Query 010225
Match_columns 514
No_of_seqs 230 out of 2731
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 22:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08013 oxidoreductase; Provi 100.0 5.1E-52 1.1E-56 425.4 45.6 394 55-510 3-399 (400)
2 PRK08850 2-octaprenyl-6-methox 100.0 9.5E-52 2.1E-56 424.5 44.5 393 54-510 3-400 (405)
3 PRK05714 2-octaprenyl-3-methyl 100.0 2E-51 4.2E-56 422.5 43.9 396 55-511 2-404 (405)
4 PRK08773 2-octaprenyl-3-methyl 100.0 5.4E-51 1.2E-55 417.4 44.7 389 51-503 2-392 (392)
5 PRK06617 2-octaprenyl-6-methox 100.0 1.4E-50 2.9E-55 411.2 42.7 369 56-503 2-373 (374)
6 TIGR01989 COQ6 Ubiquinone bios 100.0 1.9E-50 4.1E-55 417.9 44.0 426 56-497 1-437 (437)
7 PRK07364 2-octaprenyl-6-methox 100.0 1.8E-49 3.8E-54 409.7 45.5 393 52-511 15-413 (415)
8 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.4E-49 5.1E-54 403.5 42.7 380 55-504 2-386 (387)
9 PRK08849 2-octaprenyl-3-methyl 100.0 5.1E-49 1.1E-53 401.2 44.7 380 55-503 3-384 (384)
10 PRK07333 2-octaprenyl-6-methox 100.0 1.3E-48 2.8E-53 401.8 45.4 391 56-512 2-400 (403)
11 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.3E-48 4.9E-53 398.1 45.4 387 53-503 3-391 (391)
12 PRK07494 2-octaprenyl-6-methox 100.0 1.1E-48 2.3E-53 400.2 42.1 380 51-504 3-388 (388)
13 PRK06996 hypothetical protein; 100.0 2.1E-47 4.5E-52 391.1 44.4 378 51-501 7-393 (398)
14 PRK09126 hypothetical protein; 100.0 7.8E-48 1.7E-52 394.4 40.9 388 54-504 2-391 (392)
15 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.8E-47 1.3E-51 387.3 44.6 383 57-502 1-385 (385)
16 PRK06185 hypothetical protein; 100.0 4.9E-47 1.1E-51 390.4 36.2 382 51-500 2-391 (407)
17 PRK05732 2-octaprenyl-6-methox 100.0 6.8E-46 1.5E-50 380.6 44.6 389 54-503 2-392 (395)
18 TIGR01984 UbiH 2-polyprenyl-6- 100.0 5.7E-46 1.2E-50 379.4 43.4 378 57-502 1-382 (382)
19 PRK07608 ubiquinone biosynthes 100.0 1.3E-45 2.7E-50 377.7 44.6 384 53-502 3-388 (388)
20 KOG3855 Monooxygenase involved 100.0 2.9E-46 6.2E-51 355.8 28.8 434 53-503 34-480 (481)
21 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.5E-43 3.2E-48 375.7 40.2 377 53-504 8-394 (538)
22 PRK08244 hypothetical protein; 100.0 5.3E-43 1.1E-47 368.3 41.0 371 55-504 2-378 (493)
23 PRK06834 hypothetical protein; 100.0 8.8E-43 1.9E-47 363.3 41.1 367 54-504 2-371 (488)
24 PRK07588 hypothetical protein; 100.0 8.9E-43 1.9E-47 356.6 35.9 378 56-505 1-385 (391)
25 PRK07045 putative monooxygenas 100.0 8.3E-42 1.8E-46 349.1 36.6 369 53-486 3-376 (388)
26 PRK08132 FAD-dependent oxidore 100.0 1.2E-40 2.5E-45 354.4 42.8 369 53-497 21-400 (547)
27 PRK08294 phenol 2-monooxygenas 100.0 1.5E-40 3.3E-45 355.5 42.0 353 52-472 29-416 (634)
28 PRK08243 4-hydroxybenzoate 3-m 100.0 2.5E-40 5.5E-45 338.2 39.9 377 55-504 2-389 (392)
29 PRK06184 hypothetical protein; 100.0 8.7E-41 1.9E-45 352.0 37.1 339 54-469 2-353 (502)
30 PRK06753 hypothetical protein; 100.0 4E-41 8.8E-46 342.5 33.1 352 56-487 1-357 (373)
31 PLN02985 squalene monooxygenas 100.0 1E-40 2.3E-45 348.4 34.3 396 51-510 39-444 (514)
32 PRK06475 salicylate hydroxylas 100.0 1.3E-40 2.9E-45 341.2 33.7 352 56-486 3-377 (400)
33 PRK07190 hypothetical protein; 100.0 9.4E-40 2E-44 340.1 40.2 338 53-469 3-348 (487)
34 PRK06847 hypothetical protein; 100.0 7.2E-40 1.6E-44 333.6 37.2 363 54-487 3-373 (375)
35 PRK08163 salicylate hydroxylas 100.0 5.9E-40 1.3E-44 336.6 35.7 357 54-486 3-373 (396)
36 PTZ00367 squalene epoxidase; P 100.0 2.4E-39 5.2E-44 339.4 34.8 402 54-510 32-458 (567)
37 PF01494 FAD_binding_3: FAD bi 100.0 3.8E-40 8.2E-45 332.8 25.7 331 55-460 1-355 (356)
38 PRK05868 hypothetical protein; 100.0 5.4E-39 1.2E-43 325.2 33.4 357 56-484 2-368 (372)
39 PRK06126 hypothetical protein; 100.0 1.2E-38 2.5E-43 339.4 37.5 343 51-469 3-376 (545)
40 PRK07538 hypothetical protein; 100.0 4.3E-38 9.3E-43 324.0 34.4 340 56-463 1-361 (413)
41 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 2.3E-37 5E-42 315.5 38.7 375 55-502 2-387 (390)
42 PRK07236 hypothetical protein; 100.0 6.7E-38 1.4E-42 319.8 31.2 340 53-471 4-378 (386)
43 TIGR03219 salicylate_mono sali 100.0 4.2E-38 9.1E-43 324.3 29.0 348 56-475 1-380 (414)
44 PLN02927 antheraxanthin epoxid 100.0 1.1E-35 2.4E-40 312.9 34.3 368 53-484 79-469 (668)
45 PLN00093 geranylgeranyl diphos 100.0 6.6E-33 1.4E-37 285.4 39.0 336 51-473 35-389 (450)
46 KOG2614 Kynurenine 3-monooxyge 100.0 2.6E-34 5.5E-39 276.9 24.6 350 55-473 2-380 (420)
47 TIGR02023 BchP-ChlP geranylger 100.0 3.9E-31 8.5E-36 269.9 34.6 320 56-471 1-338 (388)
48 TIGR02028 ChlP geranylgeranyl 100.0 3.3E-30 7.1E-35 263.1 37.5 340 56-486 1-359 (398)
49 PRK11445 putative oxidoreducta 100.0 3.8E-30 8.2E-35 258.9 29.9 306 56-454 2-317 (351)
50 TIGR02032 GG-red-SF geranylger 100.0 8.7E-30 1.9E-34 250.5 29.0 285 56-427 1-295 (295)
51 KOG1298 Squalene monooxygenase 100.0 3E-30 6.5E-35 243.8 23.8 397 50-510 40-444 (509)
52 COG0644 FixC Dehydrogenases (f 100.0 8.5E-29 1.8E-33 252.9 35.0 333 54-469 2-340 (396)
53 PRK08255 salicylyl-CoA 5-hydro 100.0 3.6E-29 7.8E-34 274.1 27.3 328 56-471 1-342 (765)
54 PRK10015 oxidoreductase; Provi 100.0 5.8E-28 1.3E-32 248.4 30.5 375 54-500 4-410 (429)
55 PRK10157 putative oxidoreducta 100.0 2.6E-26 5.6E-31 236.5 33.9 341 54-470 4-372 (428)
56 TIGR01790 carotene-cycl lycope 99.9 7.7E-25 1.7E-29 224.0 32.1 302 57-456 1-321 (388)
57 PF04820 Trp_halogenase: Trypt 99.9 2.9E-25 6.3E-30 229.0 28.0 336 57-476 1-394 (454)
58 PLN02697 lycopene epsilon cycl 99.9 1E-22 2.3E-27 211.7 33.2 311 53-461 106-447 (529)
59 PLN02463 lycopene beta cyclase 99.9 8.2E-22 1.8E-26 202.2 32.3 309 52-454 25-364 (447)
60 TIGR01789 lycopene_cycl lycope 99.9 3.8E-20 8.2E-25 186.7 27.6 304 57-464 1-317 (370)
61 PF05834 Lycopene_cycl: Lycope 99.9 5.8E-19 1.3E-23 178.9 30.9 275 57-429 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.8 5.9E-19 1.3E-23 164.9 17.1 243 237-510 2-247 (276)
63 KOG2415 Electron transfer flav 99.7 1.1E-15 2.5E-20 146.7 22.6 369 53-471 74-464 (621)
64 TIGR00292 thiazole biosynthesi 99.5 3.9E-13 8.4E-18 128.0 14.8 145 54-253 20-176 (254)
65 PRK04176 ribulose-1,5-biphosph 99.5 4.2E-13 9.2E-18 128.2 14.7 145 54-254 24-180 (257)
66 TIGR01377 soxA_mon sarcosine o 99.5 2.5E-12 5.3E-17 131.3 21.1 72 166-259 140-213 (380)
67 COG2081 Predicted flavoprotein 99.5 2.5E-13 5.5E-18 131.9 11.1 161 54-248 2-168 (408)
68 COG1635 THI4 Ribulose 1,5-bisp 99.4 2E-12 4.3E-17 115.0 12.1 145 55-253 30-184 (262)
69 PF01266 DAO: FAD dependent ox 99.4 4.1E-12 9E-17 128.1 15.0 69 165-255 141-212 (358)
70 PF01946 Thi4: Thi4 family; PD 99.4 3.3E-12 7.2E-17 114.5 11.3 146 54-253 16-171 (230)
71 PRK11259 solA N-methyltryptoph 99.4 1.3E-10 2.9E-15 118.3 23.5 60 167-248 145-205 (376)
72 PRK13369 glycerol-3-phosphate 99.4 8.6E-11 1.9E-15 123.9 22.7 66 167-253 151-222 (502)
73 PRK11728 hydroxyglutarate oxid 99.3 5.9E-11 1.3E-15 121.6 19.6 69 166-256 144-214 (393)
74 TIGR01373 soxB sarcosine oxida 99.3 1.1E-10 2.3E-15 120.4 21.1 114 167-303 179-294 (407)
75 PRK12266 glpD glycerol-3-phosp 99.3 1.1E-10 2.5E-15 122.9 20.4 61 167-248 151-217 (508)
76 PF03486 HI0933_like: HI0933-l 99.3 1.1E-11 2.4E-16 125.7 11.7 154 56-248 1-167 (409)
77 PRK12409 D-amino acid dehydrog 99.3 4.1E-10 8.9E-15 116.1 22.4 67 168-255 194-267 (410)
78 PRK01747 mnmC bifunctional tRN 99.3 3.1E-10 6.7E-15 123.8 21.8 60 167-248 404-464 (662)
79 COG0579 Predicted dehydrogenas 99.3 1.3E-10 2.7E-15 116.9 17.1 180 54-257 2-222 (429)
80 PRK00711 D-amino acid dehydrog 99.3 3.9E-10 8.4E-15 116.6 19.7 60 167-248 197-258 (416)
81 PRK05192 tRNA uridine 5-carbox 99.2 2.5E-10 5.5E-15 119.5 13.0 155 53-249 2-159 (618)
82 COG3380 Predicted NAD/FAD-depe 99.1 1.7E-09 3.6E-14 99.5 15.7 150 57-243 3-156 (331)
83 PLN02464 glycerol-3-phosphate 99.1 3.1E-09 6.6E-14 114.5 19.6 71 167-255 228-305 (627)
84 PF13738 Pyr_redox_3: Pyridine 99.1 2.1E-10 4.5E-15 106.2 9.1 138 59-249 1-140 (203)
85 PLN02172 flavin-containing mon 99.1 1.1E-09 2.4E-14 113.6 14.0 160 53-248 8-174 (461)
86 PRK05257 malate:quinone oxidor 99.1 8.7E-10 1.9E-14 115.2 12.8 73 165-256 177-256 (494)
87 PTZ00383 malate:quinone oxidor 99.1 2.9E-09 6.2E-14 111.0 16.0 70 166-255 206-282 (497)
88 PRK12416 protoporphyrinogen ox 99.1 8.1E-09 1.8E-13 108.3 19.5 73 57-129 3-82 (463)
89 COG0665 DadA Glycine/D-amino a 99.1 2.5E-08 5.5E-13 101.9 22.3 64 166-250 151-215 (387)
90 KOG2820 FAD-dependent oxidored 99.1 9E-09 1.9E-13 97.6 16.9 176 52-255 4-222 (399)
91 PRK11101 glpA sn-glycerol-3-ph 99.1 1.7E-09 3.7E-14 115.0 13.6 68 167-255 145-220 (546)
92 COG0578 GlpA Glycerol-3-phosph 99.0 7.1E-09 1.5E-13 106.6 17.4 170 52-255 9-234 (532)
93 PLN02661 Putative thiazole syn 99.0 4.3E-09 9.3E-14 103.2 15.1 141 54-249 91-246 (357)
94 TIGR00562 proto_IX_ox protopor 99.0 1.3E-07 2.9E-12 99.1 27.3 75 56-130 3-82 (462)
95 TIGR01320 mal_quin_oxido malat 99.0 5.9E-09 1.3E-13 108.9 16.8 71 166-256 173-250 (483)
96 PF12831 FAD_oxidored: FAD dep 99.0 1.4E-10 2.9E-15 119.9 4.0 152 57-255 1-157 (428)
97 PRK13339 malate:quinone oxidor 99.0 5E-09 1.1E-13 108.8 15.4 73 165-256 178-257 (497)
98 PF01134 GIDA: Glucose inhibit 99.0 3.4E-09 7.4E-14 105.5 13.4 147 57-246 1-151 (392)
99 TIGR03329 Phn_aa_oxid putative 99.0 2E-09 4.4E-14 112.5 12.0 60 166-248 178-238 (460)
100 KOG2853 Possible oxidoreductas 99.0 3.8E-08 8.3E-13 93.2 18.7 201 53-256 84-330 (509)
101 TIGR03364 HpnW_proposed FAD de 99.0 1.8E-09 3.8E-14 109.7 10.4 57 166-248 140-198 (365)
102 KOG1399 Flavin-containing mono 99.0 2.3E-09 5E-14 109.3 10.7 141 53-247 4-153 (448)
103 PRK11883 protoporphyrinogen ox 99.0 2.6E-07 5.7E-12 96.5 26.6 68 57-128 2-76 (451)
104 PRK07233 hypothetical protein; 99.0 1.9E-07 4.2E-12 97.0 24.9 67 57-127 1-72 (434)
105 PLN02612 phytoene desaturase 98.9 8.6E-07 1.9E-11 94.8 28.9 73 53-129 91-169 (567)
106 TIGR00275 flavoprotein, HI0933 98.9 3.6E-09 7.8E-14 108.3 10.4 155 59-247 1-160 (400)
107 TIGR02734 crtI_fam phytoene de 98.9 3.1E-07 6.7E-12 97.3 25.4 63 171-253 219-282 (502)
108 TIGR02730 carot_isom carotene 98.9 3.3E-07 7.1E-12 96.8 25.2 64 171-254 229-293 (493)
109 TIGR01292 TRX_reduct thioredox 98.9 1.2E-08 2.6E-13 100.4 12.1 112 56-248 1-113 (300)
110 PRK08274 tricarballylate dehyd 98.9 1.8E-08 4E-13 105.6 13.6 37 53-93 2-38 (466)
111 COG2072 TrkA Predicted flavopr 98.9 1.4E-08 3.1E-13 104.9 11.7 44 51-98 4-48 (443)
112 PRK06481 fumarate reductase fl 98.9 3.1E-08 6.6E-13 104.6 13.9 40 52-95 58-97 (506)
113 PRK07804 L-aspartate oxidase; 98.8 4.9E-08 1.1E-12 103.8 15.1 40 52-95 13-52 (541)
114 PRK15317 alkyl hydroperoxide r 98.8 2.6E-08 5.5E-13 105.6 12.9 113 53-247 209-322 (517)
115 PLN02576 protoporphyrinogen ox 98.8 1.6E-06 3.4E-11 91.9 26.2 41 54-97 11-51 (496)
116 PLN02568 polyamine oxidase 98.8 1.5E-06 3.3E-11 91.9 24.9 46 52-97 2-48 (539)
117 TIGR00136 gidA glucose-inhibit 98.8 4.4E-08 9.6E-13 102.7 12.7 157 56-253 1-160 (617)
118 TIGR01813 flavo_cyto_c flavocy 98.8 2.5E-08 5.4E-13 103.8 10.9 35 57-95 1-36 (439)
119 PLN02268 probable polyamine ox 98.8 3.2E-06 7E-11 87.9 25.9 67 56-126 1-74 (435)
120 TIGR00551 nadB L-aspartate oxi 98.8 1.3E-07 2.8E-12 99.5 14.7 63 170-251 127-193 (488)
121 PRK05335 tRNA (uracil-5-)-meth 98.7 5.2E-08 1.1E-12 98.0 10.8 122 56-199 3-126 (436)
122 TIGR03140 AhpF alkyl hydropero 98.7 7.2E-08 1.6E-12 102.1 12.4 113 53-247 210-323 (515)
123 COG0492 TrxB Thioredoxin reduc 98.7 8.7E-08 1.9E-12 93.5 11.9 114 54-249 2-117 (305)
124 PF06039 Mqo: Malate:quinone o 98.7 1.3E-07 2.9E-12 94.4 13.2 86 165-269 175-271 (488)
125 PRK07121 hypothetical protein; 98.7 1.3E-07 2.8E-12 99.8 13.4 39 53-95 18-56 (492)
126 COG1232 HemY Protoporphyrinoge 98.7 1.5E-06 3.2E-11 88.5 20.3 71 57-131 2-79 (444)
127 PF00743 FMO-like: Flavin-bind 98.7 7.7E-08 1.7E-12 101.3 11.4 146 56-249 2-152 (531)
128 PLN00128 Succinate dehydrogena 98.7 6.6E-08 1.4E-12 104.2 11.1 39 53-95 48-86 (635)
129 PRK09231 fumarate reductase fl 98.7 1.7E-07 3.8E-12 100.4 13.9 40 54-95 3-42 (582)
130 PF00890 FAD_binding_2: FAD bi 98.7 8.2E-08 1.8E-12 99.3 11.2 60 169-248 139-204 (417)
131 TIGR01176 fum_red_Fp fumarate 98.7 3.3E-07 7.2E-12 98.0 15.8 41 54-96 2-42 (580)
132 TIGR02731 phytoene_desat phyto 98.7 5.8E-06 1.3E-10 86.5 24.5 69 57-129 1-75 (453)
133 TIGR03143 AhpF_homolog putativ 98.7 1.9E-07 4.1E-12 99.7 13.5 113 54-249 3-116 (555)
134 PRK06069 sdhA succinate dehydr 98.7 2.4E-07 5.1E-12 99.5 14.3 41 52-96 2-45 (577)
135 PTZ00139 Succinate dehydrogena 98.7 2.1E-07 4.6E-12 100.3 13.6 39 53-95 27-65 (617)
136 PRK06175 L-aspartate oxidase; 98.7 1.4E-07 3E-12 97.6 11.7 37 54-95 3-39 (433)
137 TIGR01812 sdhA_frdA_Gneg succi 98.6 2.5E-07 5.5E-12 99.3 13.2 35 57-95 1-35 (566)
138 COG1233 Phytoene dehydrogenase 98.6 4.4E-07 9.5E-12 95.3 14.3 39 54-96 2-40 (487)
139 PF13454 NAD_binding_9: FAD-NA 98.6 2.1E-07 4.5E-12 82.2 10.0 142 59-245 1-155 (156)
140 PLN02676 polyamine oxidase 98.6 5.5E-06 1.2E-10 87.0 22.3 42 53-98 24-66 (487)
141 PRK05945 sdhA succinate dehydr 98.6 2.3E-07 5E-12 99.5 12.3 40 54-95 2-41 (575)
142 PRK08401 L-aspartate oxidase; 98.6 1.5E-07 3.2E-12 98.5 10.5 59 171-251 120-179 (466)
143 KOG2852 Possible oxidoreductas 98.6 1.6E-07 3.4E-12 87.3 9.2 176 55-248 10-209 (380)
144 TIGR01424 gluta_reduc_2 glutat 98.6 3.1E-07 6.7E-12 95.7 12.6 34 55-92 2-35 (446)
145 KOG2844 Dimethylglycine dehydr 98.6 2.2E-06 4.9E-11 88.2 18.2 70 166-256 182-253 (856)
146 PRK06452 sdhA succinate dehydr 98.6 6.1E-07 1.3E-11 96.0 14.5 38 54-95 4-41 (566)
147 PLN02487 zeta-carotene desatur 98.6 1.3E-05 2.8E-10 85.1 24.3 74 54-131 74-153 (569)
148 PRK06854 adenylylsulfate reduc 98.6 2.2E-07 4.9E-12 100.0 11.3 40 54-95 10-49 (608)
149 PRK14694 putative mercuric red 98.6 4.3E-07 9.3E-12 95.2 12.8 38 51-92 2-39 (468)
150 PLN02976 amine oxidase 98.6 8.1E-06 1.8E-10 92.2 23.0 59 392-453 1150-1209(1713)
151 TIGR01350 lipoamide_DH dihydro 98.6 3.2E-06 7E-11 88.6 18.4 59 171-250 211-272 (461)
152 PRK05976 dihydrolipoamide dehy 98.6 5.8E-07 1.3E-11 94.4 12.8 36 53-92 2-37 (472)
153 PRK05249 soluble pyridine nucl 98.6 2.4E-07 5.2E-12 97.1 9.7 38 53-94 3-40 (461)
154 PRK07573 sdhA succinate dehydr 98.6 4.3E-07 9.3E-12 98.3 11.8 37 54-94 34-70 (640)
155 PRK12834 putative FAD-binding 98.5 9.2E-07 2E-11 94.5 14.1 35 54-92 3-37 (549)
156 PRK07057 sdhA succinate dehydr 98.5 1.1E-06 2.4E-11 94.5 14.7 39 53-95 10-48 (591)
157 PRK08275 putative oxidoreducta 98.5 9.1E-07 2E-11 94.6 13.8 39 54-94 8-46 (554)
158 PRK07843 3-ketosteroid-delta-1 98.5 7.7E-07 1.7E-11 95.1 13.0 39 52-94 4-42 (557)
159 PRK12842 putative succinate de 98.5 5.7E-07 1.2E-11 96.6 12.0 41 51-95 5-45 (574)
160 PRK12839 hypothetical protein; 98.5 1.4E-06 3E-11 93.2 14.8 41 51-95 4-44 (572)
161 PRK08958 sdhA succinate dehydr 98.5 8E-07 1.7E-11 95.4 12.8 38 54-95 6-43 (588)
162 PRK09897 hypothetical protein; 98.5 2.2E-07 4.9E-12 97.4 8.1 38 56-95 2-39 (534)
163 PRK08205 sdhA succinate dehydr 98.5 1.3E-06 2.8E-11 93.9 14.1 38 53-95 3-40 (583)
164 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 9.4E-07 2E-11 89.6 12.2 124 56-199 1-124 (433)
165 PRK08010 pyridine nucleotide-d 98.5 8.3E-07 1.8E-11 92.4 12.2 35 54-92 2-36 (441)
166 PRK07395 L-aspartate oxidase; 98.5 1.2E-06 2.7E-11 93.1 13.7 40 51-95 5-44 (553)
167 PLN02815 L-aspartate oxidase 98.5 2.1E-06 4.6E-11 91.8 15.4 39 52-95 26-64 (594)
168 PRK06116 glutathione reductase 98.5 5.4E-07 1.2E-11 94.1 10.7 35 54-92 3-37 (450)
169 PRK06416 dihydrolipoamide dehy 98.5 1.1E-06 2.4E-11 92.0 13.0 35 54-92 3-37 (462)
170 PF00070 Pyr_redox: Pyridine n 98.5 1.3E-06 2.7E-11 67.7 10.0 34 57-94 1-34 (80)
171 PRK09077 L-aspartate oxidase; 98.5 7.1E-07 1.5E-11 94.9 11.5 38 53-95 6-43 (536)
172 PLN02328 lysine-specific histo 98.5 7.2E-05 1.6E-09 81.8 26.8 42 53-98 236-277 (808)
173 PRK06263 sdhA succinate dehydr 98.5 2.1E-06 4.5E-11 91.6 14.6 35 54-93 6-40 (543)
174 PRK06467 dihydrolipoamide dehy 98.5 9.8E-07 2.1E-11 92.5 11.9 37 54-94 3-39 (471)
175 PRK09078 sdhA succinate dehydr 98.5 7.3E-07 1.6E-11 95.9 11.1 38 54-95 11-48 (598)
176 PRK06370 mercuric reductase; V 98.5 5.3E-07 1.1E-11 94.5 9.5 37 52-92 2-38 (463)
177 PRK08071 L-aspartate oxidase; 98.5 2.1E-06 4.5E-11 90.8 14.0 36 55-95 3-38 (510)
178 PRK10262 thioredoxin reductase 98.5 1.6E-06 3.6E-11 86.2 12.4 37 52-92 3-39 (321)
179 PRK12837 3-ketosteroid-delta-1 98.4 1.3E-06 2.8E-11 92.5 11.9 38 53-95 5-42 (513)
180 PRK07803 sdhA succinate dehydr 98.4 6.3E-07 1.4E-11 96.9 9.7 39 53-95 6-44 (626)
181 PLN02507 glutathione reductase 98.4 1.2E-06 2.5E-11 92.5 11.4 34 53-90 23-56 (499)
182 PTZ00058 glutathione reductase 98.4 7.2E-07 1.6E-11 94.7 9.7 39 50-92 43-81 (561)
183 PRK06115 dihydrolipoamide dehy 98.4 2.1E-06 4.6E-11 89.9 13.1 37 54-94 2-38 (466)
184 TIGR01421 gluta_reduc_1 glutat 98.4 1.5E-06 3.3E-11 90.5 11.7 35 54-92 1-35 (450)
185 PRK06134 putative FAD-binding 98.4 9.4E-07 2E-11 94.9 10.2 40 52-95 9-48 (581)
186 TIGR02485 CobZ_N-term precorri 98.4 2.3E-06 5E-11 88.8 12.7 65 171-253 123-189 (432)
187 PRK07251 pyridine nucleotide-d 98.4 2.3E-06 5.1E-11 89.0 12.4 36 54-93 2-37 (438)
188 PRK13748 putative mercuric red 98.4 2.3E-06 5E-11 92.0 12.5 35 54-92 97-131 (561)
189 PRK07512 L-aspartate oxidase; 98.4 3.5E-06 7.6E-11 89.1 13.4 35 53-93 7-41 (513)
190 PF13450 NAD_binding_8: NAD(P) 98.4 3.6E-07 7.8E-12 68.1 4.2 32 60-95 1-32 (68)
191 PLN02529 lysine-specific histo 98.4 8.7E-05 1.9E-09 80.7 23.9 41 53-97 158-198 (738)
192 PRK08641 sdhA succinate dehydr 98.4 3.3E-06 7.1E-11 90.8 12.8 38 54-95 2-39 (589)
193 PRK06327 dihydrolipoamide dehy 98.4 3.7E-06 8E-11 88.4 12.9 33 54-90 3-35 (475)
194 PRK08626 fumarate reductase fl 98.4 2.4E-06 5.2E-11 92.7 11.6 39 53-95 3-41 (657)
195 PF07992 Pyr_redox_2: Pyridine 98.4 6E-07 1.3E-11 82.7 6.0 33 57-93 1-33 (201)
196 COG1231 Monoamine oxidase [Ami 98.4 3.2E-06 7E-11 84.3 11.3 43 53-99 5-47 (450)
197 PTZ00363 rab-GDP dissociation 98.3 8.2E-06 1.8E-10 84.0 14.5 43 53-99 2-44 (443)
198 PRK12845 3-ketosteroid-delta-1 98.3 1.1E-05 2.4E-10 86.1 15.8 39 52-95 13-51 (564)
199 PRK13977 myosin-cross-reactive 98.3 7.3E-06 1.6E-10 85.6 13.7 45 53-97 20-64 (576)
200 PLN03000 amine oxidase 98.3 9.5E-05 2.1E-09 81.0 22.3 42 54-99 183-224 (881)
201 PRK12835 3-ketosteroid-delta-1 98.3 3.3E-06 7.1E-11 90.6 11.0 41 52-96 8-48 (584)
202 PRK12844 3-ketosteroid-delta-1 98.3 5.1E-06 1.1E-10 88.7 12.4 39 53-95 4-42 (557)
203 TIGR01811 sdhA_Bsu succinate d 98.3 7.4E-06 1.6E-10 88.2 13.2 33 58-94 1-33 (603)
204 PLN02546 glutathione reductase 98.3 3.3E-06 7.2E-11 89.7 10.3 33 54-90 78-110 (558)
205 PRK12843 putative FAD-binding 98.3 6.8E-06 1.5E-10 88.3 12.7 40 52-95 13-52 (578)
206 COG0029 NadB Aspartate oxidase 98.3 9.3E-06 2E-10 81.7 12.2 158 57-250 9-199 (518)
207 PTZ00306 NADH-dependent fumara 98.3 1.5E-05 3.2E-10 92.2 15.7 39 53-95 407-445 (1167)
208 PRK14727 putative mercuric red 98.3 5.9E-06 1.3E-10 86.9 11.2 38 53-94 14-51 (479)
209 PRK09564 coenzyme A disulfide 98.2 5.2E-06 1.1E-10 86.6 10.2 36 57-94 2-37 (444)
210 COG2509 Uncharacterized FAD-de 98.2 0.00011 2.3E-09 73.4 18.1 58 171-248 173-231 (486)
211 KOG3923 D-aspartate oxidase [A 98.2 3.6E-05 7.8E-10 72.3 14.0 44 54-97 2-48 (342)
212 TIGR01372 soxA sarcosine oxida 98.2 1.1E-05 2.4E-10 91.7 12.6 38 54-95 162-199 (985)
213 KOG2665 Predicted FAD-dependen 98.2 7.8E-06 1.7E-10 77.1 9.2 182 52-253 45-263 (453)
214 PRK07818 dihydrolipoamide dehy 98.2 1.4E-05 3.1E-10 83.8 12.4 35 54-92 3-37 (466)
215 PRK06292 dihydrolipoamide dehy 98.2 1.4E-05 2.9E-10 83.9 12.2 34 54-91 2-35 (460)
216 KOG0685 Flavin-containing amin 98.2 0.00056 1.2E-08 68.7 22.4 40 55-97 21-60 (498)
217 PRK12831 putative oxidoreducta 98.2 3.1E-06 6.7E-11 88.4 7.0 38 53-94 138-175 (464)
218 PRK06912 acoL dihydrolipoamide 98.1 7.3E-06 1.6E-10 85.7 8.8 33 57-93 2-34 (458)
219 PF13434 K_oxygenase: L-lysine 98.1 4.8E-06 1E-10 83.1 7.1 157 55-253 2-165 (341)
220 TIGR02061 aprA adenosine phosp 98.1 1.6E-05 3.5E-10 85.2 11.1 34 57-94 1-38 (614)
221 PRK09754 phenylpropionate diox 98.1 1.1E-05 2.4E-10 82.8 9.5 38 55-94 3-40 (396)
222 PRK12779 putative bifunctional 98.1 7.1E-06 1.5E-10 92.2 8.5 37 54-94 305-341 (944)
223 PRK07845 flavoprotein disulfid 98.1 1.3E-05 2.8E-10 84.0 9.6 33 57-93 3-35 (466)
224 PRK04965 NADH:flavorubredoxin 98.1 3.3E-05 7.2E-10 78.7 11.9 107 55-256 141-250 (377)
225 PRK13800 putative oxidoreducta 98.1 3.6E-05 7.9E-10 86.9 13.0 37 53-93 11-47 (897)
226 COG4529 Uncharacterized protei 98.1 7.1E-06 1.5E-10 82.6 6.5 161 56-252 2-169 (474)
227 COG1249 Lpd Pyruvate/2-oxoglut 98.1 2E-05 4.3E-10 81.1 9.9 38 53-94 2-39 (454)
228 PRK13512 coenzyme A disulfide 98.1 1.9E-05 4.2E-10 82.0 10.0 36 57-94 3-38 (438)
229 PRK09853 putative selenate red 98.0 1.5E-05 3.2E-10 88.7 9.3 38 53-94 537-574 (1019)
230 KOG4254 Phytoene desaturase [C 98.0 0.00012 2.6E-09 72.6 14.3 63 171-253 264-327 (561)
231 KOG0029 Amine oxidase [Seconda 98.0 4.9E-06 1.1E-10 86.7 5.0 45 51-99 11-55 (501)
232 COG3349 Uncharacterized conser 98.0 9.8E-06 2.1E-10 82.4 6.6 67 56-126 1-73 (485)
233 PRK05249 soluble pyridine nucl 98.0 4.9E-05 1.1E-09 79.7 12.1 100 55-250 175-275 (461)
234 TIGR01438 TGR thioredoxin and 98.0 4.4E-05 9.6E-10 80.2 11.7 33 55-91 2-34 (484)
235 PRK14989 nitrite reductase sub 98.0 2.5E-05 5.4E-10 87.0 10.1 40 55-94 3-42 (847)
236 KOG2960 Protein involved in th 98.0 3.7E-05 8E-10 68.5 8.8 111 55-200 76-186 (328)
237 PTZ00153 lipoamide dehydrogena 98.0 0.00011 2.3E-09 79.5 14.3 34 54-91 115-148 (659)
238 PRK07208 hypothetical protein; 98.0 7.9E-06 1.7E-10 86.1 5.0 41 53-97 2-42 (479)
239 PRK04965 NADH:flavorubredoxin 97.9 3.1E-05 6.7E-10 78.9 9.1 37 56-94 3-39 (377)
240 TIGR03169 Nterm_to_SelD pyridi 97.9 3.7E-05 8E-10 78.0 9.6 37 57-94 1-37 (364)
241 KOG0042 Glycerol-3-phosphate d 97.9 6.9E-05 1.5E-09 75.8 11.0 40 52-95 64-103 (680)
242 PTZ00318 NADH dehydrogenase-li 97.9 4.4E-05 9.4E-10 79.1 9.9 37 54-94 9-45 (424)
243 TIGR01423 trypano_reduc trypan 97.9 4.3E-05 9.4E-10 80.2 9.7 35 54-91 2-36 (486)
244 COG0445 GidA Flavin-dependent 97.9 2.3E-05 5E-10 79.7 7.2 152 54-247 3-158 (621)
245 KOG2311 NAD/FAD-utilizing prot 97.9 3.3E-05 7.2E-10 76.8 8.0 158 53-246 26-185 (679)
246 PRK09754 phenylpropionate diox 97.9 9.5E-05 2.1E-09 75.9 11.9 99 55-249 144-243 (396)
247 KOG1335 Dihydrolipoamide dehyd 97.9 5.6E-05 1.2E-09 73.4 9.0 38 54-95 38-75 (506)
248 TIGR03197 MnmC_Cterm tRNA U-34 97.9 0.00079 1.7E-08 68.7 18.2 62 166-249 130-192 (381)
249 COG1053 SdhA Succinate dehydro 97.9 1.2E-05 2.6E-10 85.0 4.8 40 52-95 3-42 (562)
250 PRK06416 dihydrolipoamide dehy 97.9 9.2E-05 2E-09 77.6 11.4 99 55-249 172-274 (462)
251 PF01593 Amino_oxidase: Flavin 97.9 6E-05 1.3E-09 77.8 9.7 56 174-250 212-268 (450)
252 PRK06116 glutathione reductase 97.9 0.00014 3E-09 76.0 12.2 101 55-250 167-268 (450)
253 TIGR02374 nitri_red_nirB nitri 97.9 4E-05 8.8E-10 85.2 8.6 36 58-94 1-36 (785)
254 COG3634 AhpF Alkyl hydroperoxi 97.8 2.2E-05 4.8E-10 75.1 5.0 115 53-246 209-324 (520)
255 PRK07846 mycothione reductase; 97.8 7.5E-05 1.6E-09 77.9 9.5 33 55-93 1-33 (451)
256 PLN02852 ferredoxin-NADP+ redu 97.8 3.2E-05 7E-10 80.4 5.9 40 53-94 24-63 (491)
257 TIGR02732 zeta_caro_desat caro 97.8 3.4E-05 7.3E-10 80.9 6.2 71 57-131 1-77 (474)
258 PLN02507 glutathione reductase 97.8 0.0002 4.2E-09 75.7 11.9 99 55-249 203-302 (499)
259 COG3573 Predicted oxidoreducta 97.8 0.00074 1.6E-08 64.5 14.1 37 54-94 4-40 (552)
260 TIGR02733 desat_CrtD C-3',4' d 97.8 2.5E-05 5.5E-10 82.6 4.9 37 56-96 2-38 (492)
261 COG1252 Ndh NADH dehydrogenase 97.8 0.00014 3.1E-09 73.1 9.7 39 54-94 2-40 (405)
262 TIGR03452 mycothione_red mycot 97.7 7E-05 1.5E-09 78.1 7.8 33 55-93 2-34 (452)
263 PRK07845 flavoprotein disulfid 97.7 0.00028 6E-09 74.0 12.2 99 56-250 178-277 (466)
264 TIGR00031 UDP-GALP_mutase UDP- 97.7 3.2E-05 6.9E-10 77.8 5.0 37 56-96 2-38 (377)
265 PRK07251 pyridine nucleotide-d 97.7 0.00023 5E-09 74.1 11.6 98 55-249 157-255 (438)
266 TIGR01424 gluta_reduc_2 glutat 97.7 0.00026 5.6E-09 73.9 11.8 99 55-249 166-265 (446)
267 PRK06912 acoL dihydrolipoamide 97.7 0.00029 6.2E-09 73.8 12.3 99 55-249 170-270 (458)
268 TIGR02352 thiamin_ThiO glycine 97.7 0.00095 2.1E-08 66.7 15.5 62 166-249 132-195 (337)
269 TIGR03315 Se_ygfK putative sel 97.7 3.7E-05 8.1E-10 85.9 5.5 37 54-94 536-572 (1012)
270 PRK07818 dihydrolipoamide dehy 97.7 0.00025 5.3E-09 74.5 11.4 99 55-249 172-275 (466)
271 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.00032 7E-09 72.3 11.9 101 54-250 172-275 (454)
272 TIGR01421 gluta_reduc_1 glutat 97.7 0.0003 6.4E-09 73.4 11.6 101 55-250 166-268 (450)
273 KOG2404 Fumarate reductase, fl 97.7 9.6E-05 2.1E-09 70.1 6.8 35 57-95 11-45 (477)
274 PF00732 GMC_oxred_N: GMC oxid 97.7 4.2E-05 9.1E-10 75.1 4.5 37 56-95 1-37 (296)
275 TIGR02374 nitri_red_nirB nitri 97.7 0.00034 7.3E-09 78.0 12.0 98 56-248 141-239 (785)
276 COG2907 Predicted NAD/FAD-bind 97.7 9.1E-05 2E-09 71.1 6.4 40 54-98 7-46 (447)
277 PRK06327 dihydrolipoamide dehy 97.7 0.00032 6.9E-09 73.8 11.3 100 55-250 183-287 (475)
278 COG3075 GlpB Anaerobic glycero 97.7 4.9E-05 1.1E-09 72.4 4.5 36 54-93 1-36 (421)
279 PRK07846 mycothione reductase; 97.7 0.00041 9E-09 72.3 11.9 98 55-249 166-264 (451)
280 TIGR02053 MerA mercuric reduct 97.6 4.4E-05 9.5E-10 80.1 4.5 33 56-92 1-33 (463)
281 TIGR02053 MerA mercuric reduct 97.6 0.00037 8E-09 73.1 11.4 99 55-249 166-268 (463)
282 PRK06370 mercuric reductase; V 97.6 0.00045 9.7E-09 72.5 11.9 99 55-249 171-273 (463)
283 PRK05976 dihydrolipoamide dehy 97.6 0.00042 9E-09 72.9 11.6 101 55-249 180-283 (472)
284 COG3486 IucD Lysine/ornithine 97.6 0.0003 6.4E-09 69.3 9.5 154 52-253 2-163 (436)
285 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00056 1.2E-08 71.0 11.8 97 56-249 138-235 (427)
286 COG1148 HdrA Heterodisulfide r 97.6 6.6E-05 1.4E-09 75.0 4.5 37 55-95 124-160 (622)
287 PRK02106 choline dehydrogenase 97.6 7.2E-05 1.6E-09 80.3 5.1 39 52-93 2-40 (560)
288 PRK13512 coenzyme A disulfide 97.6 0.00051 1.1E-08 71.4 11.2 94 56-249 149-243 (438)
289 PRK06115 dihydrolipoamide dehy 97.5 0.00058 1.3E-08 71.6 11.2 35 55-93 174-208 (466)
290 PRK08010 pyridine nucleotide-d 97.5 0.0007 1.5E-08 70.6 11.8 97 56-249 159-256 (441)
291 PRK14989 nitrite reductase sub 97.5 0.00057 1.2E-08 76.3 11.5 101 56-249 146-247 (847)
292 KOG1276 Protoporphyrinogen oxi 97.5 0.00011 2.4E-09 72.5 5.1 75 54-132 10-95 (491)
293 PTZ00052 thioredoxin reductase 97.5 8.9E-05 1.9E-09 78.3 4.6 33 55-91 5-37 (499)
294 PTZ00188 adrenodoxin reductase 97.5 0.00012 2.5E-09 75.4 5.2 39 54-95 38-76 (506)
295 TIGR03452 mycothione_red mycot 97.5 0.001 2.2E-08 69.4 12.3 98 55-249 169-267 (452)
296 TIGR01423 trypano_reduc trypan 97.5 0.0011 2.4E-08 69.6 12.4 104 55-250 187-291 (486)
297 PTZ00052 thioredoxin reductase 97.5 0.00095 2.1E-08 70.5 11.9 98 56-250 183-281 (499)
298 KOG0404 Thioredoxin reductase 97.5 0.001 2.2E-08 60.0 10.2 117 54-247 7-124 (322)
299 COG0446 HcaD Uncharacterized N 97.5 0.00098 2.1E-08 68.5 11.7 99 55-248 136-238 (415)
300 PRK14694 putative mercuric red 97.5 0.0011 2.3E-08 69.7 12.1 97 55-249 178-275 (468)
301 PRK06567 putative bifunctional 97.5 0.00012 2.6E-09 80.7 5.0 36 53-92 381-416 (1028)
302 TIGR01316 gltA glutamate synth 97.5 0.00014 3.1E-09 75.8 5.2 38 53-94 131-168 (449)
303 PRK09564 coenzyme A disulfide 97.4 0.0011 2.4E-08 69.1 11.9 98 55-248 149-247 (444)
304 PRK12769 putative oxidoreducta 97.4 0.00014 3E-09 79.5 5.1 37 54-94 326-362 (654)
305 PRK12810 gltD glutamate syntha 97.4 0.00017 3.6E-09 75.7 5.4 38 53-94 141-178 (471)
306 PRK05329 anaerobic glycerol-3- 97.4 0.00014 3E-09 74.5 4.5 35 54-92 1-35 (422)
307 COG0562 Glf UDP-galactopyranos 97.4 0.00018 3.8E-09 68.6 4.6 37 55-95 1-37 (374)
308 PRK12775 putative trifunctiona 97.4 0.00017 3.6E-09 82.1 5.3 38 54-95 429-466 (1006)
309 PRK14727 putative mercuric red 97.4 0.0015 3.3E-08 68.8 12.2 97 56-250 189-286 (479)
310 TIGR03378 glycerol3P_GlpB glyc 97.4 0.00016 3.5E-09 73.3 4.5 34 56-93 1-34 (419)
311 TIGR02462 pyranose_ox pyranose 97.4 0.00018 4E-09 75.7 4.7 36 56-95 1-36 (544)
312 PRK12778 putative bifunctional 97.3 0.00021 4.6E-09 79.4 5.3 38 53-94 429-466 (752)
313 PRK11749 dihydropyrimidine deh 97.3 0.00024 5.2E-09 74.3 5.4 38 53-94 138-175 (457)
314 PTZ00318 NADH dehydrogenase-li 97.3 0.0016 3.4E-08 67.5 11.1 50 173-247 230-280 (424)
315 PRK06467 dihydrolipoamide dehy 97.3 0.0015 3.3E-08 68.5 11.1 34 56-93 175-208 (471)
316 PRK13748 putative mercuric red 97.3 0.002 4.4E-08 69.3 12.2 97 55-249 270-367 (561)
317 PTZ00058 glutathione reductase 97.3 0.0018 3.9E-08 69.0 11.5 100 55-249 237-338 (561)
318 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00066 1.4E-08 64.8 6.8 121 55-199 3-127 (439)
319 TIGR01438 TGR thioredoxin and 97.3 0.0022 4.8E-08 67.5 11.6 97 56-249 181-281 (484)
320 PLN02546 glutathione reductase 97.2 0.0027 5.8E-08 67.8 12.0 101 55-250 252-353 (558)
321 COG1252 Ndh NADH dehydrogenase 97.2 0.0011 2.5E-08 66.7 8.6 56 172-252 210-268 (405)
322 PRK12814 putative NADPH-depend 97.2 0.00038 8.2E-09 76.0 5.4 37 54-94 192-228 (652)
323 PF06100 Strep_67kDa_ant: Stre 97.2 0.013 2.9E-07 59.9 15.7 41 56-96 3-43 (500)
324 TIGR01318 gltD_gamma_fam gluta 97.2 0.00045 9.7E-09 72.3 5.5 37 54-94 140-176 (467)
325 PRK12809 putative oxidoreducta 97.1 0.00051 1.1E-08 74.9 5.4 37 54-94 309-345 (639)
326 COG2303 BetA Choline dehydroge 97.1 0.00049 1.1E-08 73.3 5.0 38 52-93 4-41 (542)
327 TIGR03377 glycerol3P_GlpA glyc 97.1 0.015 3.3E-07 61.8 16.3 69 166-255 123-199 (516)
328 PLN02785 Protein HOTHEAD 97.1 0.00059 1.3E-08 73.2 5.3 38 52-94 52-89 (587)
329 PRK06292 dihydrolipoamide dehy 97.1 0.0047 1E-07 64.7 11.8 36 55-94 169-204 (460)
330 COG0493 GltD NADPH-dependent g 97.1 0.00056 1.2E-08 70.6 4.6 37 55-95 123-159 (457)
331 PRK12770 putative glutamate sy 97.0 0.00078 1.7E-08 67.9 5.2 37 54-94 17-53 (352)
332 TIGR01317 GOGAT_sm_gam glutama 97.0 0.00098 2.1E-08 70.2 5.3 37 54-94 142-178 (485)
333 PRK12771 putative glutamate sy 97.0 0.001 2.2E-08 71.5 5.6 38 53-94 135-172 (564)
334 TIGR01810 betA choline dehydro 96.9 0.00084 1.8E-08 71.7 4.4 33 57-93 1-34 (532)
335 PTZ00153 lipoamide dehydrogena 96.8 0.0094 2E-07 64.7 11.7 35 56-94 313-347 (659)
336 KOG1800 Ferredoxin/adrenodoxin 96.8 0.0014 3E-08 63.9 4.7 37 56-94 21-57 (468)
337 TIGR03140 AhpF alkyl hydropero 96.8 0.01 2.2E-07 63.1 11.4 34 55-92 352-385 (515)
338 PRK10262 thioredoxin reductase 96.8 0.01 2.2E-07 59.0 10.8 34 55-92 146-179 (321)
339 TIGR01292 TRX_reduct thioredox 96.7 0.015 3.2E-07 57.0 11.5 34 55-92 141-174 (300)
340 PRK13984 putative oxidoreducta 96.7 0.0019 4.1E-08 70.2 5.4 38 53-94 281-318 (604)
341 TIGR03862 flavo_PP4765 unchara 96.7 0.0034 7.4E-08 63.2 6.7 39 393-431 337-375 (376)
342 TIGR03169 Nterm_to_SelD pyridi 96.6 0.01 2.2E-07 60.2 9.7 49 174-247 194-243 (364)
343 KOG1336 Monodehydroascorbate/f 96.6 0.018 3.9E-07 58.3 10.9 104 53-249 211-315 (478)
344 KOG0399 Glutamate synthase [Am 96.6 0.0022 4.8E-08 70.2 4.7 43 49-95 1779-1821(2142)
345 KOG1238 Glucose dehydrogenase/ 96.6 0.0027 5.7E-08 66.6 4.8 40 52-94 54-93 (623)
346 PF13434 K_oxygenase: L-lysine 96.6 0.0049 1.1E-07 61.6 6.5 143 52-245 187-339 (341)
347 PRK15317 alkyl hydroperoxide r 96.4 0.023 5.1E-07 60.4 10.7 35 55-93 351-385 (517)
348 PRK12770 putative glutamate sy 96.1 0.02 4.3E-07 57.8 8.1 33 56-92 173-206 (352)
349 KOG1336 Monodehydroascorbate/f 96.0 0.022 4.8E-07 57.6 7.5 42 184-249 140-182 (478)
350 COG1251 NirB NAD(P)H-nitrite r 95.9 0.017 3.6E-07 61.5 6.7 106 56-256 146-254 (793)
351 TIGR02733 desat_CrtD C-3',4' d 95.8 0.75 1.6E-05 48.6 18.8 33 392-429 458-490 (492)
352 KOG2495 NADH-dehydrogenase (ub 95.7 0.038 8.3E-07 55.1 7.9 52 173-247 275-329 (491)
353 KOG1335 Dihydrolipoamide dehyd 95.7 0.047 1E-06 53.7 8.1 36 55-94 211-246 (506)
354 KOG0405 Pyridine nucleotide-di 95.6 0.25 5.4E-06 48.1 12.7 37 52-92 17-53 (478)
355 TIGR01316 gltA glutamate synth 95.6 0.055 1.2E-06 56.5 9.3 34 55-92 272-305 (449)
356 PF01210 NAD_Gly3P_dh_N: NAD-d 95.6 0.016 3.5E-07 51.0 4.3 32 57-92 1-32 (157)
357 COG0569 TrkA K+ transport syst 95.6 0.013 2.7E-07 55.0 3.8 64 56-126 1-64 (225)
358 PRK11749 dihydropyrimidine deh 95.5 0.083 1.8E-06 55.3 10.0 34 55-92 273-307 (457)
359 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.022 4.8E-07 51.3 4.2 33 57-93 1-33 (180)
360 KOG4716 Thioredoxin reductase 95.1 0.017 3.8E-07 55.6 3.2 34 53-90 17-50 (503)
361 PF00996 GDI: GDP dissociation 94.9 0.029 6.2E-07 57.6 4.5 41 52-96 1-41 (438)
362 TIGR03467 HpnE squalene-associ 94.8 2.1 4.6E-05 43.8 18.2 58 69-130 1-65 (419)
363 KOG1346 Programmed cell death 94.8 0.14 3E-06 51.0 8.4 64 171-255 393-459 (659)
364 PRK12810 gltD glutamate syntha 94.4 0.23 5.1E-06 52.2 10.0 36 393-433 431-466 (471)
365 PF02558 ApbA: Ketopantoate re 94.2 0.062 1.3E-06 46.8 4.2 31 58-92 1-31 (151)
366 PRK06249 2-dehydropantoate 2-r 94.2 0.065 1.4E-06 53.0 4.9 34 55-92 5-38 (313)
367 PRK01438 murD UDP-N-acetylmura 94.0 0.081 1.7E-06 55.8 5.4 34 55-92 16-49 (480)
368 PRK07819 3-hydroxybutyryl-CoA 93.9 0.07 1.5E-06 52.0 4.5 34 57-94 7-40 (286)
369 PRK02705 murD UDP-N-acetylmura 93.9 0.063 1.4E-06 56.3 4.4 34 57-94 2-35 (459)
370 PRK06129 3-hydroxyacyl-CoA deh 93.9 0.058 1.3E-06 53.2 3.8 33 57-93 4-36 (308)
371 PF03721 UDPG_MGDP_dh_N: UDP-g 93.8 0.057 1.2E-06 48.9 3.4 34 56-93 1-34 (185)
372 KOG3851 Sulfide:quinone oxidor 93.6 0.071 1.5E-06 51.1 3.7 40 52-93 36-75 (446)
373 PRK07066 3-hydroxybutyryl-CoA 93.6 0.098 2.1E-06 51.6 4.8 35 56-94 8-42 (321)
374 PF13241 NAD_binding_7: Putati 93.5 0.11 2.3E-06 42.1 4.2 35 54-92 6-40 (103)
375 PRK07530 3-hydroxybutyryl-CoA 93.3 0.097 2.1E-06 51.2 4.4 34 56-93 5-38 (292)
376 TIGR01350 lipoamide_DH dihydro 93.3 0.087 1.9E-06 55.2 4.3 36 55-94 170-205 (461)
377 PRK05708 2-dehydropantoate 2-r 93.3 0.093 2E-06 51.7 4.2 34 55-92 2-35 (305)
378 PRK08293 3-hydroxybutyryl-CoA 93.1 0.099 2.1E-06 51.0 4.1 33 56-92 4-36 (287)
379 PRK06719 precorrin-2 dehydroge 93.0 0.16 3.5E-06 44.6 4.8 32 54-89 12-43 (157)
380 PF13478 XdhC_C: XdhC Rossmann 92.8 0.11 2.5E-06 44.3 3.5 32 58-93 1-32 (136)
381 PRK05675 sdhA succinate dehydr 92.8 0.65 1.4E-05 50.0 10.1 60 171-249 126-191 (570)
382 COG0446 HcaD Uncharacterized N 92.7 0.41 8.9E-06 49.0 8.2 35 58-94 1-35 (415)
383 PRK09260 3-hydroxybutyryl-CoA 92.7 0.11 2.4E-06 50.8 3.6 33 57-93 3-35 (288)
384 KOG1346 Programmed cell death 92.6 0.35 7.6E-06 48.2 6.9 138 52-249 175-313 (659)
385 PF01262 AlaDh_PNT_C: Alanine 92.6 0.16 3.5E-06 45.1 4.4 35 54-92 19-53 (168)
386 PRK06035 3-hydroxyacyl-CoA deh 92.5 0.13 2.8E-06 50.3 3.9 34 56-93 4-37 (291)
387 TIGR01470 cysG_Nterm siroheme 92.4 0.21 4.5E-06 46.0 4.9 34 55-92 9-42 (205)
388 PRK06522 2-dehydropantoate 2-r 92.3 0.15 3.3E-06 50.0 4.2 32 57-92 2-33 (304)
389 PRK12921 2-dehydropantoate 2-r 92.3 0.14 3E-06 50.4 3.9 30 57-90 2-31 (305)
390 TIGR03378 glycerol3P_GlpB glyc 92.2 0.49 1.1E-05 48.3 7.7 65 168-253 260-330 (419)
391 PRK14106 murD UDP-N-acetylmura 92.1 0.2 4.4E-06 52.3 5.1 34 55-92 5-38 (450)
392 PRK06718 precorrin-2 dehydroge 92.0 0.23 5.1E-06 45.6 4.7 34 54-91 9-42 (202)
393 COG4716 Myosin-crossreactive a 92.0 0.15 3.2E-06 50.1 3.4 43 53-95 20-62 (587)
394 COG5044 MRS6 RAB proteins gera 91.9 0.28 6E-06 48.2 5.2 41 53-97 4-44 (434)
395 PRK05808 3-hydroxybutyryl-CoA 91.8 0.16 3.4E-06 49.5 3.6 33 57-93 5-37 (282)
396 PF13738 Pyr_redox_3: Pyridine 91.8 0.27 5.8E-06 45.0 5.0 35 54-92 166-200 (203)
397 PRK06130 3-hydroxybutyryl-CoA 91.5 0.23 5.1E-06 49.0 4.6 33 56-92 5-37 (311)
398 PRK08229 2-dehydropantoate 2-r 91.5 0.21 4.6E-06 50.0 4.3 33 56-92 3-35 (341)
399 TIGR01318 gltD_gamma_fam gluta 91.5 1.6 3.5E-05 45.8 10.9 35 55-93 282-317 (467)
400 PTZ00082 L-lactate dehydrogena 91.5 0.31 6.7E-06 48.3 5.3 37 54-94 5-42 (321)
401 TIGR02354 thiF_fam2 thiamine b 91.5 0.27 5.7E-06 45.1 4.5 35 54-92 20-55 (200)
402 PLN02545 3-hydroxybutyryl-CoA 91.4 0.25 5.4E-06 48.4 4.5 34 56-93 5-38 (295)
403 PRK14618 NAD(P)H-dependent gly 91.3 0.28 6E-06 48.9 4.9 33 56-92 5-37 (328)
404 PF00056 Ldh_1_N: lactate/mala 91.3 0.33 7.1E-06 41.8 4.7 35 56-92 1-36 (141)
405 TIGR00518 alaDH alanine dehydr 91.3 0.23 5E-06 50.2 4.3 35 54-92 166-200 (370)
406 TIGR02732 zeta_caro_desat caro 91.3 13 0.00029 39.0 17.6 65 172-253 220-289 (474)
407 PRK12769 putative oxidoreducta 91.3 1.8 4E-05 47.5 11.6 34 56-93 469-503 (654)
408 PF02254 TrkA_N: TrkA-N domain 91.3 0.23 5.1E-06 40.9 3.6 32 58-93 1-32 (116)
409 cd05292 LDH_2 A subgroup of L- 91.3 0.25 5.5E-06 48.7 4.4 33 57-93 2-36 (308)
410 PRK14620 NAD(P)H-dependent gly 91.2 0.25 5.4E-06 49.2 4.3 32 57-92 2-33 (326)
411 cd00401 AdoHcyase S-adenosyl-L 91.1 0.25 5.5E-06 50.4 4.3 36 54-93 201-236 (413)
412 PRK09424 pntA NAD(P) transhydr 91.1 0.22 4.7E-06 52.3 3.9 36 54-93 164-199 (509)
413 TIGR03143 AhpF_homolog putativ 90.9 0.27 5.9E-06 52.8 4.5 35 55-93 143-177 (555)
414 COG0492 TrxB Thioredoxin reduc 90.8 1.6 3.5E-05 42.8 9.5 35 56-94 144-178 (305)
415 TIGR02964 xanthine_xdhC xanthi 90.8 0.39 8.5E-06 45.5 5.0 37 53-93 98-134 (246)
416 PRK14619 NAD(P)H-dependent gly 90.7 0.36 7.7E-06 47.7 4.8 34 55-92 4-37 (308)
417 PRK07531 bifunctional 3-hydrox 90.5 0.32 6.9E-06 51.4 4.6 34 56-93 5-38 (495)
418 KOG2755 Oxidoreductase [Genera 90.5 0.19 4.1E-06 47.0 2.5 35 58-94 2-36 (334)
419 PRK11064 wecC UDP-N-acetyl-D-m 90.3 0.31 6.7E-06 50.2 4.2 34 56-93 4-37 (415)
420 TIGR01763 MalateDH_bact malate 90.2 0.39 8.4E-06 47.2 4.7 34 56-93 2-36 (305)
421 COG1004 Ugd Predicted UDP-gluc 90.2 0.31 6.6E-06 48.6 3.8 34 56-93 1-34 (414)
422 KOG2304 3-hydroxyacyl-CoA dehy 90.1 0.27 5.8E-06 44.9 3.0 39 52-94 8-46 (298)
423 PF00899 ThiF: ThiF family; I 90.1 0.36 7.7E-06 41.2 3.7 35 55-93 2-37 (135)
424 PRK00066 ldh L-lactate dehydro 89.9 0.55 1.2E-05 46.4 5.4 36 54-93 5-42 (315)
425 PRK08268 3-hydroxy-acyl-CoA de 89.8 0.41 8.9E-06 50.6 4.7 36 55-94 7-42 (507)
426 cd01080 NAD_bind_m-THF_DH_Cycl 89.7 0.55 1.2E-05 41.7 4.7 36 53-92 42-78 (168)
427 TIGR03026 NDP-sugDHase nucleot 89.4 0.34 7.3E-06 50.0 3.7 33 57-93 2-34 (411)
428 PRK00094 gpsA NAD(P)H-dependen 89.4 0.39 8.5E-06 47.7 4.0 32 57-92 3-34 (325)
429 COG1251 NirB NAD(P)H-nitrite r 89.3 2.8 6.1E-05 45.3 10.3 44 183-249 71-115 (793)
430 PRK07417 arogenate dehydrogena 89.3 0.36 7.9E-06 46.8 3.6 32 57-92 2-33 (279)
431 PRK12475 thiamine/molybdopteri 89.2 0.49 1.1E-05 47.2 4.5 34 55-92 24-58 (338)
432 PRK04148 hypothetical protein; 89.2 0.34 7.4E-06 41.0 2.8 32 56-92 18-49 (134)
433 PRK12831 putative oxidoreducta 89.1 0.41 8.9E-06 50.2 4.1 34 55-92 281-314 (464)
434 PF01488 Shikimate_DH: Shikima 89.1 0.56 1.2E-05 40.0 4.2 35 54-92 11-46 (135)
435 PF00743 FMO-like: Flavin-bind 89.0 1.3 2.9E-05 47.0 7.9 34 55-92 183-216 (531)
436 TIGR00936 ahcY adenosylhomocys 89.0 0.51 1.1E-05 48.1 4.4 36 54-93 194-229 (406)
437 PRK06223 malate dehydrogenase; 88.9 0.54 1.2E-05 46.3 4.6 34 56-93 3-37 (307)
438 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.9 0.41 8.8E-06 50.5 3.9 35 56-94 6-40 (503)
439 COG3634 AhpF Alkyl hydroperoxi 88.8 0.36 7.8E-06 47.0 3.0 37 54-94 353-389 (520)
440 PRK07502 cyclohexadienyl dehyd 88.8 0.6 1.3E-05 46.0 4.8 33 56-92 7-41 (307)
441 KOG4405 GDP dissociation inhib 88.7 0.49 1.1E-05 47.1 3.9 41 52-96 5-45 (547)
442 PLN02353 probable UDP-glucose 88.6 0.56 1.2E-05 49.0 4.6 36 56-93 2-37 (473)
443 TIGR02356 adenyl_thiF thiazole 88.3 0.7 1.5E-05 42.5 4.5 36 54-93 20-56 (202)
444 PRK15057 UDP-glucose 6-dehydro 88.1 0.49 1.1E-05 48.2 3.7 33 57-94 2-34 (388)
445 PRK07688 thiamine/molybdopteri 88.0 0.67 1.4E-05 46.3 4.6 35 54-92 23-58 (339)
446 COG0686 Ald Alanine dehydrogen 88.0 0.47 1E-05 45.6 3.2 35 54-92 167-201 (371)
447 PF10727 Rossmann-like: Rossma 87.9 0.32 7E-06 40.9 1.9 36 53-92 8-43 (127)
448 PRK11730 fadB multifunctional 87.9 0.47 1E-05 52.5 3.7 35 56-94 314-348 (715)
449 PRK15116 sulfur acceptor prote 87.9 0.74 1.6E-05 44.1 4.6 36 54-93 29-65 (268)
450 TIGR01915 npdG NADPH-dependent 87.6 0.71 1.5E-05 43.0 4.2 32 57-92 2-34 (219)
451 COG1893 ApbA Ketopantoate redu 87.4 0.59 1.3E-05 46.0 3.7 32 57-92 2-33 (307)
452 TIGR02437 FadB fatty oxidation 87.2 0.63 1.4E-05 51.4 4.2 36 55-94 313-348 (714)
453 cd05291 HicDH_like L-2-hydroxy 87.1 0.79 1.7E-05 45.2 4.5 34 57-94 2-37 (306)
454 PRK08306 dipicolinate synthase 87.1 0.78 1.7E-05 44.9 4.4 35 54-92 151-185 (296)
455 TIGR00561 pntA NAD(P) transhyd 87.0 0.73 1.6E-05 48.3 4.3 34 55-92 164-197 (511)
456 cd01483 E1_enzyme_family Super 87.0 0.94 2E-05 38.9 4.4 33 57-93 1-34 (143)
457 PF03446 NAD_binding_2: NAD bi 87.0 0.86 1.9E-05 40.2 4.2 33 56-92 2-34 (163)
458 cd01487 E1_ThiF_like E1_ThiF_l 86.8 0.81 1.8E-05 40.9 3.9 32 57-92 1-33 (174)
459 PRK05476 S-adenosyl-L-homocyst 86.7 0.82 1.8E-05 46.9 4.4 36 54-93 211-246 (425)
460 PTZ00117 malate dehydrogenase; 86.7 0.95 2.1E-05 44.8 4.8 37 54-94 4-41 (319)
461 COG1063 Tdh Threonine dehydrog 86.7 0.74 1.6E-05 46.3 4.1 33 57-93 171-204 (350)
462 cd01339 LDH-like_MDH L-lactate 86.6 0.75 1.6E-05 45.2 4.0 32 58-93 1-33 (300)
463 PRK12549 shikimate 5-dehydroge 86.6 0.93 2E-05 44.1 4.6 34 55-92 127-161 (284)
464 TIGR02441 fa_ox_alpha_mit fatt 86.1 0.67 1.5E-05 51.4 3.7 35 56-94 336-370 (737)
465 PLN02256 arogenate dehydrogena 86.1 1.3 2.7E-05 43.6 5.2 36 53-92 34-69 (304)
466 cd05293 LDH_1 A subgroup of L- 86.1 1.2 2.7E-05 43.8 5.2 37 55-93 3-39 (312)
467 PRK08644 thiamine biosynthesis 86.0 0.98 2.1E-05 41.8 4.2 35 54-92 27-62 (212)
468 PRK11154 fadJ multifunctional 85.7 0.71 1.5E-05 51.1 3.6 35 55-93 309-344 (708)
469 TIGR02355 moeB molybdopterin s 85.5 1 2.2E-05 42.5 4.1 36 54-93 23-59 (240)
470 PF00670 AdoHcyase_NAD: S-aden 85.4 0.96 2.1E-05 39.6 3.6 35 54-92 22-56 (162)
471 COG1250 FadB 3-hydroxyacyl-CoA 85.4 0.96 2.1E-05 44.1 3.9 34 56-93 4-37 (307)
472 cd05311 NAD_bind_2_malic_enz N 85.4 1 2.2E-05 42.2 4.0 34 55-92 25-61 (226)
473 TIGR01505 tartro_sem_red 2-hyd 85.3 0.84 1.8E-05 44.6 3.6 32 57-92 1-32 (291)
474 TIGR02440 FadJ fatty oxidation 85.3 0.81 1.8E-05 50.5 3.8 34 56-93 305-339 (699)
475 KOG1439 RAB proteins geranylge 85.2 0.65 1.4E-05 46.2 2.7 40 54-97 3-42 (440)
476 PRK11199 tyrA bifunctional cho 85.2 1.1 2.4E-05 45.5 4.4 35 54-92 97-132 (374)
477 TIGR03736 PRTRC_ThiF PRTRC sys 85.2 1.2 2.6E-05 42.0 4.4 41 53-93 9-56 (244)
478 PLN02494 adenosylhomocysteinas 85.1 1.1 2.4E-05 46.2 4.4 36 54-93 253-288 (477)
479 PRK03369 murD UDP-N-acetylmura 85.0 0.97 2.1E-05 47.7 4.1 33 56-92 13-45 (488)
480 TIGR02853 spore_dpaA dipicolin 85.0 1.1 2.4E-05 43.6 4.2 34 55-92 151-184 (287)
481 PRK09496 trkA potassium transp 84.9 0.92 2E-05 47.4 3.9 33 57-93 2-34 (453)
482 cd05191 NAD_bind_amino_acid_DH 84.7 2.1 4.7E-05 33.1 5.0 34 54-90 22-55 (86)
483 PRK05690 molybdopterin biosynt 84.7 1.2 2.6E-05 42.3 4.2 35 54-92 31-66 (245)
484 PRK02472 murD UDP-N-acetylmura 84.6 1.3 2.8E-05 46.2 4.8 33 56-92 6-38 (447)
485 PRK01710 murD UDP-N-acetylmura 84.5 1.1 2.5E-05 46.8 4.3 34 56-93 15-48 (458)
486 cd01075 NAD_bind_Leu_Phe_Val_D 84.4 1.6 3.4E-05 40.1 4.7 34 55-92 28-61 (200)
487 PRK01368 murD UDP-N-acetylmura 84.3 1.5 3.3E-05 45.7 5.1 33 55-92 6-38 (454)
488 PRK10669 putative cation:proto 84.3 1.1 2.4E-05 48.2 4.2 36 54-93 416-451 (558)
489 COG1748 LYS9 Saccharopine dehy 84.2 1.3 2.9E-05 44.6 4.4 33 56-92 2-35 (389)
490 PRK15461 NADH-dependent gamma- 84.1 1.1 2.5E-05 43.8 3.9 33 57-93 3-35 (296)
491 PRK04308 murD UDP-N-acetylmura 84.0 1.6 3.6E-05 45.4 5.3 35 56-94 6-40 (445)
492 cd01078 NAD_bind_H4MPT_DH NADP 84.0 1.6 3.6E-05 39.6 4.7 34 55-92 28-62 (194)
493 cd05290 LDH_3 A subgroup of L- 83.8 1.5 3.2E-05 43.1 4.6 33 57-93 1-35 (307)
494 PRK11559 garR tartronate semia 83.6 1.3 2.9E-05 43.3 4.2 33 56-92 3-35 (296)
495 PRK08328 hypothetical protein; 83.6 1.4 3.1E-05 41.4 4.1 34 55-92 27-61 (231)
496 PRK12809 putative oxidoreducta 83.6 5.3 0.00012 43.8 9.2 35 55-93 451-486 (639)
497 PRK05562 precorrin-2 dehydroge 83.5 1.7 3.7E-05 40.4 4.5 35 54-92 24-58 (223)
498 KOG2495 NADH-dehydrogenase (ub 83.4 17 0.00036 37.0 11.4 41 50-94 50-90 (491)
499 cd00757 ThiF_MoeB_HesA_family 83.3 1.5 3.2E-05 41.1 4.2 34 55-92 21-55 (228)
500 PF03807 F420_oxidored: NADP o 83.2 1.6 3.5E-05 34.4 3.8 32 57-92 1-36 (96)
No 1
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=5.1e-52 Score=425.41 Aligned_cols=394 Identities=35% Similarity=0.582 Sum_probs=320.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
.+||+||||||+|+++|+.|++. |++|+|||+.+.+.... ......++..++++++++|+++|+++.+....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~----G~~v~viE~~~~~~~~~----g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~ 74 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS----GLRVAVLEQRVPEPLAA----DAPPALRVSAINAASEKLLTRLGVWQDILARR 74 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC----CCEEEEEeCCCCccccc----CCCCCceeeecchhHHHHHHHcCCchhhhhhc
Confidence 58999999999999999999996 99999999998653110 11223577889999999999999999988765
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
..++..+.+|+......+.+..........++.++|..|.+.|.+.+.+.++++++++++|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~-------------- 140 (400)
T PRK08013 75 ASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW-------------- 140 (400)
T ss_pred CccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--------------
Confidence 557888888876544445554433334445789999999999999999876699999999999976
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEE
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL 292 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 292 (514)
.++.+.+++.+|++++||+ |+|||.+|.||+.+++......|...++.+.++.+.++ ...++.|.+++++++
T Consensus 141 ------~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~ 214 (400)
T PRK08013 141 ------GENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAF 214 (400)
T ss_pred ------cCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEE
Confidence 3456888888999999999 99999999999999998888888888888888766554 345667888899999
Q ss_pred eecCCCc-eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225 293 LPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 371 (514)
Q Consensus 293 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (514)
+|..++. .+++|..+.+........+.+.|.+.+...+. +. ++. .
