danio
rerio]
Length = 155
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++++ E + +++ F S +RAY++FK PED++
Sbjct: 43 SKVVIRRLPPSLSKDQLQEHLSPL--PSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 100
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ 96
F + F+G+VF++ KG ++ +VE+AP Q
Sbjct: 101 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQ 129
>gi|336468834|gb|EGO56997.1| hypothetical protein NEUTE1DRAFT_65951 [Neurospora tetrasperma FGSC
2508]
gi|350288875|gb|EGZ70100.1| hypothetical protein NEUTE2DRAFT_91209 [Neurospora tetrasperma FGSC
2509]
Length = 814
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 24/172 (13%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG---GRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
KVVVR LPP +T+ F + + + G+ +W S+ GK+SQ+ +D
Sbjct: 38 KVVVRRLPPLLTEEEFFKILGDEWKVGHGKVDWFSYWPGKSSQQK-------------DD 84
Query: 66 VLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYL 119
+L ++ V+ N+ + VE + +++P + D R+GT+ ++PE++
Sbjct: 85 LLVLSQAVQNGVWEDAKESYNDPVLNLPPTVELSIHKKIPSDKKRLDNRQGTIDQEPEFM 144
Query: 120 EFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAKA 171
FLE ++ P + + + E AE A E + TPL++++++K+A +A
Sbjct: 145 AFLESLANPDAHK-TTDTAGEPN-AEETSAKPEKVTTTPLVEYLKEKKAQRA 194
>gi|302565879|pdb|2L08|A Chain A, Solution Nmr Structure Of Nonsense Mrna Reducing Factor
3a From H. Sapiens, Northeast Structural Genomics
Consortium Target Hr4714b
Length = 97
Score = 66.6 bits (161), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
VV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L F
Sbjct: 12 VVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLF 69
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQR 97
+ F+G++F++ KG+++ +VE+AP Q+
Sbjct: 70 RDRFDGYIFLDSKGLEYPAVVEFAPFQK 97
>gi|453081511|gb|EMF09560.1| Smg4_UPF3-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 582
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 30/185 (16%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFG-------GRYNWVSFRQGKTSQ---KHQSCARA 56
R K+ VR LPP +T E+ +G G G+ +W+ +RQGK K +RA
Sbjct: 35 RLKLEVRRLPPGLT----LEEFEGILGDEWKLGNGKVDWLEYRQGKVKLSLGKVPEQSRA 90
Query: 57 YLDFKKPEDVLEFAEFFNGHVFVNEKGV-------QFKTIVEYAPSQRVPKQWS-KKDGR 108
Y+ + F F F ++ G + +AP+QR + D R
Sbjct: 91 YVHLVDEAAISAFEARFLAVTFQDKAGTYRNPDMKHLPPTLGFAPNQRTTINTKLRSDNR 150
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIV--TPLMDFVRQK 166
+GT+ +DPE++ FLE ++P+ SA I ++E E +++ TPL++ +R+K
Sbjct: 151 QGTIDQDPEFIAFLEAETQPIAR--SAAIDSVSVDSE----TPEKVVIKSTPLIEALREK 204
Query: 167 RAAKA 171
+A+KA
Sbjct: 205 KASKA 209
>gi|429862350|gb|ELA37002.1| nonsense-mediated mrna decay protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 627
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 9 KVVVRNLPPAITQPAFTEQIDG---AFGGRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
KVV+R LPP +T+ ++ A G +W +F GK SQ K AR YL+ K
Sbjct: 42 KVVIRRLPPGLTEQELWNKLGDEWKAGQGLVSWHNFEAGKISQDAAKPSRPARVYLNVLK 101
Query: 63 PEDVLEFAEFF------NGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDP 116
ED+ + + + N + ++E A ++P + D R+GT+ +DP
Sbjct: 102 REDLNTLSNLIQARSWEDAKMTSNSPSLVGPPVLEMASYNKIPSGKKRTDPRQGTIDQDP 161
Query: 117 EYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEA-----LIVTPLMDFV 163
E++ FL+ ++ P +N E +E AA E+ + TPL++F+
Sbjct: 162 EFMAFLQDLTNPEQN-------KETEGSESKDAADESKPDAKVTTTPLIEFL 206
>gi|344241026|gb|EGV97129.1| Regulator of nonsense transcripts 3A [Cricetulus griseus]
Length = 414
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPLPA--HDYFEVVAADLSLYPHLYSRAYINFRNPDDIL 123
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ 96
F + F+G++F+ KG+++ +VE+AP Q
Sbjct: 124 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQ 152
>gi|296411781|ref|XP_002835608.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629394|emb|CAZ79765.1| unnamed protein product [Tuber melanosporum]
Length = 615
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-----WVSFRQGKTSQKHQSC---ARAYL 58
R KVVVR+LP I + ++ GA N W S+ QGK ++ +R +
Sbjct: 33 RLKVVVRHLPSLIKE----DEFKGAMAEYINEETVEWASWVQGKIPEERTKAPKDSRCVI 88
Query: 59 DFKKPEDVLEFAEFFNGH-VFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPE 117
FK P + +E H F + KG +EY+P Q+ PK+ + D R GT+ DP+
Sbjct: 89 KFKNPLQITALSEGLRLHGPFTDSKGNTTNPQMEYSPFQKAPKRSVRIDARAGTIESDPD 148
Query: 118 YLEFL 122
++ F+
Sbjct: 149 FIAFV 153
>gi|82752819|ref|XP_727441.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483284|gb|EAA19006.1| Drosophila melanogaster SD10857p [Plasmodium yoelii yoelii]
Length = 317
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGR---YNWVSFRQGKTSQKHQSCARAYLDFKKP 63
+ K+V+RNLPP + + F + Y +V+ GK S +R YL FK
Sbjct: 153 KKKIVIRNLPPTLNENNFFDSFSNNLKDELDYYYYVNGSIGKNSSDDIIHSRIYLSFKDY 212
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
EF + +G F + GV++K V +AP+Q + + ++ D R TL DP +L+ E
Sbjct: 213 MKTEEFIKTQDGKYFYDTNGVKYKANVTFAPNQTIIHK-NRIDNRNNTLESDPYFLKCCE 271
Query: 124 FISKPVE 130
+ P+E
Sbjct: 272 EMHNPIE 278
>gi|403273083|ref|XP_003928355.1| PREDICTED: regulator of nonsense transcripts 3A [Saimiri
boliviensis boliviensis]
Length = 444
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTL 112
+RAY++F+ P+D+L F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++
Sbjct: 80 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSI 139
Query: 113 LKDPEYLEFLE-FISKPVENLPSAEIQLERREAERAGAAKEALI--VTPLMDFVRQKRAA 169
DPEY +FLE + + + + E+ L EA+ +E + TPL+++++ ++
Sbjct: 140 EDDPEYKKFLETYCVEEEKTSTNPEMLLGEMEAK----TRELIARRTTPLLEYIKNRKLE 195
Query: 170 K 170
K
Sbjct: 196 K 196
>gi|323507764|emb|CBQ67635.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 519
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 12/121 (9%)
Query: 31 AFGGRYNWVSFRQGKT---SQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFK 87
A ++ F GK + K ARAY+ F P+ ++ F + F+GH+F + KG +
Sbjct: 184 AAAATVDYKHFVAGKLKTDTNKQNKHARAYVRFLDPQSLVHFHKAFDGHIFRDSKGKESI 243
Query: 88 TIVEYAPSQRV---PK------QWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQ 138
IVE+AP Q+V P + +K D ++GT+ KD +YL F+E +++ +++ +E +
Sbjct: 244 AIVEFAPYQKVVLPPSAAAQRGRRAKPDPKQGTIDKDADYLSFVERLNQAGDDVKRSEGE 303
Query: 139 L 139
L
Sbjct: 304 L 304
>gi|328855091|gb|EGG04220.1| hypothetical protein MELLADRAFT_78386 [Melampsora larici-populina
98AG31]
Length = 460
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 6 DRTKVVVRNLPPAITQPAF-------TEQIDGAFGGRY--NWVSFRQGKTSQ---KHQSC 53
+R KVV+R+LPPA+ + F + I+ + + + SF GK Q K
Sbjct: 3 ERNKVVIRHLPPALPEEVFWKTLSPWIDPINESTPAKCLVTYKSFIPGKLRQNKGKIDLP 62
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
+RAYL F ED++EF + F + +G +E+AP Q++P Q K D R GT+
Sbjct: 63 SRAYLYFSSVEDLVEFHHGYAQQAFRDSRGNITVPKIEFAPFQKIPTQVKKLDPRCGTID 122
Query: 114 KDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
+Y FL+ + P+ E + E +TPL+ +R R
Sbjct: 123 SSQDYQLFLKKLESPLNQ--ETEDDSNQSNLTEDSTKLEIPKITPLIQHLRSLR 174
