Query 010228
Match_columns 514
No_of_seqs 310 out of 2234
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 2E-103 5E-108 740.8 45.5 488 16-509 15-504 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 1.7E-84 3.8E-89 692.1 55.5 468 28-509 19-492 (657)
3 PTZ00009 heat shock 70 kDa pro 100.0 2.6E-81 5.7E-86 673.8 57.2 474 35-513 3-486 (653)
4 PTZ00400 DnaK-type molecular c 100.0 4.4E-80 9.6E-85 663.6 57.0 476 19-513 28-516 (663)
5 PRK13411 molecular chaperone D 100.0 6.8E-80 1.5E-84 662.0 57.0 456 37-507 3-465 (653)
6 PRK13410 molecular chaperone D 100.0 6E-80 1.3E-84 660.4 55.7 456 37-507 3-465 (668)
7 PLN03184 chloroplast Hsp70; Pr 100.0 1.8E-78 3.8E-83 651.4 56.8 456 37-507 40-502 (673)
8 PRK00290 dnaK molecular chaper 100.0 3.3E-78 7.1E-83 649.9 58.9 453 37-506 3-462 (627)
9 TIGR01991 HscA Fe-S protein as 100.0 5.4E-78 1.2E-82 642.1 57.1 450 38-509 1-453 (599)
10 TIGR02350 prok_dnaK chaperone 100.0 8.5E-78 1.8E-82 644.9 57.6 461 37-513 1-473 (595)
11 KOG0101 Molecular chaperones H 100.0 4.2E-79 9.2E-84 621.5 38.6 472 34-510 5-479 (620)
12 CHL00094 dnaK heat shock prote 100.0 5.5E-77 1.2E-81 638.3 57.0 455 37-506 3-464 (621)
13 PRK05183 hscA chaperone protei 100.0 6.6E-77 1.4E-81 634.9 56.2 449 35-508 18-468 (616)
14 PF00012 HSP70: Hsp70 protein; 100.0 1.2E-75 2.5E-80 634.3 51.3 461 38-506 1-466 (602)
15 KOG0102 Molecular chaperones m 100.0 5.2E-76 1.1E-80 574.9 32.8 462 33-509 24-492 (640)
16 PRK01433 hscA chaperone protei 100.0 2E-73 4.3E-78 602.6 51.3 423 36-508 19-446 (595)
17 COG0443 DnaK Molecular chapero 100.0 1.3E-72 2.8E-77 592.9 43.0 443 35-510 4-449 (579)
18 KOG0103 Molecular chaperones H 100.0 3.7E-63 8E-68 498.9 38.4 434 37-478 2-447 (727)
19 KOG0104 Molecular chaperones G 100.0 7.1E-61 1.5E-65 483.1 37.7 427 35-465 21-473 (902)
20 PRK11678 putative chaperone; P 100.0 2.6E-54 5.6E-59 441.9 38.5 337 38-412 2-448 (450)
21 PRK13928 rod shape-determining 100.0 8.9E-39 1.9E-43 320.2 32.8 308 39-413 6-325 (336)
22 PRK13929 rod-share determining 100.0 3.9E-38 8.5E-43 314.5 32.3 305 38-409 6-324 (335)
23 PRK13927 rod shape-determining 100.0 3.8E-36 8.2E-41 301.6 31.8 306 38-411 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 5E-36 1.1E-40 300.1 32.1 306 39-411 5-327 (333)
25 PRK13930 rod shape-determining 100.0 4.1E-35 8.8E-40 294.5 31.7 306 39-411 11-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 5.4E-34 1.2E-38 277.9 21.1 305 38-409 3-319 (326)
27 COG1077 MreB Actin-like ATPase 100.0 5.1E-31 1.1E-35 246.6 24.8 308 38-412 8-332 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.7E-30 3.7E-35 246.0 22.1 204 146-407 35-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 8.8E-28 1.9E-32 231.5 26.5 202 150-409 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.6E-24 3.4E-29 220.2 22.1 194 186-408 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 4.8E-24 1E-28 219.1 25.4 196 188-411 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.9 3.5E-21 7.5E-26 192.7 26.5 198 187-412 166-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 2.4E-17 5.1E-22 167.9 17.9 302 39-411 2-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.7 6.6E-17 1.4E-21 164.8 16.2 300 37-411 2-347 (373)
35 PTZ00280 Actin-related protein 99.7 4E-15 8.6E-20 153.3 22.3 225 149-387 80-337 (414)
36 COG4820 EutJ Ethanolamine util 99.7 1.2E-16 2.6E-21 139.2 8.5 198 154-409 75-272 (277)
37 PRK13917 plasmid segregation p 99.6 6.4E-14 1.4E-18 140.1 24.6 205 175-414 115-339 (344)
38 PTZ00004 actin-2; Provisional 99.6 9E-14 2E-18 141.5 20.6 302 34-410 4-351 (378)
39 PTZ00452 actin; Provisional 99.6 1.1E-13 2.3E-18 140.4 20.0 300 36-410 5-348 (375)
40 PTZ00281 actin; Provisional 99.6 6.1E-14 1.3E-18 142.5 17.4 236 150-410 80-349 (376)
41 PF00022 Actin: Actin; InterP 99.5 1.1E-13 2.4E-18 142.3 17.0 312 35-411 3-367 (393)
42 TIGR01175 pilM type IV pilus a 99.5 1.9E-12 4.2E-17 130.8 23.5 179 185-409 142-347 (348)
43 TIGR03739 PRTRC_D PRTRC system 99.5 1.2E-12 2.5E-17 130.3 21.3 206 171-409 101-318 (320)
44 PTZ00466 actin-like protein; P 99.5 5.7E-13 1.2E-17 135.2 19.3 238 149-410 85-353 (380)
45 PF11104 PilM_2: Type IV pilus 99.4 2.7E-12 5.9E-17 128.9 16.4 179 185-409 135-339 (340)
46 PF06406 StbA: StbA protein; 99.3 5.1E-11 1.1E-15 118.2 15.0 174 201-406 141-316 (318)
47 KOG0679 Actin-related protein 99.3 2.5E-10 5.4E-15 109.6 18.4 182 36-276 11-202 (426)
48 COG5277 Actin and related prot 99.2 1.3E-09 2.9E-14 111.4 18.3 98 172-276 106-204 (444)
49 COG4972 PilM Tfp pilus assembl 99.2 7.9E-09 1.7E-13 98.1 21.6 156 186-386 149-311 (354)
50 TIGR00241 CoA_E_activ CoA-subs 99.1 3.8E-09 8.2E-14 101.2 19.0 170 204-408 73-248 (248)
51 TIGR03192 benz_CoA_bzdQ benzoy 99.0 5.5E-08 1.2E-12 93.1 21.5 180 204-411 106-288 (293)
52 TIGR03286 methan_mark_15 putat 98.8 1.7E-07 3.8E-12 93.2 17.3 71 335-410 331-402 (404)
53 PRK10719 eutA reactivating fac 98.8 9.1E-09 2E-13 103.5 6.8 83 174-268 90-184 (475)
54 TIGR02261 benz_CoA_red_D benzo 98.8 5.7E-07 1.2E-11 85.0 18.0 178 205-409 80-262 (262)
55 TIGR02259 benz_CoA_red_A benzo 98.8 5.6E-07 1.2E-11 88.5 18.4 180 204-409 249-432 (432)
56 KOG0676 Actin and related prot 98.8 5E-08 1.1E-12 96.4 10.7 233 154-410 82-345 (372)
57 PF07520 SrfB: Virulence facto 98.7 4.3E-06 9.4E-11 91.2 23.6 323 81-411 330-834 (1002)
58 KOG0677 Actin-related protein 98.7 7.1E-07 1.5E-11 81.7 14.6 237 157-414 83-364 (389)
59 COG1924 Activator of 2-hydroxy 98.7 7E-07 1.5E-11 86.7 15.4 181 203-412 210-391 (396)
60 PRK13317 pantothenate kinase; 98.4 4.8E-05 1E-09 73.6 20.8 49 362-410 222-273 (277)
61 PF08841 DDR: Diol dehydratase 98.1 4.2E-05 9.1E-10 71.4 12.3 192 194-409 104-329 (332)
62 COG4457 SrfB Uncharacterized p 97.9 0.0047 1E-07 64.3 23.5 81 325-411 743-846 (1014)
63 KOG0680 Actin-related protein 97.8 0.00035 7.5E-09 66.5 12.3 226 172-405 93-367 (400)
64 KOG0797 Actin-related protein 97.8 0.00027 5.8E-09 71.1 12.0 121 145-274 195-321 (618)
65 TIGR00555 panK_eukar pantothen 97.6 0.0074 1.6E-07 58.1 18.0 47 361-407 229-278 (279)
66 PF01869 BcrAD_BadFG: BadF/Bad 97.5 0.026 5.6E-07 54.8 22.0 72 335-409 196-271 (271)
67 PF06277 EutA: Ethanolamine ut 97.4 0.00095 2.1E-08 67.9 10.5 72 174-245 87-163 (473)
68 PF02782 FGGY_C: FGGY family o 96.8 0.0012 2.6E-08 60.8 4.3 76 334-411 120-196 (198)
69 smart00842 FtsA Cell division 96.8 0.0038 8.3E-08 57.0 7.1 30 186-215 157-186 (187)
70 COG1069 AraB Ribulose kinase [ 96.5 0.073 1.6E-06 55.0 14.2 81 330-415 399-482 (544)
71 PRK11031 guanosine pentaphosph 96.4 0.072 1.6E-06 56.4 14.8 79 186-270 92-172 (496)
72 PRK10854 exopolyphosphatase; P 96.3 0.11 2.3E-06 55.3 15.1 110 153-269 65-176 (513)
73 KOG0681 Actin-related protein 96.2 0.046 9.9E-07 56.0 11.2 124 147-275 91-215 (645)
74 TIGR01315 5C_CHO_kinase FGGY-f 96.2 0.013 2.9E-07 62.8 8.0 84 329-414 410-493 (541)
75 PRK15027 xylulokinase; Provisi 96.2 0.01 2.3E-07 62.7 7.0 80 335-415 359-438 (484)
76 PLN02669 xylulokinase 96.1 0.018 4E-07 61.8 8.1 72 337-411 421-492 (556)
77 COG0248 GppA Exopolyphosphatas 95.8 0.16 3.5E-06 53.1 13.5 59 186-244 89-148 (492)
78 TIGR03706 exo_poly_only exopol 95.8 0.14 3.1E-06 50.4 12.4 109 154-269 55-164 (300)
79 PF14450 FtsA: Cell division p 95.7 0.021 4.6E-07 47.9 5.6 47 227-273 1-52 (120)
80 COG4819 EutA Ethanolamine util 95.7 0.091 2E-06 50.7 10.1 72 174-245 89-165 (473)
81 TIGR01312 XylB D-xylulose kina 95.5 0.033 7.3E-07 58.9 7.4 79 335-415 362-441 (481)
82 PTZ00294 glycerol kinase-like 95.5 0.034 7.4E-07 59.1 7.4 79 335-415 378-457 (504)
83 PRK00047 glpK glycerol kinase; 95.5 0.035 7.5E-07 59.0 7.4 78 335-414 375-453 (498)
84 TIGR01311 glycerol_kin glycero 95.4 0.031 6.7E-07 59.3 6.8 78 335-414 371-449 (493)
85 PRK04123 ribulokinase; Provisi 95.4 0.033 7.2E-07 59.9 6.9 77 336-414 412-489 (548)
86 TIGR02628 fuculo_kin_coli L-fu 95.3 0.037 8.1E-07 58.2 6.9 76 335-414 365-443 (465)
87 TIGR01234 L-ribulokinase L-rib 95.3 0.04 8.6E-07 59.1 7.2 77 336-414 409-486 (536)
88 KOG0681 Actin-related protein 95.2 0.013 2.8E-07 59.9 2.9 68 344-411 538-614 (645)
89 PRK10331 L-fuculokinase; Provi 95.2 0.04 8.8E-07 58.1 6.8 78 335-414 361-439 (470)
90 KOG2517 Ribulose kinase and re 95.2 0.064 1.4E-06 55.7 7.9 79 335-415 386-465 (516)
91 TIGR00744 ROK_glcA_fam ROK fam 95.1 2.7 5.9E-05 41.6 19.3 44 197-242 96-140 (318)
92 TIGR01314 gntK_FGGY gluconate 95.1 0.049 1.1E-06 58.0 6.9 78 335-414 373-451 (505)
93 PLN02295 glycerol kinase 94.9 0.064 1.4E-06 57.2 7.3 78 335-414 379-462 (512)
94 TIGR02627 rhamnulo_kin rhamnul 94.9 0.067 1.5E-06 56.1 7.2 76 337-415 361-437 (454)
95 PF13941 MutL: MutL protein 94.8 0.11 2.5E-06 53.5 8.4 33 38-74 2-36 (457)
96 PRK10939 autoinducer-2 (AI-2) 94.7 0.067 1.5E-06 57.2 6.7 78 335-414 381-459 (520)
97 PRK13321 pantothenate kinase; 94.4 2.4 5.3E-05 40.6 16.1 20 38-57 2-21 (256)
98 PRK10640 rhaB rhamnulokinase; 94.4 0.095 2.1E-06 55.2 6.9 76 337-415 349-425 (471)
99 KOG2531 Sugar (pentulose and h 94.3 0.13 2.7E-06 51.9 6.9 55 355-411 435-489 (545)
100 PF14450 FtsA: Cell division p 94.0 0.03 6.6E-07 47.0 1.8 22 38-59 1-22 (120)
101 PRK13318 pantothenate kinase; 93.7 2.4 5.2E-05 40.7 14.6 20 38-57 2-21 (258)
102 PF02541 Ppx-GppA: Ppx/GppA ph 93.5 0.42 9.2E-06 46.7 9.1 108 153-269 40-151 (285)
103 COG1070 XylB Sugar (pentulose 93.3 0.32 6.8E-06 51.8 8.4 50 361-412 400-449 (502)
104 COG3426 Butyrate kinase [Energ 93.1 2.5 5.5E-05 40.2 12.8 48 360-407 294-344 (358)
105 PRK09604 UGMP family protein; 92.9 10 0.00022 38.0 18.1 52 362-413 254-310 (332)
106 PRK09585 anmK anhydro-N-acetyl 92.3 1.5 3.2E-05 44.2 11.1 64 344-411 271-338 (365)
107 PRK05082 N-acetylmannosamine k 92.0 13 0.00028 36.3 20.0 49 362-410 233-287 (291)
108 PRK03011 butyrate kinase; Prov 91.2 4.9 0.00011 40.6 13.6 47 362-408 295-344 (358)
109 COG1548 Predicted transcriptio 90.7 3.8 8.3E-05 38.5 11.0 73 157-244 76-149 (330)
110 PRK09557 fructokinase; Reviewe 90.5 19 0.0004 35.4 21.2 48 362-409 244-299 (301)
111 KOG0678 Actin-related protein 89.4 21 0.00046 34.9 15.1 97 173-273 107-207 (415)
112 TIGR00329 gcp_kae1 metallohydr 89.0 7.7 0.00017 38.3 12.7 25 362-386 258-282 (305)
113 PRK14878 UGMP family protein; 88.8 27 0.00058 34.8 18.4 25 362-386 241-265 (323)
114 PF03702 UPF0075: Uncharacteri 88.4 1.1 2.5E-05 45.0 6.5 74 335-411 260-337 (364)
115 PF02543 CmcH_NodU: Carbamoylt 88.1 11 0.00025 38.0 13.5 82 328-414 132-216 (360)
116 PF01968 Hydantoinase_A: Hydan 87.6 0.44 9.6E-06 46.6 3.0 68 337-407 216-283 (290)
117 PF07318 DUF1464: Protein of u 87.6 5.9 0.00013 39.2 10.6 72 339-415 241-319 (343)
118 PRK14101 bifunctional glucokin 87.4 12 0.00026 41.2 14.2 20 35-54 17-36 (638)
119 PRK09698 D-allose kinase; Prov 85.0 40 0.00087 33.0 22.0 37 198-235 104-140 (302)
120 COG0554 GlpK Glycerol kinase [ 84.5 2.8 6.2E-05 43.0 6.9 78 335-414 374-452 (499)
121 PTZ00340 O-sialoglycoprotein e 84.2 19 0.0004 36.1 12.4 26 362-387 263-288 (345)
122 COG2377 Predicted molecular ch 83.1 10 0.00022 37.7 9.9 54 359-412 287-344 (371)
123 PTZ00297 pantothenate kinase; 83.1 63 0.0014 39.1 18.1 296 39-407 1042-1442(1452)
124 COG0533 QRI7 Metal-dependent p 82.1 7.2 0.00016 38.6 8.4 51 331-386 231-285 (342)
125 COG0145 HyuA N-methylhydantoin 81.2 2 4.4E-05 46.9 4.7 40 203-243 256-296 (674)
126 PLN02920 pantothenate kinase 1 80.8 9.5 0.00021 38.6 8.9 50 361-410 296-351 (398)
127 PLN02666 5-oxoprolinase 79.7 22 0.00048 42.1 12.7 77 329-408 454-531 (1275)
128 TIGR03281 methan_mark_12 putat 79.7 9.4 0.0002 37.0 8.0 50 363-415 263-315 (326)
129 PRK00976 hypothetical protein; 79.6 13 0.00027 36.8 9.2 50 362-414 263-314 (326)
130 PF00370 FGGY_N: FGGY family o 79.5 1.8 3.9E-05 41.1 3.4 19 37-55 1-19 (245)
131 PF13941 MutL: MutL protein 78.8 35 0.00075 35.6 12.5 47 227-273 2-49 (457)
132 COG1940 NagC Transcriptional r 76.7 27 0.00058 34.4 11.0 22 34-55 4-25 (314)
133 smart00732 YqgFc Likely ribonu 76.6 2.5 5.4E-05 33.6 2.9 18 37-54 2-19 (99)
134 KOG2708 Predicted metalloprote 75.9 18 0.00039 33.5 8.3 45 363-407 255-300 (336)
135 PF03652 UPF0081: Uncharacteri 75.8 3.1 6.7E-05 35.6 3.4 21 36-56 1-21 (135)
136 COG5026 Hexokinase [Carbohydra 75.5 33 0.00071 35.1 10.8 23 32-54 71-93 (466)
137 PRK10331 L-fuculokinase; Provi 74.2 2.9 6.2E-05 44.1 3.4 22 36-57 2-24 (470)
138 COG2971 Predicted N-acetylgluc 73.6 94 0.002 30.4 20.5 64 341-412 228-292 (301)
139 TIGR00143 hypF [NiFe] hydrogen 73.4 4.7 0.0001 44.6 4.9 49 362-410 658-711 (711)
140 KOG1385 Nucleoside phosphatase 72.4 8.9 0.00019 38.7 6.0 76 145-243 152-231 (453)
141 COG1070 XylB Sugar (pentulose 71.2 4.7 0.0001 42.9 4.2 22 35-56 3-24 (502)
142 cd06007 R3H_DEXH_helicase R3H 69.0 18 0.00039 25.9 5.4 29 174-202 16-44 (59)
143 PRK10939 autoinducer-2 (AI-2) 68.1 4.3 9.3E-05 43.4 3.1 20 36-55 3-22 (520)
144 PTZ00294 glycerol kinase-like 67.6 4.9 0.00011 42.8 3.4 19 37-55 3-21 (504)
145 PRK15027 xylulokinase; Provisi 66.1 4.9 0.00011 42.5 3.0 19 37-55 1-19 (484)
146 TIGR02628 fuculo_kin_coli L-fu 65.9 5.4 0.00012 42.0 3.3 19 37-55 2-20 (465)
147 PLN02295 glycerol kinase 65.1 5.4 0.00012 42.6 3.1 21 37-57 1-22 (512)
148 PRK00109 Holliday junction res 64.1 7.8 0.00017 33.2 3.4 22 35-56 3-24 (138)
149 TIGR01234 L-ribulokinase L-rib 64.1 6.7 0.00014 42.1 3.6 18 37-54 2-19 (536)
150 PRK04123 ribulokinase; Provisi 64.1 6.8 0.00015 42.2 3.7 19 36-54 3-21 (548)
151 cd00529 RuvC_resolvase Hollida 63.8 11 0.00024 33.0 4.3 25 38-62 2-28 (154)
152 PLN02362 hexokinase 63.2 85 0.0018 33.4 11.4 53 184-239 204-258 (509)
153 PLN02405 hexokinase 63.0 82 0.0018 33.3 11.2 56 184-242 204-261 (497)
154 COG0816 Predicted endonuclease 62.7 7.8 0.00017 33.3 3.0 21 36-56 2-22 (141)
155 PRK00047 glpK glycerol kinase; 61.6 7.2 0.00016 41.4 3.3 19 36-54 5-23 (498)
156 PF08735 DUF1786: Putative pyr 60.9 97 0.0021 29.5 10.2 95 170-269 112-209 (254)
157 PRK13331 pantothenate kinase; 60.7 11 0.00024 35.9 4.0 27 31-57 2-28 (251)
158 PRK07058 acetate kinase; Provi 60.5 58 0.0013 33.2 9.2 47 337-387 297-344 (396)
159 TIGR03123 one_C_unchar_1 proba 60.4 6.5 0.00014 38.8 2.5 20 224-243 127-146 (318)
160 TIGR01314 gntK_FGGY gluconate 60.1 7.1 0.00015 41.6 2.9 19 37-55 1-19 (505)
161 TIGR01311 glycerol_kin glycero 60.0 7.2 0.00016 41.4 3.0 19 37-55 2-20 (493)
162 PF14574 DUF4445: Domain of un 58.6 30 0.00066 35.5 7.0 48 334-381 55-102 (412)
163 cd02640 R3H_NRF R3H domain of 58.3 41 0.00088 24.2 5.6 30 173-202 16-45 (60)
164 COG4012 Uncharacterized protei 57.7 76 0.0017 30.2 8.7 69 203-275 207-275 (342)
165 TIGR03723 bact_gcp putative gl 57.3 2E+02 0.0044 28.4 18.6 45 362-406 259-308 (314)
166 PF00349 Hexokinase_1: Hexokin 57.1 67 0.0015 29.6 8.5 25 223-247 61-85 (206)
167 PTZ00107 hexokinase; Provision 55.8 1.6E+02 0.0034 31.0 11.8 60 180-239 189-251 (464)
168 PF14574 DUF4445: Domain of un 55.6 27 0.00058 36.0 6.0 86 323-409 289-375 (412)
169 PLN02669 xylulokinase 54.7 11 0.00024 40.6 3.3 21 34-54 6-26 (556)
170 TIGR01315 5C_CHO_kinase FGGY-f 54.6 11 0.00024 40.6 3.2 17 38-54 2-18 (541)
171 PRK13310 N-acetyl-D-glucosamin 53.6 32 0.00069 33.7 6.2 48 362-409 245-300 (303)
172 PF02075 RuvC: Crossover junct 53.0 25 0.00053 30.6 4.6 24 38-61 1-26 (149)
173 PLN02914 hexokinase 52.5 2.2E+02 0.0048 30.1 12.2 62 179-243 199-262 (490)
174 KOG1369 Hexokinase [Carbohydra 52.5 1.6E+02 0.0034 31.0 10.9 65 178-245 184-251 (474)
175 TIGR01319 glmL_fam conserved h 52.4 2E+02 0.0043 30.0 11.6 51 230-281 1-51 (463)
176 TIGR02707 butyr_kinase butyrat 50.5 41 0.00089 33.9 6.4 46 362-407 293-341 (351)
177 PRK13310 N-acetyl-D-glucosamin 50.4 1.3E+02 0.0028 29.4 9.9 38 197-235 95-133 (303)
178 PRK00039 ruvC Holliday junctio 50.3 16 0.00034 32.5 3.0 19 36-54 2-20 (164)
179 PRK09605 bifunctional UGMP fam 49.5 35 0.00076 36.6 6.1 52 362-413 245-301 (535)
180 COG5026 Hexokinase [Carbohydra 49.3 62 0.0013 33.2 7.2 28 223-250 73-101 (466)
181 cd02641 R3H_Smubp-2_like R3H d 48.1 67 0.0015 23.0 5.4 29 174-202 17-45 (60)
182 KOG0797 Actin-related protein 45.8 6.1 0.00013 40.8 -0.4 51 362-412 526-590 (618)
183 TIGR00250 RNAse_H_YqgF RNAse H 45.7 13 0.00029 31.4 1.8 18 39-56 1-18 (130)
184 cd02639 R3H_RRM R3H domain of 43.3 54 0.0012 23.6 4.3 29 174-202 17-45 (60)
185 KOG2707 Predicted metalloprote 42.8 3.6E+02 0.0079 27.0 17.4 222 153-387 82-330 (405)
186 TIGR03722 arch_KAE1 universal 42.5 3.5E+02 0.0076 26.8 15.6 43 362-404 242-289 (322)
187 PLN02377 3-ketoacyl-CoA syntha 41.8 58 0.0013 34.5 6.1 54 334-387 165-219 (502)
188 PRK13326 pantothenate kinase; 41.6 30 0.00066 33.2 3.7 21 37-57 7-27 (262)
189 cd02646 R3H_G-patch R3H domain 41.5 76 0.0017 22.5 4.9 41 159-202 3-43 (58)
190 COG2069 CdhD CO dehydrogenase/ 41.3 49 0.0011 31.9 4.9 66 173-239 251-327 (403)
191 COG2192 Predicted carbamoyl tr 40.4 4.9E+02 0.011 27.8 22.3 81 328-413 255-337 (555)
192 COG1521 Pantothenate kinase ty 39.8 3.2E+02 0.0069 26.1 10.1 44 331-374 181-224 (251)
193 PRK13320 pantothenate kinase; 39.5 37 0.0008 32.3 3.9 21 37-57 3-23 (244)
194 PF01968 Hydantoinase_A: Hydan 39.0 21 0.00046 34.9 2.3 42 201-243 54-95 (290)
195 KOG2517 Ribulose kinase and re 38.1 42 0.00092 35.4 4.3 20 35-54 5-24 (516)
196 PLN03170 chalcone synthase; Pr 37.4 1E+02 0.0022 31.8 7.0 48 340-387 105-153 (401)
197 TIGR01319 glmL_fam conserved h 37.2 21 0.00046 36.9 2.0 59 185-243 193-267 (463)
198 PLN03173 chalcone synthase; Pr 36.9 1.1E+02 0.0024 31.3 7.2 47 341-387 102-149 (391)
199 PTZ00107 hexokinase; Provision 35.4 1.2E+02 0.0026 31.9 7.2 25 223-247 72-96 (464)
200 PF08392 FAE1_CUT1_RppA: FAE1/ 34.9 76 0.0016 30.9 5.2 43 345-387 87-130 (290)
201 PLN03172 chalcone synthase fam 34.3 1.2E+02 0.0027 31.0 7.0 49 339-387 100-149 (393)
202 TIGR00671 baf pantothenate kin 33.4 45 0.00097 31.7 3.4 19 39-57 2-20 (243)
203 PF00349 Hexokinase_1: Hexokin 33.1 36 0.00078 31.4 2.6 33 186-218 169-204 (206)
204 COG1521 Pantothenate kinase ty 32.3 50 0.0011 31.5 3.5 21 38-58 2-22 (251)
205 TIGR02627 rhamnulo_kin rhamnul 31.5 24 0.00052 37.0 1.4 16 39-54 1-16 (454)
206 TIGR00067 glut_race glutamate 31.5 82 0.0018 30.0 4.9 42 362-407 172-213 (251)
207 TIGR01312 XylB D-xylulose kina 31.2 29 0.00062 36.6 1.9 17 39-55 1-17 (481)
208 PRK13324 pantothenate kinase; 31.2 55 0.0012 31.4 3.6 20 38-57 2-21 (258)
209 PLN02902 pantothenate kinase 31.1 2.4E+02 0.0052 31.9 8.8 49 361-410 345-400 (876)
210 PF03309 Pan_kinase: Type III 30.8 63 0.0014 29.7 3.9 21 38-58 1-21 (206)
211 PF04848 Pox_A22: Poxvirus A22 30.1 93 0.002 26.8 4.4 26 36-61 1-28 (143)
212 PLN03168 chalcone synthase; Pr 29.2 1.5E+02 0.0032 30.4 6.6 50 338-387 98-148 (389)
213 COG4359 Uncharacterized conser 29.2 4E+02 0.0087 24.2 8.2 82 361-480 88-169 (220)
214 PLN02854 3-ketoacyl-CoA syntha 29.1 1.1E+02 0.0023 32.7 5.6 43 345-387 192-235 (521)
215 PRK00180 acetate kinase A/prop 29.0 1.4E+02 0.0031 30.6 6.3 48 337-387 301-349 (402)
216 PRK12408 glucokinase; Provisio 29.0 40 0.00087 33.7 2.4 23 33-55 13-35 (336)
217 PRK00292 glk glucokinase; Prov 28.5 57 0.0012 32.2 3.4 41 196-236 88-139 (316)
218 KOG1369 Hexokinase [Carbohydra 27.5 3.2E+02 0.0069 28.7 8.6 26 223-248 84-109 (474)
219 PF00480 ROK: ROK family; Int 27.5 3.5E+02 0.0077 23.6 8.2 88 147-242 30-134 (179)
220 COG4126 Hydantoin racemase [Am 27.4 2.6E+02 0.0057 26.0 7.0 40 172-217 70-109 (230)
221 COG0554 GlpK Glycerol kinase [ 27.2 53 0.0012 34.1 2.9 21 35-55 4-24 (499)
222 TIGR00228 ruvC crossover junct 26.7 70 0.0015 28.0 3.2 17 38-54 1-17 (156)
223 PRK11199 tyrA bifunctional cho 26.3 6.9E+02 0.015 25.3 10.9 15 263-277 13-27 (374)
224 PLN02596 hexokinase-like 25.9 8.2E+02 0.018 26.0 14.1 58 184-244 204-263 (490)
225 smart00874 B5 tRNA synthetase 25.8 2E+02 0.0044 20.9 5.2 60 99-158 8-67 (71)
226 PF11052 Tr-sialidase_C: Trans 25.3 79 0.0017 18.3 2.1 15 2-16 1-15 (25)
227 PF12273 RCR: Chitin synthesis 25.0 44 0.00096 28.2 1.6 11 8-18 1-11 (130)
228 COG1940 NagC Transcriptional r 24.7 3E+02 0.0064 26.9 7.8 56 224-279 5-60 (314)
229 KOG2872 Uroporphyrinogen decar 24.6 2E+02 0.0044 27.9 5.9 70 328-401 219-288 (359)
230 PF03484 B5: tRNA synthetase B 24.5 2.8E+02 0.006 20.4 5.7 59 99-158 8-66 (70)
231 TIGR01865 cas_Csn1 CRISPR-asso 24.2 62 0.0013 36.6 3.0 20 37-56 2-21 (805)
232 PLN00130 succinate dehydrogena 23.5 10 0.00022 33.4 -2.5 20 37-56 58-77 (213)
233 PF07066 DUF3882: Lactococcus 22.8 1.1E+02 0.0023 26.3 3.4 23 36-58 2-29 (159)
234 smart00732 YqgFc Likely ribonu 22.7 1.9E+02 0.0042 22.4 5.0 22 226-247 2-23 (99)
235 PRK00865 glutamate racemase; P 22.7 1.9E+02 0.004 27.8 5.6 43 362-408 177-219 (261)
236 PF05378 Hydant_A_N: Hydantoin 22.2 83 0.0018 28.2 2.9 18 39-56 2-19 (176)
237 COG4020 Uncharacterized protei 22.1 88 0.0019 29.6 3.0 52 360-414 266-320 (332)
238 PF14239 RRXRR: RRXRR protein 21.9 1.1E+02 0.0024 27.3 3.5 24 33-56 48-71 (176)
239 PRK13321 pantothenate kinase; 21.8 3.5E+02 0.0076 25.7 7.3 17 227-243 2-18 (256)
240 PF04312 DUF460: Protein of un 21.5 1.3E+02 0.0028 25.7 3.7 27 34-61 30-57 (138)
241 COG2441 Predicted butyrate kin 21.0 1.4E+02 0.003 28.8 4.1 54 361-414 272-335 (374)
242 TIGR00016 ackA acetate kinase. 20.8 2.7E+02 0.0058 28.6 6.5 46 339-387 307-353 (404)
243 PF11119 DUF2633: Protein of u 20.6 69 0.0015 22.8 1.6 24 7-30 10-34 (59)
244 KOG1794 N-Acetylglucosamine ki 20.6 2.1E+02 0.0046 27.8 5.3 50 365-414 266-319 (336)
245 PF04202 Mfp-3: Foot protein 3 20.4 57 0.0012 23.7 1.1 19 8-26 4-22 (71)
246 COG3894 Uncharacterized metal- 20.4 4.4E+02 0.0096 27.8 7.8 47 225-271 164-211 (614)
247 TIGR02707 butyr_kinase butyrat 20.1 1.8E+02 0.004 29.2 5.2 26 227-252 2-27 (351)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-103 Score=740.81 Aligned_cols=488 Identities=78% Similarity=1.141 Sum_probs=466.4
Q ss_pred HHHHhhhhhhhhhhhh-hccCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhC
Q 010228 16 IVFFGGLFAISIAKEE-ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVN 94 (514)
Q Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~ 94 (514)
++||.|.+++....+. .+....+||||+||||||++++++|++++|.|.+|+|.+||+|+|+++++++|++|+++...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~N 94 (663)
T KOG0100|consen 15 VLFFGCSEAASTEKEDEAEKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSN 94 (663)
T ss_pred HHHhhhhhhhhhccccchhccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccC
Confidence 3344455554443332 334578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHhhHhhCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 010228 95 PDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 174 (514)
Q Consensus 95 ~~~~~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~ 174 (514)
|++++++.||++|+.++++.++++++.+||++++.++++++++....|+.+.++|+++++++|..+++.|+.+++..+.+
T Consensus 95 PenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~ 174 (663)
T KOG0100|consen 95 PENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTH 174 (663)
T ss_pred cccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999999999999999999999999999966888999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEe
Q 010228 175 AVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLST 254 (514)
Q Consensus 175 vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~ 254 (514)
.|+||||||++.||+++++|...||+.++++|+||+|||++|+++......++||||+||||||+|++.++++.++++++
T Consensus 175 AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaT 254 (663)
T KOG0100|consen 175 AVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLAT 254 (663)
T ss_pred eEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEec
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHH
Q 010228 255 NGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF 334 (514)
Q Consensus 255 ~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~ 334 (514)
.|+.++||++||+++++|+...++++++.+++.+.+++.+|+++||++|+.||++.+..+.++++++|.|++-++||..|
T Consensus 255 nGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkF 334 (663)
T KOG0100|consen 255 NGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKF 334 (663)
T ss_pred CCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
|++..+++...+.+++++|+++++++.+|+.|+||||++|+|.+|++|+++|.++++....||++|||+|||.+|..+++
T Consensus 335 EElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsG 414 (663)
T KOG0100|consen 335 EELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSG 414 (663)
T ss_pred HHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceece
Q 010228 415 EGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEF 493 (514)
Q Consensus 415 ~~~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~ 493 (514)
... ..++++.|++|+++||++.+|.|..+||||+.||++++..|++..|+|..+.|.+|||++. +++|. .||-
T Consensus 415 ee~--t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~----lLGk 488 (663)
T KOG0100|consen 415 EED--TGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNH----LLGK 488 (663)
T ss_pred ccC--cCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeecccccccccc----cccc
Confidence 754 7799999999999999999999999999999999999999999999999999999999999 88883 7999
Q ss_pred EEecCCCcCccccccc
Q 010228 494 LQLLGEPLKLKSHLKL 509 (514)
Q Consensus 494 ~~~~~~~~~~~~~~~~ 509 (514)
|++.||||++|+.|.+
T Consensus 489 FdltGipPAPRGvpqI 504 (663)
T KOG0100|consen 489 FDLTGIPPAPRGVPQI 504 (663)
T ss_pred ccccCCCCCCCCCccE
Confidence 9999999999998865
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.7e-84 Score=692.12 Aligned_cols=468 Identities=52% Similarity=0.847 Sum_probs=429.7
Q ss_pred hhhhhccCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhC
Q 010228 28 AKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (514)
Q Consensus 28 ~~~~~~~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg 107 (514)
+|++......+||||||||||++|++++++++++.|..|.+.+||+|+|.++++++|..|+.+...+|.++++++||+||
T Consensus 19 ~~~~~~~~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG 98 (657)
T PTZ00186 19 RHESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIG 98 (657)
T ss_pred ccccCcccceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhc
Confidence 45665556679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHH
Q 010228 108 RKFEDKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDA 186 (514)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~ 186 (514)
+++.++.++.....+||+++ ..++...+. .+..+.++|+++++++|+++++.++.+++.++.++|||||++|++.
T Consensus 99 ~~~~d~~v~~~~~~~p~~vv~~~~~~~~i~----~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~ 174 (657)
T PTZ00186 99 RRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ----DGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDA 174 (657)
T ss_pred cccccHHHHHhhccCcEEEEEcCCCceEEE----eCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChH
Confidence 99999999999999999988 455554433 2234689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHH
Q 010228 187 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (514)
Q Consensus 187 qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 266 (514)
||+++++|++.|||+++++++||+|||++|+.... .+.+++|||+||||||+|++++.++.++++++.|+..+||++||
T Consensus 175 qR~at~~Aa~~AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD 253 (657)
T PTZ00186 175 QRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFD 253 (657)
T ss_pred HHHHHHHHHHHcCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHH
Confidence 99999999999999999999999999999987653 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCC----ceeEEeeeHHHHHHHHHHHH
Q 010228 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLF 342 (514)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~ 342 (514)
++|.+|+.++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++.+.|||++|++++++++
T Consensus 254 ~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~ 333 (657)
