BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010225
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 355 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 409
DA+ S + FE+ R V +E V S H A+++ + RV L GDAAHT+ P
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
G G+N G G A+ L +A + A G LL YE ER+P I +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 355 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 409
DA+ S + FE+ R V +E V S H A+++ + RV L GDAAHT+ P
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
G G+N G G A+ L +A + A G LL YE ER+P I +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 79/217 (36%), Gaps = 42/217 (19%)
Query: 240 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-NKENYCAWQRFLPAGPIALLPIGDN 298
VG DGG+S VR LA + G + A+I V +E W+R
Sbjct: 200 VGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPEREVPRRWER--------------- 244
Query: 299 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG---SVDMFSWFRGD 355
D + +L + G GP S S+G + D D
Sbjct: 245 --------------------TPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLED 284
Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
+ P + + S F + + A Y S RV+L GDAAH P+ GQG+N
Sbjct: 285 LGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNT 344
Query: 416 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452
G DA L +A + G LL Y ER P
Sbjct: 345 GLQDAVNLGWKLAARV---RGWGSEELLDTYHDERHP 378
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 83/217 (38%), Gaps = 39/217 (17%)
Query: 239 LVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDN 298
+VG DGG+S VR+ AGF G S S+ + + + +P G + P+GD
Sbjct: 158 VVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPLGMVMSAPLGDG 217
Query: 299 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP-KSISSGSVDMFSWFRGDAT 357
I+ A GP P + +++ +W R
Sbjct: 218 VDRIIVCERGAPARRRT-------------------GPPPYQEVAA------AWQR---- 248
Query: 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF 417
L+ ++ P V F + + Y RV+L GD+AH P GQG+N+
Sbjct: 249 LTGQDISHGEPVWVS------AFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSV 302
Query: 418 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 454
D+ L +A AV + A LL Y ER P
Sbjct: 303 QDSVNLGWKLA---AVVSGRAPAGLLDTYHEERHPVG 336
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
+ +L L G L A L VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKAETTK-LDSWTRGKVALV 286
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 112/279 (40%), Gaps = 49/279 (17%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
+ +L L G L A L VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFE-VPPRVVKLASERMVF--PLSLKHANNYVSKRV 395
+ SS +D+ W E F + P +++ A + +++ +V
Sbjct: 234 RG-SSVPIDLEVWV---------EMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKV 283
Query: 396 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 455
L+GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 284 ALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITD 337
Query: 456 VMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 338 RCQALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 265 KELIHATLSFVGLATR--IFPLE----KPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 318
Query: 418 GDASTLSRIIAEG 430
DA LS +A+G
Sbjct: 319 VDALILSDNLADG 331
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 418 GDASTLSRIIAEG 430
DA LS +A+G
Sbjct: 339 VDALILSDNLADG 351
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 418 GDASTLSRIIAEG 430
DA LS +A+G
Sbjct: 339 VDALILSDNLADG 351
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
+ +L L G L A L VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 286
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 418 GDASTLSRIIAEG 430
DA LS +A+G
Sbjct: 339 VDALILSDNLADG 351
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
+ +L L G L A L VGADG S+VR+ GFK W I V K+ +
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 231
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 232 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 269
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 270 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 323 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 409
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
KE V LA+ +FPL + SKR + IGDAAH P AGQGVN G
Sbjct: 265 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 318
Query: 418 GDASTLSRIIAEG 430
DA LS +A+G
Sbjct: 319 VDALILSDNLADG 331
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 417
KE V LA+ +FPL + SKR + IGDAAH P AGQGVN G
Sbjct: 286 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 339
Query: 418 GDASTLSRIIAEG 430
DA LS +A+G
Sbjct: 340 VDALILSDNLADG 352