>gi|355701126|gb|EHH29147.1| Nonsense mRNA reducing factor 3A, partial [Macaca mulatta]
Length = 373
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGRE-GTL 112
+RAY++F+ P+D+L F + F+G++F++ KG+++ +VE+AP Q++ K+ KK + G++
Sbjct: 9 SRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSI 68
Query: 113 LKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
DPEY +FLE E SA + E E A TPL+++++ ++ K
Sbjct: 69 EDDPEYKKFLETYCVEEEKT-SANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEK 125
>gi|398392255|ref|XP_003849587.1| hypothetical protein MYCGRDRAFT_117814, partial [Zymoseptoria
tritici IPO323]
gi|339469464|gb|EGP84563.1| hypothetical protein MYCGRDRAFT_117814 [Zymoseptoria tritici
IPO323]
Length = 573
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
R K+ +R LPP +T F E + + G+ +W +RQGK K +R Y+
Sbjct: 31 RLKLEIRRLPPGLTLTEFEETLGDEWKLGNGKVDWREYRQGKVKSGLGKFPEQSRCYIHL 90
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGV-------QFKTIVEYAPSQRVPKQWS-KKDGREGTL 112
V E F VF ++ G + +AP QR P + D R+GT+
Sbjct: 91 VNESMVKELDARFLAIVFHDKAGTYKHSDLKHLPPTIGFAPIQRTPLNVKVRADNRQGTI 150
Query: 113 LKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQ 165
DPE++ FLE ++P+ P+A ++ E+ K + TPL+D +R+
Sbjct: 151 DTDPEFIAFLEAETQPIVK-PAA---IDSVNVEKDVTEKVKVKSTPLIDALRE 199
>gi|388852343|emb|CCF53958.1| uncharacterized protein [Ustilago hordei]
Length = 505
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 44/161 (27%)
Query: 7 RTKVVVRNLPPAITQPAF-----------------TEQIDGAFGG------------RYN 37
++KVVVR LPP + + F T DGA +
Sbjct: 116 KSKVVVRRLPPNLPEQVFWKAVSPWVRDAADCQAITSSSDGAEASSSTLPAPTPATPTVD 175
Query: 38 WVSFRQGKT---SQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAP 94
+ SF +GK S K ARAY+ F P ++ F + F+GH+F + KG +IVE+AP
Sbjct: 176 FKSFIRGKLKSDSNKQNKLARAYIRFLDPTSLVTFHKNFDGHIFRDAKGKGSVSIVEFAP 235
Query: 95 SQRVPKQWS------------KKDGREGTLLKDPEYLEFLE 123
Q+V S K D ++G++ KD +YL F+E
Sbjct: 236 YQKVVLSPSTTGAGVGRGRRMKPDPKQGSIEKDADYLAFVE 276
>gi|71003399|ref|XP_756380.1| hypothetical protein UM00233.1 [Ustilago maydis 521]
gi|46095817|gb|EAK81050.1| hypothetical protein UM00233.1 [Ustilago maydis 521]
Length = 559
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 20/154 (12%)
Query: 37 NWVSFRQGKT---SQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYA 93
++ F GK + K ARAY+ F + +++F + F+GH+F + +G + IVE+A
Sbjct: 201 DYKQFVAGKLKTDTNKQNKHARAYVRFLDAQMLVQFYKAFDGHIFRDSRGNESIAIVEFA 260
Query: 94 PSQRV----PK-------QWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERR 142
P Q+V P+ + +K D ++GT+ KD +Y FLE +SK + + +E +L
Sbjct: 261 PYQKVVVSTPRTGTRGGPRAAKLDAQQGTIDKDADYQCFLERLSKADDQVQRSEGELLAS 320
Query: 143 EAERAGAAKE------ALIVTPLMDFVRQKRAAK 170
+ G KE A VTPL+ +R+++ A+
Sbjct: 321 LLDSKGKEKETEARRLAGKVTPLLLHLREQKMAQ 354
>gi|351702555|gb|EHB05474.1| Regulator of nonsense transcripts 3A [Heterocephalus glaber]
Length = 189
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQR-VPKQWSKKDGREGTL 112
+RA ++F+ P+D+L F + F+G+VF++ KG+++ +VE+AP Q+ V ++ K+D + G++
Sbjct: 107 SRACINFRNPDDILLFRDRFDGYVFMSSKGLEYPAVVEFAPFQKIVRRKLKKRDTKMGSI 166
Query: 113 LKDPEYLEF 121
DPEY F
Sbjct: 167 EDDPEYTVF 175
>gi|346976552|gb|EGY20004.1| hypothetical protein VDAG_02020 [Verticillium dahliae VdLs.17]
Length = 673
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 27/182 (14%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRY-------NWVSFRQGKTSQ---KHQ 51
K P++ KV++R LPP +T+ E++ G ++ +W F +GK SQ K
Sbjct: 35 KTPVEGDKVIIRRLPPGMTE----EEVWTILGDKWKAGNGLVDWSDFARGKVSQDPAKSS 90
Query: 52 SCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKK 105
R YL KK E + E E + + K + EY +++P +
Sbjct: 91 RPGRLYLHVKKRESLAELDEIVQTRTWEDTKLTHNNPCLVGPPSLEYCIYKKIPGARKRS 150
Query: 106 DGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAK--EALIVTPLMDFV 163
D R+GT+ +DPE++ +L ++ P E + E E AG +K + TPL++++
Sbjct: 151 DARQGTIDQDPEFMSYLLSLTN-----PETEKEGETGEDPSAGESKPDTKVTTTPLIEYI 205
Query: 164 RQ 165
++
Sbjct: 206 KE 207
>gi|339246413|ref|XP_003374840.1| choline-phosphate cytidylyltransferase B [Trichinella spiralis]
gi|316971900|gb|EFV55622.1| choline-phosphate cytidylyltransferase B [Trichinella spiralis]
Length = 703
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 16/146 (10%)
Query: 10 VVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFR-QGKTSQKHQSCARAYLDFKKPEDVLE 68
V++R LPP IT+ E++ SFR K CAR Y+ FK EDVL+
Sbjct: 323 VILRRLPPYITE----EELLAILSPLPPHDSFRFDPPFYPKQWECARVYIQFKNIEDVLQ 378
Query: 69 FAEFFNGHVFVNEKGVQFKT------IVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFL 122
F + FNG+VFV+ G IVE AP + K++ GT+ + EYL+F+
Sbjct: 379 FRDTFNGYVFVDACGSNENDCNESIGIVEAAPYRENFGVVGKRNPLAGTIEQSEEYLKFV 438
Query: 123 EFISKPVE-----NLPSAEIQLERRE 143
E ++ PV+ + S +++RRE
Sbjct: 439 EKLNAPVKAPDTVSFESQLAEIDRRE 464
>gi|170596366|ref|XP_001902739.1| Smg-4/UPF3 family protein [Brugia malayi]
gi|158589404|gb|EDP28411.1| Smg-4/UPF3 family protein [Brugia malayi]
Length = 206
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K PL K+V+R LP A+T Q+ + + F K+S+ S +R Y FK
Sbjct: 43 KMPL---KIVLRRLPAAMTWEQLKTQLSPI--PEFEFSEFVAAKSSE-GISFSRVYFVFK 96
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP----KQWSKKDGREGTLLKDPE 117
K +D + F E F+G+VFV++KG + IVE AP+ +VP + ++D + GT+ D E
Sbjct: 97 KDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFKCGTIEADHE 156
Query: 118 YLEFL---EFISKPVENLPSAEIQLERREAER 146
Y +FL E + KP + +P ++ E E E+
Sbjct: 157 YKKFLSERENLQKP-DPIPMEQLIKEIDEKEK 187
>gi|380478534|emb|CCF43542.1| nonsense-mediated mRNA decay protein [Colletotrichum higginsianum]
Length = 653
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 25/235 (10%)
Query: 4 PLDRTKVVVRNLPPAITQPAFTEQIDG---AFGGRYNWVSFRQGKTSQ---KHQSCARAY 57
P++ KV++R LPP +T+ + A G +W +F QGK SQ K R Y
Sbjct: 37 PVEGDKVIIRRLPPGMTEQELWNNLGDEWKAGNGLVSWHNFAQGKISQDPAKPSRPGRVY 96
Query: 58 LDFKKPEDV------LEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGT 111
L K E + ++ + + + N + ++E+A +VP + D R+GT
Sbjct: 97 LHVLKRESLNTLSTLIQAKSWEDAKMTSNSPSLVGPPVLEFAIYNKVPGGKKRTDPRQGT 156
Query: 112 LLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAK---EA-LIVTPLMDFVRQKR 167
+ +DPE++ FL ++ P E+ E +E A + EA + TPL++++++K+
Sbjct: 157 IDQDPEFMSFLLSLTNP-------EMDKENEGSESKDAEESKPEAKVTTTPLIEYIKEKK 209
Query: 168 AAKAGPRRLLSNGKLSRRASGSSTGSPASGS--SKRGSDKKKASTTMYVLRDTAK 220
A+K + K +R+ S + +PAS + SK+G K + ++T K
Sbjct: 210 ASKQKEAAAAKSAKQARQESNTKGKAPASTADDSKKGKKDTKGEKSADKPKETVK 264
>gi|336372911|gb|EGO01250.1| hypothetical protein SERLA73DRAFT_50679 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
+RAY+ F+ E + F+ ++GH+F ++ G + + +VE+AP Q++P + K D R T+
Sbjct: 8 SRAYIAFRNEEQLAIFSREYDGHLFRDKAGNESQAVVEFAPYQKIPTEKKKADARNATIE 67
Query: 114 KDPEYLEFLE 123
KD +YL F+E
Sbjct: 68 KDEDYLSFVE 77
>gi|407926218|gb|EKG19187.1| Regulator of nonsense-mediated decay UPF3 [Macrophomina phaseolina
MS6]
Length = 435
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEK------GVQFKTIVEYAPSQRVPKQWSKKDG 107