T PTZ00186 254 LALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLI 333 (657)
T ss_pred HHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHH
Confidence 99999999999999998888889999999999999999999999888888765432 35788999999999999999
Q ss_pred hhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcc
Q 010228 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKD 422 (514)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~ 422 (514)
+++..+++++|+++++.+.+|+.|+||||+||+|.|+++|++.| +.++....||+++||+|||++|+.+++. .++
T Consensus 334 ~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~ 408 (657)
T PTZ00186 334 ERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKG 408 (657)
T ss_pred HHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCc
Confidence 99999999999999999999999999999999999999999999 5666788999999999999999998874 457
Q ss_pred eEEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCc
Q 010228 423 ILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPL 501 (514)
Q Consensus 423 ~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~ 501 (514)
+++.|++|++||+++.++.+.+|||||+++|++++..|++..|||+.+.|.||||++. +.+|. .|+.+.+.|+|+
T Consensus 409 ~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~----~lg~~~l~~ip~ 484 (657)
T PTZ00186 409 LVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQ----MMGQFDLVGIPP 484 (657)
T ss_pred eEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEeccccccccc----ccceEEEcCCCC
Confidence 8999999999999999999999999999999999999999999999999999999998 77773 789999999999
Q ss_pred Cccccccc
Q 010228 502 KLKSHLKL 509 (514)
Q Consensus 502 ~~~~~~~~ 509 (514)
..++.+++
T Consensus 485 ~~~G~~~I 492 (657)
T PTZ00186 485 APRGVPQI 492 (657)
T ss_pred CCCCCCcE
Confidence 88876544
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=2.6e-81 Score=673.77 Aligned_cols=474 Identities=65% Similarity=1.008 Sum_probs=438.1
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
...+||||||||||++|++.+|+++++.|..|++.+||+|+|.++++++|..|+.....+|.++++++||+||+.++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 35689999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (514)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~ 193 (514)
++...+.+||.++ ..++...+.+.+ .+..+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 161 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTY-QGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKD 161 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEe-CCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHH
Confidence 9999999999987 677778888877 66678899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHhhhhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHH
Q 010228 194 AGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (514)
Q Consensus 194 a~~~aGl~~~~li~Ep~Aaal~~~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 272 (514)
||+.|||+++++++||+|||++|+..... ...+++|||+||||+|+|++++.++.++++++.++..+||++||++|++|
T Consensus 162 Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 162 AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHH
Confidence 99999999999999999999999876543 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHH
Q 010228 273 FIKLIKKKH-GKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (514)
Q Consensus 273 l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (514)
+.++|++++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++.++++.++.++|||++||++++|+++++.+.+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~ 321 (653)
T PTZ00009 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEK 321 (653)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877 4677788999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccc
Q 010228 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (514)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
+|++++++..+|+.|+|+||+||+|.|+++|++.|++..+....||+++||+|||++|+.+++......+++.+.|++|+
T Consensus 322 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~ 401 (653)
T PTZ00009 322 VLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPL 401 (653)
T ss_pred HHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeeccc
Confidence 99999999999999999999999999999999999766788889999999999999999998764444678999999999
Q ss_pred eeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccc-----
Q 010228 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKS----- 505 (514)
Q Consensus 432 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 505 (514)
+||++..++.+.++||+|+++|+++++.|++..|+|+.+.|.||||+.. ..+| ..|+.+.++|+|+..++
T Consensus 402 slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n----~~lg~~~i~~i~~~~~g~~~i~ 477 (653)
T PTZ00009 402 SLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDN----NLLGKFHLDGIPPAPRGVPQIE 477 (653)
T ss_pred ccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCC----ceEEEEEEcCCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999988 6655 37889999888876544
Q ss_pred -cccccccc
Q 010228 506 -HLKLMQMV 513 (514)
Q Consensus 506 -~~~~~~~~ 513 (514)
.+++|.++
T Consensus 478 v~f~id~~G 486 (653)
T PTZ00009 478 VTFDIDANG 486 (653)
T ss_pred EEEEECCCC
Confidence 45666554
No 4
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=4.4e-80 Score=663.63 Aligned_cols=476 Identities=53% Similarity=0.845 Sum_probs=429.5
Q ss_pred HhhhhhhhhhhhhhccCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCc
Q 010228 19 FGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDR 97 (514)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~ 97 (514)
.+|..+.-.+.. ...+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.+
T Consensus 28 ~~~~~~~~~~~~----~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ 103 (663)
T PTZ00400 28 SLCTSAIRFAKA----TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103 (663)
T ss_pred HHHHHhhhhhhh----cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcc
Confidence 345555443333 24699999999999999999999999999999999999999975 5899999999999999999
Q ss_pred hhhHhhHhhCCCCCCHHHHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEE
Q 010228 98 TIFDVKRLIGRKFEDKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAV 176 (514)
Q Consensus 98 ~~~~~k~llg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vv 176 (514)
+++++||+||++++++.++...+.+||.++ ..++...+.+ . ...++|+++++++|++|++.++.+++.++.++|
T Consensus 104 ti~~~KrliG~~~~d~~~~~~~~~~p~~~~~~~~~~~~~~~---~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~V 178 (663)
T PTZ00400 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA---Q--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAV 178 (663)
T ss_pred eehhhhhhcCCCcCcHHHHhhhccCCeEEEecCCCceEEEE---C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 999999999999999999988899999988 5555555443 2 368999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecC
Q 010228 177 VTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNG 256 (514)
Q Consensus 177 iTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~ 256 (514)
||||++|++.||+++++||+.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|
T Consensus 179 ITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~g 257 (663)
T PTZ00400 179 ITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNG 257 (663)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEeccc
Confidence 999999999999999999999999999999999999999987653 4678999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCC----ceeEEeeeHH
Q 010228 257 DTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRA 332 (514)
Q Consensus 257 ~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~ 332 (514)
+..+||++||+.|++|+.++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++.+.|||+
T Consensus 258 d~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~ 337 (663)
T PTZ00400 258 NTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRA 337 (663)
T ss_pred CCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHH
Confidence 999999999999999999999999988888889999999999999999999998888888766433 4788999999
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 333 RFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 333 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
+|+++++|+++++.+++.++|+++++.+.+++.|+||||+|++|+|+++|++.| +.++....||+++||+|||++|+.+
T Consensus 338 efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l 416 (663)
T PTZ00400 338 KLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVL 416 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999 5677888999999999999999998
Q ss_pred cCCCCCCCcceEEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-cccccccccee
Q 010228 413 SGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFL 491 (514)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~ 491 (514)
++. .+++.+.|++|++||+++.+|.+.++||+|+++|+++++.|++..|+|+.+.|.||||++. +.+| ..+
T Consensus 417 ~~~----~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n----~~l 488 (663)
T PTZ00400 417 KGE----IKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADN----KLL 488 (663)
T ss_pred cCC----ccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcC----cee
Confidence 764 3578999999999999999999999999999999999999999999999999999999998 7776 368
Q ss_pred ceEEecCCCcCccc------cccccccc
Q 010228 492 EFLQLLGEPLKLKS------HLKLMQMV 513 (514)
Q Consensus 492 ~~~~~~~~~~~~~~------~~~~~~~~ 513 (514)
+.+.+.|+|+..++ .|.+|.+|
T Consensus 489 g~~~i~~i~~~~~g~~~i~v~f~id~~G 516 (663)
T PTZ00400 489 GQFDLVGIPPAPRGVPQIEVTFDVDANG 516 (663)
T ss_pred EEEEEcCCCCCCCCCceEEEEEEECCCC
Confidence 88999999886654 34555544
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6.8e-80 Score=661.96 Aligned_cols=456 Identities=52% Similarity=0.835 Sum_probs=417.6
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++.+|.+.++.|..|++.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.+..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 589999999999999999999999999999999999999975 489999999999999999999999999999988764
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
.....+||.++ ..++...+. + . ...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~--i-~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQ--I-R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred -HHhhcCCceEEecCCCceEEE--E-C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 34567899887 444444343 3 2 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
|+.|||+++++++||+|||++|+......+.++||||+||||+|+|++++.++.++++++.|+..+||++||+.|++|+.
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999998876556788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC----CceeEEeeeHHHHHHHHHHHHhhhhcHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (514)
++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++.+.|||++|+++++|+++++.++++
T Consensus 236 ~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 315 (653)
T PRK13411 236 ENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQ 315 (653)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888999999999999999999999988888876543 25688899999999999999999999999
Q ss_pred HHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccc
Q 010228 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (514)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (514)
++|+++++.+.+++.|+||||+|++|+|++.|++.|++..+....||+++||+|||++|+.+++. .+++.+.|++|
T Consensus 316 ~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~p 391 (653)
T PRK13411 316 QALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTP 391 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeeccc
Confidence 99999999999999999999999999999999999976778888999999999999999998864 45889999999
Q ss_pred ceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccccc
Q 010228 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHL 507 (514)
Q Consensus 431 ~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (514)
++||+++.++.|.+|||||+++|+++++.|.+..|+|+.+.|.+|||++. ..+|. .++.+.+.|+|+..++..
T Consensus 392 ~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~----~lg~~~l~~i~~~~~g~~ 465 (653)
T PRK13411 392 LSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNK----SLGKFLLTGIPPAPRGVP 465 (653)
T ss_pred ceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCc----eeeEEEEcCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999998 76663 689999999998766543
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=6e-80 Score=660.41 Aligned_cols=456 Identities=49% Similarity=0.808 Sum_probs=418.0
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++.+|.+.++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+++.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 689999999999999999999999999999999999999974 6899999999999999999999999999998765 4
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
+.....+||.+. +.+|...+.+.. ..+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~---~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPR---LEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 556677899987 555665555433 3478999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
|+.|||+++++++||+|||++|+.... .+.++||||+||||+|+|++++.++.++++++.++..+||++||++|++|+.
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~ 236 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA 236 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCC----ceeEEeeeHHHHHHHHHHHHhhhhcHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVK 350 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (514)
++|.++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++...|||++||++++++++++.++|+
T Consensus 237 ~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~ 316 (668)
T PRK13410 237 EQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVK 316 (668)
T ss_pred HHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888889999999999999999999999888888876543 4678899999999999999999999999
Q ss_pred HHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccc
Q 010228 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (514)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (514)
++|+++++.+.+|+.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. .+++++.|++|
T Consensus 317 ~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~p 391 (668)
T PRK13410 317 RALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTP 391 (668)
T ss_pred HHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeecc
Confidence 999999999999999999999999999999999999 5677888999999999999999998874 45889999999
Q ss_pred ceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccccc
Q 010228 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHL 507 (514)
Q Consensus 431 ~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (514)
++||+++.+|.+.++||+|+++|++++..|.+..|||+.+.|.||||+.. ..+|. .|+.+.++|+|+..++.+
T Consensus 392 ~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~----~lg~~~l~~i~~~~~g~~ 465 (668)
T PRK13410 392 LSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNK----SLGRFKLSGIPPAPRGVP 465 (668)
T ss_pred ccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCc----eEEEEEEeCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998 66663 689999999998776644
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-78 Score=651.37 Aligned_cols=456 Identities=52% Similarity=0.815 Sum_probs=416.9
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.+ +++++|..|+.....+|.++++++||+||+++.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 589999999999999999999999999999999999999975 5899999999999999999999999999998865 4
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
+.....+||.++ ..++...+.+.. ....++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~---~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPA---IGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 556677899988 555555555443 2357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
++.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++..+||++||+.|++|+.
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~ 273 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLA 273 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC----CceeEEeeeHHHHHHHHHHHHhhhhcHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (514)
++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++...|||++||++++++++++.++|+
T Consensus 274 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~ 353 (673)
T PLN03184 274 SNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVE 353 (673)
T ss_pred HHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999999999988888876532 25788899999999999999999999999
Q ss_pred HHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccc
Q 010228 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (514)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (514)
++|+++++...+|+.|+|+||+|++|.|+++|++.| +..+....||+++||+|||++|+.+++. .+++.+.|++|
T Consensus 354 ~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~p 428 (673)
T PLN03184 354 NALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVTP 428 (673)
T ss_pred HHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEeccc
Confidence 999999999999999999999999999999999999 5677788899999999999999998874 45789999999
Q ss_pred ceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccccc
Q 010228 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHL 507 (514)
Q Consensus 431 ~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (514)
++||+++.++.+.++||+|+++|+++++.|.+..|+|+.+.|.||||++. ..+| ..|+.+.++|+|+..++..
T Consensus 429 ~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n----~~lg~~~i~~i~~~~~g~~ 502 (673)
T PLN03184 429 LSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDN----KSLGSFRLDGIPPAPRGVP 502 (673)
T ss_pred ccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccC----ceEEEEEEeCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999988 7776 3789999999988766543
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.3e-78 Score=649.94 Aligned_cols=453 Identities=61% Similarity=0.961 Sum_probs=416.5
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEe-CCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++++|.++++.|..|++.+||+|+|. ++++++|..|+.....+|.++++++|++||++ ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 58999999999999999999999999999999999999997 56899999999999999999999999999998 5667
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
+...+.+||+++ ..+|...+. . +| +.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~--~-~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVE--I-DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEE--E-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 788889999998 444544443 3 33 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++..+||.+||++|++|+.
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 234 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLA 234 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 999999999999999999999987653 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCC----ceeEEeeeHHHHHHHHHHHHhhhhcHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTMGPVK 350 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (514)
++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+..+ .++.+.|||++|+++++++++++.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 314 (627)
T PRK00290 235 DEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCK 314 (627)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888899999999999999999999999998888876542 5788999999999999999999999999
Q ss_pred HHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccc
Q 010228 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (514)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (514)
++|+++++.+.+++.|+|+||+|++|+|++.|++.| +.++....||+++||+|||++|+.+++. .+++.+.|++|
T Consensus 315 ~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~~ 389 (627)
T PRK00290 315 QALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTP 389 (627)
T ss_pred HHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeeccc
Confidence 999999999999999999999999999999999999 6778888999999999999999998874 45889999999
Q ss_pred ceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccc
Q 010228 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSH 506 (514)
Q Consensus 431 ~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (514)
++||++..++.+.+|||+|+++|+++++.|.+..|+|+.+.|.+|||++. ..+| ..|+.+.++|+|+..++.
T Consensus 390 ~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~----~~lg~~~i~~~~~~~~g~ 462 (627)
T PRK00290 390 LSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADN----KSLGRFNLTGIPPAPRGV 462 (627)
T ss_pred eEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcC----ceEEEEEECCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999988 6555 368999999888875543
No 9
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=5.4e-78 Score=642.10 Aligned_cols=450 Identities=45% Similarity=0.715 Sum_probs=407.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC-cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHHH
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (514)
+||||||||||++|++++|+++++.|..|++.+||+|+|.++ .+++|..|+.+...+|.++++++||++|+++.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 489999999999999999999999999999999999999865 89999999999999999999999999999876643
Q ss_pred hhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
. .+.+||.+. ..+|...+.+. . ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~--~---~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTV--Q---GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeC--C---CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 2 566899887 44555544432 2 278999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
+.||++++++++||+|||++|+.... ...++||||+||||+|+|++++.++.++++++.++..+||++||+.|++++.+
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987654 46789999999999999999999999999999999999999999999999875
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHH
Q 010228 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMED 355 (514)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 355 (514)
+ ++.+...+++.+.+|+.+||++|+.||...++.+.++. +|.++.++|||++|+++++|+++++.+++.++|++
T Consensus 232 ~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~ 305 (599)
T TIGR01991 232 Q----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD 305 (599)
T ss_pred h----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555567888999999999999999999988888864 68899999999999999999999999999999999
Q ss_pred cCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccceeeE
Q 010228 356 AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGI 435 (514)
Q Consensus 356 ~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s~gi 435 (514)
+++.+.+++.|+||||+|++|+|+++|++.| +..+....||+++||+|||++|+.+++... .+++++.|++|++||+
T Consensus 306 a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~~~--~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 306 AGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRI--GNDLLLLDVTPLSLGI 382 (599)
T ss_pred cCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccccc--cCceEEEEeeeeeeEE
Confidence 9999999999999999999999999999999 566777889999999999999999987553 4578999999999999
Q ss_pred EEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccccccc
Q 010228 436 ETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLKL 509 (514)
Q Consensus 436 ~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (514)
++.+|.+.++||||+++|++++..|++..|+|+.+.|.||||++. +.+|. .|+.+.++|+|+..++..++
T Consensus 383 ~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~----~lg~~~l~~i~~~~~g~~~i 453 (599)
T TIGR01991 383 ETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCR----SLARFELRGIPPMVAGAARI 453 (599)
T ss_pred EecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCc----eEEEEEEcCCCCCCCCCCcE
Confidence 999999999999999999999999999999999999999999998 77763 78999999999877665443
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=8.5e-78 Score=644.88 Aligned_cols=461 Identities=57% Similarity=0.888 Sum_probs=419.6
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC-cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++++|.++++.|..|++.+||+|+|.++ ++++|..|+.....+|.++++++||+||+++ ..+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHH
Confidence 3799999999999999999999999999999999999999865 8999999999999999999999999999987 346
Q ss_pred HhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
+...+.+||.+...++...+.+ + ...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~v---~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKVVGDGGDVRVKV---D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeEEcCCCceEEEE---C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6677889999666666655554 2 3679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
+.||++++++++||+|||++|+......+.++||||+||||+|+|++++.++.++++++.++..+||.+||+.|++|+.+
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 99999999999999999999987664567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC----CceeEEeeeHHHHHHHHHHHHhhhhcHHHH
Q 010228 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (514)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (514)
+|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++.+.|||++|+++++|+++++.+++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888999999999999999999999988888876643 256889999999999999999999999999
Q ss_pred HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccc
Q 010228 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (514)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
+|+++++++.+++.|+|+||+|++|+|++.|++.|+ .++....||+++||+|||++|+.+++. .+++.+.|++|+
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~~ 388 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPL 388 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeecccc
Confidence 999999999999999999999999999999999994 678888999999999999999998764 457899999999
Q ss_pred eeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccc-----
Q 010228 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKS----- 505 (514)
Q Consensus 432 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 505 (514)
+||++..++.+.++||+|+++|++++++|++..|+|+.+.|.||||++. ..+| ..|+.+.++|+|+..++
T Consensus 389 ~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~----~~lg~~~i~~~~~~~~g~~~i~ 464 (595)
T TIGR02350 389 SLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADN----KSLGRFELTGIPPAPRGVPQIE 464 (595)
T ss_pred eeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccC----cEeEEEEECCCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999999999988 6555 36889999998876554
Q ss_pred -cccccccc
Q 010228 506 -HLKLMQMV 513 (514)
Q Consensus 506 -~~~~~~~~ 513 (514)
.+++|.+|
T Consensus 465 v~f~~d~~G 473 (595)
T TIGR02350 465 VTFDIDANG 473 (595)
T ss_pred EEEEEcCCC
Confidence 45555553
No 11
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-79 Score=621.54 Aligned_cols=472 Identities=65% Similarity=0.994 Sum_probs=451.8
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCH
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (514)
+...++|||||||+++++++.+++++++.|.+|++.+||+++|.++++++|.+|+.+...+|.++++++|+++|+.++++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHH
Q 010228 114 EVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (514)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~ 192 (514)
.++.+++.|||++. +.++.+.+.+.. ++..+.++|+++.++.|.++++.++.+++..+.++|+|||++|++.||+++.