T Consensus 215 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------l~~---------------~ 260 (400)
T PRK08013 215 LPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFD----NR---------------LGL---------------C 260 (400)
T ss_pred EECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHh----Hh---------------hCc---------------e
Confidence 9998754 67888887665544445667777777765332 00 000 1
Q ss_pred eeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhh
Q 010225 372 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 451 (514)
Q Consensus 372 ~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~ 451 (514)
+.......||+..+.+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+.....+|+.|+++|+
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~ 340 (400)
T PRK08013 261 ELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRK 340 (400)
T ss_pred EecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 22233346888888899999999999999999999999999999999999999999987765555544568999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225 452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 510 (514)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 510 (514)
+++..++..++.+.++|+..+++...+|+.++.++..+|++++.+++.++|...+|..+
T Consensus 341 ~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 399 (400)
T PRK08013 341 HSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWL 399 (400)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999976566543
No 2
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=9.5e-52 Score=424.50 Aligned_cols=393 Identities=35% Similarity=0.589 Sum_probs=325.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
..+||+||||||+|+++|+.|++. |++|+|+|+.. ... . ......++..++++++++|+++|+++.+.+
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~----G~~v~viE~~~~~~~-~-----~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~ 72 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES----DLRIAVIEGQLPEEA-L-----NELPDVRVSALSRSSEHILRNLGAWQGIEA 72 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC----CCEEEEEcCCCCccc-c-----cCCCCcceecccHHHHHHHHhCCchhhhhh
Confidence 368999999999999999999996 99999999973 221 0 112346788999999999999999999987
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
....++..+.+|+........+..........++.+++..+.+.|.+.+.+.++++++++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~------------ 140 (405)
T PRK08850 73 RRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV------------ 140 (405)
T ss_pred hhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe------------
Confidence 65557888999987655556665544444456889999999999999998876699999999999976
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCce
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI 290 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 290 (514)
+++.+.|.+++|++++||+ |+|||.+|.+|+.++.......|+..++.+.++.+.++ ...+++|.+++++
T Consensus 141 --------~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~ 212 (405)
T PRK08850 141 --------GESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPL 212 (405)
T ss_pred --------eCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCce
Confidence 3456788889999999999 99999999999999988888888888999988765544 4567788899999
Q ss_pred EEeecCC-CceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225 291 ALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 369 (514)
Q Consensus 291 ~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (514)
+++|+.+ +..+++|..+..........+.+++.+.+.+.+...+ +
T Consensus 213 ~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~--------------- 258 (405)
T PRK08850 213 AFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRL-------------------G--------------- 258 (405)
T ss_pred EEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhh-------------------C---------------
Confidence 9999986 5678899988766555566677788888877543100 0
Q ss_pred eeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHH
Q 010225 370 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 449 (514)
Q Consensus 370 ~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~ 449 (514)
..+.......||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|....+.+.+.+...+|+.|+++
T Consensus 259 ~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~ 338 (405)
T PRK08850 259 LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERW 338 (405)
T ss_pred cEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 01223344468888888899999999999999999999999999999999999999999887655555557899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC-CCCCCC
Q 010225 450 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPL 510 (514)
Q Consensus 450 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 510 (514)
|++++..++..++.+.++|+.++++...+|+.++..+..+|++++.+++..+|+. .+|.++
T Consensus 339 R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~~ 400 (405)
T PRK08850 339 RKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGLKGELPELA 400 (405)
T ss_pred HhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCCchhh
Confidence 9999999999999999999999999999999999999999999999999999964 466554
No 3
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=2e-51 Score=422.52 Aligned_cols=396 Identities=36% Similarity=0.637 Sum_probs=318.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
.+||+||||||+|+++|+.|++. |++|+|||+.+.... ..........++..+++++.++|+++|+++.+.+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~~--~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~ 75 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS----GLEVLLLDGGPLSVK--PFDPQAPFEPRVSALSAASQRILERLGAWDGIAARR 75 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC----CCEEEEEcCCCcccc--ccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhh
Confidence 57999999999999999999996 999999999873210 000011224466789999999999999999988755
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
..++..+.+++..+.....+..........++.+++..+.+.|.+.+++.+ ++++++++|++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~-------------- 140 (405)
T PRK05714 76 ASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSD-IGLLANARLEQMRR-------------- 140 (405)
T ss_pred CccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCC-CEEEcCCEEEEEEE--------------
Confidence 557788888887765556665433334456789999999999999998876 99999999999986
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEE
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL 292 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 292 (514)
.++.+.|++.+|.+++||+ |+|||.+|.||+.++.+...+.|...++...+....++ ...|+.+.+.+++++
T Consensus 141 ------~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 214 (405)
T PRK05714 141 ------SGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAF 214 (405)
T ss_pred ------cCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEE
Confidence 4456888888998899999 99999999999999887777777777777666544433 456777889999999
Q ss_pred eecCCC----ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225 293 LPIGDN----FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 368 (514)
Q Consensus 293 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
+|++++ ...++|..++.........+.+.|.+.+.+.|.. + ++.
T Consensus 215 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~------------------~~~------------- 262 (405)
T PRK05714 215 LPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEG-R------------------LGE------------- 262 (405)
T ss_pred eeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH-H------------------hCC-------------
Confidence 999642 2456787776555455556778888888775541 0 000
Q ss_pred ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225 369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448 (514)
Q Consensus 369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~ 448 (514)
+.. ......||+....+++|..+||+|+|||||+++|+.|||+|+||+||..|+++|..+...+.+++...+|+.|++
T Consensus 263 -~~~-~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~ 340 (405)
T PRK05714 263 -VLS-ADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFER 340 (405)
T ss_pred -cee-cCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 111 122345888888889999999999999999999999999999999999999999887655545555789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC-CCCCCCCC
Q 010225 449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE-QRLPLPLP 511 (514)
Q Consensus 449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 511 (514)
.|++++..++..++.+.++|+..+++...+|+..|+.++..|++|+.++++.+|. +.+|.++.
T Consensus 341 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~~~ 404 (405)
T PRK05714 341 RRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPELAR 404 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCchhhc
Confidence 9999999999999999999999999999999999999999999999999999995 55777654
No 4
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=5.4e-51 Score=417.43 Aligned_cols=389 Identities=34% Similarity=0.567 Sum_probs=320.9
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
++...+||+||||||+|+++|+.|++. |++|+|||+.+.+..... ....+...++++++++|+++|+++.+
T Consensus 2 ~~~~~~dV~IvGaG~aGl~~A~~La~~----G~~v~liE~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~lGl~~~~ 72 (392)
T PRK08773 2 SRRSRRDAVIVGGGVVGAACALALADA----GLSVALVEGREPPRWQAD-----QPDLRVYAFAADNAALLDRLGVWPAV 72 (392)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcC----CCEEEEEeCCCCcccccC-----CCCCEEEEecHHHHHHHHHCCchhhh
Confidence 345678999999999999999999996 999999999876532111 22346788999999999999999999
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
.+....++..+.+|+..+.....++.........++.++|..|.+.|.+.+++.+ ++++++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~---------- 141 (392)
T PRK08773 73 RAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAG-VQLHCPARVVALEQ---------- 141 (392)
T ss_pred hHhhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeEEEEEe----------
Confidence 8755556778888876544445555444444556789999999999999999876 99999999999986
Q ss_pred CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCC
Q 010225 211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAG 288 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 288 (514)
.++.+.|++.+|.++.||+ |+|||.+|.+|+.++.......|...++.+.++.+.++ ...|+.|.+++
T Consensus 142 ----------~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g 211 (392)
T PRK08773 142 ----------DADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTG 211 (392)
T ss_pred ----------cCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCC
Confidence 3456778888888999999 99999999999999887766667777777776665444 56677888999
Q ss_pred ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 368 (514)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
+++++|.+++...++|..+..........+.+.+.+.+.+.|. .+.+.
T Consensus 212 ~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~------------------------------- 259 (392)
T PRK08773 212 PLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFA-ARLGE------------------------------- 259 (392)
T ss_pred cEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhhcC-------------------------------
Confidence 9999999999888999987665555556677888888877654 11111
Q ss_pred ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225 369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448 (514)
Q Consensus 369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~ 448 (514)
.........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.++++.+.+++...+|+.|++
T Consensus 260 --~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~ 337 (392)
T PRK08773 260 --VRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWAR 337 (392)
T ss_pred --eEecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 011233346888887889999999999999999999999999999999999999999998876667777889999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225 449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 503 (514)
Q Consensus 449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~ 503 (514)
+|+++...++...+.+.++|+.++++...+|+.+|..++++|++|+.++++.+|.
T Consensus 338 ~R~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g~ 392 (392)
T PRK08773 338 TRRSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASGV 392 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999984
No 5
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.4e-50 Score=411.19 Aligned_cols=369 Identities=28% Similarity=0.456 Sum_probs=302.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
+||+||||||+|+++|+.|++. |++|+|+|+.+.... .....++++.++++++++|+++|+|+.+.....
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~----G~~v~l~E~~~~~~~------~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~ 71 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK----GIKTTIFESKSVKSP------EFFKDIRTTALTPHSKNFLFSIDIWEELEKFVA 71 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC----CCeEEEecCCCCCCC------ccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcC
Confidence 6899999999999999999996 999999999864310 112347899999999999999999999876544
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
++..+.+++..+.....+... .....++.++|..|.+.|.+.+.+.++++++++++++++..
T Consensus 72 -~~~~~~~~~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--------------- 133 (374)
T PRK06617 72 -EMQDIYVVDNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--------------- 133 (374)
T ss_pred -CCcEEEEEECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE---------------
Confidence 788888888766555555432 23446899999999999999999987799999999999976
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEe
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL 293 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 293 (514)
.++.+.|.+.++ +++||+ |+|||.+|.+|+.++.+.....| +.++.+.++.+.++ ...+++|.+.|+++++
T Consensus 134 -----~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~l 206 (374)
T PRK06617 134 -----HNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALL 206 (374)
T ss_pred -----cCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEe
Confidence 345678888776 899999 99999999999999877666666 67788887766555 3467888899999999
Q ss_pred ecCCCc-eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225 294 PIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 372 (514)
Q Consensus 294 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (514)
|++++. ..++|..+.+........+.+.+...+...+. +.++. ..
T Consensus 207 Pl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~---------------i~ 252 (374)
T PRK06617 207 PLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNAG-------------------NSLGK---------------IT 252 (374)
T ss_pred ECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhhc-------------------hhcCc---------------ee
Confidence 999875 67889887554444445566666655544221 11110 12
Q ss_pred eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225 373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452 (514)
Q Consensus 373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~ 452 (514)
.......||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.. ..+|++|++.|++
T Consensus 253 ~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~ 322 (374)
T PRK06617 253 IDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQE 322 (374)
T ss_pred eccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhH
Confidence 233455799998889999999999999999999999999999999999999998831 2489999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225 453 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 503 (514)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~ 503 (514)
++..++..++.+.++|+..+++...+|+..|..++++|++|+.++++.+|.
T Consensus 323 ~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 323 DNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999984
No 6
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.9e-50 Score=417.88 Aligned_cols=426 Identities=45% Similarity=0.775 Sum_probs=327.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
|||+||||||+|+++|+.|++.+...|++|+|||+.+.+...+. .........++..|+++++++|+++|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 69999999999999999999821112999999999664422110 0000113468999999999999999999999876
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC--CceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g--~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
...++..+.+++........++... .....++.+++..+.+.|.+.+.+.+ +++++++++|++++.... ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~------~~ 153 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSK------YP 153 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccc------cc
Confidence 6557788888877665556665433 23455789999999999999998876 699999999999975100 00
Q ss_pred CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-CC-cceEEEecCCC
Q 010225 212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-EN-YCAWQRFLPAG 288 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~g 288 (514)
++ ++..++|++.+|++++||+ |+|||.+|.||+.+++...++.|.+.++++.+..+. ++ ...++.|.++|
T Consensus 154 ~~-------~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g 226 (437)
T TIGR01989 154 ND-------NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTG 226 (437)
T ss_pred cC-------CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCC
Confidence 11 2366888999999999999 999999999999999999999999999998887753 23 57788899999
Q ss_pred ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccc---cccccc
Q 010225 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS---AKECFE 365 (514)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 365 (514)
+++++|++++..+++|..+..........+.++|...+...+..++.+.|.... .+..+..+....... ....+.
T Consensus 227 ~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~--~~~~~~~l~~~~~~~~~~~~~~~~ 304 (437)
T TIGR01989 227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYL--LDYAMEKLNEDIGFRTEGSKSCFQ 304 (437)
T ss_pred CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccc--cccccccccccccccccccccccc
Confidence 999999999999999999877666666788899999888877333322221000 000011111000000 001111
Q ss_pred CCCceeeecc-ceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225 366 VPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 444 (514)
Q Consensus 366 ~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~ 444 (514)
.|+.+..+.. ....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+++...+|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~ 384 (437)
T TIGR01989 305 VPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK 384 (437)
T ss_pred cCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 3333333222 235699988889999999999999999999999999999999999999999999887766665578999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHH
Q 010225 445 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII 497 (514)
Q Consensus 445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 497 (514)
.|+++|++++..++..++.+.++|+..+++...+|+.+|.+++.+|++|+.++
T Consensus 385 ~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~ 437 (437)
T TIGR01989 385 PYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFIM 437 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence 99999999999999999999999999999999999999999999999999874
No 7
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1.8e-49 Score=409.69 Aligned_cols=393 Identities=32% Similarity=0.562 Sum_probs=311.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (514)
+..++||+||||||+|+++|+.|++. |++|+||||++.+.. ...++++.++++++++|+++|+++++.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~g~~~~l~~~~~~~L~~lGl~~~l~ 82 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS----GLRIALIEAQPAEAA--------AAKGQAYALSLLSARIFEGIGVWEKIL 82 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC----CCEEEEEecCCcccc--------CCCCcEEEechHHHHHHHHCChhhhhH
Confidence 34578999999999999999999996 999999999986521 124678899999999999999999987
Q ss_pred hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
.... ++..+.+++..+.....+..........++.+.+..|.+.|++.+.+.++++++++++|++++.
T Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~----------- 150 (415)
T PRK07364 83 PQIG-KFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY----------- 150 (415)
T ss_pred hhcC-CccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-----------
Confidence 7554 5667777766554444454333333445666666789999999998876799999999999976
Q ss_pred CCccccccccCCeeEEEeCC-C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecC
Q 010225 212 TPSATTLFTKGHLAKLDLSD-G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP 286 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~-g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 286 (514)
+++.+.|++.+ + .+++||+ |+|||.+|.+|+.++....++.+...++.+.+..+.++ ...+..|.+
T Consensus 151 ---------~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (415)
T PRK07364 151 ---------QQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWP 221 (415)
T ss_pred ---------cCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecC
Confidence 33556677753 2 3699999 99999999999999888777777666777777655433 334455678
Q ss_pred CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225 287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 366 (514)
Q Consensus 287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
.++++++|++++..+++|..+.+........+.+++.+.+.+.+. +|.+.
T Consensus 222 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~----------------------------- 271 (415)
T PRK07364 222 SGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYG-DQLGK----------------------------- 271 (415)
T ss_pred CCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhhcC-----------------------------
Confidence 899999999998888888876544444445677788888777554 11111
Q ss_pred CCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225 367 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y 446 (514)
+ ........||+....+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|...++.+.++....+|+.|
T Consensus 272 ---~-~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y 347 (415)
T PRK07364 272 ---L-ELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRY 347 (415)
T ss_pred ---c-eecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 0 111233457877777888999999999999999999999999999999999999999887655455556899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCC-CCCCCC
Q 010225 447 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR-LPLPLP 511 (514)
Q Consensus 447 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 511 (514)
++.|+++...++..++.+.++|+..+++..++|+.++.+++.+|++++.+++.++|+.. .|.+++
T Consensus 348 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 413 (415)
T PRK07364 348 ERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGLKGRTPQLAK 413 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCCCccCchhcc
Confidence 99999999999999999999999999999999999999999999999999999999654 666554
No 8
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.4e-49 Score=403.48 Aligned_cols=380 Identities=34% Similarity=0.512 Sum_probs=327.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC-CCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.+||+||||||+||++|+.|++. |++|+|||+. ... ...++++.|+++++++|+++|+.+.+...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~----G~~V~l~E~~~~~~----------~~~~r~~~l~~~~~~~L~~lG~~~~i~~~ 67 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA----GLDVTLLERAPREL----------LERGRGIALSPNALRALERLGLWDRLEAL 67 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEccCcccc----------ccCceeeeecHhHHHHHHHcCChhhhhhc
Confidence 57999999999999999999997 9999999998 232 34558999999999999999998888887
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
...+...+.+++... ....++........+++.+++..|.+.|.+.+.+.++++++++++|+.++.
T Consensus 68 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~------------- 133 (387)
T COG0654 68 GVPPLHVMVVDDGGR-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ------------- 133 (387)
T ss_pred cCCceeeEEEecCCc-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE-------------
Confidence 776666666665544 455555555555777899999999999999999998899999999999987
Q ss_pred ccccccccCCeeEEEeC-CCcEEEeeE-EEecCCCchhhhhhC-CCccCCCCCceEEEEEEEecCCC-cceEEEecCCCc
Q 010225 214 SATTLFTKGHLAKLDLS-DGTSLYAKL-VGADGGKSRVRELAG-FKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGP 289 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~-~g~~~~ad~-V~AdG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 289 (514)
+++.+.+++. ||++++||+ |+|||.+|.||+.++ .......|...++...+..+.++ ...+++|.+.++
T Consensus 134 -------~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (387)
T COG0654 134 -------DGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGP 206 (387)
T ss_pred -------cCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCc
Confidence 4456667777 999999999 999999999999999 45555588999999998887444 788889999999
Q ss_pred eEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225 290 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 369 (514)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (514)
+.++|++++...++|..+..........+.+.+...+.+.++.. .. ++
T Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~---------------~~--------------- 254 (387)
T COG0654 207 FALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGER--DP---------------LG--------------- 254 (387)
T ss_pred eEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcc--cc---------------cc---------------
Confidence 99999999999999999999888888999999988888865400 00 11
Q ss_pred eeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHH
Q 010225 370 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 449 (514)
Q Consensus 370 ~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~ 449 (514)
..........||+....+.+|..+||+|+|||||.++|+.|||+|+||+||..|+++|..+...+.+ ..+|+.|++.
T Consensus 255 ~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~ 331 (387)
T COG0654 255 RVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEAR 331 (387)
T ss_pred eEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHh
Confidence 1344556667999999999999999999999999999999999999999999999999999874433 7899999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 450 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 450 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
|++++..++..++.+.+.|+...++...+|+..+..+...+++++.+.+...|..
T Consensus 332 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (387)
T COG0654 332 RRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV 386 (387)
T ss_pred hhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhhccCccHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999887753
No 9
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=5.1e-49 Score=401.23 Aligned_cols=380 Identities=33% Similarity=0.602 Sum_probs=304.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
.+||+||||||+|+++|+.|++. |++|+|||+.+..... .......+...++++++++|+++|+++.+.+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~----G~~v~l~E~~~~~~~~----~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~ 74 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ----GRSVAVIEGGEPKAFE----PSQPMDIRVSAISQTSVDLLESLGAWSSIVAMR 74 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC----CCcEEEEcCCCcccCC----CCCCCCccEEEecHHHHHHHHHCCCchhhhHhh
Confidence 48999999999999999999996 9999999987632100 000113466799999999999999999998754
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
..++..+..|+... ....+..........++.+.+..|...|.+.+.+.++++++++++|++++.
T Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~-------------- 139 (384)
T PRK08849 75 VCPYKRLETWEHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF-------------- 139 (384)
T ss_pred CCccceEEEEeCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE--------------
Confidence 44677777776432 233444333333445788888899999999988877799999999999987
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEE
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL 292 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~ 292 (514)
+++.++|++++|.+++||+ |+|||.+|.+|+.++.....+.|...++.+.+..+.++ ...+++|.+.|+..+
T Consensus 140 ------~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~ 213 (384)
T PRK08849 140 ------SAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSF 213 (384)
T ss_pred ------cCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEE
Confidence 4466889999999999999 99999999999999988877888777777776655444 567888888899999
Q ss_pred eecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225 293 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 372 (514)
Q Consensus 293 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (514)
+|+.++...++|+..+.........+++.+.+.+.+.++ .+... + .
T Consensus 214 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--------------------------------~-~ 259 (384)
T PRK08849 214 LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFP-AELGE--------------------------------I-K 259 (384)
T ss_pred eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhh-hhhCc--------------------------------E-E
Confidence 999887777888876544334445677888888877554 11000 0 1
Q ss_pred eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225 373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452 (514)
Q Consensus 373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~ 452 (514)
. .....||+....+++|..+||+|+|||||.|+|+.|||+|+||+||..|+++|... +. ..+.+|+.|+++|++
T Consensus 260 ~-~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~--~~~~~L~~Ye~~R~~ 333 (384)
T PRK08849 260 V-LQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GV--LNDASFARYERRRRP 333 (384)
T ss_pred e-ccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CC--CcHHHHHHHHHHHhH
Confidence 1 23346888888899999999999999999999999999999999999999998642 22 237899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225 453 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 503 (514)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~ 503 (514)
++..++..++.+.++|+..+++...+|+.+|..++++|++|+.++++.+|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 384 (384)
T PRK08849 334 DNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALGM 384 (384)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999984
No 10
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.3e-48 Score=401.81 Aligned_cols=391 Identities=33% Similarity=0.533 Sum_probs=312.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
+||+||||||+|+++|+.|++++ .|++|+||||.+... ....+++..+++++.++|+++|+++.+.....
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g--~g~~v~liE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~ 71 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAA--PHLPVTVVDAAPAGA--------WSRDPRASAIAAAARRMLEALGVWDEIAPEAQ 71 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCC--CCCEEEEEeCCCccc--------CCCCcceEEecHHHHHHHHHCCChhhhhhhcC
Confidence 79999999999999999999961 149999999987541 12346899999999999999999999987654
Q ss_pred cCcceEEEEeCCCcc-----eeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 136 AYFDKMQVWDYTGLG-----YTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
++..+.+++..+.. ...+........+.++.++|..|.+.|.+.+.+.+ ++++++++|++++.
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~---------- 139 (403)
T PRK07333 72 -PITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALG-IDLREATSVTDFET---------- 139 (403)
T ss_pred -cccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE----------
Confidence 67777777643321 12232222223445678999999999999998876 99999999999976
Q ss_pred CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCC
Q 010225 211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAG 288 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 288 (514)
+++.+.|.+.+|.++.||+ |+|||.+|.+|+.++.......+...++.+.++.+.++ ...++++.+.+
T Consensus 140 ----------~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 209 (403)
T PRK07333 140 ----------RDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAG 209 (403)
T ss_pred ----------cCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCC
Confidence 4466788888998999999 99999999999999887776777777777777655433 45667788999
Q ss_pred ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 368 (514)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
+++++|++++..+++|..+..........+.+.+...+.+.+. .+.+.
T Consensus 210 ~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~------------------------------- 257 (403)
T PRK07333 210 PFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFG-HRLGE------------------------------- 257 (403)
T ss_pred ceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhcCc-------------------------------
Confidence 9999999999888888766544333334455666677766543 11110
Q ss_pred ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225 369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448 (514)
Q Consensus 369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~ 448 (514)
....+....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+.....+|+.|++
T Consensus 258 --~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~ 335 (403)
T PRK07333 258 --LKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQR 335 (403)
T ss_pred --eEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 011222335777777788999999999999999999999999999999999999999998764433445899999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC-CCCCCCCC
Q 010225 449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPLPL 512 (514)
Q Consensus 449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 512 (514)
+|+++...++..++.+.++|+.++++...+|+.++..+..+|++++.+++.++|+. .+|.++..
T Consensus 336 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 400 (403)
T PRK07333 336 WRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAGLTGDTPRLLKG 400 (403)
T ss_pred HHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcCCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999976 58876654
No 11
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.3e-48 Score=398.15 Aligned_cols=387 Identities=32% Similarity=0.596 Sum_probs=311.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...+||+||||||+|+++|+.|++. |++|+|||+.+..... .......+...+++++.++|+.+|+|+.+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~~----~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~ 74 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH----GFSVAVLEHAAPAPFD----ADSQPDVRISAISAASVALLKGLGVWDAVQA 74 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC----CCEEEEEcCCCCCccc----ccCCCCceEEeccHHHHHHHHHcCChhhhhh
Confidence 3568999999999999999999996 9999999998643111 0112345678999999999999999999887
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
....++..+..++... ..+.++.........+|.++|..|.+.|.+.+.+.++++++++++|++++.
T Consensus 75 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~------------ 141 (391)
T PRK08020 75 MRSHPYRRLETWEWET-AHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR------------ 141 (391)
T ss_pred hhCcccceEEEEeCCC-CeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE------------
Confidence 5544566666554333 233343333333456789999999999999998875599999999999976
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCce
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI 290 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 290 (514)
.++.+.|.+.+|.+++||+ |+|||.+|.+|+.++.....+.|...++.+.++.+.++ ...|+.|.+.++.
T Consensus 142 --------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 213 (391)
T PRK08020 142 --------DDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPR 213 (391)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCE
Confidence 3456788888888999999 99999999999999888777778778888887766543 5667888888999
Q ss_pred EEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCce
Q 010225 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 370 (514)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (514)
.++|..++..+++|...+.........+.+.+.+.+.+.+. +. ++. +
T Consensus 214 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------~~~--------------~ 260 (391)
T PRK08020 214 AFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFP----AR---------------LGA--------------V 260 (391)
T ss_pred EEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh----hh---------------ccc--------------e
Confidence 99999988888888876554444455667777777766432 10 000 1
Q ss_pred eeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225 371 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450 (514)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r 450 (514)
... ....||+....+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|.+..+.+.++....+|+.|++.|
T Consensus 261 ~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R 338 (391)
T PRK08020 261 TPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRR 338 (391)
T ss_pred Eec--cccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 111 234588887788999999999999999999999999999999999999999998876665666689999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225 451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 503 (514)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~ 503 (514)
+++...++..++.+.++|+.++++.+.+|+.+|..++..+++|+.++++.+|+
T Consensus 339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 391 (391)
T PRK08020 339 MADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL 391 (391)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999984
No 12
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.1e-48 Score=400.20 Aligned_cols=380 Identities=28% Similarity=0.499 Sum_probs=313.3
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
|+++.+||+||||||+|+++|+.|++. |++|+|||+.+.+ ...++..+++++.++|+++|+|+.+
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~----G~~v~liE~~~~~-----------~~~r~~~l~~~s~~~l~~lgl~~~~ 67 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARA----GASVALVAPEPPY-----------ADLRTTALLGPSIRFLERLGLWARL 67 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcC----CCeEEEEeCCCCC-----------CCcchhhCcHHHHHHHHHhCchhhh
Confidence 345678999999999999999999996 9999999998754 1245677889999999999999998
Q ss_pred HhhhccCcceEEEEeCCCcce----eeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCC
Q 010225 131 QQHRHAYFDKMQVWDYTGLGY----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS 206 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~ 206 (514)
..... ++..+.+++..+... ..+...+......+|.+++..+.+.|.+.+.+.+++. +++++|++++.
T Consensus 68 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~------ 139 (388)
T PRK07494 68 APHAA-PLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP------ 139 (388)
T ss_pred Hhhcc-eeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE------
Confidence 77554 677888887654321 2333333334556889999999999999999887566 88999999976
Q ss_pred cccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEe
Q 010225 207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF 284 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 284 (514)
.++.+.|++++|++++||+ |+|||.+|.+|+.++.+.....|++.++.+.+..+.++ ...++.+
T Consensus 140 --------------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 205 (388)
T PRK07494 140 --------------REDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFH 205 (388)
T ss_pred --------------cCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEe
Confidence 4466788888898999999 99999999999999988888888888888888765544 3345677
Q ss_pred cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccc
Q 010225 285 LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 364 (514)
Q Consensus 285 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (514)
.+.|+++++|++++..+++|....+........+.+.+.+.+.+.+. ++++.
T Consensus 206 ~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~~--------- 257 (388)
T PRK07494 206 TEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQ-------------------SMLGK--------- 257 (388)
T ss_pred CCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-------------------hhcCC---------
Confidence 78899999999988889999987766555566777888888776443 11111
Q ss_pred cCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225 365 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 444 (514)
Q Consensus 365 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~ 444 (514)
.........||+......+|..+||+|+|||||.++|+.|||+|+||+||..|+++|.... .+.....+|+
T Consensus 258 ------~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~ 328 (388)
T PRK07494 258 ------LTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLA 328 (388)
T ss_pred ------eEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHH
Confidence 1122334569998888889999999999999999999999999999999999999998742 2334578999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 445 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
.|+++|+++...++..++.+.++|...+++...+|+.+|..++++|++++.++++.||.+
T Consensus 329 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07494 329 AYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLGPG 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999964
No 13
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=391.05 Aligned_cols=378 Identities=30% Similarity=0.466 Sum_probs=306.3
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
|.++.+||+||||||+|+++|+.|++.+..+|++|+|+|+.+... .....++..+++.++++|+++|+|+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--------~~~~~r~~~l~~~~~~~L~~lg~~~~~ 78 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA--------SANDPRAIALSHGSRVLLETLGAWPAD 78 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc--------CCCCceEEEecHHHHHHHHhCCCchhc
Confidence 456779999999999999999999997211246899999986441 123568999999999999999999862
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
..++..+.+++........+...+......++.++|..|.+.|.+.+.+.+ +++++++++++++.
T Consensus 79 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g-~~~~~~~~v~~~~~---------- 143 (398)
T PRK06996 79 ----ATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTP-VRWLTSTTAHAPAQ---------- 143 (398)
T ss_pred ----CCcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeeeeeee----------
Confidence 225667777754433344454444444556899999999999999999987 89999999999976
Q ss_pred CCCccccccccCCeeEEEeCCC---cEEEeeE-EEecCC-CchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEe
Q 010225 211 STPSATTLFTKGHLAKLDLSDG---TSLYAKL-VGADGG-KSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF 284 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 284 (514)
.++.+++++.++ ++++||+ |+|||. +|.+|+.++.......|+..++++.++.+.++ ...++.+
T Consensus 144 ----------~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (398)
T PRK06996 144 ----------DADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERF 213 (398)
T ss_pred ----------cCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEe
Confidence 456788888755 5799999 999996 68889999888888889999999988876544 4567778
Q ss_pred cCCCceEEeecCCCc---eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccc
Q 010225 285 LPAGPIALLPIGDNF---SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK 361 (514)
Q Consensus 285 ~~~g~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
.+.|++.++|.+++. .+++|..+++........+.+.+.+.+.+.+. ++.+
T Consensus 214 ~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~------------------------- 267 (398)
T PRK06996 214 THEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFG-TRMG------------------------- 267 (398)
T ss_pred cCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhc-cccC-------------------------
Confidence 889999999998654 67888887665555566778888888888654 1100
Q ss_pred ccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225 362 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~ 441 (514)
. + ........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|... + + ...
T Consensus 268 ------~-~-~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~ 333 (398)
T PRK06996 268 ------R-F-TRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPL 333 (398)
T ss_pred ------c-e-EEecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHH
Confidence 0 1 11222335888888889999999999999999999999999999999999999999752 2 2 267
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhh
Q 010225 442 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 501 (514)
Q Consensus 442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 501 (514)
+|+.|+++|++++..++..++.+.++|+..+++...+|+.++..++.+|++|+.+++++|
T Consensus 334 ~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 334 ALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 899999999999999999999999999999999999999999999999999999999998
No 14
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-48 Score=394.44 Aligned_cols=388 Identities=27% Similarity=0.452 Sum_probs=308.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
+++||+||||||+|+++|+.|++. |++|+|+||.+.++.. .....++++.++++++++|+++|+++.+...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~-----~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~ 72 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS----GLKVTLIERQPLAALA-----DPAFDGREIALTHASREILQRLGAWDRIPED 72 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCccccc-----CCCCchhHHHhhHHHHHHHHHCCChhhhccc
Confidence 368999999999999999999996 9999999999865211 0123355678899999999999999988776
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
...+...+.+++........++.........++.++|..+.+.|.+.+.+..+++|+++++|++++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~------------- 139 (392)
T PRK09126 73 EISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT------------- 139 (392)
T ss_pred cCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE-------------
Confidence 5556677777765544444554333334456788999999999999987655599999999999976
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceE
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA 291 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 291 (514)
.++.+.|.+++|+++.||+ |+|||.+|.+|+.+++......++...+...+....+. ...+.++.++++++
T Consensus 140 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (392)
T PRK09126 140 -------DDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLA 212 (392)
T ss_pred -------cCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeE
Confidence 3456778888999999999 99999999999999877666666666665555543332 34556677778899
Q ss_pred EeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225 292 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 371 (514)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (514)
++|.+++..++++..+.+........+.+.+...+.+.|...+.. .
T Consensus 213 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------------~ 258 (392)
T PRK09126 213 LLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGA----------------------------------M 258 (392)
T ss_pred EeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccC----------------------------------e
Confidence 999999988888877665443444566777877776654311100 0
Q ss_pred eeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhh
Q 010225 372 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 451 (514)
Q Consensus 372 ~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~ 451 (514)
........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..+++.+.+...+++|+.|+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~ 338 (392)
T PRK09126 259 RLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHR 338 (392)
T ss_pred EEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 11223345787777788899999999999999999999999999999999999999998765545555889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
+++..++..++.+.++++..+++...+|+.++..+.++|++++.+++.++|..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (392)
T PRK09126 339 LATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFPPLKQAIAKQLTGRK 391 (392)
T ss_pred HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999864
No 15
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=5.8e-47 Score=387.26 Aligned_cols=383 Identities=40% Similarity=0.713 Sum_probs=308.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhcc
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (514)
||+||||||+|+++|+.|++. |++|+||||.+.++..++ ...+++..+++++.++|+++|+++++.+....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~ 71 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS----GLKIALIEATPAEAAATP-----GFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 71 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC----CCEEEEEeCCCccccCCC-----CCCcceeecCHHHHHHHHHCCchhhhhhhcCC
Confidence 799999999999999999996 999999999998743221 22457889999999999999999998873444
Q ss_pred CcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccc
Q 010225 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (514)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~ 216 (514)
+...+.+++..+.....+..........++.++|..|.+.|.+.+.+.++++|+++++|++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~---------------- 135 (385)
T TIGR01988 72 PIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR---------------- 135 (385)
T ss_pred CceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe----------------
Confidence 7778888876654444444333233445789999999999999999887799999999999976
Q ss_pred cccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEee
Q 010225 217 TLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLP 294 (514)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p 294 (514)
.++.+.+.+++|+++.+|+ |+|||.+|.+|+.++.+.....+...++...+..+.+. ...+..+.+.++++++|
T Consensus 136 ----~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p 211 (385)
T TIGR01988 136 ----HSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLP 211 (385)
T ss_pred ----cCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeE
Confidence 3456788888998999999 99999999999999877666566666666666554433 34455667889999999
Q ss_pred cCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeec
Q 010225 295 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA 374 (514)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (514)
.+++..++.|..+..........+.+++...+.+.+. .+.+. + ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------------~-~~~ 257 (385)
T TIGR01988 212 LPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFG-SRLGA--------------------------------I-TLV 257 (385)
T ss_pred CCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhcCc--------------------------------e-Eec
Confidence 9999988999876554444445667788888777543 11000 0 111
Q ss_pred cceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHH
Q 010225 375 SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 454 (514)
Q Consensus 375 ~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~ 454 (514)
.....||+....+++|..++|+|+|||||.++|+.|||+|+||+||..|++.|...++.+.++....+|+.|+++|++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~ 337 (385)
T TIGR01988 258 GERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDN 337 (385)
T ss_pred cCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 23345777777778899999999999999999999999999999999999999988765434445789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225 455 IVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502 (514)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g 502 (514)
..++..++.+.+++...++....+|+.+++.+.++|.+++.+.+.++|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
T TIGR01988 338 AAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARYAMG 385 (385)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998875
No 16
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-47 Score=390.40 Aligned_cols=382 Identities=18% Similarity=0.238 Sum_probs=300.9
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
++.+.+||+||||||+|+++|+.|++. |++|+|||+++.. ....++..+++.+.++|+++|+|+.+
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~----G~~v~liE~~~~~----------~~~~r~~~l~~~s~~~L~~lG~~~~~ 67 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARA----GVDVTVLEKHADF----------LRDFRGDTVHPSTLELMDELGLLERF 67 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcc----------CccccCceeChhHHHHHHHcCChhHH
Confidence 456779999999999999999999996 9999999998754 22346789999999999999999998
Q ss_pred HhhhccCcceEEEEeCCC-cceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225 131 QQHRHAYFDKMQVWDYTG-LGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
.+....++..+.+++... .....+..... ....++.+++..+.+.|.+.+.+.++++++++++|++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-------- 138 (407)
T PRK06185 68 LELPHQKVRTLRFEIGGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-------- 138 (407)
T ss_pred hhcccceeeeEEEEECCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe--------
Confidence 775554667777775432 12223332222 23456789999999999999987756999999999999861
Q ss_pred CCCCccccccccCCe--eEEEeCCCc-EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEe
Q 010225 210 DSTPSATTLFTKGHL--AKLDLSDGT-SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF 284 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~--~~v~~~~g~-~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 284 (514)
++.. +.+...+|+ +++||+ |+|||.+|.+|+.++++.....+....+...++..... ...++.|
T Consensus 139 -----------~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (407)
T PRK06185 139 -----------GGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRF 207 (407)
T ss_pred -----------CCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEe
Confidence 1122 344555674 799999 99999999999999988877777666555554443222 2466788
Q ss_pred cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccc
Q 010225 285 LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 364 (514)
Q Consensus 285 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (514)
.++++++++|.+ +.++++|..+..........+.+.|.+.+.+.++ .+...++.
T Consensus 208 ~~~g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----------------~~~~~l~~--------- 261 (407)
T PRK06185 208 GPGQGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAP----------------ELADRVAE--------- 261 (407)
T ss_pred cCCcEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCc----------------cHHHHHhh---------
Confidence 899999999997 7888999987766555555667777777776443 11111111
Q ss_pred cCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225 365 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 444 (514)
Q Consensus 365 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~ 444 (514)
.........||+....+++|..+|++|+|||||.++|++|||+|+||+||..|++.|.++++.+ +. ....|+
T Consensus 262 ------~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~-~~~~L~ 333 (407)
T PRK06185 262 ------LKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RV-SDRDLA 333 (407)
T ss_pred ------cCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-Cc-cHHHHH
Confidence 1123345568888888999999999999999999999999999999999999999999988765 43 358999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHhccChhHHHHHHHHh
Q 010225 445 KYEAERKPANIVMMAVLDGFQKAYSVDF--GPLNILRAAAFHGAQYISPLKRNIISYA 500 (514)
Q Consensus 445 ~Y~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 500 (514)
.|++.|+++...++..++.+.++|..+. ++...+|+.+|..+++.|++|+.++++.
T Consensus 334 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 334 AVQRRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence 9999999999999999999999999998 9999999999999999999999998874
No 17
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=6.8e-46 Score=380.61 Aligned_cols=389 Identities=28% Similarity=0.494 Sum_probs=303.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
+.+||+||||||+|+++|+.|++.. .+|++|+||||....... .....+++..+++++.++|+++|+++.+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~-~~G~~v~v~E~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 75 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS-HGGLPVALIEAFAPESDA-----HPGFDARAIALAAGTCQQLARLGVWQALADC 75 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc-cCCCEEEEEeCCCccccc-----CCCCCccceeccHHHHHHHHHCCChhhhHhh
Confidence 4689999999999999999999830 128999999996422110 1123467899999999999999999998875
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
.. +...+.+.+........+...+......++.++|..|.+.|.+.+.+.++++++++++|++++.
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~------------- 141 (395)
T PRK05732 76 AT-PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER------------- 141 (395)
T ss_pred cC-CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE-------------
Confidence 54 5556655543332223332222333345678999999999999998765699999999999976
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceE
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA 291 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 291 (514)
.++.+.|++.+|.++.+|+ |+|||.+|.+|+.++.+.....++..++...++..... ...+..+.+.++++
T Consensus 142 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 214 (395)
T PRK05732 142 -------TQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLA 214 (395)
T ss_pred -------cCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEE
Confidence 4466788888888899999 99999999999999887776667777777766654332 34455667888999
Q ss_pred EeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225 292 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 371 (514)
Q Consensus 292 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (514)
++|.+++...++|..+.+........+.+.+.+.+.+.+. |. .+. +.
T Consensus 215 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------~~~--------------~~ 261 (395)
T PRK05732 215 LLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG--WR-----------------LGR--------------IT 261 (395)
T ss_pred EeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH--hh-----------------hcc--------------ee
Confidence 9999999988889887655444455667777777776442 10 000 01
Q ss_pred eeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhh
Q 010225 372 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 451 (514)
Q Consensus 372 ~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~ 451 (514)
.......|++.....++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..+++.+.+...+.+|+.|+++|+
T Consensus 262 -~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~ 340 (395)
T PRK05732 262 -HAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQ 340 (395)
T ss_pred -ecCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 1112235777777778899999999999999999999999999999999999999988765444444689999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225 452 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 503 (514)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~ 503 (514)
++...++..++.+.++|..++++...+|+.+++.+..+|++++.+++.++|.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T PRK05732 341 QDREATIGFTDGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTLGW 392 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence 9999999999999999999989999999999999999999999999999985
No 18
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=5.7e-46 Score=379.38 Aligned_cols=378 Identities=32% Similarity=0.549 Sum_probs=299.1
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
||+||||||+|+++|+.|+++ | ++|+|+||.+.+.... ...+++..+++++.++|+++|+++.+.....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~~~~~------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 70 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL----GKIKIALIEANSPSAAQP------GFDARSLALSYGSKQILEKLGLWPKLAPFAT 70 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC----CCceEEEEeCCCccccCC------CCCCeeEeccHHHHHHHHHCCChhhhHhhcC
Confidence 799999999999999999997 9 9999999998763211 1235789999999999999999998877554
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
....+.+++........+...+......++.++|..|.+.|.+.+.+..+++++++++|++++.
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--------------- 134 (382)
T TIGR01984 71 -PILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR--------------- 134 (382)
T ss_pred -ccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE---------------
Confidence 4556666554333333443323333445788999999999999998853499999999999976
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCceEEe
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL 293 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 293 (514)
.++.++|++.+|.++.||+ |+|||.+|.+|+.++.+.....++..++...++.+.+. ...+..+.+.++++++
T Consensus 135 -----~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 209 (382)
T TIGR01984 135 -----NQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALL 209 (382)
T ss_pred -----cCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEEC
Confidence 3456788888898999999 99999999999999877666667777777776654433 3445566778899999
Q ss_pred ecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceee
Q 010225 294 PIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 372 (514)
Q Consensus 294 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (514)
|.+++ ..+++|..+.+........+.+.+.+.+.+.+. +. +. . +.
T Consensus 210 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---------------~~-------------~-~~- 255 (382)
T TIGR01984 210 PLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFG----WR---------------LG-------------K-IT- 255 (382)
T ss_pred cCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh----hh---------------cc-------------C-eE-
Confidence 99988 778888876554444445566777777766442 00 00 0 11
Q ss_pred eccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhH
Q 010225 373 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 452 (514)
Q Consensus 373 ~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~ 452 (514)
.......||+.....++|..+||+|+|||||+++|+.|||+|+||+||..|+++|..+.. +...+.+|+.|+++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~ 332 (382)
T TIGR01984 256 QVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQF 332 (382)
T ss_pred EcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHH
Confidence 112334588887778889999999999999999999999999999999999999988652 33347899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225 453 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502 (514)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g 502 (514)
++..++..++.+.++|..++++...+|+.+++.+.++|++++.+++..+|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~~~ 382 (382)
T TIGR01984 333 DQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALENFPPLKKRLARQAMG 382 (382)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998775
No 19
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=377.66 Aligned_cols=384 Identities=30% Similarity=0.490 Sum_probs=301.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
++++||+||||||+|+++|+.|++. |++|+|+||++.+...++ ....+...++++++++|+++|+++++..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~~g~~~~~~~ 73 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQS----GLRVALLAPRAPPRPADD-----AWDSRVYAISPSSQAFLERLGVWQALDA 73 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCccccCC-----CCCCceEeecHHHHHHHHHcCchhhhhh
Confidence 3568999999999999999999996 999999999987643221 2245678999999999999999998865
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
....+...+.++... ...+.+...........+.+++..+.+.|.+.+++.++++++ +++|++++.
T Consensus 74 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~------------ 139 (388)
T PRK07608 74 ARLAPVYDMRVFGDA-HARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV------------ 139 (388)
T ss_pred hcCCcceEEEEEECC-CceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe------------
Confidence 544456667666443 223333322222334467899999999999999988778888 999999976
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCce
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI 290 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 290 (514)
.++.+.|++.+|.++.||+ |+|||.+|.+|+.++.......+...++...++.+..+ ...+.++.+++++
T Consensus 140 --------~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (388)
T PRK07608 140 --------DPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGIL 211 (388)
T ss_pred --------cCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCE
Confidence 3456788888888899999 99999999999999887766666666666666655443 4466777888999
Q ss_pred EEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCce
Q 010225 291 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 370 (514)
Q Consensus 291 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (514)
+++|++++...+.|.............+++.+.+.+...+.. ..+ .+
T Consensus 212 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~--------------~~ 258 (388)
T PRK07608 212 ALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGG-------------------RLG--------------RL 258 (388)
T ss_pred EEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH-------------------hcC--------------Cc
Confidence 999999998888887765443334445667777777664320 000 01
Q ss_pred eeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225 371 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450 (514)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r 450 (514)
........||+.....+.|..+||+|+|||||.++|++|||+|+||+||..|+++|......+ +....++|+.|+++|
T Consensus 259 -~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R 336 (388)
T PRK07608 259 -ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERAR 336 (388)
T ss_pred -eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHH
Confidence 111223347777777888999999999999999999999999999999999999998864222 333468999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225 451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 502 (514)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g 502 (514)
+++...++..++.+.++|..++++...+|+.++..+..+|.+++.++++.+|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07608 337 REDILALQVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRWLVRHALG 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999876
No 20
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.9e-46 Score=355.75 Aligned_cols=434 Identities=35% Similarity=0.579 Sum_probs=365.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...|||+||||||+|+++|+.|...+....++|.|+|-...+.-+.|... +....+...+++.+..+|+.+|.|+.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~-~~f~Nrvss~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPS-ETFSNRVSSISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccC-ccccceeecCCcchHHHHHhcCHHHHhhh
Confidence 34899999999999999999999876666789999999976554555333 56778889999999999999999999999
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHH--HHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLL--SCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~--~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
.+..++..+.+|+......+.|..+... ...++.+....+...|+ ....+..+++|....++.++...+. ..
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~~~-~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~-----l~ 186 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDHDNVG-IDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEY-----LI 186 (481)
T ss_pred hccccccceeeecccchhhhhhcccccc-ccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccc-----cC
Confidence 9999999999999988888888765433 24478899999988888 4445556799999999999876211 01
Q ss_pred CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC---cceEEEecC
Q 010225 211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFLP 286 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 286 (514)
+ .+.+..+.++..||..+.+|+ |+|||.+|.+|+..+++..++.|.++++.+++.++.+. ..+|++|.|
T Consensus 187 ~-------~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP 259 (481)
T KOG3855|consen 187 K-------NDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLP 259 (481)
T ss_pred C-------CCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCC
Confidence 1 124567889999999999999 99999999999999999999999999999999887632 789999999
Q ss_pred CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCC--CCcccc----ccccccCccccc
Q 010225 287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSIS--SGSVDM----FSWFRGDATLSA 360 (514)
Q Consensus 287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~ 360 (514)
.|++.+.|+.++..+++|.+.++....+..++++.|.+.++.+|...+....-... ...... ..++....+.
T Consensus 260 ~GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~-- 337 (481)
T KOG3855|consen 260 TGPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRL-- 337 (481)
T ss_pred CCceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcc--
Confidence 99999999999999999999999999999999999999999998533322211100 001101 1121111111
Q ss_pred cccccCCCceeeeccceee-eecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcch
Q 010225 361 KECFEVPPRVVKLASERMV-FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE 439 (514)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~ 439 (514)
.....|+.+.++.++... ||+.-.++..++.+|+.|+|||||.++|++|||.|++..|+..|.+.|.++..+|.|+++
T Consensus 338 -~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS 416 (481)
T KOG3855|consen 338 -ANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS 416 (481)
T ss_pred -cccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc
Confidence 122688889998887666 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcC
Q 010225 440 ASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 503 (514)
Q Consensus 440 ~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~ 503 (514)
..-|+.|+.+|.+....++...+.+.++|..+.++...+|...|...++++++++.||...++-
T Consensus 417 ~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~~ 480 (481)
T KOG3855|consen 417 VEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASKK 480 (481)
T ss_pred hhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998864
No 21
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.5e-43 Score=375.67 Aligned_cols=377 Identities=23% Similarity=0.346 Sum_probs=289.3
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...+||+||||||+||++|+.|++. |++|+||||.+.+ ...+++..++++++++|+++|+++++.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~----G~~v~v~Er~~~~----------~~~~ra~~l~~~~~~~L~~lGl~~~l~~ 73 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY----GVRVLVLERWPTL----------YDLPRAVGIDDEALRVLQAIGLADEVLP 73 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCCceeeeCHHHHHHHHHcCChhHHHh
Confidence 4568999999999999999999996 9999999999876 4456789999999999999999999888
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCC--CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
... +...+.+++..+.....+..... ......+.+++..+++.|.+.+.+.++++|+++++|+++++
T Consensus 74 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~---------- 142 (538)
T PRK06183 74 HTT-PNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ---------- 142 (538)
T ss_pred hcc-cCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE----------
Confidence 665 55667777655543334432111 11223366889999999999998875699999999999987
Q ss_pred CCCccccccccCCeeEEEeC--CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC---cceEE
Q 010225 211 STPSATTLFTKGHLAKLDLS--DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQ 282 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~--~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 282 (514)
+++.+++++. +| .+++||+ |+|||.+|.||+.++....+..+...++...+...... ...+.
T Consensus 143 ----------~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (538)
T PRK06183 143 ----------DDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQ 212 (538)
T ss_pred ----------cCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEE
Confidence 3455777765 56 3799999 99999999999999988877777666666554332211 34556
Q ss_pred EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccc
Q 010225 283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE 362 (514)
Q Consensus 283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (514)
++.+.+++.++|.+++..++.+...+..... ...+.+.+.+.+.. |...+.
T Consensus 213 ~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~~~----------------------- 263 (538)
T PRK06183 213 YCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLASPENVWRLLAP-----WGPTPD----------------------- 263 (538)
T ss_pred EECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCCHHHHHHHHHh-----hCCCCc-----------------------
Confidence 6778899999999888777766654332111 11233333333322 211000
Q ss_pred cccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225 363 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL 442 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~ 442 (514)
..++ .....|.+..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++.. ..+.+
T Consensus 264 -------~~~~-~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~---~~~~~ 332 (538)
T PRK06183 264 -------DAEL-IRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR---AGDAL 332 (538)
T ss_pred -------ceEE-EEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHH
Confidence 0011 122346666677889999999999999999999999999999999999999999876532 24789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 443 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 443 l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
|+.|+++|++++..++..+..+.++++..++....+|+.+|..+...|.+++.++...++..
T Consensus 333 L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (538)
T PRK06183 333 LDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPM 394 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999998777654
No 22
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-43 Score=368.25 Aligned_cols=371 Identities=20% Similarity=0.272 Sum_probs=285.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
++||+||||||+||++|+.|++. |++|+||||.+.+ ...+++..++++++++|+++|+++.+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viEr~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~ 67 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA----GVKTCVIERLKET----------VPYSKALTLHPRTLEILDMRGLLERFLEKG 67 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCcceeEecHHHHHHHHhcCcHHHHHhhc
Confidence 58999999999999999999996 9999999999876 456789999999999999999999998765
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. ++....++.... ...+.... ......+.+++..+.+.|.+.+++.+ ++++++++|+++++
T Consensus 68 ~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~-------------- 128 (493)
T PRK08244 68 R-KLPSGHFAGLDT--RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQ-------------- 128 (493)
T ss_pred c-cccceEEecccc--cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE--------------
Confidence 4 444455543221 12222111 12234578999999999999998887 99999999999986
Q ss_pred cccccccCCeeEEEeC--CC-cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEecCCCc
Q 010225 215 ATTLFTKGHLAKLDLS--DG-TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGP 289 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~--~g-~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 289 (514)
.++.+++.+. +| .+++||+ |+|||.+|.||++++++..+..+...++.+.+....+. ...+.++.+.++
T Consensus 129 ------~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 202 (493)
T PRK08244 129 ------DGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGG 202 (493)
T ss_pred ------cCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCce
Confidence 3345555553 45 4799999 99999999999999988887777777777776654433 345666788899
Q ss_pred eEEeecCCCceEEEEEcCccch-HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225 290 IALLPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 368 (514)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
++++|++++..++++..+.... ......+.+++.+.+.+.+.... + .
T Consensus 203 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~-----------~-- 250 (493)
T PRK08244 203 VMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDF-------------------G-----------L-- 250 (493)
T ss_pred EEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCC-------------------C-----------c--
Confidence 9999999888887775543221 11223466777777766432000 0 0
Q ss_pred ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225 369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448 (514)
Q Consensus 369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~ 448 (514)
....+...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|..+++.. ....+|+.|++
T Consensus 251 ---~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~lL~~Ye~ 324 (493)
T PRK08244 251 ---NDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW---APDWLLDSYHA 324 (493)
T ss_pred ---CCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC---CCchhhhhhHH
Confidence 001122347777777889999999999999999999999999999999999999999988532 34789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
+|++.+..++..++....++... ++...+|+.+.. +...+.+++.+.+..+|++
T Consensus 325 eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~-~~~~~~~~~~~~~~~~~~~ 378 (493)
T PRK08244 325 ERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLSD-LLGFPEVNRYLAGQISALD 378 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHHH-HhcchHHHHHHHHHHhcCC
Confidence 99999999999999999998754 777888987554 4457889999988888776
No 23
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-43 Score=363.25 Aligned_cols=367 Identities=24% Similarity=0.279 Sum_probs=284.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
..+||+||||||+|+++|+.|++. |++|+||||.+.+. ....++..++++++++|+++|+++.+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~----G~~v~vlEr~~~~~---------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~ 68 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA----GVDVAIVERRPNQE---------LVGSRAGGLHARTLEVLDQRGIADRFLAQ 68 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC---------CCCcceeeECHHHHHHHHHcCcHHHHHhc
Confidence 358999999999999999999996 99999999988651 12346789999999999999999998875
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCC-CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
.. ......+ . ...++..... ..++++.+.+..+++.|.+.+++.+ ++|+++++|+++++
T Consensus 69 ~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~------------ 128 (488)
T PRK06834 69 GQ-VAQVTGF-A-----ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQ------------ 128 (488)
T ss_pred CC-cccccee-e-----eEecccccCCCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE------------
Confidence 43 2211111 0 1111111111 2245677899999999999999887 99999999999987
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCceE
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIA 291 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 291 (514)
+++.+.+++.+|.+++||+ |+|||.+|.+|+.+++...++.+...++.+.+..+.++. ....+.+.+...
T Consensus 129 --------~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~-~~~~~~~~g~~~ 199 (488)
T PRK06834 129 --------DDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE-WGVHRDALGIHA 199 (488)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC-cceeeCCCceEE
Confidence 4466788888888899999 999999999999999999998888888888877654321 112344567777
Q ss_pred EeecC-CCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCce
Q 010225 292 LLPIG-DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV 370 (514)
Q Consensus 292 ~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (514)
+.|.. ++..+++|..+... .....+.+++...+.+.+...+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~~~~~---------------------------------- 243 (488)
T PRK06834 200 FGRLEDEGPVRVMVTEKQVG--ATGEPTLDDLREALIAVYGTDYGI---------------------------------- 243 (488)
T ss_pred EeccCCCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHhhCCCCcc----------------------------------
Confidence 78876 56777777754332 122456778877777754311110
Q ss_pred eeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225 371 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450 (514)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r 450 (514)
....+...|++..+.+++|..|||+|+|||||.++|+.|||+|++|+||.+|+|+|...++.. +...+|+.|+++|
T Consensus 244 -~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~---~~~~lLd~Ye~eR 319 (488)
T PRK06834 244 -HSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT---SPESLLDTYHAER 319 (488)
T ss_pred -ccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHH
Confidence 011123458888888999999999999999999999999999999999999999999988632 3488999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
++.+..++..+..+..++. .++....+|+.++.++...+. ++.+...++|+.