+RAYL + V+ A+ F + K + V++AP R+P + D
Sbjct: 12 SRAYLHLTEQAHVVPLADKVRKTAFTDAKNSTRDPALIGPPTVDFAPFNRIPGGRRRNDA 71
Query: 108 REGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
R+G + +DPE+ +FLE ++ PV SA + A+ K+ + TPL++ +R+K+
Sbjct: 72 RQGLIDQDPEFKDFLESLTNPVPK--SAPVD---NAADEVAVKKDEVRTTPLIEHLREKK 126
Query: 168 AAKAGPRRLLSNGKLSR 184
AAK P+ + GK R
Sbjct: 127 AAKEKPQPAKAQGKHGR 143
>gi|440632753|gb|ELR02672.1| hypothetical protein GMDG_05626 [Geomyces destructans 20631-21]
Length = 467
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAF---GGRYNWVSFRQGKTSQ---KHQSCARAYLDFKK 62
KVVVR L PA+T+ F + I + GR +W S++ GK S K +RAYL
Sbjct: 35 KVVVRRLAPALTETEFMKIIGDEWKVGAGRVDWFSYKPGKVSTDPSKASRPSRAYLHLIN 94
Query: 63 PEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDP 116
+ + + F + +EY R+P + D R+GT+ DP
Sbjct: 95 EPYLTQLSNHVRQLTFEDAAKTFTNPCLLGPASLEYTSYARIPSGKRRTDARQGTIDLDP 154
Query: 117 EYLEFLEFISKP 128
E+++FLE ++ P
Sbjct: 155 EFMDFLESLANP 166
>gi|297694524|ref|XP_002824528.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Pongo
abelii]
Length = 443
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F E F+G++F++ K ++K +E
Sbjct: 126 LFRERFDGYIFLDSKDPEYKKFLE 149
>gi|124513328|ref|XP_001350020.1| upf3, putative [Plasmodium falciparum 3D7]
gi|23615437|emb|CAD52428.1| upf3, putative [Plasmodium falciparum 3D7]
Length = 271
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 15 LPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQS---CARAYLDFKKPEDVLEFAE 71
LPP +T+ F + ++ F G S+ + +R YL FK EF
Sbjct: 119 LPPTLTEENFFDSFSNNIKDELDYYYFVNGSASKDSSNDIIYSRMYLSFKDDMKTDEFIR 178
Query: 72 FFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKPVE 130
NG F + GV++K +V YAP+Q + K+ +K D R TL D +L+ E ++ PV+
Sbjct: 179 TQNGKFFYDLNGVKYKALVSYAPNQTLIKK-NKPDSRNNTLESDEYFLKCCEEMNNPVQ 236
>gi|194672185|ref|XP_607889.4| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Bos
taurus]
gi|297481373|ref|XP_002692050.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Bos
taurus]
gi|296481608|tpg|DAA23723.1| TPA: UPF3 regulator of nonsense transcripts homolog A isoform 2
[Bos taurus]
Length = 479
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP++T+ +Q+ +++ F S +RAY++F+ P+D+L
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQLHPLPA--HDYFEFFTADVSLYPHLYSRAYINFRNPDDIL 124
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 125 LFRDRFDGYIFIDSKDPEYKKFLE 148
>gi|406863684|gb|EKD16731.1| nonsense-mediated mRNA decay protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 589
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 7 RTKVVVRNLPPAITQPAFTEQID---GAFGGRYNWVSFRQGKTSQ---KHQSCARAYLDF 60
+ K VVR L P +T+ FT + A G+ +W ++ GK S+ K +RAY
Sbjct: 35 KLKTVVRRLAPGLTEDEFTSVLGEEWKAGQGKVDWFLYKPGKESKDASKPSKPSRAYFHL 94
Query: 61 KKPEDVLEFAEFFNGHVF------VNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLK 114
+L ++ F N + VE+AP R P + D R GT+ +
Sbjct: 95 TSETHLLSLSDHVRQSNFEDALNTFNSACLIGPPTVEFAPYGRTPAGRRRVDARAGTIDQ 154
Query: 115 DPEYLEFLEFISKPVENLPSAEIQLERREA------ERAGAAKEALIVTPLMDFVRQKRA 168
DPE++ FLE ++ P +EA + A +E + +TPL+ ++ K+A
Sbjct: 155 DPEFMAFLEQLANPTTG----------KEANGDSQFDLGTAKQEKVTMTPLVQALKDKKA 204
>gi|296189037|ref|XP_002742609.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2
[Callithrix jacchus]
Length = 439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLHPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G+VF++ K ++K +E
Sbjct: 126 LFRDRFDGYVFLDSKDPEYKKFLE 149
>gi|256090058|ref|XP_002581038.1| upf3 regulator of nonsense transcripts-like protein [Schistosoma
mansoni]
Length = 280
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVVVR LPP + F +D + + F S R Y+ F + + +
Sbjct: 8 KVVVRGLPPKLGADDFIRIVDPL--PSHTYFRFCGADDSLGGLGLTRVYITFNDMDSLFD 65
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ--------WSKKDGREGTLLKDPEYLE 120
F E F+G++F++ +G + +VE+A Q + K D ++G+LLKD Y++
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFAVCQVLACAKGSSDDNGGGKVDKKQGSLLKDSAYVK 125
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALI---------------VTPLMDFVRQ 165
FL + SAE+ E E+E E+++ VTPL+ ++
Sbjct: 126 FL--------SSQSAEVCAEISESESKKTPWESILDDLQNKEVNALQTQTVTPLLTYLNN 177
Query: 166 K 166
+
Sbjct: 178 R 178
>gi|358057294|dbj|GAA96643.1| hypothetical protein E5Q_03314 [Mixia osmundae IAM 14324]
Length = 427
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 36/195 (18%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGR----------------------------YNW 38
R K+VVR+LPP + + F + + A G +W
Sbjct: 50 RQKIVVRHLPPNLPEHLFWKSVQQALPGVQLSASTDTAPTTHDAPEQVHEAQPSPSVIDW 109
Query: 39 VSFRQGKTSQ---KHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPS 95
++ GK + + +RAYL F + + ++ F ++GH+F + G + VE+AP
Sbjct: 110 QAYYPGKLRKSKGQEDVPSRAYLHFTELDTLVAFCSAYDGHMFRDSAGNVSRAQVEFAPY 169
Query: 96 QR--VPKQWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEA 153
Q+ +P+ +K D ++ ++L+D ++ F+E + P + A A A+K+A
Sbjct: 170 QKLPLPQTEAKADPKQNSILEDTDFTVFVETLRAPER---AETADGASAAAAAAAASKDA 226
Query: 154 LIVTPLMDFVRQKRA 168
TPL++++R++RA
Sbjct: 227 KKSTPLLEYLRKQRA 241
>gi|18375525|ref|NP_542418.1| regulator of nonsense transcripts 3A isoform hUpf3pdelta [Homo
sapiens]
gi|27881818|gb|AAH23569.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Homo
sapiens]
gi|119629657|gb|EAX09252.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_d [Homo sapiens]
Length = 443
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|426376077|ref|XP_004054835.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Gorilla
gorilla gorilla]
Length = 443
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|402902531|ref|XP_003914154.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Papio
anubis]
Length = 430
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|345559857|gb|EGX42988.1| hypothetical protein AOL_s00215g774 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 9 KVVVRNLPPAITQPAFTE-QIDGAFGGRYNWVSFRQGKTSQ---KHQSCARAYLDFKKPE 64
K+V+R+LP ++T+ + D W SF GK Q K + + A+ + E
Sbjct: 51 KIVIRHLPASMTEQEYNVLTADVINKDTVEWSSFIPGKVPQDRNKPTTFSIAHARARSTE 110
Query: 65 DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWS--KKDGREGTLLKDPEYLEFL 122
+++ NG + +G ++ VE+AP Q+ P+Q + D R GT+ DP+++ FL
Sbjct: 111 TLIQIKAGLNGKPLTDSRGQEYAVQVEFAPFQKFPQQKGRLRHDARSGTIDNDPDFIFFL 170
Query: 123 EFISKPVENLPSA-------------EIQLERREAERAGAAKEALIV--------TPLMD 161
E + N S+ E ++ + + EA I+ TPL++
Sbjct: 171 ENLKHTGPNASSSAKTEGDGDKSKEKETKVYKDPLAAPVPSYEAPIMEPGSKVTTTPLVE 230
Query: 162 FVRQKRAA 169
F++Q++ A
Sbjct: 231 FIKQQKLA 238
>gi|443896125|dbj|GAC73469.1| nonsense-mediated decay protein Upf3 [Pseudozyma antarctica T-34]
Length = 572
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 37/158 (23%)
Query: 7 RTKVVVRNLPPAITQPAFTEQI-----DGA--------------------------FGGR 35
++KVV+R LPP + + F + + D A
Sbjct: 154 KSKVVIRRLPPNLPEAVFWKAVSPWIRDAADCQPPASDSLTSSSGEASASTSSASALTPT 213