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~-~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTY-KGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecc-cccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 99999999999999 566678898888 7778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHhhhhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 010228 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (514)
Q Consensus 193 ~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (514)
+|+..||++++++++||+||+++|++.... ...+++|+|+||||+|++++.+.++.+.+.++.++.++||.+||+.+.+
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 999999999999999999999999976653 5678999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHH
Q 010228 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (514)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (514)
|+..+|+++++.++..+++.+.+|+.+||.+|+.||...++++.++++++|.++...|+|.+||+++.+++.++.+++.+
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccc
Q 010228 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (514)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
+|+++++++.+|+.|+||||++++|.++..+++.|+++++..+.||+++||+|||++|+.+++.......++++.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999888889999999999999999999999987766789999999999
Q ss_pred eeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccccccc
Q 010228 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLKLM 510 (514)
Q Consensus 432 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (514)
++|+++.++.|.++|++|+.+|+.++.+|+++.|||..+.|.||||++. +++|. .++.|.+.|+|+++++.+.+.
T Consensus 404 ~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~----~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 404 SLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNN----LLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred cccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEecccccccccc----ccceeeecCCCccccCCccee
Confidence 9999999999999999999999999999999999999999999999988 88884 569999999999999998764
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=5.5e-77 Score=638.34 Aligned_cols=455 Identities=55% Similarity=0.849 Sum_probs=414.8
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++.+|.++++.|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||++|+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 689999999999999999999999999999999999999975 4799999999999999999999999999998764 4
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
....+.+||.+. ..+|...+.+.. ....++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~---~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPA---LNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEec---CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 556677899988 445555555433 3457899999999999999999999998899999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
++.||++++++++||+|||++|+.... .+.++||||+||||+|+|++++.++.++++++.++..+||++||+.|++++.
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~ 236 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLI 236 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHH
Confidence 999999999999999999999987653 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC----CceeEEeeeHHHHHHHHHHHHhhhhcHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD----GIDFSEPLTRARFEELNNDLFRKTMGPVK 350 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~----~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 350 (514)
++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++...|+|++||++++++++++..+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 316 (621)
T CHL00094 237 KEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVE 316 (621)
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999999999999999999888888876543 24678899999999999999999999999
Q ss_pred HHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccc
Q 010228 351 KAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAP 430 (514)
Q Consensus 351 ~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 430 (514)
++|+++++.+.+++.|+|+||+|++|.|++.|++.| +.++....||+++||+|||++|+.+++. .+++.+.|++|
T Consensus 317 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~~ 391 (621)
T CHL00094 317 NALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTP 391 (621)
T ss_pred HHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeeec
Confidence 999999999999999999999999999999999999 5677888999999999999999998773 45789999999
Q ss_pred ceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccc
Q 010228 431 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSH 506 (514)
Q Consensus 431 ~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (514)
++||++..++.+.++||+|+++|+++++.|.+..|+|+.+.+.||||++. ..+| ..|+.+.++|+|+..++.
T Consensus 392 ~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n----~~lg~~~i~~~~~~~~g~ 464 (621)
T CHL00094 392 LSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDN----KSLGTFRLDGIPPAPRGV 464 (621)
T ss_pred eeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCC----CEEEEEEEeCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999998 6665 378999999998866553
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=6.6e-77 Score=634.91 Aligned_cols=449 Identities=44% Similarity=0.722 Sum_probs=403.8
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
...+||||||||||++|++.+|+++++++..|++.+||+|+|.++.+++|..|+.....+|.++++++||++|+++.+
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 95 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD-- 95 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--
Confidence 347999999999999999999999999999999999999999988899999999999999999999999999998765
Q ss_pred HHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (514)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~ 193 (514)
++.....+||.+. ..+|...+.+. + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~~--~---~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 170 (616)
T PRK05183 96 IQQRYPHLPYQFVASENGMPLIRTA--Q---GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKD 170 (616)
T ss_pred hhhhhhcCCeEEEecCCCceEEEec--C---CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 3444566888887 44666555542 2 2789999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHH
Q 010228 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (514)
Q Consensus 194 a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (514)
|++.||++++++++||+|||++|+.... .+++++|||+||||+|+|++++.++.++++++.|+..+||++||+.|++++
T Consensus 171 Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~ 249 (616)
T PRK05183 171 AARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI 249 (616)
T ss_pred HHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHH
Q 010228 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l 353 (514)
.+++ +.+...+++.+.+|+.+||++|+.||...++.+.++.+ ...|||++|+++++|+++++.++++++|
T Consensus 250 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L 319 (616)
T PRK05183 250 LEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRAL 319 (616)
T ss_pred HHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665 34444678889999999999999999999888887532 2249999999999999999999999999
Q ss_pred HHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccccee
Q 010228 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTL 433 (514)
Q Consensus 354 ~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s~ 433 (514)
+++++.+.+++.|+|+||+|++|+|++.|++.| +..+....||+++||+|||++|+.+++... .+++++.|++|++|
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~~~--~~~~~l~dv~p~sl 396 (616)
T PRK05183 320 RDAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKP--DSDMLLLDVIPLSL 396 (616)
T ss_pred HHcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccccc--cCceEEEeeccccc
Confidence 999999999999999999999999999999999 456667889999999999999999887543 45789999999999
Q ss_pred eEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccccc
Q 010228 434 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLK 508 (514)
Q Consensus 434 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (514)
|+++.+|.+.++||+|+++|++++..|++..|+|+.+.+.||||++. +.+| ..|+.+.++|+|+..++..+
T Consensus 397 gi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n----~~lg~~~i~~i~~~~~g~~~ 468 (616)
T PRK05183 397 GLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADC----RSLARFELRGIPPMAAGAAR 468 (616)
T ss_pred cceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccc----cEEEEEEeCCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999998 7776 37999999999987766543
No 14
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.2e-75 Score=634.32 Aligned_cols=461 Identities=52% Similarity=0.835 Sum_probs=416.9
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHHHh
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQR 117 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~ 117 (514)
|||||||||||++|++.++.++++.+..|++++||+|+|.++++++|..|.....++|+++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q 010228 118 DMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGI 196 (514)
Q Consensus 118 ~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~ 196 (514)
..+.+||.+. .++|...+.+.. .|....++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDY-DGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEE-TTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccc-cccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 9999999988 568888888887 67778999999999999999999999999989999999999999999999999999
Q ss_pred HcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 010228 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (514)
Q Consensus 197 ~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~ 276 (514)
.||++++++++||+|||++|+......++++||||+||||+|++++++.++.+++++..++..+||.+||++|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887766789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcC--CceEEEEEecccC-CceeEEeeeHHHHHHHHHHHHhhhhcHHHHHH
Q 010228 277 IKKKHGKDISKDKRAIGKLRREAERAKRALSS--QHQVRVEIESLFD-GIDFSEPLTRARFEELNNDLFRKTMGPVKKAM 353 (514)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~-~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l 353 (514)
++++++.+...+++.+.+|+.+||++|+.||. ..+..+.++.+.+ |.++.+.|+|++|+++++|+++++.++|.++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 99999888888999999999999999999999 6677788887777 88999999999999999999999999999999
Q ss_pred HHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEeccccee
Q 010228 354 EDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTL 433 (514)
Q Consensus 354 ~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s~ 433 (514)
+++++...+|+.|+|+||+|++|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++.+. .+++.+.|++|++|
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~~~--~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGSFR--VKDIKIIDVTPFSI 396 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTSCS--STSSCESEBESSEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccccc--cccccccccccccc
Confidence 9999999999999999999999999999999995 67788889999999999999999887543 56788899999999
Q ss_pred eEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccc
Q 010228 434 GIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSH 506 (514)
Q Consensus 434 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (514)
|++..++.+.+++++|+++|..++..|.+..++|+.+.+.||+|+.. ..+| ..|+.+.+.++|+..++.
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~----~~ig~~~i~~i~~~~~g~ 466 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDN----KKIGSYTISGIPPAPKGK 466 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGS----EEEEEEEEES-SSSSTTS
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccc----cccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988 6666 478888998888554443
No 15
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-76 Score=574.88 Aligned_cols=462 Identities=58% Similarity=0.887 Sum_probs=437.0
Q ss_pred ccCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC-cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCC
Q 010228 33 TKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (514)
Q Consensus 33 ~~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (514)
.....++|||+|||||++++..+..+.++.|..|.+.+||+++|..+ ++++|..|+++...||.++++.-|+++|+.++
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 44567999999999999999999999999999999999999999644 89999999999999999999999999999999
Q ss_pred CHHHHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHH
Q 010228 112 DKEVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (514)
Q Consensus 112 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~ 190 (514)
+++++++++..||+++ ..+|..+++. .+..++|.++.+++|.+++++++++++..+.+.|+||||||++.||++
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~-----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqa 178 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEA-----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQA 178 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEe-----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHH
Confidence 9999999999999999 6777776665 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHH
Q 010228 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVM 270 (514)
Q Consensus 191 l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~ 270 (514)
+++|.+.||+++++.++||+|||++|+++... +..++|+|+||||+|+++..+.++.+++.++.++..+||++||..+.
T Consensus 179 Tkdag~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 179 TKDAGQIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hHhhhhhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 99999999999999999999999999998775 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCC----ceeEEeeeHHHHHHHHHHHHhhhh
Q 010228 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKTM 346 (514)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i~ 346 (514)
+++..+|++..+.++..++.++++|++++|++|..||...+.++.++....+ ..+++++||.+||+++.+++++.+
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999877654 567899999999999999999999
Q ss_pred cHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEE
Q 010228 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLL 426 (514)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~ 426 (514)
+++.+.|++|++...+|+.|+|+||++|+|.+++.+++.| +..+....||+++||.|||+++..++++ ++++++.
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLL 412 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLL 412 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeee
Confidence 9999999999999999999999999999999999999999 6778888999999999999999998876 5699999
Q ss_pred ecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccc
Q 010228 427 DVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKS 505 (514)
Q Consensus 427 ~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
|++|+++|+++-+|.|..++|+|+.||+.++..|.+..|+|+.+.|.++||++. .++|. .+|.|++.|||+.+|.
T Consensus 413 dVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk----~lG~f~l~gipp~pRg 488 (640)
T KOG0102|consen 413 DVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNK----LLGSFILQGIPPAPRG 488 (640)
T ss_pred ecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCc----ccceeeecccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999 88885 5778999999999999
Q ss_pred cccc
Q 010228 506 HLKL 509 (514)
Q Consensus 506 ~~~~ 509 (514)
.+.+
T Consensus 489 vpqi 492 (640)
T KOG0102|consen 489 VPQI 492 (640)
T ss_pred CCce
Confidence 8754
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2e-73 Score=602.61 Aligned_cols=423 Identities=36% Similarity=0.556 Sum_probs=366.5
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCH--
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK-- 113 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~-- 113 (514)
..+||||||||||++|++.+|+++++.|..|++.+||+|+|.++++++|..| +++++||++|+++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 4699999999999999999999999999999999999999998889999976 7899999999987652
Q ss_pred --HHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHH
Q 010228 114 --EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (514)
Q Consensus 114 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l 191 (514)
......+. .... +...+.+.. ..+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~-~~~~~~~~~---~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDV-NSSELKLNF---ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeec-CCCeeEEEE---CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 11111111 1111 112223333 2367999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 010228 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (514)
Q Consensus 192 ~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (514)
++|++.||++++++++||+|||++|+.... ...++||||+||||+|+|++++.++.++++++.|+..+||++||++|.+
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~ 239 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQ 239 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHH
Confidence 999999999999999999999999987653 3568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHH
Q 010228 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (514)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (514)
|+.+++.. ..+.. .++.||++|+.||....... ..++|||++|+++++|+++++.+++++
T Consensus 240 ~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~ 299 (595)
T PRK01433 240 YLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQE 299 (595)
T ss_pred HHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 98876631 12222 23469999999998764321 167899999999999999999999999
Q ss_pred HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccc
Q 010228 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPL 431 (514)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 431 (514)
+|++++ ..+++.|+|+||+|++|+|++.|++.| +.++....||+++||+|||++|+.+++.. .++++.|++|+
T Consensus 300 ~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~~----~~~~l~Dv~p~ 372 (595)
T PRK01433 300 CLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAPH----TNSLLIDVVPL 372 (595)
T ss_pred HHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCCc----cceEEEEeccc
Confidence 999998 568999999999999999999999999 56777889999999999999999987643 37889999999
Q ss_pred eeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccccc
Q 010228 432 TLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLK 508 (514)
Q Consensus 432 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (514)
++|+++.+|.+.++||||+++|+++++.|++..|+|+.+.|.||||++. +.+|. .|+.+.++|+|+..++..+
T Consensus 373 slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~----~lg~~~l~~i~~~~~g~~~ 446 (595)
T PRK01433 373 SLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCR----SLARFELKGLPPMKAGSIR 446 (595)
T ss_pred ceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCc----EEEEEEEcCCCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999998 77663 7999999999987666543
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-72 Score=592.94 Aligned_cols=443 Identities=57% Similarity=0.847 Sum_probs=412.6
Q ss_pred CCcEEEEEcCccceEEEEEECC-eEEEEEcCCCCcccceEEEEeCC-cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g-~~~~i~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (514)
.+.+||||||||||++|+++++ .+.++.|..|.+.+||+++|..+ ++++|..|+++...+|.++++.+|+++|+....
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 4578999999999999999988 79999999999999999999876 599999999999999999999999999986111
Q ss_pred HHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHH
Q 010228 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (514)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~ 192 (514)
..+.+.. . .+.++|+++++++|+++++.++.+++..+.++|||||++|++.||++++
T Consensus 84 --------------------~~~~~~~-~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 84 --------------------LKISVEV-D--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------Ccceeee-C--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 1112222 2 2689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHH
Q 010228 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (514)
Q Consensus 193 ~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 272 (514)
+|++.|||+++++++||+|||++|++... .+..++|||+||||||+|++++.++.++++++.++..+||++||.+|.++
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHH
Confidence 99999999999999999999999999877 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHH
Q 010228 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKA 352 (514)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 352 (514)
+.++|+.+++.++..++..+.+|+.+||++|+.||...+..+.++....+.++...|+|++||+++.+++.++...+.++
T Consensus 220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877666778889999999999999999999999999
Q ss_pred HHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccce
Q 010228 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLT 432 (514)
Q Consensus 353 l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s 432 (514)
+.+++++..+|+.|+|+||++|+|.|++.+++.|+ .++....||+++||.|||++|..+++... ++++.|+.|++
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~~~----d~ll~Dv~pls 374 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLS 374 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCccc----CceEEeeeeec
Confidence 99999999999999999999999999999999995 88889999999999999999999887643 88999999999
Q ss_pred eeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccccccc
Q 010228 433 LGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLKLM 510 (514)
Q Consensus 433 ~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (514)
+|++..++.+..++++|+.+|.++...|.+..|+|..+.+.+++|+.. .++| ..++.|.+.|+|+++++.+.+.
T Consensus 375 lgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~----~~lg~f~l~~i~~~~~g~~~i~ 449 (579)
T COG0443 375 LGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADN----KSLGRFELDGIPPAPRGVPQIE 449 (579)
T ss_pred cccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccC----ceeEEEECCCCCCCCCCCCceE
Confidence 999999999999999999999999999999999999999999999999 8888 4799999999999999988643
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-63 Score=498.91 Aligned_cols=434 Identities=39% Similarity=0.626 Sum_probs=410.3
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (514)
.++|||||..+|.+|+++.+.++++.|+.++|.+|++++|.+..+++|.+|..+...|+.+++..+||++|++++++.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
+..+.+|+.++ ..+|...+.+.+ -|+.+.+++++|++++|.+++..+++.+..++.+|||+||++|++.||+++.+||
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~y-lge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEY-LGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hcccccchheeecCCCCcceeehc-ccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999998 899999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCC------CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKG------GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~------~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (514)
+.|||..+++++|-+|+|++|+....+ ++.+++.+|+|...+.++++.+..|.++++++.++..+||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 999999999999999999999987654 45779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHH
Q 010228 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (514)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (514)
.+|+.++|+.+|+++...+++++.||+.+||+.|+.||.+.....+++++.++.|.+..|+|++||+++.|+++++..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecc
Q 010228 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (514)
Q Consensus 350 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (514)
.++|+++++..++|+.|.++||+||+|.|.+.|.+.| ++....+.|.++|||+|||+++++++..++ ++.+-++|+.
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP~fr--VRef~v~Di~ 397 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSPTFR--VREFSVEDIV 397 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCcccc--ceecceeccc
Confidence 9999999999999999999999999999999999999 789999999999999999999999998876 7788899999
Q ss_pred cceeeEEEe----C-CEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccC
Q 010228 430 PLTLGIETV----G-GVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVS 478 (514)
Q Consensus 430 ~~s~gi~~~----~-~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~ 478 (514)
|+++.+++. + +....+||+|.++|..+..+|.... .+.+.++.+.
T Consensus 398 pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~ 447 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTK 447 (727)
T ss_pred ceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEecc
Confidence 999988753 2 5567899999999998888876533 3566666554
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-61 Score=483.14 Aligned_cols=427 Identities=35% Similarity=0.529 Sum_probs=388.4
Q ss_pred CCcEEEEEcCccceEEEEEECC-eEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCH
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNG-HVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g-~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (514)
...|++||+||.++++++..+| ..+++.|...+|++|++|+|.+++++||.+|.....++|+.++..++.++|+...++
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 3479999999999999999998 578899999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHH
Q 010228 114 EVQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATK 192 (514)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~ 192 (514)
.+....+++|+--+ ....+..+.+.+ .+ ...|+++++++|+|.+.+..|+.+...++.++|||||.+|++.+|+++.
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i-~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKI-SD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEe-CC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 88877777776544 333677777777 32 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHhhhhccCC----CceeEEEEEcCCCeeEEEEEEEe----------CCEEEEEEecCCC
Q 010228 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKG----GEKNILVFDLGGGTFDVSILTID----------NGVFEVLSTNGDT 258 (514)
Q Consensus 193 ~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~----~~~~vlVvD~GggT~dvsv~~~~----------~~~~~v~~~~~~~ 258 (514)
+|++.||++++.||+|-+|+|+.|+..+.. ..+++++||||+|.|.++++.+. ...+++++.+.+.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999988633 67899999999999999999975 2478999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCC--CCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHH
Q 010228 259 HLGGEDFDQRVMEYFIKLIKKKHGK--DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEE 336 (514)
Q Consensus 259 ~~GG~~id~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~ 336 (514)
.+||..|+.+|.+++.+.|.++++. ++..+++++.+|.++|+++|..||.+..+.++++++.++.|+..+|||++||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 9999999999999999999988864 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~ 416 (514)
+|.++..++..+|.++|..++++-++|+.|+|.||++|+|.||+.|.+..+..++....|.++|++.||+++|+.++..+
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999777888999999999999999999999887
Q ss_pred CCCCcceEEEecccceeeEEEeCC--------EEEEeeeCCCccCceEEEEEEeecC
Q 010228 417 GDETKDILLLDVAPLTLGIETVGG--------VMTKLIPRNTVIPTKKSQVFTTYQD 465 (514)
Q Consensus 417 ~~~~~~~~~~~~~~~s~gi~~~~~--------~~~~li~~~~~iP~~~~~~~~~~~~ 465 (514)
+ ++++.++|.+.++|-++-.+. ....+|+++.++|..+.++|+.+.|
T Consensus 419 K--vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysd 473 (902)
T KOG0104|consen 419 K--VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSD 473 (902)
T ss_pred c--ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCC
Confidence 6 888999999988887764332 2356899999999998777765544
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=2.6e-54 Score=441.94 Aligned_cols=337 Identities=27% Similarity=0.394 Sum_probs=285.3
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEe----------------------------------------
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT---------------------------------------- 77 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~---------------------------------------- 77 (514)
++|||||||||++|++++|+++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5999999999999999999999999999999999999994
Q ss_pred -CCcEEEcHHHHHhHhhCCCch--hhHhhHhhCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHH
Q 010228 78 -DSERLIGEAAKNQAAVNPDRT--IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISA 154 (514)
Q Consensus 78 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~ 154 (514)
++..++|..|++.+..+|..+ +.++|++||...-.. .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 346789999999999999988 779999998652110 12234899999
Q ss_pred HHHHHHHHHHHhhhCCCCCcEEEEcCCCCC-----HHHHHH---HHHHHHHcCCceeEeechhhHHHHhhhhccCCCcee
Q 010228 155 MILTKMKETAEAFLGKKIKDAVVTVPAYFN-----DAQRQA---TKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKN 226 (514)
Q Consensus 155 ~~L~~l~~~a~~~~~~~~~~vviTVPa~~~-----~~qr~~---l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~ 226 (514)
.+|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||+.+.+++||+|||++|+.... .++.
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~ 210 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKR 210 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCe
Confidence 999999999999999999999999999998 777665 7999999999999999999999999986543 5788
Q ss_pred EEEEEcCCCeeEEEEEEEeCC-------EEEEEEecCCCCCchHHHHHHHH-HHHHHHHHH----hcCCCCc--------
Q 010228 227 ILVFDLGGGTFDVSILTIDNG-------VFEVLSTNGDTHLGGEDFDQRVM-EYFIKLIKK----KHGKDIS-------- 286 (514)
Q Consensus 227 vlVvD~GggT~dvsv~~~~~~-------~~~v~~~~~~~~~GG~~id~~l~-~~l~~~~~~----~~~~~~~-------- 286 (514)
+||+|+||||+|+|++++.++ ..+++++.| ..+||++||+.|+ +++...|.+ +.+.+++
T Consensus 211 vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~ 289 (450)
T PRK11678 211 VLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAV 289 (450)
T ss_pred EEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhh
Confidence 999999999999999998653 357888888 6899999999997 677776642 1121100
Q ss_pred ---------------------------CCHHHH------------HHHHHHHHHHHHHhcCCceEEEEEecccCCceeEE
Q 010228 287 ---------------------------KDKRAI------------GKLRREAERAKRALSSQHQVRVEIESLFDGIDFSE 327 (514)
Q Consensus 287 ---------------------------~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~ 327 (514)
.+++.+ .+|+.+||++|+.||...++.+.++.+. .++..
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~ 367 (450)
T PRK11678 290 AINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLAT 367 (450)
T ss_pred hhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcce
Confidence 122222 3688999999999999999998887553 45778
Q ss_pred eeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHH
Q 010228 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 407 (514)
.|||++|+++++++++++.++++++|+++++. ++.|+||||+|++|.|++.+++.||+.++. ..+|.++||.|+|+
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla~ 443 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLAR 443 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHHH
Confidence 99999999999999999999999999999875 579999999999999999999999765554 56999999999999
Q ss_pred HHHHh
Q 010228 408 QGGIL 412 (514)
Q Consensus 408 ~a~~~ 412 (514)
+|...
T Consensus 444 ~a~~~ 448 (450)
T PRK11678 444 WAQVV 448 (450)
T ss_pred HHHhh
Confidence 99753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=8.9e-39 Score=320.16 Aligned_cols=308 Identities=27% Similarity=0.380 Sum_probs=236.6
Q ss_pred EEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC---cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
+||||||++|+++.. ++..++. .||++++..+ -..+|++|+......|.+....
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-------------- 62 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--------------
Confidence 899999999999776 3334443 4999999854 2479999977665554432210
Q ss_pred HhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
.|. .+| .+...+....+++++.+.+..........+++|||++|+..+|+++++|+
T Consensus 63 ------~pi---------------~~G---~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 ------RPL---------------RDG---VIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------ccC---------------CCC---eEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 010 022 23445667778888776554322223447999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
+.||++.+.+++||+|||++|+.... .+..++|+|+||||||+++++..... ..++.++||++||+.|.+++.+
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~ 192 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRK 192 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987543 45668999999999999999975322 3457899999999999999876
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc----eEEEEEe--cccCCceeEEeeeHHHHHHHHHHHHhhhhcHH
Q 010228 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (514)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (514)
++. .... ...||++|+.++... ...+.+. .+..+.+..++|++++|++++++.++++.+.+
T Consensus 193 ~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i 259 (336)
T PRK13928 193 KYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAV 259 (336)
T ss_pred Hhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHH
Confidence 553 2221 267999999986531 1233332 23345667789999999999999999999999
Q ss_pred HHHHHHcC--CCccCCC-eEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 350 KKAMEDAG--LEKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 350 ~~~l~~~~--~~~~~i~-~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.+.|++++ +..+.++ .|+|+||+|++|++++++++.| +.++....||+++||+||++++..+.
T Consensus 260 ~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~~ 325 (336)
T PRK13928 260 KSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENID 325 (336)
T ss_pred HHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhchH
Confidence 99999986 4456677 7999999999999999999999 67888888999999999999987643
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=3.9e-38 Score=314.46 Aligned_cols=305 Identities=26% Similarity=0.392 Sum_probs=239.8
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC-c--EEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
.+||||||+++++ +.+++.. +.+ .||+++++.+ . ..+|.+|+....++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~---------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R---------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----------
Confidence 5999999999975 4555543 334 3999999854 2 589999998887777654321 1
Q ss_pred HHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCC--CcEEEEcCCCCCHHHHHHHH
Q 010228 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI--KDAVVTVPAYFNDAQRQATK 192 (514)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~--~~vviTVPa~~~~~qr~~l~ 192 (514)
|. .+| .+..-++++.+|+++++.++..++..+ ..+|+|||++|+..||+++.