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL+
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLTSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 82/218 (37%), Gaps = 45/218 (20%)
Query: 237 AKLVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG 296
A LVG DGG+S VR+ AGF G + + + ++ + LP G + + P+
Sbjct: 155 AYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLPGGMVMVGPLP 214
Query: 297 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF-SWFRGD 355
+ I+ + G P + ++ +W R
Sbjct: 215 GGITRII-------------------------VCERGTPPQRRETPPSWHEVADAWKR-- 247
Query: 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 415
L+ + P V F + + Y RV+L GD+AH P GQG+N
Sbjct: 248 --LTGDDIAHAEPVWVS------AFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNT 299
Query: 416 GFGDASTLSRIIAEGIAVGADI-GEAS--LLKKYEAER 450
DA L G +GA + G A+ LL Y +ER
Sbjct: 300 SIQDAVNL------GWKLGAVVNGTATEELLDSYHSER 331
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 334
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 335 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 393
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 24/178 (13%)
Query: 276 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDD---FVKILNHALD 331
E ++R P G + LL S+ +++ +P+ + C + FV++
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYFVQV------ 225
Query: 332 YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNY 390
P + + S + F W L A+ EV ++V S E+ + PL
Sbjct: 226 ----PLSEKVEDWSDERF-W----TELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPM 276
Query: 391 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 277 QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 108/276 (39%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
+ +L L G L A L VGADG S+VR+ GFK W I V K+ +
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRXKKELGHGE 231
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
W DN + W P+ S NE++ ++ + A D P
Sbjct: 232 W---------------DNTID-XWNFWPRVQRILYSPCNENELYLGLXAPAAD------P 269
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 270 RG-SSVPIDLEVWVEXFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
GDAAH P QG +A +LS+ + EG +V L +E +P
Sbjct: 323 GDAAHAXCPALAQGAGCAXVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
A+ + S+ G N AA A+Y PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NXFTPAALEAARY-DPLRR 409
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 380 FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE 439
P+ + + Y + V ++GDA H VHP+ GQG+NL DAS L+ + + + +
Sbjct: 273 IPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALED 332
Query: 440 ASLLKKYEAERKPAN 454
A L Y+AER P N
Sbjct: 333 A--LAGYQAERFPVN 345
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 90/240 (37%), Gaps = 46/240 (19%)
Query: 239 LVGADGGKSRVRELAGFKTTG------WSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 292
++G DGG S VR GF+ G W +A+ + + + CA +G I +
Sbjct: 222 VIGCDGGHSWVRRTLGFEMIGEQTDYIWGV-LDAVPASNFPDIRSRCAIHS-AESGSIMI 279
Query: 293 LPIGDNFSNIVWTMNPKDASDCKSMNEDDF---VKILNHALDYGYGPHPKSISSGSVDMF 349
+P +N + + A ++ F V I N + HP + +D F
Sbjct: 280 IPRENNLVRFYVQLQAR-AEKGGRVDRTKFTPEVVIANAKKIF----HPYTFDVQQLDWF 334
Query: 350 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLA 409
+ + + RV + S+ +RV + GDA HT P A
Sbjct: 335 T------------AYHIGQRVTEKFSK---------------DERVFIAGDACHTHSPKA 367
Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 469
GQG+N D L + V + +LK YE ER+P ++ F + +S
Sbjct: 368 GQGMNTSMMDTYNLGWKLG---LVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFS 424
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP- 452
R+ L+GDAAH ++P+ G + D L A +A AD+ A+ L++YE R+P
Sbjct: 304 RITLLGDAAHLMYPMGANGASQAILDGIEL----AAALARNADV--AAALREYEEARRPT 357
Query: 453 ANIVMMA 459
AN +++A
Sbjct: 358 ANKIILA 364
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 358 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 416
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G++L
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLDLA 302
Query: 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP- 452
R+ L+GDAAH +P G + D L A +A AD+ A+ L++YE R+P
Sbjct: 304 RITLLGDAAHLXYPXGANGASQAILDGIEL----AAALARNADV--AAALREYEEARRPT 357
Query: 453 ANIVMMA 459
AN +++A
Sbjct: 358 ANKIILA 364
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 88/240 (36%), Gaps = 46/240 (19%)
Query: 239 LVGADGGKSRVRELAGFKTTG------WSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 292
++G DGG S VR GF+ G W +A+ + + + CA +G I +
Sbjct: 221 VIGCDGGHSWVRRTLGFEMIGEQTDYIWGV-LDAVPASNFPDIRSRCAIHS-AESGSIMI 278
Query: 293 LPIGDNFSNIVWTMNPKDASDCKSMNEDDF---VKILNHALDYGYGPHPKSISSGSVDMF 349
+P +N + + A ++ F V I N + HP + +D F