Query: 36 YNWVSFRQGKT---SQKHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEY 92
++ F GK + K ARAY+ F ++ F + F+GH+F + K + IVE+
Sbjct: 214 VDFKQFIPGKLKTDASKQNKHARAYVRFLDANALVLFHKHFDGHIFRDSKARETVAIVEF 273
Query: 93 APSQR-VPK--QWSKKDGREGTLLKDPEYLEFLEFISK 127
AP Q+ VP + SK D ++GT+ D +YL F+E +SK
Sbjct: 274 APYQKVVPARGRRSKPDPKQGTIETDADYLAFVERLSK 311
>gi|388517151|gb|AFK46637.1| unknown [Lotus japonicus]
Length = 57
Score = 58.5 bits (140), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 5 LDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSF 41
LDRTKVV+R+LPP ++Q + QID AF GRYNW+SF
Sbjct: 2 LDRTKVVLRHLPPTLSQASLVAQIDAAFLGRYNWLSF 38
>gi|360043976|emb|CCD81522.1| upf3 regulator of nonsense transcripts-like protein [Schistosoma
mansoni]
Length = 338
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVVVR LPP + F +D + + F S R Y+ F + + +
Sbjct: 8 KVVVRGLPPKLGADDFIRIVDPL--PSHTYFRFCGADDSLGGLGLTRVYITFNDMDSLFD 65
Query: 69 FAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ--------WSKKDGREGTLLKDPEYLE 120
F E F+G++F++ +G + +VE+A Q + K D ++G+LLKD Y++
Sbjct: 66 FKERFDGYIFLDCEGNESSALVEFAVCQVLACAKGSSDDNGGGKVDKKQGSLLKDSAYVK 125
Query: 121 FLEFISKPVENLPSAEIQLERREAERAGAAKEALI---------------VTPLMDFVRQ 165
FL + SAE+ E E+E E+++ VTPL+ ++
Sbjct: 126 FL--------SSQSAEVCAEISESESKKTPWESILDDLQNKEVNALQTQTVTPLLTYLNN 177
Query: 166 K 166
+
Sbjct: 178 R 178
>gi|380791535|gb|AFE67643.1| regulator of nonsense transcripts 3A isoform hUpf3pdelta, partial
[Macaca mulatta]
Length = 233
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 126 LFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|325193356|emb|CCA27694.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 382
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWV-SFRQGKTSQKHQSCA--RAYLDFKKPE 64
KV++RN+PP++T I + N + F GKT + C R YLD+K
Sbjct: 102 CKVLIRNIPPSVTLEEM-RVILAPYNISCNMIWRFVAGKTRMNERPCVTGRMYLDYKG-- 158
Query: 65 DVLEFAEF---FNGHVF-VNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLE 120
D ++ AE NG N+K + V YAPS+R+P ++D + G + DP YLE
Sbjct: 159 DNVKAAELITSLNGFAIESNQKDSKRTLEVAYAPSRRLPGDRRRRDPKVGEIFNDPAYLE 218
Query: 121 FLEFISKPVE 130
F+E + P +
Sbjct: 219 FIEALDAPAQ 228
>gi|324513196|gb|ADY45432.1| Regulator of nonsense transcripts 3B [Ascaris suum]
Length = 447
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K P+ K+V+R LP +T Q+D ++ F + RAY FK
Sbjct: 19 KAPI---KIVLRRLPRGMTWKELQMQLDPLPETEFS--QFVAVGVDAPKIAFPRAYFVFK 73
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW----SKKDGREGTLLKDPE 117
ED++ F + FNG+VF++ +G + +VE AP+ +V + K+D + T+ + E
Sbjct: 74 NDEDIIAFRDRFNGYVFIDSQGSESMGLVELAPNPKVSRHKLEDSKKRDKKCATIDTEVE 133
Query: 118 YLEFL---EFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
Y +F+ E KPV + E +++ E + A + A+ TPL ++ +K K
Sbjct: 134 YKKFVDDRENPPKPV--IVPIEQRIKEIEMKEKNALENAVQETPLTQYMIRKNEEK 187
>gi|332264284|ref|XP_003281174.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Nomascus
leucogenys]
Length = 444
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ S +RAY++F+ P+D+L
Sbjct: 69 SKVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEIFAADLSLYPHLYSRAYINFRNPDDIL 126
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 127 LFRDRFDGYIFLDSKDPEYKKFLE 150
>gi|170596368|ref|XP_001902740.1| Smg-4/UPF3 family protein [Brugia malayi]
gi|158589405|gb|EDP28412.1| Smg-4/UPF3 family protein [Brugia malayi]
Length = 176
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K PL K+V+R LP A+T Q+ + + F K+S+ S +R Y FK
Sbjct: 43 KMPL---KIVLRRLPAAMTWEQLKTQLSPI--PEFEFSEFVAAKSSEG-ISFSRVYFVFK 96
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP----KQWSKKDGREGTL 112
K +D + F E F+G+VFV++KG + IVE AP+ +VP + ++D + GT+
Sbjct: 97 KDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFKCGTI 151
>gi|148690218|gb|EDL22165.1| mCG3697, isoform CRA_a [Mus musculus]
Length = 159
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ + H D + P+D+L
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQL----------------RPLPAHDYFEVVAADLRNPDDIL 109
Query: 68 EFAEFFNGHVFVNEKGVQFKTIVEYAPSQ 96
F + F+G++F+ KG+++ +VE+AP Q
Sbjct: 110 LFRDRFDGYIFIGNKGLEYPAVVEFAPFQ 138
>gi|194377606|dbj|BAG57751.1| unnamed protein product [Homo sapiens]
Length = 146
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 125
Query: 68 EFAEFFNGHVFVNEKG 83
F + F+G++F++ KG
Sbjct: 126 LFRDRFDGYIFLDSKG 141
>gi|114694183|ref|XP_001175337.1| PREDICTED: regulator of nonsense transcripts 3A-like [Pan
troglodytes]
Length = 411
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
+VV+ LPP +T+ EQ+ +++ F S +RAY++F+ P+D+L
Sbjct: 39 QVVICRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILL 96
Query: 69 FAEFFNGHVFVNEKGVQFKTIVE 91
F + F+G++F++ K ++K +E
Sbjct: 97 FRDRFDGYIFLDSKDPEYKKFLE 119
>gi|169607309|ref|XP_001797074.1| hypothetical protein SNOG_06711 [Phaeosphaeria nodorum SN15]
gi|160701385|gb|EAT85362.2| hypothetical protein SNOG_06711 [Phaeosphaeria nodorum SN15]
Length = 456
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 34/186 (18%)
Query: 33 GGRYNWVSFRQGKTSQ---KHQSCARAYLDFKKPEDVLEFAEFFNGHVFVNE-KGVQFKT 88
G+ +WV++R+GK S+ K ARAY+ K E V + F + K Q
Sbjct: 57 AGKVDWVNWRKGKISKDAAKPSRPARAYIHVTKQEHVPMLGDRIRDSTFHDAAKSWQDSA 116
Query: 89 IV-----EYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERRE 143
+V E+AP ++P + D R+GT+ +D E+ +FLE ++ P+ +
Sbjct: 117 LVGPPTLEFAPFSKMPGGRRRNDNRQGTIDQDQEFKDFLESLTNPI----------TKSA 166
Query: 144 AERAGAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNGKLSRRASGSSTGSPASGSSKRGS 203
A ++ + TPL++ +R+K+A K P ++ G A G +K +
Sbjct: 167 APDDTQKQDKVKTTPLIEALREKKANKDKP---------------NAKGRNARGDAKEDA 211
Query: 204 DKKKAS 209
+KKAS
Sbjct: 212 TEKKAS 217
>gi|299470177|emb|CBN78205.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 475
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 79/199 (39%), Gaps = 42/199 (21%)
Query: 9 KVVVRNLPPAITQPAFTEQID--------GAFGGRYNWVSFRQGKTSQKH-QSCARAYLD 59
KVVVR LP + + F E + G GG ++ + F GK S+K + AYL
Sbjct: 27 KVVVRRLPHQMKEEEFVEALAAAASDAGMGERGGSWDLMYFTPGKMSKKRGRVTGTAYLH 86
Query: 60 FKK------------------PEDVLEFA------------EFFNGHVFVNEKGVQFKTI 89
+ D L A V
Sbjct: 87 IDRERGANADLSLSKLRAAVSASDALTPAAEPASSSSKEGSGGKQSGGGVASTTATAGPT 146
Query: 90 VEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGA 149
VE AP Q++ KQ K+D R GT+ KD Y F + P + LPSA++Q + RE+E
Sbjct: 147 VEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESE---G 203
Query: 150 AKEALIVTPLMDFVRQKRA 168
+E L+DF+R++ A
Sbjct: 204 KEEPKPQNALLDFLRERGA 222
>gi|156099182|ref|XP_001615593.1| mRNA decay protein [Plasmodium vivax Sal-1]
gi|148804467|gb|EDL45866.1| mRNA decay protein, putative [Plasmodium vivax]
Length = 302
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQ----SCARAYLDFKKPE 64
K+++R+LPP +++ F E ++ + G K+Q + +R YL FK
Sbjct: 140 KIIIRHLPPTLSEDNFFESFPSNLKDELDYYYYVNG-CVPKNQGGDITHSRMYLSFKDDL 198
Query: 65 DVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEF 124