T Consensus 65 --------pi---------------~~G---~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 --------PM---------------KDG---VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred --------cC---------------CCC---ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 10 022 223447889999999998877776544 37999999999999999999
Q ss_pred HHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHH
Q 010228 193 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEY 272 (514)
Q Consensus 193 ~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 272 (514)
+|++.||++.+.+++||+|||++|+.... ....++|+|+||||+|++++...+.. ..++..+||++||+.|.++
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~ 192 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSF 192 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999976543 35678999999999999999865422 3455789999999999999
Q ss_pred HHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc----eEEEEEe--cccCCceeEEeeeHHHHHHHHHHHHhhhh
Q 010228 273 FIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----QVRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTM 346 (514)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 346 (514)
+.+.+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|++++.+++.++.
T Consensus 193 l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~ 259 (335)
T PRK13929 193 VRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHIL 259 (335)
T ss_pred HHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHH
Confidence 76543 33322 168999999998632 2223332 22345567889999999999999999999
Q ss_pred cHHHHHHHHcCC--CccCCC-eEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHH
Q 010228 347 GPVKKAMEDAGL--EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 347 ~~i~~~l~~~~~--~~~~i~-~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 409 (514)
+.+.+.|+++.. ..+.++ .|+|+||+|++|++.+++++.| +.++....||+++|++||+..-
T Consensus 260 ~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 260 EAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 999999999753 345677 6999999999999999999999 6788888899999999999764
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.8e-36 Score=301.55 Aligned_cols=306 Identities=26% Similarity=0.404 Sum_probs=227.4
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC---cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
.+||||||++++++...++ .++ .+||+|++.++ ..++|++|++....+|.++...
T Consensus 7 ~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------- 64 (334)
T ss_pred eeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------------
Confidence 4999999999998544333 233 26999999754 3589999987765555432100
Q ss_pred HHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
.|. .+|....+ +.+..+++++........ .....+++|+|++|++.+|+++++|
T Consensus 65 -------~pi---------------~~G~i~d~---~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a 118 (334)
T PRK13927 65 -------RPM---------------KDGVIADF---DVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRES 118 (334)
T ss_pred -------ecC---------------CCCeecCH---HHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 010 02222222 334555555554433322 2224799999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
++.+|++.+.+++||+|||++|+.... ....++|+|+||||||+++++..+.. ..+...+||++||+.|.+++.
T Consensus 119 ~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~ 192 (334)
T PRK13927 119 ALGAGAREVYLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVR 192 (334)
T ss_pred HHHcCCCeeccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHH
Confidence 999999999999999999999977543 35568999999999999999876433 345578999999999999987
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCce----EEEEE--ecccCCceeEEeeeHHHHHHHHHHHHhhhhcH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i--~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 348 (514)
+++ +.... ...+|++|+.++.... ..+.+ +....+.+..+.|+|++|++++.+.++++.+.
T Consensus 193 ~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~ 259 (334)
T PRK13927 193 RNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEA 259 (334)
T ss_pred HHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHH
Confidence 544 32221 1578999999875432 22333 23334566688999999999999999999999
Q ss_pred HHHHHHHcCCC--ccCCC-eEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 349 VKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 349 i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
|.+.|++++.. .+.++ .|+|+||+|++|+++++|++.| +.++....+|+++||+||++++..
T Consensus 260 i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 260 VKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999987533 23344 5999999999999999999999 678888889999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=5e-36 Score=300.10 Aligned_cols=306 Identities=26% Similarity=0.390 Sum_probs=224.2
Q ss_pred EEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC-----c--EEEcHHHHHhHhhCCCchhhHhhHhhCCCCC
Q 010228 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----E--RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (514)
+||||||+||.++....+ .++ ..||+++|.++ . ..+|++|+....+.|.+.. +++-+
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi----- 68 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM----- 68 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC-----
Confidence 999999999998875444 233 25999999743 3 6799999776545443321 01101
Q ss_pred CHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHH
Q 010228 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQAT 191 (514)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l 191 (514)
.+|....+ +.+..+++++..............+++|||++|+..+|+++
T Consensus 69 ----------------------------~~G~i~d~---~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~ 117 (333)
T TIGR00904 69 ----------------------------KDGVIADF---EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAV 117 (333)
T ss_pred ----------------------------CCCEEEcH---HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHH
Confidence 02221122 33444555554443322122223799999999999999999
Q ss_pred HHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 010228 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (514)
Q Consensus 192 ~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (514)
++|++.+|++.+.+++||+|||++|+.... ....++|+|+||||||+++++.++.. ..++..+||++||+.|.+
T Consensus 118 ~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~ 191 (333)
T TIGR00904 118 KESALSAGAREVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIIN 191 (333)
T ss_pred HHHHHHcCCCeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHH
Confidence 999999999999999999999999976543 45678999999999999999876432 245578999999999999
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCce-----EEEEEec--ccCCceeEEeeeHHHHHHHHHHHHhh
Q 010228 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ-----VRVEIES--LFDGIDFSEPLTRARFEELNNDLFRK 344 (514)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~--~~~~~~~~~~itr~~~e~~~~~~~~~ 344 (514)
++.+++ +.... ++.||++|+.++.... ..+.+.. ...+......++++++.+++.+.+++
T Consensus 192 ~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 258 (333)
T TIGR00904 192 YIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQ 258 (333)
T ss_pred HHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHH
Confidence 987544 22221 2679999999875321 1222211 11233456789999999999999999
Q ss_pred hhcHHHHHHHHcCCC--ccCCC-eEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 345 TMGPVKKAMEDAGLE--KNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 345 i~~~i~~~l~~~~~~--~~~i~-~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+.+.+.+.++++... .+..+ .|+|+||+|++|+++++|++.| +.++....+|+++||.||+++...
T Consensus 259 i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 259 IVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999987643 22233 6999999999999999999999 688888899999999999998754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.1e-35 Score=294.45 Aligned_cols=306 Identities=26% Similarity=0.365 Sum_probs=230.5
Q ss_pred EEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC---cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
+||||||++|+++++.++ .++ .+||+|++.+. ..++|++|+......|.+.. ++
T Consensus 11 vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~------------ 67 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI------------ 67 (335)
T ss_pred eEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee------------
Confidence 999999999999887443 232 24999999752 46899999876654443211 00
Q ss_pred HhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
.|+ .+|. +...+....+++++++............+++|+|++|+..+|+.+.+++
T Consensus 68 ------~pi---------------~~G~---i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 68 ------RPL---------------KDGV---IADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred ------ecC---------------CCCe---EcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 011 0221 1223456777777776655433344578999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
+.+|++.+.+++||+|||++++.... .....+|||+||||||++++...... ..+..++||.+||+.|.+++.+
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~ 197 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRR 197 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999976543 24457999999999999999865422 2456789999999999999876
Q ss_pred HHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCce----EEEEEe--cccCCceeEEeeeHHHHHHHHHHHHhhhhcHH
Q 010228 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ----VRVEIE--SLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (514)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~--~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (514)
++ +.... ...||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+.+
T Consensus 198 ~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i 264 (335)
T PRK13930 198 KY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAV 264 (335)
T ss_pred Hh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHH
Confidence 53 32222 1678999999975432 223322 22234556788999999999999999999999
Q ss_pred HHHHHHcCCC--ccCCCe-EEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 350 KKAMEDAGLE--KNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 350 ~~~l~~~~~~--~~~i~~-ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
.+.++++... .+.++. |+|+||+|++|+++++|++.| +.++....+|..+||+||++.+..
T Consensus 265 ~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 265 KSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 9999986532 233454 999999999999999999999 577888889999999999998854
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=5.4e-34 Score=277.91 Aligned_cols=305 Identities=29% Similarity=0.411 Sum_probs=218.6
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC---cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
-+||||||+++.++....| ++.++ ||+|+++.+ -..+|++|+....+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 4999999999988443334 22222 999999865 4568999976654444321 0
Q ss_pred HHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
+. .| ..+| .+...++...+|+++.+.+.........+++++||+.-++.+|+++.+|
T Consensus 59 ~~-----~P---------------l~~G---vI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 VV-----RP---------------LKDG---VIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp EE------S---------------EETT---EESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred EE-----cc---------------ccCC---cccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 10 11 1144 3445678888999988887764333456899999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
+..+|...+.+++||.|||+..++.-. .....||+|+||||||++++...+-. .......||+++|+++.+|+.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislggiv-----~s~si~~gG~~~DeaI~~~ir 189 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGGIV-----ASRSIRIGGDDIDEAIIRYIR 189 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTEEE-----EEEEES-SHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCCEE-----EEEEEEecCcchhHHHHHHHH
Confidence 999999999999999999999987765 35667999999999999999743321 133368999999999999976
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc------eEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGP 348 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 348 (514)
+++ +..+.. +.||++|+.++... ...+.-.++..|...++.++.+++.+++++.+.+|.+.
T Consensus 190 ~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~ 256 (326)
T PF06723_consen 190 EKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEA 256 (326)
T ss_dssp HHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred Hhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 554 444443 78999999987542 23444445677888999999999999999999999999
Q ss_pred HHHHHHHcCCC-ccCC--CeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHH
Q 010228 349 VKKAMEDAGLE-KNQI--DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 349 i~~~l~~~~~~-~~~i--~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 409 (514)
++++|++..-. ..|+ +.|+|+||+|+++++.++|++.+ +.++....+|.++||.||....
T Consensus 257 i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 257 IKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 99999974211 1122 46999999999999999999999 7999999999999999998654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.1e-31 Score=246.60 Aligned_cols=308 Identities=28% Similarity=0.398 Sum_probs=239.8
Q ss_pred EEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC--C---cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCC
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD--S---ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFED 112 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~--~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 112 (514)
.+|||+||.|+.+..-..| ++.++ ||+|++.. + -..+|.+|+.. +|+...+
T Consensus 8 diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~M---------------lGrTP~n 63 (342)
T COG1077 8 DIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQM---------------LGRTPGN 63 (342)
T ss_pred cceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHH---------------hccCCCC
Confidence 5999999999998765333 44544 99999976 3 35689999554 4544332
Q ss_pred HHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhC-CCCCcEEEEcCCCCCHHHHHHH
Q 010228 113 KEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLG-KKIKDAVVTVPAYFNDAQRQAT 191 (514)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~-~~~~~vviTVPa~~~~~qr~~l 191 (514)
-...+. ..+| .+...++...+|+++++....... ....++++.||..-++-+|+++
T Consensus 64 i~aiRP--------------------mkdG---VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi 120 (342)
T COG1077 64 IVAIRP--------------------MKDG---VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAI 120 (342)
T ss_pred ceEEee--------------------cCCc---EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHH
Confidence 211111 1133 445667788888888887764333 4455799999999999999999
Q ss_pred HHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 010228 192 KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (514)
Q Consensus 192 ~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (514)
++|++.||...+.++.||.|||+..++.-..+. .-+|||+||||||++++.+.+-. ......+||+.+|+++.+
T Consensus 121 ~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~-G~mvvDIGgGTTevaVISlggiv-----~~~Sirv~GD~~De~Ii~ 194 (342)
T COG1077 121 KEAAESAGAREVYLIEEPMAAAIGAGLPIMEPT-GSMVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAIIV 194 (342)
T ss_pred HHHHHhccCceEEEeccHHHHHhcCCCcccCCC-CCEEEEeCCCceeEEEEEecCEE-----EEeeEEEecchhhHHHHH
Confidence 999999999999999999999999877665433 45899999999999999987654 344578999999999999
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc--------eEEEEEecccCCceeEEeeeHHHHHHHHHHHHh
Q 010228 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH--------QVRVEIESLFDGIDFSEPLTRARFEELNNDLFR 343 (514)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~--------~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~ 343 (514)
|+. ++|+.-+.+ +.+|++|....... +.++.-..+..|....++++.+++.+.+++.++
T Consensus 195 yvr----~~~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~ 261 (342)
T COG1077 195 YVR----KKYNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLN 261 (342)
T ss_pred HHH----HHhCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHH
Confidence 955 555665654 66899998875432 244444556677788899999999999999999
Q ss_pred hhhcHHHHHHHHcC--CCccCCCe-EEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 344 KTMGPVKKAMEDAG--LEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 344 ~i~~~i~~~l~~~~--~~~~~i~~-ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
+|.+.++..|++.. +..+-++. ++|+||+|.+..+.+.|.+.. +.++....+|-.+||+|+......+
T Consensus 262 ~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 262 GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhh
Confidence 99999999999853 33444455 999999999999999999998 7889999999999999998776544
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=1.7e-30 Score=246.00 Aligned_cols=204 Identities=25% Similarity=0.353 Sum_probs=173.8
Q ss_pred eeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCce
Q 010228 146 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEK 225 (514)
Q Consensus 146 ~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~ 225 (514)
.+..-+.++.+|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++...++.||.|++++|...
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 34556788999999999998888888899999999999999999999999999999999999999999998643
Q ss_pred eEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHH
Q 010228 226 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRA 305 (514)
Q Consensus 226 ~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 305 (514)
..+|+|+||||+|+++++. +.+. ..++..+||++||+.|.+.+ +.+. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~i~---~~~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GKVI---YSADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--CeEE---EEEeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999864 3322 23457899999999987653 2222 789999987
Q ss_pred hcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhH
Q 010228 306 LSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY 385 (514)
Q Consensus 306 Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~ 385 (514)
++ +.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|++++.+++.
T Consensus 165 ~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 54 245677899999999999999999864 457899999999999999999999
Q ss_pred cCCCCCCCCCChhhHHHhHHHH
Q 010228 386 FDGKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 386 f~~~~v~~~~~p~~aVa~GAa~ 407 (514)
| +.++..+.+|++++|.|||+
T Consensus 218 l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 L-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred h-CCCcccCCCCCeehhheeec
Confidence 9 78888899999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=8.8e-28 Score=231.51 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEE
Q 010228 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (514)
Q Consensus 150 ~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlV 229 (514)
.+.....|+++++.++.+.+.++..++++||++|+..+++.+.++++.||++...++.||.|++.+|... ..++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 5667788999999999888888899999999999999999999999999999999999999999987542 2589
Q ss_pred EEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC
Q 010228 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ 309 (514)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 309 (514)
+|+||||||+++++ ++.+. ..++.++||++||+.|++++ +.+ +.+||++|+.++
T Consensus 140 vDIGggtt~i~v~~--~g~~~---~~~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILK--DGKVV---YSADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEE--CCeEE---EEecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhccC--
Confidence 99999999999986 34322 23467999999999998774 222 277899988642
Q ss_pred ceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCC
Q 010228 310 HQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK 389 (514)
Q Consensus 310 ~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~ 389 (514)
++++++++++++++++.+.+++.++.. .++.|+|+||+|++|++++.+++.| +.
T Consensus 194 --------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~ 247 (267)
T PRK15080 194 --------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GL 247 (267)
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CC
Confidence 357789999999999999999999863 5789999999999999999999999 78
Q ss_pred CCCCCCChhhHHHhHHHHHH
Q 010228 390 EPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 390 ~v~~~~~p~~aVa~GAa~~a 409 (514)
++..+.+|++++|.|||+++
T Consensus 248 ~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CcccCCCchHHHHHHHHhhC
Confidence 88889999999999999864
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.93 E-value=1.6e-24 Score=220.19 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHH
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~i 265 (514)
...+.+.+|++.||+++..++.||.|+|++|... ......++|+|+||||||+++++. +.... ....++||+++
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~-~~~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG~~i 231 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTE-DEKELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCc-chhcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchHHHH
Confidence 4567788899999999999999999999988433 334567999999999999999973 33221 34468999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC------ceEEEEEecccCCceeEEeeeHHHHHHHHH
Q 010228 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNN 339 (514)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~ 339 (514)
|+.+.+.+. . ...+||++|+.++.. .+..+.++... .+....+++++|+++++
T Consensus 232 t~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ii~ 290 (371)
T TIGR01174 232 TKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEIIE 290 (371)
T ss_pred HHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHHHH
Confidence 999876531 1 137899999999763 23455555432 35567899999999999
Q ss_pred HHHhhhhcHHH-HHHHHcCCCccCCCe-EEEEcCCcCcHHHHHHHHhHcCCCCCCC------------CCChhhHHHhHH
Q 010228 340 DLFRKTMGPVK-KAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVAYGA 405 (514)
Q Consensus 340 ~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~l~~~l~~~f~~~~v~~------------~~~p~~aVa~GA 405 (514)
+.++++.+.++ +.|++++.. .+++. |+|+||+|++|++++++++.|+ .++.. ..+|.+++|.|.
T Consensus 291 ~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl 368 (371)
T TIGR01174 291 ARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTAVGL 368 (371)
T ss_pred HHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHHHHH
Confidence 99999999997 999998776 56776 9999999999999999999994 43311 237899999998
Q ss_pred HHH
Q 010228 406 AVQ 408 (514)
Q Consensus 406 a~~ 408 (514)
++|
T Consensus 369 ~~~ 371 (371)
T TIGR01174 369 LLY 371 (371)
T ss_pred HhC
Confidence 864
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.93 E-value=4.8e-24 Score=219.08 Aligned_cols=196 Identities=21% Similarity=0.270 Sum_probs=148.9
Q ss_pred HHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHH
Q 010228 188 RQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (514)
Q Consensus 188 r~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 267 (514)
.+.+.+|++.||++...++.||.|+|.++. ...+++..++++|+||||||+++++ ++.+. .....++||+++++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l-~~~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~it~ 241 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVL-TEDERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhc-ChhhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHHHHH
Confidence 444567999999999999999999999884 3344567799999999999999997 34322 23447899999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC------ceEEEEEecccCCceeEEeeeHHHHHHHHHHH
Q 010228 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ------HQVRVEIESLFDGIDFSEPLTRARFEELNNDL 341 (514)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~ 341 (514)
.|.+.+. .+ ..+||++|+.+... .+..+.++...+. ....+++.++.+++++.
T Consensus 242 dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~~r 300 (420)
T PRK09472 242 DIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIEPR 300 (420)
T ss_pred HHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHHHH
Confidence 9986531 11 27899999776432 2344555543222 23478999999999998
Q ss_pred HhhhhcHHHH-------HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC------------CCChhhHHH
Q 010228 342 FRKTMGPVKK-------AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK------------GVNPDEAVA 402 (514)
Q Consensus 342 ~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~------------~~~p~~aVa 402 (514)
++++++.+.+ .+.++++....++.|+|+||+|++|++++++++.|+ .++.. ..+|.+++|
T Consensus 301 ~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ata 379 (420)
T PRK09472 301 YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYSTA 379 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHHHH
Confidence 8888777765 445667777788999999999999999999999994 44321 248999999
Q ss_pred hHHHHHHHH
Q 010228 403 YGAAVQGGI 411 (514)
Q Consensus 403 ~GAa~~a~~ 411 (514)
.|+++|+..
T Consensus 380 ~Gl~~~~~~ 388 (420)
T PRK09472 380 VGLLHYGKE 388 (420)
T ss_pred HHHHHHhhh
Confidence 999999863
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.89 E-value=3.5e-21 Score=192.66 Aligned_cols=198 Identities=26% Similarity=0.420 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHH
Q 010228 187 QRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (514)
Q Consensus 187 qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 266 (514)
--+.+.+|.+++|+++..++.+|.|++.+. +..+++.-.++++|+||||||+++++ ++.+. ..+..++||++++
T Consensus 166 ~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~-L~~dEkelGv~lIDiG~GTTdIai~~--~G~l~---~~~~ipvgG~~vT 239 (418)
T COG0849 166 ILENLEKCVERAGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYK--NGALR---YTGVIPVGGDHVT 239 (418)
T ss_pred HHHHHHHHHHHhCCCeeeEEEehhhhhhhc-cCcccHhcCeEEEEeCCCcEEEEEEE--CCEEE---EEeeEeeCccHHH
Confidence 467788999999999999999999999887 66666788999999999999999998 44332 2445789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc------eEEEEEecccCCceeEEeeeHHHHHHHHHH
Q 010228 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH------QVRVEIESLFDGIDFSEPLTRARFEELNND 340 (514)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~itr~~~e~~~~~ 340 (514)
..|+.-|.- ++ ..||+.|..+.... +..+.++... .+...++++.++.+++++
T Consensus 240 ~DIa~~l~t--------~~-----------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg--~~~~~~~t~~~ls~II~a 298 (418)
T COG0849 240 KDIAKGLKT--------PF-----------EEAERIKIKYGSALISLADDEETIEVPSVG--SDIPRQVTRSELSEIIEA 298 (418)
T ss_pred HHHHHHhCC--------CH-----------HHHHHHHHHcCccccCcCCCcceEecccCC--CcccchhhHHHHHHHHHh
Confidence 999987432 21 78999999876433 3345555443 333678999999999999
Q ss_pred HHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCC--------C----CCChhhHHHhHHHHH
Q 010228 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN--------K----GVNPDEAVAYGAAVQ 408 (514)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~--------~----~~~p~~aVa~GAa~~ 408 (514)
.+++++.++++.|++.++...-...|+|+||++++|++.+..++.|. .++. - ..+|.++.|.|..++
T Consensus 299 R~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~ 377 (418)
T COG0849 299 RVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLLLY 377 (418)
T ss_pred hHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHHHH
Confidence 99999999999999999876777899999999999999999999994 3321 1 346899999999999
Q ss_pred HHHh
Q 010228 409 GGIL 412 (514)
Q Consensus 409 a~~~ 412 (514)
+...
T Consensus 378 ~~~~ 381 (418)
T COG0849 378 GALM 381 (418)
T ss_pred Hhhc
Confidence 9754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.75 E-value=2.4e-17 Score=167.95 Aligned_cols=302 Identities=18% Similarity=0.153 Sum_probs=190.0
Q ss_pred EEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC----------CcEEEcHHHHHhHhhCCCchhhHhhHhhCC
Q 010228 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD----------SERLIGEAAKNQAAVNPDRTIFDVKRLIGR 108 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~llg~ 108 (514)
|.||+||.++++++..++.+..+ +||+++... ...++|++|......
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~--------------- 58 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL--------------- 58 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC---------------
Confidence 78999999999999876644322 377776542 245677766432100
Q ss_pred CCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHH
Q 010228 109 KFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQR 188 (514)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr 188 (514)
...-..|+ .+| .+..-+....+++++...... .......+++++|..++..+|
T Consensus 59 --------~~~~~~P~---------------~~G---~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r 111 (371)
T cd00012 59 --------GLELIYPI---------------EHG---IVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNR 111 (371)
T ss_pred --------ceEEcccc---------------cCC---EEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHH
Confidence 00001111 022 222334555666666644221 122346799999999998888
Q ss_pred HHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHH
Q 010228 189 QATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (514)
Q Consensus 189 ~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 267 (514)
+.+.+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++|+++.+.. +.. +.......++||+++|+
T Consensus 112 ~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~ 182 (371)
T cd00012 112 EKTTEIMFETFNVPALYVAIQAVLSLYASGR------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTR 182 (371)
T ss_pred HHHHHHhhccCCCCEEEEechHHHHHHhcCC------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHH
Confidence 88876 5777999999999999999998864 57799999999999998873 322 22223446899999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceE--------------EEEEecccCCceeEEeeeHHH
Q 010228 268 RVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQV--------------RVEIESLFDGIDFSEPLTRAR 333 (514)
Q Consensus 268 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--------------~i~i~~~~~~~~~~~~itr~~ 333 (514)
.|.+++..+.. ..... .-...++.+|+.+...... ....-.+.++. .+.++.+.
T Consensus 183 ~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er 250 (371)
T cd00012 183 YLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNER 250 (371)
T ss_pred HHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHH
Confidence 99998754321 00111 1124466666664321100 00000111222 34455554
Q ss_pred H---HHHHHHH-----HhhhhcHHHHHHHHcCC--CccCCCeEEEEcCCcCcHHHHHHHHhHcCC---------CCCCCC
Q 010228 334 F---EELNNDL-----FRKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDG---------KEPNKG 394 (514)
Q Consensus 334 ~---e~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~---------~~v~~~ 394 (514)
| |.++.|. ...+.+.|.+.++.... ...-.+.|+|+||+|++|++.++|++.+.. ..+...
T Consensus 251 ~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~ 330 (371)
T cd00012 251 FRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAP 330 (371)
T ss_pred hhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccC
Confidence 4 3344442 33677888888877532 234468899999999999999999887731 123455
Q ss_pred CChhhHHHhHHHHHHHH
Q 010228 395 VNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 395 ~~p~~aVa~GAa~~a~~ 411 (514)
.+|..++.+||+++|..
T Consensus 331 ~~~~~~aw~G~si~as~ 347 (371)
T cd00012 331 PERKYSVWLGGSILASL 347 (371)
T ss_pred CCccccEEeCchhhcCc
Confidence 68899999999999853
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.73 E-value=6.6e-17 Score=164.85 Aligned_cols=300 Identities=18% Similarity=0.192 Sum_probs=186.9
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC---------cEEEcHHHHHhHhhCCCchhhHhhHhhC
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS---------ERLIGEAAKNQAAVNPDRTIFDVKRLIG 107 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~llg 107 (514)
..|+||+||.++++.+..+..|.++ +||+++...+ ..++|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 3699999999999998876655433 4888876532 245676653211 0
Q ss_pred CCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHH
Q 010228 108 RKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ 187 (514)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~q 187 (514)
.. .-..|+. +| .+...+....+++++...... .......+++|.|...+..+
T Consensus 59 ~~---------~~~~P~~---------------~G---~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~ 110 (373)
T smart00268 59 GL---------ELKYPIE---------------HG---IVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSN 110 (373)
T ss_pred Cc---------eecCCCc---------------CC---EEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHH
Confidence 00 0011211 22 233455666777777653211 12233578999999888999
Q ss_pred HHHHHHHH-HHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHH
Q 010228 188 RQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFD 266 (514)
Q Consensus 188 r~~l~~a~-~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 266 (514)
|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|+|+|+++|+++.+. ++.. +.......++||.++|
T Consensus 111 r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 111 REKILEIMFETFNFPALYIAIQAVLSLYASG------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHHHHHHhhccCCCCeEEEeccHHHHHHhCC------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHH
Confidence 99998865 5779999999999999999885 45679999999999999887 3332 2222233689999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc-------------------eEEEEEecccCCceeEE
Q 010228 267 QRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-------------------QVRVEIESLFDGIDFSE 327 (514)
Q Consensus 267 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-------------------~~~i~i~~~~~~~~~~~ 327 (514)
+.|.+++...-. ++ ... .-...++.+|+.+.... ..... +.++..+
T Consensus 182 ~~l~~~l~~~~~-~~--~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~~-- 246 (373)
T smart00268 182 DYLKELLSERGY-QF--NSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNTI-- 246 (373)
T ss_pred HHHHHHHHhcCC-CC--CcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCCCEE--
Confidence 999988754100 11 110 11133445555432110 01111 1233333
Q ss_pred eeeHHHH---HHHHHHH-----HhhhhcHHHHHHHHcCCC--ccCCCeEEEEcCCcCcHHHHHHHHhHcCC-------CC
Q 010228 328 PLTRARF---EELNNDL-----FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KE 390 (514)
Q Consensus 328 ~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l~~~l~~~f~~-------~~ 390 (514)
.+..+.+ |.++.|. ...+.+.|.+.|+++..+ ..-.+.|+|+||+|++|++.++|++.+.. ..