T Consensus 320 rp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~ 371 (488)
T PRK06834 320 HPVAARVLRNTMAQVALLR-PDDRTEALRDIVAELLGMDEP-RKRIAAMMSGLD 371 (488)
T ss_pred HHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCC
Confidence 9999999999999988887 678889999999998887655 888888888875
No 24
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=8.9e-43 Score=356.60 Aligned_cols=378 Identities=16% Similarity=0.201 Sum_probs=273.7
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.||+||||||+||++|+.|++. |++|+||||.+.. ...+.+..++++++++|+++|+++.+.+...
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~----------~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~ 66 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY----GHEPTLIERAPEL----------RTGGYMVDFWGVGYEVAKRMGITDQLREAGY 66 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC----CCceEEEeCCCCc----------cCCCeEEeccCcHHHHHHHcCCHHHHHhccC
Confidence 4899999999999999999996 9999999999765 2345678889999999999999999987654
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCC--cccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNK--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
++..+.+++.++.....+....... ....+.++|..|.+.|.+.+.. + ++|+++++|++++.
T Consensus 67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~-v~i~~~~~v~~i~~------------- 130 (391)
T PRK07588 67 -QIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q-VETIFDDSIATIDE------------- 130 (391)
T ss_pred -CccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C-eEEEeCCEEeEEEE-------------
Confidence 6777888876554333333222211 1123679999999999987653 4 89999999999987
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccC-CCC-CceEEEEEEEecCC-CcceEEEec-CCC
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTG-WSY-SQNAIICTVEHNKE-NYCAWQRFL-PAG 288 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~g 288 (514)
+++.+.|.+++|+++++|+ |+|||.+|.||+.+...... ..+ +.......++...+ ....+..+. +++
T Consensus 131 -------~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 203 (391)
T PRK07588 131 -------HRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGR 203 (391)
T ss_pred -------CCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCC
Confidence 4467889999999999999 99999999999986322221 112 22222222221111 233344443 566
Q ss_pred ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCC
Q 010225 289 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP 368 (514)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
++.++|+.++...++|....... ....+.+...+.+.+.+. .|.... ...++..
T Consensus 204 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~-------~~~~~~~---------------- 257 (391)
T PRK07588 204 QVARVALRGDRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFG-DVGWET-------PDILAAL---------------- 257 (391)
T ss_pred EEEEEecCCCCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhc-cCCccH-------HHHHHhh----------------
Confidence 89999998887666665543321 122455667777777654 222210 0011110
Q ss_pred ceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225 369 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448 (514)
Q Consensus 369 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~ 448 (514)
... .....+++....+++|..+||+|+|||||.|+|+.|||+|+||+||..|++.|.... .+ .+.+|+.|++
T Consensus 258 --~~~-~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~ 329 (391)
T PRK07588 258 --DDV-EDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEK 329 (391)
T ss_pred --hcc-cchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHH
Confidence 000 001112233334677899999999999999999999999999999999999998632 13 3789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCC
Q 010225 449 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR 505 (514)
Q Consensus 449 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~ 505 (514)
.|++++..++..++.+.++|+..+++...+|+.++..++ .|++++.+++.....+.
T Consensus 330 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (391)
T PRK07588 330 RLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN-LPPVADFVGAGSFRDDF 385 (391)
T ss_pred HHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc-cchhhhhhhhccccCCC
Confidence 999999999999999999999999999999999999999 89999999887765553
No 25
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=8.3e-42 Score=349.11 Aligned_cols=369 Identities=20% Similarity=0.305 Sum_probs=259.6
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
+.++||+||||||+|+++|+.|++. |++|+|||+.+.+ ...+++..+++++.++|+++|+++.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~----G~~v~v~E~~~~~----------~~~~~~~~l~~~~~~~L~~lGl~~~~~~ 68 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGAR----GHSVTVVERAARN----------RAQNGADLLKPSGIGVVRAMGLLDDVFA 68 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhc----CCcEEEEeCCCcc----------cCCCcccccCccHHHHHHHcCCHHHHHh
Confidence 4568999999999999999999996 9999999999976 2233456799999999999999999887
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
........+.++.. +.....++........+.+.++|..|.+.|.+.+...++++++++++|++++..
T Consensus 69 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~----------- 136 (388)
T PRK07045 69 AGGLRRDAMRLYHD-KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERD----------- 136 (388)
T ss_pred cccccccceEEecC-CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-----------
Confidence 55433445555432 222222222111111223568999999999999977666999999999999871
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh-CCCccCCCCCceEEEEEEEecCCC-cceEEEecC-CC
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP-AG 288 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g 288 (514)
+ ++..+.|++.+|+++.+|+ |+|||.+|.+|+++ +.......|....+.+.+...... .....++.+ .+
T Consensus 137 ~-------~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (388)
T PRK07045 137 A-------DGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQG 209 (388)
T ss_pred C-------CCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCc
Confidence 1 1224578888999999999 99999999999975 544444444444444555433222 222223333 46
Q ss_pred ceEEeecCCCceEEEEEcCccchHH-hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225 289 PIALLPIGDNFSNIVWTMNPKDASD-CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 367 (514)
Q Consensus 289 ~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
+.+++|++++..+++|..+.+.... ....+.+.+.+.+...+. +.. .+.++.
T Consensus 210 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~---------------- 262 (388)
T PRK07045 210 LAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVG----DES-------ADAMAA---------------- 262 (388)
T ss_pred eEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcC----ccc-------hHHHhc----------------
Confidence 6789999888878888776543322 122334455554443211 110 000000
Q ss_pred CceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHH
Q 010225 368 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 447 (514)
Q Consensus 368 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~ 447 (514)
.........+|+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|..++.... ....+|+.|+
T Consensus 263 ---~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~--~~~~~L~~Ye 337 (388)
T PRK07045 263 ---IGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQI--ALADALERFE 337 (388)
T ss_pred ---cCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHH
Confidence 00011112346666667889999999999999999999999999999999999999998764322 2478999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225 448 AERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA 486 (514)
Q Consensus 448 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 486 (514)
++|+++...++..++.+.+.|+...+.....|.++...-
T Consensus 338 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK07045 338 RIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQTSG 376 (388)
T ss_pred HHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhccc
Confidence 999999999999999999999998888888777766543
No 26
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-40 Score=354.44 Aligned_cols=369 Identities=20% Similarity=0.273 Sum_probs=273.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
+..+||+||||||+||++|+.|++. |++|+||||.+.. ...+++..++++++++|+++|+++.+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viE~~~~~----------~~~~ra~~l~~~~~~~l~~lGl~~~l~~ 86 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ----GVPVVLLDDDDTL----------STGSRAICFAKRSLEIFDRLGCGERMVD 86 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC----------CCCCeEEEEcHHHHHHHHHcCCcHHHHh
Confidence 4678999999999999999999996 9999999999865 3456789999999999999999999887
Q ss_pred hhccCcceEEEEeCCCcceeeeccCC-C-CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARD-V-NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
... ......++...+ ....+.... . ...+..+.+++..+++.|.+.+.+.++++|+++++|++++.
T Consensus 87 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~---------- 154 (547)
T PRK08132 87 KGV-SWNVGKVFLRDE-EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ---------- 154 (547)
T ss_pred hCc-eeeceeEEeCCC-eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE----------
Confidence 654 232223333221 122222111 1 11222456889999999999998876699999999999987
Q ss_pred CCCccccccccCCeeEEEe--CCCc-EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-cceEEEec
Q 010225 211 STPSATTLFTKGHLAKLDL--SDGT-SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFL 285 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~--~~g~-~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 285 (514)
.++.+.+.+ .+|. +++||+ |+|||.+|.||+.+++...+..+...++...+..+.+. ...+.++.
T Consensus 155 ----------~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~ 224 (547)
T PRK08132 155 ----------HDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFD 224 (547)
T ss_pred ----------cCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEe
Confidence 334455444 3554 699999 99999999999999998888777666666665554332 22233332
Q ss_pred ----CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccc
Q 010225 286 ----PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK 361 (514)
Q Consensus 286 ----~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
++..+++.|.+++.+++.+........ ....+.+.+.+.+.+.+. ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~------------------------ 275 (547)
T PRK08132 225 PPFHPGQSVLLHRQPDNVWRIDFQLGWDADP-EAEKKPENVIPRVRALLG----ED------------------------ 275 (547)
T ss_pred ccCCCCcEEEEEeCCCCeEEEEEecCCCCCc-hhhcCHHHHHHHHHHHcC----CC------------------------
Confidence 334556666666766665544322111 112345666666666432 00
Q ss_pred ccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225 362 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~ 441 (514)
.+ .+ ..+...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++.. ..+.
T Consensus 276 ----~~---~~-~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~---~~~~ 344 (547)
T PRK08132 276 ----VP---FE-LEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR---APDS 344 (547)
T ss_pred ----CC---ee-EEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC---CcHH
Confidence 00 00 1122347777778899999999999999999999999999999999999999999987643 3488
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHH
Q 010225 442 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII 497 (514)
Q Consensus 442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~ 497 (514)
+|+.|+++|+++++.++..+..+..+++..++....+|+.++..+...+.+++.+-
T Consensus 345 lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 400 (547)
T PRK08132 345 LLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARRLVN 400 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcccHHHHHHHh
Confidence 99999999999999999999999999998888888999999999988888876663
No 27
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=1.5e-40 Score=355.49 Aligned_cols=353 Identities=20% Similarity=0.291 Sum_probs=260.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (514)
++.++||+||||||+||++|+.|++. .|++|+|||+.+.+ ...+++.+|+++++++|+++|+++.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~---~Gi~v~IiE~~~~~----------~~~grA~gl~prtleiL~~lGl~d~l~ 95 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAF---PDITTRIVERKPGR----------LELGQADGIACRTMEMFQAFGFAERIL 95 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcC---CCCcEEEEEcCCCC----------CCCCeeeEEChHHHHHHHhccchHHHH
Confidence 45689999999999999999999993 29999999999865 456778999999999999999999998
Q ss_pred hhhccCcceEEEEeCCCcc--eee----ec-cCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCC
Q 010225 132 QHRHAYFDKMQVWDYTGLG--YTK----YN-ARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPS 203 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~ 203 (514)
+.+. ....+.+|+..+.. .+. +. ........+...+++..+++.|++.+.+.+ .+++.++++|++++.+
T Consensus 96 ~~g~-~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~-- 172 (634)
T PRK08294 96 KEAY-WINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVD-- 172 (634)
T ss_pred hhcc-cccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEEC--
Confidence 8666 66677788644321 110 00 000011122367899999999999998776 3688999999999871
Q ss_pred CCCcccCCCCccccccccCCeeEEEeC------CC--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec
Q 010225 204 SSSISVDSTPSATTLFTKGHLAKLDLS------DG--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN 274 (514)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~ 274 (514)
.+ .+..++|++. +| ++++||+ |+|||++|.||+++++...+..+...+....+...
T Consensus 173 -------~~--------~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~ 237 (634)
T PRK08294 173 -------EE--------GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV 237 (634)
T ss_pred -------CC--------CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc
Confidence 10 2245677664 35 4799999 99999999999999998888877776665555432
Q ss_pred C--CC-cceEE-EecCCCceEEeecCCC-ceEEEEEcCc---cchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 010225 275 K--EN-YCAWQ-RFLPAGPIALLPIGDN-FSNIVWTMNP---KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV 346 (514)
Q Consensus 275 ~--~~-~~~~~-~~~~~g~~~~~p~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (514)
. +. ..... ...+.|.++++|.+++ ..++++.... .........+.+.+.+.+...+. .|...
T Consensus 238 ~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~-p~~~~--------- 307 (634)
T PRK08294 238 TDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILH-PYTLD--------- 307 (634)
T ss_pred cCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcC-CCCCc---------
Confidence 2 22 11111 2246789999999887 4666554322 11122345677888888877443 11000
Q ss_pred ccccccccCccccccccccCCCceeeeccceeeeeccccccccc----------ccCcEEEEcccccccCCcccccchhh
Q 010225 347 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY----------VSKRVVLIGDAAHTVHPLAGQGVNLG 416 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----------~~~~v~LvGDAAh~~~P~~GqG~~~a 416 (514)
.....+...|++..+.+++| ..+||+|+|||||.++|..|||+|++
T Consensus 308 ------------------------~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~g 363 (634)
T PRK08294 308 ------------------------VKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVS 363 (634)
T ss_pred ------------------------eeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhH
Confidence 11223444577777776666 35899999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010225 417 FGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 472 (514)
Q Consensus 417 l~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 472 (514)
|+||.+|+|+|..+++.. +..++|+.|+++|+++++.++..++.+.++|+...
T Consensus 364 iqDA~nLawkLa~vl~g~---a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 364 MQDGFNLGWKLAAVLSGR---SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred HHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999999999999988632 35889999999999999999999999999997754
No 28
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=2.5e-40 Score=338.21 Aligned_cols=377 Identities=15% Similarity=0.105 Sum_probs=263.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
++||+||||||+||++|+.|++. |++|+|+||.+.... ....++..+.++++++|+++|+++.+.+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~ 69 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA----GIDSVVLERRSREYV--------EGRIRAGVLEQGTVDLLREAGVGERMDREG 69 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc----CCCEEEEEcCCcccc--------ccccceeEECHhHHHHHHHcCChHHHHhcC
Confidence 57999999999999999999996 999999999985310 123345679999999999999999998765
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. ....+.+++........+. ..........+++..+.+.|++.+.+.+ ++++++++|++++.
T Consensus 70 ~-~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~l~~~Ll~~a~~~g-v~v~~~~~v~~i~~-------------- 131 (392)
T PRK08243 70 L-VHDGIELRFDGRRHRIDLT--ELTGGRAVTVYGQTEVTRDLMAARLAAG-GPIRFEASDVALHD-------------- 131 (392)
T ss_pred C-ccCcEEEEECCEEEEeccc--cccCCceEEEeCcHHHHHHHHHHHHhCC-CeEEEeeeEEEEEe--------------
Confidence 5 5667777654332222222 1122233456678899999998888776 89999999999864
Q ss_pred cccccccCCeeEEEe-CCCc--EEEeeE-EEecCCCchhhhhhCCCccCC---CCCceEEEEEE-EecCCCcceEEEecC
Q 010225 215 ATTLFTKGHLAKLDL-SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGW---SYSQNAIICTV-EHNKENYCAWQRFLP 286 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~ 286 (514)
.+++.+.|++ .+|+ +++||+ |+|||.+|.+|++++...... .+.. .+.+.+ ..............+
T Consensus 132 -----~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 205 (392)
T PRK08243 132 -----FDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPF-GWLGILAEAPPVSDELIYANHE 205 (392)
T ss_pred -----cCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCc-eEEEEeCCCCCCCCceEEeeCC
Confidence 0123455665 4664 699999 999999999999996543211 1111 122221 111111122211223
Q ss_pred CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225 287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 366 (514)
Q Consensus 287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
.++.++.+.+++...+++..+... .....+.+.+.+.+.+.+.. +... . +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-~~~~--------------~-------------~ 255 (392)
T PRK08243 206 RGFALCSMRSPTRSRYYLQCPLDD--KVEDWSDERFWDELRRRLPP-EDAE--------------R-------------L 255 (392)
T ss_pred CceEEEecCCCCcEEEEEEecCCC--CcccCChhHHHHHHHHhcCc-cccc--------------c-------------c
Confidence 344444444555556666554332 12234556666777665541 1000 0 0
Q ss_pred CCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225 367 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 446 (514)
Q Consensus 367 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y 446 (514)
+.........+|+....+.+|..|||+|+|||||.++|+.|||+|+||+||..|+++|...++.+ .+++|+.|
T Consensus 256 ---~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Y 328 (392)
T PRK08243 256 ---VTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAY 328 (392)
T ss_pred ---ccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHH
Confidence 00000111235666667788989999999999999999999999999999999999999987542 27899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCC
Q 010225 447 EAERKPANIVMMAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 504 (514)
Q Consensus 447 ~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~ 504 (514)
+++|++++..++..++.+.++++. ...+...+|+..|..+...|..+..+....+|+.
T Consensus 329 e~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK08243 329 SATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAATTLAENYVGLP 389 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence 999999999999999999999887 4557788999999999999999999999999873
No 29
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=352.03 Aligned_cols=339 Identities=24% Similarity=0.334 Sum_probs=253.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
..+||+||||||+||++|+.|+++ |++|+||||.+.+ ...+++..++++++++|+++|+++++.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~----Gi~v~viE~~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~ 67 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR----GVSFRLIEKAPEP----------FPGSRGKGIQPRTQEVFDDLGVLDRVVAA 67 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CcCccceeecHHHHHHHHHcCcHHHHHhc
Confidence 358999999999999999999997 9999999999876 44567899999999999999999999886
Q ss_pred hccCcceEEEEeCCCcc-eeeeccCC----CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225 134 RHAYFDKMQVWDYTGLG-YTKYNARD----VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~ 208 (514)
.. ....+.+|...+.. ...+.... .......+.+++..+++.|.+.+.+.+ ++|+++++|+++++
T Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~-------- 137 (502)
T PRK06184 68 GG-LYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQ-------- 137 (502)
T ss_pred Cc-cccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEE--------
Confidence 65 45555566543321 11111100 011233578899999999999999886 99999999999987
Q ss_pred cCCCCccccccccCCeeEEEe---CCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCc-eEEEEEEEecCCCcceEEE
Q 010225 209 VDSTPSATTLFTKGHLAKLDL---SDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKENYCAWQR 283 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~---~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 283 (514)
+++.+++.+ .++++++||+ |+|||.+|.||+++++...+..+.. .++.+.+.........+..
T Consensus 138 ------------~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (502)
T PRK06184 138 ------------DADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQ 205 (502)
T ss_pred ------------cCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEE
Confidence 334566666 5666899999 9999999999999999888877765 6666655544333333433
Q ss_pred ec-CC-CceEEeecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccc
Q 010225 284 FL-PA-GPIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 360 (514)
Q Consensus 284 ~~-~~-g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (514)
+. +. +.+.++|++++ .+.+.+..+... ....+.+.+.+.+...+. +.+
T Consensus 206 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~------------------------ 256 (502)
T PRK06184 206 WPDGDMGMIALCPLPGTDLFQIQAPLPPGG---EPDLSADGLTALLAERTG--RTD------------------------ 256 (502)
T ss_pred ccCCCCcEEEEEEccCCCeEEEEEEcCCCc---cCCCCHHHHHHHHHHhcC--CCC------------------------
Confidence 33 33 67888898764 555555544321 223466777777665332 000
Q ss_pred cccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchH
Q 010225 361 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA 440 (514)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~ 440 (514)
+ ......+...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|..+++. ..+
T Consensus 257 -----~---~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g----~~~ 324 (502)
T PRK06184 257 -----I---RLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG----APE 324 (502)
T ss_pred -----c---ceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC----CCH
Confidence 0 0111223345777777788899999999999999999999999999999999999999988764 237
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225 441 SLLKKYEAERKPANIVMMAVLDGFQKAYS 469 (514)
Q Consensus 441 ~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~ 469 (514)
.+|+.|+++|++++..++..+..+...+.
T Consensus 325 ~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 325 ALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999988887764
No 30
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=4e-41 Score=342.46 Aligned_cols=352 Identities=18% Similarity=0.245 Sum_probs=258.7
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.||+||||||+||++|+.|++. |++|+||||++.+. ..++++.+++++++.|+.+|+++.+.....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~----g~~v~v~E~~~~~~----------~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~ 66 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ----GHEVKVFEKNESVK----------EVGAGIGIGDNVIKKLGNHDLAKGIKNAGQ 66 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccc----------ccccceeeChHHHHHHHhcChHHHHHhcCC
Confidence 3799999999999999999996 99999999999773 345689999999999999999988876554
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
+...+.+++.++.....+.. .....++.++|..|.+.|.+.+.. .+|+++++|++++.
T Consensus 67 -~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~---~~i~~~~~v~~i~~--------------- 124 (373)
T PRK06753 67 -ILSTMNLLDDKGTLLNKVKL---KSNTLNVTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIEN--------------- 124 (373)
T ss_pred -cccceeEEcCCCCEEeeccc---ccCCccccccHHHHHHHHHHhCCC---ceEEECCEEEEEEe---------------
Confidence 67778888765432222211 223456789999999999998763 67999999999976
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-C-CcceEEEecCCCceEE
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E-NYCAWQRFLPAGPIAL 292 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~ 292 (514)
+++.++|++++|+++.+|+ |+|||.+|.+|+.++........+...+.+.++... + .......+.+.+++++
T Consensus 125 -----~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 199 (373)
T PRK06753 125 -----ETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGI 199 (373)
T ss_pred -----cCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEE
Confidence 4466888999999999999 999999999999997655444445555555544322 1 2344455677889999
Q ss_pred eecCCCceEEEEEcCccch-HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCcee
Q 010225 293 LPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 371 (514)
Q Consensus 293 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (514)
+|..++...+++....... ......+.+ .+.+.+. +|.+.. .+.++. . +.
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~-~~~~~~-------~~~~~~----~----------~~--- 250 (373)
T PRK06753 200 VPLLNNQAYWFITINAKERDPKYSSFGKP----HLQAYFN-HYPNEV-------REILDK----Q----------SE--- 250 (373)
T ss_pred EEcCCCeEEEEEEeccccCCcccccccHH----HHHHHHh-cCChHH-------HHHHHh----C----------Cc---
Confidence 9999887666655543221 111122222 3333333 332220 111111 0 00
Q ss_pred eeccceeeeeccc-ccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHh
Q 010225 372 KLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 450 (514)
Q Consensus 372 ~~~~~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r 450 (514)
.....++++. .+.++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|... +. +.+|+.|++.|
T Consensus 251 ---~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-----~~--~~al~~Y~~~r 320 (373)
T PRK06753 251 ---TGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-----DF--EKALQRYDKIR 320 (373)
T ss_pred ---ccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-----cH--HHHHHHHHHHh
Confidence 0001122221 2356788999999999999999999999999999999999999642 33 78999999999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhc
Q 010225 451 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ 487 (514)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 487 (514)
++++..++..++.+.++++..+++...+|+.+|..+.
T Consensus 321 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 357 (373)
T PRK06753 321 VKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMP 357 (373)
T ss_pred hHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999998774
No 31
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=1e-40 Score=348.35 Aligned_cols=396 Identities=17% Similarity=0.170 Sum_probs=272.8
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
.....+||+||||||+|+++|+.|++. |++|+|+||+... .....+..+++++.++|+++|+++.+
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~----G~~V~vlEr~~~~----------~~~~~g~~L~p~g~~~L~~LGl~d~l 104 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKD----GRRVHVIERDLRE----------PERMMGEFMQPGGRFMLSKLGLEDCL 104 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHc----CCeEEEEECcCCC----------CccccccccCchHHHHHHHcCCcchh
Confidence 345678999999999999999999996 9999999998643 22345788999999999999999988
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCC--CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARD--VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~ 208 (514)
......+...+.+++........++... ......++.++|.+|.+.|++.+.+.++++++++ +++++..
T Consensus 105 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-------- 175 (514)
T PLN02985 105 EGIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-------- 175 (514)
T ss_pred hhccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE--------
Confidence 7755556777777764332233443221 1223456889999999999999988877998877 5777754
Q ss_pred cCCCCccccccccCC--eeEEEeCCCc--EEEeeE-EEecCCCchhhhhhCCCccC-CCCCceEEEEEEEecCCCcceEE
Q 010225 209 VDSTPSATTLFTKGH--LAKLDLSDGT--SLYAKL-VGADGGKSRVRELAGFKTTG-WSYSQNAIICTVEHNKENYCAWQ 282 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~--~~~v~~~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
+++. ++++...+|+ ++.||+ |+|||.+|.+|+.++..... ..+...++........+ ...+.
T Consensus 176 -----------~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~ 243 (514)
T PLN02985 176 -----------EKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEP-EKLHL 243 (514)
T ss_pred -----------cCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCC-CcceE
Confidence 0122 2444445665 467999 99999999999999754432 22222222111211111 33345
Q ss_pred EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccc-cccCcccccc
Q 010225 283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW-FRGDATLSAK 361 (514)
Q Consensus 283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 361 (514)
++.+++++.++|++++..++.+..+.+... .....++...+.+.+. +. ..+.+.. +...
T Consensus 244 ~~~~~~~~l~ypi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----p~-------~p~~l~~~f~~~------ 303 (514)
T PLN02985 244 IMSKPSFTMLYQISSTDVRCVFEVLPDNIP---SIANGEMSTFVKNTIA----PQ-------VPPKLRKIFLKG------ 303 (514)
T ss_pred EcCCCceEEEEEeCCCeEEEEEEEeCCCCC---CcChhhHHHHHHhccc----cc-------cCHHHHHHHHhh------
Confidence 567788999999998888888877654321 1122333333332111 00 0000111 0000
Q ss_pred ccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225 362 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~ 441 (514)
+. .. .....+|....+...+..++++|+|||||+++|++|||+|+|++||..|++.|.....-........
T Consensus 304 ----~~----~~-~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~ 374 (514)
T PLN02985 304 ----ID----EG-AHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSE 374 (514)
T ss_pred ----cc----cc-cceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHH
Confidence 00 00 0111233333333445568999999999999999999999999999999999987421111112368
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225 442 LLKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 510 (514)
Q Consensus 442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 510 (514)
+|+.|++.|++++..++..+..++++|.. ++...+.+|+..|..+..-....+-.+..++|+.+.|+.|
T Consensus 375 aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l 444 (514)
T PLN02985 375 VIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSL 444 (514)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHH
Confidence 99999999999999999999999999974 5666899999999998888888889999999999998754
No 32
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.3e-40 Score=341.18 Aligned_cols=352 Identities=17% Similarity=0.177 Sum_probs=246.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+||||||+||++|+.|++. |++|+|+||.+.+ ...++++.++++++++|+++|+++++.....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~----G~~V~i~E~~~~~----------~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~ 68 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR----GWAVTIIEKAQEL----------SEVGAGLQLAPNAMRHLERLGVADRLSGTGV 68 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcc----------CcCCccceeChhHHHHHHHCCChHHHhhccc
Confidence 5799999999999999999996 9999999998866 3456789999999999999999999987655
Q ss_pred cCcceEEEEeCCCccee-eeccCCC---CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 136 AYFDKMQVWDYTGLGYT-KYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
....+.++++...... ....... ......+.++|..|.+.|.+.+.+.++++++++++|++++.
T Consensus 69 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~----------- 136 (400)
T PRK06475 69 -TPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ----------- 136 (400)
T ss_pred -CcceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec-----------
Confidence 3445555543322111 1111000 01112346899999999999998765599999999999976
Q ss_pred CCccccccccCCeeEEEe---CCCcEEEeeE-EEecCCCchhhhhhCCCccCCCC-CceEEEEEEEecCC----------
Q 010225 212 TPSATTLFTKGHLAKLDL---SDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE---------- 276 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~---~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~---------- 276 (514)
.++.+++++ .+++++.||+ |+|||.+|.||+.++.. ...| +..++.+.++.+..
T Consensus 137 ---------~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 205 (400)
T PRK06475 137 ---------TGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFS--KARFSGHIAWRTTLAADALPASFLSAMPE 205 (400)
T ss_pred ---------CCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCC--CCCcCCceEEEEEeehhhcchhhhhhccc
Confidence 335566665 3445799999 99999999999998652 2333 56666666654321
Q ss_pred CcceEEEecCCCceEEeecCCCceEEEEEcC-ccchHH-hh-CCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccc
Q 010225 277 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMN-PKDASD-CK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353 (514)
Q Consensus 277 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (514)
......++.+++++..+|++++....++... ...... .. ..+. +.+.+.+. +|.+... .
T Consensus 206 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~-----------~-- 267 (400)
T PRK06475 206 HKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDK----AHLKSIYA-DWNKPVL-----------Q-- 267 (400)
T ss_pred CCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCH----HHHHHHhc-CCChHHH-----------H--
Confidence 1223456678899999999876443333222 111111 11 1122 23333333 4544311 1
Q ss_pred cCccccccccccCCCceeeeccceeeeeccccccccc-ccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh
Q 010225 354 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 432 (514)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~ 432 (514)
+.+.......||+......+| ..+||+|||||||+++|+.|||+|+||+||..|+++|..
T Consensus 268 ----------------~i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~--- 328 (400)
T PRK06475 268 ----------------ILAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS--- 328 (400)
T ss_pred ----------------HHhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc---
Confidence 111222334578776665555 468999999999999999999999999999999999963
Q ss_pred cCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225 433 VGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA 486 (514)
Q Consensus 433 ~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 486 (514)
.++ ..+|+.|++.|+++++.++..++. ...+...+++....|+..+...
T Consensus 329 --~~~--~~aL~~Ye~~R~~r~~~~~~~s~~-~~~~~~~~~~~~~~r~~~~~~~ 377 (400)
T PRK06475 329 --DDQ--SAGLKRFDSVRKERIAAVAKRGQL-NRFAYHATGIFALGRNMLFAIR 377 (400)
T ss_pred --CCH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHhhc
Confidence 144 689999999999999999999874 4455445677888899888655
No 33
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=9.4e-40 Score=340.09 Aligned_cols=338 Identities=18% Similarity=0.200 Sum_probs=253.9
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
+..+||+||||||+||++|+.|++. |++|+||||.+.+ ...+++..++++++++|+.+|+++.+..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~----Gi~V~llEr~~~~----------~~~gra~~l~~~tle~L~~lGl~~~l~~ 68 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLC----GLNTVIVDKSDGP----------LEVGRADALNARTLQLLELVDLFDELYP 68 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHc----CCCEEEEeCCCcc----------cccccceEeCHHHHHHHHhcChHHHHHh
Confidence 3468999999999999999999996 9999999999876 3456788999999999999999999877
Q ss_pred hhccCcceEEEEeCCCcceee---eccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225 133 HRHAYFDKMQVWDYTGLGYTK---YNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
... +.....+|......... +........+..+.+++..++..|.+.+++.| ++|+++++|+++++
T Consensus 69 ~~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~--------- 137 (487)
T PRK07190 69 LGK-PCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIEL--------- 137 (487)
T ss_pred hCc-cceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE---------
Confidence 554 45555556533221101 00001011223467889999999999999887 99999999999987
Q ss_pred CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC--CC-cceEEEec
Q 010225 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--EN-YCAWQRFL 285 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 285 (514)
+++.+.+.+.+|++++|++ |+|||.+|.+|+.+++++.+..+...+....+..+. +. .....+..
T Consensus 138 -----------~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 206 (487)
T PRK07190 138 -----------NQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQA 206 (487)
T ss_pred -----------cCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEc
Confidence 3355667777888999999 999999999999999988876665555555444432 22 12222234
Q ss_pred CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225 286 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 365 (514)
Q Consensus 286 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
+.+.++++|.+++..++..... ....+.+++.+.+...+. ++.
T Consensus 207 ~~g~~~~~p~~~~~~r~~~~~~------~~~~t~~~~~~~l~~~~~-~~~------------------------------ 249 (487)
T PRK07190 207 ETSDVAWIPREGEIDRFYVRMD------TKDFTLEQAIAKINHAMQ-PHR------------------------------ 249 (487)
T ss_pred CCCCEEEEECCCCEEEEEEEcC------CCCCCHHHHHHHHHHhcC-CCC------------------------------
Confidence 6788999999877665443321 123466677777765332 000
Q ss_pred CCCceeeeccceeeeecccccccccc-cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHH
Q 010225 366 VPPRVVKLASERMVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 444 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~ 444 (514)
+ . .....+...|++..+.+++|. .|||+|+|||||.++|+.|||+|++|+||.+|+|+|...++.. +...+|+
T Consensus 250 ~--~-~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~---a~~~lLd 323 (487)
T PRK07190 250 L--G-FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG---ASPELLQ 323 (487)
T ss_pred C--c-eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHH
Confidence 0 0 112334557999999999997 7999999999999999999999999999999999999887643 3489999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225 445 KYEAERKPANIVMMAVLDGFQKAYS 469 (514)
Q Consensus 445 ~Y~~~r~~~~~~~~~~~~~~~~~~~ 469 (514)
.|+.+|++.+..++..++.+.++..
T Consensus 324 tY~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 324 SYEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998888764
No 34
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-40 Score=333.55 Aligned_cols=363 Identities=20% Similarity=0.227 Sum_probs=260.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
+..||+||||||+||++|+.|++. |++|+|||+.+.+ ...+.+..+++++.++|+++|+++.+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~----g~~v~v~E~~~~~----------~~~g~g~~l~~~~~~~l~~~gl~~~~~~~ 68 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA----GIAVDLVEIDPEW----------RVYGAGITLQGNALRALRELGVLDECLEA 68 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCC----------ccCCceeeecHHHHHHHHHcCCHHHHHHh
Confidence 457999999999999999999996 9999999999876 33466899999999999999999988876
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCC--CcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
.. +...+.+++..+.....++..... ..+....+.|..|.+.|.+.+.+.+ ++|+++++|++++.
T Consensus 69 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~----------- 135 (375)
T PRK06847 69 GF-GFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQ----------- 135 (375)
T ss_pred CC-CccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEE-----------
Confidence 55 566777776554433232211111 1122456899999999999998876 99999999999976
Q ss_pred CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh-CCCccCCCCCceEEEEEEEecCCCcceEEEecCCCc
Q 010225 212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP 289 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 289 (514)
.++.+.+.+.+|+++.||+ |+|||.+|.+|+.+ +........+...+.+.++..........+..+++.
T Consensus 136 ---------~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T PRK06847 136 ---------DDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTK 206 (375)
T ss_pred ---------cCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcE
Confidence 3456788888999999999 99999999999988 433333333444555555543332233455567788
Q ss_pred eEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCc
Q 010225 290 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR 369 (514)
Q Consensus 290 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (514)
+.++|.+++...+++..+.... ...+.+.+.+.+.+.+. .|.++. ...+...
T Consensus 207 ~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~-------------- 258 (375)
T PRK06847 207 AGVVPLSEDLMYLFVTEPRPDN---PRIEPDTLAALLRELLA-PFGGPV----------LQELREQ-------------- 258 (375)
T ss_pred EEEEcCCCCeEEEEEeccCccc---ccCChHHHHHHHHHHHh-hcCchH----------HHHHHHh--------------
Confidence 8899998775544443332221 22345566666666554 443310 0000000
Q ss_pred eeeeccceeeeeccccc-ccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 010225 370 VVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 448 (514)
Q Consensus 370 ~~~~~~~~~~~p~~~~~-~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~ 448 (514)
+ ........+|+.... ..+|..+||+|+|||||.++|+.|||+|+||+||..|+++|.+. .+ .+.+|+.|++
T Consensus 259 ~-~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----~~--~~~al~~Y~~ 331 (375)
T PRK06847 259 I-TDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----DS--LEAALQAYYA 331 (375)
T ss_pred c-CCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----Cc--HHHHHHHHHH
Confidence 0 000111224544433 45688999999999999999999999999999999999999762 23 3789999999
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHhc
Q 010225 449 ERKPANIVMMAVLDGFQKAYSVDFG---PLNILRAAAFHGAQ 487 (514)
Q Consensus 449 ~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~~~ 487 (514)
+|+++++.++..++.+..++....+ ....+|++++.++.
T Consensus 332 ~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T PRK06847 332 RRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLAQ 373 (375)
T ss_pred HHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhcC
Confidence 9999999999999999999876655 77788888776554
No 35
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=5.9e-40 Score=336.62 Aligned_cols=357 Identities=18% Similarity=0.246 Sum_probs=254.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
++.||+||||||+||++|+.|++. |++|+||||.+.+ ...++++.+++++.++|+++|+++.+...
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~----g~~v~v~Er~~~~----------~~~g~gi~l~~~~~~~l~~lg~~~~~~~~ 68 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ----GIKVKLLEQAAEI----------GEIGAGIQLGPNAFSALDALGVGEAARQR 68 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC----CCcEEEEeeCccc----------ccccceeeeCchHHHHHHHcCChHHHHhh
Confidence 467999999999999999999996 9999999999876 33466899999999999999999988775
Q ss_pred hccCcceEEEEeCC-CcceeeeccCCC---CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225 134 RHAYFDKMQVWDYT-GLGYTKYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
.. ....+.+++.. +.....++.... ......+.++|.+|.+.|.+.+.+.++++++++++|++++.
T Consensus 69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--------- 138 (396)
T PRK08163 69 AV-FTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--------- 138 (396)
T ss_pred cc-CCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec---------
Confidence 54 56667776542 222222211110 11123457899999999999998876799999999999976
Q ss_pred CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC-----cceEEE
Q 010225 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQR 283 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 283 (514)
.++.+.+.+.+|+++.||+ |+|||.+|.+|+.+... .....+...+.+.++..... .....+
T Consensus 139 -----------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (396)
T PRK08163 139 -----------DGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLW 206 (396)
T ss_pred -----------CCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEE
Confidence 3456788888998999999 99999999999988432 22334455666666543211 123334
Q ss_pred ecCCCceEEeecCCCc-eEEEEEcCccchHHh--hCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccc
Q 010225 284 FLPAGPIALLPIGDNF-SNIVWTMNPKDASDC--KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 360 (514)
Q Consensus 284 ~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (514)
..+.++++.+|+.++. .+++|.......... ...+. +.+.+.|. +|.+... +.++.
T Consensus 207 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~-------~~~~~--------- 265 (396)
T PRK08163 207 AGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSK----EEVLSYFE-GIHPRPR-------QMLDK--------- 265 (396)
T ss_pred EcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCH----HHHHHHHc-CCChHHH-------HHHhc---------
Confidence 5677888999997764 566666543322111 11122 23334343 3333210 01100
Q ss_pred cccccCCCceeeeccceeeeecc-cccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcch
Q 010225 361 KECFEVPPRVVKLASERMVFPLS-LKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE 439 (514)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~ 439 (514)
......+++. ..+..+|..+||+|+|||||.|+|+.|||+|+||+||..|+++|... ..++
T Consensus 266 -------------~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~-- 327 (396)
T PRK08163 266 -------------PTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DGDA-- 327 (396)
T ss_pred -------------CCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---cccH--
Confidence 0011112221 12456788999999999999999999999999999999999999753 2233
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225 440 ASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA 486 (514)
Q Consensus 440 ~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 486 (514)
..+|+.|+++|++++..++..++.+..+++.. +....+|+.++...
T Consensus 328 ~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~ 373 (396)
T PRK08163 328 EAAFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGR 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhcc
Confidence 78999999999999999999999999999876 67788888777655
No 36
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=2.4e-39 Score=339.39 Aligned_cols=402 Identities=18% Similarity=0.132 Sum_probs=262.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
..+||+||||||+|+++|+.|++. |++|+|+||+.... .....|..+++++.++|+++|+++.+...
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~----G~~V~VlEr~~~~~---------~~r~~G~~L~p~g~~~L~~LGL~d~l~~i 98 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ----GRKVLMLERDLFSK---------PDRIVGELLQPGGVNALKELGMEECAEGI 98 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc----CCEEEEEccccccc---------cchhhhhhcCHHHHHHHHHCCChhhHhhc
Confidence 478999999999999999999996 99999999976210 11235678999999999999999988766
Q ss_pred hccCcceEEEEeCCCcc-eeeeccCCCCCcccEEEEehHHHHHHHHHHH--hcCCCceEEcCCeeEEEeeCCCC---CCc
Q 010225 134 RHAYFDKMQVWDYTGLG-YTKYNARDVNKEILGCVVENKVLHSSLLSCM--QNTEFQKTIYPSRLTSMALLPSS---SSI 207 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~g~v~v~~~~~v~~v~~~~~~---~~~ 207 (514)
.. ++..+.+++.++.. ...+ .....++.+++..|.+.|++.+ ...++++++.+ +|+++..++.. ...
T Consensus 99 ~~-~~~~~~v~~~~G~~~~i~~-----~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~ 171 (567)
T PTZ00367 99 GM-PCFGYVVFDHKGKQVKLPY-----GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAY 171 (567)
T ss_pred Cc-ceeeeEEEECCCCEEEecC-----CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeE
Confidence 65 57778887754432 2222 2233467789999999999888 33456888754 78887542110 011
Q ss_pred ccCCCCcc------ccc-cccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEE-ecCCC-
Q 010225 208 SVDSTPSA------TTL-FTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN- 277 (514)
Q Consensus 208 ~~~~~~~~------~~~-~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~- 277 (514)
+++-..+. +.+ .+.+....+...++.+++||+ |+|||.+|.+|+.++.......+...+....+. ...+.
T Consensus 172 gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~~ 251 (567)
T PTZ00367 172 GVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKE 251 (567)
T ss_pred EEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCCC
Confidence 11000000 000 000001112222366899999 999999999999997654433343333222222 12222
Q ss_pred cceEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcc
Q 010225 278 YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT 357 (514)
Q Consensus 278 ~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
.....++.++++++++|++++..++.+..+..... +.++..+.+.+.+...+.+. ..+.+...+
T Consensus 252 ~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~-------l~~~f~~~l---- 315 (567)
T PTZ00367 252 QHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPEN-------MRESFIRAS---- 315 (567)
T ss_pred CeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHH-------HHHHHHHhh----
Confidence 23344578899999999998876655444322110 11112222222111001000 000010000
Q ss_pred ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh-cCCC
Q 010225 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA-VGAD 436 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~-~~~~ 436 (514)
........+|....+...+..++++|||||||+++|++|||+|+||+||..|++.|..... .+.|
T Consensus 316 --------------~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d 381 (567)
T PTZ00367 316 --------------KDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSID 381 (567)
T ss_pred --------------cccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 0001122355555555667788999999999999999999999999999999999986432 1112
Q ss_pred cc----hHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCC
Q 010225 437 IG----EASLLK----KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPL 508 (514)
Q Consensus 437 ~~----~~~~l~----~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~ 508 (514)
.+ ...+|+ .|++.|++++..++..++.++++|+. ..+|+..|..+..-.....-.+..++|+.+.|+
T Consensus 382 ~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p~ 456 (567)
T PTZ00367 382 QNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSGLDPSPG 456 (567)
T ss_pred chhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcCCCCCcH
Confidence 21 156677 99999999999999999999999987 479999999998888888999999999999987
Q ss_pred CC
Q 010225 509 PL 510 (514)
Q Consensus 509 ~~ 510 (514)
.+
T Consensus 457 ~l 458 (567)
T PTZ00367 457 GL 458 (567)
T ss_pred HH
Confidence 54
No 37
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=3.8e-40 Score=332.78 Aligned_cols=331 Identities=24% Similarity=0.377 Sum_probs=226.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
++||+||||||+||++|+.|+++ |++|+||||++.+ ...+++..+.++++++|+++|+++.+....
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~----G~~v~i~E~~~~~----------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 66 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA----GIDVTIIERRPDP----------RPKGRGIGLSPNSLRILQRLGLLDEILARG 66 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT----TCEEEEEESSSSC----------CCSSSSEEEEHHHHHHHHHTTEHHHHHHHS
T ss_pred CceEEEECCCHHHHHHHHHHHhc----ccccccchhcccc----------cccccccccccccccccccccchhhhhhhc
Confidence 37999999999999999999997 9999999999987 445578999999999999999999988876
Q ss_pred cc-CcceEEEEeC--CC-------cceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCC
Q 010225 135 HA-YFDKMQVWDY--TG-------LGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSS 204 (514)
Q Consensus 135 ~~-~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~ 204 (514)
.. ......++.. +. .....+. ........+.++|..|.+.|.+.+++.| ++++++++|++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~---- 139 (356)
T PF01494_consen 67 SPHEVMRIFFYDGISDSRIWVENPQIREDME--IDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQ---- 139 (356)
T ss_dssp EEECEEEEEEEEETTTSEEEEEEEEEEEECH--STSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEE----
T ss_pred ccccceeeEeecccCCccceeeecccceeee--ccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccc----
Confidence 42 2233344433 10 0111111 1123445678999999999999999988 99999999999987
Q ss_pred CCcccCCCCccccccccCCeeEEEe--C-CCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCC--ceEEEEEEEecCC
Q 010225 205 SSISVDSTPSATTLFTKGHLAKLDL--S-DGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYS--QNAIICTVEHNKE 276 (514)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~v~~--~-~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~--~~~~~~~~~~~~~ 276 (514)
+.+.+.+.+ . +|. +++||+ |+|||.+|.+|+.++......... ..++...+....+
T Consensus 140 ----------------d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (356)
T PF01494_consen 140 ----------------DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLS 203 (356)
T ss_dssp ----------------ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSH
T ss_pred ----------------cccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccc
Confidence 233443333 3 343 699999 999999999999998775444322 2222222322222
Q ss_pred --Cc-ceEEEecCCCceEEeecCC-CceEEEEEcCccc--hHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccccc
Q 010225 277 --NY-CAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKD--ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350 (514)
Q Consensus 277 --~~-~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (514)
.. ..+....+.+.++++|..+ +...+.+...... .........+.+.+.+.+.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 264 (356)
T PF01494_consen 204 DPWEDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFG------------------- 264 (356)
T ss_dssp TTTSCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHH-------------------
T ss_pred cccccccccccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccc-------------------
Confidence 12 2444444556678999988 4444444443322 122222233455555544332
Q ss_pred ccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHh
Q 010225 351 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG 430 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~ 430 (514)
+.. . .........|++..+...+|..+||+|||||||.|+|+.|||+|+||+||..|+++|..+
T Consensus 265 ~~~------------~----~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~ 328 (356)
T PF01494_consen 265 PDL------------L----ETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAA 328 (356)
T ss_dssp TCH------------H----HHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------------c----ccccccccccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHH
Confidence 000 0 001223345777777788899999999999999999999999999999999999999998
Q ss_pred hhcCCCcchHHHHHHHHHHhhHHHHHHHHH
Q 010225 431 IAVGADIGEASLLKKYEAERKPANIVMMAV 460 (514)
Q Consensus 431 ~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~ 460 (514)
++. . ..+.+|+.|+++|+++++++++.
T Consensus 329 ~~g-~--~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 329 LKG-E--ASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HTT-S--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-C--cHHHHHHHHHHHHHHHHHHHHhC
Confidence 763 2 34789999999999999998875
No 38
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=5.4e-39 Score=325.24 Aligned_cols=357 Identities=17% Similarity=0.159 Sum_probs=248.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.||+||||||+|+++|+.|++. |++|+|||+.+.+ ...+.+..+.++++++|+++|+++.+.+...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~----G~~v~viE~~~~~----------~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~ 67 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH----GYSVTMVERHPGL----------RPGGQAIDVRGPALDVLERMGLLAAAQEHKT 67 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCC----------CCCceeeeeCchHHHHHHhcCCHHHHHhhcc
Confidence 3899999999999999999996 9999999999876 3345678889999999999999998876554
Q ss_pred cCcceEEEEeCCCcceeeeccC-CC--CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 136 AYFDKMQVWDYTGLGYTKYNAR-DV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
.+..+.+++.++......... .. ......+.+.|.+|.+.|.+.+. .+ ++++++++|++++.
T Consensus 68 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~~-v~i~~~~~v~~i~~------------ 132 (372)
T PRK05868 68 -RIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-PS-VEYLFDDSISTLQD------------ 132 (372)
T ss_pred -CccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-CC-cEEEeCCEEEEEEe------------
Confidence 667777776554322211110 01 11122467889999998876553 34 99999999999976
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccC--CCCCceEEEEEEEecCCCcceEEE-ecCCC
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTG--WSYSQNAIICTVEHNKENYCAWQR-FLPAG 288 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g 288 (514)
.++.++|++.||++++||+ |+|||.+|.+|+.+...... ..++.......++...+......+ +.++.
T Consensus 133 --------~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~ 204 (372)
T PRK05868 133 --------DGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDST 204 (372)
T ss_pred --------cCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCc
Confidence 4467889999999999999 99999999999998443322 123333333333332222223332 35666
Q ss_pred ceEEeecCCC-ceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225 289 PIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 366 (514)
Q Consensus 289 ~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
.+.++|..++ ..+.++........ ......+...+.+.+.|. .+|... . ..+. +.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~w~~~-~--------l~~~-~~------------ 261 (372)
T PRK05868 205 MAGVYSARNNTEARAALAFMDTELR-IDYRDTEAQFAELQRRMAEDGWVRA-Q--------LLHY-MR------------ 261 (372)
T ss_pred EEEEEecCCCCceEEEEEEecCCcc-cccCChHHHHHHHHHHHhhCCCchH-H--------HHhh-cc------------
Confidence 7788888764 43444433221111 011223455666666664 134321 0 1111 00
Q ss_pred CCceeeeccceeeee-cccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225 367 PPRVVKLASERMVFP-LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 445 (514)
Q Consensus 367 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~ 445 (514)
. . ....|+ +...++++|..|||+|+|||||+++|+.|||+|+||+||+.|+++|... ..++ +.+|+.
T Consensus 262 -----~-~-~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~~--~~al~~ 329 (372)
T PRK05868 262 -----S-A-PDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDDY--QLGFAN 329 (372)
T ss_pred -----c-C-CceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCCH--HHHHHH
Confidence 0 0 001133 3444567899999999999999999999999999999999999999763 2244 889999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 010225 446 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFH 484 (514)
Q Consensus 446 Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 484 (514)
|++.++++....+.........|...+.+..++|+..|.
T Consensus 330 ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~ 368 (372)
T PRK05868 330 YHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSIT 368 (372)
T ss_pred HHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence 999999999999999999999999888888888876654
No 39
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=339.44 Aligned_cols=343 Identities=22% Similarity=0.293 Sum_probs=241.5
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
+.+..+||+||||||+||++|+.|++. |++|+||||.+.. ...+++..++++++++|+++|+++++
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~----G~~v~viEr~~~~----------~~~~ra~~l~~r~~e~L~~lGl~~~l 68 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRR----GVDSILVERKDGT----------AFNPKANTTSARSMEHFRRLGIADEV 68 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CCCCccccCCHHHHHHHHhcChHHHH
Confidence 456679999999999999999999996 9999999998765 45677899999999999999999999
Q ss_pred HhhhccC--cceEEEE-eCCCcceeeeccCCC--------------CCcccEEEEehHHHHHHHHHHHhcCCCceEEcCC
Q 010225 131 QQHRHAY--FDKMQVW-DYTGLGYTKYNARDV--------------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS 193 (514)
Q Consensus 131 ~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~ 193 (514)
.+.+... .....++ ...+.....+..... ......+.+++..+...|.+.+++.++++|++++
T Consensus 69 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~ 148 (545)
T PRK06126 69 RSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGH 148 (545)
T ss_pred HhhcCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEecc
Confidence 8865421 0111111 111211111111000 1122346789999999999999877669999999
Q ss_pred eeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEE
Q 010225 194 RLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAI 267 (514)
Q Consensus 194 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~ 267 (514)
+|++++. +++.+++.+ .+|+ ++.+|+ |+|||.+|.||+.+++...+..+....+
T Consensus 149 ~v~~i~~--------------------~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~ 208 (545)
T PRK06126 149 RLTDFEQ--------------------DADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDL 208 (545)
T ss_pred EEEEEEE--------------------CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEE
Confidence 9999987 334455554 3354 699999 9999999999999998887766554444
Q ss_pred EEEEEecC-----CCcc--eEEEecCCCceEEeecCCCc-eEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCC
Q 010225 268 ICTVEHNK-----ENYC--AWQRFLPAGPIALLPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPK 339 (514)
Q Consensus 268 ~~~~~~~~-----~~~~--~~~~~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
...+..+. .... .+..+.++.+..+++.+++. +.+. ...... .....+.+++.+.+.+.+. ..
T Consensus 209 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-- 279 (545)
T PRK06126 209 SIYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRDEWLFH-QLRGGE--DEFTIDDVDARAFVRRGVG----ED-- 279 (545)
T ss_pred EEEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCCeEEEE-EecCCC--CCCCCCHHHHHHHHHHhcC----CC--
Confidence 44444321 1112 23334466666777775543 2222 122221 1123456677777776442 10
Q ss_pred CCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHH
Q 010225 340 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 419 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~d 419 (514)
++..+... ..|++....+++|..|||+|+|||||.++|+.|||+|+||+|
T Consensus 280 --------------------------~~~~i~~~----~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieD 329 (545)
T PRK06126 280 --------------------------IDYEVLSV----VPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGD 329 (545)
T ss_pred --------------------------CCeEEEee----cccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHH
Confidence 11111111 235666677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010225 420 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 469 (514)
Q Consensus 420 a~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~ 469 (514)
|.+|+++|...++. .+.+.+|+.|+++|++++..++..+......+.
T Consensus 330 a~~La~~La~~~~~---~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 330 AVNLAWKLAAVLNG---WAGPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred HHHHHHHHHHHHcC---CCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 99999999987753 234789999999999999999999988877665
No 40
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-38 Score=323.98 Aligned_cols=340 Identities=19% Similarity=0.233 Sum_probs=230.0
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
+||+||||||+||++|+.|++. |++|+||||.+.+ ...+.+..++++++++|+++|+++.+.....
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~----------~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~ 66 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR----GIEVVVFEAAPEL----------RPLGVGINLLPHAVRELAELGLLDALDAIGI 66 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEEcCCcc----------cccCcceeeCchHHHHHHHCCCHHHHHhhCC
Confidence 4899999999999999999996 9999999999866 3456789999999999999999999877555
Q ss_pred cCcceEEEEeCCCcceeeeccC-CCCCcccEEEEehHHHHHHHHHHHhc-CCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 136 AYFDKMQVWDYTGLGYTKYNAR-DVNKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
+...+.+++..+......... ......+.+.++|..|.+.|.+.+.+ .|..+|+++++|++++.
T Consensus 67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~------------- 132 (413)
T PRK07538 67 -RTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ------------- 132 (413)
T ss_pred -CCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe-------------
Confidence 556677776544322221111 11122335679999999999999865 46457999999999976
Q ss_pred ccccccccCCeeEEEeCCC-----cEEEeeE-EEecCCCchhhhhhCCCccCCCC-CceEEEEEEEecCCC-cceEEEec
Q 010225 214 SATTLFTKGHLAKLDLSDG-----TSLYAKL-VGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKEN-YCAWQRFL 285 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g-----~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 285 (514)
..+.+.+.+.++ .+++||+ |+|||.+|.+|+.++.......| +...+.+.++.+... ...+..+.
T Consensus 133 -------~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g 205 (413)
T PRK07538 133 -------DADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAG 205 (413)
T ss_pred -------cCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEc
Confidence 223344554432 4799999 99999999999999755433333 344444444433221 11122232
Q ss_pred -CCCceEEeecCCC-----ceEEEEEcCccch----HHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccC
Q 010225 286 -PAGPIALLPIGDN-----FSNIVWTMNPKDA----SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 355 (514)
Q Consensus 286 -~~g~~~~~p~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (514)
.++.++++|+.++ ...+.|....... ......+.+...+.+.+.|. +|..... +
T Consensus 206 ~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~-------- 269 (413)
T PRK07538 206 HLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWL-------D-------- 269 (413)
T ss_pred CCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhc-CCCCCcc-------c--------
Confidence 3567888998653 2344454432111 11111122233344444343 3322100 0
Q ss_pred ccccccccccCCCceeeeccceeeeeccccc-ccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcC
Q 010225 356 ATLSAKECFEVPPRVVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 434 (514)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~ 434 (514)
+++ +.........||+.... .++|..+||+|+|||||.|+|+.|||+|+||+||..|+++|... +
T Consensus 270 ----------~~~-~i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~ 335 (413)
T PRK07538 270 ----------VPA-LIRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---G 335 (413)
T ss_pred ----------HHH-HHhcCcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---C
Confidence 000 11111223346766543 67899999999999999999999999999999999999999874 2
Q ss_pred CCcchHHHHHHHHHHhhHHHHHHHHHHHH
Q 010225 435 ADIGEASLLKKYEAERKPANIVMMAVLDG 463 (514)
Q Consensus 435 ~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~ 463 (514)
+ ...+|+.|+++|++++..++..++.
T Consensus 336 -~--~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 336 -D--PEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred -C--HHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 3 3789999999999999999998877
No 41
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=2.3e-37 Score=315.52 Aligned_cols=375 Identities=15% Similarity=0.087 Sum_probs=248.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
.+||+||||||+|+++|+.|++. |++|+||||.+... .....+...++++++++|+++|+++++...+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~--------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~ 69 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQSRDY--------VLGRIRAGVLEQGTVDLLREAGVDERMDREG 69 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC----CCCEEEEECCCCcc--------cCCceeEeeECHHHHHHHHHCCChHHHHhcC
Confidence 57999999999999999999996 99999999998531 0112345669999999999999999998765
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. +...+.+++........+... ..........+..+...|.+.+.+.+ +.++++++++.+..
T Consensus 70 ~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~v~~~~-------------- 131 (390)
T TIGR02360 70 L-VHEGTEIAFDGQRFRIDLKAL--TGGKTVMVYGQTEVTRDLMEAREAAG-LTTVYDADDVRLHD-------------- 131 (390)
T ss_pred c-eecceEEeeCCEEEEEecccc--CCCceEEEeCHHHHHHHHHHHHHhcC-CeEEEeeeeEEEEe--------------
Confidence 4 566666665443223333221 11122223467889999999988876 88999998887753
Q ss_pred cccccccCCeeEEEeC-CCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCc--eEEEEEEEecCCCcceEEEecCCC
Q 010225 215 ATTLFTKGHLAKLDLS-DGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVEHNKENYCAWQRFLPAG 288 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~-~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g 288 (514)
.++..+.|.+. +|+ +++||+ |+|||.+|.||++++........+. ..+.+.+....+......+..+++
T Consensus 132 -----~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 206 (390)
T TIGR02360 132 -----LAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHER 206 (390)
T ss_pred -----cCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCC
Confidence 02234556664 775 699999 9999999999999854332111111 122332321111111122334566
Q ss_pred ceEEeecCC-CceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225 289 PIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 367 (514)
Q Consensus 289 ~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
.+.++|+.+ +...+.+..+... .......+.+.+.+.+.+. +. ....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~----~~----------~~~~---------------- 254 (390)
T TIGR02360 207 GFALCSMRSATRSRYYVQVPLTD--KVEDWSDDRFWAELKRRLP----SE----------AAER---------------- 254 (390)
T ss_pred ceEEEeccCCCcceEEEEcCCCC--ChhhCChhHHHHHHHHhcC----ch----------hhhh----------------
Confidence 677777754 3333445444322 1233445556666665432 10 0000
Q ss_pred Cceeeec-cceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHH
Q 010225 368 PRVVKLA-SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 446 (514)
Q Consensus 368 ~~~~~~~-~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y 446 (514)
+.... .....+|+....+.+|..|||+|+|||||.++|+.|||+|+||+||..|+++|...... + ...+|+.|
T Consensus 255 --~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~--~--~~~al~~Y 328 (390)
T TIGR02360 255 --LVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE--G--SSAGIEGY 328 (390)
T ss_pred --hccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc--C--hHHHHHHH
Confidence 00000 01233566666678899999999999999999999999999999999999999876432 2 37899999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCCc---hHHHHHHHHHHHhccChhHHHHHHHHhhc
Q 010225 447 EAERKPANIVMMAVLDGFQKAYSVDFG---PLNILRAAAFHGAQYISPLKRNIISYASG 502 (514)
Q Consensus 447 ~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~l~~~~~~~~~~~~~~~~~~g 502 (514)
++.|++++..++..++.+.++++.-.. ....++.+-|..+-..|.-+..+..+-.|
T Consensus 329 ~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (390)
T TIGR02360 329 SARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYVG 387 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhccC
Confidence 999999999999999999999876432 33344455555555566666666666555
No 42
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=319.82 Aligned_cols=340 Identities=20% Similarity=0.167 Sum_probs=231.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
++.++|+||||||+||++|+.|++. |++|+||||.+... ...+.++.++++++++|+++|+++.. .
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~g~gi~l~~~~~~~l~~lg~~~~~-~ 69 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA----GWDVDVFERSPTEL---------DGRGAGIVLQPELLRALAEAGVALPA-D 69 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc---------CCCCceeEeCHHHHHHHHHcCCCccc-c
Confidence 4568999999999999999999996 99999999987431 23456788999999999999997654 3
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
... +.....+++.++........ ....+.+..+.+.|.+.+ ++++|+++++|++++.
T Consensus 70 ~~~-~~~~~~~~~~~g~~~~~~~~-------~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~------------ 126 (386)
T PRK07236 70 IGV-PSRERIYLDRDGRVVQRRPM-------PQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQ------------ 126 (386)
T ss_pred ccc-CccceEEEeCCCCEeeccCC-------CccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEe------------
Confidence 332 44455555544422111110 112346788888888765 4478999999999987
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec---CCC-----cceEEE
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN---KEN-----YCAWQR 283 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~ 283 (514)
.++.++|.+.+|++++||+ |+|||.+|.+|+.+.........+...+.+.+... ... .....+
T Consensus 127 --------~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (386)
T PRK07236 127 --------DGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQ 198 (386)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEE
Confidence 4466889999999999999 99999999999998433332223444555544321 111 112233
Q ss_pred ecCCCceEEeecCC---------CceEEEEEcCccchHHh----h-------------CCCHHHHHHHHHHhhcCCCCCC
Q 010225 284 FLPAGPIALLPIGD---------NFSNIVWTMNPKDASDC----K-------------SMNEDDFVKILNHALDYGYGPH 337 (514)
Q Consensus 284 ~~~~g~~~~~p~~~---------~~~~~~~~~~~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
..++++++.+|+++ ...+++|..+....... . ....+.+.+.+.+.+...|.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (386)
T PRK07236 199 LGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV 278 (386)
T ss_pred EcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH
Confidence 45667888888764 23567776654331100 0 0012344555555443223332
Q ss_pred CCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhh
Q 010225 338 PKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF 417 (514)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al 417 (514)
. ..++ +.......++++....+.|..+||+|+|||||+++|+.|||+|+||
T Consensus 279 ~-----------~~~~------------------~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 329 (386)
T PRK07236 279 F-----------AELV------------------EATAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAA 329 (386)
T ss_pred H-----------HHHH------------------hhCcCchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHH
Confidence 1 1100 1111112234444445778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225 418 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD 471 (514)
Q Consensus 418 ~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~ 471 (514)
+||..|+++|.... .++ ..+|+.|++.|++++..++..++.+..+++..
T Consensus 330 eDA~~La~~L~~~~---~~~--~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 378 (386)
T PRK07236 330 ADAVALAEALAAAA---GDI--DAALAAWEAERLAVGAAIVARGRRLGARLQAQ 378 (386)
T ss_pred HHHHHHHHHHHhcc---cch--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998742 233 78999999999999999999999998887654
No 43
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=4.2e-38 Score=324.29 Aligned_cols=348 Identities=20% Similarity=0.274 Sum_probs=236.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
.+|+||||||+||++|+.|+++ | ++|+||||.+.. ...+.+..++++++++|+++|+.+.+....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~----g~~~v~v~Er~~~~----------~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~ 66 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH----SHLNVQLFEAAPAF----------GEVGAGVSFGANAVRAIVGLGLGEAYTQVA 66 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc----CCCCEEEEecCCcC----------CCCccceeeCccHHHHHHHcCChhHHHHHh
Confidence 3699999999999999999997 6 699999999876 345678999999999999999988877644
Q ss_pred cc---CcceEEE--EeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225 135 HA---YFDKMQV--WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 135 ~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
.. ......+ .+......... ..........++|..|.+.|.+.+.. +.++++++|++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~R~~l~~~L~~~~~~---~~v~~~~~v~~i~~--------- 131 (414)
T TIGR03219 67 DSTPAPWQDIWFEWRNGSDASYLGA---TIAPGVGQSSVHRADFLDALLKHLPE---GIASFGKRATQIEE--------- 131 (414)
T ss_pred cCCCccCcceeEEEEecCccceeee---eccccCCcccCCHHHHHHHHHHhCCC---ceEEcCCEEEEEEe---------
Confidence 21 1122111 12211111111 00111112468999999999988742 56899999999986
Q ss_pred CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCC-----ccCCCCCceEEEEEEEecCC-------
Q 010225 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFK-----TTGWSYSQNAIICTVEHNKE------- 276 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~-----~~~~~~~~~~~~~~~~~~~~------- 276 (514)
.++.++|.+.+|.+++||+ |+|||.+|.||+.+... ......+..++.+.++....