EF + +G F + G +FK +V +AP Q + + +K D TL D +L+ E
Sbjct: 199 KTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKLDEMNNTLESDAYFLKCCEE 257
Query: 125 ISKPVENLPSAEIQLERREAERAGAAKE-ALIVTPLM 160
++ P E ++ + A+ + KE +I+ PL+
Sbjct: 258 MNNPQE-----PVKKDDDNADLSNVIKEDGVILPPLV 289
>gi|213408813|ref|XP_002175177.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|212003224|gb|EEB08884.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 310
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 8 TKVVVRNLPPAITQPAFTEQI----DGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKP 63
K+VVR LP + F + + + R++ + K + H + A L FK P
Sbjct: 13 CKLVVRKLPANLPASVFWDSVKPWHEAIERSRFHPGHLQPEKDLEVH---SYAILLFKSP 69
Query: 64 EDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQW---SKKDGREGTLLKDPEYLE 120
E V F + H FVN+ V++ V AP+Q+ W +KD R GTL +D ++++
Sbjct: 70 EQVTSFFLHYQNHAFVNKNNVRYHASVAVAPNQK----WVAHGRKDSRMGTLEEDEDFIQ 125
Query: 121 F---LEFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKR 167
F LE PS + E + + TPL+++V+ K+
Sbjct: 126 FKKSLESAEADSSLKPSFPLAPE----DSVVTTEPVKTTTPLLEYVKAKQ 171
>gi|389585052|dbj|GAB67783.1| mRNA decay protein, partial [Plasmodium cynomolgi strain B]
Length = 266
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQG---KTSQKHQSCARAYLDFKKPED 65
K+++R+LPP +++ F + ++ + G K + + +R YL FK
Sbjct: 124 KIIIRHLPPTLSEDNFFDSFPSNLKDELDYYYYVNGCVPKNAGGDITHSRMYLSFKDDLK 183
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
EF + +G F + G +FK +V +AP Q + + +K D TL D +L+ E +
Sbjct: 184 TKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKSDDMNNTLESDAYFLKCCEEM 242
Query: 126 SKPVE 130
+ P E
Sbjct: 243 NNPEE 247
>gi|25148417|ref|NP_741600.1| Protein SMG-4, isoform b [Caenorhabditis elegans]
gi|20069144|emb|CAD18872.2| Protein SMG-4, isoform b [Caenorhabditis elegans]
Length = 368
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 9 KVVVRNLPPAITQPAFTEQI----DGAFGGRYNWVSFRQGKTSQKHQSCARAYL--DFKK 62
KVV+R LP +T+ EQI + G ++ +F CA A L +F +
Sbjct: 10 KVVLRRLPKYMTEHEVLEQISPLPEEVIGTYFHPANF-------SFDRCAYATLTVNFSE 62
Query: 63 PED-VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ---RVPKQWSKKDGREGTLLKDPEY 118
D ++EF F+G++FV+ +G +VE A +Q + + K+D R G +L D Y
Sbjct: 63 YCDSMMEFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYY 122
Query: 119 LEFLEFISKPVENLPSAEIQLERREAERAGAAKEAL--IVTPLMDFVRQKRAAK 170
L+F + + + +P ++ + R+ + A+ + + TPL+ + +K K
Sbjct: 123 LDFCKKLEE-ERAIPILTLEQQIRKLNQPDDARTQIDKMETPLVKYFFEKETGK 175
>gi|25148414|ref|NP_741601.1| Protein SMG-4, isoform a [Caenorhabditis elegans]
gi|13548374|emb|CAA94820.2| Protein SMG-4, isoform a [Caenorhabditis elegans]
Length = 329
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 8 TKVVVRNLPPAITQPAFTEQI----DGAFGGRYNWVSFRQGKTSQKHQSCARAYL--DFK 61
KVV+R LP +T+ EQI + G ++ +F CA A L +F
Sbjct: 9 VKVVLRRLPKYMTEHEVLEQISPLPEEVIGTYFHPANF-------SFDRCAYATLTVNFS 61
Query: 62 KPED-VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ---RVPKQWSKKDGREGTLLKDPE 117
+ D ++EF F+G++FV+ +G +VE A +Q + + K+D R G +L D
Sbjct: 62 EYCDSMMEFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKY 121
Query: 118 YLEFLEFISKPVENLPSAEIQLERREAERAGAAKEAL--IVTPLMDFVRQKRAAK 170
YL+F + + + +P ++ + R+ + A+ + + TPL+ + +K K
Sbjct: 122 YLDFCKKLEEE-RAIPILTLEQQIRKLNQPDDARTQIDKMETPLVKYFFEKETGK 175
>gi|221058833|ref|XP_002260062.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193810135|emb|CAQ41329.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 266
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQK---HQSCARAYLDFKKPED 65
K+++R+LPP +++ F + ++ + G + + +R YL FK
Sbjct: 124 KIIIRHLPPTLSEDNFFDSFPSNLKDELDYYYYVNGCVPKNPGGDITHSRMYLSFKDDLK 183
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLE 123
EF + +G F + G +FK +V +AP Q + + +K D TL D +L++ E
Sbjct: 184 TKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKLDDMNNTLESDAYFLKYCE 240
>gi|145349708|ref|XP_001419270.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579501|gb|ABO97563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 325
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 38/155 (24%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQID----GAFGGRYNWVSFRQGKTSQKHQSC-------- 53
+R K+V+RNLP + + A E + GA + W + +GK
Sbjct: 41 ERRKIVIRNLPATLAREALEEALRRDGFGALDETFEWWEYARGKARGGTGGATTTTTRRA 100
Query: 54 ---ARAYLDFKKPEDVLEFAEFFNGHVF-VNEK-----------GVQFKTIVEYAPSQRV 98
+R Y ++ E V E ++G F V + G + + VEYAPSQ
Sbjct: 101 TTPSRFYATVRRGETVKALRERYDGATFRVRARDEEGRAIEGGGGEETRARVEYAPSQWT 160
Query: 99 PKQWSKK-----------DGREGTLLKDPEYLEFL 122
P+++ ++ + EGT+ +D +YL+FL
Sbjct: 161 PREFGERYATAGETAPAENALEGTIEEDEDYLKFL 195
>gi|341881193|gb|EGT37128.1| hypothetical protein CAEBREN_00499 [Caenorhabditis brenneri]
Length = 330
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
D+ KVV+R LP +T+ EQI FR + + A L F + D
Sbjct: 12 DQVKVVLRRLPKYMTESEVLEQI-SPLPAEVIETFFRPANFAFDRAAYATLTLVFSEYCD 70
Query: 66 -VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ---RVPKQWSKKDGREGTLLKDPEYLEF 121
+L+F F+G++FV+ +G +VE A +Q + + K+D R G L D YL+F
Sbjct: 71 SLLDFERRFDGYIFVDSRGNDSTAVVEAAVNQHFSKCDRARMKQDTRVGALDTDKYYLDF 130
Query: 122 LEFI----SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + P+ L +L + E RA + + TPL+ + +K K
Sbjct: 131 CKKLEDEKAIPIMTLEQQIRKLNQPEDARAQIGR---LETPLVKYFLEKEGGK 180
>gi|341879389|gb|EGT35324.1| CBN-SMG-4 protein [Caenorhabditis brenneri]
Length = 366
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
D+ KVV+R LP +T+ EQI FR + + A L F + D
Sbjct: 12 DQVKVVLRRLPKYMTESEVLEQI-SPLPAEVIETFFRPANFAFDRAAYATLTLVFSEYCD 70
Query: 66 -VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQ---RVPKQWSKKDGREGTLLKDPEYLEF 121
+++F F+G++FV+ +G +VE A +Q + + K+D R G L D YL+F
Sbjct: 71 SLMDFERRFDGYIFVDSRGNDSTAVVEAAVNQHFSKCDRARMKQDTRVGALDTDKYYLDF 130
Query: 122 LEFI----SKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFVRQKRAAK 170
+ + + P+ L +L + E RA + + TPL+ + +K K
Sbjct: 131 CKKLEDEKAIPIMTLEQQIRKLNQPEDARAQIGR---LETPLVKYFLEKEGGK 180
>gi|358422817|ref|XP_003585492.1| PREDICTED: regulator of nonsense transcripts 3B-like, partial [Bos
taurus]
Length = 123
Score = 48.9 bits (115), Expect = 0.006, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED++
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 108
Query: 68 EFAEFFNGHVFVNEK 82
F + F+G+VF++ K
Sbjct: 109 LFRDRFDGYVFLDNK 123
>gi|308811927|ref|XP_003083271.1| unnamed protein product [Ostreococcus tauri]
gi|116055150|emb|CAL57546.1| unnamed protein product [Ostreococcus tauri]
Length = 319
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 51/213 (23%)
Query: 8 TKVVVRNLPPAITQPAFTEQI--DG-----AFGGRYNWVSFR--------QGKTSQKHQS 52
TK+V+R LP + + AF + DG AF ++WV +R T+++ ++
Sbjct: 40 TKIVIRPLPSRLAREAFERTLARDGFDPPSAF---FDWVGYRTVGRGGVDGRGTARRMRA 96
Query: 53 CARAYLDFKKPE------DVLEFAEF------FNGHVFVNEKGV-QFKTIVEYAPSQRVP 99
+ AY+ K E D A F G V E GV + + VE APSQ P