T Consensus 247 ~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~ 326 (373)
T smart00268 247 KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVK 326 (373)
T ss_pred EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeE
Confidence 3333333 3344442 246778888888775322 33346799999999999999999887721 12
Q ss_pred CCCCCChhhHHHhHHHHHHHH
Q 010228 391 PNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 391 v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+....++..++-.||+++|..
T Consensus 327 v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 327 VIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EecCCCCccceEeCcccccCc
Confidence 344557778999999888753
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.68 E-value=4e-15 Score=153.34 Aligned_cols=225 Identities=17% Similarity=0.113 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeEeechhhHHHHhhhhccCC----C
Q 010228 149 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKG----G 223 (514)
Q Consensus 149 ~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a-~~~aGl~~~~li~Ep~Aaal~~~~~~~~----~ 223 (514)
.-+....+++++..... ........+++|.|..++..+|+.+.+. .+..+++.+.+..+|.++++++...... .
T Consensus 80 dwd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 80 DWDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred CHHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCC
Confidence 33555566666543211 1122235689999999999999999775 5556999999999999999886332211 2
Q ss_pred ceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHH
Q 010228 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAK 303 (514)
Q Consensus 224 ~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 303 (514)
..+-+|||+|.++|+++.+.- |.. +.......++||.++|+.|.++|.++ +..+... .....++.+|
T Consensus 159 ~~tglVVDiG~~~T~i~PV~~--G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iK 225 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVVD--GYV-IGSSIKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIK 225 (414)
T ss_pred ceeEEEEECCCCceEEEEEEC--CEE-cccceEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHH
Confidence 345699999999999988763 332 11122235899999999999987532 1122111 0113455566
Q ss_pred HHhcCCc-----------------eEEEEEecccCCceeEEeeeHHHH---HHHHHHHH------hhhhcHHHHHHHHcC
Q 010228 304 RALSSQH-----------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF------RKTMGPVKKAMEDAG 357 (514)
Q Consensus 304 ~~Ls~~~-----------------~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~ 357 (514)
+.+.... ...+..+...++....+.+..+.| |-+|.|-+ ..+.+.|.+.|.++.
T Consensus 226 e~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~ 305 (414)
T PTZ00280 226 EKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP 305 (414)
T ss_pred HhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC
Confidence 6543211 011222222223444677777776 44555532 256677788887764
Q ss_pred CC--ccCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 010228 358 LE--KNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 358 ~~--~~~i~~ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
.+ ..-.++|+|+||+|.+|++.++|++.+.
T Consensus 306 ~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 306 IDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred hhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 32 3445789999999999999999988773
No 36
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.67 E-value=1.2e-16 Score=139.18 Aligned_cols=198 Identities=27% Similarity=0.396 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcC
Q 010228 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLG 233 (514)
Q Consensus 154 ~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~G 233 (514)
-.+.+++++.+++.++.+..+..-++|..-.....+...+..+.||+++...++||+|||.-..+... .|+|+|
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg------~VVDiG 148 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG------GVVDIG 148 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC------cEEEeC
Confidence 35678888999999998888888889988766667777888899999999999999999976655433 699999
Q ss_pred CCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEE
Q 010228 234 GGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVR 313 (514)
Q Consensus 234 ggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~ 313 (514)
||||-+++++-.+-.+ ..+.+.||..++.-|+-+ ++.++ +++|+.|+.-...
T Consensus 149 GGTTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~---- 200 (277)
T COG4820 149 GGTTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKG---- 200 (277)
T ss_pred CCcceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccc----
Confidence 9999999998543332 445788888876665533 44444 6777777642111
Q ss_pred EEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC
Q 010228 314 VEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK 393 (514)
Q Consensus 314 i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~ 393 (514)
++.-..+.|+++++.+.+.+.++..+ +..+.|+||+|.-|.+.+..++.| ..++..
T Consensus 201 ------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~ 256 (277)
T COG4820 201 ------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHL 256 (277)
T ss_pred ------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-cccccc
Confidence 11223457888888888888887644 567999999999999999999999 789999
Q ss_pred CCChhhHHHhHHHHHH
Q 010228 394 GVNPDEAVAYGAAVQG 409 (514)
Q Consensus 394 ~~~p~~aVa~GAa~~a 409 (514)
+..|.+..-.|.|+.+
T Consensus 257 P~~p~y~TPLgIA~sg 272 (277)
T COG4820 257 PQHPLYMTPLGIASSG 272 (277)
T ss_pred CCCcceechhhhhhcc
Confidence 9999888888877543
No 37
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.64 E-value=6.4e-14 Score=140.07 Aligned_cols=205 Identities=17% Similarity=0.209 Sum_probs=134.9
Q ss_pred EEEEcCCCCCHHH-HHHHHHHHHHc------------CCceeEeechhhHHHHhhhhccC-------CCceeEEEEEcCC
Q 010228 175 AVVTVPAYFNDAQ-RQATKDAGIIA------------GLNVARIINEPTAAAIAYGLDKK-------GGEKNILVFDLGG 234 (514)
Q Consensus 175 vviTVPa~~~~~q-r~~l~~a~~~a------------Gl~~~~li~Ep~Aaal~~~~~~~-------~~~~~vlVvD~Gg 234 (514)
++...|..+-..+ ++.+++..... -+..+.+++||.+|.+.+..... .....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458998875444 36676654321 12346789999999887755422 1445789999999
Q ss_pred CeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEE
Q 010228 235 GTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRV 314 (514)
Q Consensus 235 gT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 314 (514)
||||+++++ ++.+. ....+..+.|..++.+.+.+.+..+ .++..+.. ..++++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~~---------~~ie~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKK---EEGASITP---------YMLEKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhh---CCCCCCCH---------HHHHHH---HHcC---cE
Confidence 999999986 33332 2334457789999999988876422 22333321 122222 2111 11
Q ss_pred EEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCC
Q 010228 315 EIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG 394 (514)
Q Consensus 315 ~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~ 394 (514)
.+. .+.+ +.+ ++++.++++++++++.+.+...+.+ ..+++.|+|+||++++ +++.|++.|++. ...
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~ 319 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKA 319 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEc
Confidence 111 1111 122 3556778888888888888777753 2478999999999986 899999999743 566
Q ss_pred CChhhHHHhHHHHHHHHhcC
Q 010228 395 VNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 395 ~~p~~aVa~GAa~~a~~~~~ 414 (514)
.||..|.|+|...+|..+..
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 89999999999999976543
No 38
>PTZ00004 actin-2; Provisional
Probab=99.59 E-value=9e-14 Score=141.47 Aligned_cols=302 Identities=15% Similarity=0.149 Sum_probs=184.6
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC----------cEEEcHHHHHhHhhCCCchhhHhh
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVK 103 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k 103 (514)
+....|.||+|+.++++.++.++.|..+ +||++..... ..++|+++.... ..
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~----- 65 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----GI----- 65 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc-----cc-----
Confidence 4456799999999999999876655433 4777765322 234555442110 00
Q ss_pred HhhCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCC
Q 010228 104 RLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYF 183 (514)
Q Consensus 104 ~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~ 183 (514)
+ . -..|+ .+| .+..-+....+++++....- ........+++|-|..+
T Consensus 66 --~-----------~-l~~Pi---------------~~G---~i~d~d~~e~i~~~~~~~~l-~v~~~~~pvllte~~~~ 112 (378)
T PTZ00004 66 --L-----------T-LKYPI---------------EHG---IVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLN 112 (378)
T ss_pred --c-----------e-EcccC---------------cCC---EEcCHHHHHHHHHHHHHhhc-ccCCccCcceeecCCCC
Confidence 0 0 00111 122 22333445566666432110 11223456889999999
Q ss_pred CHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCch
Q 010228 184 NDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 262 (514)
Q Consensus 184 ~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG 262 (514)
+..+|+.+.+ ..+..+++.+.+..+|.+++++++. .+-+|+|+|.+.|+++.+. ++.. +.......++||
T Consensus 113 ~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~------~tglVVDiG~~~t~v~pV~--dG~~-l~~~~~~~~~GG 183 (378)
T PTZ00004 113 PKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYS-LPHAIHRLDVAG 183 (378)
T ss_pred cHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC------ceEEEEECCCCcEEEEEEE--CCEE-eecceeeecccH
Confidence 9999988866 5667899999999999999988753 4569999999999998776 3332 222233367999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC---------------c--eEEEEEecccCCcee
Q 010228 263 EDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ---------------H--QVRVEIESLFDGIDF 325 (514)
Q Consensus 263 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~---------------~--~~~i~i~~~~~~~~~ 325 (514)
.++++.|.+.+..+ +..+... . -...++..|+.+... . ..... +.+|..
T Consensus 184 ~~lt~~L~~lL~~~-----~~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~~- 249 (378)
T PTZ00004 184 RDLTEYMMKILHER-----GTTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGTI- 249 (378)
T ss_pred HHHHHHHHHHHHhc-----CCCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CCCCCE-
Confidence 99999999986432 1111111 0 112344455443211 0 11111 223433
Q ss_pred EEeeeHHHH---HHHHHHH------HhhhhcHHHHHHHHcCCC--ccCCCeEEEEcCCcCcHHHHHHHHhHcCC------
Q 010228 326 SEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG------ 388 (514)
Q Consensus 326 ~~~itr~~~---e~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l~~~l~~~f~~------ 388 (514)
+.+..+.| |-+|.|- ...+.++|.+.+.++..+ +.-.+.|+|+||+|.+|++.++|++.+..
T Consensus 250 -i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~ 328 (378)
T PTZ00004 250 -ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTM 328 (378)
T ss_pred -EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCc
Confidence 34555554 4456653 235667777887775432 33457899999999999999999887731
Q ss_pred -CCCCCCCChhhHHHhHHHHHHH
Q 010228 389 -KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 389 -~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
.++....++..++-+||++++.
T Consensus 329 ~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 329 KIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred cEEEecCCCCceeEEECcccccC
Confidence 1234455788899999998875
No 39
>PTZ00452 actin; Provisional
Probab=99.58 E-value=1.1e-13 Score=140.39 Aligned_cols=300 Identities=17% Similarity=0.170 Sum_probs=184.0
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC----------cEEEcHHHHHhHhhCCCchhhHhhHh
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----------ERLIGEAAKNQAAVNPDRTIFDVKRL 105 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~----------~~~~G~~A~~~~~~~~~~~~~~~k~l 105 (514)
...|-||+|+.+++++++.+..|..+ +||++..... ..++|++|....
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~-------------- 62 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR-------------- 62 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc--------------
Confidence 45799999999999999977766543 3777765422 234454432110
Q ss_pred hCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCH
Q 010228 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND 185 (514)
Q Consensus 106 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~ 185 (514)
+...+.-++.+|. +..-+....+++++..... ........+++|-|...+.
T Consensus 63 -------------------------~~~~l~~Pi~~G~---I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~ 113 (375)
T PTZ00452 63 -------------------------GVLAIKEPIQNGI---INSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSK 113 (375)
T ss_pred -------------------------cCcEEcccCcCCE---EcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCH
Confidence 0000000111332 2233344456665543211 1233346789999999999
Q ss_pred HHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHH
Q 010228 186 AQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (514)
Q Consensus 186 ~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (514)
.+|+.|.+ ..+..+++.+.+...|.+++++++. .+-+|+|+|.+.++++.+. +|.. +.......++||.+
T Consensus 114 ~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~------~tglVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~gG~~ 184 (375)
T PTZ00452 114 FNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK------TIGLVVDSGEGVTHCVPVF--EGHQ-IPQAITKINLAGRL 184 (375)
T ss_pred HHHHHHHHHHhhccCCceEEEechHHHHHHHCCC------ceeeeecCCCCcceEEEEE--CCEE-eccceEEeeccchH
Confidence 99999877 4566799999999999999988753 3569999999999998776 3332 22222235799999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc----------------eEEEEEecccCCceeEEe
Q 010228 265 FDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------------QVRVEIESLFDGIDFSEP 328 (514)
Q Consensus 265 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~i~~~~~~~~~~~~ 328 (514)
+++.|.+.|.++ +..+.... . ...++.+|+.+.... ..... +.+|. .+.
T Consensus 185 lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~ 249 (375)
T PTZ00452 185 CTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILT 249 (375)
T ss_pred HHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEE
Confidence 999998886431 11222111 0 122444454443110 01111 22333 345
Q ss_pred eeHHHH---HHHHHHHH-----hhhhcHHHHHHHHcCC--CccCCCeEEEEcCCcCcHHHHHHHHhHcCC-------CCC
Q 010228 329 LTRARF---EELNNDLF-----RKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDG-------KEP 391 (514)
Q Consensus 329 itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~-------~~v 391 (514)
+..+.| |-+|+|-+ ..+.+++.+.+.++.. ...-.++|+|+||+|.+|++.++|++.+.. .++
T Consensus 250 l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v 329 (375)
T PTZ00452 250 IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQV 329 (375)
T ss_pred eehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEE
Confidence 666666 44455533 3466777777777543 244567999999999999999999887621 123
Q ss_pred CCCCChhhHHHhHHHHHHH
Q 010228 392 NKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 392 ~~~~~p~~aVa~GAa~~a~ 410 (514)
..+.++..++-.|++++|.
T Consensus 330 ~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 330 AAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred ecCCCcceeEEECchhhcC
Confidence 4455677889999999885
No 40
>PTZ00281 actin; Provisional
Probab=99.57 E-value=6.1e-14 Score=142.52 Aligned_cols=236 Identities=15% Similarity=0.134 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEE
Q 010228 150 EEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 228 (514)
Q Consensus 150 ~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vl 228 (514)
-+....+++++..... ........+++|-|..++..+|+.|.+ ..+..+++.+.+..+|.+++++++. .+-+
T Consensus 80 wd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~------~tgl 152 (376)
T PTZ00281 80 WDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGI 152 (376)
T ss_pred HHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC------ceEE
Confidence 3444556666543211 122334578899999999999999977 6677899999999999999988753 3569
Q ss_pred EEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcC
Q 010228 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (514)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 308 (514)
|||+|.+.|.++-+.-... +.......++||.++++.|.+.|..+ +..+.. .. -...++.+|+.+..
T Consensus 153 VVDiG~~~t~v~PV~dG~~---~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~----~~~~~~~iKe~~c~ 219 (376)
T PTZ00281 153 VMDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-TA----EREIVRDIKEKLAY 219 (376)
T ss_pred EEECCCceEEEEEEEeccc---chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-HH----HHHHHHHHHHhcEE
Confidence 9999999999987763321 22222336799999999999886432 112211 00 01335566666432
Q ss_pred Cc----------------eEEEEEecccCCceeEEeeeHHHH---HHHHHHHH-----hhhhcHHHHHHHHcCCC--ccC
Q 010228 309 QH----------------QVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQ 362 (514)
Q Consensus 309 ~~----------------~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~ 362 (514)
.. ..... +.+|. .+.+..+.| |-+|+|-+ ..+.+.|.+.+.++... +.-
T Consensus 220 v~~d~~~~~~~~~~~~~~~~~y~---LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L 294 (376)
T PTZ00281 220 VALDFEAEMQTAASSSALEKSYE---LPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDL 294 (376)
T ss_pred ecCCchHHHHhhhcCcccceeEE---CCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHH
Confidence 11 01111 22333 345555554 45555533 25566777777765432 334
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhHcC----C---CCCCCCCChhhHHHhHHHHHHH
Q 010228 363 IDEIVLVGGSTRIPKVQQLLKDYFD----G---KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 363 i~~ViLvGG~s~~p~l~~~l~~~f~----~---~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
.+.|+|+||+|.+|++.++|++.+. . .++..+.++..++-+|++++|.
T Consensus 295 ~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 295 YGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 5789999999999999999888762 1 1234455778899999998885
No 41
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.55 E-value=1.1e-13 Score=142.28 Aligned_cols=312 Identities=18% Similarity=0.202 Sum_probs=180.8
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC-----cEEEcHHHHHhHhhCCCchhhHhhHhhCCC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-----ERLIGEAAKNQAAVNPDRTIFDVKRLIGRK 109 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~ 109 (514)
...+|-||+|+.+++++++.+..|..+ +||++..... ...+|..+... .+.
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~------------- 58 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSN------------- 58 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTG-------------
T ss_pred CCCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhh-------------
Confidence 346899999999999999866655433 3888776433 35677763221 000
Q ss_pred CCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHH
Q 010228 110 FEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQ 189 (514)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~ 189 (514)
+. +.-...+| .+...+....+++++.... -........++++.|..++..+|+
T Consensus 59 --------------~~---------~~~p~~~g---~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 59 --------------LE---------LRSPIENG---VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp --------------EE---------EEESEETT---EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHH
T ss_pred --------------ee---------eeeecccc---ccccccccccccccccccc-cccccccceeeeeccccCCchhhh
Confidence 00 00001122 2233345556666665532 111233457999999999999999
Q ss_pred HHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHH
Q 010228 190 ATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (514)
Q Consensus 190 ~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~ 268 (514)
.+.+ +.+..+++.+.++++|.+|+++++.. +-+|||+|.+.|.++.+. ++.. +.......++||.++++.
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~ 182 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEY 182 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHH
T ss_pred hhhhhhhcccccceeeeeecccccccccccc------cccccccceeeeeeeeee--eccc-cccccccccccHHHHHHH
Confidence 8877 55678999999999999999988654 459999999999998875 4432 111222357999999999
Q ss_pred HHHHHHHHH-H--HhcCCCCc----CCHHHHHHHHHHHHHHHHHhc---------------CCceEEEEEecccCCceeE
Q 010228 269 VMEYFIKLI-K--KKHGKDIS----KDKRAIGKLRREAERAKRALS---------------SQHQVRVEIESLFDGIDFS 326 (514)
Q Consensus 269 l~~~l~~~~-~--~~~~~~~~----~~~~~~~~L~~~~e~~K~~Ls---------------~~~~~~i~i~~~~~~~~~~ 326 (514)
|.+.+.++- . ..+..... ........-....+.+|+.+. ........+ .++. .
T Consensus 183 l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~--~ 257 (393)
T PF00022_consen 183 LKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ--T 257 (393)
T ss_dssp HHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--E
T ss_pred HHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc--c
Confidence 999877631 0 00000000 000001111233344444321 112223322 2333 4
Q ss_pred EeeeHHHH---HHHHHHHHh------------hhhcHHHHHHHHcCCC--ccCCCeEEEEcCCcCcHHHHHHHHhHcCC-
Q 010228 327 EPLTRARF---EELNNDLFR------------KTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDG- 388 (514)
Q Consensus 327 ~~itr~~~---e~~~~~~~~------------~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l~~~l~~~f~~- 388 (514)
+.+..+.| |-+|.|... .+.++|.+.+.++..+ +.-.+.|+|+||+|++|++.++|.+.+..
T Consensus 258 i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~ 337 (393)
T PF00022_consen 258 IILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSL 337 (393)
T ss_dssp EEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhh
Confidence 44555444 233333221 4666777777765432 22347899999999999999999887732
Q ss_pred ------CCCCCCC-ChhhHHHhHHHHHHHH
Q 010228 389 ------KEPNKGV-NPDEAVAYGAAVQGGI 411 (514)
Q Consensus 389 ------~~v~~~~-~p~~aVa~GAa~~a~~ 411 (514)
.++.... +|..++-.||+++|..
T Consensus 338 ~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 338 LPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp SGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhccccceeccCchhhhhcccccceeeecc
Confidence 2334445 8999999999999864
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.53 E-value=1.9e-12 Score=130.76 Aligned_cols=179 Identities=17% Similarity=0.204 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhhHHHHhhh-----hccCCCce-eEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCC
Q 010228 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-----LDKKGGEK-NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDT 258 (514)
Q Consensus 185 ~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~-----~~~~~~~~-~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~ 258 (514)
....+.+.++++.||++...+..+|.|.+-.+. ........ .++++|+|+++|++++++-....+ .+..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEEe
Confidence 467888899999999999999999999877663 22222333 489999999999999997433222 3447
Q ss_pred CCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHH
Q 010228 259 HLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELN 338 (514)
Q Consensus 259 ~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~ 338 (514)
.+||.++++.+.+. ++.+. .+||+.|........ .-.+++
T Consensus 217 ~~G~~~i~~~i~~~--------~~~~~-----------~~Ae~~k~~~~~~~~---------------------~~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRA--------YGLNP-----------EEAGEAKQQGGLPLL---------------------YDPEVL 256 (348)
T ss_pred echHHHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCc---------------------hhHHHH
Confidence 89999999988754 22222 678888875322110 012345
Q ss_pred HHHHhhhhcHHHHHHHHc--CCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC-------------------CCCh
Q 010228 339 NDLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK-------------------GVNP 397 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~-------------------~~~p 397 (514)
++.++++...|.+.++-. ......++.|+|+||+++++.|.+.+++.| +.++.. ...|
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~~ 335 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDAP 335 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhhH
Confidence 666666667777776532 223346899999999999999999999999 443321 1346
Q ss_pred hhHHHhHHHHHH
Q 010228 398 DEAVAYGAAVQG 409 (514)
Q Consensus 398 ~~aVa~GAa~~a 409 (514)
..++|.|+|+++
T Consensus 336 ~~~~a~Glalr~ 347 (348)
T TIGR01175 336 ALMTALGLALRG 347 (348)
T ss_pred HHHHHhhHhhcC
Confidence 778888888764
No 43
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.52 E-value=1.2e-12 Score=130.28 Aligned_cols=206 Identities=20% Similarity=0.216 Sum_probs=128.8
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc---------CCceeEeechhhHHHHhhhhccC---CCceeEEEEEcCCCeeE
Q 010228 171 KIKDAVVTVPAYFNDAQRQATKDAGIIA---------GLNVARIINEPTAAAIAYGLDKK---GGEKNILVFDLGGGTFD 238 (514)
Q Consensus 171 ~~~~vviTVPa~~~~~qr~~l~~a~~~a---------Gl~~~~li~Ep~Aaal~~~~~~~---~~~~~vlVvD~GggT~d 238 (514)
.+..+|+..|..+...+++.+++..... -+..+.+++||.+|.+.+..... .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888999998876532 33557789999999887754321 15667899999999999
Q ss_pred EEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Q 010228 239 VSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIES 318 (514)
Q Consensus 239 vsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~ 318 (514)
+.++. +... +....+....|..++-+.+.+.+. ++++.+...+.. ..+++ |.......+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~----~~~g~~~~~~~~-------~i~~~---l~~g~~~~~---- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEIS----KDIGTPAYRDID-------RIDLA---LRTGKQPRI---- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHH----hhcCCCCccCHH-------HHHHH---HHhCCceee----
Confidence 98774 4443 334455567888888777777654 444444111111 11211 111110000
Q ss_pred ccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChh
Q 010228 319 LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPD 398 (514)
Q Consensus 319 ~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~ 398 (514)
.+.. +.|+ +.++ ..+..++++...+.+.+. ...+++.|+|+||++. .+++.|++.||...+....||.
T Consensus 240 --~gk~--~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKP--VDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --ccee--cCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 1111 1122 1112 223333333333333331 1245889999999987 7789999999876666678999
Q ss_pred hHHHhHHHHHH
Q 010228 399 EAVAYGAAVQG 409 (514)
Q Consensus 399 ~aVa~GAa~~a 409 (514)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999987765
No 44
>PTZ00466 actin-like protein; Provisional
Probab=99.52 E-value=5.7e-13 Score=135.21 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeE
Q 010228 149 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNI 227 (514)
Q Consensus 149 ~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~v 227 (514)
.-+....+++++.+... .......+++|-|..++..+|+.|.+ ..+..+++.+.+.++|.+++++++. .+-
T Consensus 85 dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~------~tg 156 (380)
T PTZ00466 85 NWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK------TNG 156 (380)
T ss_pred CHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC------ceE
Confidence 33445555555543211 12234568899999999999999866 5667899999999999999988753 466
Q ss_pred EEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhc
Q 010228 228 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS 307 (514)
Q Consensus 228 lVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 307 (514)
+|+|+|.+.|.++.+. ++.. +.......++||.++++.|.+.+.+. +..+.. . .-...++.+|+.+.
T Consensus 157 lVVD~G~~~t~v~PV~--~G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c 223 (380)
T PTZ00466 157 TVLDCGDGVCHCVSIY--EGYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCC 223 (380)
T ss_pred EEEeCCCCceEEEEEE--CCEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCe
Confidence 9999999999998776 3332 22222335899999999999886431 111111 0 11233455555542
Q ss_pred CC-------------ceEEEEEecccCCceeEEeeeHHHH---HHHHHHHH-----hhhhcHHHHHHHHcCCC--ccCCC
Q 010228 308 SQ-------------HQVRVEIESLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQID 364 (514)
Q Consensus 308 ~~-------------~~~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~ 364 (514)
.. ....... .+.+|. .+.+..+.| |-+|.|-+ ..+.++|.+.+.++..+ +.-..
T Consensus 224 ~v~~d~~~e~~~~~~~~~~~~y-~LPdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~ 300 (380)
T PTZ00466 224 YVSFNMNKEKNSSEKALTTLPY-ILPDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYS 300 (380)
T ss_pred EecCChHHHHhhccccccceeE-ECCCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhh
Confidence 11 0000111 122333 345566665 44455532 24567777777775432 34457
Q ss_pred eEEEEcCCcCcHHHHHHHHhHcCC-------CCCCCCCChhhHHHhHHHHHHH
Q 010228 365 EIVLVGGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 365 ~ViLvGG~s~~p~l~~~l~~~f~~-------~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+|+|+||+|.+|++.++|++.+.. .++..+.++..++-+|++++|.
T Consensus 301 nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 301 HIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred cEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 899999999999999999887731 1244455778899999999885
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.44 E-value=2.7e-12 Score=128.87 Aligned_cols=179 Identities=21% Similarity=0.283 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhcc-----CCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCC
Q 010228 185 DAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK-----KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTH 259 (514)
Q Consensus 185 ~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~-----~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~ 259 (514)
....+...++++.||++...+=-+|.|.+-.+.... ....+.++++|+|+.++.++++. ++.... .+...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEe
Confidence 356777888999999999888777777665554421 11346799999999999999988 444322 33368
Q ss_pred CchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHH
Q 010228 260 LGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNN 339 (514)
Q Consensus 260 ~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~ 339 (514)
+||.++++.+.+.+. .+. .++|+.|..-+-. .+...+.++
T Consensus 210 ~G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~---------------------~~~~~~~l~ 249 (340)
T PF11104_consen 210 IGGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLP---------------------EEYDQDALR 249 (340)
T ss_dssp -SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHH
T ss_pred eCHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCC---------------------cchHHHHHH
Confidence 999999999987632 211 6677777652110 022345566
Q ss_pred HHHhhhhcHHHHHHHH--cCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCC---------CCC----------Chh
Q 010228 340 DLFRKTMGPVKKAMED--AGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN---------KGV----------NPD 398 (514)
Q Consensus 340 ~~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~---------~~~----------~p~ 398 (514)
+.++++.+.|.+.++- .......|+.|+|+||++++++|.+.|++.+ +.++. ... .|.