T Consensus 132 -----------~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~ 200 (414)
T TIGR03219 132 -----------QAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAA 200 (414)
T ss_pred -----------cCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccc
Confidence 3456889999999999999 99999999999988421 22223356666666653210
Q ss_pred ---C---cceEEEecCCCceEEeecCCCce-EEEEEcCccchH-----HhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010225 277 ---N---YCAWQRFLPAGPIALLPIGDNFS-NIVWTMNPKDAS-----DCKSMNEDDFVKILNHALDYGYGPHPKSISSG 344 (514)
Q Consensus 277 ---~---~~~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (514)
. .....++.++++++++|+.++.. ++++........ .......+...+.+.+.|. +|.+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v~----- 274 (414)
T TIGR03219 201 GLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFA-GWGDAAR----- 274 (414)
T ss_pred cccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhc-CCCHHHH-----
Confidence 0 11223456778888999988764 334433221100 0011112223344444444 4543311
Q ss_pred ccccccccccCccccccccccCCCceeeeccceeeeecccc-cccccccCcEEEEcccccccCCcccccchhhhHHHHHH
Q 010225 345 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL 423 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~L 423 (514)
+.++. ......|+++.. ..++|..+||+|+|||||+|.|+.|||+|+||+||..|
T Consensus 275 --~~~~~----------------------~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~L 330 (414)
T TIGR03219 275 --ALLEC----------------------IPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFL 330 (414)
T ss_pred --HHHHh----------------------CCCCCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHH
Confidence 11111 011112333332 36789999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchH
Q 010225 424 SRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL 475 (514)
Q Consensus 424 a~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (514)
+++|.....++.++ +.+|+.|++.|++++..++..++.+..+++..++..
T Consensus 331 a~~L~~~~~~~~~~--~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 380 (414)
T TIGR03219 331 ARLLGDTELEAGDL--PALLEAYDDVRRPRACRVQRTSREAGELYELRDPAV 380 (414)
T ss_pred HHHHHhhccCcchH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhc
Confidence 99998764433344 889999999999999999999999999998876543
No 44
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=1.1e-35 Score=312.92 Aligned_cols=368 Identities=17% Similarity=0.182 Sum_probs=238.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC--cHHH
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQYV 130 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~ 130 (514)
.+.++|+||||||+||++|+.|++. |++|+||||++... +......+++.|+++++++|+++|+ .+++
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~----Gi~V~V~Er~~~~~------r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l 148 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK----GFDVLVFEKDLSAI------RGEGKYRGPIQIQSNALAALEAIDIDVAEQV 148 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecccccc------ccccccCcccccCHHHHHHHHHcCcchHHHH
Confidence 5668999999999999999999996 99999999986320 0001112468899999999999985 3455
Q ss_pred HhhhccCcceEE-EEeC-CCcceeeeccCC---CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCC
Q 010225 131 QQHRHAYFDKMQ-VWDY-TGLGYTKYNARD---VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSS 205 (514)
Q Consensus 131 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~ 205 (514)
.+.+......+. +.+. .+.....++... ....+..+.++|..|.+.|.+.+.. ..++++++|++++.
T Consensus 149 ~~~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~----- 220 (668)
T PLN02927 149 MEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFED----- 220 (668)
T ss_pred HhhcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEE-----
Confidence 554432212221 2222 221122222110 0112346789999999999887632 34789999999986
Q ss_pred CcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC--cceEE
Q 010225 206 SISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAWQ 282 (514)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 282 (514)
.++.++|.+.+|+++.+|+ |+|||++|.+|+.+.........++.++.+.++..... ...+.
T Consensus 221 ---------------~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~ 285 (668)
T PLN02927 221 ---------------SGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYR 285 (668)
T ss_pred ---------------eCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceE
Confidence 4567889999999999999 99999999999998443333333556666665542221 11122
Q ss_pred E-ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccc
Q 010225 283 R-FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK 361 (514)
Q Consensus 283 ~-~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
. .....++..+|.+++...++++...... .....+...+.+.+.|. +|.+... +.+.. +
T Consensus 286 ~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~-~w~~~v~-------elI~~----t----- 345 (668)
T PLN02927 286 VFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFD-GWCDNVL-------DLLHA----T----- 345 (668)
T ss_pred EEEcCCeEEEEEcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhc-cCCHHHH-------HHHHh----C-----
Confidence 2 3455566666766665544333222111 11123456666666665 5644311 11111 0
Q ss_pred ccccCCCceeeeccceeeeeccccc-ccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc----CCC
Q 010225 362 ECFEVPPRVVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GAD 436 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~----~~~ 436 (514)
+. .....++++... ..+|..+||+|+|||||+|+|+.|||+|+||+||..|+++|..+++. +.+
T Consensus 346 -----~~------~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~ 414 (668)
T PLN02927 346 -----EE------DAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTP 414 (668)
T ss_pred -----cc------ccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCc
Confidence 00 001123444332 35788999999999999999999999999999999999999987532 122
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------CCCchHHHHHHHHHH
Q 010225 437 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYS-------VDFGPLNILRAAAFH 484 (514)
Q Consensus 437 ~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~~~l~ 484 (514)
...+.+|+.|+++|++++..++..++....++. ...++..+++.+.+.
T Consensus 415 ~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~ 469 (668)
T PLN02927 415 VDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVP 469 (668)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCC
Confidence 334789999999999999999998655555443 234566666665543
No 45
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=6.6e-33 Score=285.38 Aligned_cols=336 Identities=18% Similarity=0.182 Sum_probs=222.7
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
+..+++||+||||||+|+++|+.|++. |++|+|+||.... ....+..++ ...++++|+++.+
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~----G~~VlllEr~~~~-----------~k~cgg~i~---~~~l~~lgl~~~~ 96 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKG----GIETFLIERKLDN-----------AKPCGGAIP---LCMVGEFDLPLDI 96 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC-----------CCCcccccc---HhHHhhhcCcHHH
Confidence 455679999999999999999999996 9999999998632 223355554 3567788888776
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
... .+..+.++...+ ..+.+... .....+..+++|..|+++|.+++.+.| ++++.+ ++++++. +
T Consensus 97 ~~~---~i~~~~~~~p~~-~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~G-a~~~~~-~v~~i~~---------~ 160 (450)
T PLN00093 97 IDR---KVTKMKMISPSN-VAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNG-ATLING-LFTRIDV---------P 160 (450)
T ss_pred HHH---HhhhheEecCCc-eEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCC-CEEEec-eEEEEEe---------c
Confidence 653 334455554332 22333211 112223346999999999999999887 999876 5877764 0
Q ss_pred CCCccccccccCCeeEEEeCC-------C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-----
Q 010225 211 STPSATTLFTKGHLAKLDLSD-------G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK----- 275 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~-------g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~----- 275 (514)
.+ .++.+.|++.+ | .+++||+ |+|||.+|.+|+.++... ..+ ...+...++...
T Consensus 161 ~~--------~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~--~~~-~~~~~~~~~~~~~~~~~ 229 (450)
T PLN00093 161 KD--------PNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD--YDY-AIAFQERIKIPDDKMEY 229 (450)
T ss_pred cC--------CCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC--cce-eEEEEEEEeCChhhccc
Confidence 00 12344555422 3 4799999 999999999999997642 111 122222222221
Q ss_pred CCcceEEEe----cCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccc
Q 010225 276 ENYCAWQRF----LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW 351 (514)
Q Consensus 276 ~~~~~~~~~----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (514)
.......++ .|++|.|+||.++ ..++....... ..+...+.+.+.+.+. . .
T Consensus 230 ~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~--------------~ 284 (450)
T PLN00093 230 YEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVN------KPAIKKYQRATRNRAK----D--------------K 284 (450)
T ss_pred cCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccC------CCChHHHHHHHHHHhh----h--------------h
Confidence 111222222 3678999999985 45565543211 1233444444443211 0 0
Q ss_pred cccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhh
Q 010225 352 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 431 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~ 431 (514)
+.+. .+. ....+|+.....+++..++++|+|||||.++|++|+|++.||.+|..+|+.+.+++
T Consensus 285 l~~~-------------~~~----~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~ 347 (450)
T PLN00093 285 IAGG-------------KII----RVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS 347 (450)
T ss_pred cCCC-------------eEE----EEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 0000 011 12234555555667888999999999999999999999999999999999999988
Q ss_pred hcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCc
Q 010225 432 AVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 473 (514)
Q Consensus 432 ~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 473 (514)
+.+.+..+...|+.|++.++......+.....++++|..+++
T Consensus 348 ~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~ 389 (450)
T PLN00093 348 ENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNP 389 (450)
T ss_pred hcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 765333346789999999999999999999999999987433
No 46
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=276.87 Aligned_cols=350 Identities=19% Similarity=0.195 Sum_probs=203.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
+.+|+|||||++||++|+.|+|. |++|+|+|+...+ ...++++++.-++.++|+.+|+-+.+.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~----G~~v~VlE~~e~~----------R~~g~si~L~~ng~~aLkai~~~e~i~~~g 67 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK----GIDVVVLESREDP----------RGEGTSINLALNGWRALKAIGLKEQIREQG 67 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc----CCeEEEEeecccc----------ccCCcceeehhhHHHHHHHcccHHHHHHhc
Confidence 45899999999999999999996 9999999998877 344778889889999999999888888877
Q ss_pred ccCcceE-EEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCC----eeEEEeeCCCCCCccc
Q 010225 135 HAYFDKM-QVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS----RLTSMALLPSSSSISV 209 (514)
Q Consensus 135 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~----~v~~v~~~~~~~~~~~ 209 (514)
. +.... -....++.....+...+ ....-..+.|..+.+.++..+...++++++.+. ....++.
T Consensus 68 i-p~~~~v~~~~~sg~~~~~~~~~~--~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~--------- 135 (420)
T KOG2614|consen 68 I-PLGGRVLIHGDSGKEVSRILYGE--PDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIET--------- 135 (420)
T ss_pred C-cccceeeeecCCCCeeEecccCC--chHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeee---------
Confidence 7 54433 33333444344433211 111123344555555555555545545444433 2222221
Q ss_pred CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEE--EEecCCC-cceE----
Q 010225 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICT--VEHNKEN-YCAW---- 281 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~---- 281 (514)
.+....+++.||.++++|+ |||||++|.||+.++...+.+. ++.++++. ++...+. ...+
T Consensus 136 -----------~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~~-~~~ayrg~~~~~~~~~~~~~vf~~~~ 203 (420)
T KOG2614|consen 136 -----------LGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRYD-GSQAYRGLGFIPNGIPFGKKVFAIYG 203 (420)
T ss_pred -----------cccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcce-eEEEEeeeeeccCCCCcccceecccC
Confidence 4456778889999999999 9999999999999987764333 34445443 3333332 1111
Q ss_pred ----EEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcc
Q 010225 282 ----QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT 357 (514)
Q Consensus 282 ----~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
.++.+.....+++.-+......|+.+-++.+.... ...+....+.+.+. .+-.+++.+.
T Consensus 204 ~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~-~~~~v~~~~~en~~----------------d~i~~~~~e~ 266 (420)
T KOG2614|consen 204 NGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKK-TSLEVVDFFPENFP----------------DIIELTGEES 266 (420)
T ss_pred CeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhh-hHHHHHHHhHHhHH----------------HHHHhcChHH
Confidence 11222222222333333333333333333332222 11122222222111 1111122111
Q ss_pred ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc----
Q 010225 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV---- 433 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~---- 433 (514)
+..+..+ .+..||+-. .+...++|+|+|||||+|.|+.|||+|+|++|+.+|+++|.++.+.
T Consensus 267 i~~t~l~-----------~r~p~~~i~---~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~ 332 (420)
T KOG2614|consen 267 IVRTPLA-----------DRPPWPLIS---VKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLA 332 (420)
T ss_pred hhhchhh-----------hcCCcCeee---eccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhcc
Confidence 1111111 111122222 2233458999999999999999999999999999999999998762
Q ss_pred CCCcc--------hHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCc
Q 010225 434 GADIG--------EASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 473 (514)
Q Consensus 434 ~~~~~--------~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 473 (514)
++... .+.++..|..+|..+.-.+..-+.....+-+...+
T Consensus 333 ~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~rl~~~~~l~gi~~~s~~~ 380 (420)
T KOG2614|consen 333 GEEYSRENESHAIIELAMYSYKEERWRRLLRLKVDAYLVGILPQSFGP 380 (420)
T ss_pred ccceecccchhHHHHHHHHHHHHHHHHHHhhhhhhheeeEeccccccc
Confidence 11111 25688888888866655544444443433333333
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=3.9e-31 Score=269.91 Aligned_cols=320 Identities=21% Similarity=0.236 Sum_probs=215.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
|||+||||||+|+++|+.|++. |++|+|+|+.. .. ....+..+++ ..++.+++.+++...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~----G~~V~l~E~~~-~~----------~~~cg~~i~~---~~l~~l~i~~~~~~~-- 60 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA----GIETILLERAL-SN----------IKPCGGAIPP---CLIEEFDIPDSLIDR-- 60 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCC-CC----------cCcCcCCcCH---hhhhhcCCchHHHhh--
Confidence 7999999999999999999996 99999999982 21 1223455665 457788887776653
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
.+..+.++...+.. ...... ....+...++|..|+++|.+.+.+.| ++++.+ +|+++..
T Consensus 61 -~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~r~~fd~~L~~~a~~~G-~~v~~~-~v~~v~~--------------- 119 (388)
T TIGR02023 61 -RVTQMRMISPSRVP-IKVTIP--SEDGYVGMVRREVFDSYLRERAQKAG-AELIHG-LFLKLER--------------- 119 (388)
T ss_pred -hcceeEEEcCCCce-eeeccC--CCCCceEeeeHHHHHHHHHHHHHhCC-CEEEee-EEEEEEE---------------
Confidence 45566666544321 111111 01112236999999999999999887 899766 6999876
Q ss_pred ccccccCCeeEEEeCC------C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecC-----CCcceE
Q 010225 216 TTLFTKGHLAKLDLSD------G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYCAW 281 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~------g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 281 (514)
.++.+.|.+.+ | .+++||+ |+|||.+|.+|+.++..... .+ ..++...+.... +.....
T Consensus 120 -----~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~~ 192 (388)
T TIGR02023 120 -----DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNL-PR-VIAYQERIKLPDDKMAYYEELAD 192 (388)
T ss_pred -----cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCC-cE-EEEEEEEecCCchhcccCCCeEE
Confidence 33456666543 2 3699999 99999999999999765321 11 122323332211 111121
Q ss_pred EE----ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcc
Q 010225 282 QR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT 357 (514)
Q Consensus 282 ~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
.+ +.++++.|++|.++ ..++...... ...+.+.+.+.+.+.+. ....
T Consensus 193 ~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~------~~~~~~~~~~~l~~~~~--~~~~-------------------- 243 (388)
T TIGR02023 193 VYYGGEVSPDFYGWVFPKGD-HIAVGTGTGT------HGFDAKQLQANLRRRAG--LDGG-------------------- 243 (388)
T ss_pred EEECCCcCCCceEEEeeCCC-eeEEeEEECC------CCCCHHHHHHHHHHhhC--CCCc--------------------
Confidence 22 24678999999975 4555543221 11344556555555321 0000
Q ss_pred ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCc
Q 010225 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI 437 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~ 437 (514)
+ ... ....++.....++|..++++|+|||||.++|++|+|++.||.+|..++++|.++++.+
T Consensus 244 ----------~-~~~----~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~--- 305 (388)
T TIGR02023 244 ----------Q-TIR----REAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG--- 305 (388)
T ss_pred ----------e-Eee----eeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC---
Confidence 0 000 1112233344567788999999999999999999999999999999999999998754
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225 438 GEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD 471 (514)
Q Consensus 438 ~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~ 471 (514)
....|++|++.++......+...+.+..++...
T Consensus 306 -~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (388)
T TIGR02023 306 -DATDLRHYERKFMKLYGTTFRVLRVLQMVYYRS 338 (388)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 257899999999999988888888888888554
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=3.3e-30 Score=263.09 Aligned_cols=340 Identities=21% Similarity=0.188 Sum_probs=220.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
+||+||||||+|+++|+.|++. |++|+|+||..... ...+..++. ..|+++|+.+.+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~----G~~V~llE~~~~~~-----------~~cg~~i~~---~~l~~~g~~~~~~~~-- 60 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA----GIQTFLLERKPDNA-----------KPCGGAIPL---CMVDEFALPRDIIDR-- 60 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC----CCcEEEEecCCCCC-----------CCccccccH---hhHhhccCchhHHHh--
Confidence 5899999999999999999996 99999999976431 222444543 567888887766553
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
.+..+.++...+ ..+.+.... ....+.+.++|..|+++|.+++.+.| ++++.++ +++++. .++
T Consensus 61 -~i~~~~~~~p~~-~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G-~~v~~~~-~~~i~~---------~~~--- 123 (398)
T TIGR02028 61 -RVTKMKMISPSN-IAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAG-ATLINGL-VTKLSL---------PAD--- 123 (398)
T ss_pred -hhceeEEecCCc-eEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCC-cEEEcce-EEEEEe---------ccC---
Confidence 344555554332 222222111 11222346999999999999999987 9998884 777753 000
Q ss_pred ccccccCCeeEEEe--CC-----C--cEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC-----Ccce
Q 010225 216 TTLFTKGHLAKLDL--SD-----G--TSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCA 280 (514)
Q Consensus 216 ~~~~~~~~~~~v~~--~~-----g--~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 280 (514)
.++.+.|++ .+ | .+++||+ |+|||.+|.+|+.++.... .+ ...+...+..+.+ ....
T Consensus 124 -----~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR02028 124 -----ADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY--SY-AIAFQERIRLPDEKMAYYDDLA 195 (398)
T ss_pred -----CCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc--ce-EEEEEEEeeCChhhcccCCCeE
Confidence 123344432 22 3 3799999 9999999999999976421 11 1122222222211 1112
Q ss_pred EEE----ecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCc
Q 010225 281 WQR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA 356 (514)
Q Consensus 281 ~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (514)
..+ +.|++|.|+||.++ ..++....... ....+.+.+.+...+. . .+.+
T Consensus 196 ~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~--------------~~~~-- 248 (398)
T TIGR02028 196 EMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAA------KPEIKRLQSGIRARAA----G--------------KVAG-- 248 (398)
T ss_pred EEEeCCCCCCCceEEEEECCC-eEEEEEEeCCC------CccHHHHHHhhhhhhh----h--------------ccCC--
Confidence 222 24678999999985 44555532211 1123445544433111 0 0000
Q ss_pred cccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCC
Q 010225 357 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD 436 (514)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~ 436 (514)
..+.+ ....++.....+++..++++|||||||.++|++|+|++.||.+|..+|+++.++++.+.+
T Consensus 249 -----------~~~~~----~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~ 313 (398)
T TIGR02028 249 -----------GRIIR----VEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGA 313 (398)
T ss_pred -----------CcEEE----EEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00111 123344444456778899999999999999999999999999999999999999876643
Q ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHh
Q 010225 437 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA 486 (514)
Q Consensus 437 ~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 486 (514)
..++..|+.|++.++......+.....+.++|..++ ..++.++..+
T Consensus 314 ~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 359 (398)
T TIGR02028 314 VTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSN----AGREAFVEMC 359 (398)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHh
Confidence 335788999999999999999999999999987642 3444444444
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=99.98 E-value=3.8e-30 Score=258.87 Aligned_cols=306 Identities=19% Similarity=0.170 Sum_probs=185.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
+||+||||||+|+++|+.|++ . ++|+|+|+.+.....+ ....++..+++++.++|+++|++........
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~----~-~~V~liE~~~~~~~~~------~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~ 70 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG----K-MKVIAIDKKHQCGTEG------FSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN 70 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc----c-CCEEEEECCCcccccc------ccCcCcCccCHHHHHHHHHcCCCCCcceeec
Confidence 799999999999999999999 4 8999999998652111 2345678999999999999998632111000
Q ss_pred cCcceEEEEeCCCcceeeeccCC-CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
.....+. .+.+.... .......+.++|..|+++|.+.+ +.+ ++++++++|++++.
T Consensus 71 ~~~~~~~--------~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~-------------- 126 (351)
T PRK11445 71 PQIFAVK--------TIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWR-------------- 126 (351)
T ss_pred cccceee--------EecccccchhhcCCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEE--------------
Confidence 0000010 11111000 00111235699999999999865 445 99999999999976
Q ss_pred cccccccCCeeEEEe-CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCc---ceEEEecCC
Q 010225 215 ATTLFTKGHLAKLDL-SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY---CAWQRFLPA 287 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 287 (514)
.++.+.|.+ .+|. +++||+ |+|||.+|.+|++++.......+ .++...+....+.+ ..+..-..+
T Consensus 127 ------~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~ 198 (351)
T PRK11445 127 ------EDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY--VAIQQWFAEKHPVPFYSCIFDNEITD 198 (351)
T ss_pred ------cCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhE--EEEEEEecCCCCCCCcceEEeccCCC
Confidence 335566765 4664 699999 99999999999998754322222 22232333222211 112222246
Q ss_pred CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225 288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 367 (514)
Q Consensus 288 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
++.|.+|.++.. .++...+....... .+.+.+.+.. +...++.. +
T Consensus 199 ~~~W~~p~~~~~-~~g~~~~~~~~~~~----~~~l~~~l~~-~~~~~~~~-----------~------------------ 243 (351)
T PRK11445 199 CYSWSISKDGYF-IFGGAYPMKDGRER----FETLKEKLSA-FGFQFGKP-----------V------------------ 243 (351)
T ss_pred ceEEEeCCCCcE-EecccccccchHHH----HHHHHHHHHh-cccccccc-----------c------------------
Confidence 788999985533 33222221111000 0111222211 11001000 0
Q ss_pred Cceeeeccceeeeecccccccc--cccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHH
Q 010225 368 PRVVKLASERMVFPLSLKHANN--YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 445 (514)
Q Consensus 368 ~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~ 445 (514)
+. ...+++....... +.++||+|||||||.++|++|+|++.|++||..|++.|.+.. +..++.
T Consensus 244 ----~~---~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~ 308 (351)
T PRK11445 244 ----KT---EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--------EKLNTA 308 (351)
T ss_pred ----cc---ccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--------cchHHH
Confidence 00 0112221111222 235889999999999999999999999999999999998753 457889
Q ss_pred HHHHhhHHH
Q 010225 446 YEAERKPAN 454 (514)
Q Consensus 446 Y~~~r~~~~ 454 (514)
|++.++...
T Consensus 309 y~~~~~~~~ 317 (351)
T PRK11445 309 YWRKTRKLR 317 (351)
T ss_pred HHHHHHHHH
Confidence 999887755
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=8.7e-30 Score=250.52 Aligned_cols=285 Identities=19% Similarity=0.269 Sum_probs=188.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
|||+||||||+|+++|+.|++. |++|+||||+..++ ...++..+.+.+.+.+...+. .. .
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~----g~~v~vie~~~~~~----------~~~~~~~~~~~~~~~l~~~~~--~~----~ 60 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK----GLRVLLLEKKSFPR----------YKPCGGALSPRVLEELDLPLE--LI----V 60 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCCC----------cccccCccCHhHHHHhcCCch--hh----h
Confidence 6999999999999999999996 99999999998763 233467788887777665542 11 1
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
.......++...+.. ..... .....+.++|..+.+.|.+.+++.+ ++++++++|+++..
T Consensus 61 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~--------------- 119 (295)
T TIGR02032 61 NLVRGARFFSPNGDS-VEIPI----ETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEI--------------- 119 (295)
T ss_pred hheeeEEEEcCCCcE-EEecc----CCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEE---------------
Confidence 122333344333321 12111 1345678999999999999999887 99999999999976
Q ss_pred ccccccCCeeEEEeCC-CcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC--CcceEEEe-----cC
Q 010225 216 TTLFTKGHLAKLDLSD-GTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--NYCAWQRF-----LP 286 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~-g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~ 286 (514)
.++.+.+.+.+ +.+++||+ |+|||.+|.+|+.++......... ..+...++.+.. ....+..+ .+
T Consensus 120 -----~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (295)
T TIGR02032 120 -----HDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISP 193 (295)
T ss_pred -----eCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCC
Confidence 33455555554 35799999 999999999999987654322222 334444444321 12222222 14
Q ss_pred CCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225 287 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 366 (514)
Q Consensus 287 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
++++|++|.+++..++.+...... ...+.++..+.+...++ .+ +.
T Consensus 194 ~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~-~l---------------~~--------------- 238 (295)
T TIGR02032 194 GGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARRP-EL---------------KD--------------- 238 (295)
T ss_pred CceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhCc-cc---------------cc---------------
Confidence 589999999998888877665432 22334444444443222 00 00
Q ss_pred CCceeeeccceeeeecccc-cccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHH
Q 010225 367 PPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 427 (514)
Q Consensus 367 ~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l 427 (514)
.++.+ ...+++... ...++..+||+++|||||+++|++|||+|+||+||..+|++|
T Consensus 239 -~~~~~----~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 239 -AETVE----VIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred -CcEEe----eeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 00011 111222222 355678899999999999999999999999999999999875
No 51
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.97 E-value=3e-30 Score=243.79 Aligned_cols=397 Identities=16% Similarity=0.163 Sum_probs=289.2
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH
Q 010225 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY 129 (514)
Q Consensus 50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~ 129 (514)
.+.+..+||+|||||++|.++|+.|+|. |.+|+||||+-.- +..--|..++|.+...|.++|+.|.
T Consensus 40 ~~~~~~~DvIIVGAGV~GsaLa~~L~kd----GRrVhVIERDl~E----------PdRivGEllQPGG~~~L~~LGl~Dc 105 (509)
T KOG1298|consen 40 ARNDGAADVIIVGAGVAGSALAYALAKD----GRRVHVIERDLSE----------PDRIVGELLQPGGYLALSKLGLEDC 105 (509)
T ss_pred hccCCcccEEEECCcchHHHHHHHHhhC----CcEEEEEeccccc----------chHHHHHhcCcchhHHHHHhCHHHH
Confidence 3445678999999999999999999996 9999999998754 3344578999999999999999988
Q ss_pred HHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCccc
Q 010225 130 VQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
+.....+...++.++.......++|+..+.+..+.|..++...|.+-|++.+...+||++..+ .|.++..+
T Consensus 106 ve~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee-------- 176 (509)
T KOG1298|consen 106 VEGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEE-------- 176 (509)
T ss_pred hhcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhc--------
Confidence 888777778888888877778888888888888889999999999999999999999998888 57777641
Q ss_pred CCCCccccccccCCeeEEEe--CCCc--EEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEec-C-CCcceEE
Q 010225 210 DSTPSATTLFTKGHLAKLDL--SDGT--SLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-K-ENYCAWQ 282 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~--~~g~--~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 282 (514)
++....|++ +.|+ +..|-+ |.|||..|.+|+.+-.+.... ....++....+.. . .....+.
T Consensus 177 -----------~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~-V~S~fVG~vl~N~~l~~p~hghv 244 (509)
T KOG1298|consen 177 -----------EGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEE-VPSYFVGLVLKNCRLPAPNHGHV 244 (509)
T ss_pred -----------cCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccc-cchheeeeeecCCCCCCCCcceE
Confidence 222223444 3444 577889 999999999999994322211 1112222222221 1 1134555
Q ss_pred EecCCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccc
Q 010225 283 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE 362 (514)
Q Consensus 283 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (514)
.+.+.-++.++|++....++.+..+..+... ....+....+.+.....-.+. .-+.|+.+..
T Consensus 245 IL~~pspil~Y~ISStEvRcl~~v~g~~~Ps---i~~gem~~~mk~~v~PqiP~~----------lR~~F~~av~----- 306 (509)
T KOG1298|consen 245 ILSKPSPILVYQISSTEVRCLVDVPGQKLPS---IANGEMATYMKESVAPQIPEK----------LRESFLEAVD----- 306 (509)
T ss_pred EecCCCcEEEEEecchheEEEEecCcccCCc---ccchhHHHHHHHhhCcCCCHH----------HHHHHHHHhh-----
Confidence 5668889999999999999998887755322 222333344443222000000 0011110000
Q ss_pred cccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHH
Q 010225 363 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL 442 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~ 442 (514)
.......|-...++......+++|+|||..+-||.+|.||.-++.|...|-+.|.....-.+...-.+.
T Consensus 307 -----------~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~ 375 (509)
T KOG1298|consen 307 -----------EGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDY 375 (509)
T ss_pred -----------ccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHH
Confidence 001112333333444555678999999999999999999999999999999999874321111112578
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcC-CCchHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225 443 LKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 510 (514)
Q Consensus 443 l~~Y~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 510 (514)
++.|...|++....+..++..++.+|.. ++.....+|+..|..+..-....+..+..++|..+.|+-+
T Consensus 376 i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~L 444 (509)
T KOG1298|consen 376 IKSFYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSL 444 (509)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHH
Confidence 8999999999999999999999999988 7788889999999999988899999999999999998754
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.97 E-value=8.5e-29 Score=252.88 Aligned_cols=333 Identities=18% Similarity=0.169 Sum_probs=217.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
++|||+||||||||+++|+.|++. |++|+|+||+..++.+.| .+..+.+..++.+......+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~----G~~VlvlEk~~~~G~k~~---------~~~~~~~~~l~~l~~~~~~~-i--- 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA----GLDVLVLEKGSEPGAKPC---------CGGGLSPRALEELIPDFDEE-I--- 64 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc----CCeEEEEecCCCCCCCcc---------ccceechhhHHHhCCCcchh-h---
Confidence 579999999999999999999997 899999999999865443 14667777665543222111 1
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
...+....++.......+..+ ...+|.++|..|+++|.+++++.| ++++.+++++++..
T Consensus 65 -~~~v~~~~~~~~~~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~------------- 123 (396)
T COG0644 65 -ERKVTGARIYFPGEKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIR------------- 123 (396)
T ss_pred -heeeeeeEEEecCCceEEecC------CCceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEE-------------
Confidence 123444444444222222211 155899999999999999999998 99999999999987
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCCcceEE-----EecCC
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ-----RFLPA 287 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 287 (514)
++++.+.....++.+++|++ |+|||.+|.+++.++...........++.-....+.+...... ...+.
T Consensus 124 ------~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 197 (396)
T COG0644 124 ------EDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPG 197 (396)
T ss_pred ------eCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCC
Confidence 12234444444557899999 9999999999999988711111112233333333322211111 13467
Q ss_pred CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCC
Q 010225 288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP 367 (514)
Q Consensus 288 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (514)
|+.|+||.+++..++........ .. ..... +..+.+.+... ...+..+.
T Consensus 198 Gy~wifP~~~~~~~VG~g~~~~~-~~-~~~~~-~~l~~f~~~~~----------------~~~~~~~~------------ 246 (396)
T COG0644 198 GYGWIFPLGDGHANVGIGVLLDD-PS-LSPFL-ELLERFKEHPA----------------IRKLLLGG------------ 246 (396)
T ss_pred ceEEEEECCCceEEEEEEEecCC-cC-CCchH-HHHHHHHhCcc----------------cchhccCC------------
Confidence 99999999999999988766554 11 11111 33333322110 00010000
Q ss_pred CceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHH
Q 010225 368 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 447 (514)
Q Consensus 368 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~ 447 (514)
++.+.. ....|........+..+++++|||||..++|++|.|+..||.+|..+|+.|.++...+ ...|+.|+
T Consensus 247 -~~~~~~--~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~ 318 (396)
T COG0644 247 -KILEYA--AGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYE 318 (396)
T ss_pred -ceEEEe--eeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHH
Confidence 011111 1123333333332677899999999999999999999999999999999999987643 56888899
Q ss_pred HHhhHHHHHHHHHHHHHHHhhc
Q 010225 448 AERKPANIVMMAVLDGFQKAYS 469 (514)
Q Consensus 448 ~~r~~~~~~~~~~~~~~~~~~~ 469 (514)
+.++..............+.+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~ 340 (396)
T COG0644 319 RLLRKSLAREDLKSLRLLKLLL 340 (396)
T ss_pred HHHHHHHHHHHHHHhhhhhhHH
Confidence 9988777666665555555544
No 53
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=3.6e-29 Score=274.10 Aligned_cols=328 Identities=17% Similarity=0.162 Sum_probs=211.0
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcC--CcHHHHhh
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG--AWQYVQQH 133 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg--l~~~~~~~ 133 (514)
++|+||||||+||++|+.|++.+ .|++|+|+||++.. ...+.+..+++++++.|+.++ +.+.+...
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~--~G~~V~vlEr~~~~----------~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~ 68 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLD--PAHEVTVVERNRPY----------DTFGWGVVFSDATLGNLRAADPVSAAAIGDA 68 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhC--CCCeEEEEecCCCC----------cccCcceEccHHHHHHHHhcCHHHHHHHHHh
Confidence 37999999999999999999952 27999999999865 344568899999999988776 22222221
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
......+.+... +. ... . .......++|.+|.+.|.+.+.+.| ++|+++++|+++..
T Consensus 69 -~~~~~~~~~~~~-g~-~~~-~-----~g~~~~~i~R~~L~~~L~e~a~~~G-V~i~~g~~v~~i~~------------- 125 (765)
T PRK08255 69 -FNHWDDIDVHFK-GR-RIR-S-----GGHGFAGIGRKRLLNILQARCEELG-VKLVFETEVPDDQA------------- 125 (765)
T ss_pred -cccCCceEEEEC-CE-EEE-E-----CCeeEecCCHHHHHHHHHHHHHHcC-CEEEeCCccCchhh-------------
Confidence 112333333322 11 110 0 1111245899999999999999987 99999998877632
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCC---CCCceEEEEEEEecCCCcceEEEecCCCc
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGW---SYSQNAIICTVEHNKENYCAWQRFLPAGP 289 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 289 (514)
. ..+||+ |+|||.+|.+|+++....... .+....+.+.... .+.........+.++
T Consensus 126 ---------~----------~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~~~g~ 185 (765)
T PRK08255 126 ---------L----------AADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEETEHGW 185 (765)
T ss_pred ---------h----------hcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEecCCce
Confidence 0 147999 999999999999874322211 1111111111110 011011111123343
Q ss_pred e--EEeecCCCceEEEEEcCccchHH--hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCcccccccccc
Q 010225 290 I--ALLPIGDNFSNIVWTMNPKDASD--CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 365 (514)
Q Consensus 290 ~--~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
+ ..+|..++...+++..+.+.... ....+.+...+.+.+.|. +|.+... .+..
T Consensus 186 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~~~~~~--------li~~-------------- 242 (765)
T PRK08255 186 FQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFA-DYLDGHP--------LMSN-------------- 242 (765)
T ss_pred EEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhH-HhcCCCc--------cccc--------------
Confidence 2 34777776665555554332211 223466778888888776 4433211 0000
Q ss_pred CCCceeeeccceeeeecccccccccccCc----EEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHH
Q 010225 366 VPPRVVKLASERMVFPLSLKHANNYVSKR----VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 441 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~ 441 (514)
.... .....+++....+++|..++ |+|+|||||+++|+.|||+|+||+||..|+++|.... .+ ...
T Consensus 243 ----~~~~-~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~---~~--~~~ 312 (765)
T PRK08255 243 ----ASHL-RGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP---GD--LPA 312 (765)
T ss_pred ----cccc-ccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc---cc--HHH
Confidence 0000 00001122223467899888 9999999999999999999999999999999998752 13 378
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010225 442 LLKKYEAERKPANIVMMAVLDGFQKAYSVD 471 (514)
Q Consensus 442 ~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~ 471 (514)
+|+.|++.|+++++.++..++....+|...
T Consensus 313 al~~ye~~R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 313 ALAAYEEERRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence 999999999999999999999988888664
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=5.8e-28 Score=248.40 Aligned_cols=375 Identities=15% Similarity=0.143 Sum_probs=216.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH-HHh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY-VQQ 132 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~-~~~ 132 (514)
.+|||+||||||+|+++|+.|++. |++|+||||.+.++.+.+ .+..+...+.+.+.. ++... ..+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~----G~~VlliEr~~~~g~k~~---------~gg~i~~~~~~~l~~-~~~~~~~i~ 69 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA----GLDVLVIERGDSAGCKNM---------TGGRLYAHTLEAIIP-GFAASAPVE 69 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCCCcccc---------cCceeecccHHHHcc-cccccCCcc
Confidence 469999999999999999999996 999999999987753321 123333333332210 22110 011
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCC-cccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNK-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
... ....+.+.+.+....+.+....... ...+|.+.|..|+++|.+.+++.| ++++++++|+++..
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~----------- 136 (429)
T PRK10015 70 RKV-TREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVR----------- 136 (429)
T ss_pred ccc-cceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEE-----------
Confidence 101 1122334343333333333222111 224789999999999999999887 99999999999876
Q ss_pred CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCC-ceEEEEEEEecCC-----------Cc
Q 010225 212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKE-----------NY 278 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~-----------~~ 278 (514)
+++.+.....++.++.||+ |+|||.+|.+++.++......... ...+...+..+.. ..
T Consensus 137 ---------~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g 207 (429)
T PRK10015 137 ---------EGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEG 207 (429)
T ss_pred ---------eCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCC
Confidence 2234432233455799999 999999999999987643322111 1222222332211 11
Q ss_pred ceEEEec--CCC---ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccc
Q 010225 279 CAWQRFL--PAG---PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 353 (514)
Q Consensus 279 ~~~~~~~--~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (514)
..|..+. ..+ ..|+++. .+..++.+.+...... ....++.++++.+.+. | .+..++
T Consensus 208 ~~w~~~g~~~~g~~g~G~~~~~-~d~v~vGv~~~~~~~~-~~~~~~~~~l~~~~~~------p-----------~~~~~~ 268 (429)
T PRK10015 208 AAWLFAGSPSDGLMGGGFLYTN-KDSISLGLVCGLGDIA-HAQKSVPQMLEDFKQH------P-----------AIRPLI 268 (429)
T ss_pred eEEEecCccCCCCCCceEEEEc-CCcEEEEEEEehhhhc-cCCCCHHHHHHHHhhC------h-----------HHHHHh
Confidence 2222221 111 3444443 3455555433221111 1234556666665431 0 111110
Q ss_pred -cCccccccccccCCCceeeeccceeeeecccc-cccccccCcEEEEcccccccC--CcccccchhhhHHHHHHHHHHHH
Q 010225 354 -GDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVH--PLAGQGVNLGFGDASTLSRIIAE 429 (514)
Q Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~LvGDAAh~~~--P~~GqG~~~al~da~~La~~l~~ 429 (514)
+.. +.+. .....|.... ..++...+++++|||||+.++ |++|+|++.||.++..+|+++.+
T Consensus 269 ~~~~-------------~~e~--~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~ 333 (429)
T PRK10015 269 SGGK-------------LLEY--SAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIA 333 (429)
T ss_pred cCCE-------------EEEE--eeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHH
Confidence 000 0000 0111232211 235677899999999999998 56999999999999999999999
Q ss_pred hhhcCCCcchHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcCCCchH---HHHHHHHHHH--hcc--ChhHHHHHHHHh
Q 010225 430 GIAVGADIGEASLLKKYEAERKPA-NIVMMAVLDGFQKAYSVDFGPL---NILRAAAFHG--AQY--ISPLKRNIISYA 500 (514)
Q Consensus 430 ~~~~~~~~~~~~~l~~Y~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~l~~--~~~--~~~~~~~~~~~~ 500 (514)
+++.+ |. +...|+.|++.++.. ..+-+...+.+..++..+..+. ..+.+.+-.+ ++. .+.+.+.+++.+
T Consensus 334 a~~~~-d~-s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (429)
T PRK10015 334 AKERA-DF-SASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNDMFTIDGKPNQPVRKMIMGHA 410 (429)
T ss_pred HHhcC-CC-ccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCccHHHHHHHHHHHHHHHhcccCCccchHHHHHHHHHH
Confidence 98865 33 467789999998877 4444667777777776652221 2222222222 222 246667777666
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=2.6e-26 Score=236.51 Aligned_cols=341 Identities=17% Similarity=0.164 Sum_probs=202.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.+|||+||||||+|+++|+.|++. |++|+||||.+.++.+.+ .+..+...+.+ .+ +.++...
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~----G~~V~llEr~~~~g~k~~---------~gg~l~~~~~e---~l--~~~~~~~ 65 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE----GAQVLVIERGNSAGAKNV---------TGGRLYAHSLE---HI--IPGFADS 65 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC----CCeEEEEEcCCCCCCccc---------ccceechhhHH---HH--hhhhhhc
Confidence 469999999999999999999996 999999999987753321 12233333322 21 1122111
Q ss_pred ----hccCcceEEEEeCCCcceeeeccCC-CCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225 134 ----RHAYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (514)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~ 208 (514)
.......+.+....+.....+.... ......+|.+.|..|+++|.+.+++.| ++++++++|++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~-------- 136 (428)
T PRK10157 66 APVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQ-------- 136 (428)
T ss_pred CcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE--------
Confidence 0001122333333332222322111 122334688999999999999999887 99999999999976
Q ss_pred cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEE--EEEecC----------
Q 010225 209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIIC--TVEHNK---------- 275 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~--~~~~~~---------- 275 (514)
+++.+.+...+|.++.||+ |+|||.+|.+++.++...... ....++.. .+..+.
T Consensus 137 ------------~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~~-~~~~av~~~~~~~~~~~~~~~~~~~~ 203 (428)
T PRK10157 137 ------------RDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVK-PTDVAVGVKELIELPKSVIEDRFQLQ 203 (428)
T ss_pred ------------eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCCC-CcEEEEEEEEEEEcCHHHHHHhhccC
Confidence 2244433345677899999 999999999999987653222 22223322 222211
Q ss_pred -CCcceEEEec-C-C---CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccc
Q 010225 276 -ENYCAWQRFL-P-A---GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF 349 (514)
Q Consensus 276 -~~~~~~~~~~-~-~---g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (514)
+....+.... + . |..|+++. .+..++.+.+..+... ....++.++++.+.+. +. ....+
T Consensus 204 ~~~g~~~~~~g~~~~g~~ggG~~~~~-~~~~svG~~~~~~~~~-~~~~~~~~~l~~~~~~------p~-------v~~~~ 268 (428)
T PRK10157 204 GNQGAACLFAGSPTDGLMGGGFLYTN-ENTLSLGLVCGLHHLH-DAKKSVPQMLEDFKQH------PA-------VAPLI 268 (428)
T ss_pred CCCCeEEEEEECCCCCCcCceeEEEc-CCeEEEEEEEehHHhc-ccCCCHHHHHHHHHhC------ch-------HHHHh
Confidence 0112222221 1 1 13355543 4455565544332211 1224556666655431 00 00011
Q ss_pred cccccCccccccccccCCCceeeecc-ceeeeeccc-ccccccccCcEEEEcccccccCC--cccccchhhhHHHHHHHH
Q 010225 350 SWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHP--LAGQGVNLGFGDASTLSR 425 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~-~~~~~~~~~~v~LvGDAAh~~~P--~~GqG~~~al~da~~La~ 425 (514)
.+ . +... .....|... ...++...++++++||||+.++| ++|+|++.|+.++..+|+
T Consensus 269 ~~---~----------------~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAe 329 (428)
T PRK10157 269 AG---G----------------KLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAK 329 (428)
T ss_pred CC---C----------------eEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHH
Confidence 11 0 0000 000122111 12345667899999999999998 699999999999999999
Q ss_pred HHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010225 426 IIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 470 (514)
Q Consensus 426 ~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~ 470 (514)
++.++++.+ +. +...|+.|++..+...-+-+...+.+..++..
T Consensus 330 ai~~a~~~~-~~-s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~ 372 (428)
T PRK10157 330 TVLSAMKSD-DF-SKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN 372 (428)
T ss_pred HHHHHHhcC-Cc-chhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence 999998865 33 46789999998777654555555555555554
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.95 E-value=7.7e-25 Score=223.99 Aligned_cols=302 Identities=19% Similarity=0.207 Sum_probs=186.7
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhcc
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (514)
||+||||||+|+++|+.|++. |++|+|||+.+... .+....++... ++++++. .+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~----g~~v~liE~~~~~~-----------~~~~~~~~~~~---~~~~~~~-~~~~~--- 58 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP----GLRVQLIEPHPPIP-----------GNHTYGVWDDD---LSDLGLA-DCVEH--- 58 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCCC-----------CCccccccHhh---hhhhchh-hHHhh---
Confidence 799999999999999999996 99999999987542 11123333332 3344432 22221
Q ss_pred Ccce-EEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 137 YFDK-MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 137 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
.... ..+...... . ........+++..|.+.|.+.+.+.+ ++++ ..+|++++.
T Consensus 59 ~~~~~~~~~~~~~~--~-------~~~~~~~~i~~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~--------------- 112 (388)
T TIGR01790 59 VWPDVYEYRFPKQP--R-------KLGTAYGSVDSTRLHEELLQKCPEGG-VLWL-ERKAIHAEA--------------- 112 (388)
T ss_pred cCCCceEEecCCcc--h-------hcCCceeEEcHHHHHHHHHHHHHhcC-cEEE-ccEEEEEEe---------------
Confidence 1222 111111110 0 01122346999999999999998886 8886 558888875
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC----CcceEEEec--C--
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----NYCAWQRFL--P-- 286 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~-- 286 (514)
+.++.+.|.+.+|.+++|++ |+|||.+|.+++.......+. +......+....+ ....+..+. .
T Consensus 113 ----~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~---q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~ 185 (388)
T TIGR01790 113 ----DGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGF---QVAYGVEARLSRPPHGPSSMVIMDARVDQLA 185 (388)
T ss_pred ----cCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceE---EEEEEEEEEEcCCCCCCCceEEEeccccccc
Confidence 12356778888888899999 999999997754331111111 1222223333211 111222221 1
Q ss_pred ------CC--ceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccccccccCcc
Q 010225 287 ------AG--PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDAT 357 (514)
Q Consensus 287 ------~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
.+ ++|++|.+++...+....... ....+.+.+.+.+.+.+. .+|..
T Consensus 186 ~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~--------------------- 240 (388)
T TIGR01790 186 APELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDRLRQRILARLNAQGWQI--------------------- 240 (388)
T ss_pred cccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHHHHHHHHHHHHHcCCee---------------------
Confidence 12 789999988876554322111 122455666666665443 01100
Q ss_pred ccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCc
Q 010225 358 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI 437 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~ 437 (514)
..+. ..+...+|+..... +..+|+++||||||.++|.+|+|++.|+.+|..||+.|.++++.+
T Consensus 241 ----------~~i~--~~~~~~iP~~~~~~--~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~--- 303 (388)
T TIGR01790 241 ----------KTIE--EEEWGALPVGLPGP--FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS--- 303 (388)
T ss_pred ----------eEEE--eeeeEEEecccCCC--ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC---
Confidence 0011 11233467654332 367899999999999999999999999999999999999988644
Q ss_pred chHHHHHHHHHHhhHHHHH
Q 010225 438 GEASLLKKYEAERKPANIV 456 (514)
Q Consensus 438 ~~~~~l~~Y~~~r~~~~~~ 456 (514)
.+.+++.|+..++++..+
T Consensus 304 -~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 304 -SELATAAWDGLWPTERRR 321 (388)
T ss_pred -HHHHHHHHHHhchHHHHH
Confidence 378999998877776665
No 57
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.94 E-value=2.9e-25 Score=229.04 Aligned_cols=336 Identities=17% Similarity=0.235 Sum_probs=209.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH--HHhhh
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--VQQHR 134 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~ 134 (514)
||+|||||+||.++|..|++... ..++|+|||+...+ ..+-|....|....+++.+|+.+. +.+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~-~~~~v~lie~~~~~-----------~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~ 68 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP-DALSVTLIESPDIP-----------RIGVGESTLPSLRPFLRRLGIDEADFMRACD 68 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT-CSSEEEEEE-SSS--------------SSEEE--THHHHCHHHHT--HHHHCHHCT
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-CCcEEEEEecCCCC-----------CCCccccchHHHHHHHHHcCCChHHHHHHhC
Confidence 79999999999999999999721 11899999999876 345578888999999999999877 55544
Q ss_pred ccCcceEEEEe--CCCcc-eeeecc---------------------------------------------CC-CCCcccE
Q 010225 135 HAYFDKMQVWD--YTGLG-YTKYNA---------------------------------------------RD-VNKEILG 165 (514)
Q Consensus 135 ~~~~~~~~~~~--~~~~~-~~~~~~---------------------------------------------~~-~~~~~~~ 165 (514)
...-.+..+.+ ..+.. ..+|.. .. .....++
T Consensus 69 ~~~k~g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 148 (454)
T PF04820_consen 69 ATFKLGIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYA 148 (454)
T ss_dssp -EEESEEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-E
T ss_pred CeEeccEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCee
Confidence 32333444422 11110 011100 00 1224567
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
|+++|..|+++|++.+.+.| |+++.+ +|+++... +++....|+.++|.+++||+ |+|+|
T Consensus 149 yhlDR~~fd~~L~~~A~~~G-v~~~~g-~V~~v~~~------------------~~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 149 YHLDRAKFDQFLRRHAEERG-VEVIEG-TVVDVELD------------------EDGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp EEEEHHHHHHHHHHHHHHTT--EEEET--EEEEEE-------------------TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred EEEeHHHHHHHHHHHHhcCC-CEEEeC-EEEEEEEc------------------CCCCEEEEEECCCCEEEEeEEEECCC
Confidence 99999999999999999998 999988 58888761 12244578999999999999 99999
Q ss_pred CCchhhhh-hCCCccCCCC---CceEEEEEEEecC-CCcceEEEecCCCceEEeecCCCceEEEEEcCccchHHhhCCCH
Q 010225 245 GKSRVREL-AGFKTTGWSY---SQNAIICTVEHNK-ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE 319 (514)
Q Consensus 245 ~~S~vR~~-l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (514)
..|.+.++ ++........ ...++...++... ..........+.||+|.+|+.++..+ ++....... ++
T Consensus 209 ~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~ 281 (454)
T PF04820_consen 209 RRSLLARKALKVGFRDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SD 281 (454)
T ss_dssp GG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HH
T ss_pred ccchhhHhhhcCCCccccccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CH
Confidence 99998777 4333332221 2234444454443 22343455668999999999998776 444433322 33
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEc
Q 010225 320 DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG 399 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvG 399 (514)
+.....+.+.+...- . ..| ...++......++..+|+++||
T Consensus 282 ~~A~~~l~~~l~~~~----------------~-------------~~~----------~~i~~~~g~~~~~~~~n~vavG 322 (454)
T PF04820_consen 282 DEAEAELLAYLGGSP----------------E-------------AEP----------RHIRFRSGRRKQFWGKNCVAVG 322 (454)
T ss_dssp HHHHHHHHHHHTCHC----------------T-------------TSC----------EEEE-S-EEESSSEETTEEE-C
T ss_pred HHHHHHHHHhcchhh----------------h-------------cch----------hhhcccccchhhcccCCEEEEc
Confidence 344444444332000 0 000 1122333335667788999999
Q ss_pred ccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC-CchHH
Q 010225 400 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD-FGPLN 476 (514)
Q Consensus 400 DAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~ 476 (514)
|||+.++|+.++|+.+++..+..|++.|... +. .+.+++.|++......+.+.......+.+-... +++.+
T Consensus 323 dAAgFiDPL~StGI~la~~aa~~l~~~l~~~-----~~-~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~ 394 (454)
T PF04820_consen 323 DAAGFIDPLESTGIHLALSAAEALAEALPDD-----DF-SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWR 394 (454)
T ss_dssp CCTEE--GGGSHHHHHHHHHHHHHHHTHHCT-----TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHH
T ss_pred chhhccCccccccHHHHHHHHHHHHHhcccC-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHH
Confidence 9999999999999999999777777777653 22 277999999999999999999888888764443 34433
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.92 E-value=1e-22 Score=211.71 Aligned_cols=311 Identities=19% Similarity=0.218 Sum_probs=195.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...+||+||||||+|+++|+.|++. |++|+|||+.... ...++++. ..++.+|+.+.+..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~----Gl~V~LIe~~~p~-------------~~n~GvW~---~~l~~lgl~~~i~~ 165 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPF-------------TNNYGVWE---DEFKDLGLEDCIEH 165 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC----CCcEEEecCcccC-------------CCccccch---hHHHhcCcHHHHHh
Confidence 3458999999999999999999996 9999999986422 11133443 34677787544332
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
......++..++. .... ...+ ..++|..|.+.|.+.+.+.| +++ .+++|++++.
T Consensus 166 ----~w~~~~v~~~~~~-~~~~------~~~Y-g~V~R~~L~~~Ll~~a~~~G-V~~-~~~~V~~I~~------------ 219 (529)
T PLN02697 166 ----VWRDTIVYLDDDK-PIMI------GRAY-GRVSRTLLHEELLRRCVESG-VSY-LSSKVDRITE------------ 219 (529)
T ss_pred ----hcCCcEEEecCCc-eeec------cCcc-cEEcHHHHHHHHHHHHHhcC-CEE-EeeEEEEEEE------------
Confidence 1222223222211 1111 1111 25899999999999998877 887 6779999876
Q ss_pred CccccccccCCeeE-EEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCC-CCceEEEEEEEecCC-C---cceEEEec
Q 010225 213 PSATTLFTKGHLAK-LDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWS-YSQNAIICTVEHNKE-N---YCAWQRFL 285 (514)
Q Consensus 213 ~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~-~~~~~~~~~~~~~~~-~---~~~~~~~~ 285 (514)
.++.+. +.+.+|.++.|++ |+|||.+|. +.++....... ..+.++...+++..+ . ...++.|.
T Consensus 220 --------~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r 289 (529)
T PLN02697 220 --------ASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYR 289 (529)
T ss_pred --------cCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccc
Confidence 223333 4567788899999 999999993 23322211121 233444444444421 1 12222111
Q ss_pred -------------CCCceEEeecCCCceEEEEE-c-CccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccc
Q 010225 286 -------------PAGPIALLPIGDNFSNIVWT-M-NPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMF 349 (514)
Q Consensus 286 -------------~~g~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 349 (514)
..+++|++|.+++..++--+ . ... ..+.+.+.+.+.+.+. .++.
T Consensus 290 ~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~------~l~~~~l~~~L~~~l~~~Gi~-------------- 349 (529)
T PLN02697 290 DYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKD------AMPFDLLKKRLMSRLETMGIR-------------- 349 (529)
T ss_pred cccccccccccCCCceEEEEeecCCCeEEEEEeeeccCC------CCCHHHHHHHHHHHHHhCCCC--------------
Confidence 12578999999988877322 2 211 1344566666655443 0110
Q ss_pred cccccCccccccccccCCCceeeec-cceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHH
Q 010225 350 SWFRGDATLSAKECFEVPPRVVKLA-SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIA 428 (514)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~ 428 (514)
..++. .+....|+.. +.+.. ..+++++||||+.++|.+|.|+..++.+|..+|++|.
T Consensus 350 --------------------~~~i~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia 407 (529)
T PLN02697 350 --------------------ILKTYEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIA 407 (529)
T ss_pred --------------------cceEEEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHH
Confidence 01111 2233366643 33333 5789999999999999999999999999999999999
Q ss_pred HhhhcCCC-------cchHHHHHHHHHHhhHHHHHHHHHH
Q 010225 429 EGIAVGAD-------IGEASLLKKYEAERKPANIVMMAVL 461 (514)
Q Consensus 429 ~~~~~~~~-------~~~~~~l~~Y~~~r~~~~~~~~~~~ 461 (514)
++++.+.+ -.+...++.|++.|.....+.....
T Consensus 408 ~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~ 447 (529)
T PLN02697 408 RILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFF 447 (529)
T ss_pred HHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHH
Confidence 99986631 1347889999998877665544433
No 59
>PLN02463 lycopene beta cyclase
Probab=99.91 E-value=8.2e-22 Score=202.18 Aligned_cols=309 Identities=20% Similarity=0.176 Sum_probs=188.1
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (514)
....+||+||||||+|+++|+.|++. |++|+|||+.+... .+..++++ .+.++.+|+.+.+.
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~----Gl~V~liE~~~~~~-----------~p~~~g~w---~~~l~~lgl~~~l~ 86 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEA----GLSVCCIDPSPLSI-----------WPNNYGVW---VDEFEALGLLDCLD 86 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHC----CCeEEEeccCccch-----------hccccchH---HHHHHHCCcHHHHH
Confidence 34568999999999999999999996 99999999976431 11122332 34577788866554
Q ss_pred hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
.. .....++..+... .. ...+ ...++|..|.+.|.+++.+.| ++++ ..+|++++.
T Consensus 87 ~~----w~~~~v~~~~~~~-~~------~~~~-y~~V~R~~L~~~Ll~~~~~~G-V~~~-~~~V~~I~~----------- 141 (447)
T PLN02463 87 TT----WPGAVVYIDDGKK-KD------LDRP-YGRVNRKKLKSKMLERCIANG-VQFH-QAKVKKVVH----------- 141 (447)
T ss_pred hh----CCCcEEEEeCCCC-cc------ccCc-ceeEEHHHHHHHHHHHHhhcC-CEEE-eeEEEEEEE-----------
Confidence 31 1111222111110 00 1112 235899999999999998876 8886 468999986
Q ss_pred CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC----cceEEEe--
Q 010225 212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN----YCAWQRF-- 284 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-- 284 (514)
.++.+.|.+++|.++.||+ |+|||.+|++++.-. ......+.++...++...+. ...++.+
T Consensus 142 ---------~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~ 209 (447)
T PLN02463 142 ---------EESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRD 209 (447)
T ss_pred ---------cCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCCCcccccchhhhcCh
Confidence 3456788889998999999 999999999864311 11111122333333332111 1111110
Q ss_pred ---c-----------CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccccc
Q 010225 285 ---L-----------PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 350 (514)
Q Consensus 285 ---~-----------~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (514)
. -.+++|++|.+++...+-.+.-.. ....+.+.+.+.+.+.+. .++-.
T Consensus 210 ~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s----~~~~~~~~lk~~L~~~l~-~~Gi~------------- 271 (447)
T PLN02463 210 SHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVA----RPGLPMDDIQERMVARLR-HLGIK------------- 271 (447)
T ss_pred hhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeec----CCCCCHHHHHHHHHHHHH-HCCCC-------------
Confidence 0 035789999999886554331000 011234555555555332 11100
Q ss_pred ccccCccccccccccCCCceeeecc-ceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHH
Q 010225 351 WFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 429 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~ 429 (514)
..++.. +....|+... .+ ...++++++||||+.++|.+|.|+..++..|..+|++|.+
T Consensus 272 -------------------~~~i~~~E~~~IPmg~~-~~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~ 330 (447)
T PLN02463 272 -------------------VKSVEEDEKCVIPMGGP-LP-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVE 330 (447)
T ss_pred -------------------cceeeeeeeeEeeCCCC-CC-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHH
Confidence 011111 2223555332 22 2356899999999999999999999999999999999999
Q ss_pred hhhcCCC--cc----hH---HHHHHHHHHhhHHH
Q 010225 430 GIAVGAD--IG----EA---SLLKKYEAERKPAN 454 (514)
Q Consensus 430 ~~~~~~~--~~----~~---~~l~~Y~~~r~~~~ 454 (514)
+++.+.. .. +. +.|+.|++.|+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~ 364 (447)
T PLN02463 331 YLGSSRSNSFRGDELSAEVWNDLWPIERRRQREF 364 (447)
T ss_pred HHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHH
Confidence 9986543 11 12 45566666665443
No 60
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.87 E-value=3.8e-20 Score=186.70 Aligned_cols=304 Identities=15% Similarity=0.134 Sum_probs=171.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhcc
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA 136 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~ 136 (514)
||+|||||++|+++|+.|++. ..|++|+|+|+.+.... .+...++.....-... ..++.+.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~--~~g~~V~lle~~~~~~~-----------~~tw~~~~~~~~~~~~-~~~~~~v~---~ 63 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA--RPDFRIRVIEAGRTIGG-----------NHTWSFFDSDLSDAQH-AWLADLVQ---T 63 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc--CCCCeEEEEeCCCCCCC-----------cccceecccccchhhh-hhhhhhhe---E
Confidence 899999999999999999983 13899999999874420 0111121111100000 00111111 1
Q ss_pred CcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccc
Q 010225 137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216 (514)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~ 216 (514)
......+...... .. ....-..+++.+|.+.|.+.+.. .++++.+|++++.
T Consensus 64 ~W~~~~v~~~~~~--~~-------l~~~Y~~I~r~~f~~~l~~~l~~----~i~~~~~V~~v~~---------------- 114 (370)
T TIGR01789 64 DWPGYEVRFPKYR--RK-------LKTAYRSMTSTRFHEGLLQAFPE----GVILGRKAVGLDA---------------- 114 (370)
T ss_pred eCCCCEEECcchh--hh-------cCCCceEEEHHHHHHHHHHhhcc----cEEecCEEEEEeC----------------
Confidence 2223333322111 11 11223679999999999877742 3677889998843
Q ss_pred cccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCCC---cceEEEec---CC--
Q 010225 217 TLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFL---PA-- 287 (514)
Q Consensus 217 ~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~-- 287 (514)
+.+++ .+|.++.||+ |+|+|.+|.-.... .-+.++...++...++ ....+.+. .+
T Consensus 115 ------~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~--------~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~ 178 (370)
T TIGR01789 115 ------DGVDL--APGTRINARSVIDCRGFKPSAHLKG--------GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGY 178 (370)
T ss_pred ------CEEEE--CCCCEEEeeEEEECCCCCCCccccc--------eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCc
Confidence 34444 6888999999 99999997521111 1133333334443333 12222222 22
Q ss_pred CceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhc-CCCCCCCCCCCCCccccccccccCccccccccccC
Q 010225 288 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 366 (514)
Q Consensus 288 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
.+++++|.+++...+-.+.-.+ ....+.+.+...+..... .+|...
T Consensus 179 ~F~Y~lP~~~~~~lvE~T~~s~----~~~l~~~~l~~~l~~~~~~~g~~~~----------------------------- 225 (370)
T TIGR01789 179 RFVYVLPLGSHDLLIEDTYYAD----DPLLDRNALSQRIDQYARANGWQNG----------------------------- 225 (370)
T ss_pred eEEEECcCCCCeEEEEEEeccC----CCCCCHHHHHHHHHHHHHHhCCCce-----------------------------
Confidence 3566788888877664332221 122455666566555332 011100
Q ss_pred CCceeeeccceeeeecccc-c-ccccc-cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHH
Q 010225 367 PPRVVKLASERMVFPLSLK-H-ANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL 443 (514)
Q Consensus 367 ~~~~~~~~~~~~~~p~~~~-~-~~~~~-~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l 443 (514)
.+.+. +...+|+... . ...|. .++|+++|||||.++|.+|||++.+++||..|++.+.. .+.+. ..++
T Consensus 226 --~i~~~--e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~---~~~~~--~~~~ 296 (370)
T TIGR01789 226 --TPVRH--EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDL---SSEQL--AAFI 296 (370)
T ss_pred --EEEEe--eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCc---Cccch--hhhh
Confidence 01111 2235776442 1 11122 46699999999999999999999999999999998851 11122 3467
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 010225 444 KKYEAERKPANIVMMAVLDGF 464 (514)
Q Consensus 444 ~~Y~~~r~~~~~~~~~~~~~~ 464 (514)
..|...|..+.....-..+.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l 317 (370)
T TIGR01789 297 DSRARRHWSKTGYYRLLNRML 317 (370)
T ss_pred hHHHHHHHHHhHHHHHHHHHH
Confidence 888888777766444433333
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.86 E-value=5.8e-19 Score=178.87 Aligned_cols=275 Identities=23% Similarity=0.273 Sum_probs=175.3
Q ss_pred cEEEECCCHHHHHHHHHh--ccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 57 DVAVVGGGMVGMALACSL--ASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L--~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
|||||||||||+++|+.| ++. |++|+|||+++... ....+....+... ++.++.+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~----g~~Vllid~~~~~~---------~~~~~tW~~~~~~------~~~~~~~v~~- 60 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP----GLSVLLIDPKPKPP---------WPNDRTWCFWEKD------LGPLDSLVSH- 60 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCcccc---------ccCCccccccccc------ccchHHHHhe-
Confidence 899999999999999999 664 99999999987551 0111122222111 1112233322
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
......+.......... .....++++..|.+.|.+.+. .+ ..++.+.+|++|+.