Sbjct: 97 RSIAYVACKTTEIAKRVRDRYHGATFRVRARDSEGRVIEGEDGVEETRATVERAPSQWTP 156
Query: 100 KQWSKK-----------DGREGTLLKDPEYLEFL-EFISKPVENLPSAEIQLERREAERA 147
+ + ++ + EGT+ D EYL+F+ E S+ + + ++ A R
Sbjct: 157 RTFGERYASTSGETNAVNALEGTIESDAEYLKFVSELESERTRTRTTGAVAPKQESARRK 216
Query: 148 GAAKEALIVTPLMDFVRQKRAAKAGPRRLLSNG 180
T L++++ +KRAA+ + +NG
Sbjct: 217 S--------TALLEYIWKKRAAEERASKRAANG 241
>gi|308484388|ref|XP_003104394.1| hypothetical protein CRE_22805 [Caenorhabditis remanei]
gi|308258042|gb|EFP01995.1| hypothetical protein CRE_22805 [Caenorhabditis remanei]
Length = 514
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGA---FGGRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
D KV++R LP +T+ EQI G Y F + H S A L F +
Sbjct: 7 DEVKVMLRRLPKYMTEKEVMEQISPLPEEVVGTY----FYPANFAFDHASYASLTLVFSE 62
Query: 63 PED-VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQ---WSKKDGREGTLLKDPEY 118
D +++F F+G++FV+ +G +VE A +Q K +D R G +L D +
Sbjct: 63 YSDSLIDFERRFDGYIFVDSRGNDSSAVVEAAVNQNFSKCDRGRMTEDTRVGAILNDKYF 122
Query: 119 LEFLE 123
LEF E
Sbjct: 123 LEFCE 127
>gi|402580308|gb|EJW74258.1| hypothetical protein WUBG_14834, partial [Wuchereria bancrofti]
Length = 104
Score = 48.1 bits (113), Expect = 0.010, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 15/109 (13%)
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVP----KQWSKKDGREGTLLKDPE 117
K +D + F E F+G+VFV++KG + IVE AP+ +VP + ++D + GT+ D E
Sbjct: 2 KDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFKCGTIEADHE 61
Query: 118 YLEFL---EFISKPVENLPSAEIQLERREAERAGAAKEALIVTPLMDFV 163
Y +FL E + KP + +P ++ E E KE ++ + + DF+
Sbjct: 62 YKKFLSERENLQKP-DPIPMEQLIKEIDE-------KEKMLESDVFDFI 102
>gi|353236383|emb|CCA68379.1| hypothetical protein PIIN_02244 [Piriformospora indica DSM 11827]
Length = 107
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 7 RTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS--------FRQGKTSQKHQSCA---- 54
R K VVR LPP + + F + WV+ FRQG S A
Sbjct: 18 RIKAVVRKLPPNLPEDVFWKSC-------LQWVNENTVKDKWFRQGNLKGARFSAASIFS 70
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQF 86
RAY+ FK PE++ F++ ++GH F +++G+ F
Sbjct: 71 RAYIAFKTPEELATFSQNYDGHAFRDKQGMHF 102
>gi|68479205|ref|XP_716408.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
gi|68479334|ref|XP_716346.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
gi|46438012|gb|EAK97350.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
gi|46438075|gb|EAK97412.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
Length = 407
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG------GRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
K V+R LPP++T+ F Q+ + ++ ++ KT+ + +RAY++F
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKICQFYYIQGHYPKTNFEVPIYSRAYVNFSN 109
Query: 63 PEDVLEFAEF---------FNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
D LEF F F+ + V EK + K + A + + + SKK+ + L+
Sbjct: 110 QHDSLEFLNFLKEKPFENEFDSIIPVIEKALFHKMVDTSANTSQKTLKESKKNLKRDDLV 169
Query: 114 KDPEYLEFLEFISKPVENL 132
+ Y +FL FI+ ++
Sbjct: 170 NNEIYKKFLMFINNEIDQF 188
>gi|68010359|ref|XP_670717.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486237|emb|CAH93914.1| conserved hypothetical protein [Plasmodium berghei]
Length = 120
Score = 47.8 bits (112), Expect = 0.016, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
+R YL FK EF + +G F + GV++K V +AP+Q + + ++ D R TL
Sbjct: 6 SRIYLSFKDYMKTEEFIKTQDGKYFYDTNGVKYKANVTFAPNQTIIHK-NRIDNRNNTLE 64
Query: 114 KDPEYLEFLEFISKPVE 130
DP +L+ E + P+E
Sbjct: 65 SDPYFLKCCEEMHNPIE 81
>gi|238878415|gb|EEQ42053.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 407
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG------GRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
K V+R LPP++T+ F Q+ + ++ ++ KT+ + +RAY++F
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKICQFYYIQGHYPKTNFEVPIYSRAYVNFSN 109
Query: 63 PEDVLEFAEF---------FNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
D LEF F F+ + V EK + K + A + + + SKK+ + L+
Sbjct: 110 QHDSLEFLNFLKEKPFENEFDSIIPVIEKALFHKMVDTSANTSQKTLKESKKNLKRDDLV 169
Query: 114 KDPEYLEFLEFISKPVENL 132
+ Y +FL FI+ ++
Sbjct: 170 NNEIYKKFLMFINNEIDQF 188
>gi|402585993|gb|EJW79932.1| smg-4/UPF3 family protein [Wuchereria bancrofti]
Length = 113
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 2 KGPLDRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFK 61
K PL K+V+R LP A+T Q+ + + F K+S+ S +R Y F
Sbjct: 23 KMPL---KIVLRRLPAAMTWEQLETQLSPI--PEFEFSEFVAAKSSE-GISFSRVYFVFM 76
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIV 90
K +D + F E F+G+VFV++KG +F I
Sbjct: 77 KDDDAIAFKERFHGYVFVDDKGDKFFLIF 105
>gi|156348614|ref|XP_001621914.1| hypothetical protein NEMVEDRAFT_v1g143243 [Nematostella
vectensis]
gi|156208259|gb|EDO29814.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 46.6 bits (109), Expect = 0.035, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLE 68
KVV+R LPP++ + E + +++ F G+ S +RAY++FK ED+++
Sbjct: 1 KVVIRRLPPSLKEEELKEYLGDL--PEHDFFYFVDGQMSFGPVLFSRAYINFKNQEDIIK 58
Query: 69 FAEFFNGHVFVNEKG 83
F + F+G F + KG
Sbjct: 59 FRDQFDGSSFFDNKG 73
>gi|238604948|ref|XP_002396333.1| hypothetical protein MPER_03460 [Moniliophthora perniciosa FA553]
gi|215468687|gb|EEB97263.1| hypothetical protein MPER_03460 [Moniliophthora perniciosa FA553]
Length = 100
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 54 ARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLL 113
+RAY+ FK E + F ++G NE + +VE+AP Q+VP K D R T+
Sbjct: 9 SRAYVAFKTEEQLTTFHREYDG----NES----QAVVEFAPYQKVPSDKKKLDARNATIE 60
Query: 114 KDPEYLEFLEFISKP 128
+D +Y+ F++ +++P
Sbjct: 61 QDEDYISFVQSLNQP 75
>gi|294955276|ref|XP_002788460.1| hypothetical protein Pmar_PMAR010017 [Perkinsus marinus ATCC 50983]
gi|239903929|gb|EER20256.1| hypothetical protein Pmar_PMAR010017 [Perkinsus marinus ATCC 50983]
Length = 412
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSC-----ARAYLDFKK 62
+KVV+R LPP+IT+ + I G W F G ++ +R YL+F+
Sbjct: 327 SKVVIRLLPPSITEDQLWQSIPEGVKGSIVWRYFVAGSQPKRPTISVPAVNSRCYLEFET 386
Query: 63 PEDVLEFAEFFNGHVFVNEK 82
+ +F F+GH FV+++
Sbjct: 387 KQQAFDFVNSFHGHKFVDQE 406
>gi|409047217|gb|EKM56696.1| hypothetical protein PHACADRAFT_160215 [Phanerochaete carnosa
HHB-10118-sp]
Length = 475
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQ---KHQSCARAYLDFK 61
+R K VVR LPP + + F + + W + QGK + K +RAY+ FK
Sbjct: 41 ERLKTVVRRLPPNLPEDVFWQSVQRWVSDETVIWKEYHQGKFKKRLNKENIPSRAYIAFK 100
Query: 62 KPEDVLEFAEFFNGHVFVNEKGVQFKTIVE 91
E + F+ ++GHVF ++ + + +E
Sbjct: 101 DEETLATFSREYDGHVFRDKADEDYISFLE 130
>gi|149245801|ref|XP_001527377.1| hypothetical protein LELG_02206 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449771|gb|EDK44027.1| hypothetical protein LELG_02206 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 418
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWV---SFRQGKTSQKHQSC---ARAYLDFKK 62
K+VVR LPPA+++ F Q++G + + N + + +G QK +RAY+ FK