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~ 328 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQ 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhH
Confidence 6666677777776662 2234557999999999999999999999999 44331 111 367
Q ss_pred hHHHhHHHHHH
Q 010228 399 EAVAYGAAVQG 409 (514)
Q Consensus 399 ~aVa~GAa~~a 409 (514)
.++|.|+|+++
T Consensus 329 ~avA~GLAlR~ 339 (340)
T PF11104_consen 329 FAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcC
Confidence 89999999875
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.29 E-value=5.1e-11 Score=118.22 Aligned_cols=174 Identities=20% Similarity=0.326 Sum_probs=97.2
Q ss_pred ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHh
Q 010228 201 NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKK 280 (514)
Q Consensus 201 ~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~ 280 (514)
..+.+++||.||.+.+..... +...++|+|+||+|+|++++. ++.-.+....+...+|-..+-+.+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~-~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~---- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD-EDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA---- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS--TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT------
T ss_pred eeEEEEcccHHHHHHHHHhhc-ccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh----
Confidence 457789999999998755522 346789999999999999886 2222222334456789988888887765431
Q ss_pred cCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCc
Q 010228 281 HGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360 (514)
Q Consensus 281 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~ 360 (514)
+...+ ......+.... .-+..+.. .....+ ..+++.++++..++++.+.|.+.+.+ .
T Consensus 214 -~~~~s--~~~~~~ii~~~-~~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~----~ 270 (318)
T PF06406_consen 214 -GIDTS--ELQIDDIIRNR-KDKGYLRQ----------VINDED-----VIDDVSEVIEEAVEELINRILRELGD----F 270 (318)
T ss_dssp -SBHHH--HHHHHHHHHTT-T-HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred -cCCCc--HHHHHHHHHhh-hccceecc----------cccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----h
Confidence 10000 00011111100 00000000 000000 12334444444444444444444432 2
Q ss_pred cCCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCCChhhHHHhHHH
Q 010228 361 NQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAA 406 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~~p~~aVa~GAa 406 (514)
.+++.|+++||++. .+.+.|++.|+ ..++....+|+.|.|+|-+
T Consensus 271 ~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 271 SDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp -S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 46789999999976 78999999985 3467788899999999975
No 47
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.28 E-value=2.5e-10 Score=109.63 Aligned_cols=182 Identities=16% Similarity=0.158 Sum_probs=119.2
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEe----CC-----cEEEcHHHHHhHhhCCCchhhHhhHhh
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT----DS-----ERLIGEAAKNQAAVNPDRTIFDVKRLI 106 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~----~~-----~~~~G~~A~~~~~~~~~~~~~~~k~ll 106 (514)
-..|-||.|+-.+.+.|+..+-+..+ +||++... .+ ..+++..|..
T Consensus 11 v~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~----------------- 65 (426)
T KOG0679|consen 11 VSALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIH----------------- 65 (426)
T ss_pred cceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhcc-----------------
Confidence 35688999999999999877755543 48877641 11 2345544321
Q ss_pred CCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHH
Q 010228 107 GRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDA 186 (514)
Q Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~ 186 (514)
.+.++.++...+ .+|-. ..-|+..+..++..+.-. .....-.-+++|-|+.=+.+
T Consensus 66 -~pr~gmEv~~~i--------------------~nGlv---~dWD~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~ 120 (426)
T KOG0679|consen 66 -VPRPGMEVKTPI--------------------KNGLV---EDWDLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRA 120 (426)
T ss_pred -CCCCCCeeccch--------------------hcCCc---ccHHHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHH
Confidence 111111111111 13322 233455555555553111 12233356899999877788
Q ss_pred HHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHH
Q 010228 187 QRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (514)
Q Consensus 187 qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~i 265 (514)
.|+.+.+ +.+...++...++.+|+|+|++.+ ..+.||+|+|++++.++-+. +|.+-..+... .++||+.+
T Consensus 121 ~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G------rstalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl 191 (426)
T KOG0679|consen 121 NREKLTELMFEKLNVPAFYLAKTAVCTAFANG------RSTALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFL 191 (426)
T ss_pred HHHHHHHHHHhhcCCceEEEechHHHHHHhcC------CCceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHH
Confidence 8888766 677889999999999999999886 45679999999999999876 44333333333 68999999
Q ss_pred HHHHHHHHHHH
Q 010228 266 DQRVMEYFIKL 276 (514)
Q Consensus 266 d~~l~~~l~~~ 276 (514)
+..+.+.|..+
T Consensus 192 ~~~~~q~l~~~ 202 (426)
T KOG0679|consen 192 NDQCRQLLEPK 202 (426)
T ss_pred HHHHHHHHhhc
Confidence 99999998765
No 48
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.17 E-value=1.3e-09 Score=111.37 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEE
Q 010228 172 IKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFE 250 (514)
Q Consensus 172 ~~~vviTVPa~~~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~ 250 (514)
-..+++|-|..+....|+.+.+ +++...++.+.+..++.+++++.+... .+.+|+|+|.+.|+++-+...-.
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~----~~g~ViD~G~~~t~v~PV~DG~~--- 178 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD----ETGLVIDSGDSVTHVIPVVDGIV--- 178 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC----CceEEEEcCCCceeeEeeecccc---
Confidence 3579999999999999988866 677788899999999999998876432 46799999999999998764321
Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHH
Q 010228 251 VLSTNGDTHLGGEDFDQRVMEYFIKL 276 (514)
Q Consensus 251 v~~~~~~~~~GG~~id~~l~~~l~~~ 276 (514)
+........+||++++..|.+.|.+.
T Consensus 179 l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 179 LPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred ccccceeeecCcHHHHHHHHHHHhhc
Confidence 22223336799999999999887763
No 49
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=7.9e-09 Score=98.11 Aligned_cols=156 Identities=18% Similarity=0.233 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccC-----CCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCC
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-----GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHL 260 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~-----~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~ 260 (514)
+..+....|++.||++...+=-|.-|.--+|..... ..--+++|+|+|+..+.+.++.-....+ ....++
T Consensus 149 E~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~~ 223 (354)
T COG4972 149 EVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVPV 223 (354)
T ss_pred hhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----EeeccC
Confidence 345566789999999998888888888777752211 1223368999999999999998554443 445789
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHH
Q 010228 261 GGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNND 340 (514)
Q Consensus 261 GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~ 340 (514)
||+.+++.+.+. ++.+. .+++.+|....... +.-.++..+
T Consensus 224 g~~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~ 263 (354)
T COG4972 224 GTDQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRP 263 (354)
T ss_pred cHHHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHH
Confidence 999999998765 33333 55667776543221 222455666
Q ss_pred HHhhhhcHHHHHHHHc--CCCccCCCeEEEEcCCcCcHHHHHHHHhHc
Q 010228 341 LFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (514)
Q Consensus 341 ~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f 386 (514)
+++++.+.|.+.|+-. .-...+|++|+|.||++.+.+|.+++.+.+
T Consensus 264 f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 264 FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 6666666666666532 123457999999999999999999999988
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.14 E-value=3.8e-09 Score=101.22 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=108.5
Q ss_pred EeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 010228 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (514)
Q Consensus 204 ~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~ 283 (514)
..++|.+|.+.+....... .-.|+|+||..+.+..++ ++...-.........|+..|.+.+++.+ +.
T Consensus 73 ~~~~ei~~~~~g~~~~~~~---~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l--------~~ 139 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE---ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL--------GV 139 (248)
T ss_pred CceEEhhHHHHHHHHHCCC---CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc--------CC
Confidence 3677888877655433321 225999999999988887 4554444455656778887777776653 33
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHhc----CCceEEEEEec-ccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCC
Q 010228 284 DISKDKRAIGKLRREAERAKRALS----SQHQVRVEIES-LFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL 358 (514)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~Ls----~~~~~~i~i~~-~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~ 358 (514)
++ ++++.++..-. -+..+.+..+. .... .....+ .++++..+++.+...+.+.+...+
T Consensus 140 ~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~---~~di~~~~~~~va~~i~~~~~~~~- 202 (248)
T TIGR00241 140 SV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVK---KEDILAGVYESIAERVAEMLQRLK- 202 (248)
T ss_pred CH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCC---HHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 32 33344333311 11123332211 0000 000112 356677777777777777665532
Q ss_pred CccCCC-eEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHH
Q 010228 359 EKNQID-EIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 359 ~~~~i~-~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 408 (514)
++ .|+++||.+++|++.+.+++.+ +.++..+.+|..+.|+|||++
T Consensus 203 ----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 ----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred ----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 7999999999999999999999 788888999999999999973
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.03 E-value=5.5e-08 Score=93.12 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=99.3
Q ss_pred EeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCc-hHHHHHHHHHHHHHHHHHhcC
Q 010228 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG-GEDFDQRVMEYFIKLIKKKHG 282 (514)
Q Consensus 204 ~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~G-G~~id~~l~~~l~~~~~~~~~ 282 (514)
..++|-+|.+........ ++.-.|+|+||-.+-+..+.- ++.+.-........-| |+.++. +++. .+
T Consensus 106 ~~v~EItaha~Ga~~~~p--p~v~tIIDIGGQDsK~I~~d~-~G~v~dF~MNdkCAAGTGrFLE~-~A~~--------Lg 173 (293)
T TIGR03192 106 KAITEIACHARGANYMGG--NAVRTILDMGGQDCKAIHCDE-KGKVTNFLMNDKCAAGTGRGMEV-ISDL--------MQ 173 (293)
T ss_pred cceeeHHHHHHHHHHhcC--CCCCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccccHHHHH-HHHH--------cC
Confidence 458999998876644321 123379999998777665532 3433333333323333 444433 3332 23
Q ss_pred CCCcCCHHHHHHHHHHHHHHH-HHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCcc
Q 010228 283 KDISKDKRAIGKLRREAERAK-RALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKN 361 (514)
Q Consensus 283 ~~~~~~~~~~~~L~~~~e~~K-~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~ 361 (514)
.++. .+..+ +.+.+ ....-+..+.+.-++-.- .-..--.++ +++...+...+.+.+...+++.++.
T Consensus 174 i~le----el~~~---a~~~~~~p~~Iss~CtVFAeSevi-~l~~~G~~~---edI~aGl~~sia~rv~~~~~~~~i~-- 240 (293)
T TIGR03192 174 IPIA----DLGPR---SFDVETEPEAVSSICVVFAKSEAL-GLLKAGYTK---NMVIAAYCQAMAERVVSLLERIGVE-- 240 (293)
T ss_pred CCHH----HHHHH---HHhcCCCCCCcCCcceEeccHhHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHhcccCCC--
Confidence 3321 11111 11111 111112223333221000 000111233 4556666666666666666554332
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCC-CCCChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN-KGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~-~~~~p~~aVa~GAa~~a~~ 411 (514)
+.|+|+||.++.|.+++.+++.+ +.++. .+.+|+.+.|.|||++|..
T Consensus 241 --~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 --EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred --CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999999 66766 5778999999999999853
No 52
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.83 E-value=1.7e-07 Score=93.16 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhcHHHH-HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHH
Q 010228 335 EELNNDLFRKTMGPVKK-AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
++++..+...+.+.+.. ++++.+.. +.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|.|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 55566666666666654 34443322 35999999999999999999999 78899999999999999999884
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.78 E-value=9.1e-09 Score=103.50 Aligned_cols=83 Identities=17% Similarity=0.323 Sum_probs=58.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHH------------cCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEE
Q 010228 174 DAVVTVPAYFNDAQRQATKDAGII------------AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSI 241 (514)
Q Consensus 174 ~vviTVPa~~~~~qr~~l~~a~~~------------aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv 241 (514)
-.+||.++. .++.++++++. ||++...++. |.|++.+.. .. +++..++++|+|||||++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-se-Eke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-SE-ERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-hh-hccCceEEEEeCCCceEEEE
Confidence 457788765 45556666665 5666555555 999988775 33 57888999999999999999
Q ss_pred EEEeCCEEEEEEecCCCCCchHHHHHH
Q 010228 242 LTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (514)
Q Consensus 242 ~~~~~~~~~v~~~~~~~~~GG~~id~~ 268 (514)
++-..-. ..+..++||+.++..
T Consensus 163 f~~G~l~-----~T~~l~vGG~~IT~D 184 (475)
T PRK10719 163 FDAGKVI-----DTACLNVGGRLIETD 184 (475)
T ss_pred EECCEEE-----EEEEEecccceEEEC
Confidence 9843222 244478899877543
No 54
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.77 E-value=5.7e-07 Score=85.02 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=96.5
Q ss_pred eechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCc-hHHHHHHHHHHHHHHHHHhcCC
Q 010228 205 IINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG-GEDFDQRVMEYFIKLIKKKHGK 283 (514)
Q Consensus 205 li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~G-G~~id~~l~~~l~~~~~~~~~~ 283 (514)
.++|-+|.+.+...... +.-.|+|+||--+-+..+.- ++.+.-.....-..-| |+.++.. ++. .+.
T Consensus 80 ~vtEIt~ha~GA~~~~p---~~~tIiDIGGQD~K~I~~~~-~G~v~~f~MNdkCAAGTG~FLe~~-A~~--------L~i 146 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP---EARAVLDIGALHGRAIRMDE-RGKVEAYKMTSQCASGSGQFLENI-ARY--------LGI 146 (262)
T ss_pred CeeEEeHHHHHHHHHCC---CCCEEEEeCCCceEEEEEcC-CCcEeeEEecCcccccccHHHHHH-HHH--------hCC
Confidence 35688887776543322 23379999999887644432 3433333333323333 4443332 322 233
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCC
Q 010228 284 DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQI 363 (514)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i 363 (514)
++. .|-..+.+++....-+..+.+.-++-.- .-..--.++ ++++..+.+.+.+.+...+++.+.. -
T Consensus 147 ~le-------el~~~a~~~~~~~~iss~CtVFaeSevi-~~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~---~ 212 (262)
T TIGR02261 147 AQD-------EIGSLSQQADNPEKVSGICAVLAETDVI-NMVSRGISA---PNILKGIHESMADRLAKLLKSLGAL---D 212 (262)
T ss_pred CHH-------HHHHHHhcCCCCCCcCCCceEEchhhHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC---C
Confidence 321 1112222332222222333333321000 000011233 5566666777777666666654321 1
Q ss_pred CeEEEEcCCcCcHHHHHHHHhHcCCCC----CCCCCChhhHHHhHHHHHH
Q 010228 364 DEIVLVGGSTRIPKVQQLLKDYFDGKE----PNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 364 ~~ViLvGG~s~~p~l~~~l~~~f~~~~----v~~~~~p~~aVa~GAa~~a 409 (514)
+.|+++||.++.+.+.+.+++.+++.+ +..+.+|+.+-|.|||+++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 359999999999999999999884322 5556789999999999874
No 55
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.77 E-value=5.6e-07 Score=88.54 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=101.6
Q ss_pred EeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Q 010228 204 RIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK 283 (514)
Q Consensus 204 ~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~ 283 (514)
..++|.+|-+.+...... +.-.|+|+||-.+-+..+.- ++.+.-........-|.-.|=+.+++. .+.
T Consensus 249 ~vitEItcHA~GA~~l~P---~vrTIIDIGGQDsK~I~ld~-~G~V~dF~MNDKCAAGTGrFLE~mA~~--------Lgi 316 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP---GTRTVLDIGGQDTKGIQIDD-HGIVENFQMNDRCAAGCGRYLGYIADE--------MNM 316 (432)
T ss_pred ceeeeHHHHHHHHHHHCC---CCCEEEEeCCCceEEEEEcC-CCcEeeeeecCcccccchHHHHHHHHH--------cCC
Confidence 466999998887644432 33379999999887644432 343333333332333333332222222 333
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCC
Q 010228 284 DISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQI 363 (514)
Q Consensus 284 ~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i 363 (514)
++. .|-..+.+.+....-+..+.+.-++-.- .-..--.++ ++++..+...+...+...+.+.. ..-
T Consensus 317 ~le-------El~~lA~~a~~pv~ISS~CtVFAESEVI-slla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~---~i~ 382 (432)
T TIGR02259 317 GLH-------ELGPLAMKSSKPARINSTCTVFAGAELR-DRLALGDKR---EDILAGLHRAIILRAISIISRSG---GIT 382 (432)
T ss_pred CHH-------HHHHHHhcCCCCCCcCCcceEEehHHHH-HHHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc---CCC
Confidence 331 1222233333333223334443321000 000111233 45566666666666666666542 112
Q ss_pred CeEEEEcCCcCcHHHHHHHHhHcC----CCCCCCCCChhhHHHhHHHHHH
Q 010228 364 DEIVLVGGSTRIPKVQQLLKDYFD----GKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 364 ~~ViLvGG~s~~p~l~~~l~~~f~----~~~v~~~~~p~~aVa~GAa~~a 409 (514)
..|+++||.++.+.+.+.|++.+. +.++..+.+|+.+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 469999999999999999999994 4567788999999999999875
No 56
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.75 E-value=5e-08 Score=96.40 Aligned_cols=233 Identities=18% Similarity=0.185 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEc
Q 010228 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDL 232 (514)
Q Consensus 154 ~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a-~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~ 232 (514)
..+.+++...-.. .......+++|-|..+....|+.|.+. .+.-+.+.+.+ .-.|..++++ ..+-+|+|+
T Consensus 82 e~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g------~ttG~VvD~ 152 (372)
T KOG0676|consen 82 EKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASG------RTTGLVVDS 152 (372)
T ss_pred HHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcC------CeeEEEEEc
Confidence 5666666522111 122346799999999999999998875 44445554444 2233333343 234599999
Q ss_pred CCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc--
Q 010228 233 GGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-- 310 (514)
Q Consensus 233 GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-- 310 (514)
|.|-+++.-+.- + +.+.+......+||.++++.+...|.+ .+........ ++-++.+|+.+....
T Consensus 153 G~gvt~~vPI~e--G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~~-----~eIv~diKeklCyvald 219 (372)
T KOG0676|consen 153 GDGVTHVVPIYE--G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSAE-----FEIVRDIKEKLCYVALD 219 (372)
T ss_pred CCCceeeeeccc--c-cccchhhheecccchhhHHHHHHHHHh-----cccccccccH-----HHHHHHhHhhhcccccc
Confidence 999887765542 2 223333445789999999977766654 2222221110 122334444432111
Q ss_pred ----------eEEEEEe-cccCCceeEEeeeHHHH---HHHHHHHH-----hhhhcHHHHHHHHc--CCCccCCCeEEEE
Q 010228 311 ----------QVRVEIE-SLFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDA--GLEKNQIDEIVLV 369 (514)
Q Consensus 311 ----------~~~i~i~-~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~ViLv 369 (514)
+..+... .+.++.. +.+..+.| |-+++|-+ ..+.+.+-..+-++ ++.+.-..+|+|+
T Consensus 220 ~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLs 297 (372)
T KOG0676|consen 220 FEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLS 297 (372)
T ss_pred cchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEe
Confidence 1111111 1223322 44444444 33444432 23334444444443 3334456789999
Q ss_pred cCCcCcHHHHHHHHhHcCC-------CCCCCCCChhhHHHhHHHHHHH
Q 010228 370 GGSTRIPKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 370 GG~s~~p~l~~~l~~~f~~-------~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
||++..|++.+++.+.... .++..+++...++-.|+.+.|.
T Consensus 298 GGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 298 GGTTMFPGLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred CCcccchhHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 9999999999998887631 1233444444677788877764
No 57
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.68 E-value=4.3e-06 Score=91.15 Aligned_cols=323 Identities=20% Similarity=0.307 Sum_probs=183.9
Q ss_pred EEEcHHHHHhHhh----CCCchhhHhhHhh--------CCCCCCHHHHh----hhccCCeE-EecCCCcceEEE-EEe--
Q 010228 81 RLIGEAAKNQAAV----NPDRTIFDVKRLI--------GRKFEDKEVQR----DMKLAPYK-IVNRDGKPYIQV-QIR-- 140 (514)
Q Consensus 81 ~~~G~~A~~~~~~----~~~~~~~~~k~ll--------g~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~v-~~~-- 140 (514)
..+|.+|...... ....-+++.||+| |..++...... .....|+. .++..|.+...+ ...
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 4588888765432 2333466778888 22232111100 11122322 236667765544 110
Q ss_pred -CCceeeeCHHHHHHHHHHHHHHHHHhhhCC--------------CCCcEEEEcCCCCCHHHHHHHHHHHHHc-------
Q 010228 141 -DGETKVFSPEEISAMILTKMKETAEAFLGK--------------KIKDAVVTVPAYFNDAQRQATKDAGIIA------- 198 (514)
Q Consensus 141 -~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~vviTVPa~~~~~qr~~l~~a~~~a------- 198 (514)
......+|-..+..++|..+..+|..+.+. ...++++|+|......+|+.+++.++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 112335677888999999998888665532 2457999999999999999998877764
Q ss_pred -CCc--------------------eeE-eechhhHHHHhhhhcc------------------CC----------CceeEE
Q 010228 199 -GLN--------------------VAR-IINEPTAAAIAYGLDK------------------KG----------GEKNIL 228 (514)
Q Consensus 199 -Gl~--------------------~~~-li~Ep~Aaal~~~~~~------------------~~----------~~~~vl 228 (514)
|.. .+. =-+|.+|.-+-|.++. .. +.-++.
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 431 111 1466776665553211 00 234688
Q ss_pred EEEcCCCeeEEEEEEEe----CC-EEEE----EEecCCCCCchHHHHHHHHHH-HHHHHHHh----------------cC
Q 010228 229 VFDLGGGTFDVSILTID----NG-VFEV----LSTNGDTHLGGEDFDQRVMEY-FIKLIKKK----------------HG 282 (514)
Q Consensus 229 VvD~GggT~dvsv~~~~----~~-~~~v----~~~~~~~~~GG~~id~~l~~~-l~~~~~~~----------------~~ 282 (514)
-+|+||||||+.+-.+. .+ ...+ +...| -.+.|+||=..+.+. +...+.+. +|
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG 648 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFG 648 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhC
Confidence 99999999999887765 22 2222 12223 468888887776654 33322221 22
Q ss_pred CCCcCCH-HH-------------HHHHHHHHHHHHHHhcCCceEEEEEecc---------------------------cC
Q 010228 283 KDISKDK-RA-------------IGKLRREAERAKRALSSQHQVRVEIESL---------------------------FD 321 (514)
Q Consensus 283 ~~~~~~~-~~-------------~~~L~~~~e~~K~~Ls~~~~~~i~i~~~---------------------------~~ 321 (514)
.+-.... +. ...++.++|+.-.. .........+..+ ++
T Consensus 649 ~dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fd 727 (1002)
T PF07520_consen 649 GDGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFD 727 (1002)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcc
Confidence 2200000 00 01223333331110 0000011111110 11
Q ss_pred CceeEEeeeHHHHHHHHH---HHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCC-------
Q 010228 322 GIDFSEPLTRARFEELNN---DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP------- 391 (514)
Q Consensus 322 ~~~~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v------- 391 (514)
=.++.+.|+..++...+. -.+...+..+-+++...+ -|.++|+|--|++|.|+..+++..| .++
T Consensus 728 ildv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~ 801 (1002)
T PF07520_consen 728 ILDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLH 801 (1002)
T ss_pred eecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecC
Confidence 134567888888888774 556666666777776644 3579999999999999999999884 221
Q ss_pred -------------CCCCChhhHHHhHHHHHHHH
Q 010228 392 -------------NKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 392 -------------~~~~~p~~aVa~GAa~~a~~ 411 (514)
..-.||.+.||.||.+....
T Consensus 802 ~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La 834 (1002)
T PF07520_consen 802 GYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLA 834 (1002)
T ss_pred CeeecccccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 23459999999999887643
No 58
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.67 E-value=7.1e-07 Score=81.66 Aligned_cols=237 Identities=19% Similarity=0.195 Sum_probs=142.9
Q ss_pred HHHHHHHHH-hhh--CCCCCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEc
Q 010228 157 LTKMKETAE-AFL--GKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDL 232 (514)
Q Consensus 157 L~~l~~~a~-~~~--~~~~~~vviTVPa~~~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~ 232 (514)
+.++|+++- +.+ .....++.+|-|..-....|+.|-+ ..+..||..+.+--...-+.++-++.. =+|+|-
T Consensus 83 M~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t------GvVvDS 156 (389)
T KOG0677|consen 83 MEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT------GVVVDS 156 (389)
T ss_pred HHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc------eEEEec
Confidence 345665542 122 2334478999999888888988876 577889998887666555555444433 379999
Q ss_pred CCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc--
Q 010228 233 GGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-- 310 (514)
Q Consensus 233 GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-- 310 (514)
|-|-|.++-+.-. +..-.-.+...+.|+++++-|.+.+..+ -|...-+.+. +..+..|+.|....
T Consensus 157 GDGVTHi~PVye~---~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd 223 (389)
T KOG0677|consen 157 GDGVTHIVPVYEG---FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYD 223 (389)
T ss_pred CCCeeEEeeeecc---eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeec
Confidence 9999998866522 1111123346789999999999887532 2333332222 34455555553211
Q ss_pred ---------eEEEEEec--ccCCceeEEeeeHHHH---HHHHHHHH-----hhhhcHHHHHHHHcCCC--ccCCCeEEEE
Q 010228 311 ---------QVRVEIES--LFDGIDFSEPLTRARF---EELNNDLF-----RKTMGPVKKAMEDAGLE--KNQIDEIVLV 369 (514)
Q Consensus 311 ---------~~~i~i~~--~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLv 369 (514)
++++-+++ +.+|. .+++-.+.| |.+|+|.+ ..+.+++-.+++.+.++ ..-.++|+|.
T Consensus 224 ~e~e~kLalETTvLv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLS 301 (389)
T KOG0677|consen 224 LELEQKLALETTVLVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLS 301 (389)
T ss_pred hhhhhHhhhhheeeeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeec
Confidence 12222222 22332 344555555 45666644 34566677777776554 2334789999
Q ss_pred cCCcCcHHHHHHHHhHcCC------------------CCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 370 GGSTRIPKVQQLLKDYFDG------------------KEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 370 GG~s~~p~l~~~l~~~f~~------------------~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
||++--|++-.+|++.++. .++..++.-...|-.|.|..|..+..
T Consensus 302 GGstMYPGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 302 GGSTMYPGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred CCcccCCCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 9999999998887765521 12233333446777777777766544
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.67 E-value=7e-07 Score=86.72 Aligned_cols=181 Identities=22% Similarity=0.235 Sum_probs=104.4
Q ss_pred eEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcC
Q 010228 203 ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 282 (514)
Q Consensus 203 ~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 282 (514)
-..++|-.|-+.+........+ .|+|+||--.-+..++ ++.+.-.....-..-|.-.|=+.++ +.++
T Consensus 210 D~~~~Ei~ah~kgA~~f~p~~d---tIiDIGGQD~K~i~i~--dG~v~df~mN~~CAAGtGrFLE~~A--------~~Lg 276 (396)
T COG1924 210 DKVVVEISAHAKGARYFAPDVD---TVIDIGGQDSKVIKLE--DGKVDDFTMNDKCAAGTGRFLEVIA--------RRLG 276 (396)
T ss_pred CcceeeeehhHHHHHHhCCCCc---EEEEecCcceeEEEEe--CCeeeeeEeccccccccchHHHHHH--------HHhC
Confidence 3456666666655433332211 7999999866655555 6655444333333333222222222 2334
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHH-HHHHcCCCcc
Q 010228 283 KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK-AMEDAGLEKN 361 (514)
Q Consensus 283 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~-~l~~~~~~~~ 361 (514)
.++. .+-+.+++.+....-+..+.+..++-. .+..=.-...|+++..+...+.+.+.. ++++....+
T Consensus 277 v~v~-------E~~~~A~~~~~~v~i~S~CaVF~eSev----i~~~~~G~~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~- 344 (396)
T COG1924 277 VDVE-------ELGKLALKATPPVKINSRCAVFAESEV----ISALAEGASPEDILAGLAYSVAENVAEKVIKRVDIEE- 344 (396)
T ss_pred CCHH-------HHHHHHhcCCCCcccCCeeEEEehHHH----HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCC-
Confidence 4332 122333333332222233333322100 000001123477777777777776666 565543322
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
.|+|+||.+....+.+++++.+ +.++..+.+|+..-|.|||+++...