T Consensus 61 --~w~~~~v~~~~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~-~~~~~~~~V~~i~~-------------- 114 (374)
T PF05834_consen 61 --RWSGWRVYFPDGSRILI--------DYPYCMIDRADFYEFLLERAA-AG-GVIRLNARVTSIEE-------------- 114 (374)
T ss_pred --ecCceEEEeCCCceEEc--------ccceEEEEHHHHHHHHHHHhh-hC-CeEEEccEEEEEEe--------------
Confidence 23344444433321111 123357999999999999999 44 35678889999986
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEEecCC-C---cceEEEec----
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-N---YCAWQRFL---- 285 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~---- 285 (514)
.+..+.|.+.+|.+++|++ |+|+|..+......+ .++++...++.+.+ . ...++.+.
T Consensus 115 ------~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~--------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~ 180 (374)
T PF05834_consen 115 ------TGDGVLVVLADGRTIRARVVVDARGPSSPKARPLG--------LQHFYGWEVETDEPVFDPDTATLMDFRVPQS 180 (374)
T ss_pred ------cCceEEEEECCCCEEEeeEEEECCCcccccccccc--------cceeEEEEEeccCCCCCCCceEEEEecccCC
Confidence 4456788889999999999 999997776222211 23445445555544 1 22222222
Q ss_pred --CCCceEEeecCCCceEEEEEcCccchHHhhCCCHHHHHHHHHHhhcC-CCCCCCCCCCCCccccccccccCccccccc
Q 010225 286 --PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKE 362 (514)
Q Consensus 286 --~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (514)
...++|++|.+.++..+-.+.-... ...+.+.+.+.+.+.+.. ++..
T Consensus 181 ~~~~~F~Y~lP~~~~~alvE~T~fs~~----~~~~~~~~~~~l~~~l~~~g~~~-------------------------- 230 (374)
T PF05834_consen 181 ADGPSFLYVLPFSEDRALVEETSFSPR----PALPEEELKARLRRYLERLGIDD-------------------------- 230 (374)
T ss_pred CCCceEEEEEEcCCCeEEEEEEEEcCC----CCCCHHHHHHHHHHHHHHcCCCc--------------------------
Confidence 3467899999999887754432221 113455666666665431 1110
Q ss_pred cccCCCceeee-ccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHH
Q 010225 363 CFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 429 (514)
Q Consensus 363 ~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~ 429 (514)
.++ ..+....|+......+-...+++.+|+|++.++|.+|+++..++..|..+|+.|..
T Consensus 231 --------~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 231 --------YEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred --------eeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 112 22344578755444445566799999999999999999999999999999998886
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.81 E-value=5.9e-19 Score=164.85 Aligned_cols=243 Identities=21% Similarity=0.216 Sum_probs=169.2
Q ss_pred eeE-EEecCCCchhhhhhCCCccCCCCCceEEEEEEE-ecCCC-cceEEEecCCCceEEeecCCCceEEEEEcCccchHH
Q 010225 237 AKL-VGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD 313 (514)
Q Consensus 237 ad~-V~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~ 313 (514)
|.+ |.|||..|.+|+.+... . ......++...+. .+.+. ...+....+.+++.+|+++.+..++.+.++.+....
T Consensus 2 A~LtivaDG~~S~fRk~l~~~-~-~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~ 79 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDN-K-PQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPS 79 (276)
T ss_pred CCEEEEecCCchHHHHhhcCC-C-CceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCC
Confidence 789 99999999999999622 1 1222223332222 22222 455555678899999999999999999888663221
Q ss_pred hhCCCHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccCccccccccccCCCceeeeccceeeeecccccccccccC
Q 010225 314 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 393 (514)
.+..++.+.+.+.......+. ..+.+..-+.. ......|....+.......
T Consensus 80 ---~~~g~l~~yl~~~v~P~LP~~-------lr~~f~~al~~-------------------~rirsMPn~~lp~~~~~~~ 130 (276)
T PF08491_consen 80 ---VSNGELKEYLREVVAPQLPEE-------LRPSFEKALED-------------------GRIRSMPNSFLPASPNWKP 130 (276)
T ss_pred ---ccchHHHHHHHHHHHhhchHH-------HHHHHHHHhcc-------------------CCcceecccccCCCCCCCC
Confidence 223344444444222000000 00011110000 0112244444444444557
Q ss_pred cEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCc
Q 010225 394 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 473 (514)
Q Consensus 394 ~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 473 (514)
+++++|||+++.||++|+||+.|+.|+..|++.|.....-.++-.-.++++.|+.+|++....+..++..++.+|..+++
T Consensus 131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~ 210 (276)
T PF08491_consen 131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD 210 (276)
T ss_pred CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH
Confidence 89999999999999999999999999999999999871111111126799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccChhHHHHHHHHhhcCCCCCCCC
Q 010225 474 PLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 510 (514)
Q Consensus 474 ~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~ 510 (514)
.++.+|+..|..+..-+......+..++|+.+.|.++
T Consensus 211 ~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L 247 (276)
T PF08491_consen 211 YLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVL 247 (276)
T ss_pred HHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHH
Confidence 9999999999999988889999999999999998754
No 63
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.72 E-value=1.1e-15 Score=146.66 Aligned_cols=369 Identities=14% Similarity=0.116 Sum_probs=211.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCC--CCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHH
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLT--KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~--~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~ 130 (514)
...+||+|||||||||++|+.|.|...+ +.++|.|+||...++ .....|..|.|.+++.| +--|.+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---------ghtlSGaviep~aldEL--~P~wke~ 142 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---------GHTLSGAVIEPGALDEL--LPDWKED 142 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC---------Cceecceeeccchhhhh--Ccchhhc
Confidence 4579999999999999999999874221 357999999999885 23334567777766543 1222222
Q ss_pred HhhhccCc--ceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225 131 QQHRHAYF--DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (514)
Q Consensus 131 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~ 208 (514)
......++ +.+.|........++.... ......|.++-..|.+||-+++++.| ++|+-+..+.++..++..++++
T Consensus 143 ~apl~t~vT~d~~~fLt~~~~i~vPv~~p--m~NhGNYvv~L~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edgsVkG 219 (621)
T KOG2415|consen 143 GAPLNTPVTSDKFKFLTGKGRISVPVPSP--MDNHGNYVVSLGQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDGSVKG 219 (621)
T ss_pred CCcccccccccceeeeccCceeecCCCcc--cccCCcEEEEHHHHHHHHHHHHHhhC-ceeccccchhheeEcCCCcEee
Confidence 22112233 3344444433323322211 12233689999999999999999998 9999999999999988888888
Q ss_pred cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh----CCC--ccCCCCC--ceEEEEEEEecCCCcc
Q 010225 209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA----GFK--TTGWSYS--QNAIICTVEHNKENYC 279 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l----~~~--~~~~~~~--~~~~~~~~~~~~~~~~ 279 (514)
+-..+-+ .++++...-.|+-|.+++|+. |.|.|++..+.+++ ..+ .+...|+ ..-++-.-+.......
T Consensus 220 iaT~D~G---I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~ 296 (621)
T KOG2415|consen 220 IATNDVG---ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGE 296 (621)
T ss_pred Eeecccc---ccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcc
Confidence 7655543 234556667788888999999 99999999888776 222 1222221 1112211111111122
Q ss_pred eEEEec----C--CCceEEeecCCCceEEEEEcCccchHHhhCCCH-HHHHHHHHHhhcCCCCCCCCCCCCCcccccccc
Q 010225 280 AWQRFL----P--AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE-DDFVKILNHALDYGYGPHPKSISSGSVDMFSWF 352 (514)
Q Consensus 280 ~~~~~~----~--~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (514)
+.+..+ . -|...++-++++...+.+.+.-+-.. ..+++ .+|.+.= .+|... .-+
T Consensus 297 v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~N--P~lsP~~EFQk~K-------~hP~i~----------~vl 357 (621)
T KOG2415|consen 297 VAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKN--PYLSPYKEFQKMK-------HHPSIS----------KVL 357 (621)
T ss_pred eeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCC--CCCCHHHHHHHhh-------cCcchh----------hhh
Confidence 222111 1 14456677777776666554322110 01122 2222111 011100 000
Q ss_pred ccCccccccccccCCCceeeeccceeeeecccccccccccCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhh
Q 010225 353 RGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 432 (514)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~ 432 (514)
-|. +++....+..+. ...+. .+.....+=+|||=+|+.++=-.-.|.+.||.++..+|+.+-++++
T Consensus 358 eGg------k~i~YgARaLNE-GGfQs-------iPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~ 423 (621)
T KOG2415|consen 358 EGG------KRIAYGARALNE-GGFQS-------IPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIK 423 (621)
T ss_pred cCc------ceeeehhhhhcc-CCccc-------CcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHh
Confidence 010 000000000000 00000 1223334568999999999998999999999999999999999997
Q ss_pred cCCCcchHH-HHHHHHHHhhHHH-HHHHHHHHHHHHhhcCC
Q 010225 433 VGADIGEAS-LLKKYEAERKPAN-IVMMAVLDGFQKAYSVD 471 (514)
Q Consensus 433 ~~~~~~~~~-~l~~Y~~~r~~~~-~~~~~~~~~~~~~~~~~ 471 (514)
...+..... -+..|++.-+..+ .+-.-..+.+...|+..
T Consensus 424 ~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~ 464 (621)
T KOG2415|consen 424 GLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGK 464 (621)
T ss_pred cCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccc
Confidence 653210001 1457877555433 34444566666666644
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.50 E-value=3.9e-13 Score=128.00 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=97.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.++||+||||||+||++|+.|++. |++|+|+||+..++...|.... ......+.....++++++|+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~----G~~V~vlEk~~~~Ggg~~~gg~---~~~~~~~~~~~~~~l~~~gi~------ 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN----GLKVCVLERSLAFGGGSWGGGM---LFSKIVVEKPAHEILDEFGIR------ 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCccccCCCc---ceecccccchHHHHHHHCCCC------
Confidence 468999999999999999999996 9999999999987543331100 000112233344455544431
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
+. . .....+..++..+.+.|.+++.+.| ++++++++|+++...+..
T Consensus 87 ----~~-----~---------------~~~g~~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~~~~--------- 132 (254)
T TIGR00292 87 ----YE-----D---------------EGDGYVVADSAEFISTLASKALQAG-AKIFNGTSVEDLITRDDT--------- 132 (254)
T ss_pred ----ee-----e---------------ccCceEEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEeCCC---------
Confidence 00 0 0011234578899999999999988 999999999999872110
Q ss_pred ccccccccCCeeEEEeC-----------CCcEEEeeE-EEecCCCchhhhhh
Q 010225 214 SATTLFTKGHLAKLDLS-----------DGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~-----------~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
.....|... +..++.|++ |+|+|..|.+.+.+
T Consensus 133 --------~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 133 --------VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred --------CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 012222221 234799999 99999999998877
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.49 E-value=4.2e-13 Score=128.18 Aligned_cols=145 Identities=21% Similarity=0.211 Sum_probs=98.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.++||+||||||+|+++|+.|++. |++|+|+|+...++..-|. .. .......+......+|+++|+.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~----G~~V~liEk~~~~Ggg~~~--gg-~~~~~~~v~~~~~~~l~~~gv~------ 90 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA----GLKVAVFERKLSFGGGMWG--GG-MLFNKIVVQEEADEILDEFGIR------ 90 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCCcccc--Cc-cccccccchHHHHHHHHHCCCC------
Confidence 468999999999999999999996 9999999999876432110 00 0000122334445555555541
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
+.. . ....+.+++..+...|.+.+.+.| ++++++++|+++...+
T Consensus 91 ----~~~-----~---------------~~g~~~vd~~~l~~~L~~~A~~~G-v~I~~~t~V~dl~~~~----------- 134 (257)
T PRK04176 91 ----YKE-----V---------------EDGLYVADSVEAAAKLAAAAIDAG-AKIFNGVSVEDVILRE----------- 134 (257)
T ss_pred ----cee-----e---------------cCcceeccHHHHHHHHHHHHHHcC-CEEEcCceeceeeEeC-----------
Confidence 110 0 011256789999999999999987 9999999999997611
Q ss_pred ccccccccCCeeEEEeC-----------CCcEEEeeE-EEecCCCchhhhhhC
Q 010225 214 SATTLFTKGHLAKLDLS-----------DGTSLYAKL-VGADGGKSRVRELAG 254 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~-----------~g~~~~ad~-V~AdG~~S~vR~~l~ 254 (514)
++....+... +..+++|++ |+|+|.+|.+.+.+.
T Consensus 135 -------~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 135 -------DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred -------CCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 1111222211 234799999 999999999998873
No 66
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.49 E-value=2.5e-12 Score=131.29 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=57.1
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
..++...+.+.|.+.+++.| ++++++++|++++. +++.+.|.+.++ ++.||. |.|+|
T Consensus 140 g~i~p~~~~~~l~~~~~~~g-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~~-~i~a~~vV~aaG 197 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHG-ATVRDGTKVVEIEP--------------------TELLVTVKTTKG-SYQANKLVVTAG 197 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcC-CEEECCCeEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecC
Confidence 45788899999999998887 99999999999976 345567777666 699999 99999
Q ss_pred CC-chhhhhhCCCccC
Q 010225 245 GK-SRVRELAGFKTTG 259 (514)
Q Consensus 245 ~~-S~vR~~l~~~~~~ 259 (514)
.+ +.+++.++...+.
T Consensus 198 ~~~~~l~~~~g~~~~~ 213 (380)
T TIGR01377 198 AWTSKLLSPLGIEIPL 213 (380)
T ss_pred cchHHHhhhcccCCCc
Confidence 87 5677777655443
No 67
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.47 E-value=2.5e-13 Score=131.89 Aligned_cols=161 Identities=22% Similarity=0.272 Sum_probs=101.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeC--hhhHHHHHHcCCcHHHH
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT--PATISFFKEIGAWQYVQ 131 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~l~~lgl~~~~~ 131 (514)
+.+||+||||||||+++|..+++. |.+|+|||+.+.++.+-.. ..+...+++ ....+++.+.+-...+.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~----G~~V~lid~~~k~GrKil~-----sGgGrCN~Tn~~~~~~~ls~~p~~~~fl 72 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKA----GRRVLLIDKGPKLGRKILM-----SGGGRCNFTNSEAPDEFLSRNPGNGHFL 72 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhc----CCEEEEEecCccccceeEe-----cCCCCccccccccHHHHHHhCCCcchHH
Confidence 468999999999999999999996 9999999999988644210 000111111 11234444443222222
Q ss_pred hhhccCcceEEE---EeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcc
Q 010225 132 QHRHAYFDKMQV---WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS 208 (514)
Q Consensus 132 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~ 208 (514)
......+....+ +...+. .+.... ..+.+-....-..+.++|+.++++.+ |+|+.+++|.+++.
T Consensus 73 ~sal~~ft~~d~i~~~e~~Gi---~~~e~~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~-------- 139 (408)
T COG2081 73 KSALARFTPEDFIDWVEGLGI---ALKEED-LGRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEK-------- 139 (408)
T ss_pred HHHHHhCCHHHHHHHHHhcCC---eeEEcc-CceecCCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEe--------
Confidence 222212221111 111111 111000 01111111356889999999999998 99999999999987
Q ss_pred cCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
.+....+.+.+|++++||. |.|+|..|.
T Consensus 140 ------------~~~~f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 140 ------------DDSGFRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred ------------cCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence 4467889999998999999 999997774
No 68
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.42 E-value=2e-12 Score=114.96 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=104.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..||+||||||+||++|+.|++. |++|+||||+-.++...|.-.... -...+...+.++|+++|+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~----g~kV~i~E~~ls~GGG~w~GGmlf---~~iVv~~~a~~iL~e~gI-------- 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA----GLKVAIFERKLSFGGGIWGGGMLF---NKIVVREEADEILDEFGI-------- 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC----CceEEEEEeecccCCccccccccc---ceeeecchHHHHHHHhCC--------
Confidence 56999999999999999999996 999999999998875555211111 124566778888888876
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
++.. ....-|..+...+...|..++.+.| ++|+.++.|.++...+...+
T Consensus 95 --~ye~--------------------~e~g~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~rV-------- 143 (262)
T COG1635 95 --RYEE--------------------EEDGYYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDPRV-------- 143 (262)
T ss_pred --ccee--------------------cCCceEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCCce--------
Confidence 2211 1111256788899999999999998 99999999999987321111
Q ss_pred cccccccCCeeEEEe---------CCCcEEEeeE-EEecCCCchhhhhh
Q 010225 215 ATTLFTKGHLAKLDL---------SDGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~---------~~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
.++.+.. -|--++++++ |+|+|....+-+.+
T Consensus 144 --------aGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 144 --------AGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred --------EEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1122221 1334699999 99999998887666
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.40 E-value=4.1e-12 Score=128.12 Aligned_cols=69 Identities=26% Similarity=0.279 Sum_probs=55.6
Q ss_pred EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCCcEEEeeE-EEe
Q 010225 165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKL-VGA 242 (514)
Q Consensus 165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~-V~A 242 (514)
+..++...+.+.|.+.+++.| ++|+.+++|++++. +++.+. |++.+|. +.||. |.|
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAG-VEIRTGTEVTSIDV--------------------DGGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT--EEEESEEEEEEEE--------------------ETTEEEEEEETTEE-EEECEEEE-
T ss_pred cccccccchhhhhHHHHHHhh-hhccccccccchhh--------------------cccccccccccccc-cccceeEec
Confidence 467899999999999999998 99999999999987 556666 9999998 99999 999
Q ss_pred cCCCchh-hhhhCC
Q 010225 243 DGGKSRV-RELAGF 255 (514)
Q Consensus 243 dG~~S~v-R~~l~~ 255 (514)
+|.++.. .+.++.
T Consensus 199 ~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 199 AGAWSPQLLPLLGL 212 (358)
T ss_dssp -GGGHHHHHHTTTT
T ss_pred ccccceeeeecccc
Confidence 9998865 344443
No 70
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.38 E-value=3.3e-12 Score=114.46 Aligned_cols=146 Identities=21% Similarity=0.213 Sum_probs=94.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.++||+||||||+||++|+.|++. |++|+|||++..++..-|.-... -....+...+..+|+++|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~----g~kV~v~E~~~~~GGg~~~Gg~l---f~~iVVq~~a~~iL~elgi------- 81 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA----GLKVAVIERKLSPGGGMWGGGML---FNKIVVQEEADEILDELGI------- 81 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH----TS-EEEEESSSS-BTTTTS-CTT------EEEETTTHHHHHHHT--------
T ss_pred ccCCEEEECCChhHHHHHHHHHHC----CCeEEEEecCCCCCccccccccc---cchhhhhhhHHHHHHhCCc-------
Confidence 468999999999999999999997 99999999999886554421111 1236677888899988876
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
++.. .....|..+...+...|...+.+.| ++|+..+.|+++...+ +.
T Consensus 82 ---~y~~--------------------~~~g~~v~d~~~~~s~L~s~a~~aG-akifn~~~vEDvi~r~---------~~ 128 (230)
T PF01946_consen 82 ---PYEE--------------------YGDGYYVADSVEFTSTLASKAIDAG-AKIFNLTSVEDVIVRE---------DD 128 (230)
T ss_dssp -----EE---------------------SSEEEES-HHHHHHHHHHHHHTTT-EEEEETEEEEEEEEEC---------SC
T ss_pred ---eeEE--------------------eCCeEEEEcHHHHHHHHHHHHhcCC-CEEEeeeeeeeeEEEc---------CC
Confidence 1110 0112356788999999999998876 9999999999998721 00
Q ss_pred ccccccccCCeeEEEe----C-----CCcEEEeeE-EEecCCCchhhhhh
Q 010225 214 SATTLFTKGHLAKLDL----S-----DGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~----~-----~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
.-.++.+.. . |--+++|++ |+|+|..+.+-+.+
T Consensus 129 -------rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 129 -------RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp -------EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred -------eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 001222222 1 223799999 99999998765544
No 71
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.36 E-value=1.3e-10 Score=118.35 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG 245 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~ 245 (514)
.++...+...+.+.+.+.| ++++++++|++++. .++.+.|...+| ++.||. |.|+|.
T Consensus 145 ~v~p~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~ 202 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAG-AELLFNEPVTAIEA--------------------DGDGVTVTTADG-TYEAKKLVVSAGA 202 (376)
T ss_pred EEcHHHHHHHHHHHHHHCC-CEEECCCEEEEEEe--------------------eCCeEEEEeCCC-EEEeeEEEEecCc
Confidence 4677888888888888877 99999999999986 335677887777 699999 999999
Q ss_pred Cch
Q 010225 246 KSR 248 (514)
Q Consensus 246 ~S~ 248 (514)
++.
T Consensus 203 ~~~ 205 (376)
T PRK11259 203 WVK 205 (376)
T ss_pred chh
Confidence 865
No 72
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.36 E-value=8.6e-11 Score=123.93 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=51.8
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC----cEEEeeE-EE
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKL-VG 241 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~ad~-V~ 241 (514)
.++...+...|...+.+.| ++++.+++|+++.. .++.+.|...++ .++.|++ |+
T Consensus 151 ~vd~~rl~~~l~~~a~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~g~~~~i~a~~VVn 209 (502)
T PRK13369 151 WVDDARLVVLNALDAAERG-ATILTRTRCVSARR--------------------EGGLWRVETRDADGETRTVRARALVN 209 (502)
T ss_pred eecHHHHHHHHHHHHHHCC-CEEecCcEEEEEEE--------------------cCCEEEEEEEeCCCCEEEEEecEEEE
Confidence 4678889999999999988 99999999999986 334566665554 2599999 99
Q ss_pred ecCCCch-hhhhh
Q 010225 242 ADGGKSR-VRELA 253 (514)
Q Consensus 242 AdG~~S~-vR~~l 253 (514)
|+|.|+. +.+++
T Consensus 210 AaG~wa~~l~~~~ 222 (502)
T PRK13369 210 AAGPWVTDVIHRV 222 (502)
T ss_pred CCCccHHHHHhhc
Confidence 9999985 44433
No 73
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.34 E-value=5.9e-11 Score=121.60 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=56.5
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
..++...+.+.|.+.+++.| ++++++++|++++. .++.+.|.+.+| ++.||. |.|+|
T Consensus 144 g~vd~~~l~~aL~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~~~~g-~i~ad~vV~A~G 201 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARG-GEIRLGAEVTALDE--------------------HANGVVVRTTQG-EYEARTLINCAG 201 (393)
T ss_pred eEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCC-EEEeCEEEECCC
Confidence 46788999999999999887 99999999999976 334567777776 699999 99999
Q ss_pred CCch-hhhhhCCC
Q 010225 245 GKSR-VRELAGFK 256 (514)
Q Consensus 245 ~~S~-vR~~l~~~ 256 (514)
.+|. +.+.++.+
T Consensus 202 ~~s~~l~~~~g~~ 214 (393)
T PRK11728 202 LMSDRLAKMAGLE 214 (393)
T ss_pred cchHHHHHHhCCC
Confidence 9984 56666654
No 74
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.34 E-value=1.1e-10 Score=120.40 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=68.3
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG 245 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~ 245 (514)
.++...+...|.+.+.+.| ++++.+++|++++.. +++..+.|.+.+| ++.|+. |.|.|.
T Consensus 179 ~v~p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~------------------~~~~~~~v~t~~g-~i~a~~vVvaagg 238 (407)
T TIGR01373 179 TARHDAVAWGYARGADRRG-VDIIQNCEVTGFIRR------------------DGGRVIGVETTRG-FIGAKKVGVAVAG 238 (407)
T ss_pred cCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc------------------CCCcEEEEEeCCc-eEECCEEEECCCh
Confidence 4566778888999999888 999999999999750 0123345777777 589987 565555
Q ss_pred C-chhhhhhCCCccCCCCCceEEEEEEEecCCCcceEEEecCCCceEEeecCCCceEEE
Q 010225 246 K-SRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV 303 (514)
Q Consensus 246 ~-S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 303 (514)
+ +.+++.++.+.....+....+. .+ .............++.+++.|..++...+.
T Consensus 239 ~~~~l~~~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig 294 (407)
T TIGR01373 239 HSSVVAAMAGFRLPIESHPLQALV--SE-PLKPIIDTVVMSNAVHFYVSQSDKGELVIG 294 (407)
T ss_pred hhHHHHHHcCCCCCcCcccceEEE--ec-CCCCCcCCeEEeCCCceEEEEcCCceEEEe
Confidence 5 5777777665544443322221 11 111100011122456677888877654444
No 75
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.32 E-value=1.1e-10 Score=122.93 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=48.1
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC---Cc--EEEeeE-E
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKL-V 240 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~--~~~ad~-V 240 (514)
.++...+...|.+.+.+.| ++++.+++|+++.. .++.+.|...+ |+ ++.|+. |
T Consensus 151 ~vd~~rl~~~l~~~A~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~a~~VV 209 (508)
T PRK12266 151 WVDDARLVVLNARDAAERG-AEILTRTRVVSARR--------------------ENGLWHVTLEDTATGKRYTVRARALV 209 (508)
T ss_pred ccCHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEEcCCCCEEEEEcCEEE
Confidence 3567888888888888887 99999999999976 33455565543 43 699999 9
Q ss_pred EecCCCch
Q 010225 241 GADGGKSR 248 (514)
Q Consensus 241 ~AdG~~S~ 248 (514)
+|+|.|+.
T Consensus 210 nAaG~wa~ 217 (508)
T PRK12266 210 NAAGPWVK 217 (508)
T ss_pred ECCCccHH
Confidence 99999984
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.31 E-value=1.1e-11 Score=125.74 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=80.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCCceEEe-----ChhhHHHHHH
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDPRVSTV-----TPATISFFKE 123 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~-------~~~~~~~~~~~~~~~l-----~~~~~~~l~~ 123 (514)
|||+||||||||+++|+.|++. |.+|+|+||++.++.+ -|...........+.- ..-....|+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~----g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~ 76 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK----GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR 76 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence 7999999999999999999996 9999999999988633 1221110111111110 1122344555
Q ss_pred cCCcHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCC
Q 010225 124 IGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS 203 (514)
Q Consensus 124 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~ 203 (514)
++.. ++...-. . .++......... .|+ ..-...++.++|++.+++.+ |+|+++++|.+++.
T Consensus 77 f~~~-d~~~ff~-~-~Gv~~~~~~~gr--~fP----------~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~--- 137 (409)
T PF03486_consen 77 FSPE-DLIAFFE-E-LGVPTKIEEDGR--VFP----------KSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEK--- 137 (409)
T ss_dssp S-HH-HHHHHHH-H-TT--EEE-STTE--EEE----------TT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEE---
T ss_pred CCHH-HHHHHHH-h-cCCeEEEcCCCE--ECC----------CCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeee---
Confidence 4421 1111110 0 011111111111 111 11246889999999999988 99999999999987
Q ss_pred CCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 204 SSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
++++...|+++++.++.||. |.|+|..|.
T Consensus 138 ----------------~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 ----------------KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp ----------------ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred ----------------cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 12344888887778899999 999998774
No 77
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.29 E-value=4.1e-10 Score=116.13 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=50.1
Q ss_pred EehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC-----cEEEeeE-EE
Q 010225 168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKL-VG 241 (514)
Q Consensus 168 i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~-V~ 241 (514)
++...+...|.+.+++.| ++++++++|++++. .++.+.+...++ .+++||. |.
T Consensus 194 ~~~~~~~~~l~~~a~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~~~i~a~~vV~ 252 (410)
T PRK12409 194 GDIHKFTTGLAAACARLG-VQFRYGQEVTSIKT--------------------DGGGVVLTVQPSAEHPSRTLEFDGVVV 252 (410)
T ss_pred cCHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------eCCEEEEEEEcCCCCccceEecCEEEE
Confidence 455788889999999988 99999999999976 334455544332 3699999 99
Q ss_pred ecCCCch-hhhhhCC
Q 010225 242 ADGGKSR-VRELAGF 255 (514)
Q Consensus 242 AdG~~S~-vR~~l~~ 255 (514)
|+|.+|. +.+.++.
T Consensus 253 a~G~~s~~l~~~~~~ 267 (410)
T PRK12409 253 CAGVGSRALAAMLGD 267 (410)
T ss_pred CCCcChHHHHHHhCC
Confidence 9999985 4444443
No 78
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.28 E-value=3.1e-10 Score=123.81 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=51.8
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG 245 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~ 245 (514)
.++...+...|.+.+.+ | ++++++++|++++. .++.+.|.+.+|..+.||. |.|+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-G-v~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-Q-LTIHFGHEVARLER--------------------EDDGWQLDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred eeCHHHHHHHHHHhccc-C-cEEEeCCEeeEEEE--------------------eCCEEEEEECCCcEEECCEEEECCCC
Confidence 46888999999999988 6 99999999999976 3456778888887788999 999999
Q ss_pred Cch
Q 010225 246 KSR 248 (514)
Q Consensus 246 ~S~ 248 (514)
+|.
T Consensus 462 ~s~ 464 (662)
T PRK01747 462 DAA 464 (662)
T ss_pred Ccc
Confidence 985
No 79
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.28 E-value=1.3e-10 Score=116.92 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=105.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhH-------------HH
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI-------------SF 120 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~ 120 (514)
+.+||+|||||+.|+++|+.|+++. ..++|+|+||.+.++........+. ...|+...|.+. ++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~--p~~~V~llEk~~~~a~~sS~~NSgv-iHag~~y~p~slka~l~~~g~~~~~~~ 78 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYE--PDLSVALLEKEDGVAQESSSNNSGV-IHAGLYYTPGSLKAKLCVAGNINEFAI 78 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhC--CCceEEEEEccCccccccccCcccc-eeccccCCCcchhhHHHHHHHHHHHHH
Confidence 5789999999999999999999972 1399999999998864433211111 111122222211 11
Q ss_pred HHHcCC-------------------cHHHHhhhc-cCcceEEEEeCCCcceeeeccC----CCCCcccEEEEehHHHHHH
Q 010225 121 FKEIGA-------------------WQYVQQHRH-AYFDKMQVWDYTGLGYTKYNAR----DVNKEILGCVVENKVLHSS 176 (514)
Q Consensus 121 l~~lgl-------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~l~~~ 176 (514)
-+++++ .+.+.+... ..+..+...+............ .....+.+..++...+...
T Consensus 79 ~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 79 CKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred HHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 112210 000000000 0011111112111111100000 0001122356889999999
Q ss_pred HHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCC-eeEEEeCCCcE-EEeeE-EEecCCCch-hhhh
Q 010225 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDGTS-LYAKL-VGADGGKSR-VREL 252 (514)
Q Consensus 177 L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~-~~ad~-V~AdG~~S~-vR~~ 252 (514)
|.+.++++| +++++|++|+++++ .++ ...+.+.+|++ ++|++ |.|.|..|- +-++
T Consensus 159 l~e~a~~~g-~~i~ln~eV~~i~~--------------------~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~ 217 (429)
T COG0579 159 LAEEAQANG-VELRLNTEVTGIEK--------------------QSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQM 217 (429)
T ss_pred HHHHHHHcC-CEEEecCeeeEEEE--------------------eCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHH
Confidence 999999997 99999999999988 334 67778888876 99999 999998874 5566
Q ss_pred hCCCc
Q 010225 253 AGFKT 257 (514)
Q Consensus 253 l~~~~ 257 (514)
.|...
T Consensus 218 ~g~~~ 222 (429)
T COG0579 218 AGIPE 222 (429)
T ss_pred hCCCc
Confidence 66554
No 80
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.25 E-value=3.9e-10 Score=116.57 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=47.8
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEeCCCcEEEeeE-EEecC
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~AdG 244 (514)
.++...+...|.+.+++.| ++|+++++|++++. .++. +.|...++ ++.||. |.|+|
T Consensus 197 ~~~p~~~~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~v~t~~~-~~~a~~VV~a~G 254 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLG-VKFRFNTPVDGLLV--------------------EGGRITGVQTGGG-VITADAYVVALG 254 (416)
T ss_pred cCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEEeCCc-EEeCCEEEECCC
Confidence 3566789999999998887 99999999999976 2233 34665544 699999 99999
Q ss_pred CCch
Q 010225 245 GKSR 248 (514)
Q Consensus 245 ~~S~ 248 (514)
.++.
T Consensus 255 ~~~~ 258 (416)
T PRK00711 255 SYST 258 (416)
T ss_pred cchH
Confidence 9985
No 81
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.16 E-value=2.5e-10 Score=119.51 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=93.8
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceEEeChhhHHHHHHcC-CcHHH
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYV 130 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~ 130 (514)
...|||+|||||+||+.+|+.+++. |.+|+|+|++. .++..+|. +...+..- ....+-++.+| +...+
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~----G~kV~LiE~~~d~iG~m~Cn-----psiGG~ak-g~lvrEidalGg~~g~~ 71 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM----GAKTLLLTHNLDTIGQMSCN-----PAIGGIAK-GHLVREIDALGGEMGKA 71 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc----CCcEEEEecccccccccCCc-----cccccchh-hHHHHHHHhcCCHHHHH
Confidence 3469999999999999999999997 99999999984 33322331 11111110 11122233343 21222
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccC
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
..... + .+.+.+......+ ......+++..+...|.+.+.+.++++++ ...|+++..
T Consensus 72 ~d~~g--i-q~r~ln~skGpAV---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~---------- 128 (618)
T PRK05192 72 IDKTG--I-QFRMLNTSKGPAV---------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV---------- 128 (618)
T ss_pred Hhhcc--C-ceeecccCCCCce---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe----------
Confidence 21111 1 1222221110000 00012578899999999999888678875 457888875
Q ss_pred CCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 211 STPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
+++....|.+.+|..+.|+. |+|+|.++.=
T Consensus 129 ---------e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 129 ---------ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred ---------cCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 12244557888899999999 9999987643
No 82
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.14 E-value=1.7e-09 Score=99.48 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=80.3
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC--CCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE--DPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
+|+|||+||+|+++|+.|+.+ |++|+||||....+.+-...+. ....-..-.+.++...+++-+ +.+.+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a----G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~g 75 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA----GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDG 75 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc----CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCC
Confidence 699999999999999999997 9999999999876533221111 111112233444444443321 2222222
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
....-.-.+|...+.. ..-.. ...++-..-.-+.|.++|.. . .+|.++++|+.+-.
T Consensus 76 lV~~W~~~~~~~~~~~-~~~~~---d~~pyvg~pgmsalak~LAt-----d-L~V~~~~rVt~v~~-------------- 131 (331)
T COG3380 76 LVDVWTPAVWTFTGDG-SPPRG---DEDPYVGEPGMSALAKFLAT-----D-LTVVLETRVTEVAR-------------- 131 (331)
T ss_pred ceeeccccccccccCC-CCCCC---CCCccccCcchHHHHHHHhc-----c-chhhhhhhhhhhee--------------
Confidence 2111111112111111 00000 01111111122344444433 2 67899999999987
Q ss_pred cccccccCCeeEEEeCCCc-EEEeeE-EEec
Q 010225 215 ATTLFTKGHLAKLDLSDGT-SLYAKL-VGAD 243 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~-~~~ad~-V~Ad 243 (514)
.++.++++.++|. ...+|. |.|-
T Consensus 132 ------~~~~W~l~~~~g~~~~~~d~vvla~ 156 (331)
T COG3380 132 ------TDNDWTLHTDDGTRHTQFDDVVLAI 156 (331)
T ss_pred ------cCCeeEEEecCCCcccccceEEEec
Confidence 5688999997765 577777 6653
No 83
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.12 E-value=3.1e-09 Score=114.50 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=52.2
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE-E
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL-V 240 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~-V 240 (514)
.++...+...|.+.+++.| ++++.+++|+++..+ .+ .+..+.|.. .+++ ++.||. |
T Consensus 228 ~vdp~rl~~al~~~A~~~G-a~i~~~~~V~~l~~~---------~~--------~g~v~gV~v~d~~tg~~~~i~a~~VV 289 (627)
T PLN02464 228 QMNDSRLNVALACTAALAG-AAVLNYAEVVSLIKD---------ES--------TGRIVGARVRDNLTGKEFDVYAKVVV 289 (627)
T ss_pred EEcHHHHHHHHHHHHHhCC-cEEEeccEEEEEEEe---------cC--------CCcEEEEEEEECCCCcEEEEEeCEEE
Confidence 4688999999999999998 999999999999761 00 122333333 2343 689999 9
Q ss_pred EecCCCch-hhhhhCC
Q 010225 241 GADGGKSR-VRELAGF 255 (514)
Q Consensus 241 ~AdG~~S~-vR~~l~~ 255 (514)
.|+|.||. +++.++.
T Consensus 290 nAaGaws~~l~~~~g~ 305 (627)
T PLN02464 290 NAAGPFCDEVRKMADG 305 (627)
T ss_pred ECCCHhHHHHHHhccC
Confidence 99999986 6676653
No 84
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.12 E-value=2.1e-10 Score=106.19 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=77.3
Q ss_pred EEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhccC
Q 010225 59 AVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY 137 (514)
Q Consensus 59 vIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~ 137 (514)
+||||||+||++|+.|.+. |++ |+|||+++.++........ . .+ ...+. ... . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~----g~~~v~v~e~~~~~Gg~w~~~~~-~--~~--~~~~~---------~~~----~---~ 55 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER----GIDPVVVLERNDRPGGVWRRYYS-Y--TR--LHSPS---------FFS----S---D 55 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT----T---EEEEESSSSSTTHHHCH-T-T--TT---BSSS---------CCT----G---G
T ss_pred CEECcCHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCeeEEeCC-C--Cc--cccCc---------ccc----c---c
Confidence 7999999999999999997 899 9999999877432110000 0 00 00000 000 0 0
Q ss_pred cceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcccc
Q 010225 138 FDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATT 217 (514)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 217 (514)
+ .+. +.. ...+.... .............+.++|.+.+++.+ ++++++++|+++.+
T Consensus 56 ~-~~~--~~~---~~~~~~~~-~~~~~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~----------------- 110 (203)
T PF13738_consen 56 F-GLP--DFE---SFSFDDSP-EWRWPHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRR----------------- 110 (203)
T ss_dssp S-S----CCC---HSCHHHHH-HHHHSBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEE-----------------
T ss_pred c-cCC--ccc---ccccccCC-CCCCCcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEE-----------------
Confidence 0 000 000 00000000 00000112678889999999999987 88999999999998
Q ss_pred ccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 218 LFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 218 ~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.|++.++.+++||. |.|+|..|.-
T Consensus 111 ---~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 111 ---DGDGWTVTTRDGRTIRADRVVLATGHYSHP 140 (203)
T ss_dssp ---ETTTEEEEETTS-EEEEEEEEE---SSCSB
T ss_pred ---eccEEEEEEEecceeeeeeEEEeeeccCCC
Confidence 4456999999998899999 9999986653
No 85
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.09 E-value=1.1e-09 Score=113.57 Aligned_cols=160 Identities=12% Similarity=0.162 Sum_probs=89.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
....+|+||||||+||++|..|.+. |++|+|||+++..+..+.+........ .++.+.....- -.+++.+.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~----G~~v~vfE~~~~vGG~W~~~~~~~~d~--~~~~~~~~~~~--s~~Y~~L~t 79 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRRE----GHTVVVFEREKQVGGLWVYTPKSESDP--LSLDPTRSIVH--SSVYESLRT 79 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhc----CCeEEEEecCCCCcceeecCCCcCCCc--cccCCCCcccc--hhhhhhhhc
Confidence 3467999999999999999999996 999999999998864332221111000 11111000000 000111110
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCce--EEcCCeeEEEeeCCCCCCcccC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSSSISVD 210 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~--v~~~~~v~~v~~~~~~~~~~~~ 210 (514)
+. +-..+.+.+...... +. ...... .....+.++.++|.+.+++.+ +. |+++++|++++.
T Consensus 80 n~--p~~~m~f~dfp~~~~--~~--~~~~~~-~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~---------- 141 (461)
T PLN02172 80 NL--PRECMGYRDFPFVPR--FD--DESRDS-RRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEP---------- 141 (461)
T ss_pred cC--CHhhccCCCCCCCcc--cc--cccCcC-CCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEee----------
Confidence 00 000011111000000 00 000000 112457889999999999887 66 899999999976
Q ss_pred CCCccccccccCCeeEEEeCCC--c--EEEeeE-EEecCCCch
Q 010225 211 STPSATTLFTKGHLAKLDLSDG--T--SLYAKL-VGADGGKSR 248 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~v~~~~g--~--~~~ad~-V~AdG~~S~ 248 (514)
.++.+.|+..++ . +..+|. |.|+|..+.
T Consensus 142 ----------~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 142 ----------VDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred ----------cCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 345677776543 2 467899 999998653
No 86
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.08 E-value=8.7e-10 Score=115.20 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=54.9
Q ss_pred EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCCc--EEEeeE
Q 010225 165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKL 239 (514)
Q Consensus 165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~ 239 (514)
+..++...+.+.|.+.+++.|+++|+++++|++++. +.++.+.+.. .+|. ++.|++
T Consensus 177 ~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~-------------------~~dg~~~v~~~~~~~G~~~~i~A~~ 237 (494)
T PRK05257 177 GTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR-------------------NDDGSWTVTVKDLKTGEKRTVRAKF 237 (494)
T ss_pred ceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE-------------------CCCCCEEEEEEEcCCCceEEEEcCE
Confidence 357888999999999999887689999999999986 1223355543 3353 699999
Q ss_pred -EEecCCCc-hhhhhhCCC
Q 010225 240 -VGADGGKS-RVRELAGFK 256 (514)
Q Consensus 240 -V~AdG~~S-~vR~~l~~~ 256 (514)
|.|+|.+| .+++.+|..
T Consensus 238 VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 238 VFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EEECCCcchHHHHHHcCCC
Confidence 88888876 466777665
No 87
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.07 E-value=2.9e-09 Score=110.98 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=55.8
Q ss_pred EEEehHHHHHHHHHHHhc----CC-CceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-
Q 010225 166 CVVENKVLHSSLLSCMQN----TE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL- 239 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~----~g-~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~- 239 (514)
..++...+...|.+.+++ .| +++|+++++|++++. +.++.+.|.+.+| ++.||.
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-------------------~~~~~~~V~T~~G-~i~A~~V 265 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-------------------SNDSLYKIHTNRG-EIRARFV 265 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-------------------cCCCeEEEEECCC-EEEeCEE
Confidence 467888999999999988 55 378999999999986 1245677888777 599999
Q ss_pred EEecCCCch-hhhhhCC
Q 010225 240 VGADGGKSR-VRELAGF 255 (514)
Q Consensus 240 V~AdG~~S~-vR~~l~~ 255 (514)
|.|.|.||. +-+.+|.
T Consensus 266 VvaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 266 VVSACGYSLLFAQKMGY 282 (497)
T ss_pred EECcChhHHHHHHHhCC
Confidence 999999985 5566654
No 88
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.07 E-value=8.1e-09 Score=108.27 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=46.6
Q ss_pred cEEEECCCHHHHHHHHHhccCCCC--CCcEEEEEcCCCCCCCCCCCCCC-CCC-CCce---EEeChhhHHHHHHcCCcHH
Q 010225 57 DVAVVGGGMVGMALACSLASMPLT--KHLSVAIIDSNPALGKSNFIKKE-DPP-DPRV---STVTPATISFFKEIGAWQY 129 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~--~g~~V~viE~~~~~~~~~~~~~~-~~~-~~~~---~~l~~~~~~~l~~lgl~~~ 129 (514)
+|+|||||++||++|+.|++.+.. .|++|+|+|+++.++........ +.. ...+ ..-.+...++++++|+.+.
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~ 82 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE 82 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence 699999999999999999985100 14899999999988644321110 000 0001 1123556777888887544
No 89
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.06 E-value=2.5e-08 Score=101.95 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=52.0
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
..++...+...|.+.+.+.|...+..++.++.++. ....+.|.+.+|. ++||. |.|+|
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--------------------~~~~~~v~t~~g~-i~a~~vv~a~G 209 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLER--------------------DGRVVGVETDGGT-IEADKVVLAAG 209 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe--------------------cCcEEEEEeCCcc-EEeCEEEEcCc
Confidence 35677899999999999998567777999999975 1146778888887 99999 99999
Q ss_pred CCchhh
Q 010225 245 GKSRVR 250 (514)
Q Consensus 245 ~~S~vR 250 (514)
.++..-
T Consensus 210 ~~~~~l 215 (387)
T COG0665 210 AWAGEL 215 (387)
T ss_pred hHHHHH
Confidence 998754
No 90
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.05 E-value=9e-09 Score=97.56 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=104.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChh--hHH----HHHHcC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA--TIS----FFKEIG 125 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~----~l~~lg 125 (514)
+.+..||+|||||+-|+++|+.|++. |.+++++|+.+.+...+. .++..-.+-+. -.. .++.+.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~----g~killLeqf~~ph~~GS------Shg~sRIiR~~Y~e~~Y~~m~~ea~e 73 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR----GDKILLLEQFPLPHSRGS------SHGISRIIRPAYAEDKYMSMVLEAYE 73 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc----CCeEEEEeccCCCcccCc------ccCcceeechhhhhHHHHHHHHHHHH
Confidence 45678999999999999999999995 999999999998865442 12111111111 000 011111
Q ss_pred CcHHHHhhhcc--CcceEEEEeCCCc-------------------------------ceeeeccCCC-CCcccEEEEehH
Q 010225 126 AWQYVQQHRHA--YFDKMQVWDYTGL-------------------------------GYTKYNARDV-NKEILGCVVENK 171 (514)
Q Consensus 126 l~~~~~~~~~~--~~~~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~~~~~i~r~ 171 (514)
.|-.+...... ......++.+... ....++.... -....+-++...
T Consensus 74 ~W~~~~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~ 153 (399)
T KOG2820|consen 74 KWRNLPEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAA 153 (399)
T ss_pred HHHhChhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHH
Confidence 12221111110 0111112211110 0001111100 011223457788
Q ss_pred HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC--ch
Q 010225 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK--SR 248 (514)
Q Consensus 172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~--S~ 248 (514)
+-.++|.+.+++.| +.++.|.+|+.+... + +.+..+.|++.+|..++|+. |.+.|+| +-
T Consensus 154 kslk~~~~~~~~~G-~i~~dg~~v~~~~~~-----------~------e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 154 KSLKALQDKARELG-VIFRDGEKVKFIKFV-----------D------EEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred HHHHHHHHHHHHcC-eEEecCcceeeEeec-----------c------CCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 88999999999998 899999999998761 1 14577889999999999999 9999987 33
Q ss_pred hhhhhCC
Q 010225 249 VRELAGF 255 (514)
Q Consensus 249 vR~~l~~ 255 (514)
++..++.
T Consensus 216 L~~~~~~ 222 (399)
T KOG2820|consen 216 LPTSLAI 222 (399)
T ss_pred cCccccc
Confidence 4443433
No 91
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.05 E-value=1.7e-09 Score=114.99 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=51.4
Q ss_pred EEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCC-eeEEEe---CCC--cEEEeeE-
Q 010225 167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDL---SDG--TSLYAKL- 239 (514)
Q Consensus 167 ~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~---~~g--~~~~ad~- 239 (514)
.++...+...+...+.++| ++++++++|+++.. .++ .+.|.+ .++ .++.||.
T Consensus 145 ~vdp~rl~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~d~~~g~~~~i~A~~V 203 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHG-AQILTYHEVTGLIR--------------------EGDTVCGVRVRDHLTGETQEIHAPVV 203 (546)
T ss_pred EECHHHHHHHHHHHHHhCC-CEEEeccEEEEEEE--------------------cCCeEEEEEEEEcCCCcEEEEECCEE
Confidence 5788999999999999988 99999999999986 222 233443 223 3699999
Q ss_pred EEecCCCch-hhhhhCC
Q 010225 240 VGADGGKSR-VRELAGF 255 (514)
Q Consensus 240 V~AdG~~S~-vR~~l~~ 255 (514)
|.|+|.|+. +.++.+.
T Consensus 204 VnAaG~wa~~l~~~~g~ 220 (546)
T PRK11101 204 VNAAGIWGQHIAEYADL 220 (546)
T ss_pred EECCChhHHHHHHhcCC
Confidence 999999985 4555554
No 92
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.05 E-value=7.1e-09 Score=106.56 Aligned_cols=170 Identities=16% Similarity=0.266 Sum_probs=105.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC---cH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA---WQ 128 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl---~~ 128 (514)
.+.++||+|||||+.|+-+|+-++. +|++|+|+|+++..+ ...++...|-..+++.|++..+ .+
T Consensus 9 ~~~~~DviVIGGGitG~GiArDaA~----RGl~v~LvE~~D~As---------GTSsrstkLiHGGlRYl~~~e~~lvrE 75 (532)
T COG0578 9 RMEEFDVIVIGGGITGAGIARDAAG----RGLKVALVEKGDLAS---------GTSSRSTKLIHGGLRYLEQYEFSLVRE 75 (532)
T ss_pred cccCCCEEEECCchhhHHHHHHHHh----CCCeEEEEecCcccC---------cccCccccCccchhhhhhhcchHHHHH
Confidence 3478999999999999999999999 599999999999764 2334455555666666665422 12
Q ss_pred HHHhhhc---------cCcceE-EEEeCC-----------------Cc-----ceeeeccC-------CC-------CCc
Q 010225 129 YVQQHRH---------AYFDKM-QVWDYT-----------------GL-----GYTKYNAR-------DV-------NKE 162 (514)
Q Consensus 129 ~~~~~~~---------~~~~~~-~~~~~~-----------------~~-----~~~~~~~~-------~~-------~~~ 162 (514)
.+.+... .+...+ -+++.. +. ....+... .+ ...
T Consensus 76 al~Er~vL~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~ 155 (532)
T COG0578 76 ALAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFR 155 (532)
T ss_pred HHHHHHHHHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEE
Confidence 2222111 111000 001100 00 00000000 00 001
Q ss_pred ccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC---c--EEEe
Q 010225 163 ILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---T--SLYA 237 (514)
Q Consensus 163 ~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g---~--~~~a 237 (514)
+.-+.++-..|.-.....+.+.| .+++..++|+.+.+ +++.+.|...|. + +++|
T Consensus 156 y~D~~vddaRLv~~~a~~A~~~G-a~il~~~~v~~~~r--------------------e~~v~gV~~~D~~tg~~~~ira 214 (532)
T COG0578 156 YPDGVVDDARLVAANARDAAEHG-AEILTYTRVESLRR--------------------EGGVWGVEVEDRETGETYEIRA 214 (532)
T ss_pred EccceechHHHHHHHHHHHHhcc-cchhhcceeeeeee--------------------cCCEEEEEEEecCCCcEEEEEc
Confidence 11245777788888888888888 89999999999987 334566766543 3 5999
Q ss_pred eE-EEecCCCch-hhhhhCC
Q 010225 238 KL-VGADGGKSR-VRELAGF 255 (514)
Q Consensus 238 d~-V~AdG~~S~-vR~~l~~ 255 (514)
+. |+|+|.|+- +++..+.
T Consensus 215 ~~VVNAaGpW~d~i~~~~~~ 234 (532)
T COG0578 215 RAVVNAAGPWVDEILEMAGL 234 (532)
T ss_pred CEEEECCCccHHHHHHhhcc
Confidence 99 999999996 4666643
No 93
>PLN02661 Putative thiazole synthesis
Probab=99.05 E-value=4.3e-09 Score=103.16 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=86.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.++||+|||||++|+++|+.|++. .|++|+||||...++...|.... ......+.....++|+++|+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~---~g~kV~viEk~~~~GGG~~~gg~---l~~~~vv~~~a~e~LeElGV------- 157 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN---PNVKVAIIEQSVSPGGGAWLGGQ---LFSAMVVRKPAHLFLDELGV------- 157 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc---CCCeEEEEecCcccccceeeCcc---cccccccccHHHHHHHHcCC-------
Confidence 468999999999999999999975 38999999998877543331000 00011122224455555554
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
+++. ... +....+-..+.+.|.+.+.+.++++++.++.|+++..+
T Consensus 158 ---~fd~------~dg--------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~------------ 202 (357)
T PLN02661 158 ---PYDE------QEN--------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK------------ 202 (357)
T ss_pred ---Cccc------CCC--------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec------------
Confidence 1110 000 00111335566788887776656999999999999871
Q ss_pred ccccccccCCeeEEEe-------C--C-----CcEEEeeE-EEecCCCchh
Q 010225 214 SATTLFTKGHLAKLDL-------S--D-----GTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~-------~--~-----g~~~~ad~-V~AdG~~S~v 249 (514)
++....+.+ . + ...+.|+. |.|+|..+++
T Consensus 203 -------~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ 246 (357)
T PLN02661 203 -------GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPF 246 (357)
T ss_pred -------CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcc
Confidence 112222221 1 1 12589999 9999977654
No 94
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.04 E-value=1.3e-07 Score=99.13 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=47.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCC-CC-CCceE---EeChhhHHHHHHcCCcHHH
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKED-PP-DPRVS---TVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~-~~-~~~~~---~l~~~~~~~l~~lgl~~~~ 130 (514)
.||+|||||++||++|+.|++...+.|++|+|+|+++.++......... .. ...+. .-.++..++++++|+...+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 5899999999999999999994100189999999999875332111000 00 00001 1124577888888875543
No 95
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.04 E-value=5.9e-09 Score=108.89 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=54.2
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEe---CCC--cEEEeeE-
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDG--TSLYAKL- 239 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g--~~~~ad~- 239 (514)
..++...+...|.+.+++.| ++|+++++|++++. ++++.+.+.. .+| .+++||+
T Consensus 173 g~Vdp~~l~~aL~~~a~~~G-v~i~~~t~V~~i~~-------------------~~~~~v~v~~~~~~~g~~~~i~A~~V 232 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNG-TTIRFGHEVRNLKR-------------------QSDGSWTVTVKNTRTGGKRTLNTRFV 232 (483)
T ss_pred EEECHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-------------------cCCCeEEEEEeeccCCceEEEECCEE
Confidence 46899999999999999887 99999999999976 1223455543 234 2689999
Q ss_pred EEecCCCc-hhhhhhCCC
Q 010225 240 VGADGGKS-RVRELAGFK 256 (514)
Q Consensus 240 V~AdG~~S-~vR~~l~~~ 256 (514)
|.|.|.+| .+++.+|..
T Consensus 233 V~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 99999876 467777765
No 96
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.03 E-value=1.4e-10 Score=119.87 Aligned_cols=152 Identities=21% Similarity=0.234 Sum_probs=36.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeCh-hhHHHHHHcCCcHHHHhhhc
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl~~~~~~~~~ 135 (514)
|||||||||+|+++|+.+++. |.+|+|||+...++.... .+....+.. .... ...-|+..++.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~----G~~VlLiE~~~~lGG~~t-------~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~ 68 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA----GAKVLLIEKGGFLGGMAT-------SGGVSPFDGNHDED-QVIGGIFREFLNRLR 68 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT----TS-EEEE-SSSSSTGGGG-------GSSS-EETTEEHHH-HHHHHHHHHHHHST-
T ss_pred CEEEECccHHHHHHHHHHHHC----CCEEEEEECCccCCCcce-------ECCcCChhhcchhh-ccCCCHHHHHHHHHh
Confidence 899999999999999999997 999999999998753221 111111111 1111 111133444444222
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
. .... ... ........+.+++..+...|.+.+.+.| ++|+++++|+++..+
T Consensus 69 ~-~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~~-------------- 119 (428)
T PF12831_consen 69 A-RGGY-----------PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIRD-------------- 119 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-hccc-----------ccc--cccccccccccccccccccccccccccc-ccccccccccccccc--------------
Confidence 1 0000 000 0000000135667777788888887766 999999999999871
Q ss_pred ccccccCCeeEEEeCC--C-cEEEeeE-EEecCCCchhhhhhCC
Q 010225 216 TTLFTKGHLAKLDLSD--G-TSLYAKL-VGADGGKSRVRELAGF 255 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~--g-~~~~ad~-V~AdG~~S~vR~~l~~ 255 (514)
.+....|.+.+ | .++.|++ |+|+|- +.+-...|.
T Consensus 120 -----~~~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 120 -----GGRITGVIVETKSGRKEIRAKVFIDATGD-GDLAALAGA 157 (428)
T ss_dssp --------------------------------------------
T ss_pred -----ccccccccccccccccccccccccccccc-ccccccccc
Confidence 12333444433 3 4799999 999994 555444443
No 97
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.02 E-value=5e-09 Score=108.83 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=54.7
Q ss_pred EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEE---eCCCc--EEEeeE
Q 010225 165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKL 239 (514)
Q Consensus 165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~--~~~ad~ 239 (514)
+..++...+.+.|.+.+.+.++++++++++|+++++ +.++.|.+. ..++. +++||+
T Consensus 178 ~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~-------------------~~d~~w~v~v~~t~~g~~~~i~Ad~ 238 (497)
T PRK13339 178 GTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER-------------------LSDGGWEVTVKDRNTGEKREQVADY 238 (497)
T ss_pred ceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------CCCCCEEEEEEecCCCceEEEEcCE
Confidence 356889999999999997554499999999999976 113456665 33452 689999
Q ss_pred -EEecCCCch-hhhhhCCC
Q 010225 240 -VGADGGKSR-VRELAGFK 256 (514)
Q Consensus 240 -V~AdG~~S~-vR~~l~~~ 256 (514)
|.|.|.+|. +.+.+|..
T Consensus 239 VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 239 VFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred EEECCCcchHHHHHHcCCC
Confidence 999999984 56666654
No 98
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.02 E-value=3.4e-09 Score=105.45 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=89.6
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCceEEeCh-hhHHHHHHcC-CcHHHHhh
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIG-AWQYVQQH 133 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~vi-E~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lg-l~~~~~~~ 133 (514)
||+|||||.||+.+|+.+++. |.+|+|| ++.+..+..+|. + .-.++.. ...+.++.+| +.-.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~----G~~V~Lit~~~d~i~~~~Cn-----p--sigg~~kg~L~~Eidalgg~m~~~aD~ 69 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM----GAKVLLITHNTDTIGEMSCN-----P--SIGGIAKGHLVREIDALGGLMGRAADE 69 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----T--EEEEES-GGGTT--SSS-----S--EEESTTHHHHHHHHHHTT-SHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEeecccccccccch-----h--hhccccccchhHHHhhhhhHHHHHHhH
Confidence 899999999999999999997 9999999 555555444441 1 1111111 1122344454 21122111
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
.. -.+++.+.... ......-+.++|..+.+++.+.+++.++++|+. .+|+++..
T Consensus 70 ~~---i~~~~lN~skG---------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~------------- 123 (392)
T PF01134_consen 70 TG---IHFRMLNRSKG---------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV------------- 123 (392)
T ss_dssp HE---EEEEEESTTS----------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-------------
T ss_pred hh---hhhhcccccCC---------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-------------
Confidence 11 11222222111 011222358999999999999999988899875 58999986
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK 246 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~ 246 (514)
+.+....|.+.+|.++.||. |.|+|.+
T Consensus 124 ------e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 124 ------ENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp ------CTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred ------cCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 23466779999999999999 9999993
No 99
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.01 E-value=2e-09 Score=112.47 Aligned_cols=60 Identities=18% Similarity=0.092 Sum_probs=50.2
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
..++...+...|.+.+++.| ++|+.+++|++++. ++.+.|++.+| ++.||. |.|+|
T Consensus 178 g~i~P~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~---------------------~~~~~v~t~~g-~v~A~~VV~Atg 234 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELG-VEIHENTPMTGLEE---------------------GQPAVVRTPDG-QVTADKVVLALN 234 (460)
T ss_pred eEECHHHHHHHHHHHHHHcC-CEEECCCeEEEEee---------------------CCceEEEeCCc-EEECCEEEEccc
Confidence 46788999999999999988 99999999999964 23456777777 599999 99999
Q ss_pred CCch
Q 010225 245 GKSR 248 (514)
Q Consensus 245 ~~S~ 248 (514)
.++.
T Consensus 235 a~s~ 238 (460)
T TIGR03329 235 AWMA 238 (460)
T ss_pred cccc
Confidence 9864
No 100
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.00 E-value=3.8e-08 Score=93.21 Aligned_cols=201 Identities=15% Similarity=0.111 Sum_probs=108.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC-----CCCCCCCCCceEEeChhhHHHHHH----
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF-----IKKEDPPDPRVSTVTPATISFFKE---- 123 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~l~~---- 123 (514)
+...||+|||||..|++.|+.|++.....|++|+|+|+++...+.+. ...++...+..+.++--+.++|+.
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~eh 163 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREH 163 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHh
Confidence 34679999999999999999998754446899999999997764431 011122223333344444455543
Q ss_pred cCCcHHHH-hhhccCcceEEEEeCCC---------------ccee---------eeccCCC--------CCcccEEEEeh
Q 010225 124 IGAWQYVQ-QHRHAYFDKMQVWDYTG---------------LGYT---------KYNARDV--------NKEILGCVVEN 170 (514)
Q Consensus 124 lgl~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~---------~~~~~~~--------~~~~~~~~i~r 170 (514)
+|+.+.-. ...+.+-..+....... .+.. .|+.-.. +-... -+++.
T Consensus 164 l~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~E-Gwfdp 242 (509)
T KOG2853|consen 164 LGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKE-GWFDP 242 (509)
T ss_pred hccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccc-cccCH
Confidence 33211100 00111111111111000 0000 0000000 00111 24677
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCc
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKS 247 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S 247 (514)
-.|...+++.+..+| +.+.-| +|++++...+.++....-+....--...-.++.|+..|+. +++|++ |.|.|+||
T Consensus 243 w~LLs~~rrk~~~lG-v~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s 320 (509)
T KOG2853|consen 243 WALLSGIRRKAITLG-VQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWS 320 (509)
T ss_pred HHHHHHHHHHhhhhc-ceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccH
Confidence 788889999999998 887666 8999988544432222211100000001134667766664 699999 99999999
Q ss_pred h-hhhhhCCC
Q 010225 248 R-VRELAGFK 256 (514)
Q Consensus 248 ~-vR~~l~~~ 256 (514)
- |.+..|+.
T Consensus 321 ~QvArlAgIG 330 (509)
T KOG2853|consen 321 GQVARLAGIG 330 (509)
T ss_pred HHHHHHhccC
Confidence 6 45555554
No 101
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.99 E-value=1.8e-09 Score=109.66 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=46.3
Q ss_pred EEEehHHHHHHHHHHHhcC-CCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEec
Q 010225 166 CVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGAD 243 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~-g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~Ad 243 (514)
..++...+...|.+.+.+. | ++++.+++|++++. . .|.+.+|. +.||. |.|+
T Consensus 140 g~v~p~~~~~~l~~~~~~~~G-v~i~~~t~V~~i~~----------------------~--~v~t~~g~-i~a~~VV~A~ 193 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHG-VEFHWNTAVTSVET----------------------G--TVRTSRGD-VHADQVFVCP 193 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCC-CEEEeCCeEEEEec----------------------C--eEEeCCCc-EEeCEEEECC
Confidence 4578888999999988765 6 99999999999964 2 56666665 78999 9999
Q ss_pred CCCch
Q 010225 244 GGKSR 248 (514)
Q Consensus 244 G~~S~ 248 (514)
|.+|.