Sbjct: 49 KLVVRLLPPALSESDFLTQLEGLYPQKENKIVRHYYVKGSYPQKPFELPVYSRAYVSFKN 108
Query: 63 PEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQR-------------VPKQWSKKDGRE 109
D+ EF F +EK I+E + Q+ V K+ +D R+
Sbjct: 109 VADMNEFTGLVRDKSFHDEKDSTI-PIIEKSLFQKMIDGRQINTSGAIVNKRNKGRDKRK 167
Query: 110 GTLLKDPE-YLEFLEFIS 126
L+D + Y FL+F++
Sbjct: 168 AVPLEDDDIYQRFLQFLN 185
>gi|367013556|ref|XP_003681278.1| hypothetical protein TDEL_0D04830 [Torulaspora delbrueckii]
gi|359748938|emb|CCE92067.1| hypothetical protein TDEL_0D04830 [Torulaspora delbrueckii]
Length = 365
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFG-----GRYNWVSFRQGKTSQKHQS---CARAYLD 59
K+V+R LPP ++Q F E I G G W R G QK + +R YL
Sbjct: 65 VKLVLRLLPPDLSQDQFLETIKPEVGEFSDCGVLEWYYVR-GHYPQKLSTRPVYSRCYLI 123
Query: 60 FKKPEDVLEFAEFFNGHVFVNEKG------VQFKTIVE-YAPSQRVPKQWSKKDGREGTL 112
F+ E + EF + FV++K + T V+ + P+ P S EGT+
Sbjct: 124 FESTESLAEFTKKVQPIKFVDDKDNATNVVTRVSTYVKRFVPNTVDPSPVSA--ALEGTI 181
Query: 113 LKDPEYLEFL 122
+DP +L F+
Sbjct: 182 TEDPLFLTFM 191
>gi|290994230|ref|XP_002679735.1| predicted protein [Naegleria gruberi]
gi|284093353|gb|EFC46991.1| predicted protein [Naegleria gruberi]
Length = 450
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 90 VEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKP 128
+EY P Q VPK KKD R+GT+ KD YL FLE + +P
Sbjct: 309 IEYCPLQMVPKP-KKKDPRDGTIFKDEHYLRFLEQLKQP 346
>gi|440294077|gb|ELP87098.1| hypothetical protein EIN_495530 [Entamoeba invadens IP1]
Length = 122
Score = 44.7 bits (104), Expect = 0.13, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPED 65
++ K++++N+P + + + ++G F + ++ F Q + C+ A + F +
Sbjct: 7 NKRKIIIKNIPTSNGKEIADDMVEG-FQDQIDYYDF---IAPQDNLFCS-AIVHFTSDDA 61
Query: 66 VLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFI 125
+ +F ++ HV G + K +E+ +QR+ Q K+D TL DPEY++FLE +
Sbjct: 62 LNKFNSKYSNHVCFLPGGQEKKISIEFCVNQRISTQ-DKEDTLNNTLQDDPEYIKFLETL 120
Query: 126 SK 127
K
Sbjct: 121 KK 122
>gi|109730711|gb|AAI17770.1| Upf3b protein [Mus musculus]
gi|109734450|gb|AAI17771.1| Upf3b protein [Mus musculus]
Length = 248
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R LPP +T+ E + +++ F TS ARAY++FK ED+L
Sbjct: 51 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIL 108
Query: 68 EF 69
F
Sbjct: 109 LF 110
>gi|452822479|gb|EME29498.1| hypothetical protein Gasu_31370 [Galdieria sulphuraria]
Length = 342
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYN---WVSFRQGKTSQKHQSCAR-----AYLD 59
KV VRNLPP+ ++ F + A G ++ W F G + + ++ + AYL
Sbjct: 110 VKVWVRNLPPSYSEDDFHMAFESA-GHSFSLVAWCQFYPGCPASRKETLSSAKKGFAYLA 168
Query: 60 FKKPEDVLEFAEFFNGHVFVN-EKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEY 118
F+ ED L F + ++G + GV++ V A +VP ++ +D T+ +D ++
Sbjct: 169 FQSLEDALGFEKEYSGLKLKDTNNGVEYGIRVFRALFPKVPSKFRCRDSCVATIFEDADF 228
Query: 119 LEFLE 123
F E
Sbjct: 229 RRFEE 233
>gi|392332738|ref|XP_003752678.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B-like [Rattus norvegicus]
Length = 420
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R L P + + E++ Y++V T Q RAY++FK D+L
Sbjct: 75 SKVVIRRLTPTLXKEQVXEKLQPM--PEYDYVELLSNDTILYPQMYGRAYINFKNXRDIL 132
Query: 68 EFAEFFNGHVFVNEK 82
F F+ +VF + K
Sbjct: 133 LFRNQFDDYVFFDNK 147
>gi|392352664|ref|XP_003751279.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B-like [Rattus norvegicus]
Length = 408
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVL 67
+KVV+R L P + + E++ Y++V T Q RAY++FK D+L
Sbjct: 63 SKVVIRRLTPTLXKEQVXEKLQPM--PEYDYVELLSNDTILYPQMYGRAYINFKNXRDIL 120
Query: 68 EFAEFFNGHVFVNEK 82
F F+ +VF + K
Sbjct: 121 LFRNQFDDYVFFDNK 135
>gi|444321012|ref|XP_004181162.1| hypothetical protein TBLA_0F01000 [Tetrapisispora blattae CBS 6284]
gi|387514206|emb|CCH61643.1| hypothetical protein TBLA_0F01000 [Tetrapisispora blattae CBS 6284]
Length = 473
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGG----RYNWVS--FRQGKTSQK--HQSC-ARAYLD 59
K+VVR LPP +T+ F E I+ A G ++N + QG+++ H +RAY
Sbjct: 177 KLVVRLLPPNLTEEQFIETIEPALGKDFKEKFNIFQSYYVQGESNSTPFHGPVHSRAYFI 236
Query: 60 FKKPEDVLEFAEFFNGHVFVNEK----------GVQFKTIVEYAPSQRVPKQWSKKDGRE 109
+ ED+ + E F+++K K +V+ + + P + + K G E
Sbjct: 237 LENMEDLKKLGEIIQKLEFIDDKDNLTRASLLLSPYVKDLVDESLLIKKPSKANSKVG-E 295
Query: 110 GTLLKDPEYLEFL 122
GTL DP + FL
Sbjct: 296 GTLQNDPLFKTFL 308
>gi|260950181|ref|XP_002619387.1| predicted protein [Clavispora lusitaniae ATCC 42720]
gi|238846959|gb|EEQ36423.1| predicted protein [Clavispora lusitaniae ATCC 42720]
Length = 366
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 29/156 (18%)
Query: 9 KVVVRNLPPAITQPAFTEQ---IDGAFGGRYNWVSFRQGKTSQKHQS-----CARAYLDF 60
KVVVR LPP++ + F Q + A G W F + S+ Q+ C+RAY F
Sbjct: 39 KVVVRLLPPSLKEEDFLAQAKALCPALGTELAWTRFFYMRGSRNVQAFEEPICSRAYFLF 98
Query: 61 KKPEDVLEFAEFFNGHVFVN-EKGVQ---------FKTIVEYAPSQRVPKQWSKKDGREG 110
E EF +G F+ E G F ++ + P+ + G
Sbjct: 99 PTKETADEFKRQISGASFLEPESGDHYSAQTMKPIFGSVTQVEPATSL-----------G 147
Query: 111 TLLKDPEYLEFLEFISKPVENLPSAEIQLERREAER 146
++KD +++F+ + +N+ + + E RE +R
Sbjct: 148 DIIKDSLFIKFMASYAAKTKNIDLSALLSEIREQKR 183
>gi|330806113|ref|XP_003291018.1| hypothetical protein DICPUDRAFT_81715 [Dictyostelium purpureum]
gi|325078815|gb|EGC32446.1| hypothetical protein DICPUDRAFT_81715 [Dictyostelium purpureum]
Length = 326
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 5 LDRTKVV--VRNLPPAITQPAFTEQIDGAFGGR-YNWVSFRQGKTSQKHQSCARAYLDF- 60
+D+ +VV +RNLP + + F+ I AF + + QGK K + R Y+
Sbjct: 1 MDKREVVYVIRNLPYNLEKEKFSLSISTAFSEETIKIIEYIQGKKGSKDITPTRCYVKIF 60
Query: 61 ----KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDP 116
K D F +F +G FVN KG+ + VE P +Q +K++ GTL
Sbjct: 61 NKVGSKSSDA--FLDFMDGKSFVNNKGLDEQCSVENVPFFLNAEQ-TKRNTSMGTLESSK 117
Query: 117 EYLEFLEFISKPVENLPSAEIQ 138
+ FL+ + P +++ + +I+
Sbjct: 118 TFQSFLKQLELPTDSVQNFDIK 139
>gi|448085816|ref|XP_004195953.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
gi|359377375|emb|CCE85758.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
Length = 320
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 16/158 (10%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQID--------GAFGGRYNWVSFRQGKTSQKHQSCARAY 57
++ K+ VR LP A+T FT Q+D G Y +V K+ + + +RAY
Sbjct: 20 EKLKLTVRLLPAALTWEQFTSQLDKYTDIRSKGGVTNEY-YVQGFYPKSPYELPTFSRAY 78
Query: 58 LDFKKPEDVLEFAEFFNGHVFVNEK-GVQFKTIVEYAPSQRVPKQWSK--KDGREGTLLK 114
L FK + EF E F+ EK G Q +E A ++P SK K G + + K
Sbjct: 79 LLFKNSSLMREFIEQVKDKPFIEEKTGNQMAPQLEKALYSKMPTPESKLSKPGNKA-IEK 137
Query: 115 DPEYLEFLEFISK--PVENLP-SAEIQLERREAERAGA 149
D + EFL + + P + L S I+ RE ++ GA
Sbjct: 138 DHIFKEFLACLEEGTPFDLLEISHRIRSNAREKKKNGA 175
>gi|388581361|gb|EIM21670.1| hypothetical protein WALSEDRAFT_11010, partial [Wallemia sebi CBS
633.66]
Length = 62
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 53 CARAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTL 112
+RAY+ FK+ +L F F+GH+ + + +E+AP QR P+ K+D R+GT+
Sbjct: 6 ASRAYITFKEYAQLLSFHAGFDGHL-------ESRASIEFAPYQRTPQPKQKQDQRQGTI 58