T Consensus 345 ---~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 345 ---PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred ---CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 2999999999999999999999 7899999999999999999998643
No 60
>PRK13317 pantothenate kinase; Provisional
Probab=98.42 E-value=4.8e-05 Score=73.56 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=42.5
Q ss_pred CCCeEEEEc-CCcCcHHHHHHHHhHcC--CCCCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVG-GSTRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvG-G~s~~p~l~~~l~~~f~--~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|+.+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 79999999999999874 46778889999999999999874
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.12 E-value=4.2e-05 Score=71.38 Aligned_cols=192 Identities=21% Similarity=0.218 Sum_probs=102.0
Q ss_pred HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHH
Q 010228 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (514)
Q Consensus 194 a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (514)
..+..|.++..-=-|+++|.+....++. .+..+.|+|+|||+||.+++.-++. +.-+...| .|+.++..+...
T Consensus 104 l~~~lgv~V~igGvEAemAi~GALTTPG-t~~PlaIlDmG~GSTDAsii~~~g~-v~~iHlAG----AG~mVTmlI~sE- 176 (332)
T PF08841_consen 104 LEEELGVPVEIGGVEAEMAILGALTTPG-TDKPLAILDMGGGSTDASIINRDGE-VTAIHLAG----AGNMVTMLINSE- 176 (332)
T ss_dssp HHHHHTSEEEEECEHHHHHHHHHTTSTT---SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHHH-
T ss_pred HHHHHCCceEEccccHHHHHhcccCCCC-CCCCeEEEecCCCcccHHHhCCCCc-EEEEEecC----CchhhHHHHHHh-
Confidence 4456788887778899999998855443 4566899999999999999985544 33333232 466666655433
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC-----------ceEEEEEecc----c-------CCc--eeEEee
Q 010228 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----------HQVRVEIESL----F-------DGI--DFSEPL 329 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~~~----~-------~~~--~~~~~i 329 (514)
.+.+- +.-+|..|+---.. .+..+.-+.+ + ++. .+...+
T Consensus 177 -------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 177 -------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp -------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred -------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 33221 15567777642111 0111110000 0 010 111122
Q ss_pred eHHHHHHHHHHHHhhh-hcHHHHHHHHc--CCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCC-------CCCCCCChhh
Q 010228 330 TRARFEELNNDLFRKT-MGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-------EPNKGVNPDE 399 (514)
Q Consensus 330 tr~~~e~~~~~~~~~i-~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~-------~v~~~~~p~~ 399 (514)
+-+++..+=+..-+++ ..-..++|++. .-+..+|+.|+|+||++.=.-+-+++.+.+..- ++.-..-|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3333333222222211 11122333332 122457899999999998888888888887533 3445567999
Q ss_pred HHHhHHHHHH
Q 010228 400 AVAYGAAVQG 409 (514)
Q Consensus 400 aVa~GAa~~a 409 (514)
|||.|.++..
T Consensus 320 AVATGLvlsy 329 (332)
T PF08841_consen 320 AVATGLVLSY 329 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.91 E-value=0.0047 Score=64.27 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=52.4
Q ss_pred eEEeeeHHHHHHHHHHH---HhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCC----------
Q 010228 325 FSEPLTRARFEELNNDL---FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP---------- 391 (514)
Q Consensus 325 ~~~~itr~~~e~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v---------- 391 (514)
+.+.|.-.++++.+-.. +......+.+++.- -+-+.++|+|--|++|+++..++...| .++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 34456666665544332 23333333444433 234579999999999999999998774 221
Q ss_pred ----------CCCCChhhHHHhHHHHHHHH
Q 010228 392 ----------NKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 392 ----------~~~~~p~~aVa~GAa~~a~~ 411 (514)
..-.||...+|.||.+.+..
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Ls 846 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALS 846 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHH
Confidence 23348999999999887754
No 63
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=97.79 E-value=0.00035 Score=66.46 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=111.9
Q ss_pred CCcEEEEcCCCCCHH-HHHHHHHHHHHcCCceeEeechhhHHHHhhh---hccCC----CceeEEEEEcCCCeeEEEEEE
Q 010228 172 IKDAVVTVPAYFNDA-QRQATKDAGIIAGLNVARIINEPTAAAIAYG---LDKKG----GEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 172 ~~~vviTVPa~~~~~-qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~---~~~~~----~~~~vlVvD~GggT~dvsv~~ 243 (514)
..++++|-|..--+. |.....-..+..+|+.+. .-+.|+..++. ....+ .....+|+|-|-+-|.+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~--kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVL--KTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEe--ecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 457899999654443 444444466777776543 33333333332 11111 355899999999988877554
Q ss_pred EeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHH----H-----hcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc-eEE
Q 010228 244 IDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIK----K-----KHGKDISKDKRAIGKLRREAERAKRALSSQH-QVR 313 (514)
Q Consensus 244 ~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~----~-----~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-~~~ 313 (514)
...... -+.. ....||..++..|.+.+.=+-- + +.+.++.-- -+.+.+..+.+|...-.+. ...
T Consensus 171 ~g~~~~--qaV~-RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfV---SqnF~~~m~~~~~k~~~~~~~i~ 244 (400)
T KOG0680|consen 171 KGIPYY--QAVK-RIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFV---SQNFKEDMDIAKTKFQENKVMID 244 (400)
T ss_pred cCcchh--hceE-EeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEe---chhhHHHHHHHhhccccceeEEE
Confidence 322211 1112 2679999999998887641100 0 000111000 0112233333333321111 011
Q ss_pred EEEecccC--------------CceeEEeeeHHHH---HHHHHHHHh-----hhhcHHHHHHHHc--CCCccCCCeEEEE
Q 010228 314 VEIESLFD--------------GIDFSEPLTRARF---EELNNDLFR-----KTMGPVKKAMEDA--GLEKNQIDEIVLV 369 (514)
Q Consensus 314 i~i~~~~~--------------~~~~~~~itr~~~---e~~~~~~~~-----~i~~~i~~~l~~~--~~~~~~i~~ViLv 369 (514)
.-++++.. .....++++-+.| |-++.|--- .|.+.|.+.|... .+.+.-+..|+++
T Consensus 245 YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~i 324 (400)
T KOG0680|consen 245 YVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCI 324 (400)
T ss_pred EecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEe
Confidence 11111110 1112344555555 444444322 2233344444432 1223345689999
Q ss_pred cCCcCcHHHHHHHHhHcC-------CCCCCCCCChhhHHHhHH
Q 010228 370 GGSTRIPKVQQLLKDYFD-------GKEPNKGVNPDEAVAYGA 405 (514)
Q Consensus 370 GG~s~~p~l~~~l~~~f~-------~~~v~~~~~p~~aVa~GA 405 (514)
||.++.|+++++|...+. +..+..+.||..-.-.|+
T Consensus 325 GGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g 367 (400)
T KOG0680|consen 325 GGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGG 367 (400)
T ss_pred cCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhc
Confidence 999999999999988762 223445556654433343
No 64
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.78 E-value=0.00027 Score=71.09 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=86.1
Q ss_pred eeeCHHHHHHHHHHHHHHHHHhhhCCCC-----CcEEEEcCCCCCHHHHH-HHHHHHHHcCCceeEeechhhHHHHhhhh
Q 010228 145 KVFSPEEISAMILTKMKETAEAFLGKKI-----KDAVVTVPAYFNDAQRQ-ATKDAGIIAGLNVARIINEPTAAAIAYGL 218 (514)
Q Consensus 145 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~-----~~vviTVPa~~~~~qr~-~l~~a~~~aGl~~~~li~Ep~Aaal~~~~ 218 (514)
...+..++.+++-+-+.....+.+..+. ..+|+.||-.|...+.+ .++-.....||....++.|+.||.+..++
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3456777776654433333344444332 36899999999976655 45557788999999999999999998877
Q ss_pred ccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 219 DKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 219 ~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
. ...|||+|+-+|.++.++. |.. ...+.-....||+||++.|+-++.
T Consensus 275 s------s~CVVdiGAQkTsIaCVEd--Gvs-~~ntri~L~YGGdDitr~f~~ll~ 321 (618)
T KOG0797|consen 275 S------SACVVDIGAQKTSIACVED--GVS-LPNTRIILPYGGDDITRCFLWLLR 321 (618)
T ss_pred c------ceeEEEccCcceeEEEeec--Ccc-ccCceEEeccCCchHHHHHHHHHH
Confidence 5 3489999999999998873 321 111222357899999999986654
No 65
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.56 E-value=0.0074 Score=58.12 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=39.0
Q ss_pred cCCCeEEEEcC-CcCcHHHHHHHHhHcC--CCCCCCCCChhhHHHhHHHH
Q 010228 361 NQIDEIVLVGG-STRIPKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 361 ~~i~~ViLvGG-~s~~p~l~~~l~~~f~--~~~v~~~~~p~~aVa~GAa~ 407 (514)
..++.|+++|| ....|.+++.+.+.+. +.++..+.++...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45778999999 6789999999988663 35667788999999999986
No 66
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.54 E-value=0.026 Score=54.79 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHH----HhHcCCCCCCCCCChhhHHHhHHHHHH
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL----KDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l----~~~f~~~~v~~~~~p~~aVa~GAa~~a 409 (514)
.++++...+.+.+.+...+.+...... .|+|+||..+.+.+++.+ ++..+..++..+..|....|.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 445555666666667777766543321 299999999997777766 344444455677789999999999876
No 67
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.43 E-value=0.00095 Score=67.86 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=48.2
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCceeE---eechhhHHHHhhhhcc--CCCceeEEEEEcCCCeeEEEEEEEe
Q 010228 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVAR---IINEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTID 245 (514)
Q Consensus 174 ~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~---li~Ep~Aaal~~~~~~--~~~~~~vlVvD~GggT~dvsv~~~~ 245 (514)
-+.||==+.-.+++++.+...+..||==++. -=.|+.-|+...+... .+....++=+|+||||+.+++++..
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G 163 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNG 163 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECC
Confidence 3567777777788888888888888732221 1345555554332221 1256788999999999999999843
No 68
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.84 E-value=0.0012 Score=60.78 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHcCCC-ccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 334 FEELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
..++++-+++.+.-.++..++...-. ...++.|+++||.++++.+.+++.+.+ +.++..... .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 45555666666665555555543111 234889999999999999999999999 677766544 88999999998863
No 69
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=96.78 E-value=0.0038 Score=56.99 Aligned_cols=30 Identities=37% Similarity=0.324 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHh
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIA 215 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~ 215 (514)
...+.+.++++.+|++...++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457788889999999999999999998754
No 70
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.46 E-value=0.073 Score=55.00 Aligned_cols=81 Identities=27% Similarity=0.376 Sum_probs=58.6
Q ss_pred eHHHHHHHHHHHHhhhh---cHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHH
Q 010228 330 TRARFEELNNDLFRKTM---GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (514)
Q Consensus 330 tr~~~e~~~~~~~~~i~---~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa 406 (514)
+.+.+-.+....++-+. +.|-+++++.+ -.|+.|+.+||-.+.|.+.+...... +.++..+ ..+++++.|+|
T Consensus 399 ~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsA 473 (544)
T COG1069 399 SPESLALLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAA 473 (544)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHH
Confidence 44444455555555443 34445555544 45899999999999999999999999 6666655 66789999999
Q ss_pred HHHHHhcCC
Q 010228 407 VQGGILSGE 415 (514)
Q Consensus 407 ~~a~~~~~~ 415 (514)
+.++.-.+.
T Consensus 474 m~~avAag~ 482 (544)
T COG1069 474 MFAAVAAGV 482 (544)
T ss_pred HHHHHHhcc
Confidence 999865543
No 71
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.44 E-value=0.072 Score=56.38 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhh-hhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchH
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~-~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~ 263 (514)
+..+.+.++-+..|+++ .+++..+=|.+.| +..... ..+..+|+|+|||+|.+++++-.... ...+.++|..
T Consensus 92 N~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~v 165 (496)
T PRK11031 92 NADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT-----SLFSLSMGCV 165 (496)
T ss_pred CHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee-----eeeEEeccch
Confidence 45666777777889985 6666665555554 332221 23458999999999999998733211 1223678887
Q ss_pred HHHHHHH
Q 010228 264 DFDQRVM 270 (514)
Q Consensus 264 ~id~~l~ 270 (514)
.+.+.+.
T Consensus 166 rl~e~f~ 172 (496)
T PRK11031 166 TWLERYF 172 (496)
T ss_pred HHHHHhc
Confidence 7665543
No 72
>PRK10854 exopolyphosphatase; Provisional
Probab=96.28 E-value=0.11 Score=55.33 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhh-hhccCC-CceeEEEE
Q 010228 153 SAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVF 230 (514)
Q Consensus 153 ~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~-~~~~~~-~~~~vlVv 230 (514)
.-..|+..++.++.+ +.....+|-|--.-=-.+..+.+.++-+..|++. .+++..+=|.+.| +..... ..+..+|+
T Consensus 65 ~~~~L~~F~~~~~~~-~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvv 142 (513)
T PRK10854 65 GLNCLSLFAERLQGF-SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVI 142 (513)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEE
Confidence 344555566655543 2221222222222112344556667777789885 6666666665555 332221 23468999
Q ss_pred EcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 010228 231 DLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 231 D~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (514)
|+|||+|.+++++-.... ... ..++|...+.+.+
T Consensus 143 DIGGGStEl~~~~~~~~~--~~~---S~~lG~vrl~e~f 176 (513)
T PRK10854 143 DIGGGSTELVIGENFEPI--LVE---SRRMGCVSFAQLY 176 (513)
T ss_pred EeCCCeEEEEEecCCCee--EeE---EEecceeeHHhhh
Confidence 999999999998743211 111 1367776665544
No 73
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=96.24 E-value=0.046 Score=56.01 Aligned_cols=124 Identities=11% Similarity=-0.047 Sum_probs=75.0
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCce
Q 010228 147 FSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEK 225 (514)
Q Consensus 147 ~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~ 225 (514)
++--++...+|.++..+..-.-..-...+++|-+..-....|+.|.+ ..+..|++.+.+=-...=+.+. ......+.
T Consensus 91 vtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--N~~~~~~~ 168 (645)
T KOG0681|consen 91 VTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--NYGKSSNK 168 (645)
T ss_pred cccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh--ccCcccCc
Confidence 34445666666666654321111123468899998777788888877 5667799887663332222211 11111334
Q ss_pred eEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 226 NILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 226 ~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
..||+++|-.+|.|-.+-.+... +....-.++||.....-|.+++..
T Consensus 169 ~~liis~g~~~T~vipvldG~~i---l~~~kRiN~GG~qa~dYL~~Lmq~ 215 (645)
T KOG0681|consen 169 SGLIISMGHSATHVIPVLDGRLI---LKDVKRINWGGYQAGDYLSRLMQL 215 (645)
T ss_pred ceEEEecCCCcceeEEEecCchh---hhcceeeccCcchHHHHHHHHHhc
Confidence 68999999999998877643322 222333678888887777776653
No 74
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.22 E-value=0.013 Score=62.83 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=63.3
Q ss_pred eeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHH
Q 010228 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 329 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 408 (514)
-+|.++..+++.+++.+.-.++..++...-....++.|.++||.++++.+.+.+...+ +.++....+ .++.++|||+.
T Consensus 410 ~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~l 487 (541)
T TIGR01315 410 RSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAML 487 (541)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHHH
Confidence 3566677777888877776666655543212235788999999999999999999999 788877655 45789999999
Q ss_pred HHHhcC
Q 010228 409 GGILSG 414 (514)
Q Consensus 409 a~~~~~ 414 (514)
|+.-.+
T Consensus 488 A~~~~G 493 (541)
T TIGR01315 488 GAKAAG 493 (541)
T ss_pred HHHhcC
Confidence 976544
No 75
>PRK15027 xylulokinase; Provisional
Probab=96.19 E-value=0.01 Score=62.73 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
.++++.+++.+.-.++..++........++.|+++||+++++.+.+++.+.+ +.++....+..++.++|||+.|+.-.+
T Consensus 359 ~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 3344444555544444433332111234788999999999999999999999 788866556677889999999986554
Q ss_pred C
Q 010228 415 E 415 (514)
Q Consensus 415 ~ 415 (514)
.
T Consensus 438 ~ 438 (484)
T PRK15027 438 P 438 (484)
T ss_pred C
Confidence 3
No 76
>PLN02669 xylulokinase
Probab=96.06 E-value=0.018 Score=61.78 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=53.7
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555544332 35789999999999999999999999 6777766555 6889999999975
No 77
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.16 Score=53.10 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCC-ceeEEEEEcCCCeeEEEEEEE
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGG-EKNILVFDLGGGTFDVSILTI 244 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~-~~~vlVvD~GggT~dvsv~~~ 244 (514)
+.-+++..+-+..|++.-.+=-|-+|-..+.+...... ....+|+|+|||+|.+++...
T Consensus 89 N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 89 NGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 44667788888889986555445555444444433333 778899999999999999873
No 78
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.76 E-value=0.14 Score=50.42 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhh-hccCCCceeEEEEEc
Q 010228 154 AMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYG-LDKKGGEKNILVFDL 232 (514)
Q Consensus 154 ~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~-~~~~~~~~~vlVvD~ 232 (514)
...|+..++.++.+ +.....++-|--.---.+..+.+.+.-+..|++. ++++..+=|.+.|. ..........+++|+
T Consensus 55 ~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~Di 132 (300)
T TIGR03706 55 LEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDI 132 (300)
T ss_pred HHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 34555555555443 2221223333322222344455555666789875 67777777766652 222212233599999
Q ss_pred CCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 010228 233 GGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 233 GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (514)
|||+|.++.+.-.... .....++|...+.+.+
T Consensus 133 GGGSte~~~~~~~~~~-----~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 133 GGGSTELILGKDFEPG-----EGVSLPLGCVRLTEQF 164 (300)
T ss_pred cCCeEEEEEecCCCEe-----EEEEEccceEEhHHhh
Confidence 9999999987632211 1223567777666554
No 79
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.75 E-value=0.021 Score=47.90 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=26.6
Q ss_pred EEEEEcCCCeeEEEEEEEe-CCEEEEEEecCCCC--CchHHHH--HHHHHHH
Q 010228 227 ILVFDLGGGTFDVSILTID-NGVFEVLSTNGDTH--LGGEDFD--QRVMEYF 273 (514)
Q Consensus 227 vlVvD~GggT~dvsv~~~~-~~~~~v~~~~~~~~--~GG~~id--~~l~~~l 273 (514)
++++|+|++++++.+++.. .+.++++.....+. +=+..|. +.+.+-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 5789999999999999963 33444432221111 1167776 6665553
No 80
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=95.71 E-value=0.091 Score=50.67 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCceeE---eechhhHHHHhhhhcc--CCCceeEEEEEcCCCeeEEEEEEEe
Q 010228 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNVAR---IINEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTID 245 (514)
Q Consensus 174 ~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~---li~Ep~Aaal~~~~~~--~~~~~~vlVvD~GggT~dvsv~~~~ 245 (514)
-+.||=-..-..+.|..+......||==++. --.|+.-|.-..+... .++...++=+|+||||+..+++...
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~G 165 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAG 165 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeeccc
Confidence 3566666666666777776666666522211 1234444443332211 1245678889999999999998753
No 81
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.53 E-value=0.033 Score=58.87 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
+.+++.+++.+.-.++..++... .....++.|.++||.++++.+.+++.+.+ +.++.... ..++.++|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhc
Confidence 44445555555444444443321 11234788999999999999999999999 77776654 56688999999998665
Q ss_pred CC
Q 010228 414 GE 415 (514)
Q Consensus 414 ~~ 415 (514)
+.
T Consensus 440 g~ 441 (481)
T TIGR01312 440 GE 441 (481)
T ss_pred CC
Confidence 53
No 82
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.50 E-value=0.034 Score=59.14 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCC-CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.++++.+++.+.-.++..++...- ....++.|.++||.++++.+.+.+.+.| +.++.... ..++.++|||+.++.-.
T Consensus 378 ~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 378 AHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAV 455 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhc
Confidence 344455555555444444443211 1123788999999999999999999999 77877655 45578999999998655
Q ss_pred CC
Q 010228 414 GE 415 (514)
Q Consensus 414 ~~ 415 (514)
+.
T Consensus 456 G~ 457 (504)
T PTZ00294 456 GV 457 (504)
T ss_pred Cc
Confidence 53
No 83
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.49 E-value=0.035 Score=59.02 Aligned_cols=78 Identities=19% Similarity=0.252 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.++++.+++.+.-.++..++... .....++.|.++||.++++.+.+.+.+.+ +.+|.... ..++.++|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhc
Confidence 44455555555555554444322 11224788999999999999999999999 78886554 45688999999997654
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 453 G 453 (498)
T PRK00047 453 G 453 (498)
T ss_pred C
Confidence 4
No 84
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.44 E-value=0.031 Score=59.31 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.++++.+++.+.-.++..++... .....++.|.++||.++++.+.+++.+.| +.++.... ..++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~-~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPK-VTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEecC-CCcchHHHHHHHHHhhc
Confidence 44445555555555544444321 11234789999999999999999999999 77876644 45688999999997655
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 449 G 449 (493)
T TIGR01311 449 G 449 (493)
T ss_pred C
Confidence 4
No 85
>PRK04123 ribulokinase; Provisional
Probab=95.39 E-value=0.033 Score=59.91 Aligned_cols=77 Identities=21% Similarity=0.305 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCC-cCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
++++.+++.+.-.+...++........++.|.++||. ++++.+.+.+.+.| +.+|... .+.++.++|||+.|+.-.+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 4455555555544444433321112347889999999 99999999999999 6777555 3567889999999976544
No 86
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.33 E-value=0.037 Score=58.23 Aligned_cols=76 Identities=20% Similarity=0.259 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhcHHHHH---HHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 335 EELNNDLFRKTMGPVKKA---MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~---l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
.++++.+++.+.-.++.. +++.+ ...++.|.++||+++++.+.+.+...+ +.+|....++ ++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHH
Confidence 344555555554444443 34332 124788999999999999999999999 7888666554 6789999999986
Q ss_pred hcC
Q 010228 412 LSG 414 (514)
Q Consensus 412 ~~~ 414 (514)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 554
No 87
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.32 E-value=0.04 Score=59.12 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCC-cCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
++++.+++.+.-.++..++........++.|+++||. ++++.+.+.+.+.| +.+|....+ .++.|+|||+.|+.-.+
T Consensus 409 ~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 409 LLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 3444455555444444333321122357899999999 99999999999999 788866655 46889999999986554
No 88
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=95.25 E-value=0.013 Score=59.86 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=51.6
Q ss_pred hhhcHHHHHHHHcCCCcc--CCCeEEEEcCCcCcHHHHHHHHhHcC-------CCCCCCCCChhhHHHhHHHHHHHH
Q 010228 344 KTMGPVKKAMEDAGLEKN--QIDEIVLVGGSTRIPKVQQLLKDYFD-------GKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 344 ~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~l~~~l~~~f~-------~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
.+.+++...|++...... .+++|+|+||+|.+|++.+.|+..+- ...|....||-..+-+||+.+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 345556666666432222 38899999999999999999998773 234567789999999999999875
No 89
>PRK10331 L-fuculokinase; Provisional
Probab=95.24 E-value=0.04 Score=58.05 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.++++.+++.+.-.++..++... .....++.|.++||.++++.+.+.+.+.+ +.++.... ..++.++|||+.|+.-.
T Consensus 361 ~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 361 GHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGV 438 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhc
Confidence 33445555555544444444321 11235789999999999999999999999 77776554 44688999999997654
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 439 G 439 (470)
T PRK10331 439 G 439 (470)
T ss_pred C
Confidence 4
No 90
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.24 E-value=0.064 Score=55.68 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCc-cCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEK-NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
+.+....++.+.--+++.|+...... ..++.+.+.||.|+.|.+.+.+...+ +.++..+.+++. ++.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 33333444444444444444332222 46888999999999999999999999 688888888877 9999999998766
Q ss_pred CC
Q 010228 414 GE 415 (514)
Q Consensus 414 ~~ 415 (514)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 54
No 91
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.12 E-value=2.7 Score=41.62 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=29.2
Q ss_pred HcCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCCeeEEEEE
Q 010228 197 IAGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 197 ~aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~GggT~dvsv~ 242 (514)
..|++ +.+.++..|+|++-.... ....++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 44765 678999999988754322 2235678888888775 44444
No 92
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.07 E-value=0.049 Score=57.97 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
+++++.+++.+.-.+...++... .....++.|.++||.++++.+.+++.+.+ +.++....++ ++.++|||+.|+.-.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKAL 450 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhc
Confidence 44555555555544443332210 01225789999999999999999999999 7787665544 688999999997655
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 451 G 451 (505)
T TIGR01314 451 G 451 (505)
T ss_pred C
Confidence 4
No 93
>PLN02295 glycerol kinase
Probab=94.91 E-value=0.064 Score=57.19 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhcHHHHHHHHc----CC--CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHH
Q 010228 335 EELNNDLFRKTMGPVKKAMEDA----GL--EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~----~~--~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 408 (514)
.++++.+++.+.-.++..++.. +. ....++.|.++||+++++.+.+.+.+.+ +.++.... ..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHH
Confidence 4445555555555554444432 11 1235788999999999999999999999 78876554 457889999999
Q ss_pred HHHhcC
Q 010228 409 GGILSG 414 (514)
Q Consensus 409 a~~~~~ 414 (514)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 876544
No 94
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.88 E-value=0.067 Score=56.12 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=51.9
Q ss_pred HHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
+++.+++.+.-.++..++... .....++.|.++||+++++.+.+.+.+.+ +.+|... +.++.|+|||+.++.-.+.
T Consensus 361 l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 361 LARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 344444444444333333221 11124788999999999999999999999 7888543 3678999999999765543
No 95
>PF13941 MutL: MutL protein
Probab=94.82 E-value=0.11 Score=53.52 Aligned_cols=33 Identities=33% Similarity=0.692 Sum_probs=26.7
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEEEcCCCCcccceEE
Q 010228 38 VIGIDLGTTYSCVGVYK--NGHVEIIANDQGNRITPSWV 74 (514)
Q Consensus 38 vvGID~GTt~s~va~~~--~g~~~~i~~~~g~~~~Ps~v 74 (514)
++.+|||+|+|++...+ .+..+++ |....||.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc
Confidence 68899999999999998 7777777 344568766
No 96
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.66 E-value=0.067 Score=57.16 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
..+++.+++.+.-.+...++... .....++.|.++||.++++.+.+.+.+.+ +.++....++ ++.++|||+.|+.-.