T Consensus 194 G~~s~ 198 (365)
T TIGR03364 194 GADFE 198 (365)
T ss_pred CCChh
Confidence 99874
No 102
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=2.3e-09 Score=109.30 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHc--CCcHHH
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEI--GAWQYV 130 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~ 130 (514)
++..+|+||||||+||++|..|.+. |+.|+|+||.+.++..+-+..... .... .+.+.+ .+..++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~----g~~v~vfEr~~~iGGlW~y~~~~~-------~~~s--s~Y~~l~tn~pKe~ 70 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE----GHEVVVFERTDDIGGLWKYTENVE-------VVHS--SVYKSLRTNLPKEM 70 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC----CCCceEEEecCCccceEeecCccc-------cccc--chhhhhhccCChhh
Confidence 4567999999999999999999997 999999999998853321110000 0000 111111 111111
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCCCCCccc
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
. ....+ ........+..++.++.++|.+.+++.+ ...|.++++|..++.
T Consensus 71 ~------------------~~~df---pf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--------- 120 (448)
T KOG1399|consen 71 M------------------GYSDF---PFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS--------- 120 (448)
T ss_pred h------------------cCCCC---CCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee---------
Confidence 1 00111 1112223455677899999999999876 347899999999976
Q ss_pred CCCCccccccccC-CeeEEEeCCC----cEEEeeE-EEecCCCc
Q 010225 210 DSTPSATTLFTKG-HLAKLDLSDG----TSLYAKL-VGADGGKS 247 (514)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~v~~~~g----~~~~ad~-V~AdG~~S 247 (514)
.. +.|.|.+.++ ....+|. |.|+|.+.
T Consensus 121 -----------~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 121 -----------IDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred -----------ccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 33 5788877654 3678999 99999983
No 103
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.98 E-value=2.6e-07 Score=96.53 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=45.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCCCCCCCCCCC-CCCCCce----EEeChhhHHHHHHcCCcH
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNFIKKE-DPPDPRV----STVTPATISFFKEIGAWQ 128 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~l~~lgl~~ 128 (514)
+|+|||||++||++|+.|++. | ++|+|+|+++.++........ +.....| ..-.++..++++++|+.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~----G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 76 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK----GPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED 76 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh----CCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc
Confidence 699999999999999999996 6 899999999987643221100 0000011 112345677888888753
No 104
>PRK07233 hypothetical protein; Provisional
Probab=98.97 E-value=1.9e-07 Score=96.97 Aligned_cols=67 Identities=27% Similarity=0.384 Sum_probs=46.4
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC-CCCCCce----EEeChhhHHHHHHcCCc
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DPPDPRV----STVTPATISFFKEIGAW 127 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~l~~lgl~ 127 (514)
+|+|||||++||++|+.|++. |++|+|+|+.+.++........ +.....+ ..-.+...++++++|+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~ 72 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR----GHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLE 72 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCC
Confidence 599999999999999999996 9999999999988754321111 1110011 11235667778888764
No 105
>PLN02612 phytoene desaturase
Probab=98.94 E-value=8.6e-07 Score=94.80 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCce----EEeChhhHHHHHHcCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGA 126 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~l~~lgl 126 (514)
..+.+|+|||||++||++|+.|+++ |++|+|+|+.+.++....... .+.....| ....++..++|+++|+
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~----g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~ 166 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADA----GHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGI 166 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCC
Confidence 3467999999999999999999996 999999999887654332111 11111111 1234677888999987
Q ss_pred cHH
Q 010225 127 WQY 129 (514)
Q Consensus 127 ~~~ 129 (514)
.+.
T Consensus 167 ~~~ 169 (567)
T PLN02612 167 NDR 169 (567)
T ss_pred ccc
Confidence 544
No 106
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.94 E-value=3.6e-09 Score=108.32 Aligned_cols=155 Identities=20% Similarity=0.281 Sum_probs=84.6
Q ss_pred EEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChh-hHHHHHHcCCcHHHHhhhccC
Q 010225 59 AVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIGAWQYVQQHRHAY 137 (514)
Q Consensus 59 vIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~lgl~~~~~~~~~~~ 137 (514)
+|||||++|+++|+.|++. |++|+|+||++.++.+... ...++....+.. ...+++.++-...+.......
T Consensus 1 vIIGgG~aGl~aAi~aa~~----G~~V~llEk~~~~G~k~~~----sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~ 72 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE----GLSVLLLEKNKKIGKKLLI----SGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR 72 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc----CCcEEEEecCccccccccc----cCCceEEccCCCcchhHHHhcCCCcHHHHHHHHh
Confidence 6999999999999999996 9999999999876532110 011111111100 111112221101110000000
Q ss_pred c---ceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 138 F---DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 138 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
+ +.+.++...+...... . ....+...-....+.+.|.+.+++.+ ++++++++|++++.
T Consensus 73 ~~~~d~~~~~~~~Gv~~~~~---~-~g~~~p~~~~a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~-------------- 133 (400)
T TIGR00275 73 FSNKDLIDFFESLGLELKVE---E-DGRVFPCSDSAADVLDALLNELKELG-VEILTNSKVKSIKK-------------- 133 (400)
T ss_pred CCHHHHHHHHHHcCCeeEEe---c-CCEeECCCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence 0 0000011111100000 0 00000001135778899999998887 99999999999976
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
.++.+.+.. ++.++.||. |.|+|.+|
T Consensus 134 ------~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 134 ------DDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred ------cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 334566666 456799999 99999987
No 107
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.94 E-value=3.1e-07 Score=97.34 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
..+.+.|.+.+++.| ++|+++++|++|.. +++..+.|.+.+|+++.||. |.|.+....+
T Consensus 219 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~-------------------~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLG-GELRLNAEVIRIET-------------------EGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCeEEEEEe-------------------eCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 667888899998887 89999999999986 12244678888898899999 9988877766
Q ss_pred hhhh
Q 010225 250 RELA 253 (514)
Q Consensus 250 R~~l 253 (514)
...+
T Consensus 279 ~~l~ 282 (502)
T TIGR02734 279 RRLL 282 (502)
T ss_pred HHhc
Confidence 6555
No 108
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.93 E-value=3.3e-07 Score=96.81 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
..+.+.|.+.+++.| ++|+++++|++|.. +.+....|++.+|.+++||. |.|.|.+..+
T Consensus 229 ~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 229 GQIAESLVKGLEKHG-GQIRYRARVTKIIL-------------------ENGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCeeeEEEe-------------------cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 668888999999988 89999999999976 12355678888898899999 9999999888
Q ss_pred hhhhC
Q 010225 250 RELAG 254 (514)
Q Consensus 250 R~~l~ 254 (514)
++.+.
T Consensus 289 ~~Ll~ 293 (493)
T TIGR02730 289 GKLLK 293 (493)
T ss_pred HHhCC
Confidence 77764
No 109
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.90 E-value=1.2e-08 Score=100.41 Aligned_cols=112 Identities=23% Similarity=0.350 Sum_probs=78.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
|||+|||||++|+++|..|++. |++|+|||+.+ ++ + .+...
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g-~~~~~------------------- 41 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA----NLKTLIIEGME-PG--------------G-QLTTT------------------- 41 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC----CCCEEEEeccC-CC--------------c-ceeec-------------------
Confidence 6999999999999999999996 99999999886 21 0 00000
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
..+..+ .+ +. ..+....+...+.+.+++.+ +++++ .+|++++.
T Consensus 42 ---~~~~~~--~~-----~~----------~~~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~--------------- 84 (300)
T TIGR01292 42 ---TEVENY--PG-----FP----------EGISGPELMEKMKEQAVKFG-AEIIY-EEVIKVDL--------------- 84 (300)
T ss_pred ---cccccc--CC-----CC----------CCCChHHHHHHHHHHHHHcC-CeEEE-EEEEEEEe---------------
Confidence 000000 00 00 01233567788888888887 89988 79999976
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
.++.+.+...++.++.+|. |.|+|....
T Consensus 85 -----~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 85 -----SDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred -----cCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 3356777777888899999 999998643
No 110
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.88 E-value=1.8e-08 Score=105.62 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=33.9
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..++||||||||++|+++|+.|++. |.+|+||||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREA----GASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence 4568999999999999999999996 999999999874
No 111
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.4e-08 Score=104.89 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=38.4
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCC
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSN 98 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~ 98 (514)
+.+..+||+|||||++|+++|+.|.++ |.. ++||||++..+..+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~----g~~~~~i~Ek~~~~Gg~W 48 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQA----GVPDFVIFEKRDDVGGTW 48 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHc----CCCcEEEEEccCCcCCcc
Confidence 345678999999999999999999997 888 99999999885443
No 112
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.85 E-value=3.1e-08 Score=104.64 Aligned_cols=40 Identities=30% Similarity=0.566 Sum_probs=35.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
...++||||||+|++|+++|+.+++. |.+|+||||.+..+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~----Ga~VivlEK~~~~G 97 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDA----GMNPVILEKMPVAG 97 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC
Confidence 34578999999999999999999996 99999999998764
No 113
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.84 E-value=4.9e-08 Score=103.79 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+.++||+|||+|+|||++|+.+++. |.+|+|+||....+
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~----G~~VilleK~~~~~ 52 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA----GRRVLVVTKAALDD 52 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc----CCeEEEEEccCCCC
Confidence 35679999999999999999999996 99999999998654
No 114
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.84 E-value=2.6e-08 Score=105.64 Aligned_cols=113 Identities=26% Similarity=0.400 Sum_probs=82.5
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...+||+||||||+|+++|..|++. |++|+|+|+. ++ ..+.. ..+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~----G~~v~li~~~--~G---------------G~~~~-------~~~------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK----GIRTGIVAER--FG---------------GQVLD-------TMG------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC---------------Ceeec-------cCc-------
Confidence 4569999999999999999999996 9999999754 21 00000 000
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
+. +..+ +. .....++...|.+.+++.+ ++++++++|+++..
T Consensus 254 -----~~-----~~~~-----~~-----------~~~~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~------------ 294 (517)
T PRK15317 254 -----IE-----NFIS-----VP-----------ETEGPKLAAALEEHVKEYD-VDIMNLQRASKLEP------------ 294 (517)
T ss_pred -----cc-----ccCC-----CC-----------CCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe------------
Confidence 00 0000 00 1234678889999999887 99999999999976
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
.++.+.|.+.+|.++.+|. |.|+|..+
T Consensus 295 --------~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 295 --------AAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred --------cCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 3356777788888899999 99999966
No 115
>PLN02576 protoporphyrinogen oxidase
Probab=98.83 E-value=1.6e-06 Score=91.86 Aligned_cols=41 Identities=37% Similarity=0.558 Sum_probs=35.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
..+||+|||||++||++|+.|++. .|++|+|+|+++.++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~---~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASK---HGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHh---cCCCEEEEecCCCCCCc
Confidence 456999999999999999999994 17999999999988644
No 116
>PLN02568 polyamine oxidase
Probab=98.81 E-value=1.5e-06 Score=91.90 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=36.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCC-CCCcEEEEEcCCCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPL-TKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~-~~g~~V~viE~~~~~~~~ 97 (514)
+++..||+|||||++||++|+.|++.+. .+|++|+|+|++..++..
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 3456799999999999999999998610 123999999999987644
No 117
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.80 E-value=4.4e-08 Score=102.70 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=94.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCceEEeChhhHHHHHHcC-CcHHHHhh
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQQH 133 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~~~ 133 (514)
|||+|||||++|+.+|..+++. |.+|+|+|++... +..+|.. ...+.+.+. ..+-++.+| ....+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~----G~~v~Lie~~~~~~g~~~c~p---s~gG~a~g~---l~rEidaLGG~~~~~~d~ 70 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM----GAKTLLLTLNLDTIGKCSCNP---AIGGPAKGI---LVKEIDALGGLMGKAADK 70 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC----CCCEEEEecccccccCCCccc---cccccccch---hhhhhhcccchHHHHHHh
Confidence 6999999999999999999996 9999999997532 2222210 000001111 112233333 11222111
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
.. ..+...+...... .......+++..+...+.+.+++.++++++.+ .|+++...
T Consensus 71 ~~---i~~r~ln~skgpA---------V~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e------------ 125 (617)
T TIGR00136 71 AG---LQFRVLNSSKGPA---------VRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILE------------ 125 (617)
T ss_pred hc---eeheecccCCCCc---------ccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEe------------
Confidence 11 1111111111000 00111367899999999999999877888766 78888650
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
+++....|.+.+|..+.|+. |.|+|.+..-+-.+
T Consensus 126 ------~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 126 ------DNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred ------cCCcEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence 02355678888888999999 99999997544333
No 118
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.80 E-value=2.5e-08 Score=103.82 Aligned_cols=35 Identities=34% Similarity=0.625 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALG 95 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~~ 95 (514)
||||||||++|+++|+.+++. | .+|+||||.+..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~----G~~~V~vlEk~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA----GAANVVLLEKMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc----CCccEEEEecCCCCC
Confidence 899999999999999999996 9 9999999998654
No 119
>PLN02268 probable polyamine oxidase
Probab=98.78 E-value=3.2e-06 Score=87.90 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=46.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCC-CC-CCCceEEe-----ChhhHHHHHHcCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DP-PDPRVSTV-----TPATISFFKEIGA 126 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~-~~-~~~~~~~l-----~~~~~~~l~~lgl 126 (514)
.+|+|||||++||++|+.|.+. |++|+|+|+++.++.+.+.... .. ....+..+ .+...++++++|+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~----g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl 74 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA----SFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGL 74 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCC
Confidence 3799999999999999999996 9999999999998866543211 11 11112222 2224567788887
No 120
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.75 E-value=1.3e-07 Score=99.52 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC-C--cEEEeeE-EEecCC
Q 010225 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-G--TSLYAKL-VGADGG 245 (514)
Q Consensus 170 r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g--~~~~ad~-V~AdG~ 245 (514)
-..+...|.+.+++..+++|+++++|+++.. +++....+...+ + ..+.|+. |.|+|.
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-------------------~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG 187 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLI-------------------ETGRVVGVWVWNRETVETCHADAVVLATGG 187 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeec-------------------cCCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence 3578899999998754599999999999976 111223233322 2 3689999 999999
Q ss_pred Cchhhh
Q 010225 246 KSRVRE 251 (514)
Q Consensus 246 ~S~vR~ 251 (514)
+|.+..
T Consensus 188 ~~~~~~ 193 (488)
T TIGR00551 188 AGKLYQ 193 (488)
T ss_pred ccCCCC
Confidence 998654
No 121
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.75 E-value=5.2e-08 Score=98.03 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=80.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHH-HHhhh
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY-VQQHR 134 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~-~~~~~ 134 (514)
.||+|||||++|+.+|+.|++. |++|+|||+++....... .......+....+..+...+...|+|.. +...+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~----Gl~V~LiE~rp~~~s~a~--~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lg 76 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR----GVPVELYEMRPVKKTPAH--HTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLG 76 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccCcccc--cCccccccccchhhhhhhHHhcCCchHHHHHHhc
Confidence 5899999999999999999996 999999998876532110 0011223445566667777888898863 33221
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCccc-EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEIL-GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA 199 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~ 199 (514)
. +.+...+ ....... ...++|..+.+.|.+.+++.++++++ ..+|+++.
T Consensus 77 s-----l~~~aad----------~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 77 S-----LIMEAAD----------AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred c-----hheeccc----------ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 1 1111100 0011111 24688999999999999998889988 45888773
No 122
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.74 E-value=7.2e-08 Score=102.11 Aligned_cols=113 Identities=26% Similarity=0.328 Sum_probs=80.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...+||+||||||+|+++|+.|++. |++|+|||.. ++ | .+. . ..+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~----G~~v~li~~~--~G--------------G-~~~-~------~~~------- 254 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK----GLRTAMVAER--IG--------------G-QVK-D------TVG------- 254 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC--------------C-ccc-c------CcC-------
Confidence 4569999999999999999999996 9999999742 21 0 000 0 000
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
+..+ . + .. ......+...+.+.+++.+ ++++.+++|++++.
T Consensus 255 -----~~~~--~---~-------------~~---~~~~~~l~~~l~~~l~~~g-v~i~~~~~V~~I~~------------ 295 (515)
T TIGR03140 255 -----IENL--I---S-------------VP---YTTGSQLAANLEEHIKQYP-IDLMENQRAKKIET------------ 295 (515)
T ss_pred -----cccc--c---c-------------cC---CCCHHHHHHHHHHHHHHhC-CeEEcCCEEEEEEe------------
Confidence 0000 0 0 00 0234567788888888876 99999999999976
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
.++.+.+.+.+|.++.+|. |.|+|...
T Consensus 296 --------~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 296 --------EDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred --------cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 3345777778888899999 99999864
No 123
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8.7e-08 Score=93.45 Aligned_cols=114 Identities=24% Similarity=0.286 Sum_probs=77.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
+.+||+||||||+||++|+.++++ +++ ++|+|+...-+ .+. .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~----~l~~~li~~~~~~gg----------------~~~-----------~------ 44 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA----GLKVVLILEGGEPGG----------------QLT-----------K------ 44 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc----CCCcEEEEecCCcCC----------------ccc-----------c------
Confidence 468999999999999999999997 888 66666654210 000 0
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
.. .+-+.. ..+ -.+.-..|.+.+.+.+...+ +++.. ..|..++.
T Consensus 45 -----~~--~venyp-------------g~~--~~~~g~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~------------ 88 (305)
T COG0492 45 -----TT--DVENYP-------------GFP--GGILGPELMEQMKEQAEKFG-VEIVE-DEVEKVEL------------ 88 (305)
T ss_pred -----ce--eecCCC-------------CCc--cCCchHHHHHHHHHHHhhcC-eEEEE-EEEEEEee------------
Confidence 00 000000 000 01345678888888888777 88777 57777765
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++...|.+.++. ++|+. |.|+|....-
T Consensus 89 --------~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 89 --------EGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred --------cCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 2227888888888 99999 9999986654
No 124
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.74 E-value=1.3e-07 Score=94.39 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=58.6
Q ss_pred EEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCC---C--cEEEeeE
Q 010225 165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL 239 (514)
Q Consensus 165 ~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~ 239 (514)
|.-++-..|.+.|.+.+.+.++++++++++|++|.+ ..++.|.|...| | .++.|++
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r-------------------~~dg~W~v~~~~~~~~~~~~v~a~F 235 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR-------------------NGDGRWEVKVKDLKTGEKREVRAKF 235 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE-------------------CCCCCEEEEEEecCCCCeEEEECCE
Confidence 356788999999999999886699999999999988 133557776532 2 4799999
Q ss_pred --EEecCCCchhhhhhCCC----ccCCCCCceEEEE
Q 010225 240 --VGADGGKSRVRELAGFK----TTGWSYSQNAIIC 269 (514)
Q Consensus 240 --V~AdG~~S~vR~~l~~~----~~~~~~~~~~~~~ 269 (514)
|||-|..=++-...|++ +-+++.+-.++.+
T Consensus 236 VfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~ 271 (488)
T PF06039_consen 236 VFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRC 271 (488)
T ss_pred EEECCchHhHHHHHHcCChhhcccCCCcccceEEec
Confidence 55555444555555542 3333444444444
No 125
>PRK07121 hypothetical protein; Validated
Probab=98.72 E-value=1.3e-07 Score=99.84 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=35.6
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
+.++||||||+|.+|+++|+.+++. |.+|+||||.+..+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~----G~~VillEK~~~~g 56 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAA----GARVLVLERAAGAG 56 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCCCC
Confidence 4579999999999999999999996 99999999998754
No 126
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.71 E-value=1.5e-06 Score=88.46 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=49.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCCCCCCCC-CCCCCC---CCceEEeC-hhhHHHHHHcCCcHH
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNFI-KKEDPP---DPRVSTVT-PATISFFKEIGAWQY 129 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~~~~~~~-~~~~~~---~~~~~~l~-~~~~~~l~~lgl~~~ 129 (514)
.|+|||||++||++|+.|++. + ..|+|||+++..+..-.. ...... .+...... +..++.++++|+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~ 77 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDK 77 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHh
Confidence 599999999999999999997 6 899999999877522110 000000 01112223 667788899999887
Q ss_pred HH
Q 010225 130 VQ 131 (514)
Q Consensus 130 ~~ 131 (514)
+.
T Consensus 78 l~ 79 (444)
T COG1232 78 LL 79 (444)
T ss_pred hc
Confidence 77
No 127
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.71 E-value=7.7e-08 Score=101.30 Aligned_cols=146 Identities=17% Similarity=0.164 Sum_probs=83.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||++||++|..|.+. |++|++|||.+.++..+.+... ...+++ .+++.+.-+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~----g~~~~~fE~~~~iGG~W~~~~~-~~~g~~--------------~~y~sl~~n-- 60 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE----GLEVTCFEKSDDIGGLWRYTEN-PEDGRS--------------SVYDSLHTN-- 60 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT----T-EEEEEESSSSSSGGGCHSTT-CCCSEG--------------GGSTT-B-S--
T ss_pred CEEEEECccHHHHHHHHHHHHC----CCCCeEEecCCCCCccCeeCCc-CCCCcc--------------ccccceEEe--
Confidence 4799999999999999999996 9999999999988533321110 000000 001111000
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCC-CceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
.......|..-..+...+ -..++.++.++|.+.+++.+ .-.|+++++|+++++ ..|.
T Consensus 61 -----------~sk~~~~fsdfp~p~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~---------~~d~- 118 (531)
T PF00743_consen 61 -----------TSKEMMAFSDFPFPEDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVER---------DPDF- 118 (531)
T ss_dssp -----------S-GGGSCCTTS-HCCCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEE---------ETTT-
T ss_pred -----------eCchHhcCCCcCCCCCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeee---------cccc-
Confidence 000000011000011111 13578999999999999875 136899999999987 1111
Q ss_pred cccccccCCeeEEEeCC-Cc--EEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSD-GT--SLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~-g~--~~~ad~-V~AdG~~S~v 249 (514)
...+.|.|+..+ |+ +-.+|. |.|+|.++.-
T Consensus 119 -----~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 119 -----SATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp -----T-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred -----CCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 023568887754 43 456899 9999998743
No 128
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.71 E-value=6.6e-08 Score=104.19 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=35.0
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..++||+|||+|+|||++|+.+++. |.+|+|+||....+
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~----G~~VilveK~~~~~ 86 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFPTR 86 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhc----CCcEEEEEcCCCCC
Confidence 3568999999999999999999996 99999999987654
No 129
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.70 E-value=1.7e-07 Score=100.41 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.++||+|||||+|||++|+.+++.+ .|.+|+|+||....+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g--~g~~V~lleK~~~~~ 42 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEAN--PNLKIALISKVYPMR 42 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhC--CCCcEEEEEccCCCC
Confidence 4689999999999999999999752 258999999987654
No 130
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.70 E-value=8.2e-08 Score=99.28 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=43.2
Q ss_pred ehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeC---CCc--EEEeeE-EEe
Q 010225 169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKL-VGA 242 (514)
Q Consensus 169 ~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~g~--~~~ad~-V~A 242 (514)
.-..+...|.+.+++.+ ++|+++++++++.. +.+..+.+... +|+ ++.|+. |.|
T Consensus 139 ~g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~-------------------e~g~V~Gv~~~~~~~g~~~~i~A~aVIlA 198 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAG-VDIRFNTRVTDLIT-------------------EDGRVTGVVAENPADGEFVRIKAKAVILA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEESEEEEEEEE-------------------ETTEEEEEEEEETTTCEEEEEEESEEEE-
T ss_pred cHHHHHHHHHHHHhhcC-eeeeccceeeeEEE-------------------eCCceeEEEEEECCCCeEEEEeeeEEEec
Confidence 45778999999999998 99999999999987 12233444443 455 588999 999
Q ss_pred cCCCch
Q 010225 243 DGGKSR 248 (514)
Q Consensus 243 dG~~S~ 248 (514)
+|..+.
T Consensus 199 tGG~~~ 204 (417)
T PF00890_consen 199 TGGFGG 204 (417)
T ss_dssp ---BGG
T ss_pred cCcccc
Confidence 999985
No 131
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.70 E-value=3.3e-07 Score=98.05 Aligned_cols=41 Identities=34% Similarity=0.464 Sum_probs=34.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
.++||+|||||+|||++|+.+++.+ .|.+|+|+||....+.
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g--~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEAN--PHLDVALISKVYPMRS 42 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhC--CCCcEEEEEccCCCCC
Confidence 3589999999999999999999742 2689999999986543
No 132
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.68 E-value=5.8e-06 Score=86.49 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=49.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCce----EEeChhhHHHHHHcCCcHH
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGAWQY 129 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~l~~lgl~~~ 129 (514)
+|+|||||++||++|+.|++. |++|+|+|+.+.++...+... .+.....| ....++..++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA----GHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 589999999999999999996 999999999998765443211 11111112 1224778899999997543
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.68 E-value=1.9e-07 Score=99.74 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=76.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
..|||+||||||||+++|+.|++. |++|+|||++... |......
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~----g~~V~liE~~~~G---------------G~~~~~~----------------- 46 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA----KLDTLIIEKDDFG---------------GQITITS----------------- 46 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCC---------------ceEEecc-----------------
Confidence 459999999999999999999996 9999999986421 1100000
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
.+ .+..+. ..+....+...+.+.+++.+ ++++ +++|+++..
T Consensus 47 ---~i-----~~~pg~----------------~~~~~~~l~~~l~~~~~~~g-v~~~-~~~V~~i~~------------- 87 (555)
T TIGR03143 47 ---EV-----VNYPGI----------------LNTTGPELMQEMRQQAQDFG-VKFL-QAEVLDVDF------------- 87 (555)
T ss_pred ---cc-----ccCCCC----------------cCCCHHHHHHHHHHHHHHcC-CEEe-ccEEEEEEe-------------
Confidence 00 000000 01234567778888888777 8875 668888875
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.+....|...++ .+.++. |.|+|.+...
T Consensus 88 -------~~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 88 -------DGDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred -------cCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 234456666555 589999 9999997644
No 134
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=2.4e-07 Score=99.54 Aligned_cols=41 Identities=32% Similarity=0.541 Sum_probs=35.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCC---cEEEEEcCCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKH---LSVAIIDSNPALGK 96 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g---~~V~viE~~~~~~~ 96 (514)
...++||+|||||+|||++|+.+++. | .+|+|+||....+.
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~----G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAER----SGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHh----CCCCCcEEEEEcccCCCC
Confidence 34568999999999999999999996 7 89999999986543
No 135
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.67 E-value=2.1e-07 Score=100.27 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=35.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..++||+|||||.|||++|+.+++. |.+|+|+||....+
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~lveK~~~~~ 65 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVEL----GYKTACISKLFPTR 65 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc----CCcEEEEeccCCCC
Confidence 3578999999999999999999996 99999999987654
No 136
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.67 E-value=1.4e-07 Score=97.63 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=32.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.++||+|||+|.|||++|+.+++ |.+|+||||.+..+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~-----G~~V~lleK~~~~g 39 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRK-----DLKILMVSKGKLNE 39 (433)
T ss_pred ccccEEEECchHHHHHHHHHhcc-----CCCEEEEecCCCCC
Confidence 56899999999999999999853 89999999988653
No 137
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.65 E-value=2.5e-07 Score=99.30 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
||+|||||++|+++|+.+++. |.+|+||||....+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~----G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA----GLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence 899999999999999999996 99999999987643
No 138
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.63 E-value=4.4e-07 Score=95.30 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=36.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
+.+||||||||+.||++|+.|+|+ |++|+|+||+..++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~----G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA----GLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC----CCEEEEEEecCCCCc
Confidence 468999999999999999999997 999999999998864
No 139
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.63 E-value=2.1e-07 Score=82.19 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=76.7
Q ss_pred EEECCCHHHHHHHHHhccCC-CCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhccC
Q 010225 59 AVVGGGMVGMALACSLASMP-LTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY 137 (514)
Q Consensus 59 vIVGgG~aGl~~A~~L~~~~-~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~ 137 (514)
+||||||+|++++..|.+.. .....+|+|||+.+......+. .. ......++- +
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~-~~---~~~~~llN~---------------------~ 55 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYR-PD---QPPSHLLNT---------------------P 55 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCC-CC---CChHHhhcc---------------------c
Confidence 69999999999999999872 2346899999996542111110 00 000111110 1
Q ss_pred cceEEEEeCCC-cceeeeccC----CCCCcccEEEEehHHHHHHHHHHHhcC-----CCceEE-cCCeeEEEeeCCCCCC
Q 010225 138 FDKMQVWDYTG-LGYTKYNAR----DVNKEILGCVVENKVLHSSLLSCMQNT-----EFQKTI-YPSRLTSMALLPSSSS 206 (514)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~-----g~v~v~-~~~~v~~v~~~~~~~~ 206 (514)
...+.++..+. .....+-.. +.......-.++|..+-.+|.+.+.+. .+++|. ...+|+++..
T Consensus 56 a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~------ 129 (156)
T PF13454_consen 56 ADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR------ 129 (156)
T ss_pred ccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE------
Confidence 11111111110 000000000 001111223467877777776554432 112322 3568999987
Q ss_pred cccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC
Q 010225 207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG 245 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~ 245 (514)
.+++..|.+.+|..+.+|. |.|+|.
T Consensus 130 --------------~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 130 --------------DDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred --------------cCCcEEEEECCCCEEEeCEEEECCCC
Confidence 4466788889999999999 999995
No 140
>PLN02676 polyamine oxidase
Probab=98.63 E-value=5.5e-06 Score=86.98 Aligned_cols=42 Identities=24% Similarity=0.459 Sum_probs=36.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSN 98 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~~~~~ 98 (514)
...+||+|||||++||++|+.|++. |+ +|+|+|++..++...
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~----g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEA----GIEDILILEATDRIGGRM 66 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHc----CCCcEEEecCCCCCCCcc
Confidence 3467999999999999999999996 87 699999999876543
No 141
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=2.3e-07 Score=99.53 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.++||+|||||+|||++|+.+++.+ .|.+|+|+||....+
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~V~vleK~~~~g 41 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLD--PSLDVAVVAKTHPIR 41 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhc--CCCcEEEEeccCCCc
Confidence 4579999999999999999999752 258999999987654
No 142
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.63 E-value=1.5e-07 Score=98.47 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
..+.+.|.+.+++.+ ++++++ .++.+.. +++..+.+.. ++..+.++. |.|+|.+|.+
T Consensus 120 ~~i~~~L~~~~~~~g-v~i~~~-~v~~l~~-------------------~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 120 KHIIKILYKHARELG-VNFIRG-FAEELAI-------------------KNGKAYGVFL-DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHHHHHHhcC-CEEEEe-EeEEEEe-------------------eCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence 568888999998876 898876 7888865 1223334544 566799999 9999999987
Q ss_pred hh
Q 010225 250 RE 251 (514)
Q Consensus 250 R~ 251 (514)
..
T Consensus 178 ~~ 179 (466)
T PRK08401 178 FK 179 (466)
T ss_pred CC
Confidence 53
No 143
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=87.27 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=93.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCC-CCC-cEEEEEcCCCCCCCCCCCCCCCC-CCCc---eEEeChhhHHHHHHcCCcH
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPL-TKH-LSVAIIDSNPALGKSNFIKKEDP-PDPR---VSTVTPATISFFKEIGAWQ 128 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~-~~g-~~V~viE~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~l~~lgl~~ 128 (514)
..+|+|||||+.|.++||.|++++- ++| +.|+|||+....+..+-...... .... ...|.+-+.++.+. |.+
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~--Lsd 87 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEE--LSD 87 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHH--HHH
Confidence 4789999999999999999999831 122 78999999987653321000000 0000 01222223333222 222
Q ss_pred HHHhhhccCcceEEEEe------CCCcceee----eccC-------CCCCcccEEEEehHHHHHHHHHHHhcCCCceEEc
Q 010225 129 YVQQHRHAYFDKMQVWD------YTGLGYTK----YNAR-------DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIY 191 (514)
Q Consensus 129 ~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~-------~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~ 191 (514)
++.......+..+.-|. .......+ +-.. .++......+++...|.+.+++.+++.++|++.+
T Consensus 88 eydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~ 167 (380)
T KOG2852|consen 88 EYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVF 167 (380)
T ss_pred hhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEE
Confidence 33222111222222221 11111100 0000 1122233367999999999999999999999999
Q ss_pred CCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 192 PSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 192 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
| +|.++.. |....+++...+.. ......+.+. |.+.|.|+.
T Consensus 168 G-kv~ev~d-Ek~r~n~v~~ae~~--------------~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 168 G-KVKEVSD-EKHRINSVPKAEAE--------------DTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred e-eeEEeec-ccccccccchhhhc--------------CceEEeeeeEEEEecCCCch
Confidence 9 6888852 22222222111100 0123467788 999999975
No 144
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.62 E-value=3.1e-07 Score=95.68 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=31.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|||+||||||+|+++|+.+++. |++|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH----GAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCc
Confidence 58999999999999999999996 99999999853
No 145
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.62 E-value=2.2e-06 Score=88.22 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=55.4
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
-.++...+++.|...+++.| +.|+.++.|++|.. ..++.+.|.+.-|. ++|.. |+|+|
T Consensus 182 G~~DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~-------------------~~~~~~gVeT~~G~-iet~~~VNaaG 240 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALG-ALVIENCPVTGLHV-------------------ETDKFGGVETPHGS-IETECVVNAAG 240 (856)
T ss_pred cccCHHHHHHHHHHHHHhcC-cEEEecCCcceEEe-------------------ecCCccceeccCcc-eecceEEechh
Confidence 35789999999999999999 99999999999976 12344577777776 99999 99999
Q ss_pred CCchhhh-hhCCC
Q 010225 245 GKSRVRE-LAGFK 256 (514)
Q Consensus 245 ~~S~vR~-~l~~~ 256 (514)
.|.+--. +.+.+
T Consensus 241 vWAr~Vg~m~gvk 253 (856)
T KOG2844|consen 241 VWAREVGAMAGVK 253 (856)
T ss_pred HHHHHhhhhcCCc
Confidence 9985433 33533
No 146
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=6.1e-07 Score=95.99 Aligned_cols=38 Identities=34% Similarity=0.532 Sum_probs=34.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+||+|||+|.||+++|+.+++. |.+|+|+||.+..+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~----G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA----GFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence 568999999999999999999996 99999999987543
No 147
>PLN02487 zeta-carotene desaturase
Probab=98.60 E-value=1.3e-05 Score=85.12 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=51.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCceE----EeChhhHHHHHHcCCc
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVS----TVTPATISFFKEIGAW 127 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~--~~~~~~~~~~~~----~l~~~~~~~l~~lgl~ 127 (514)
+..+|+|||||++||++|+.|++. |++|+|+|+.+.++.... ..........|. ...++..++++++|+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~----g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~ 149 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGAD 149 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC----CCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCc
Confidence 346999999999999999999996 999999999998753211 001111111121 2246788889999987
Q ss_pred HHHH
Q 010225 128 QYVQ 131 (514)
Q Consensus 128 ~~~~ 131 (514)
+++.
T Consensus 150 ~~~~ 153 (569)
T PLN02487 150 ENLL 153 (569)
T ss_pred cccc
Confidence 6543
No 148
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.60 E-value=2.2e-07 Score=99.99 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.++||+|||||+|||++|+.+++.+ .|.+|+||||....+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~--~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWA--PDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEECCCcCC
Confidence 4689999999999999999999831 179999999988643
No 149
>PRK14694 putative mercuric reductase; Provisional
Probab=98.59 E-value=4.3e-07 Score=95.24 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.6
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+....|||+||||||+|+++|+.|+++ |++|+|||++.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~----g~~v~lie~~~ 39 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATER----GARVTLIERGT 39 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEEccc
Confidence 445789999999999999999999997 99999999874
No 150
>PLN02976 amine oxidase
Probab=98.59 E-value=8.1e-06 Score=92.16 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=43.3
Q ss_pred cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhcCCCc-chHHHHHHHHHHhhHH
Q 010225 392 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI-GEASLLKKYEAERKPA 453 (514)
Q Consensus 392 ~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~~~~~-~~~~~l~~Y~~~r~~~ 453 (514)
.+++++.|+|.+.-.|- =+.-|++++...|+.|...+..+.++ ....+++.+++.....
T Consensus 1150 ggRLFFAGEATS~~~pG---TVHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~ 1209 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPD---TVGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESE 1209 (1713)
T ss_pred CCcEEEEehhhhCCCcc---hHHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhh
Confidence 46799999997765553 45668999999999999988877553 3467777776654433
No 151
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.56 E-value=3.2e-06 Score=88.59 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCC--cEEEeeE-EEecCCCc
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKL-VGADGGKS 247 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~-V~AdG~~S 247 (514)
..+...+.+.+++.+ ++++++++|++++. .++.+.+.+.+| .++.+|. |.|.|..+
T Consensus 211 ~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKG-VKILTNTKVTAVEK--------------------NDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 456677778888877 99999999999975 334566766667 4799999 99999887
Q ss_pred hhh
Q 010225 248 RVR 250 (514)
Q Consensus 248 ~vR 250 (514)
.+.
T Consensus 270 ~~~ 272 (461)
T TIGR01350 270 NTE 272 (461)
T ss_pred cCC
Confidence 654
No 152
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.56 E-value=5.8e-07 Score=94.39 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=33.0
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|||+||||||+|+++|..|++. |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL----GLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCeEEEEEccC
Confidence 3579999999999999999999997 99999999864
No 153
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.56 E-value=2.4e-07 Score=97.09 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=34.5
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+..|||+||||||+|+++|+.|++. |++|+|||+++.+
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~----G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKL----GKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCEEEEEeccccc
Confidence 4569999999999999999999997 9999999997655
No 154
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=4.3e-07 Score=98.26 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=33.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.++||+|||||.|||++|+.+++. |.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~----G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL----GYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEecCCCC
Confidence 468999999999999999999996 9999999997655
No 155
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.55 E-value=9.2e-07 Score=94.49 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=33.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.++||+|||+|.+||++|+.+++. |.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~----G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA----GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 578999999999999999999997 99999999998
No 156
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.55 E-value=1.1e-06 Score=94.47 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=34.5
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
...+||+|||||+|||++|+.+++. |.+|+||||....+
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~vleK~~~~~ 48 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARA----GLSVAVLSKVFPTR 48 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence 4568999999999999999999996 99999999986543
No 157
>PRK08275 putative oxidoreductase; Provisional
Probab=98.54 E-value=9.1e-07 Score=94.59 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=33.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..+||+|||||+||+++|+.+++.+ .|.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERN--PALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC
Confidence 5689999999999999999999742 26899999999864
No 158
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.54 E-value=7.7e-07 Score=95.06 Aligned_cols=39 Identities=36% Similarity=0.581 Sum_probs=35.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.+.++||+|||+|++|+++|+.+++. |.+|+||||.+..
T Consensus 4 ~~~~~DvvVvG~G~aG~~aA~~aa~~----G~~v~llEk~~~~ 42 (557)
T PRK07843 4 TVQEYDVVVVGSGAAGMVAALTAAHR----GLSTVVVEKAPHY 42 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence 44579999999999999999999997 9999999998765
No 159
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.53 E-value=5.7e-07 Score=96.57 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=36.6
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+.++||||||+|++|+++|+.+++. |.+|+|+||....+
T Consensus 5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~----G~~v~llEk~~~~g 45 (574)
T PRK12842 5 TNELTCDVLVIGSGAGGLSAAITARKL----GLDVVVLEKEPVFG 45 (574)
T ss_pred CcCCCCCEEEECcCHHHHHHHHHHHHc----CCeEEEEecCCCCC
Confidence 345679999999999999999999996 99999999998764
No 160
>PRK12839 hypothetical protein; Provisional
Probab=98.53 E-value=1.4e-06 Score=93.19 Aligned_cols=41 Identities=29% Similarity=0.445 Sum_probs=36.4
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
+.+..+||+|||+|++|+++|+.|++. |.+|+||||....+
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~----g~~v~~iek~~~~g 44 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYG----GAKVLVVEKASTCG 44 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 345679999999999999999999996 99999999987654
No 161
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.52 E-value=8e-07 Score=95.37 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=34.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.++||+|||+|.|||++|+.+++. |.+|+|+||....+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS----GQSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence 368999999999999999999996 99999999987653
No 162
>PRK09897 hypothetical protein; Provisional
Probab=98.51 E-value=2.2e-07 Score=97.45 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
++|+||||||+|+++|..|.+.. ..++|+|||+...++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~--~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQ--TPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcC--CCCcEEEEecCCCCC
Confidence 47999999999999999998752 357899999987664
No 163
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=1.3e-06 Score=93.92 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=33.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..++||+|||||+||+++|+.+++ +.+|+|+||....+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~-----~~~VilleK~~~~~ 40 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGP-----RARTAVLTKLYPTR 40 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHh-----CCCEEEEeCCCCCC
Confidence 356899999999999999999987 48999999987543
No 164
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.51 E-value=9.4e-07 Score=89.64 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.||+|||||++|+.+|+.|++. |++|+|||+++....... ............+..+..+++..|++..-..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~----G~~V~LiE~rp~~~~p~~--~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~--- 71 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA----GVPVILYEMRPEKLTPAH--HTEDLAELVCSNSLGAKALDRAAGLLKTEMR--- 71 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC----CCcEEEEeccccccCchh--hhhhhhhhcccccccchhHHhccCcHHHHHh---
Confidence 4799999999999999999996 999999998876422100 0000001112233444566677776653222
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA 199 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~ 199 (514)
......+...+.. .+ .....+.++|..+.+.+.+.+++.+++++. ..+|+++.
T Consensus 72 -~lg~l~~~~ad~~-~I--------pagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL~ 124 (433)
T TIGR00137 72 -QLSSLIITAADRH-AV--------PAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEIP 124 (433)
T ss_pred -hcCeeeeehhhhh-CC--------CCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEEc
Confidence 1111111111110 00 111245789999999999999988877766 44666663
No 165
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=8.3e-07 Score=92.45 Aligned_cols=35 Identities=31% Similarity=0.555 Sum_probs=32.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
++|||+||||||+|+++|+.|++. |++|+|||+++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~----g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA----GWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC----CCeEEEEcCCC
Confidence 469999999999999999999996 99999999975
No 166
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.51 E-value=1.2e-06 Score=93.13 Aligned_cols=40 Identities=38% Similarity=0.505 Sum_probs=34.6
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+.++||+|||+|.||+++|+.+++ |.+|+|+||.+..+
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~~-----G~~V~lieK~~~~g 44 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLPS-----HLRVGLITKDTLKT 44 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhhc-----CCCEEEEEccCCCC
Confidence 34567899999999999999999864 89999999987653
No 167
>PLN02815 L-aspartate oxidase
Probab=98.51 E-value=2.1e-06 Score=91.81 Aligned_cols=39 Identities=28% Similarity=0.501 Sum_probs=34.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+.++||+|||+|.|||++|+.+++. | +|+|+||....+
T Consensus 26 ~~~~~DVlVVG~G~AGl~AAl~Aae~----G-~VvlleK~~~~g 64 (594)
T PLN02815 26 STKYFDFLVIGSGIAGLRYALEVAEY----G-TVAIITKDEPHE 64 (594)
T ss_pred cccccCEEEECccHHHHHHHHHHhhC----C-CEEEEECCCCCC
Confidence 34568999999999999999999996 8 899999998754
No 168
>PRK06116 glutathione reductase; Validated
Probab=98.50 E-value=5.4e-07 Score=94.09 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=32.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|||+||||||+|+++|+.|++. |++|+|||+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~----G~~V~liE~~~ 37 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY----GAKVALIEAKR 37 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccc
Confidence 469999999999999999999996 99999999863
No 169
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.50 E-value=1.1e-06 Score=92.05 Aligned_cols=35 Identities=37% Similarity=0.535 Sum_probs=32.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..|||+||||||+|+++|..|++. |++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~----G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL----GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC----CCcEEEEeccc
Confidence 469999999999999999999996 99999999876
No 170
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.50 E-value=1.3e-06 Score=67.67 Aligned_cols=34 Identities=38% Similarity=0.694 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~----g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL----GKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----TSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh----CcEEEEEeccchh
Confidence 489999999999999999997 9999999999966
No 171
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.50 E-value=7.1e-07 Score=94.95 Aligned_cols=38 Identities=37% Similarity=0.641 Sum_probs=33.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
+.++||+|||+|+|||++|+.+++ +.+|+|+||....+
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~-----~~~VilveK~~~~~ 43 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAE-----HRRVAVLSKGPLSE 43 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHH-----CCCEEEEeccCCCC
Confidence 456899999999999999999987 47999999988653
No 172
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.49 E-value=7.2e-05 Score=81.80 Aligned_cols=42 Identities=29% Similarity=0.465 Sum_probs=37.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~ 98 (514)
....+|+|||||++|+++|+.|++. |++|+|+|++..++.+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSM----GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeccccCCCcc
Confidence 3567999999999999999999996 99999999998886553
No 173
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=2.1e-06 Score=91.64 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.++||+|||||.||+++|+.+ +. |.+|+|+||...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~----G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER----GKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc----CCCEEEEEccCC
Confidence 468999999999999999999 75 999999999864
No 174
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.48 E-value=9.8e-07 Score=92.48 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=33.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.+|||+||||||+|+++|..|++. |++|+|||+++.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~~~ 39 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL----GLETVCVERYSTL 39 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCcc
Confidence 469999999999999999999996 9999999997644
No 175
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.48 E-value=7.3e-07 Score=95.94 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.++||+|||||+|||++|+.+++. |.+|+|+||....+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~----G~~V~lveK~~~~~ 48 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA----GLKTACITKVFPTR 48 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence 468999999999999999999996 89999999987543
No 176
>PRK06370 mercuric reductase; Validated
Probab=98.47 E-value=5.3e-07 Score=94.49 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
++.+|||+||||||+|+++|+.|++. |++|+|||+..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGL----GMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence 44569999999999999999999997 99999999875
No 177
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.47 E-value=2.1e-06 Score=90.79 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=32.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
++||+|||+|.|||++|+.+++ |.+|+|+||.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-----g~~V~lveK~~~~~ 38 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-----EYNVIIITKKTKRN 38 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-----CCCEEEEeccCCCC
Confidence 6799999999999999999976 78999999998654
No 178
>PRK10262 thioredoxin reductase; Provisional
Probab=98.46 E-value=1.6e-06 Score=86.24 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+..+||+||||||+|+++|..|++. |++|+|||+..
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~----g~~~~~ie~~~ 39 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGME 39 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHC----CCCeEEEEeec
Confidence 34678999999999999999999996 89999999653
No 179
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.45 E-value=1.3e-06 Score=92.52 Aligned_cols=38 Identities=39% Similarity=0.576 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
+.++||||||+| +|+++|+.+++. |.+|+||||.+..+
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~----G~~V~vlEk~~~~G 42 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAARE----GLSVALVEATDKFG 42 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 357899999999 999999999996 99999999998654
No 180
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.45 E-value=6.3e-07 Score=96.91 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=34.8
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..++||+|||||+||+++|+.+++. |.+|+||||....+
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~----G~~V~lieK~~~~~ 44 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARER----GLRVAVVCKSLFGK 44 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHC----CCCEEEEeccCCCC
Confidence 3568999999999999999999996 99999999987553
No 181
>PLN02507 glutathione reductase
Probab=98.45 E-value=1.2e-06 Score=92.46 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~ 90 (514)
..+|||+||||||+|+.+|..|+++ |.+|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~----G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF----GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence 4469999999999999999999997 999999997
No 182
>PTZ00058 glutathione reductase; Provisional
Probab=98.44 E-value=7.2e-07 Score=94.67 Aligned_cols=39 Identities=33% Similarity=0.465 Sum_probs=34.7
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
++...+|||+||||||+|.++|..+++. |.+|+|||++.
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~----G~~ValIEk~~ 81 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARN----KAKVALVEKDY 81 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHc----CCeEEEEeccc
Confidence 3344689999999999999999999997 99999999874
No 183
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=2.1e-06 Score=89.93 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=33.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
++|||+||||||+|+++|..+++. |++|+|||++..+
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~----G~~V~liE~~~~~ 38 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL----GLKVACVEGRSTL 38 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCce
Confidence 359999999999999999999996 9999999985544
No 184
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.43 E-value=1.5e-06 Score=90.52 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=32.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
++|||+||||||+|+++|+.|++. |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH----GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEecccc
Confidence 469999999999999999999996 99999999964
No 185
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.42 E-value=9.4e-07 Score=94.92 Aligned_cols=40 Identities=33% Similarity=0.584 Sum_probs=35.5
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+.++||+|||+|++|+++|+.+++. |.+|+||||.+..+
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~~iek~~~~g 48 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWH----GLKVIVVEKDPVFG 48 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCC
Confidence 34578999999999999999999996 99999999987653
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.42 E-value=2.3e-06 Score=88.85 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeC-CCcEEEeeE-EEecCCCch
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~~~ad~-V~AdG~~S~ 248 (514)
..+...|.+.+++.+ ++|+++++|+++..+ .+ .+..+.|... ++.++.|+. |.|+|..+.
T Consensus 123 ~~l~~~L~~~a~~~G-v~i~~~~~v~~l~~~---------~~--------~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLG-VEIRYGIAVDRIPPE---------AF--------DGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEec---------CC--------CCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 568889999999887 999999999999761 00 1123334443 335799999 999998887
Q ss_pred hhhhh
Q 010225 249 VRELA 253 (514)
Q Consensus 249 vR~~l 253 (514)
.+.++
T Consensus 185 n~~~~ 189 (432)
T TIGR02485 185 NRDWL 189 (432)
T ss_pred CHHHH
Confidence 55443
No 187
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=2.3e-06 Score=88.98 Aligned_cols=36 Identities=39% Similarity=0.531 Sum_probs=33.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
++|||+||||||+|+++|..|++. |++|+||||++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~----g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA----GKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC----CCEEEEEecCCc
Confidence 469999999999999999999996 999999999863
No 188
>PRK13748 putative mercuric reductase; Provisional
Probab=98.40 E-value=2.3e-06 Score=92.01 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|||+||||||+|+++|..|+++ |++|+|||++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~----G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ----GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence 469999999999999999999997 99999999873
No 189
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.39 E-value=3.5e-06 Score=89.13 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..++||+|||+|.|||++|+.++. .+|+|+||.+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa~------~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLAP------RPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhCc------CCEEEEECCCC
Confidence 457899999999999999999964 48999999986
No 190
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.39 E-value=3.6e-07 Score=68.07 Aligned_cols=32 Identities=34% Similarity=0.627 Sum_probs=29.3
Q ss_pred EECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 60 VVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 60 IVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
|||||++||++|+.|++. |++|+|+|+.+.++
T Consensus 1 IiGaG~sGl~aA~~L~~~----g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA----GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT----TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC----CCcEEEEecCcccC
Confidence 899999999999999996 99999999999874
No 191
>PLN02529 lysine-specific histone demethylase 1
Probab=98.38 E-value=8.7e-05 Score=80.73 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=36.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
..+.||+|||||++|+++|..|++. |++|+|+|+++.++..
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~----g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSF----GFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHc----CCcEEEEecCccCcCc
Confidence 3567999999999999999999996 9999999998876543
No 192
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=3.3e-06 Score=90.77 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+.||+|||+|+|||++|+.+++. |.+|+|+||.+..+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lieK~~~~~ 39 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA----GVHVDLFSLVPVKR 39 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence 356999999999999999999996 99999999988653
No 193
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.37 E-value=3.7e-06 Score=88.35 Aligned_cols=33 Identities=39% Similarity=0.574 Sum_probs=31.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~ 90 (514)
..|||+||||||+|+++|+.|++. |.+|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~----g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL----GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC----CCeEEEEec
Confidence 469999999999999999999997 999999998
No 194
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.36 E-value=2.4e-06 Score=92.70 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=35.0
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
...+||+|||||.|||++|+.+++. |.+|+|+||.+..+
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~----G~~VivleK~~~~~ 41 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQR----GLDTIVLSLVPAKR 41 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHc----CCCEEEEeCCCCCC
Confidence 3568999999999999999999996 99999999987654
No 195
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.36 E-value=6e-07 Score=82.74 Aligned_cols=33 Identities=39% Similarity=0.663 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
||+|||||++|+++|..|++. +++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~----~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP----GAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT----TSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcC----CCeEEEEecccc
Confidence 799999999999999999985 999999988763
No 196
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.36 E-value=3.2e-06 Score=84.30 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=39.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~ 99 (514)
.+..||||||||.+||++|+.|.++ |++|+|+|.++..+.+.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka----G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA----GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc----CcEEEEEeccCCcCceeE
Confidence 4578999999999999999999998 999999999998876655
No 197
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.35 E-value=8.2e-06 Score=84.04 Aligned_cols=43 Identities=33% Similarity=0.440 Sum_probs=38.8
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~ 99 (514)
+..+||+|||+|.+|+.+|..|++. |.+|+++|+++..+...+
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~----GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN----GKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC----CCEEEEecCCCCcCcccc
Confidence 4679999999999999999999997 999999999998875543
No 198
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.34 E-value=1.1e-05 Score=86.08 Aligned_cols=39 Identities=38% Similarity=0.591 Sum_probs=34.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+.++||||||+| +|+++|+.+++. |.+|+||||.+..+
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~----G~~v~v~Ek~~~~G 51 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHEL----GLSVLIVEKSSYVG 51 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHC----CCcEEEEecCCCCc
Confidence 3458999999999 899999999997 99999999987664
No 199
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.33 E-value=7.3e-06 Score=85.62 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
..+.+|+|||||++||++|+.|++.+-.+|.+|+|+|+.+.++.+
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 345799999999999999999998532237899999999987644
No 200
>PLN03000 amine oxidase
Probab=98.31 E-value=9.5e-05 Score=80.99 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=37.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~ 99 (514)
...+|+|||||++||++|..|++. |++|+|+|+++.++...+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~----G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF----GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEEccCcCCCCcc
Confidence 458999999999999999999996 999999999998875543
No 201
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.31 E-value=3.3e-06 Score=90.61 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=36.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
...++||||||+|++|+++|+.+++. |.+|+||||.+..+.
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~----G~~VivlEk~~~~gG 48 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAAR----GLDTLVVEKSAHFGG 48 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEcCCCCCc
Confidence 34578999999999999999999996 999999999987643
No 202
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.31 E-value=5.1e-06 Score=88.75 Aligned_cols=39 Identities=38% Similarity=0.575 Sum_probs=35.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..++||+|||+|++|+++|+.|++. |.+|+||||....+
T Consensus 4 d~~~DvvIiG~G~aGl~aA~~~a~~----G~~v~liEk~~~~g 42 (557)
T PRK12844 4 DETYDVVVVGSGGGGMCAALAAADS----GLEPLIVEKQDKVG 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 3578999999999999999999996 99999999987653
No 203
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.29 E-value=7.4e-06 Score=88.21 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
|+|||+|+|||++|+.+++. |.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~----G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL----GYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHc----CCCEEEEEecCCC
Confidence 79999999999999999996 9999999998844
No 204
>PLN02546 glutathione reductase
Probab=98.28 E-value=3.3e-06 Score=89.68 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=31.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~ 90 (514)
.+|||+||||||+|..+|..|++. |.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF----GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence 459999999999999999999996 999999996
No 205
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.28 E-value=6.8e-06 Score=88.25 Aligned_cols=40 Identities=33% Similarity=0.514 Sum_probs=35.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+.++||+|||+|++|+++|+.+++. |.+|+||||....+
T Consensus 13 ~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~l~ek~~~~g 52 (578)
T PRK12843 13 WDAEFDVIVIGAGAAGMSAALFAAIA----GLKVLLVERTEYVG 52 (578)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence 34578999999999999999999996 99999999987654
No 206
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.27 E-value=9.3e-06 Score=81.68 Aligned_cols=158 Identities=17% Similarity=0.213 Sum_probs=88.3
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeCh-hh-----HHHHHH-cCC---
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-AT-----ISFFKE-IGA--- 126 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-----~~~l~~-lgl--- 126 (514)
||+|||+|+|||++|+.|++ .++|+|+-|.+.....+. +.+ .+-...+.+ .+ .+.|.. -|+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~-----~~~V~vltk~~~~~~sS~-~AQ---GGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~ 79 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP-----SFRVTVLTKGPLGESSSY-WAQ---GGIAAALSEDDSPELHVADTLAAGAGLCDE 79 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC-----CCcEEEEeCCCCCCccch-hhc---CceEeeeCCCCCHHHHHHHHHHhcCCCCcH
Confidence 89999999999999999999 489999999986642221 111 111112221 10 111110 011
Q ss_pred -------------cHHHHhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEE---EehHHHHHHHHHHHhcCCCceEE
Q 010225 127 -------------WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV---VENKVLHSSLLSCMQNTEFQKTI 190 (514)
Q Consensus 127 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~L~~~~~~~g~v~v~ 190 (514)
.+.+...++ ++ +.+......+..........-.. -.-..+...|.+.+++.++++|+
T Consensus 80 ~aV~~iv~~~~~ai~~Li~~Gv-~F------Dr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~ 152 (518)
T COG0029 80 EAVEFIVSEAPEAIEWLIDLGV-PF------DRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVL 152 (518)
T ss_pred HHHHHHHHhHHHHHHHHHHcCC-CC------cCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEE
Confidence 222222222 22 11111111111110001110000 12367889999999998889999
Q ss_pred cCCeeEEEeeCCCCCCcccCCCCccccccccCC-ee-EEEe--CCC--cEEEeeE-EEecCCCchhh
Q 010225 191 YPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LA-KLDL--SDG--TSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 191 ~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~--~~g--~~~~ad~-V~AdG~~S~vR 250 (514)
.++.+.++.. +++ .+ .|.. .++ .++.++. |.|+|.-+.+=
T Consensus 153 e~~~a~~li~--------------------~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 153 EGAEALDLII--------------------EDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred ecchhhhhhh--------------------cCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccc
Confidence 9999999976 222 33 3333 323 4688999 99999987763
No 207
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.26 E-value=1.5e-05 Score=92.19 Aligned_cols=39 Identities=33% Similarity=0.475 Sum_probs=35.3
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
+.++||||||+|.||+++|+.+++. |.+|+|+||.+..+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~----Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASC----GAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence 4568999999999999999999996 99999999988654
No 208
>PRK14727 putative mercuric reductase; Provisional
Probab=98.25 E-value=5.9e-06 Score=86.90 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+.++||+||||||+|+++|..|+++ |.+|+|+|+++.+
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~----g~~v~~ie~~~~~ 51 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEH----GARVTIIEGADVI 51 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCcc
Confidence 3579999999999999999999997 9999999998655
No 209
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.23 E-value=5.2e-06 Score=86.60 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+|+|||||++|+++|..|++.+ .+.+|+|||+++..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~--~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN--KELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC--CCCcEEEEECCCcc
Confidence 6999999999999999999862 24699999998854
No 210
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.21 E-value=0.00011 Score=73.41 Aligned_cols=58 Identities=12% Similarity=0.249 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
..+..-+.+.++++| ++++|+++|.+++. .++....|...+|.++.+|. |.|-|..+.
T Consensus 173 ~~vvkni~~~l~~~G-~ei~f~t~VeDi~~-------------------~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLG-GEIRFNTEVEDIEI-------------------EDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcC-cEEEeeeEEEEEEe-------------------cCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 567778899999998 99999999999987 12235678888999999999 999998764
No 211
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.21 E-value=3.6e-05 Score=72.27 Aligned_cols=44 Identities=18% Similarity=0.313 Sum_probs=33.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCC---CCCcEEEEEcCCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPL---TKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~---~~g~~V~viE~~~~~~~~ 97 (514)
+..+|+|||+|+.||++|+.+.+... ..-.+|+|++-+......
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~ 48 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTT 48 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccc
Confidence 35689999999999999988777411 123689999988766433
No 212
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.19 E-value=1.1e-05 Score=91.75 Aligned_cols=38 Identities=37% Similarity=0.551 Sum_probs=34.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+||+||||||||+++|+.|++. |++|+|+|+.+.++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~----G~~V~liD~~~~~G 199 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA----GARVILVDEQPEAG 199 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCC
Confidence 358999999999999999999996 99999999988764
No 213
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.19 E-value=7.8e-06 Score=77.12 Aligned_cols=182 Identities=16% Similarity=0.116 Sum_probs=103.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHhcc-CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHH---------H
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF---------F 121 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~-~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------l 121 (514)
...+||+||||||++||+.|..|.- + .+.+|.|+|+....+...... +......|+...|.++++ +
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrh---p~l~V~vleke~~la~hqSgh-NSgViHaGIYY~P~SLKAklCV~G~~Ll 120 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRH---PSLKVAVLEKEKSLAVHQSGH-NSGVIHAGIYYKPGSLKAKLCVEGRELL 120 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcC---CCceEEeeehhhhhceeeccc-ccceeeeeeeeCCcccchhhhhccHHHH
Confidence 3467999999999999999998764 4 389999999998775322110 111122344444554432 1
Q ss_pred ----HHcCC-------------------cHHHHhhh-ccCcceEEEEeCCCcceeeeccC--CCCCcccEEEEehHHHHH
Q 010225 122 ----KEIGA-------------------WQYVQQHR-HAYFDKMQVWDYTGLGYTKYNAR--DVNKEILGCVVENKVLHS 175 (514)
Q Consensus 122 ----~~lgl-------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~r~~l~~ 175 (514)
++-++ .+.+.+.+ .+.+..+++.++......+-... ..-..+..-.++-..+..
T Consensus 121 Y~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~l 200 (453)
T KOG2665|consen 121 YEYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTL 200 (453)
T ss_pred HHHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHH
Confidence 11111 11222211 12233444443332221110000 000111123567788888
Q ss_pred HHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 176 ~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
.+.+..+..+ .++..+-++..+.+ .++. .-+-.++|.-..++++++++ |.|.|..|.--..+
T Consensus 201 s~~edF~~~g-g~i~~n~~l~g~~~---------n~~~------~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 201 SFGEDFDFMG-GRIYTNFRLQGIAQ---------NKEA------TFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred HHHHHHHHhc-ccccccceeccchh---------ccCC------CCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 8888888887 68999999999876 1111 12244566655678999999 99999887654443
No 214
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=1.4e-05 Score=83.78 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=32.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|||+||||||+|+++|..|++. |.+|+|||++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~----G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL----GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence 369999999999999999999996 99999999864
No 215
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.18 E-value=1.4e-05 Score=83.86 Aligned_cols=34 Identities=35% Similarity=0.579 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~ 91 (514)
..|||+||||||+|+++|..|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL----GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC----CCeEEEEeCC
Confidence 469999999999999999999996 9999999994
No 216
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.18 E-value=0.00056 Score=68.72 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=34.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
..+|||||||+|||++|..|-+.+ +.+|+|+|..+.++.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~g---f~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENG---FIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhC---CceEEEEEeccccCce
Confidence 458999999999999999999762 6789999999988754
No 217
>PRK12831 putative oxidoreductase; Provisional
Probab=98.17 E-value=3.1e-06 Score=88.39 Aligned_cols=38 Identities=32% Similarity=0.420 Sum_probs=34.5
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....||+||||||+|+++|+.|++. |++|+|||+.+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~----G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM----GYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCC
Confidence 4568999999999999999999996 9999999988755
No 218
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.13 E-value=7.3e-06 Score=85.72 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|+||||||+|+++|..|++. |.+|+|||+++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~----g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN----GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcc
Confidence 799999999999999999997 999999999764
No 219
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.13 E-value=4.8e-06 Score=83.07 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=76.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhH--HHHHHcCCcHHHHh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQYVQQ 132 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~lgl~~~~~~ 132 (514)
.+|+++||.||++|++|+.|... ...++..|||++.+.-.. |..+....+ .+|+++--. .