>gi|241950067|ref|XP_002417756.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223641094|emb|CAX45469.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 472
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 29/167 (17%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFG------GRYNWVSFRQGKTSQKHQSCARAYLDFKK 62
K V+R LPP++T+ F Q+ + ++ ++ KT+ + +RAY++F
Sbjct: 64 KFVIRLLPPSLTESDFLNQLATYYPYHASKICQFYYIQGHYPKTNFEIPIYSRAYINFSN 123
Query: 63 PEDVLEFAEF---------FNGHVFVNEKGVQFKTI-----------VEYAPSQRVPKQW 102
D LEF F F+ + + EK + K + + SQ++ K+
Sbjct: 124 YNDSLEFLNFLKDKSFEDEFDSIIPMIEKSLFHKMVNTTTTTTSSSSGDVNSSQKILKE- 182
Query: 103 SKKDGREGTLLKDPEYLEFLEFISKPVENLPSAEIQ--LERREAERA 147
SKK+ + L+ + Y +FL FI+ ++ +I ++R+++ ++
Sbjct: 183 SKKNLKRDDLMNNEIYKKFLMFINNEIDQFDLIKINKSIKRKQSTKS 229
>gi|448081335|ref|XP_004194864.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
gi|359376286|emb|CCE86868.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
Length = 321
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFGGRYN-------WVSFRQGKTSQKHQSCARAYL 58
++ K+ VR LP A+T FT Q++ R N +V K+ + S +RAYL
Sbjct: 20 EKLKLTVRLLPAALTWEQFTSQLEKYTDIRSNGGITNEYYVQGFYPKSPYELPSFSRAYL 79
Query: 59 DFKKPEDVLEFAEFFNGHVFVNEK-GVQFKTIVEYAPSQRVPKQWSK-KDGREGTLLKDP 116
FK + +F E FV EK G Q +E A ++P SK + + KD
Sbjct: 80 LFKNTALMRQFIEQVKDKPFVEEKTGNQMMPQLEKALYSKMPTPESKLQKPANKPIEKDH 139
Query: 117 EYLEFLEFIS--KPVENLPSAE-IQLERREAERAGAA 150
+ EFL + KP + L +++ I+ RE ++ GA+
Sbjct: 140 IFKEFLACLEDGKPFDLLETSQRIRTSAREKKKNGAS 176
>gi|302419035|ref|XP_003007348.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352999|gb|EEY15427.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 593
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 55 RAYLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIV------EYAPSQRVPKQWSKKDGR 108
R YL KK E + E E + + K + EY +++P + D R
Sbjct: 55 RLYLHVKKRESLAELDEIVQTRTWEDAKLTHNNPCLVGPPSLEYCIYKKIPGARKRSDAR 114
Query: 109 EGTLLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAK--EALIVTPLMDFVRQ 165
+GT+ +DPE++ +L ++ P E + E E AG +K + TPL++++++
Sbjct: 115 QGTIDQDPEFMSYLLSLTN-----PETEKEGETGEDPSAGESKPDTKVTTTPLIEYIKE 168
>gi|150863913|ref|XP_001382558.2| hypothetical protein PICST_67017 [Scheffersomyces stipitis CBS
6054]
gi|149385169|gb|ABN64529.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 453
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGGRYNWVS---FRQGKTSQKHQSC---ARAYLDFKK 62
KVV+R LPP + + F +Q+ + ++ + +G K +RAY+ F
Sbjct: 47 KVVLRLLPPTLDENGFYDQLSAFYDVNSPNITSKYYVKGSYPAKPFEAPIYSRAYITFHT 106
Query: 63 PEDVLEFAEFFNGHVFVN-EKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPE---- 117
+DV+ F NG FV E F +VE A ++P KDG+E ++ +
Sbjct: 107 SDDVVFFMSSVNGKPFVEPETEDSFTPLVERAIFNKMP----AKDGKEESITEKSSVEGS 162
Query: 118 --YLEFLEFIS 126
+ EF++F++
Sbjct: 163 ELFQEFVKFLN 173
>gi|410077329|ref|XP_003956246.1| hypothetical protein KAFR_0C01160 [Kazachstania africana CBS 2517]
gi|372462830|emb|CCF57111.1| hypothetical protein KAFR_0C01160 [Kazachstania africana CBS 2517]
Length = 396
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 6 DRTKVVVRNLPPAITQPAFTEQIDGAFG----GRYNWVSFR--QGKTSQKH---QSCARA 56
D K+V+R LPP IT+ +F + I+ G ++ F +G S K + +RA
Sbjct: 93 DEFKLVMRLLPPNITEQSFKKTIEAVLGEDMFAKWKITDFYYVKGHYSSKLFTPPTYSRA 152
Query: 57 YLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPSQRVPK----QWSKKDGREGTL 112
YL F+ E++ +F++ + FV+++ T ++ S V K Q + K EGTL
Sbjct: 153 YLTFQTMENLNDFSQKCHKISFVDDRDNA--TTAKFKISFYVKKLNNNQHNPKLNMEGTL 210
Query: 113 LKDPEYLEFL 122
D + F+
Sbjct: 211 ENDELFKNFM 220
>gi|66801645|ref|XP_629748.1| hypothetical protein DDB_G0292240 [Dictyostelium discoideum AX4]
gi|60463136|gb|EAL61330.1| hypothetical protein DDB_G0292240 [Dictyostelium discoideum AX4]
Length = 358
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 11 VVRNLPPAITQPAFTEQIDGAFG-GRYNWVSFRQGKTSQKHQSCARAYLDFKKPEDVLEF 69
V+RNLP + Q F I ++ + + QG S F
Sbjct: 8 VIRNLPWNLEQEKFQALIATSYSPDTVKIIEYNQGTKSSDS------------------F 49
Query: 70 AEFFNGHVFVNEKGVQFKTIVEYAPSQRVPKQWSKKDGREGTLLKDPEYLEFLEFISKPV 129
EF + FVN KG++ IVE AP ++ KK+ R GT+ Y FL+ + P
Sbjct: 50 LEFMDNRPFVNNKGIEELAIVESAPF-KIDTTQVKKNNRMGTIESSGTYQAFLKQLDAPT 108
Query: 130 ENLPSAEIQLERRE 143
+++ + + E+ E
Sbjct: 109 DSVQNFNVPKEQTE 122
>gi|326433499|gb|EGD79069.1| hypothetical protein PTSG_02037 [Salpingoeca sp. ATCC 50818]
Length = 5390
Score = 39.3 bits (90), Expect = 4.6, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 112 LLKDPEYLEFLEFISKPVENLPSAEIQLERREAERAGAAKEAL-----IVTPLMDFVRQK 166
++KD + E + + + VE S + R A RA E + ++ L VR +
Sbjct: 4136 MVKDMDVEELKQSLREMVETSASLTASQQERMAARASKESELIDRVNVLLKRLGSRVRVE 4195
Query: 167 RAAKAGPRRL--------LSNGKLSRRASGSSTGSP-ASGSSKRGSDKKKASTTMYVLRD 217
A A P + L+ G +RR SG+ G+ +SGSSK GSD ++ V D
Sbjct: 4196 DALAATPASVGKQRSGDALAAG--ARRRSGAGAGAMLSSGSSKAGSDAASPASPTAVSGD 4253
Query: 218 TAKNSSGKDK---STYILVPKRDDQ 239
+ SGK + ST L+ KR+ Q
Sbjct: 4254 EEGDDSGKQELMVSTQRLLAKREQQ 4278
>gi|255712613|ref|XP_002552589.1| KLTH0C08426p [Lachancea thermotolerans]
gi|238933968|emb|CAR22151.1| KLTH0C08426p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 9 KVVVRNLPPAITQPAFTEQIDGAFGG---------RYNWVSFRQGKTSQK---HQSCARA 56
K+V+R LPP + + F + + A G RY F +G S+K + +RA
Sbjct: 66 KLVLRQLPPNLMEEQFFDTVSAAVGSDFLQQHVEDRY----FFKGHFSRKPFKLPTYSRA 121
Query: 57 YLDFKKPEDVLEFAEFFNGHVFVNEKGVQFKTIVEYAPS-QRVPKQWSK-----KDGREG 110
Y+ F + E + FA+ + FV++ V +P +++ + SK KD EG
Sbjct: 122 YMTFNEAEKLQFFAKSVSAVTFVDDTNNSMVPTVTLSPYLKKLRTEESKGLRKTKDLIEG 181
Query: 111 TLLKDPEYLEFL 122
T+ +D + FL
Sbjct: 182 TIEQDRTFQTFL 193
>gi|254578402|ref|XP_002495187.1| ZYRO0B05412p [Zygosaccharomyces rouxii]
gi|238938077|emb|CAR26254.1| ZYRO0B05412p [Zygosaccharomyces rouxii]
Length = 351
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 8 TKVVVRNLPPAITQPAFTEQIDGAFGGRYNWVSFR----QGKTSQK---HQSCARAYLDF 60
K+++R LPP +T+ F E + G +W R QG + K +R Y F
Sbjct: 67 VKLILRLLPPTLTKDQFLETLKPVVGDLSSWQLLRWYYVQGYYTSKIFAEPVYSRCYFIF 126
Query: 61 KKPEDVLEFAEFFNGHVFVNEKGVQFKTIVE-------YAPSQRVPKQWSKKDGREGTLL 113
+ + FA+ FV++K K +++ Y R P + S + EG+L
Sbjct: 127 SNMDQLKHFAQLVEPLTFVDDKDNSAKAVLKLSSYCESYDDDNRKPSRSS--EALEGSLD 184
Query: 114 KDPEYLEFL 122
+D + F+
Sbjct: 185 QDIFFQTFM 193
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.309 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,182,002,690
Number of Sequences: 23463169
Number of extensions: 355483821
Number of successful extensions: 920540
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 1175
Number of HSP's that attempted gapping in prelim test: 914620
Number of HSP's gapped (non-prelim): 4990
length of query: 514
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 367
effective length of database: 8,910,109,524
effective search space: 3270010195308
effective search space used: 3270010195308
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)