Sbjct: 279 IPRENNLVRFYVQLQAR-AEKGGRVDRTKFTPEVVIANAKKIF----HPYTFDVQQLDWF 333
Query: 350 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLA 409
+ + + RV + S+ +RV + GDA HT P A
Sbjct: 334 T------------AYHIGQRVTEKFSK---------------DERVFIAGDACHTHSPKA 366
Query: 410 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 469
GQG+N D L + V + +LK YE ER ++ F + +S
Sbjct: 367 GQGMNTSMMDTYNLGWKLG---LVLTGRAKRDILKTYEEERHAFAQALIDFDHQFSRLFS 423
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 388 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 447
+ V RV L+GDA H+ P GQG DA L + + + A+ L++YE
Sbjct: 296 SRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTRDI------AAALREYE 349
Query: 448 AER 450
A+R
Sbjct: 350 AQR 352
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 453
RV + GDA HT P AGQG+N D+ L +A AV LL Y +ER+
Sbjct: 343 RVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLA---AVLRKQCAPELLHTYSSERQ-- 397
Query: 454 NIVMMAVLDGFQKAYSVDF 472
+V ++D F + ++ F
Sbjct: 398 -VVAQQLID-FDREWAKMF 414
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 87/223 (39%), Gaps = 37/223 (16%)
Query: 226 KLDLSDGTSLYAK-LVGADGGKSRVRE-LAGFKTTGWSY-SQNAIICTVEHNKENYCAWQ 282
++ SDGT A ++GADGG S VR+ L G + T Y + ++ E + W
Sbjct: 131 QMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVLQPGEVADD---VWN 187
Query: 283 RF--------LPAGPIALLPIGDNFS------NIVWTMNPKDASDCKSMNED-DFVKILN 327
F L G + PI + N W N + D + D +++
Sbjct: 188 YFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPT 247
Query: 328 HALDYGYGPHP-KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKH 386
+ PH + S +F FR D L+A F V + ++ V
Sbjct: 248 SVHNNSLNPHNLRQFHSKGESLFKPFR-DLVLNASSPF------VTVVADATV------- 293
Query: 387 ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 429
+ V RV+LIGDAA T P A G DA TL+ + +
Sbjct: 294 -DRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK 335
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 388 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 447
+ V RV L+GDA H+ P GQG DA L + + + A+ L++YE
Sbjct: 296 SRLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVLGAVFRQTRDI------AAALREYE 349
Query: 448 AER 450
A+R
Sbjct: 350 AQR 352
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 112/276 (40%), Gaps = 43/276 (15%)
Query: 224 LAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 280
+ +L L G L A L VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 281 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 338
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 339 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 398
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 286
Query: 399 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 458
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 287 GDAAHAMAPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 459 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 494
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 370 VVKLASERMVFPLSLK---HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRI 426
+V+ + + PL L+ H + S V L+GDA H P G G N DA L++
Sbjct: 285 LVQQSDXENISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRDALLLTQK 344
Query: 427 IAEGIAVGADIGEASLLKKYEAE-RKPANIVMMAVLDGFQKA 467
+A + ++ +A + YE + R AN ++ L Q A
Sbjct: 345 LASVASGHEELVKA--ISDYEQQXRAYANEIVGISLRSAQNA 384
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 256 KTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCK 315
KT + +NA++ +EHN +N+C + +P P +++ + D + +
Sbjct: 221 KTLHAIFKRNAVLNMLEHNYKNWCTLNKQVPVN----FPFKKYCLDVLEHL---DMCEKR 273
Query: 316 SMN--EDDFVKIL 326
S+N E+DF+K+L
Sbjct: 274 SINLDENDFLKLL 286
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
T F E G + +++ + + TG+ K R + E L E+ V+
Sbjct: 273 GTFEFLYENGRFYFIEMNTRVQVEHPVSEMVTGVDIVKEMLRIASGEKLSIRQEDVVIRG 332
Query: 176 SLLSCMQNTEFQKTIYPS 193
L C N E KT PS
Sbjct: 333 HALECRINAEDPKTFMPS 350
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 240 VGADGGKSRVRELAGFKTTG-------WSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 292
+ DG + +E F T G W Y+ +A +E E + W R + P L
Sbjct: 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 217
Query: 293 L-----PIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHA 329
L + + + I+WT + + K+ + E+ F +L A
Sbjct: 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 460
A TLS+++ G +G I E +LKK +++P + A+
Sbjct: 242 AGTLSKVLGTGFRIGWIIAEGEILKKVLMQKQPIDFCAPAI 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,048,856
Number of Sequences: 62578
Number of extensions: 557296
Number of successful extensions: 1210
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 73
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)