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~---~~~~~~f~e~~~~f~Wh~-----------gmll~~~~~q~~fl~Dlvt~----~ 63 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH---GDLKALFLERRPSFSWHP-----------GMLLPGARMQVSFLKDLVTL----R 63 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH---H---EEEEES-SS--TTG-----------GG--SS-B-SS-TTSSSSTT----T
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc---CCCCEEEEecCCCCCcCC-----------ccCCCCCccccccccccCcC----c
Confidence 48999999999999999999997 259999999998663111 111111111 112111000 0
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
....++.-+.+....+. ...|-. .....+.|..+.++|.-.+.+.+ -.++++.+|++|+.. .+
T Consensus 64 ~P~s~~sflnYL~~~~r-l~~f~~------~~~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~---------~~ 126 (341)
T PF13434_consen 64 DPTSPFSFLNYLHEHGR-LYEFYN------RGYFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPD---------DD 126 (341)
T ss_dssp -TTSTTSHHHHHHHTT--HHHHHH------H--SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEE---------EE
T ss_pred CCCCcccHHHHHHHcCC-hhhhhh------cCCCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEe---------cC
Confidence 00000000000000000 000000 00123679999999999888887 458999999999871 11
Q ss_pred CccccccccCCeeEEEeC----CCcEEEeeE-EEecCCCchhhhhh
Q 010225 213 PSATTLFTKGHLAKLDLS----DGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~----~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
. +...+.|... ++.++.|+. |.|.|..-.+-..+
T Consensus 127 ~-------~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 127 G-------DEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp T-------TEEEEEEEEEETTS-EEEEEESEEEE----EE---GGG
T ss_pred C-------CccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 0 1135777763 345899999 99999555454444
No 220
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.12 E-value=1.6e-05 Score=85.25 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHhc----cCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLA----SMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~----~~~~~~g~~V~viE~~~~~ 94 (514)
||+|||||+|||++|+.++ +. |.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~----G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK----GLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC----CCeEEEEEccCCC
Confidence 8999999999999999998 54 8999999998864
No 221
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.11 E-value=1.1e-05 Score=82.76 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=31.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+.+|+|||||+||+++|..|++.+ ...+|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~--~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQG--FTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhC--CCCCEEEeCCCCCC
Confidence 457999999999999999999962 12379999988754
No 222
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.10 E-value=7.1e-06 Score=92.16 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=34.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+|||||||||++|+.|++. |++|+|||+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~----G~~VtVfE~~~~~ 341 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE----GFPVTVFEAFHDL 341 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCCC
Confidence 468999999999999999999996 9999999998765
No 223
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.09 E-value=1.3e-05 Score=84.03 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
||+||||||+|+.+|..|++. |.+|+|+|++..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~----g~~v~~~e~~~~ 35 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL----GADVTVIERDGL 35 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCC
Confidence 799999999999999999996 999999998763
No 224
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.07 E-value=3.3e-05 Score=78.69 Aligned_cols=107 Identities=22% Similarity=0.320 Sum_probs=79.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+++|+.+.+. +. .
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~----g~~Vtlv~~~~~~l-------------------~~---------~-------- 180 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRA----GKAVTLVDNAASLL-------------------AS---------L-------- 180 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCccc-------------------ch---------h--------
Confidence 35799999999999999999985 89999999877430 00 0
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
....+...+.+.+++.| ++++++++|+++..
T Consensus 181 ----------------------------------~~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~-------------- 211 (377)
T PRK04965 181 ----------------------------------MPPEVSSRLQHRLTEMG-VHLLLKSQLQGLEK-------------- 211 (377)
T ss_pred ----------------------------------CCHHHHHHHHHHHHhCC-CEEEECCeEEEEEc--------------
Confidence 00123355666676777 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK 256 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~ 256 (514)
++..+.+.+.+|+++.||+ |.|.|..+. +.+..+..
T Consensus 212 ------~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 212 ------TDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred ------cCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCC
Confidence 3345678888999999999 999998664 44444443
No 225
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.06 E-value=3.6e-05 Score=86.89 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.8
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..++||+|||||.|||++|+.+++. |.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~----G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEH----GANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccc
Confidence 3568999999999999999999986 999999999885
No 226
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=7.1e-06 Score=82.60 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=83.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHc-CCcHHHHhhh
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEI-GAWQYVQQHR 134 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l-gl~~~~~~~~ 134 (514)
++|+|||||++|+.+|.+|.+.+-..++ |.|||+.+..+..-.|....+. ..++-.+...--.+ .+.+++.+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~GiaYs~~~p~----~~lNv~a~~mS~~~pD~p~~F~~WL 76 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAYSTEEPE----HLLNVPAARMSAFAPDIPQDFVRWL 76 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCccCCCCCch----hhhccccccccccCCCCchHHHHHH
Confidence 6899999999999999999987432333 9999999988544333222211 11111110000000 0011111110
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcC---CC-c-eEEcCCeeEEEeeCCCCCCccc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT---EF-Q-KTIYPSRLTSMALLPSSSSISV 209 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~---g~-v-~v~~~~~v~~v~~~~~~~~~~~ 209 (514)
.... . ...+. ..... ......+|..|-.+|.+++... +. . -.+...+++++.+
T Consensus 77 ~~~~---~-~~~d~--------~~~~~-d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~--------- 134 (474)
T COG4529 77 QKQL---Q-RYRDP--------EDINH-DGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQ--------- 134 (474)
T ss_pred Hhcc---c-ccCCh--------hhcCC-ccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeeccee---------
Confidence 0000 0 00000 00111 1113456777777776665432 21 1 2233445566554
Q ss_pred CCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhhhh
Q 010225 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVREL 252 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR~~ 252 (514)
+ +.+....+...+|.+..||. |.|+|..-+....
T Consensus 135 --~-------~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 135 --D-------TNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred --c-------cCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 1 12466778888999999999 9999976655544
No 227
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.05 E-value=2e-05 Score=81.11 Aligned_cols=38 Identities=34% Similarity=0.564 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..+||++||||||+|..+|..+++. |.+|+|+|++...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~----G~kvalvE~~~~l 39 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL----GLKVALVEKGERL 39 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC----CCCEEEEeecCCc
Confidence 4579999999999999999999998 8889999999633
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.05 E-value=1.9e-05 Score=82.03 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+|+|||||++|+.+|..|++.. .+.+|+|||+++..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~--~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD--KESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC--CCCCEEEEECCCCc
Confidence 7999999999999999998752 36899999999865
No 229
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.04 E-value=1.5e-05 Score=88.68 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....+|+||||||||+++|+.|++. |++|+|||+.+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~----G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA----GHPVTVFEREENA 574 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccc
Confidence 3457999999999999999999996 9999999998755
No 230
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.03 E-value=0.00012 Score=72.57 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
..+..++.+.+++.| .+|++...|.+|.. +.+..+.|.+.||+++.++. |--.+.|-..
T Consensus 264 Gavs~aia~~~~~~G-aeI~tka~Vq~Ill-------------------d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAG-AEIFTKATVQSILL-------------------DSGKAVGVRLADGTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hHHHHHHHHHHHhcc-ceeeehhhhhheec-------------------cCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence 556778899999998 89999999999987 24567889999999999999 8777777665
Q ss_pred hhhh
Q 010225 250 RELA 253 (514)
Q Consensus 250 R~~l 253 (514)
-+.+
T Consensus 324 ~kLl 327 (561)
T KOG4254|consen 324 EKLL 327 (561)
T ss_pred HHhC
Confidence 5544
No 231
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=4.9e-06 Score=86.71 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=39.8
Q ss_pred CCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCC
Q 010225 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 99 (514)
Q Consensus 51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~ 99 (514)
...++.+|||||||++||++|..|.+. |++|+|+|.++..+.+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~----G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF----GFDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc----CCceEEEeccCCcCceeE
Confidence 345678999999999999999999998 999999999999886653
No 232
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=9.8e-06 Score=82.41 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=48.7
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC--CCCCCCCCCCceEEe----ChhhHHHHHHcCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN--FIKKEDPPDPRVSTV----TPATISFFKEIGA 126 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~--~~~~~~~~~~~~~~l----~~~~~~~l~~lgl 126 (514)
.+|+|+|||+|||++|+.|+.+ |++|+|+|+++.++.+. |.+.+....-.|..+ -++.+..|++++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~ 73 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA----GYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPI 73 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC----CCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCc
Confidence 3699999999999999999997 99999999999988654 433333333333322 2556677777764
No 233
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.01 E-value=4.9e-05 Score=79.71 Aligned_cols=100 Identities=14% Similarity=0.230 Sum_probs=77.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. . .+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~--------------------- 214 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL----GVKVTLINTRDRLL----------S-----FL--------------------- 214 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC----------C-----cC---------------------
Confidence 46899999999999999999996 99999999877430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-.++...|.+.+++.| ++++++++|++++.
T Consensus 215 -----------------------------------d~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~-------------- 244 (461)
T PRK05249 215 -----------------------------------DDEISDALSYHLRDSG-VTIRHNEEVEKVEG-------------- 244 (461)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEECCEEEEEEE--------------
Confidence 0113345666666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
.++.+.+.+.+|.++.+|. |.|.|......
T Consensus 245 ------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 245 ------GDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred ------eCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 2345677777888899999 99999887654
No 234
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.01 E-value=4.4e-05 Score=80.22 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=31.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~ 91 (514)
+|||+||||||+|+.+|+.+++. |.+|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~----G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY----GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence 58999999999999999999997 9999999974
No 235
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.99 E-value=2.5e-05 Score=86.96 Aligned_cols=40 Identities=20% Similarity=0.441 Sum_probs=32.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+.+|||||||++|+.+|..|.+.....+++|+||++.+.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 3489999999999999999976421236899999999865
No 236
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.98 E-value=3.7e-05 Score=68.51 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=67.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..||+|||+|-+||++||..++.. ..++|.|||..-.++...|.-.+... ...+-..+.-+|+++|+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~r--PdlkvaIIE~SVaPGGGaWLGGQLFS---AMvvRKPAhLFL~Eigv-------- 142 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNR--PDLKVAIIESSVAPGGGAWLGGQLFS---AMVVRKPAHLFLQEIGV-------- 142 (328)
T ss_pred ccceEEECCCccccceeeeeeccC--CCceEEEEEeeecCCCcccccchhhh---hhhhcChHHHHHHHhCC--------
Confidence 369999999999999999999642 47999999999888655542111000 01111223334444443
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEee
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL 200 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~ 200 (514)
+++ . ...+-..-+-..|......+...+++++++..+-|.++..
T Consensus 143 --pYe------d--------------egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLiv 186 (328)
T KOG2960|consen 143 --PYE------D--------------EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIV 186 (328)
T ss_pred --Ccc------c--------------CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhc
Confidence 111 0 1111122244556677777777788899888777777765
No 237
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.98 E-value=0.00011 Score=79.51 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~ 91 (514)
.+|||+|||+||+|.++|..+++. |.+|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~----G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER----GLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCC
Confidence 368999999999999999999996 9999999975
No 238
>PRK07208 hypothetical protein; Provisional
Probab=97.95 E-value=7.9e-06 Score=86.11 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=36.7
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
++..||+|||||++||++|+.|++. |++|+|+|+.+.++..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~----g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR----GYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCce
Confidence 4567999999999999999999996 9999999999887643
No 239
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.95 E-value=3.1e-05 Score=78.93 Aligned_cols=37 Identities=14% Similarity=0.400 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.+|+|||||+||+++|..|.+.. ...+|+||++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~--~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD--AHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC--cCCCEEEEeCCCCC
Confidence 48999999999999999998752 35789999998853
No 240
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.95 E-value=3.7e-05 Score=77.97 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+|||||||++|+.+|..|.+.. .++.+|+|||+++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-LPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-CCCCEEEEECCCCCC
Confidence 4899999999999999996531 147899999988743
No 241
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.94 E-value=6.9e-05 Score=75.82 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=35.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
...++||+|||||.+|.-+|+-.+- ||++|.++|++++.+
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~T----RGLktaLVE~~DF~S 103 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAAT----RGLKTALVEAGDFAS 103 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhc----ccceeEEEecccccC
Confidence 3467999999999999999998777 699999999999774
No 242
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.93 E-value=4.4e-05 Score=79.06 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.+.+|||||||.+|+.+|..|.+. +.+|+|||+++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~----~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK----KYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC----CCeEEEEcCCCCc
Confidence 456899999999999999999764 7899999988744
No 243
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.92 E-value=4.3e-05 Score=80.16 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~ 91 (514)
+.|||+||||||+|..+|..+++. .|.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~---~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATL---YKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHh---cCCEEEEEecc
Confidence 469999999999999999999993 18999999984
No 244
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=2.3e-05 Score=79.69 Aligned_cols=152 Identities=14% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC-CCCCCCCCCCCCCCCceEEeChhhHHHHHHcC-CcHHHH
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA-LGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQ 131 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~ 131 (514)
..|||+|||||-||+-+|++.+|. |.+++|+=-+.. .+.-+|. +.-...+.| +--+ .++.|| +.-...
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm----G~ktlLlT~~~dtig~msCN-PaIGG~~KG--~lvr---EIDALGG~Mg~~~ 72 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM----GAKTLLLTLNLDTIGEMSCN-PAIGGPGKG--HLVR---EIDALGGLMGKAA 72 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc----CCeEEEEEcCCCceeecccc-cccCCcccc--eeEE---eehhccchHHHhh
Confidence 459999999999999999999998 999999877653 3333331 000111111 1111 122232 111111
Q ss_pred hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
.... -++++.+......+. .+-..+++.....++.+.+++.+|.+++.+ .|+++..
T Consensus 73 D~~~---IQ~r~LN~sKGPAVr---------a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~----------- 128 (621)
T COG0445 73 DKAG---IQFRMLNSSKGPAVR---------APRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV----------- 128 (621)
T ss_pred hhcC---CchhhccCCCcchhc---------chhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-----------
Confidence 1111 111222211110000 001235667777777788888888888777 6888865
Q ss_pred CCccccccccC-CeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 212 TPSATTLFTKG-HLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 212 ~~~~~~~~~~~-~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
+++ ..+.|.+.+|..+.|+. |.++|.+=
T Consensus 129 --------e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 129 --------EEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred --------cCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 122 35778899999999999 99999753
No 245
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.3e-05 Score=76.84 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=87.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC-CCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (514)
...|||||||||=||+-+|.+.+|. |-+.+++-.+ +.++.-+|. +.....++|..+ +.+++|. |+...+.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~----Ga~TlLlT~~ld~Ig~msCN-PsfGGigKg~Lm--rEVDALd--Gl~~rvc 96 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL----GARTLLLTHNLDTIGEMSCN-PSFGGIGKGHLM--REVDALD--GLCSRVC 96 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc----CCceEEeecccccccccccC-cccCCcccceee--eeehhhc--chHhhhh
Confidence 5689999999999999999999997 8888777765 345444442 111122222222 2223332 2211221
Q ss_pred hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
......+. +.+.... +.- ..+-..++|..+-..+.+.+...++.+|+.+ .|.++.. ..
T Consensus 97 D~s~vq~k---~LNrs~G-PAV--------wg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv---------~~ 154 (679)
T KOG2311|consen 97 DQSGVQYK---VLNRSKG-PAV--------WGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIV---------ED 154 (679)
T ss_pred hhhhhhHH---HhhccCC-Ccc--------cChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheee---------cc
Confidence 11110111 1111100 000 0000245666666666777766677888887 5777765 11
Q ss_pred CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225 212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK 246 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~ 246 (514)
.+.+ ..-...|.+.||..+.|+. |..+|.+
T Consensus 155 ~~~~-----~~~~~gV~l~dgt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 155 PDDG-----HCVVSGVVLVDGTVVYAESVILTTGTF 185 (679)
T ss_pred CCCC-----ceEEEEEEEecCcEeccceEEEeeccc
Confidence 1111 1123457788999999999 9999964
No 246
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.90 E-value=9.5e-05 Score=75.85 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=75.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. ...
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l--------------------------~~~---------- 183 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQR----RCKVTVIELAATVM--------------------------GRN---------- 183 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCcch--------------------------hhh----------
Confidence 35799999999999999999986 99999999877430 000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
....+...+.+.+++.| ++++++++|++++.
T Consensus 184 ----------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~-------------- 214 (396)
T PRK09754 184 ----------------------------------APPPVQRYLLQRHQQAG-VRILLNNAIEHVVD-------------- 214 (396)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHCC-CEEEeCCeeEEEEc--------------
Confidence 00123455666666777 99999999999863
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
++.+.+.+.+|+++.||+ |.|.|.....
T Consensus 215 -------~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 215 -------GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred -------CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 234667788999999999 9999987653
No 247
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=5.6e-05 Score=73.37 Aligned_cols=38 Identities=37% Similarity=0.618 Sum_probs=35.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+|||+|||+||.|-.+|+..++. |++.+.+|++...+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl----GlkTacvEkr~~LG 75 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL----GLKTACVEKRGTLG 75 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh----cceeEEEeccCccC
Confidence 589999999999999999999997 99999999988763
No 248
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.88 E-value=0.00079 Score=68.70 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=53.2
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecC
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADG 244 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG 244 (514)
..++...+...|.+.+++ | ++++++++|++++. +++.+.|++.+|.+++||. |.|+|
T Consensus 130 g~idp~~~~~~l~~~~~~-G-~~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~a~~vV~a~G 187 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGI-R-LTLHFNTEITSLER--------------------DGEGWQLLDANGEVIAASVVVLANG 187 (381)
T ss_pred cccChHHHHHHHHhccCC-C-cEEEeCCEEEEEEE--------------------cCCeEEEEeCCCCEEEcCEEEEcCC
Confidence 357889999999999988 7 99999999999986 3456788888888899999 99999
Q ss_pred CCchh
Q 010225 245 GKSRV 249 (514)
Q Consensus 245 ~~S~v 249 (514)
.++.-
T Consensus 188 ~~~~~ 192 (381)
T TIGR03197 188 AQAGQ 192 (381)
T ss_pred ccccc
Confidence 99853
No 249
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.88 E-value=1.2e-05 Score=84.97 Aligned_cols=40 Identities=33% Similarity=0.534 Sum_probs=36.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
+..++||+|||||.|||.+|+.++.. |++|+|+||....+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~----g~~V~l~~K~~~~r 42 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEA----GLKVALLSKAPPKR 42 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhc----CCcEEEEEccccCC
Confidence 45679999999999999999999996 89999999998776
No 250
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=9.2e-05 Score=77.64 Aligned_cols=99 Identities=21% Similarity=0.334 Sum_probs=74.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. + .+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~--------------------- 211 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASL----GAEVTIVEALPRIL----------P-----GE--------------------- 211 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCcC----------C-----cC---------------------
Confidence 35899999999999999999986 99999999987430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
...+...+.+.+++.+ ++++++++|++++.
T Consensus 212 -----------------------------------~~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~-------------- 241 (462)
T PRK06416 212 -----------------------------------DKEISKLAERALKKRG-IKIKTGAKAKKVEQ-------------- 241 (462)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------
Confidence 0123345556666667 99999999999976
Q ss_pred cccccccCCeeEEEeCCC---cEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDG---TSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~~S~v 249 (514)
+++.+.+.+.++ +++.||. |.|.|.....
T Consensus 242 ------~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 242 ------TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred ------eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 334566766665 5799999 9999987655
No 251
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.86 E-value=6e-05 Score=77.81 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 174 ~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
...+...+...+ .+|+++++|++|+. .++.+.|.+.+|.++.||. |.|.......+
T Consensus 212 ~~~~~~~~~~~g-~~i~l~~~V~~I~~--------------------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 212 SLALALAAEELG-GEIRLNTPVTRIER--------------------EDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp HHHHHHHHHHHG-GGEESSEEEEEEEE--------------------ESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred hHHHHHHHhhcC-ceeecCCcceeccc--------------------cccccccccccceEEecceeeecCchhhhhh
Confidence 333333444345 68999999999998 5588999999999999999 76666544443
No 252
>PRK06116 glutathione reductase; Validated
Probab=97.85 E-value=0.00014 Score=75.99 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=75.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+++++.+.+. ....
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l---------------~~~~-------------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGL----GSETHLFVRGDAPL---------------RGFD-------------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCc---------------cccC--------------------
Confidence 35899999999999999999996 89999999876430 0000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
..+...+.+.+++.| ++++++++|++++.
T Consensus 208 ------------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~-------------- 236 (450)
T PRK06116 208 ------------------------------------PDIRETLVEEMEKKG-IRLHTNAVPKAVEK-------------- 236 (450)
T ss_pred ------------------------------------HHHHHHHHHHHHHCC-cEEECCCEEEEEEE--------------
Confidence 113345566666667 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
+.++.+.+.+.+|+++.||. |.|.|....+.
T Consensus 237 -----~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 237 -----NADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred -----cCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 11233677788888999999 99999876553
No 253
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.85 E-value=4e-05 Score=85.19 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=30.2
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
|||||||+||+++|..|.+.. ..+++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~-~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN-RHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC-CCCCeEEEEeCCCCC
Confidence 689999999999999887752 136899999998865
No 254
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.2e-05 Score=75.06 Aligned_cols=115 Identities=23% Similarity=0.335 Sum_probs=79.3
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
...|||+||||||+|.++|++.+|. |++.-|+-.+- - |- .|+-+++ +.+..
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARK----GiRTGl~aerf-G---------------GQ--------vldT~~I-ENfIs 259 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARK----GIRTGLVAERF-G---------------GQ--------VLDTMGI-ENFIS 259 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhh----cchhhhhhhhh-C---------------Ce--------eccccch-hheec
Confidence 3569999999999999999999995 87754442211 0 11 1111121 01100
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
++ ..+-.+|...|.+.+++.. |++....+.+.++.- .
T Consensus 260 -------------------v~-------------~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~a---------~- 296 (520)
T COG3634 260 -------------------VP-------------ETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEPA---------A- 296 (520)
T ss_pred -------------------cc-------------cccchHHHHHHHHHHhhcC-chhhhhhhhhcceec---------C-
Confidence 00 0234668899999999987 999888888888751 0
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCC
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGK 246 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~ 246 (514)
..++-++|++++|-.+.++. |.++|+.
T Consensus 297 -------~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 297 -------VEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred -------CCCccEEEEecCCceeccceEEEecCcc
Confidence 13467899999999999999 9999973
No 255
>PRK07846 mycothione reductase; Reviewed
Probab=97.82 E-value=7.5e-05 Score=77.88 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|||+||||||+|.++|.. .. |.+|+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~----G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA----DKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCCC
Confidence 3899999999999988865 33 899999998653
No 256
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.78 E-value=3.2e-05 Score=80.45 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=34.3
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....+|+||||||||+++|..|++.. +|++|+|||+.+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~--~g~~Vtv~E~~p~p 63 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAH--DGARVDIIERLPTP 63 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhC--CCCeEEEEecCCCC
Confidence 44678999999999999999998521 39999999999976
No 257
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.78 E-value=3.4e-05 Score=80.91 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=48.7
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCC--CCCCCCCCceE----EeChhhHHHHHHcCCcHHH
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--KKEDPPDPRVS----TVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~--~~~~~~~~~~~----~l~~~~~~~l~~lgl~~~~ 130 (514)
+|+|||||++||++|+.|++. |++|+|+|+.+.++..... .........|. ...++..++++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA----GHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 589999999999999999996 9999999999887543211 11111111111 1246677888889876554
Q ss_pred H
Q 010225 131 Q 131 (514)
Q Consensus 131 ~ 131 (514)
.
T Consensus 77 ~ 77 (474)
T TIGR02732 77 L 77 (474)
T ss_pred c
Confidence 3
No 258
>PLN02507 glutathione reductase
Probab=97.78 E-value=0.0002 Score=75.68 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=75.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+++.+.+- . .+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~~l----------~-----~~--------------------- 242 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGM----GATVDLFFRKELPL----------R-----GF--------------------- 242 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEecCCcC----------c-----cc---------------------
Confidence 35899999999999999999996 89999999876430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-..+...+.+.+++.| ++++.+++|++++.
T Consensus 243 -----------------------------------d~~~~~~l~~~l~~~G-I~i~~~~~V~~i~~-------------- 272 (499)
T PLN02507 243 -----------------------------------DDEMRAVVARNLEGRG-INLHPRTNLTQLTK-------------- 272 (499)
T ss_pred -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence 0123344556666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.+|+++.+|. |.|.|.....
T Consensus 273 ------~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 273 ------TEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred ------eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 2345677788888899999 9999987665
No 259
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.76 E-value=0.00074 Score=64.55 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=33.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..+||+|||+|.+||.+|+.|+.. |++|+|+|+...-
T Consensus 4 ~~~dvivvgaglaglvaa~elA~a----G~~V~ildQEgeq 40 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADA----GKRVLILDQEGEQ 40 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhc----CceEEEEcccccc
Confidence 468999999999999999999996 9999999998754
No 260
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.76 E-value=2.5e-05 Score=82.57 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=34.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
.||+|||||++||++|+.|++. |++|+|+|+++.++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~----G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR----GYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCCC
Confidence 5899999999999999999996 999999999988763
No 261
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.75 E-value=0.00014 Score=73.15 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=33.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
++.+|||||||-+|+.+|..|.+.+ + +.+|++||+++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~h 40 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYH 40 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCcc
Confidence 3567999999999999999999973 2 6899999999844
No 262
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.74 E-value=7e-05 Score=78.14 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=27.7
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|||+|||+||+|..+|.. .+ |.+|+|+|++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~----g~~V~lie~~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA----DKRIAIVEKGTF 34 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCCC
Confidence 5999999999999888654 34 899999998653
No 263
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.74 E-value=0.00028 Score=74.04 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=75.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||..|+-+|..|++. |.+|+++|+.+.+. . ...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~d--------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL----GVKVTLVSSRDRVL----------P-----GED--------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCcCC----------C-----CCC---------------------
Confidence 4799999999999999999996 99999999877430 0 000
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
..+...+.+.+++.| ++++++++|++++.
T Consensus 218 -----------------------------------~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------- 246 (466)
T PRK07845 218 -----------------------------------ADAAEVLEEVFARRG-MTVLKRSRAESVER--------------- 246 (466)
T ss_pred -----------------------------------HHHHHHHHHHHHHCC-cEEEcCCEEEEEEE---------------
Confidence 113344566666666 99999999999975
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
.++.+.+.+.+|+++.+|. |.|.|......
T Consensus 247 -----~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 247 -----TGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred -----eCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 2345677778888999999 99999876653
No 264
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.74 E-value=3.2e-05 Score=77.85 Aligned_cols=37 Identities=30% Similarity=0.616 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
+||+|||||++|+++|+.|++. |.+|+|+|+++..+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~----G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL----NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCCCC
Confidence 6999999999999999999986 999999999876643
No 265
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.74 E-value=0.00023 Score=74.06 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=72.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+.+|..|++. |.+|+|+|+.+.+. .
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-----------------------------~--------- 194 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKL----GSKVTVLDAASTIL-----------------------------P--------- 194 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCccC-----------------------------C---------
Confidence 35899999999999999999996 89999999987430 0
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
.. ...+...+.+.+++.| ++++++++|++++.
T Consensus 195 --~~-------------------------------~~~~~~~~~~~l~~~G-I~i~~~~~V~~i~~-------------- 226 (438)
T PRK07251 195 --RE-------------------------------EPSVAALAKQYMEEDG-ITFLLNAHTTEVKN-------------- 226 (438)
T ss_pred --CC-------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEe--------------
Confidence 00 0112334556666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
+++.+.+.. +|.++.+|. |.|.|....+
T Consensus 227 ------~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 227 ------DGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred ------cCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 223455543 566899999 9999987664
No 266
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.73 E-value=0.00026 Score=73.87 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=74.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. . .+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l----------~-----~~--------------------- 205 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGL----GVQVTLIYRGELIL----------R-----GF--------------------- 205 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEeCCCCC----------c-----cc---------------------
Confidence 35799999999999999999986 89999999876330 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-.++...+.+.+++.| ++++.+++|++++.
T Consensus 206 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~-------------- 235 (446)
T TIGR01424 206 -----------------------------------DDDMRALLARNMEGRG-IRIHPQTSLTSITK-------------- 235 (446)
T ss_pred -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence 0123344556666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.+|+++.+|. |.|.|....+
T Consensus 236 ------~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 236 ------TDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred ------cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 2244667777888899999 9999986554
No 267
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.00029 Score=73.77 Aligned_cols=99 Identities=22% Similarity=0.351 Sum_probs=71.7
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. . +
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~ll----------~------------------~--------- 208 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRL----GTKVTIVEMAPQLL----------P------------------G--------- 208 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC----------c------------------c---------
Confidence 35899999999999999999986 89999999877330 0 0
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. -.++.+.+.+.+++.| ++++++++|++++.
T Consensus 209 ---------------------------------~-d~e~~~~l~~~L~~~G-I~i~~~~~V~~i~~-------------- 239 (458)
T PRK06912 209 ---------------------------------E-DEDIAHILREKLENDG-VKIFTGAALKGLNS-------------- 239 (458)
T ss_pred ---------------------------------c-cHHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------
Confidence 0 0123455666677666 99999999999975
Q ss_pred cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~v 249 (514)
.+..+.+...++ .++.||+ |.|.|....+
T Consensus 240 ------~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 240 ------YKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred ------cCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 223344443222 3699999 9999987765
No 268
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.73 E-value=0.00095 Score=66.69 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=51.6
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEeCCCcEEEeeE-EEec
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKL-VGAD 243 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~-V~Ad 243 (514)
..++...+...|.+.+.+.| ++++.+++|++++. .++. ..|...+| ++.||. |.|+
T Consensus 132 g~v~p~~l~~~l~~~~~~~g-~~~~~~~~v~~i~~--------------------~~~~~~~v~~~~g-~~~a~~vV~a~ 189 (337)
T TIGR02352 132 AHVDPRALLKALEKALEKLG-VEIIEHTEVQHIEI--------------------RGEKVTAIVTPSG-DVQADQVVLAA 189 (337)
T ss_pred ceEChHHHHHHHHHHHHHcC-CEEEccceEEEEEe--------------------eCCEEEEEEcCCC-EEECCEEEEcC
Confidence 46788999999999999988 99999999999986 3343 45676666 699999 9999
Q ss_pred CCCchh
Q 010225 244 GGKSRV 249 (514)
Q Consensus 244 G~~S~v 249 (514)
|.++.-
T Consensus 190 G~~~~~ 195 (337)
T TIGR02352 190 GAWAGE 195 (337)
T ss_pred Chhhhh
Confidence 998864
No 269
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.72 E-value=3.7e-05 Score=85.93 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..++|+||||||||+++|+.|++. |++|+|||+.+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~----G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA----GHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeccccc
Confidence 457999999999999999999996 9999999998765
No 270
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.71 E-value=0.00025 Score=74.49 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=72.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. + ..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~~l----------~-----~~--------------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNY----GVDVTIVEFLDRAL----------P-----NE--------------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCcC----------C-----cc---------------------
Confidence 35899999999999999999996 89999999876430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-..+...+.+.+++.| ++++++++|++++.
T Consensus 212 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~-------------- 241 (466)
T PRK07818 212 -----------------------------------DAEVSKEIAKQYKKLG-VKILTGTKVESIDD-------------- 241 (466)
T ss_pred -----------------------------------CHHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------
Confidence 0113344556666666 99999999999975
Q ss_pred cccccccCCeeEEEeC--CCc--EEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLS--DGT--SLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~--~g~--~~~ad~-V~AdG~~S~v 249 (514)
.+..+.+.+. +|. ++.+|. |.|.|....+
T Consensus 242 ------~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 242 ------NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred ------eCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 2234444443 563 699999 9999987665
No 271
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.71 E-value=0.00032 Score=72.28 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=79.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
.+-.++|||||+.|+=+|..+++. |.+|+|+|+.+.+-
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~L----G~~VTiie~~~~iL-------------------------------------- 209 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAAL----GSKVTVVERGDRIL-------------------------------------- 209 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC--------------------------------------
Confidence 456799999999999999999998 99999999998651
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
+. .-.++.+.+.+.+++.+ ++++.+++++.++.
T Consensus 210 ---p~------------------------------~D~ei~~~~~~~l~~~g-v~i~~~~~v~~~~~------------- 242 (454)
T COG1249 210 ---PG------------------------------EDPEISKELTKQLEKGG-VKILLNTKVTAVEK------------- 242 (454)
T ss_pred ---Cc------------------------------CCHHHHHHHHHHHHhCC-eEEEccceEEEEEe-------------
Confidence 00 01335567777777744 99999999999976
Q ss_pred ccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCchhh
Q 010225 214 SATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S~vR 250 (514)
.++.+.+.+++|. ++++|. +.|.|....+-
T Consensus 243 -------~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~ 275 (454)
T COG1249 243 -------KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred -------cCCeEEEEEecCCCCEEEeeEEEEccCCccCCC
Confidence 3344888888876 699999 99999876663
No 272
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.70 E-value=0.0003 Score=73.44 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=75.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||..|+-+|..|++. |.+|+|+|+.+.+. ..+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~il---------------~~~--------------------- 205 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGL----GSETHLVIRHERVL---------------RSF--------------------- 205 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC---------------ccc---------------------
Confidence 35899999999999999999996 99999999887440 000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-..+...+.+.+++.| ++++.+++|++++.
T Consensus 206 -----------------------------------d~~~~~~~~~~l~~~g-I~i~~~~~v~~i~~-------------- 235 (450)
T TIGR01421 206 -----------------------------------DSMISETITEEYEKEG-INVHKLSKPVKVEK-------------- 235 (450)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence 0123345566666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchhh
Q 010225 215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~vR 250 (514)
+.++.+.+.+.+| .++.||. |.|.|....+.
T Consensus 236 -----~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 236 -----TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----eCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 0123356777777 5799999 99999876653
No 273
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.68 E-value=9.6e-05 Score=70.12 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.|||||+|.|||+++..+... |-.|+++|+....+
T Consensus 11 pvvVIGgGLAGLsasn~iin~----gg~V~llek~~s~G 45 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK----GGIVILLEKAGSIG 45 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc----CCeEEEEeccCCcC
Confidence 599999999999999999885 44599999998775
No 274
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.66 E-value=4.2e-05 Score=75.14 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
||+||||+|++|+.+|..|++.+ +.+|+|+|++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~---~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG---NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST---TS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCC---CCcEEEEEccccCc
Confidence 79999999999999999999972 47999999998654
No 275
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.66 E-value=0.00034 Score=77.95 Aligned_cols=98 Identities=22% Similarity=0.382 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+ +.. .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~----G~~Vtvv~~~~~l--------------------------l~~-----~l----- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL----GMDVSVIHHAPGL--------------------------MAK-----QL----- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc----CCeEEEEccCCch--------------------------hhh-----hc-----
Confidence 5799999999999999999996 9999999987633 000 00
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
-..+...+.+.+++.| ++++++++++++..
T Consensus 181 ----------------------------------d~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~--------------- 210 (785)
T TIGR02374 181 ----------------------------------DQTAGRLLQRELEQKG-LTFLLEKDTVEIVG--------------- 210 (785)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCceEEEEc---------------
Confidence 0113345566666777 99999999999864
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
++....|.+.||+++.+|+ |.|.|....
T Consensus 211 -----~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 211 -----ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred -----CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 2345567888999999999 999997654
No 276
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.66 E-value=9.1e-05 Score=71.11 Aligned_cols=40 Identities=25% Similarity=0.506 Sum_probs=35.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~ 98 (514)
...+|+|||+|++||++|+.|++ .++|+|||.+...+...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~-----rhdVTLfEA~~rlGGha 46 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR-----RHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc-----ccceEEEeccccccCcc
Confidence 45789999999999999999999 48999999999886443
No 277
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=0.00032 Score=73.77 Aligned_cols=100 Identities=15% Similarity=0.269 Sum_probs=73.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. . ..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~--------------------- 222 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRL----GAEVTILEALPAFL----------A-----AA--------------------- 222 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCccC----------C-----cC---------------------
Confidence 35899999999999999999996 89999999887430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-..+...+.+.+++.| ++++.+++|++++.
T Consensus 223 -----------------------------------d~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~-------------- 252 (475)
T PRK06327 223 -----------------------------------DEQVAKEAAKAFTKQG-LDIHLGVKIGEIKT-------------- 252 (475)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-cEEEeCcEEEEEEE--------------
Confidence 0223344556666666 99999999999976
Q ss_pred cccccccCCeeEEEeCC--C--cEEEeeE-EEecCCCchhh
Q 010225 215 ATTLFTKGHLAKLDLSD--G--TSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~--g--~~~~ad~-V~AdG~~S~vR 250 (514)
.+..+.+.+.+ | .++.+|. |.|.|....+.
T Consensus 253 ------~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 253 ------GGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred ------cCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 22345555544 3 4699999 99999876653
No 278
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.66 E-value=4.9e-05 Score=72.37 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=32.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+++||+|||||.||+++|+.|+++ |.++.||-++..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~----Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQA----GKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhc----CCcEEEEeCChh
Confidence 478999999999999999999997 999999998764
No 279
>PRK07846 mycothione reductase; Reviewed
Probab=97.65 E-value=0.00041 Score=72.35 Aligned_cols=98 Identities=15% Similarity=0.272 Sum_probs=72.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. . .+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~ll----------~-----~~d-------------------- 206 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSAL----GVRVTVVNRSGRLL----------R-----HLD-------------------- 206 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c-----ccC--------------------
Confidence 35899999999999999999996 99999999877430 0 000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
.++.+.+.+.. +.+ ++++++++|++++.
T Consensus 207 ------------------------------------~~~~~~l~~l~-~~~-v~i~~~~~v~~i~~-------------- 234 (451)
T PRK07846 207 ------------------------------------DDISERFTELA-SKR-WDVRLGRNVVGVSQ-------------- 234 (451)
T ss_pred ------------------------------------HHHHHHHHHHH-hcC-eEEEeCCEEEEEEE--------------
Confidence 01122233222 335 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.+|+++.+|. |.|.|....+
T Consensus 235 ------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 235 ------DGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred ------cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 3345677778888999999 9999987655
No 280
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.64 E-value=4.4e-05 Score=80.10 Aligned_cols=33 Identities=33% Similarity=0.647 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
|||+||||||+|+++|..|++. |++|+|||++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~----g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL----GASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCc
Confidence 7999999999999999999996 99999999876
No 281
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.64 E-value=0.00037 Score=73.12 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=71.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. . ..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~--------------------- 205 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARL----GSEVTILQRSDRLL----------P-----RE--------------------- 205 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCcCC----------C-----cc---------------------
Confidence 36899999999999999999996 99999999887430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-..+...+.+.+++.+ ++++++++|+.++.
T Consensus 206 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~-------------- 235 (463)
T TIGR02053 206 -----------------------------------EPEISAAVEEALAEEG-IEVVTSAQVKAVSV-------------- 235 (463)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------
Confidence 0113344555666666 99999999999975
Q ss_pred cccccccCCeeEEEeC---CCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLS---DGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~---~g~~~~ad~-V~AdG~~S~v 249 (514)
+++.+.+.+. ++.++.+|. |.|.|.....
T Consensus 236 ------~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 236 ------RGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ------cCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 2233444432 235799999 9999976654
No 282
>PRK06370 mercuric reductase; Validated
Probab=97.63 E-value=0.00045 Score=72.46 Aligned_cols=99 Identities=13% Similarity=0.239 Sum_probs=71.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. . ..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l----------~-----~~--------------------- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRF----GSEVTVIERGPRLL----------P-----RE--------------------- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCCC----------c-----cc---------------------
Confidence 35899999999999999999996 89999999887430 0 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-..+.+.+.+.+++.| ++++++++|++++.
T Consensus 211 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~-------------- 240 (463)
T PRK06370 211 -----------------------------------DEDVAAAVREILEREG-IDVRLNAECIRVER-------------- 240 (463)
T ss_pred -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence 0123345566666666 99999999999975
Q ss_pred cccccccCCeeEEE--eC-CCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLD--LS-DGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~--~~-~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+. .. ++.++.+|. |.|.|.....
T Consensus 241 ------~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 241 ------DGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ------cCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 22333333 33 345799999 9999977654
No 283
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=0.00042 Score=72.89 Aligned_cols=101 Identities=18% Similarity=0.365 Sum_probs=72.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+. +
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~----g~~Vtli~~~~~il----------~---------------------------- 217 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADF----GVEVTVVEAADRIL----------P---------------------------- 217 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCccC----------C----------------------------
Confidence 35899999999999999999996 99999999887430 0
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. ....+...+.+.+++.| ++++.+++|++++. ++
T Consensus 218 --~-------------------------------~~~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------~~--- 251 (472)
T PRK05976 218 --T-------------------------------EDAELSKEVARLLKKLG-VRVVTGAKVLGLTL---------KK--- 251 (472)
T ss_pred --c-------------------------------CCHHHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------ec---
Confidence 0 00223445556666666 99999999999963 00
Q ss_pred cccccccCCeeEEEeCCCc--EEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S~v 249 (514)
.+....+.+.+|. ++.+|. |.|.|....+
T Consensus 252 ------~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 252 ------DGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ------CCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 1123334445663 699999 9999987654
No 284
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=0.0003 Score=69.35 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=94.3
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhH--HHHHHcCCcHH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQY 129 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~lgl~~~ 129 (514)
+...+|++.||-||.-|++|+.|..+ .++++..+||++.+... + |..+...++ .++++|=
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~---~~~~~lFLerkp~F~WH----------p-GmllegstlQv~FlkDLV---- 63 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEH---SGLKSLFLERKPDFSWH----------P-GMLLEGSTLQVPFLKDLV---- 63 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccc---cCcceEEEecCCCCCcC----------C-CcccCCccccccchhhhc----
Confidence 45679999999999999999999998 36889999999987321 1 233332222 1233220
Q ss_pred HHhhhccCcceEEEEe---CCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCC
Q 010225 130 VQQHRHAYFDKMQVWD---YTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS 206 (514)
Q Consensus 130 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~ 206 (514)
... .+-...+|.+ ..+ ....| .....+.+.|.++.+++.=.+...+ .+++|.+|++|..
T Consensus 64 --Tl~-~PTs~ySFLNYL~~h~-RLy~F------l~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~------ 125 (436)
T COG3486 64 --TLV-DPTSPYSFLNYLHEHG-RLYEF------LNYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISS------ 125 (436)
T ss_pred --ccc-CCCCchHHHHHHHHcc-hHhhh------hhhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccc------
Confidence 000 0111111111 000 00000 0011256889999998888887776 5789999997732
Q ss_pred cccCCCCccccccccCCeeE--EEeCCCcEEEeeE-EEecCCCchhhhhh
Q 010225 207 ISVDSTPSATTLFTKGHLAK--LDLSDGTSLYAKL-VGADGGKSRVRELA 253 (514)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~~ad~-V~AdG~~S~vR~~l 253 (514)
.+ .+.... +...++..++|+- |...|..-.+-..+
T Consensus 126 ----~~--------~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 126 ----LD--------GDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred ----cC--------CcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHH
Confidence 11 223333 6667787899999 99999877665444
No 285
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.59 E-value=0.00056 Score=70.98 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=72.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||++|+-+|..|++. |.+|+++++.+.+. . .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~~------------------~-----------------~--- 175 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER----GKNVTLIHRSERIL------------------N-----------------K--- 175 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcccC------------------c-----------------c---
Confidence 5899999999999999999996 89999999876320 0 0
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
. . ...+...+.+.+++.| ++++++++|++++.
T Consensus 176 -~------------------------------~-~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--------------- 207 (427)
T TIGR03385 176 -L------------------------------F-DEEMNQIVEEELKKHE-INLRLNEEVDSIEG--------------- 207 (427)
T ss_pred -c------------------------------c-CHHHHHHHHHHHHHcC-CEEEeCCEEEEEec---------------
Confidence 0 0 0223455666667777 99999999999964
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
+ +.+ +.+.+|+++.+|. |.|.|.....
T Consensus 208 -----~-~~~-v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 208 -----E-ERV-KVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred -----C-CCE-EEEcCCCEEEeCEEEECCCccCCH
Confidence 1 222 4566888999999 9999987543
No 286
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.58 E-value=6.6e-05 Score=75.02 Aligned_cols=37 Identities=35% Similarity=0.714 Sum_probs=34.7
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+|+|||||++|+++|+.|++. |++|.|+||.+.++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~----G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM----GFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc----CCeEEEEecCCccc
Confidence 46899999999999999999998 99999999999885
No 287
>PRK02106 choline dehydrogenase; Validated
Probab=97.58 E-value=7.2e-05 Score=80.33 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=34.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
++.++|+||||||++|+.+|..|++. .|++|+|||+++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~---~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSED---PDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhC---CCCeEEEecCCCc
Confidence 45679999999999999999999994 3999999999963
No 288
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.57 E-value=0.00051 Score=71.43 Aligned_cols=94 Identities=12% Similarity=0.209 Sum_probs=71.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. +. +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~-------------------~~-------~----------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER----GLHPTLIHRSDKIN-------------------KL-------M----------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecccccc-------------------hh-------c-----------
Confidence 5899999999999999999996 89999999877430 00 0
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
-.++...+.+.+++.| ++++++++|++++.
T Consensus 188 ----------------------------------d~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~--------------- 217 (438)
T PRK13512 188 ----------------------------------DADMNQPILDELDKRE-IPYRLNEEIDAING--------------- 217 (438)
T ss_pred ----------------------------------CHHHHHHHHHHHHhcC-CEEEECCeEEEEeC---------------
Confidence 0123345566666766 99999999999853
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
. .+.+.+|+++.+|. |.|.|.....
T Consensus 218 -------~--~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 218 -------N--EVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred -------C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence 2 45567788899999 9999976644
No 289
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.54 E-value=0.00058 Score=71.61 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=31.7
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~----G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRL----GAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCC
Confidence 46899999999999999999996 999999998764
No 290
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.54 E-value=0.0007 Score=70.55 Aligned_cols=97 Identities=13% Similarity=0.295 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. + .
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~---------~------------------- 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF----GSKVTILEAASLFL----------P---------R------------------- 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCCC----------C---------C-------------------
Confidence 4899999999999999999996 99999999876430 0 0
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
. -..+...+.+.+++.| ++++++++|++++.
T Consensus 197 --~-------------------------------~~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~--------------- 227 (441)
T PRK08010 197 --E-------------------------------DRDIADNIATILRDQG-VDIILNAHVERISH--------------- 227 (441)
T ss_pred --c-------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence 0 0123345666777777 99999999999975
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
+++.+.+..+++ ++.+|. |.|.|.....
T Consensus 228 -----~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 228 -----HENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -----cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 234566666555 489999 9999987765
No 291
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.53 E-value=0.00057 Score=76.34 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=75.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
..++|||||+.|+-+|..|++. |.+|+|+|+.+.+- +. .+
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~----G~~VtvVe~~~~ll-------------------~~------------~l----- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL----GVETHVIEFAPMLM-------------------AE------------QL----- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccch-------------------hh------------hc-----
Confidence 4799999999999999999996 99999999876320 00 00
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
-......+.+.+++.| |+++++++++++.. +.
T Consensus 186 ----------------------------------d~~~~~~l~~~L~~~G-V~v~~~~~v~~I~~-----------~~-- 217 (847)
T PRK14989 186 ----------------------------------DQMGGEQLRRKIESMG-VRVHTSKNTLEIVQ-----------EG-- 217 (847)
T ss_pred ----------------------------------CHHHHHHHHHHHHHCC-CEEEcCCeEEEEEe-----------cC--
Confidence 0123355666777777 99999999999964 00
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.+....+.+.||+++.+|+ |.|.|.....
T Consensus 218 -----~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 218 -----VEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred -----CCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 1234567888999999999 9999976654
No 292
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.52 E-value=0.00011 Score=72.48 Aligned_cols=75 Identities=25% Similarity=0.508 Sum_probs=47.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCC-------CCceE----EeChhhHHHHH
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPP-------DPRVS----TVTPATISFFK 122 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~-------~~~~~----~l~~~~~~~l~ 122 (514)
...+|+|||||++||++||+|++.. ....|+|+|+.+..+ +|....... .+++. -...+.+..++
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~--p~~~i~l~Ea~~RvG--GwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~ 85 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLG--PDVTITLFEASPRVG--GWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVS 85 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcC--CCceEEEEecCCccc--ceeeeccCCCceeeccCCCccCcCCcchhHHHHHHH
Confidence 4578999999999999999999972 123467799998763 442221000 01111 11224667788
Q ss_pred HcCCcHHHHh
Q 010225 123 EIGAWQYVQQ 132 (514)
Q Consensus 123 ~lgl~~~~~~ 132 (514)
++|+.+++..
T Consensus 86 dLGl~~e~~~ 95 (491)
T KOG1276|consen 86 DLGLEDELQP 95 (491)
T ss_pred HcCccceeee
Confidence 8998666544
No 293
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.51 E-value=8.9e-05 Score=78.30 Aligned_cols=33 Identities=42% Similarity=0.553 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~ 91 (514)
.|||+||||||+|+++|..|+++ |++|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~----G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH----GKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC----CCeEEEEecc
Confidence 58999999999999999999997 9999999974
No 294
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.50 E-value=0.00012 Score=75.38 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
....|+||||||||+.+|..|.+. .|++|+||||.+.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~---~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH---ERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh---cCCeEEEEecCCCCc
Confidence 456899999999999999976543 399999999999873
No 295
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.49 E-value=0.001 Score=69.44 Aligned_cols=98 Identities=17% Similarity=0.285 Sum_probs=70.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+. ..+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~ll---------------~~~d-------------------- 209 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSAL----GTRVTIVNRSTKLL---------------RHLD-------------------- 209 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccc---------------cccC--------------------
Confidence 35899999999999999999996 89999999876330 0000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
.++...+.+.. +.+ ++++++++|++++.
T Consensus 210 ------------------------------------~~~~~~l~~~~-~~g-I~i~~~~~V~~i~~-------------- 237 (452)
T TIGR03452 210 ------------------------------------EDISDRFTEIA-KKK-WDIRLGRNVTAVEQ-------------- 237 (452)
T ss_pred ------------------------------------HHHHHHHHHHH-hcC-CEEEeCCEEEEEEE--------------
Confidence 00112222222 235 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.+|+++.+|. |.|.|.....
T Consensus 238 ------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 238 ------DGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred ------cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 2345677777888899999 9999976654
No 296
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.49 E-value=0.0011 Score=69.64 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=74.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..++.. ...|.+|+|+|+.+.+. ..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l-~~~G~~Vtli~~~~~il---------------~~~--------------------- 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAY-KPRGGKVTLCYRNNMIL---------------RGF--------------------- 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHh-ccCCCeEEEEecCCccc---------------ccc---------------------
Confidence 35799999999999999765432 00388999999887430 000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
-.++.+.+.+.+++.| ++++++++|++++.
T Consensus 230 -----------------------------------d~~~~~~l~~~L~~~G-I~i~~~~~v~~i~~-------------- 259 (486)
T TIGR01423 230 -----------------------------------DSTLRKELTKQLRANG-INIMTNENPAKVTL-------------- 259 (486)
T ss_pred -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence 0234456666777777 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
+.++...+.+.+|.++.+|. |.|.|......
T Consensus 260 -----~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 260 -----NADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred -----cCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 01233566677788899999 99999877653
No 297
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.48 E-value=0.00095 Score=70.54 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
-+|+|||||+.|+-+|..|++. |.+|+|+++..... .+
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~---------------------- 220 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL----GFDVTVAVRSIPLR----------------GF---------------------- 220 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCcccc----------------cC----------------------
Confidence 4899999999999999999996 99999998632110 00
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
-..+.+.+.+.+++.| ++++.+++++.++.
T Consensus 221 ----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~v~~--------------- 250 (499)
T PTZ00052 221 ----------------------------------DRQCSEKVVEYMKEQG-TLFLEGVVPINIEK--------------- 250 (499)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCeEEEEEE---------------
Confidence 0113345666666777 99999999998875
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
.++.+.+.+.+|+++.+|. |.|.|....+.
T Consensus 251 -----~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 251 -----MDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred -----cCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 2234567777888899999 99999877653
No 298
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.001 Score=60.03 Aligned_cols=117 Identities=16% Similarity=0.126 Sum_probs=77.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhh
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH 133 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~ 133 (514)
...+|+|||.||++-++|+.++++ .++.+|||-.-.-+ ...|..|...+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaara----elkPllfEG~~~~~-----------i~pGGQLtTTT---------------- 55 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARA----ELKPLLFEGMMANG-----------IAPGGQLTTTT---------------- 55 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhc----ccCceEEeeeeccC-----------cCCCceeeeee----------------
Confidence 445899999999999999999997 78999999543210 00011111000
Q ss_pred hccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCC
Q 010225 134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP 213 (514)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~ 213 (514)
+...++..+- -+.-.+|...++++..+.| .+|+.. .|.+++.
T Consensus 56 ---------------------~veNfPGFPd--gi~G~~l~d~mrkqs~r~G-t~i~tE-tVskv~~------------- 97 (322)
T KOG0404|consen 56 ---------------------DVENFPGFPD--GITGPELMDKMRKQSERFG-TEIITE-TVSKVDL------------- 97 (322)
T ss_pred ---------------------ccccCCCCCc--ccccHHHHHHHHHHHHhhc-ceeeee-ehhhccc-------------
Confidence 0001111111 1455779999999999988 777776 5777765
Q ss_pred ccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 214 SATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 214 ~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
......+.. |...+.||. |.|+|+..
T Consensus 98 -------sskpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 98 -------SSKPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred -------cCCCeEEEe-cCCceeeeeEEEecccce
Confidence 446666665 455699999 99999754
No 299
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.47 E-value=0.00098 Score=68.52 Aligned_cols=99 Identities=21% Similarity=0.305 Sum_probs=76.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||+|++|+.+|..|++. |++|+++|+.+.+.. .+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~----G~~v~l~e~~~~~~~---------------~~~-------------------- 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR----GKKVTLIEAADRLGG---------------QLL-------------------- 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcccccch---------------hhh--------------------
Confidence 46999999999999999999996 999999999986510 000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. ..+...+.+.++..| ++++++.++.+++.
T Consensus 177 ----------------------------------~-~~~~~~~~~~l~~~g-i~~~~~~~~~~i~~-------------- 206 (415)
T COG0446 177 ----------------------------------D-PEVAEELAELLEKYG-VELLLGTKVVGVEG-------------- 206 (415)
T ss_pred ----------------------------------h-HHHHHHHHHHHHHCC-cEEEeCCceEEEEc--------------
Confidence 0 235566777777777 99999999999976
Q ss_pred cccccccCCeeE---EEeCCCcEEEeeE-EEecCCCch
Q 010225 215 ATTLFTKGHLAK---LDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 215 ~~~~~~~~~~~~---v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
..+... +...++..+.+|+ +.+.|....
T Consensus 207 ------~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 207 ------KGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ------ccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 222222 5667888899999 999987663
No 300
>PRK14694 putative mercuric reductase; Provisional
Probab=97.47 E-value=0.0011 Score=69.70 Aligned_cols=97 Identities=15% Similarity=0.272 Sum_probs=71.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|++. |.+|+|+++..... ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~----g~~Vtlv~~~~~l~----------------~~--------------------- 216 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARL----GSRVTVLARSRVLS----------------QE--------------------- 216 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEECCCCCC----------------CC---------------------
Confidence 35899999999999999999996 89999998643110 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
...+...+.+.+++.| ++++++++|++++.
T Consensus 217 -----------------------------------~~~~~~~l~~~l~~~G-I~v~~~~~v~~i~~-------------- 246 (468)
T PRK14694 217 -----------------------------------DPAVGEAIEAAFRREG-IEVLKQTQASEVDY-------------- 246 (468)
T ss_pred -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence 0123345666666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.++ ++.+|. |.|.|.....
T Consensus 247 ------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 247 ------NGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred ------cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 234455665444 699999 9999987765
No 301
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.46 E-value=0.00012 Score=80.72 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=32.6
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
....+|+||||||||+++|+.|++. |++|+|+|+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~----Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRS----GHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhC----CCeEEEEcccc
Confidence 3567999999999999999999995 99999999864
No 302
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.45 E-value=0.00014 Score=75.77 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...++|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~----G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA----GHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence 3568999999999999999999996 9999999998755
No 303
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.45 E-value=0.0011 Score=69.11 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=71.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||++|+-+|..|.+. |.+|+++++.+..- +.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-------------------~~------------------ 187 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHL----GKNVRIIQLEDRIL-------------------PD------------------ 187 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCcEEEEeCCcccC-------------------ch------------------
Confidence 35899999999999999999986 89999998776320 00
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. . ...+.+.+.+.+++.| ++++++++|++++.
T Consensus 188 ------------------~--------------~-~~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~-------------- 219 (444)
T PRK09564 188 ------------------S--------------F-DKEITDVMEEELRENG-VELHLNEFVKSLIG-------------- 219 (444)
T ss_pred ------------------h--------------c-CHHHHHHHHHHHHHCC-CEEEcCCEEEEEec--------------
Confidence 0 0 1224556777777777 99999999999954
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCch
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR 248 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~ 248 (514)
++....+..+ +.++.||+ |.|.|....
T Consensus 220 ------~~~~~~v~~~-~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 220 ------EDKVEGVVTD-KGEYEADVVIVATGVKPN 247 (444)
T ss_pred ------CCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence 2233344444 44699999 999997654
No 304
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.43 E-value=0.00014 Score=79.50 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=34.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+||||||+||++|..|++. |++|+|||+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~----G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN----GVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 457999999999999999999996 9999999998765
No 305
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.43 E-value=0.00017 Score=75.75 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...++|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~----G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARA----GHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCCC
Confidence 3457999999999999999999996 9999999998865
No 306
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.42 E-value=0.00014 Score=74.52 Aligned_cols=35 Identities=31% Similarity=0.564 Sum_probs=32.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+++||+|||||++|+++|+.|++. |++|+|||++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~----g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEA----GKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEECCC
Confidence 368999999999999999999996 99999999874
No 307
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.00018 Score=68.55 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=34.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
.+|++|||+|++|+.+|..|+++ |.+|+|+||++-++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~----gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL----GKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc----CCEEEEEeccccCC
Confidence 37999999999999999999997 99999999999875
No 308
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.40 E-value=0.00017 Score=82.09 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=34.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
...+|+|||||||||++|..|++. |++|+|||+.+.++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~----G~~VtV~E~~~~~G 466 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY----GVDVTVYEALHVVG 466 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCc
Confidence 457999999999999999999996 99999999987663
No 309
>PRK14727 putative mercuric reductase; Provisional
Probab=97.40 E-value=0.0015 Score=68.78 Aligned_cols=97 Identities=16% Similarity=0.243 Sum_probs=72.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
.+|+|||||+.|+-+|..|++. |.+|+|+++..... .+.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~l~----------------~~d--------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL----GSRVTILARSTLLF----------------RED--------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCEEEEEEcCCCCC----------------cch---------------------
Confidence 5899999999999999999986 99999998743110 000
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
..+...+.+.+++.| ++++++++|++++.
T Consensus 228 -----------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------- 256 (479)
T PRK14727 228 -----------------------------------PLLGETLTACFEKEG-IEVLNNTQASLVEH--------------- 256 (479)
T ss_pred -----------------------------------HHHHHHHHHHHHhCC-CEEEcCcEEEEEEE---------------
Confidence 113345666667777 99999999999975
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
.++.+.+...++ ++.+|. |.|.|....+.
T Consensus 257 -----~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 257 -----DDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred -----eCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 234566666555 589999 99999987663
No 310
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.39 E-value=0.00016 Score=73.25 Aligned_cols=34 Identities=35% Similarity=0.647 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+||+|||||++|+++|+.|++. |++|+|+|++..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~----g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEA----GKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHC----CCCEEEEeCCCc
Confidence 6999999999999999999996 999999999863
No 311
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.36 E-value=0.00018 Score=75.66 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
|||+|||+||+|+++|+.|++. |++|+|||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~----g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA----GLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC----CCeEEEEeccCccC
Confidence 6999999999999999999996 99999999998775
No 312
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.35 E-value=0.00021 Score=79.42 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=34.1
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....+|+||||||||+++|..|++. |++|+|||+.+.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~----G~~V~v~e~~~~~ 466 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR----GYDVTVFEALHEI 466 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 3467999999999999999999996 9999999997655
No 313
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.34 E-value=0.00024 Score=74.33 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...++|+||||||+|+++|..|++. |++|+|||+.+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~----g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK----GYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCC
Confidence 3457999999999999999999996 9999999998755
No 314
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.33 E-value=0.0016 Score=67.54 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 173 l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
+.+.+.+.+++.| |+++++++|+++.. + .|.+++|+++.+|+ |-|.|...
T Consensus 230 ~~~~~~~~L~~~g-V~v~~~~~v~~v~~----------------------~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 230 LRKYGQRRLRRLG-VDIRTKTAVKEVLD----------------------K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHCC-CEEEeCCeEEEEeC----------------------C--EEEECCCCEEEccEEEEccCCCC
Confidence 4455666677777 99999999999853 3 35577899999999 99999543
No 315
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.32 E-value=0.0015 Score=68.54 Aligned_cols=34 Identities=18% Similarity=0.441 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.+|+|||||+.|+-+|..|++. |.+|+|+|+.+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~ 208 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL----GSEVDVVEMFDQ 208 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCC
Confidence 5899999999999999999996 999999998874
No 316
>PRK13748 putative mercuric reductase; Provisional
Probab=97.31 E-value=0.002 Score=69.30 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+++..... ...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~----------------~~d-------------------- 309 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARL----GSKVTILARSTLFF----------------RED-------------------- 309 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCcccc----------------ccC--------------------
Confidence 35899999999999999999996 99999999743210 000
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
..+...+.+.+++.| ++++++++|++++.
T Consensus 310 ------------------------------------~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~-------------- 338 (561)
T PRK13748 310 ------------------------------------PAIGEAVTAAFRAEG-IEVLEHTQASQVAH-------------- 338 (561)
T ss_pred ------------------------------------HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------
Confidence 112244555666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.++ ++.+|. |.|.|.....
T Consensus 339 ------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 339 ------VDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred ------cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 234556666555 599999 9999987665
No 317
>PTZ00058 glutathione reductase; Provisional
Probab=97.31 E-value=0.0018 Score=69.03 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=72.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
..+|+|||||..|+-+|..|++. |.+|+|+|+.+.+. .
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~----G~~Vtli~~~~~il--------------------------~------------ 274 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRL----GAESYIFARGNRLL--------------------------R------------ 274 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCcEEEEEeccccc--------------------------c------------
Confidence 46899999999999999999996 99999999877330 0
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
. ++ .++.+.+.+.+++.| ++++++++|.+++.
T Consensus 275 --~------------------------------~d-~~i~~~l~~~L~~~G-V~i~~~~~V~~I~~-------------- 306 (561)
T PTZ00058 275 --K------------------------------FD-ETIINELENDMKKNN-INIITHANVEEIEK-------------- 306 (561)
T ss_pred --c------------------------------CC-HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence 0 00 123344556666666 99999999999975
Q ss_pred cccccccCCeeEEEeCCC-cEEEeeE-EEecCCCchh
Q 010225 215 ATTLFTKGHLAKLDLSDG-TSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g-~~~~ad~-V~AdG~~S~v 249 (514)
++++.+.+.+.++ +++.+|. |.|.|....+
T Consensus 307 -----~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 307 -----VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred -----cCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence 0112355554444 4799999 9999976554
No 318
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00066 Score=64.85 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=68.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhh---HHHHHHcCCcH-HH
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT---ISFFKEIGAWQ-YV 130 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~l~~lgl~~-~~ 130 (514)
...|-|||||.||.-+|+.+++. |++|.|+|-++.-..... ....-...+..++ ...-...|+.. ++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~----Gv~V~L~EMRp~k~TpaH-----~td~fAELVCSNSlr~~~~~navGlLk~EM 73 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR----GVPVILYEMRPVKGTPAH-----KTDNFAELVCSNSLRSDALTNAVGLLKAEM 73 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc----CCcEEEEEcccccCCCcc-----cccchhhheeccccccchhhhhhHHHHHHH
Confidence 34699999999999999999995 999999998764321110 0000001111111 11111223221 11
Q ss_pred HhhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEe
Q 010225 131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA 199 (514)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~ 199 (514)
...+. +-+...+.. ..+--....++|..|.+.+-+.+++++.|+|+.+ +|+.+-
T Consensus 74 R~lgS-----lii~~Ad~~---------~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~iP 127 (439)
T COG1206 74 RLLGS-----LIIEAADKH---------RVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEIP 127 (439)
T ss_pred HHhhh-----HHhhhhhhc---------cCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccCC
Confidence 11111 000000000 0011224679999999999999999998998887 787773
No 319
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.27 E-value=0.0022 Score=67.47 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
-+|+|||||+.|+-+|..|++. |.+|+|+++..... .+
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~---------------------- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLR----------------GF---------------------- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh----CCcEEEEEeccccc----------------cc----------------------
Confidence 4799999999999999999996 89999998632110 00
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
-.++.+.+.+.+++.| ++++++++++.+..
T Consensus 219 ----------------------------------d~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------- 248 (484)
T TIGR01438 219 ----------------------------------DQDCANKVGEHMEEHG-VKFKRQFVPIKVEQ--------------- 248 (484)
T ss_pred ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCceEEEEEE---------------
Confidence 0123345566666666 99999999999875
Q ss_pred ccccccCCeeEEEeCCC---cEEEeeE-EEecCCCchh
Q 010225 216 TTLFTKGHLAKLDLSDG---TSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g---~~~~ad~-V~AdG~~S~v 249 (514)
.++.+.+.+.++ .++.+|. |.|.|....+
T Consensus 249 -----~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 249 -----IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred -----cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 223455666555 3799999 9999976554
No 320
>PLN02546 glutathione reductase
Probab=97.24 E-value=0.0027 Score=67.75 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=73.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhh
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR 134 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~ 134 (514)
.-+|+|||||..|+-+|..|++. |.+|+|+|+.+.+. . .
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~----g~~Vtlv~~~~~il----------~-----~---------------------- 290 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGL----KSDVHVFIRQKKVL----------R-----G---------------------- 290 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeccccc----------c-----c----------------------
Confidence 35899999999999999999986 89999999876330 0 0
Q ss_pred ccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCc
Q 010225 135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS 214 (514)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~ 214 (514)
+ -..+...+.+.+++.| ++++.++++++++.
T Consensus 291 -------------------~---------------d~~~~~~l~~~L~~~G-V~i~~~~~v~~i~~-------------- 321 (558)
T PLN02546 291 -------------------F---------------DEEVRDFVAEQMSLRG-IEFHTEESPQAIIK-------------- 321 (558)
T ss_pred -------------------c---------------CHHHHHHHHHHHHHCC-cEEEeCCEEEEEEE--------------
Confidence 0 0223455666666777 99999999999965
Q ss_pred cccccccCCeeEEEeCCCcEEEeeE-EEecCCCchhh
Q 010225 215 ATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRVR 250 (514)
Q Consensus 215 ~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~vR 250 (514)
+.++.+.+...++....+|. |.|.|......
T Consensus 322 -----~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 322 -----SADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred -----cCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 11234556665555455899 99999877663
No 321
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.24 E-value=0.0011 Score=66.70 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc-EEEeeE-EEecCCC-ch
Q 010225 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKL-VGADGGK-SR 248 (514)
Q Consensus 172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~-V~AdG~~-S~ 248 (514)
.+.++..+.++++| |+|+.++.|++++. +.+++ .+|. ++.|+. |=|.|.. |+
T Consensus 210 ~l~~~a~~~L~~~G-V~v~l~~~Vt~v~~----------------------~~v~~--~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 210 KLSKYAERALEKLG-VEVLLGTPVTEVTP----------------------DGVTL--KDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHHHHHHCC-CEEEcCCceEEECC----------------------CcEEE--ccCCeeEecCEEEEcCCCcCCh
Confidence 35556667777777 99999999999965 44554 4555 599999 9999954 44
Q ss_pred hhhh
Q 010225 249 VREL 252 (514)
Q Consensus 249 vR~~ 252 (514)
+-+.
T Consensus 265 ~~~~ 268 (405)
T COG1252 265 LLKD 268 (405)
T ss_pred hhhh
Confidence 4444
No 322
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.22 E-value=0.00038 Score=75.96 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+||||||+|+++|+.|++. |++|+|||+.+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~----G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK----GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence 457999999999999999999996 9999999998865
No 323
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.20 E-value=0.013 Score=59.93 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=35.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
.++=|||+|+|+|++|..|-|-+.-+|-+|+|+|+.+.++.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 46889999999999999999875556889999999987753
No 324
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.20 E-value=0.00045 Score=72.35 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=33.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+||||||+|+++|..|++. |++|+|+|+.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~----G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA----GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence 457999999999999999999996 9999999998865
No 325
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.14 E-value=0.00051 Score=74.87 Aligned_cols=37 Identities=32% Similarity=0.511 Sum_probs=34.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+||||||+||++|..|++. |++|+|||+.+.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~----G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA----GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc----CCcEEEEeCCCCC
Confidence 468999999999999999999996 9999999999866
No 326
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00049 Score=73.25 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=34.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+..++|+||||+|.+|+++|..|+.. |++|+|+|++..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~----g~~VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDA----GLSVLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCC----CCeEEEEeCCCC
Confidence 45689999999999999999999964 999999999953
No 327
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.13 E-value=0.015 Score=61.85 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=52.5
Q ss_pred EEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCe-eEEEe---CCC--cEEEeeE
Q 010225 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDL---SDG--TSLYAKL 239 (514)
Q Consensus 166 ~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~g--~~~~ad~ 239 (514)
..++...+...|.+.+.+.| ++|+++++|++++. .++. +.|++ .+| .++.|+.
T Consensus 123 g~vdp~~l~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~~~~~g~~~~i~a~~ 181 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIR--------------------EGGRVTGVKVEDHKTGEEERIEAQV 181 (516)
T ss_pred cEECHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------ECCEEEEEEEEEcCCCcEEEEEcCE
Confidence 36789999999999999998 99999999999986 2232 33443 234 3699999
Q ss_pred -EEecCCCch-hhhhhCC
Q 010225 240 -VGADGGKSR-VRELAGF 255 (514)
Q Consensus 240 -V~AdG~~S~-vR~~l~~ 255 (514)
|.|.|.|+. +.+.++.
T Consensus 182 VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 182 VINAAGIWAGRIAEYAGL 199 (516)
T ss_pred EEECCCcchHHHHHhcCC
Confidence 999999986 4445554
No 328
>PLN02785 Protein HOTHEAD
Probab=97.10 E-value=0.00059 Score=73.19 Aligned_cols=38 Identities=37% Similarity=0.650 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....||+||||||.+|+.+|..|++ +.+|+|||++..+
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-----~~~VLllE~G~~~ 89 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-----NFSVLLLERGGVP 89 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-----CCcEEEEecCCCC
Confidence 3457999999999999999999999 5899999999743
No 329
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.08 E-value=0.0047 Score=64.74 Aligned_cols=36 Identities=25% Similarity=0.618 Sum_probs=32.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRL----GVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCc
Confidence 35899999999999999999996 9999999988743
No 330
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.07 E-value=0.00056 Score=70.60 Aligned_cols=37 Identities=30% Similarity=0.388 Sum_probs=34.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+|+||||||+||++|..|+++ |++|+|+|+.+.++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~----G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRA----GHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhC----CCeEEEeCCcCCCc
Confidence 37999999999999999999997 99999999999774
No 331
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.03 E-value=0.00078 Score=67.94 Aligned_cols=37 Identities=32% Similarity=0.452 Sum_probs=33.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+|||||++|+.+|..|++. |++|+|||+.+.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~ 53 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACL----GYEVHVYDKLPEP 53 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCC
Confidence 456899999999999999999996 9999999998865
No 332
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.96 E-value=0.00098 Score=70.15 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=33.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
...+|+|||||++|+++|..|++. |++|+|||+.+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~----g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRA----GHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence 347999999999999999999996 9999999998865
No 333
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.96 E-value=0.001 Score=71.53 Aligned_cols=38 Identities=39% Similarity=0.630 Sum_probs=34.2
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....+|+||||||+||++|+.|++. |++|+|+|+.+.+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~----G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRM----GHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 3456899999999999999999996 9999999999866
No 334
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.91 E-value=0.00084 Score=71.70 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~ 93 (514)
|+||||||.+|+.+|..|++. | ++|+|||+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~----~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED----VSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccC----CCCeEEEEecCCC
Confidence 899999999999999999996 5 79999999864
No 335
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.84 E-value=0.0094 Score=64.69 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
-+|+|||||..|+-+|..|++. |.+|+|+|+.+.+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~----G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL----GSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC----CCeEEEEeccCcc
Confidence 4799999999999999999996 8999999998743
No 336
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.0014 Score=63.94 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=32.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..|+|||+||||..+|..|.+.. .+++|.|+|+.+.+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~--~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRH--PNAHVDIFEKLPVP 57 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcC--CCCeeEeeecCCcc
Confidence 38999999999999999888731 37999999999977
No 337
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.79 E-value=0.01 Score=63.10 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||||+.|+-+|..|++. |.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~----g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGI----VRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhc----CcEEEEEEeCC
Confidence 35899999999999999999986 89999999665
No 338
>PRK10262 thioredoxin reductase; Provisional
Probab=96.78 E-value=0.01 Score=58.97 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||+|..|+-+|..|++. |.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~----~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEECC
Confidence 35899999999999999999996 89999999876
No 339
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.75 E-value=0.015 Score=56.99 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||+|++|+-+|..|++. +.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~----~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRI----AKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhh----cCEEEEEEeCc
Confidence 35899999999999999999986 88999999865
No 340
>PRK13984 putative oxidoreductase; Provisional
Probab=96.72 E-value=0.0019 Score=70.16 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=34.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....+|+|||+|++|+++|..|++. |++|+|||+.+.+
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~----G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM----GYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence 3467899999999999999999996 9999999998865
No 341
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.71 E-value=0.0034 Score=63.15 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=35.6
Q ss_pred CcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhh
Q 010225 393 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 431 (514)
Q Consensus 393 ~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~ 431 (514)
.++.++|+..-.--|..|.-+..|...++.++..+...+
T Consensus 337 pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 337 PGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999998887754
No 342
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.64 E-value=0.01 Score=60.19 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCc
Q 010225 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKS 247 (514)
Q Consensus 174 ~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S 247 (514)
...+.+.+++.+ ++++.+++|++++. + .+.+.+|.++.+|+ |.|.|...
T Consensus 194 ~~~~~~~l~~~g-V~v~~~~~v~~i~~----------------------~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 194 RRLVLRLLARRG-IEVHEGAPVTRGPD----------------------G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHCC-CEEEeCCeeEEEcC----------------------C--eEEeCCCCEEecCEEEEccCCCh
Confidence 345556666666 99999999998853 2 46667888999999 99999654
No 343
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.62 E-value=0.018 Score=58.27 Aligned_cols=104 Identities=28% Similarity=0.367 Sum_probs=80.0
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHh
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ 132 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~ 132 (514)
.....|++||||-.|+-+|..|.-. +++|++|++.+.+- ++ ++
T Consensus 211 ~~~~~vV~vG~G~ig~Evaa~l~~~----~~~VT~V~~e~~~~-------------------~~---lf----------- 253 (478)
T KOG1336|consen 211 QLGGKVVCVGGGFIGMEVAAALVSK----AKSVTVVFPEPWLL-------------------PR---LF----------- 253 (478)
T ss_pred ccCceEEEECchHHHHHHHHHHHhc----CceEEEEccCccch-------------------hh---hh-----------
Confidence 3466799999999999999988884 89999999988550 00 00
Q ss_pred hhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCC
Q 010225 133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212 (514)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~ 212 (514)
-..+.+.+.+..++.+ ++++.++.+.+++. +
T Consensus 254 -------------------------------------~~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~-----------~ 284 (478)
T KOG1336|consen 254 -------------------------------------GPSIGQFYEDYYENKG-VKFYLGTVVSSLEG-----------N 284 (478)
T ss_pred -------------------------------------hHHHHHHHHHHHHhcC-eEEEEecceeeccc-----------C
Confidence 1224455666667777 99999999999976 1
Q ss_pred CccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 213 PSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
+ .++.+.|.+.||+++.||+ |...|+.+.+
T Consensus 285 ~-------~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 285 S-------DGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred C-------CCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 1 3477889999999999999 9999987655
No 344
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0022 Score=70.17 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=37.3
Q ss_pred cCCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 49 FTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 49 ~~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
++.......|+|||.||+||++|-.|-+. |+-|+|+||.+.++
T Consensus 1779 pp~~rtg~~vaiigsgpaglaaadqlnk~----gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNKA----GHTVTVYERSDRVG 1821 (2142)
T ss_pred CcccccCcEEEEEccCchhhhHHHHHhhc----CcEEEEEEecCCcC
Confidence 33344568999999999999999999998 99999999999773
No 345
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.56 E-value=0.0027 Score=66.59 Aligned_cols=40 Identities=35% Similarity=0.539 Sum_probs=36.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....||.||||||-||+.+|..|++. ..++|+|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn---~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN---PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC---CCceEEEEecCCCC
Confidence 45679999999999999999999997 47999999998876
No 346
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.55 E-value=0.0049 Score=61.63 Aligned_cols=143 Identities=16% Similarity=0.122 Sum_probs=73.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (514)
......|+|||||.++.-++..|.+.+ ...+|+++=|+...... +..........|...+.+-.+.. +..
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~--~~~~V~~i~R~~~~~~~------d~s~f~ne~f~P~~v~~f~~l~~--~~R 256 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRG--PEAKVTWISRSPGFFPM------DDSPFVNEIFSPEYVDYFYSLPD--EER 256 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH---TTEEEEEEESSSS-EB----------CCHHGGGSHHHHHHHHTS-H--HHH
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCC--CCcEEEEEECCCccCCC------ccccchhhhcCchhhhhhhcCCH--HHH
Confidence 456789999999999999999998852 12589999998865211 11111122455665555554432 222
Q ss_pred hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHH----HHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCc
Q 010225 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL----HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI 207 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l----~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~ 207 (514)
......... . .. -.|+...+ ...+.+.+...+.++++.+++|++++.
T Consensus 257 ~~~l~~~~~-----------~---------ny--~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~------- 307 (341)
T PF13434_consen 257 RELLREQRH-----------T---------NY--GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ------- 307 (341)
T ss_dssp HHHHHHTGG-----------G---------TS--SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE-------
T ss_pred HHHHHHhHh-----------h---------cC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE-------
Confidence 211100000 0 00 01233322 222233444444589999999999987
Q ss_pred ccCCCCccccccccCCeeEEEeCC-----CcEEEeeE-EEecCC
Q 010225 208 SVDSTPSATTLFTKGHLAKLDLSD-----GTSLYAKL-VGADGG 245 (514)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~v~~~~-----g~~~~ad~-V~AdG~ 245 (514)
+.++.+.+.+.+ ..++.+|. |.|+|.
T Consensus 308 ------------~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 308 ------------DGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp ------------ES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred ------------CCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 122478877765 23699999 999994
No 347
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.35 E-value=0.023 Score=60.41 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=31.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..+|+|||||..|+-+|..|++. +.+|+|+++++.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~----~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGI----VKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEEECcc
Confidence 35899999999999999999996 899999987763
No 348
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.09 E-value=0.02 Score=57.77 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~ 92 (514)
..|+|||+|+.|+-+|..|.+. |.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~----g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL----GAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc----CCCeEEEEeecc
Confidence 4799999999999999999875 776 99998765
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.96 E-value=0.022 Score=57.59 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=36.0
Q ss_pred CCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 184 TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 184 ~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
.+ +++++++.|+.++. ..-+|.+.+|+++.++. |.|+|. |+.
T Consensus 140 ~g-Ie~~~~t~v~~~D~----------------------~~K~l~~~~Ge~~kys~LilATGs-~~~ 182 (478)
T KOG1336|consen 140 KG-IELILGTSVVKADL----------------------ASKTLVLGNGETLKYSKLIIATGS-SAK 182 (478)
T ss_pred cC-ceEEEcceeEEeec----------------------cccEEEeCCCceeecceEEEeecC-ccc
Confidence 35 99999999999987 55678888999999999 999999 443
No 350
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.93 E-value=0.017 Score=61.49 Aligned_cols=106 Identities=21% Similarity=0.367 Sum_probs=76.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHHhhhc
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~ 135 (514)
...+|||||.-||=+|..|.+. |.+|+|++=.+.. ++ ..+...
T Consensus 146 ~~avVIGGGLLGlEaA~~L~~~----Gm~~~Vvh~~~~l-----------------------Me--------rQLD~~-- 188 (793)
T COG1251 146 KKAVVIGGGLLGLEAARGLKDL----GMEVTVVHIAPTL-----------------------ME--------RQLDRT-- 188 (793)
T ss_pred CCcEEEccchhhhHHHHHHHhC----CCceEEEeecchH-----------------------HH--------HhhhhH--
Confidence 3579999999999999999996 9999999866532 00 011110
Q ss_pred cCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCcc
Q 010225 136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA 215 (514)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~ 215 (514)
-...|...+++.| ++++.++..+.+..
T Consensus 189 -------------------------------------ag~lL~~~le~~G-i~~~l~~~t~ei~g--------------- 215 (793)
T COG1251 189 -------------------------------------AGRLLRRKLEDLG-IKVLLEKNTEEIVG--------------- 215 (793)
T ss_pred -------------------------------------HHHHHHHHHHhhc-ceeecccchhhhhc---------------
Confidence 1145666667777 99999887777754
Q ss_pred ccccccCCeeEEEeCCCcEEEeeE-EEecCCCch--hhhhhCCC
Q 010225 216 TTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSR--VRELAGFK 256 (514)
Q Consensus 216 ~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~--vR~~l~~~ 256 (514)
.+....++|+||..+.||+ |-|+|+.-. +.+..|+.
T Consensus 216 -----~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGla 254 (793)
T COG1251 216 -----EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLA 254 (793)
T ss_pred -----CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcC
Confidence 3466789999999999999 999997543 33444443
No 351
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.78 E-value=0.75 Score=48.64 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=29.2
Q ss_pred cCcEEEEcccccccCCcccccchhhhHHHHHHHHHHHH
Q 010225 392 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 429 (514)
Q Consensus 392 ~~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~ 429 (514)
-.++.|+|+.+|+ |.|+..++..+..+|+.|.+
T Consensus 458 i~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 458 VKGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence 3689999999876 89999999999999998864
No 352
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.73 E-value=0.038 Score=55.09 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCc--EEEeeE-EEecCCCc
Q 010225 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKL-VGADGGKS 247 (514)
Q Consensus 173 l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~-V~AdG~~S 247 (514)
+..+..+...+.+ +++..++.|..+.. ..+.+...||+ ++.+-+ |-|+|...
T Consensus 275 l~~yae~~f~~~~-I~~~~~t~Vk~V~~----------------------~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 275 LVEYAENQFVRDG-IDLDTGTMVKKVTE----------------------KTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHHHHHhhhcc-ceeecccEEEeecC----------------------cEEEEEcCCCceeeecceEEEecCCCCC
Confidence 3444455555556 99999999999954 66777777775 688899 99999543
No 353
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.67 E-value=0.047 Score=53.70 Aligned_cols=36 Identities=14% Similarity=0.410 Sum_probs=31.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+...+|||||..||-++.--.+. |-+|+++|-.+..
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rL----GseVT~VEf~~~i 246 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRL----GSEVTVVEFLDQI 246 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhc----CCeEEEEEehhhh
Confidence 35799999999999999999998 9999999977654
No 354
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.63 E-value=0.25 Score=48.13 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=33.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
....||.+|||||-.|++.|...+.+ |.+|.|+|..-
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~----GAkv~l~E~~f 53 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASH----GAKVALCELPF 53 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhc----CceEEEEecCC
Confidence 45689999999999999999999997 99999999773
No 355
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=95.62 E-value=0.055 Score=56.47 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||||..|+-+|..|.+. |.+|+|++++.
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~----G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRL----GAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEeecC
Confidence 35899999999999999999997 89999999875
No 356
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.57 E-value=0.016 Score=51.01 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|+|+|||..|.++|..|++. |++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~----g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN----GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC----TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc----CCEEEEEeccH
Confidence 589999999999999999996 99999999875
No 357
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.013 Score=54.95 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=46.6
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA 126 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl 126 (514)
++++|||+|..|.++|..|.+. |++|+++|+++.....- ............+......|+++|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~----g~~Vv~Id~d~~~~~~~---~~~~~~~~~v~gd~t~~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE----GHNVVLIDRDEERVEEF---LADELDTHVVIGDATDEDVLEEAGI 64 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC----CCceEEEEcCHHHHHHH---hhhhcceEEEEecCCCHHHHHhcCC
Confidence 3699999999999999999996 99999999988552110 0001333445566667788888875
No 358
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.46 E-value=0.083 Score=55.29 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
..+|+|||||..|+-+|..|.+. |. +|+|+++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~----G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRL----GAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence 46899999999999999999986 77 899999865
No 359
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.25 E-value=0.022 Score=51.35 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.|.|||+|..|...|..++.+ |++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA----GYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT----TSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence 489999999999999999997 999999999774
No 360
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.017 Score=55.57 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=31.7
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~ 90 (514)
..+||.+|||||-+||++|-..++. |.+|.++|-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~----G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL----GAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc----CCcEEEEee
Confidence 3579999999999999999999998 999999996
No 361
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=94.94 E-value=0.029 Score=57.57 Aligned_cols=41 Identities=34% Similarity=0.503 Sum_probs=31.6
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
|+.+|||+|+|-|..-+.+|..|++. |.+|+.+|+++..+.
T Consensus 1 m~~~yDviI~GTGl~esila~als~~----GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRS----GKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhc----CCEEEecCCCCCcCC
Confidence 35689999999999999999999997 999999999998763
No 362
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=94.80 E-value=2.1 Score=43.84 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCC-----CCCCce--EEeChhhHHHHHHcCCcHHH
Q 010225 69 ALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKED-----PPDPRV--STVTPATISFFKEIGAWQYV 130 (514)
Q Consensus 69 ~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~l~~lgl~~~~ 130 (514)
++|+.|+++ |++|+|+|+.+.++......... ...+.- ....+...++++++|+...+
T Consensus 1 ~AA~~L~~~----G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 65 (419)
T TIGR03467 1 SAAVELARA----GARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRL 65 (419)
T ss_pred ChHHHHHhC----CCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhh
Confidence 478999996 99999999999887554322111 111111 12346778888888875543
No 363
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.78 E-value=0.14 Score=50.96 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCC--Cc
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGG--KS 247 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~--~S 247 (514)
..|.++-.+.+++.| |.|+-|..|.++.. .-..+.+.+.||.++..|+ |.|.|. +|
T Consensus 393 eyls~wt~ekir~~G-V~V~pna~v~sv~~--------------------~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGG-VDVRPNAKVESVRK--------------------CCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcC-ceeccchhhhhhhh--------------------hccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 345667777787766 99999999999976 3466888999999999999 999995 55
Q ss_pred hhhhhhCC
Q 010225 248 RVRELAGF 255 (514)
Q Consensus 248 ~vR~~l~~ 255 (514)
-+...-|.
T Consensus 452 ela~~sgL 459 (659)
T KOG1346|consen 452 ELAEASGL 459 (659)
T ss_pred hhcccccc
Confidence 55444443
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.43 E-value=0.23 Score=52.15 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=28.4
Q ss_pred CcEEEEcccccccCCcccccchhhhHHHHHHHHHHHHhhhc
Q 010225 393 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 433 (514)
Q Consensus 393 ~~v~LvGDAAh~~~P~~GqG~~~al~da~~La~~l~~~~~~ 433 (514)
.+|+.+||+++. | .-+..|+.++..+|..|.+.+..
T Consensus 431 ~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 431 PKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhc
Confidence 579999999872 1 13567999999999999988764
No 365
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.16 E-value=0.062 Score=46.77 Aligned_cols=31 Identities=26% Similarity=0.567 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
|+|+|+|-.|+..|..|++. |++|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~----g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA----GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT----TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC----CCceEEEEccc
Confidence 78999999999999999996 99999999876
No 366
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.15 E-value=0.065 Score=53.03 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||+|..|.++|..|++. |++|+++.|+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~----g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA----GFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence 35799999999999999999997 99999998865
No 367
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.97 E-value=0.081 Score=55.80 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||+|++|+++|..|++. |++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~----G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL----GARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence 34799999999999999999985 99999999765
No 368
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.93 E-value=0.07 Score=52.01 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.|.|||+|..|...|..|+++ |++|+++|+.+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA----GVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC----CCEEEEEECCHHH
Confidence 799999999999999999997 9999999988744
No 369
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.88 E-value=0.063 Score=56.25 Aligned_cols=34 Identities=29% Similarity=0.291 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.|+|||.|++|+++|..|.+. |++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~----G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ----GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC----CCEEEEECCCCch
Confidence 589999999999999999996 9999999988754
No 370
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.85 E-value=0.058 Score=53.22 Aligned_cols=33 Identities=36% Similarity=0.619 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|.|||+|..|.++|..|++. |++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~----G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA----GHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC----CCeeEEEeCCHH
Confidence 699999999999999999996 999999998874
No 371
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.82 E-value=0.057 Score=48.88 Aligned_cols=34 Identities=35% Similarity=0.490 Sum_probs=27.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
++|+|||.|-.||.+|..|++. |++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~----G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK----GHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT----TSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhC----CCEEEEEeCChH
Confidence 3699999999999999999996 999999998874
No 372
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=93.63 E-value=0.071 Score=51.14 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=31.7
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..+.+.|+|||||-+|++.|..+.+.- ..-+|.|+|....
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl--~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKL--GSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhc--CCCceEEecchhh
Confidence 456799999999999999999888741 1237999997763
No 373
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.57 E-value=0.098 Score=51.63 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..|+|||+|..|...|..++.+ |++|+++|..+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a----G~~V~l~D~~~~~ 42 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH----GLDVVAWDPAPGA 42 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999996 9999999988743
No 374
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.49 E-value=0.11 Score=42.08 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+...|+|||||..|..-+..|.+. |-+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~----gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA----GAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC----TBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEECCch
Confidence 356899999999999999999997 99999998763
No 375
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.34 E-value=0.097 Score=51.22 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.+|+|||+|..|...|..|++. |++|+++|+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~----G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA----GYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence 4699999999999999999996 999999998763
No 376
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.31 E-value=0.087 Score=55.23 Aligned_cols=36 Identities=25% Similarity=0.546 Sum_probs=32.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..+|+|||||++|+-+|..|++. |.+|+|+|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASL----GSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCCC
Confidence 35899999999999999999996 8999999998754
No 377
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.31 E-value=0.093 Score=51.71 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.++|+|||+|..|...|..|++. |.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~----G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA----GLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC----CCCeEEEEech
Confidence 35799999999999999999997 89999999864
No 378
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.13 E-value=0.099 Score=51.04 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..|+|||+|..|.++|..|++. |++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~----G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH----GFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCH
Confidence 4699999999999999999996 99999999876
No 379
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.96 E-value=0.16 Score=44.58 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEc
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIID 89 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE 89 (514)
....|+|||||.+|...|..|.+. |.+|+||.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~----ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT----GAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEc
Confidence 346899999999999999999986 99999995
No 380
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.80 E-value=0.11 Score=44.26 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
++|+|+|+.+.++|..++.. |++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~l----g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL----GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC----TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC----CCEEEEEcCCcc
Confidence 58999999999999999998 999999998865
No 381
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.78 E-value=0.65 Score=50.03 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEE---eCCCc--EEEeeE-EEecC
Q 010225 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKL-VGADG 244 (514)
Q Consensus 171 ~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~--~~~ad~-V~AdG 244 (514)
..+...|.+.+.+.+ ++|+.++.++++..+ . ++..+.+. ..+|+ .+.|+. |.|+|
T Consensus 126 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~~---------~---------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNG-TTFLNEWYAVDLVKN---------Q---------DGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccC-CEEEECcEEEEEEEc---------C---------CCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 578889999888776 999999999999861 0 12333343 34565 588999 99999
Q ss_pred CCchh
Q 010225 245 GKSRV 249 (514)
Q Consensus 245 ~~S~v 249 (514)
..+.+
T Consensus 187 G~~~~ 191 (570)
T PRK05675 187 GAGRI 191 (570)
T ss_pred Ccccc
Confidence 98864
No 382
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.68 E-value=0.41 Score=48.98 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
++|||+|++|+++|..|.+.. .+.+++++.+....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~--~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL--LAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC--CCCCEEEEeCCCCC
Confidence 589999999999999888853 35678877777654
No 383
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.66 E-value=0.11 Score=50.76 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|+|||+|..|...|..|++. |++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~----G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS----GFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC----CCcEEEEeCCHH
Confidence 599999999999999999996 999999998863
No 384
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.64 E-value=0.35 Score=48.16 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=81.4
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceEEeChhhHHHHHHcCCcHHHH
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ 131 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~ 131 (514)
.+.....+|||||-+..+++...... +.+.+|.+|--.+..- +.-.|-+.+++= .|-
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~--da~A~vl~iseepelP---------------YmRPPLSKELW~-~~d----- 231 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSN--DATAKVLMISEEPELP---------------YMRPPLSKELWW-YGD----- 231 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccC--CCCceEEeeccCccCc---------------ccCCCcchhcee-cCC-----
Confidence 35567899999999887777665543 1367888887766541 111122211110 000
Q ss_pred hhhccCcceEEEEeCCCcceeeeccCCCCCcccEEEEehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCC
Q 010225 132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS 211 (514)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~ 211 (514)
. .....+.|....+.....| ..+.++.++..+|... . +|+|-+..|.+|+.|..
T Consensus 232 p---n~~k~lrfkqwsGkeRsif------fepd~FfvspeDLp~~-----~-nGGvAvl~G~kvvkid~----------- 285 (659)
T KOG1346|consen 232 P---NSAKKLRFKQWSGKERSIF------FEPDGFFVSPEDLPKA-----V-NGGVAVLRGRKVVKIDE----------- 285 (659)
T ss_pred C---ChhhheeecccCCccceeE------ecCCcceeChhHCccc-----c-cCceEEEeccceEEeec-----------
Confidence 0 0122222222222211111 2344577888877653 2 35699999999999965
Q ss_pred CCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 212 TPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
..-.|.++||.+|.+|- ..|+|..-+-
T Consensus 286 -----------~d~~V~LnDG~~I~YdkcLIATG~~Pk~ 313 (659)
T KOG1346|consen 286 -----------EDKKVILNDGTTIGYDKCLIATGVRPKK 313 (659)
T ss_pred -----------ccCeEEecCCcEeehhheeeecCcCccc
Confidence 33456678999999999 9999987543
No 385
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.61 E-value=0.16 Score=45.13 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+..|+|+|+|.+|..+|..|..+ |.+|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l----Ga~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL----GAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT----T-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC----CCEEEeccCCH
Confidence 357899999999999999999998 99999999765
No 386
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.13 Score=50.35 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..|+|||+|..|...|..|+++ |++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~----G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART----GYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence 3699999999999999999996 999999998773
No 387
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.42 E-value=0.21 Score=46.02 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=30.4
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|+|||||.+|..-+..|.+. |.+|+|++...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~----ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA----GAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence 34899999999999999999997 99999998654
No 388
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.30 E-value=0.15 Score=50.02 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|+|||+|-.|.++|..|++. |++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~----g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA----GHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCeEEEEECCh
Confidence 599999999999999999996 89999999854
No 389
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.29 E-value=0.14 Score=50.37 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~ 90 (514)
+|+|||+|..|.++|..|++. |++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~----g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA----GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC----CCceEEEec
Confidence 599999999999999999996 899999998
No 390
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.19 E-value=0.49 Score=48.32 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=50.2
Q ss_pred EehHHHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeE-EEeCCC--cEEEeeE-EEec
Q 010225 168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDG--TSLYAKL-VGAD 243 (514)
Q Consensus 168 i~r~~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g--~~~~ad~-V~Ad 243 (514)
+.-..|.+.|.+.+++.| ++++.+.+|+++.. .++.+. |...++ .+++||. |.|+
T Consensus 260 v~G~RL~~aL~~~~~~~G-g~il~g~~V~~i~~--------------------~~~~v~~V~t~~g~~~~l~AD~vVLAa 318 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLG-GVMLPGDRVLRAEF--------------------EGNRVTRIHTRNHRDIPLRADHFVLAS 318 (419)
T ss_pred CcHHHHHHHHHHHHHHCC-CEEEECcEEEEEEe--------------------eCCeEEEEEecCCccceEECCEEEEcc
Confidence 566889999999999998 89999999999986 334343 554565 4799999 9999
Q ss_pred CCC-ch-hhhhh
Q 010225 244 GGK-SR-VRELA 253 (514)
Q Consensus 244 G~~-S~-vR~~l 253 (514)
|.| |. +-+.+
T Consensus 319 Gaw~S~gL~a~l 330 (419)
T TIGR03378 319 GSFFSNGLVAEF 330 (419)
T ss_pred CCCcCHHHHhhc
Confidence 999 75 43333
No 391
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.11 E-value=0.2 Score=52.29 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=31.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|+|||+|.+|+++|..|++. |++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~----G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL----GAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence 46799999999999999999996 99999999875
No 392
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.98 E-value=0.23 Score=45.58 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~ 91 (514)
....|+|||||-.|...|..|.+. |.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~----ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY----GAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEcCC
Confidence 345899999999999999999986 8999999854
No 393
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=91.97 E-value=0.15 Score=50.09 Aligned_cols=43 Identities=28% Similarity=0.372 Sum_probs=37.0
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~ 95 (514)
..+..+-|||+|+|||++|..|.|-+...|.++.|+|.-+..+
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~G 62 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAG 62 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccC
Confidence 4456799999999999999999997666789999999887664
No 394
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.28 Score=48.21 Aligned_cols=41 Identities=29% Similarity=0.422 Sum_probs=36.9
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
...|||+|+|-|+.=+.++..|+.. |.+|+.||+++..++.
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~----~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWD----GKNVLHIDKNDYYGST 44 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhc----CceEEEEeCCCccCcc
Confidence 3479999999999999999999996 9999999999988644
No 395
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.83 E-value=0.16 Score=49.50 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|+|||+|..|...|..|++. |++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~----g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA----GYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC----CCceEEEeCCHH
Confidence 699999999999999999996 899999998764
No 396
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.80 E-value=0.27 Score=44.97 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=29.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...+|+|||+|.++.-+|+.|++. |.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~----g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKA----GKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTT----CSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhh----CCEEEEEecCC
Confidence 347899999999999999999997 89999998876
No 397
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.54 E-value=0.23 Score=49.00 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|.|||+|..|.++|..|++. |++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~----g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK----GLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence 4699999999999999999996 89999999866
No 398
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.52 E-value=0.21 Score=50.00 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|+|||+|..|.+.|..|++. |++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~----G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA----GADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc----CCcEEEEecHH
Confidence 3699999999999999999996 99999999753
No 399
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=91.49 E-value=1.6 Score=45.80 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=30.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
...|+|||||..|+-+|..+.+. |. +|+|+++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~----Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL----GAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCCeEEEEEecCc
Confidence 45899999999999999998886 74 7999998763
No 400
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.48 E-value=0.31 Score=48.27 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~~ 94 (514)
+..+|+|||+|-.|.++|+.|+.. |+ +++|+|.++..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~----gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLK----NLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCCch
Confidence 446899999999999999999885 75 89999988754
No 401
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.48 E-value=0.27 Score=45.13 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
...+|+|||+|-.|...|..|++. |+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~----Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA----GIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc----CCCEEEEECCCE
Confidence 356899999999999999999997 88 699999884
No 402
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.35 E-value=0.25 Score=48.42 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..|.|||+|..|...|..|+++ |++|+++|+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~----G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA----GMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence 3599999999999999999996 999999998763
No 403
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.34 E-value=0.28 Score=48.91 Aligned_cols=33 Identities=39% Similarity=0.482 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|.|||+|..|.+.|..|++. |++|+++++.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~----G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK----GVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence 3699999999999999999996 99999999865
No 404
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.34 E-value=0.33 Score=41.79 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=29.8
Q ss_pred ccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|+|||+ |..|.++|+.|...+. +-++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC--CCceEEeccCc
Confidence 37999999 9999999999999742 44799999886
No 405
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.34 E-value=0.23 Score=50.24 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=31.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...+|+|||+|.+|+.+|..|.+. |.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l----Ga~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL----GATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence 346799999999999999999997 88999999865
No 406
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=91.33 E-value=13 Score=39.03 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccC-CeeEEEeCCC---cEEEeeE-EEecCCC
Q 010225 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDG---TSLYAKL-VGADGGK 246 (514)
Q Consensus 172 ~l~~~L~~~~~~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~g---~~~~ad~-V~AdG~~ 246 (514)
.+.+.|.+.+++.| ++|+.+++|++|+.+ .+.+ .. ..+.|.+.+| .++.||. |.|...+
T Consensus 220 ~l~~pl~~~L~~~G-g~i~~~~~V~~I~~~---------~~~~------~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 220 YLTKPILEYIEARG-GKFHLRHKVREIKYE---------KSSD------GSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hHHHHHHHHHHHCC-CEEECCCEEEEEEEe---------cCCC------CceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 35677888888877 899999999999861 1000 00 1234445443 4689999 9999977
Q ss_pred chhhhhh
Q 010225 247 SRVRELA 253 (514)
Q Consensus 247 S~vR~~l 253 (514)
.+.+.+
T Consensus 284 -~~~~Ll 289 (474)
T TIGR02732 284 -GIKRLL 289 (474)
T ss_pred -HHHhhC
Confidence 344444
No 407
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.31 E-value=1.8 Score=47.49 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
.+|+|||||..|+-+|..+.+. |. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~----ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRH----GASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHc----CCCeEEEeEecCC
Confidence 5899999999999999888876 64 7999988753
No 408
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.29 E-value=0.23 Score=40.86 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
|+|||.|..|..+|-.|.+. +.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~----~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG----GIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT----TSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhC----CCEEEEEECCcH
Confidence 79999999999999999995 789999999873
No 409
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.26 E-value=0.25 Score=48.68 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~ 93 (514)
+|.|||+|.+|.++|+.|++. | ..|.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~----g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR----GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc----CCCCEEEEEECCch
Confidence 699999999999999999986 7 47999998764
No 410
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.16 E-value=0.25 Score=49.20 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|.|||+|..|.++|..|++. |++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~----g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK----KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC----CCeEEEEecCH
Confidence 599999999999999999996 89999999865
No 411
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.09 E-value=0.25 Score=50.37 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..-.|+|+|+|+.|+.+|..|+.. |.+|+++|.++.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~----Ga~ViV~d~d~~ 236 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ----GARVIVTEVDPI 236 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEECChh
Confidence 346899999999999999999986 889999998763
No 412
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.06 E-value=0.22 Score=52.27 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..-+|+|+|+|++|+.++..++.. |.+|.++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l----GA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL----GAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence 357899999999999999999887 889999998763
No 413
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.88 E-value=0.27 Score=52.81 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=31.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..+|+|||||.+|+-+|..|++. |.+|+|+++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~----g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRY----ASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHcc----CCEEEEEEeCCc
Confidence 45899999999999999999986 899999998763
No 414
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=1.6 Score=42.81 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.+|+|||||-+.+--|+.|++. +.+|+|+=|++..
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~----a~~Vtlv~r~~~~ 178 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKI----AKKVTLVHRRDEF 178 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHh----cCeEEEEecCccc
Confidence 4999999999999999999997 7889999998855
No 415
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=90.79 E-value=0.39 Score=45.53 Aligned_cols=37 Identities=35% Similarity=0.437 Sum_probs=33.4
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.....++|+|||+.+..+|..++.. |++|+|+|.++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~l----Gf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPL----PCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcC----CCEEEEEeCCcc
Confidence 3567999999999999999999998 999999998765
No 416
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.67 E-value=0.36 Score=47.66 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|.|||+|-.|.++|..|++. |++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~----G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN----GHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC----CCEEEEEeCCC
Confidence 35799999999999999999996 99999999875
No 417
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.49 E-value=0.32 Score=51.40 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.+|.|||+|..|...|..|+++ |++|+|+|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~----G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA----GIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHH
Confidence 3699999999999999999996 999999998764
No 418
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=90.45 E-value=0.19 Score=46.99 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
.+|||||+||.++|-.|+++- +.-+|+|+-..+..
T Consensus 2 fivvgggiagvscaeqla~~~--psa~illitass~v 36 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE--PSAEILLITASSFV 36 (334)
T ss_pred eEEEcCccccccHHHHHHhhC--CCCcEEEEeccHHH
Confidence 689999999999999999973 45678888877655
No 419
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.34 E-value=0.31 Score=50.21 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.+|+|||.|-.|+.+|..|++. |++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~----G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR----QKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC----CCEEEEEeCCHH
Confidence 4699999999999999999996 999999998764
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.24 E-value=0.39 Score=47.24 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
.+|.|||+|..|+.+|+.|+.. |+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~----g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK----ELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCCC
Confidence 3699999999999999999986 65 8999998553
No 421
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.23 E-value=0.31 Score=48.62 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
++|.|||.|=+||+.|..|++. |++|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~----GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL----GHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc----CCeEEEEeCCHH
Confidence 3699999999999999999997 999999998873
No 422
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.13 E-value=0.27 Score=44.92 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=33.9
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+.....|.|||||..|.-.|...+.. |++|.|+|++...
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~s----g~~V~l~d~~~~a 46 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATS----GLNVWLVDANEDA 46 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhc----CCceEEecCCHHH
Confidence 34456899999999999999999996 9999999998744
No 423
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.07 E-value=0.36 Score=41.16 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=30.5
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
+..|+|||+|-.|..+|..|++. |+ +++|+|.+..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~----Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS----GVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH----TTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHh----CCCceeecCCcce
Confidence 35799999999999999999997 77 6999998763
No 424
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.92 E-value=0.55 Score=46.40 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=31.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~ 93 (514)
...+|+|||+|-+|.++|+.|+.. |+ .+.|+|.+..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~----~~~~el~L~D~~~~ 42 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ----GIADELVIIDINKE 42 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCCc
Confidence 446899999999999999999985 66 7999998654
No 425
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.82 E-value=0.41 Score=50.61 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=32.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
-..|.|||+|..|...|..|+++ |++|+++|+.+..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a----G~~V~l~D~~~e~ 42 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA----GHTVLLYDARAGA 42 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 35699999999999999999996 9999999988753
No 426
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.70 E-value=0.55 Score=41.66 Aligned_cols=36 Identities=31% Similarity=0.315 Sum_probs=30.7
Q ss_pred CCCccEEEECCCH-HHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 53 DDQYDVAVVGGGM-VGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 53 ~~~~dVvIVGgG~-aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
-...+|+|||+|- +|..+|..|.+. |.+|+++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~----g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNR----NATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhC----CCEEEEEECCc
Confidence 4567999999995 699999999986 88999999763
No 427
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.41 E-value=0.34 Score=49.97 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|.|||.|-.|+.+|..|++. |++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~----G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL----GHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc----CCeEEEEECCHH
Confidence 599999999999999999996 999999998764
No 428
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.41 E-value=0.39 Score=47.66 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|.|||+|..|..+|..|++. |++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~----g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN----GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence 699999999999999999996 89999999865
No 429
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=89.32 E-value=2.8 Score=45.26 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=36.6
Q ss_pred cCCCceEEcCCeeEEEeeCCCCCCcccCCCCccccccccCCeeEEEeCCCcEEEeeE-EEecCCCchh
Q 010225 183 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKL-VGADGGKSRV 249 (514)
Q Consensus 183 ~~g~v~v~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~-V~AdG~~S~v 249 (514)
+++ ++++.+.+|+.+.. ..-.|..+.|.++.+|- |.|+|....+
T Consensus 71 ~~~-i~L~~~~~v~~idr----------------------~~k~V~t~~g~~~~YDkLilATGS~pfi 115 (793)
T COG1251 71 ENG-ITLYTGEKVIQIDR----------------------ANKVVTTDAGRTVSYDKLIIATGSYPFI 115 (793)
T ss_pred HcC-cEEEcCCeeEEecc----------------------CcceEEccCCcEeecceeEEecCccccc
Confidence 345 99999999999976 45567778899999999 9999987655
No 430
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.25 E-value=0.36 Score=46.84 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|.|||.|..|.++|..|++. |++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~----g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL----GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC----CCEEEEEECCH
Confidence 599999999999999999996 89999999765
No 431
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.24 E-value=0.49 Score=47.19 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=31.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
...|+|||+|-.|..+|..|+++ |+ +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a----Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA----GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCc
Confidence 46799999999999999999998 77 799999886
No 432
>PRK04148 hypothetical protein; Provisional
Probab=89.16 E-value=0.34 Score=40.97 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..|++||.| .|..+|..|++. |++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~----G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES----GFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC----CCEEEEEECCH
Confidence 579999999 999999999986 99999999887
No 433
>PRK12831 putative oxidoreductase; Provisional
Probab=89.14 E-value=0.41 Score=50.17 Aligned_cols=34 Identities=35% Similarity=0.405 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||||.+|+-+|..|.+. |.+|+|+++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~----Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRL----GAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCEEEEEeecC
Confidence 45899999999999999999997 88999999765
No 434
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.08 E-value=0.56 Score=40.01 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=30.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcE-EEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~-V~viE~~~ 92 (514)
....|+|||+|-+|-+++..|+.. |.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCH
Confidence 356899999999999999999997 776 99999865
No 435
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=88.98 E-value=1.3 Score=47.03 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=28.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..+|+|||+|.+|.=.|..|++. ..+|.+.=|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~----a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV----AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT----SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh----cCCeEEEEecc
Confidence 46899999999999999999996 77898888765
No 436
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.96 E-value=0.51 Score=48.07 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
....|+|||.|+.|..+|..|+.. |.+|+++|.++.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~----Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM----GARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC----cCEEEEEeCChh
Confidence 455899999999999999999986 899999998773
No 437
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.94 E-value=0.54 Score=46.31 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
.+|+|||+|..|.++|+.|+.. |+ .|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~----~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK----ELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCeEEEEEECCCc
Confidence 4799999999999999999986 55 9999998663
No 438
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.92 E-value=0.41 Score=50.54 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..|.|||+|..|...|..|+++ |++|+++|+.+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a----G~~V~l~d~~~e~ 40 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA----GHQVLLYDIRAEA 40 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4699999999999999999997 9999999998743
No 439
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=0.36 Score=47.02 Aligned_cols=37 Identities=35% Similarity=0.540 Sum_probs=31.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+..||+|||||-+|.-+|+-|+.. =-.|+|+|=.+..
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGi----v~hVtllEF~~eL 389 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEL 389 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhh----hheeeeeecchhh
Confidence 457999999999999999999975 3469999977644
No 440
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.76 E-value=0.6 Score=46.04 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~ 92 (514)
.+|+|||+|..|.++|..|++. |+ +|.++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~----g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL----GLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc----CCCcEEEEEECCH
Confidence 4799999999999999999986 64 899998865
No 441
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=0.49 Score=47.11 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=37.2
Q ss_pred CCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCC
Q 010225 52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK 96 (514)
Q Consensus 52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~ 96 (514)
.+..+||||||-|..-..+|.+.++. |.+|+-+|+++..+.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrs----G~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRS----GSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhc----CCceEeccCccccCC
Confidence 45689999999999999999999997 999999999998753
No 442
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.60 E-value=0.56 Score=49.00 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
++|+|||.|-+|+.+|..|++.+ .|++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g--~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC--PDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC--CCCeEEEEECCHH
Confidence 36999999999999999999852 2588999998764
No 443
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.25 E-value=0.7 Score=42.46 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
....|+|||.|-.|..+|..|++. |. +++|+|.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~----Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA----GVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc----CCCeEEEecCCEE
Confidence 456899999999999999999998 76 7999998763
No 444
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.07 E-value=0.49 Score=48.23 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
+|.|||.|-.|+.+|..|+. |++|+++|++...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-----G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-----NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCcEEEEECCHHH
Confidence 59999999999999988885 8999999998743
No 445
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.04 E-value=0.67 Score=46.29 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
...+|+|||+|-.|..+|..|++. |+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a----Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA----GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc----CCCeEEEEeCCc
Confidence 356899999999999999999997 77 899999875
No 446
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.95 E-value=0.47 Score=45.63 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+-+|+|||||.+|.-+|..+... |-+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl----gA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL----GADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc----CCeeEEEecCH
Confidence 456899999999999999999987 89999999885
No 447
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.93 E-value=0.32 Score=40.90 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=28.7
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
....+|.|||+|-+|.++|..|.+. |+.|.-+..++
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~a----g~~v~~v~srs 43 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARA----GHEVVGVYSRS 43 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHT----TSEEEEESSCH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence 4568999999999999999999997 99988776554
No 448
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.92 E-value=0.47 Score=52.45 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..|+|||+|..|...|..++.+ |++|+++|.++..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~ 348 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK----GVPVIMKDINQKA 348 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 4799999999999999999997 9999999988743
No 449
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.89 E-value=0.74 Score=44.13 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~ 93 (514)
....|+|||+|-.|..+|..|++. | -+++|+|.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~----GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART----GIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc----CCCEEEEEeCCEe
Confidence 356899999999999999999997 7 47999998764
No 450
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.57 E-value=0.71 Score=43.00 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=28.6
Q ss_pred cEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|.||| +|..|.++|..|++. |++|+++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~----G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA----GNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC----CCEEEEEEcCH
Confidence 599997 699999999999996 89999998765
No 451
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=87.40 E-value=0.59 Score=45.96 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|+|+|+|..|...|+.|+++ |.+|+++=|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~----g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA----GHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC----CCeEEEEecHH
Confidence 699999999999999999997 78888888776
No 452
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=87.16 E-value=0.63 Score=51.41 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=32.3
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
-..|+|||||..|...|+.++.+ |++|+++|.+...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~ 348 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK----GTPIVMKDINQHS 348 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence 35799999999999999999997 9999999998743
No 453
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.14 E-value=0.79 Score=45.16 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC--cEEEEEcCCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPAL 94 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g--~~V~viE~~~~~ 94 (514)
+|+|||+|-+|.++|+.|+.. | ..+.|+|++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~----g~~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ----GIADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCcch
Confidence 699999999999999999986 6 479999997643
No 454
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.12 E-value=0.78 Score=44.91 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...+|+|||.|.+|.++|..|++. |.+|+++++.+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~----Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL----GANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence 356899999999999999999997 89999999885
No 455
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.05 E-value=0.73 Score=48.28 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=30.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.-+|+|+|+|++|++++..+... |.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l----GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL----GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence 46899999999999999999987 88999999876
No 456
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.01 E-value=0.94 Score=38.94 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
.|+|||.|-.|..+|..|++. |+ +++|+|.+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~----Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS----GVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCc
Confidence 489999999999999999997 76 6999998863
No 457
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.98 E-value=0.86 Score=40.24 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=28.4
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|.|||-|-.|...|..|.+. |++|.++++.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~----g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA----GYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT----TTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhc----CCeEEeeccch
Confidence 4699999999999999999996 99999999875
No 458
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.79 E-value=0.81 Score=40.93 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
+|+|||+|-.|...|..|++. |+ +++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~----Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS----GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCE
Confidence 489999999999999999997 77 599999876
No 459
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.75 E-value=0.82 Score=46.87 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=32.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
....|+|+|.|..|..+|..|+.. |.+|+++|.++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~----Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL----GARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCch
Confidence 345899999999999999999987 899999998764
No 460
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.74 E-value=0.95 Score=44.84 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=31.5
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL 94 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~~ 94 (514)
+..+|+|||+|-.|.++|+.|+.. | ..+.|+|.+...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~----~~~~l~L~Di~~~~ 41 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK----NLGDVVLYDVIKGV 41 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC----CCCeEEEEECCCcc
Confidence 456899999999999999999986 6 579999987643
No 461
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.74 E-value=0.74 Score=46.29 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=26.9
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~ 93 (514)
.|+|+|+||.||.++..++.. | -+|+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~----Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL----GASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCHH
Confidence 699999999999997777776 5 46888887663
No 462
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=86.63 E-value=0.75 Score=45.15 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 58 VAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 58 VvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
|+|||+|-.|..+|+.|+.. |+ .|+++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~----~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK----ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC----CCcEEEEEeCCCc
Confidence 68999999999999999985 65 9999998863
No 463
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.61 E-value=0.93 Score=44.07 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=30.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
..+|+|||+|-+|.++|+.|++. |. +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~----G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTL----GVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc----CCCEEEEECCCH
Confidence 35799999999999999999987 76 799999875
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.10 E-value=0.67 Score=51.36 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..|.|||||..|...|+.++.+ |++|+++|.++..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~----G~~V~l~d~~~~~ 370 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK----GLKTVLKDATPAG 370 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC----CCcEEEecCCHHH
Confidence 5799999999999999999996 9999999988743
No 465
>PLN02256 arogenate dehydrogenase
Probab=86.10 E-value=1.3 Score=43.59 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
....+|.|||.|-.|-++|..|.+. |++|.++++..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~----G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ----GHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence 3456899999999999999999986 88999998764
No 466
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.07 E-value=1.2 Score=43.84 Aligned_cols=37 Identities=32% Similarity=0.366 Sum_probs=29.9
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..+|+|||+|-+|.++|+.|+..+ ..-.+.|+|....
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~--~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKG--LADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEeCCcc
Confidence 458999999999999999998852 1236999998763
No 467
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.03 E-value=0.98 Score=41.84 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=31.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
....|+|||+|-.|..+|..|++. |+ +++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~----Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS----GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCE
Confidence 356899999999999999999997 66 499999876
No 468
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.74 E-value=0.71 Score=51.06 Aligned_cols=35 Identities=40% Similarity=0.577 Sum_probs=31.0
Q ss_pred CccEEEECCCHHHHHHHHHhc-cCCCCCCcEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLA-SMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~-~~~~~~g~~V~viE~~~~ 93 (514)
-..|+|||||..|...|+.++ ++ |++|+++|..+.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~----G~~V~l~d~~~~ 344 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA----GLPVRIKDINPQ 344 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc----CCeEEEEeCCHH
Confidence 357999999999999999998 75 999999998763
No 469
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.48 E-value=1 Score=42.55 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~~ 93 (514)
...+|+|||+|-.|..+|..|++. |+ +++|+|.+..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~----Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAA----GVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc----CCCEEEEEeCCcc
Confidence 346899999999999999999998 54 6999998764
No 470
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=85.44 E-value=0.96 Score=39.58 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=28.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.-..++|+|-|-.|-.+|..|+.. |.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~----Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL----GARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT----T-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC----CCEEEEEECCh
Confidence 446799999999999999999997 99999999987
No 471
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.39 E-value=0.96 Score=44.13 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
..|.|||||..|.-.|..++.. |++|+++|.+..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~----G~~V~l~D~~~~ 37 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALA----GYDVVLKDISPE 37 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhc----CCceEEEeCCHH
Confidence 4799999999999999999995 899999999864
No 472
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=85.36 E-value=1 Score=42.19 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc---EEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL---SVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~---~V~viE~~~ 92 (514)
..+|+|+|+|-+|..+|..|.+. |. +|.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~----G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA----GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc----CcCcceEEEEeCCC
Confidence 45799999999999999999997 66 599999985
No 473
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.35 E-value=0.84 Score=44.56 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
+|.|||.|..|..+|..|++. |++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~----G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA----GYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC----CCeEEEEcCCH
Confidence 489999999999999999996 99999999876
No 474
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=85.26 E-value=0.81 Score=50.49 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHhc-cCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLA-SMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~-~~~~~~g~~V~viE~~~~ 93 (514)
..|+|||+|..|...|..++ ++ |++|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~----G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKA----GIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHc----CCeEEEEeCCHH
Confidence 47999999999999999988 55 999999998864
No 475
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=0.65 Score=46.21 Aligned_cols=40 Identities=33% Similarity=0.452 Sum_probs=36.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~~~~ 97 (514)
..|||+|+|-|..=+.++..|+.. |.+|+.+||++..+.-
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~----gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVD----GKKVLHIDRNDYYGGE 42 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeec----CcEEEEEeCCCCCCcc
Confidence 459999999999999999999996 9999999999987643
No 476
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.23 E-value=1.1 Score=45.51 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.0
Q ss_pred CCccEEEEC-CCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVG-gG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
....|+||| .|..|.++|..|.++ |+.|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~----G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS----GYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC----CCeEEEeCCCc
Confidence 446799999 799999999999996 99999999753
No 477
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=85.19 E-value=1.2 Score=41.99 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCCccEEEECCCHHHHHHHHHhccCCC-------CCCcEEEEEcCCCC
Q 010225 53 DDQYDVAVVGGGMVGMALACSLASMPL-------TKHLSVAIIDSNPA 93 (514)
Q Consensus 53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~-------~~g~~V~viE~~~~ 93 (514)
....+|+|||+|-.|..++-.|++.+. ..|.+++|+|.+..
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 356789999999999999999998621 01459999998763
No 478
>PLN02494 adenosylhomocysteinase
Probab=85.05 E-value=1.1 Score=46.24 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=32.0
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
....|+|+|.|..|..+|..|... |.+|+++|+++.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~----Ga~VIV~e~dp~ 288 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAA----GARVIVTEIDPI 288 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCch
Confidence 356899999999999999999886 899999998874
No 479
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.01 E-value=0.97 Score=47.71 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..|+|+|.|.+|++++..|.+. |.+|++.|..+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~----G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF----GARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence 4699999999999999998885 99999999653
No 480
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.99 E-value=1.1 Score=43.56 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=31.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|+|||.|-+|.++|..|+.. |.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~----G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL----GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence 46899999999999999999986 89999999876
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.86 E-value=0.92 Score=47.35 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|+|||+|..|..+|..|.+. |++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~----g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE----NNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCcEEEEECCHH
Confidence 699999999999999999985 999999998764
No 482
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.73 E-value=2.1 Score=33.08 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=29.3
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS 90 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~ 90 (514)
...+++|+|.|-+|..+|..|.+. .+.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~---~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE---GGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcC
Confidence 345799999999999999999986 2578999998
No 483
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.73 E-value=1.2 Score=42.28 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
...+|+|||+|-.|..+|..|++. |+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~----Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAA----GVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCE
Confidence 356899999999999999999998 65 799999876
No 484
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.59 E-value=1.3 Score=46.19 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
..|+|+|+|.+|.++|..|++. |.+|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~----G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL----GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence 4699999999999999999996 99999999765
No 485
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.46 E-value=1.1 Score=46.80 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.+|+|+|.|.+|.++|..|.+. |++|++.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~----G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL----GAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC----CCEEEEECCCCC
Confidence 3699999999999999999996 999999998753
No 486
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.35 E-value=1.6 Score=40.09 Aligned_cols=34 Identities=35% Similarity=0.321 Sum_probs=30.2
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|+|+|.|-.|..+|..|.+. |.+|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~----G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEE----GAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence 45799999999999999999996 99999988653
No 487
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.27 E-value=1.5 Score=45.73 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|+|+|.|.+|.++|..|.+ |.+|+|.|.+.
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-----g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-----KYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-----CCEEEEECCCC
Confidence 3579999999999999999985 89999999654
No 488
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.26 E-value=1.1 Score=48.19 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
.+-+|+|||.|..|-.+|..|.+. |++|+++|+++.
T Consensus 416 ~~~hiiI~G~G~~G~~la~~L~~~----g~~vvvId~d~~ 451 (558)
T PRK10669 416 ICNHALLVGYGRVGSLLGEKLLAA----GIPLVVIETSRT 451 (558)
T ss_pred cCCCEEEECCChHHHHHHHHHHHC----CCCEEEEECCHH
Confidence 356899999999999999999986 999999999874
No 489
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.19 E-value=1.3 Score=44.60 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~ 92 (514)
.+|+|||+|-.|.++|..|++. | .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~----~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN----GDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC----CCceEEEEeCCH
Confidence 4799999999999999999996 6 8999999985
No 490
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=84.11 E-value=1.1 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~ 93 (514)
+|.|||.|..|..+|..|++. |++|+++++.+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~----G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ----GHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence 699999999999999999996 899999998763
No 491
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.98 E-value=1.6 Score=45.42 Aligned_cols=35 Identities=23% Similarity=0.238 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
..|+|+|.|.+|.++|..|++. |.+|+++|..+..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~----g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN----GAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCCCc
Confidence 4799999999999999999996 9999999976643
No 492
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=83.98 E-value=1.6 Score=39.63 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=29.5
Q ss_pred CccEEEECC-CHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
...|+|+|| |..|..+|..|++. |.+|+++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~----g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE----GARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence 457999997 99999999999986 88999998654
No 493
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.77 E-value=1.5 Score=43.12 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCCc--EEEEEcCCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA 93 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g~--~V~viE~~~~ 93 (514)
+|+|||+|-+|.++|+.|... ++ .+.|+|....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~----~~~~elvL~Di~~~ 35 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL----GLFSEIVLIDVNEG 35 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCcc
Confidence 489999999999999999885 54 6999998654
No 494
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=83.63 E-value=1.3 Score=43.27 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 56 ~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
.+|.|||.|..|...|..|++. |++|.+++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~----g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA----GYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC----CCeEEEEcCCH
Confidence 3699999999999999999996 89999999875
No 495
>PRK08328 hypothetical protein; Provisional
Probab=83.56 E-value=1.4 Score=41.38 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=30.0
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
...|+|||+|-.|..+|..|++. |+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~----Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA----GVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCc
Confidence 46899999999999999999998 65 599998766
No 496
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=83.56 E-value=5.3 Score=43.76 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.8
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCC-cEEEEEcCCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA 93 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g-~~V~viE~~~~ 93 (514)
..+|+|||||..|+-+|..+.+. | .+|+++++++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~----Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRL----NAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHc----CCCeEEEeeecCc
Confidence 35899999999999988877775 6 47999998753
No 497
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=83.45 E-value=1.7 Score=40.36 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCC
Q 010225 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92 (514)
Q Consensus 54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~ 92 (514)
....|+|||||.+++-=+..|.+. |-+|+|+-..-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~----gA~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK----GCYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCC
Confidence 346799999999999999999997 89999997554
No 498
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=83.41 E-value=17 Score=37.04 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=34.2
Q ss_pred CCCCCCccEEEECCCHHHHHHHHHhccCCCCCCcEEEEEcCCCCC
Q 010225 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL 94 (514)
Q Consensus 50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~g~~V~viE~~~~~ 94 (514)
....++..|||+|.|=+|.++.-.|-.. -++|+|+..+..+
T Consensus 50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts----~YdV~vVSPRnyF 90 (491)
T KOG2495|consen 50 KNGGKKKRVVVLGSGWGAISLLKKLDTS----LYDVTVVSPRNYF 90 (491)
T ss_pred CCCCCCceEEEEcCchHHHHHHHhcccc----ccceEEeccccce
Confidence 3455778999999999999999888885 7899999987744
No 499
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.29 E-value=1.5 Score=41.14 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.6
Q ss_pred CccEEEECCCHHHHHHHHHhccCCCCCCc-EEEEEcCCC
Q 010225 55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP 92 (514)
Q Consensus 55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~g~-~V~viE~~~ 92 (514)
...|+|||.|-.|..+|..|++. |+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~----Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA----GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCE
Confidence 46899999999999999999998 66 699999876
No 500
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=83.19 E-value=1.6 Score=34.40 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHhccCCCCCC---cEEEEE-cCCC
Q 010225 57 DVAVVGGGMVGMALACSLASMPLTKH---LSVAII-DSNP 92 (514)
Q Consensus 57 dVvIVGgG~aGl~~A~~L~~~~~~~g---~~V~vi-E~~~ 92 (514)
+|.|||+|=.|.+++..|.+. | .+|.++ ++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~----g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS----GIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT----TS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHC----CCCceeEEeeccCcH
Confidence 489999999999999999997 7 889966 7776
Done!