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~ 458 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGA 458 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHh
Confidence 33444455555444333333211 11234789999999999999999999999 7888766544 578999999997655
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 459 G 459 (520)
T PRK10939 459 G 459 (520)
T ss_pred C
Confidence 4
No 97
>PRK13321 pantothenate kinase; Reviewed
Probab=94.39 E-value=2.4 Score=40.65 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010228 38 VIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~ 57 (514)
+++||+|.|+++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 58999999999999998663
No 98
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.39 E-value=0.095 Score=55.22 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
+++-+++.+.-.++..++... .....++.|.++||+++++.+.+.+.+.+ +.+|.... .++.++|||+.++.-.+.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 344445554444444333221 11124788999999999999999999999 78875543 378899999999765553
No 99
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.28 E-value=0.13 Score=51.93 Aligned_cols=55 Identities=24% Similarity=0.396 Sum_probs=46.5
Q ss_pred HcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 355 ~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
..+....+.+.|+.+||.|+...|-+.|.+.| +.+|... +..++.|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 34566667889999999999999999999999 7777665 6778999999998753
No 100
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=93.97 E-value=0.03 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEECCeEE
Q 010228 38 VIGIDLGTTYSCVGVYKNGHVE 59 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~~ 59 (514)
+++||+|++.+++++++.+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~ 22 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDG 22 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEE
T ss_pred CEEEEcCCCcEEEEEEEeCCCC
Confidence 5899999999999999887543
No 101
>PRK13318 pantothenate kinase; Reviewed
Probab=93.67 E-value=2.4 Score=40.74 Aligned_cols=20 Identities=35% Similarity=0.840 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010228 38 VIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~ 57 (514)
+++||+|.|+++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998654
No 102
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.46 E-value=0.42 Score=46.69 Aligned_cols=108 Identities=20% Similarity=0.337 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhCCCCCcEE--EEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhh-hhccC-CCceeEE
Q 010228 153 SAMILTKMKETAEAFLGKKIKDAV--VTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKK-GGEKNIL 228 (514)
Q Consensus 153 ~~~~L~~l~~~a~~~~~~~~~~vv--iTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~-~~~~~-~~~~~vl 228 (514)
+...|+..++.++.+ .+.++. -|--.-=-.+..+.+.+.-+..|++. .+++..+=|.+.| +.... ...+..+
T Consensus 40 ~~~~L~~f~~~~~~~---~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~l 115 (285)
T PF02541_consen 40 AIDALKRFKEILKDY---GVEKIRAVATSALREAKNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGL 115 (285)
T ss_dssp HHHHHHHHHHHHHHT---TGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEE
T ss_pred HHHHHHHHHHHHHHC---CCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEE
Confidence 444555555555543 233332 22111111233445566667789885 5566555555544 22222 2466789
Q ss_pred EEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 010228 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (514)
++|+|||+|.++.++ ++.+.. ....++|...+.+.+
T Consensus 116 viDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 116 VIDIGGGSTELILFE--NGKVVF---SQSLPLGAVRLTERF 151 (285)
T ss_dssp EEEEESSEEEEEEEE--TTEEEE---EEEES--HHHHHHHH
T ss_pred EEEECCCceEEEEEE--CCeeeE---eeeeehHHHHHHHHH
Confidence 999999999999887 333222 223689998877665
No 103
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.27 E-value=0.32 Score=51.75 Aligned_cols=50 Identities=28% Similarity=0.278 Sum_probs=36.9
Q ss_pred cCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
..++.|.++||+++++.+.+++.+.+ +.++..+... ++.+.|+|..++..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~-e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVE-EAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcc-cchHHHHHHHHHHH
Confidence 45678999999999999999999999 7787765444 44444444444433
No 104
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=93.06 E-value=2.5 Score=40.25 Aligned_cols=48 Identities=29% Similarity=0.285 Sum_probs=37.0
Q ss_pred ccCCCeEEEEcCCcCcHHHHHHHHhHcC---CCCCCCCCChhhHHHhHHHH
Q 010228 360 KNQIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 360 ~~~i~~ViLvGG~s~~p~l~~~l~~~f~---~~~v~~~~~p~~aVa~GAa~ 407 (514)
+..+|.|+|+||.++...+-++|.+... ..-+....+-.+|-|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4679999999999999999999988663 22334445667899999854
No 105
>PRK09604 UGMP family protein; Validated
Probab=92.93 E-value=10 Score=38.00 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCC---ChhhHHHhHHHHHHHHhc
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~a~~~~ 413 (514)
.++.|+|+||.+...++++.|.+.+. +.++..+. --|.+++.|++=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 46789999999999999999998873 22333332 236788888874443333
No 106
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=92.29 E-value=1.5 Score=44.17 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=40.9
Q ss_pred hhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC----CCChhhHHHhHHHHHHHH
Q 010228 344 KTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 344 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~----~~~p~~aVa~GAa~~a~~ 411 (514)
=+...|.+.++... ...+.|+++||+++.|.|.++|++.+| .++.. ..+++.-=|..-|+.|..
T Consensus 271 ~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 271 LTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33444555554422 234689999999999999999999996 44432 234554445555566644
No 107
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=92.00 E-value=13 Score=36.29 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCC------CCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~------~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+++.|+|.|+.+..+.+.+.+++.+... ++......+.+.+.||+..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 4678999888877776667777666321 122233446788999998763
No 108
>PRK03011 butyrate kinase; Provisional
Probab=91.24 E-value=4.9 Score=40.60 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC---CCCCCCCCChhhHHHhHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD---GKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~---~~~v~~~~~p~~aVa~GAa~~ 408 (514)
+++.|+++||.+..+.+++.|++.+. ...+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999999999988774 233445556678999998743
No 109
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=90.71 E-value=3.8 Score=38.50 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhCCCCCcEEEEcCCCCCH-HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCC
Q 010228 157 LTKMKETAEAFLGKKIKDAVVTVPAYFND-AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGG 235 (514)
Q Consensus 157 L~~l~~~a~~~~~~~~~~vviTVPa~~~~-~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~Ggg 235 (514)
.++|.+..++.++.++ .++++-..|.. +.....++.+.. +. .|..-+. .....+.++.+|+|..
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAAa-NW----------~Ata~~~--~e~~~dsci~VD~GST 140 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAAA-NW----------VATARFL--AEEIKDSCILVDMGST 140 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHHh-hh----------HHHHHHH--HHhcCCceEEEecCCc
Confidence 4556666666666544 78888888875 333323332211 10 0100010 1114567899999999
Q ss_pred eeEEEEEEE
Q 010228 236 TFDVSILTI 244 (514)
Q Consensus 236 T~dvsv~~~ 244 (514)
|+|+.-+..
T Consensus 141 TtDIIPi~~ 149 (330)
T COG1548 141 TTDIIPIKD 149 (330)
T ss_pred ccceEeecc
Confidence 999988764
No 110
>PRK09557 fructokinase; Reviewed
Probab=90.50 E-value=19 Score=35.37 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC--------CCCCCCCChhhHHHhHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~--------~~v~~~~~p~~aVa~GAa~~a 409 (514)
+++.|+|-||.++.+.+.+.+++.+.. .++....-...+.++||+...
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 467888888888777666666554421 112223334568899998753
No 111
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=89.35 E-value=21 Score=34.91 Aligned_cols=97 Identities=18% Similarity=0.203 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEe---echhhHHHHhhhhccC-CCceeEEEEEcCCCeeEEEEEEEeCCE
Q 010228 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARI---INEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGV 248 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~l---i~Ep~Aaal~~~~~~~-~~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (514)
+...+|-|.--.++.|+.+.+..-. -|.+..+ |..-.|.+..|....- +..-+=+|+|-|-|-+.+-.+. .+
T Consensus 107 h~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipva--Eg- 182 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVA--EG- 182 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEee--cc-
Confidence 4467899988788888887765322 1222222 2222222333321111 1223346999999998887665 23
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHH
Q 010228 249 FEVLSTNGDTHLGGEDFDQRVMEYF 273 (514)
Q Consensus 249 ~~v~~~~~~~~~GG~~id~~l~~~l 273 (514)
+.+.+.-...++.|++++.-+...+
T Consensus 183 yVigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 183 YVIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred eEEeeeeccccccCCchhHHHHHHh
Confidence 3344445567899999988776665
No 112
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=88.96 E-value=7.7 Score=38.29 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHc
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYF 386 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f 386 (514)
.++.|+|+||.+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4678999999999999999998876
No 113
>PRK14878 UGMP family protein; Provisional
Probab=88.81 E-value=27 Score=34.78 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHc
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYF 386 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f 386 (514)
.++.|+|+||.+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3668999999999999999999876
No 114
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=88.41 E-value=1.1 Score=45.02 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC----CCChhhHHHhHHHHHHH
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~----~~~p~~aVa~GAa~~a~ 410 (514)
++++.-+.+=+.+.|.+.+++.. .+++.|+++||+++.|.|.+.|++.+++.+|.. ..+|+.-=|.+-|+.|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 44444444445555666666543 237799999999999999999999997654422 23344333444455554
Q ss_pred H
Q 010228 411 I 411 (514)
Q Consensus 411 ~ 411 (514)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 115
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=88.06 E-value=11 Score=38.00 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=52.9
Q ss_pred eeeHHHHHHHHHHHHhhhh-cHHHHHHHHcCCCccCCCe-EEEEcCCcCcHHHHHHHHhHcCCCCCCCCC-ChhhHHHhH
Q 010228 328 PLTRARFEELNNDLFRKTM-GPVKKAMEDAGLEKNQIDE-IVLVGGSTRIPKVQQLLKDYFDGKEPNKGV-NPDEAVAYG 404 (514)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~-~p~~aVa~G 404 (514)
.-.+.++-..++..+++++ ..++..+++.+ ++. |.|.||.+..-.....|.+..+-.++..++ --|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 3466677666666666554 44555666655 345 999999999999999998874323344333 447889999
Q ss_pred HHHHHHHhcC
Q 010228 405 AAVQGGILSG 414 (514)
Q Consensus 405 Aa~~a~~~~~ 414 (514)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999975443
No 116
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=87.60 E-value=0.44 Score=46.65 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=11.5
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHH
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 407 (514)
+++-..+++.+.|++.....+..+.+. .++.+||.+ |.+...+.+.++-..+..+..+.-+.|.||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 333444455555555544445544332 355566665 67888888888433455565678899999985
No 117
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=87.58 E-value=5.9 Score=39.25 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=45.8
Q ss_pred HHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCC---CCCCCCCh----hhHHHhHHHHHHHH
Q 010228 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK---EPNKGVNP----DEAVAYGAAVQGGI 411 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~---~v~~~~~p----~~aVa~GAa~~a~~ 411 (514)
+..++.+.+.|...+.. ..+++.|+|+|-.+++|-+.+.+++.|.+. ++.. ..+ ....|.|||+.|.-
T Consensus 241 ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~-l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 241 EAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRK-LEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceee-cccccccchhhhhhHHHHhhh
Confidence 34444455555544433 235778999999999999988888777321 2211 111 24589999999866
Q ss_pred hcCC
Q 010228 412 LSGE 415 (514)
Q Consensus 412 ~~~~ 415 (514)
+.+.
T Consensus 316 laGG 319 (343)
T PF07318_consen 316 LAGG 319 (343)
T ss_pred hhcc
Confidence 6543
No 118
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=87.37 E-value=12 Score=41.19 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.8
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 010228 35 LGTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~ 54 (514)
...++|||+|.|++++++.+
T Consensus 17 ~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 17 DGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCEEEEEcCchhheeeeec
Confidence 45799999999999999885
No 119
>PRK09698 D-allose kinase; Provisional
Probab=85.03 E-value=40 Score=32.96 Aligned_cols=37 Identities=11% Similarity=-0.026 Sum_probs=24.8
Q ss_pred cCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCC
Q 010228 198 AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGG 235 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~Ggg 235 (514)
.|++ +.+.++..|+|++-........++++.+.+|.|
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG 140 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG 140 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc
Confidence 4775 678999999887643322223457888888865
No 120
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=84.48 E-value=2.8 Score=43.05 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCC-ccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLE-KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
+.+++..++.+.=...++++..... +..++.+-+=||.+++.++.+.....+ +.+|.++.+ .+..|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhhhh
Confidence 3444555555544444444332111 125788999999999999999999999 788877644 5789999999997665
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 5
No 121
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=84.25 E-value=19 Score=36.14 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
.++.|+++||-+...+||+++++...
T Consensus 263 ~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 263 GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999873
No 122
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.13 E-value=10 Score=37.75 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=41.5
Q ss_pred CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC----CCChhhHHHhHHHHHHHHh
Q 010228 359 EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 359 ~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~----~~~p~~aVa~GAa~~a~~~ 412 (514)
...+.+.++++||+.+.|.+.+.|...+++.+|.. ..+++..=|.+-|+.+...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34567899999999999999999999997655542 3466666667777777654
No 123
>PTZ00297 pantothenate kinase; Provisional
Probab=83.12 E-value=63 Score=39.11 Aligned_cols=296 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred EEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHHHhh
Q 010228 39 IGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRD 118 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~~ 118 (514)
++||+|.|+++++|+.+. |...+|..+- .+|........ -|-+.--.+.+.....
T Consensus 1042 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 1096 (1452)
T PTZ00297 1042 VTIDIGGTFAKIAYVQPP---------GGFAFPTYIV---------HEASSLSEKLG-------LRTFHFFADAEAAESE 1096 (1452)
T ss_pred eEEecCceeEEEEEEeCC---------CCCCCcchhh---------hhhhhhhhccC-------ccccccccChHHhhhh
Q ss_pred hccCCeEEecCCCcceEEEEEeCCceeeeC-HHHHHHHHHHHHHHHHHhhhC--CCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 119 MKLAPYKIVNRDGKPYIQVQIRDGETKVFS-PEEISAMILTKMKETAEAFLG--KKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~-~~~v~~~~L~~l~~~a~~~~~--~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
+...|+.. .|...-.. +..=+..+++.|++.....-. .....+.+| .-..-..-...-
T Consensus 1097 ~~~~~~~~--------------~g~l~f~~f~t~~i~~~~~~l~~~~~~~~~~~~~~~~i~~T-----GGGA~k~~~~~~ 1157 (1452)
T PTZ00297 1097 LRTRPHSR--------------VGTLRFAKIPSKQIPDFADYLAGSHAINYYKPQYRTKVRAT-----GGGAFKYASVAK 1157 (1452)
T ss_pred hccCCCCC--------------ceEEEEEEecccCHHHHHHHHHhhhhhcccCcCCceEEEEe-----CCcHHHHHHHHH
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCCCce----------------------------eEEEEEcCCCeeEEEEEEEeCC
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKGGEK----------------------------NILVFDLGGGTFDVSILTIDNG 247 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~----------------------------~vlVvD~GggT~dvsv~~~~~~ 247 (514)
+..|++ +.-.+|-.|.......-.....+ .+|++++|.| +|++++++.
T Consensus 1158 ~~~~~~-~~~~dEm~~li~G~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~yp~llvNIGSG---vSi~kv~~~ 1233 (1452)
T PTZ00297 1158 KVLGIN-FSVMREMDAVVKGLNLVIRVAPESIFTVDPSTGVHHPHQLVSPPGDGFSPFPCLLVNIGSG---ISIIKCLGP 1233 (1452)
T ss_pred HHhCCC-cceecHHHHHHHHHHHHHhcCCceEEEeccccccccccccccCccccCCCCceEEEEccCc---eEEEEEecC
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHh--------cCCceEEEEEecc
Q 010228 248 VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRAL--------SSQHQVRVEIESL 319 (514)
Q Consensus 248 ~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L--------s~~~~~~i~i~~~ 319 (514)
.-+..-.+|..--||..+ -+.+|+-.|....+.| ..+...++-+.++
T Consensus 1234 ~~~~~RvgGt~iGGGT~~-------------------------GL~~llt~~~~f~e~l~~~~la~~Gd~~~vDllVgDI 1288 (1452)
T PTZ00297 1234 DGSHVRVGGSPIGGATFW-------------------------GLVRTMTNVTSWEEVMEIMRLDGPGDNKNVDLLVGDI 1288 (1452)
T ss_pred CCcEEEecCcccccHhHH-------------------------HHHHHhcCCCCHHHHHHHHHHhhCCCccccceEEeec
Q ss_pred cC------CceeEEeeeHHHHHHHH---------------------------------------------------HHHH
Q 010228 320 FD------GIDFSEPLTRARFEELN---------------------------------------------------NDLF 342 (514)
Q Consensus 320 ~~------~~~~~~~itr~~~e~~~---------------------------------------------------~~~~ 342 (514)
+. ...+.-..+-+-|-++. +++.
T Consensus 1289 yg~~~~~~~~~L~~~~iASsfGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~ 1368 (1452)
T PTZ00297 1289 YGYNAKDLPAMLSVDTVASTFGKLGTERFYEMMRGVSTAHFSDDDAAGEILSPKALKSPTVISELPVRNGTKKASAIDIV 1368 (1452)
T ss_pred cCCCcccccCCCCcceeeeccCcccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHH
Q ss_pred hhhhcHHHHHHHHc---CCCccCCCeEEEEcC-CcCcHHHHHHHHhHc-----CCCCCCCCCChhhHHHhHHHH
Q 010228 343 RKTMGPVKKAMEDA---GLEKNQIDEIVLVGG-STRIPKVQQLLKDYF-----DGKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 343 ~~i~~~i~~~l~~~---~~~~~~i~~ViLvGG-~s~~p~l~~~l~~~f-----~~~~v~~~~~p~~aVa~GAa~ 407 (514)
..++.+|...+-.. .-....++.|+++|+ ....|..++.|.... ++.+.....+..+.-|.||++
T Consensus 1369 ~sll~~is~nIgqia~l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~ 1442 (1452)
T PTZ00297 1369 RSLLNMISSNVTQLAYLHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCAT 1442 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhh
No 124
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=82.11 E-value=7.2 Score=38.58 Aligned_cols=51 Identities=18% Similarity=0.447 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH----HhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHc
Q 010228 331 RARFEELNNDL----FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYF 386 (514)
Q Consensus 331 r~~~e~~~~~~----~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f 386 (514)
.++.++++..+ ++-+.+..+++++..+ .+.++++||-+....||+++++..
T Consensus 231 ~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 231 EEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 34444454443 4444455555555533 567999999999999999999876
No 125
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.18 E-value=2 Score=46.87 Aligned_cols=40 Identities=28% Similarity=0.505 Sum_probs=30.1
Q ss_pred eEeechhhHHHHhhhhc-cCCCceeEEEEEcCCCeeEEEEEE
Q 010228 203 ARIINEPTAAAIAYGLD-KKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 203 ~~li~Ep~Aaal~~~~~-~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
..+.+-|.|..++.... ....+ +++++|+||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 44677888887776554 22223 699999999999999887
No 126
>PLN02920 pantothenate kinase 1
Probab=80.83 E-value=9.5 Score=38.56 Aligned_cols=50 Identities=12% Similarity=-0.053 Sum_probs=36.7
Q ss_pred cCCCeEEEEcCCcCcH-HHHHHHHh---Hc--CCCCCCCCCChhhHHHhHHHHHHH
Q 010228 361 NQIDEIVLVGGSTRIP-KVQQLLKD---YF--DGKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~p-~l~~~l~~---~f--~~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
..++.|+++|.+.+.+ ..++.|.. ++ .+.+.....+..+..|.||.+...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4688999999999998 66664433 22 234556677889999999987553
No 127
>PLN02666 5-oxoprolinase
Probab=79.73 E-value=22 Score=42.05 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHH-HhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHH
Q 010228 329 LTRARFEELNNDL-FRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 329 itr~~~e~~~~~~-~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 407 (514)
++-++..+-+..+ .+...+.|+......++++.+. .++..||.+ |...-.|.+.++-.++..+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 3444443333332 3344455555555556655432 445555553 67888888988433477888999999999986
Q ss_pred H
Q 010228 408 Q 408 (514)
Q Consensus 408 ~ 408 (514)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 128
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=79.65 E-value=9.4 Score=37.05 Aligned_cols=50 Identities=20% Similarity=0.192 Sum_probs=39.5
Q ss_pred CCeEEEEcC--CcCcH-HHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 363 IDEIVLVGG--STRIP-KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 363 i~~ViLvGG--~s~~p-~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
...|+|+|- +++.| .+++.|++.+ +.++... + ....|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L-~-~ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVL-D-SESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEe-c-chhhhhhHHHHHHHHhCC
Confidence 348999998 89999 9999999999 4555433 2 288999999999766654
No 129
>PRK00976 hypothetical protein; Provisional
Probab=79.63 E-value=13 Score=36.81 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCcCcH--HHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 362 QIDEIVLVGGSTRIP--KVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p--~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
+++.|+|-||.++.+ .+.+.+++.+. ..+ ..-...+.++|||+.+....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-ccc--cccCCchHHHHHHHHHHHHhC
Confidence 478899999999998 88999988883 322 223458999999998876543
No 130
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=79.46 E-value=1.8 Score=41.10 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=17.0
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010228 37 TVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~ 55 (514)
+++|||+|||++++++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 4799999999999999873
No 131
>PF13941 MutL: MutL protein
Probab=78.78 E-value=35 Score=35.62 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=33.1
Q ss_pred EEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCch-HHHHHHHHHHH
Q 010228 227 ILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG-EDFDQRVMEYF 273 (514)
Q Consensus 227 vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG-~~id~~l~~~l 273 (514)
+|++|||+.+|-++++....+..++++......-=. .|+...+.+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 699999999999999997777777776554333222 36666665544
No 132
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=76.67 E-value=27 Score=34.42 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.3
Q ss_pred cCCcEEEEEcCccceEEEEEEC
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~ 55 (514)
....++|||+|.|++.+++.+.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECC
Confidence 4678999999999999998864
No 133
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=76.61 E-value=2.5 Score=33.63 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=16.3
Q ss_pred cEEEEEcCccceEEEEEE
Q 010228 37 TVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~ 54 (514)
.++|||+|.|++++|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 479999999999999885
No 134
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=75.85 E-value=18 Score=33.50 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhHcCCC-CCCCCCChhhHHHhHHHH
Q 010228 363 IDEIVLVGGSTRIPKVQQLLKDYFDGK-EPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 363 i~~ViLvGG~s~~p~l~~~l~~~f~~~-~v~~~~~p~~aVa~GAa~ 407 (514)
-+.|++|||-...-.||++........ ......|-..++--|+.+
T Consensus 255 s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 255 SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMI 300 (336)
T ss_pred CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHH
Confidence 357999999999999999998877421 112222444555555544
No 135
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=75.80 E-value=3.1 Score=35.59 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.4
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010228 36 GTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g 56 (514)
+.++|||+|+..+++|+.++.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 368999999999999999865
No 136
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=75.55 E-value=33 Score=35.13 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.6
Q ss_pred hccCCcEEEEEcCccceEEEEEE
Q 010228 32 ATKLGTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 32 ~~~~~~vvGID~GTt~s~va~~~ 54 (514)
+++.+.+++||||.||.++++..
T Consensus 71 g~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 71 GNESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCCCEEEEecCCceEEEEEEE
Confidence 45677899999999999999864
No 137
>PRK10331 L-fuculokinase; Provisional
Probab=74.25 E-value=2.9 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.6
Q ss_pred CcEEEEEcCccceEEEEEE-CCe
Q 010228 36 GTVIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~-~g~ 57 (514)
++++|||+|||++++++++ +|+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCc
Confidence 3789999999999999986 453
No 138
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=73.65 E-value=94 Score=30.37 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=43.5
Q ss_pred HHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCc-HHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRI-PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
++++....|.+.++.... ......+.|.||..+. +++.+..++... . +|...+..||.+.|...
T Consensus 228 Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~-~------~~~~D~~~GA~~~A~~~ 292 (301)
T COG2971 228 ILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALL-V------PPIGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhc-C------CccccHHHHHHHHHHHh
Confidence 555555666666665421 2345679999999877 888888877763 2 23666888999888644
No 139
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=73.36 E-value=4.7 Score=44.58 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCC---ChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~a~ 410 (514)
.++.|+|+||.++...|++.+.+.+. +.++..+. --|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988773 23333322 337899999988763
No 140
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=72.35 E-value=8.9 Score=38.74 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=42.2
Q ss_pred eeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHH--HhhhhccCC
Q 010228 145 KVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAA--IAYGLDKKG 222 (514)
Q Consensus 145 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaa--l~~~~~~~~ 222 (514)
..+.|.+-+..+|+.++++.++...-.+..-.++|=.. .+|-.-|. +.|.+..-.
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~G-----------------------tdEGv~aWiTiN~Llg~L~ 208 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDG-----------------------TDEGVYAWITINYLLGTLG 208 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCceeeccC-----------------------cccceeeeeehhhhhcccC
Confidence 46678888999999999988743222211111222111 01111110 123222221
Q ss_pred --CceeEEEEEcCCCeeEEEEEE
Q 010228 223 --GEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 223 --~~~~vlVvD~GggT~dvsv~~ 243 (514)
....+.|+|+|||+|.++..-
T Consensus 209 ~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 209 APGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCCCCceEEEEcCCceEEEEEec
Confidence 256789999999999998765
No 141
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=71.22 E-value=4.7 Score=42.91 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.4
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g 56 (514)
+++++|||+|||++++.+++.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 5689999999999999998754
No 142
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=68.97 E-value=18 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=26.7
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q 010228 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (514)
Q Consensus 174 ~vviTVPa~~~~~qr~~l~~a~~~aGl~~ 202 (514)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67789999999999999999999999875
No 143
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=68.12 E-value=4.3 Score=43.41 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.9
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010228 36 GTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~ 55 (514)
++++|||+|||++++++++.
T Consensus 3 ~~~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDL 22 (520)
T ss_pred cEEEEEecCCCceEEEEECC
Confidence 48999999999999999873
No 144
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=67.59 E-value=4.9 Score=42.78 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.4
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010228 37 TVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~ 55 (514)
.++|||+|||++++++++.
T Consensus 3 ~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred EEEEEecCCCceEEEEECC
Confidence 7899999999999999874
No 145
>PRK15027 xylulokinase; Provisional
Probab=66.09 E-value=4.9 Score=42.51 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=16.8
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010228 37 TVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~ 55 (514)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 3699999999999999874
No 146
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=65.93 E-value=5.4 Score=41.97 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=17.1
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010228 37 TVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~ 55 (514)
.++|||+|||++++++.+.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999874
No 147
>PLN02295 glycerol kinase
Probab=65.06 E-value=5.4 Score=42.58 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=17.7
Q ss_pred cEEEEEcCccceEEEEEE-CCe
Q 010228 37 TVIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~-~g~ 57 (514)
.++|||+|||++++++++ +|+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~ 22 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR 22 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC
Confidence 479999999999999986 443
No 148
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=64.15 E-value=7.8 Score=33.25 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=18.8
Q ss_pred CCcEEEEEcCccceEEEEEECC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g 56 (514)
.+.++|||+|+..+++|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 3469999999999999998754
No 149
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=64.11 E-value=6.7 Score=42.13 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=17.0
Q ss_pred cEEEEEcCccceEEEEEE
Q 010228 37 TVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~ 54 (514)
+++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 150
>PRK04123 ribulokinase; Provisional
Probab=64.07 E-value=6.8 Score=42.21 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.6
Q ss_pred CcEEEEEcCccceEEEEEE
Q 010228 36 GTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~ 54 (514)
.+++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4799999999999999988
No 151
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=63.77 E-value=11 Score=32.99 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=0.0
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEEE
Q 010228 38 VIGIDLGTTYSCVGVYK--NGHVEIIA 62 (514)
Q Consensus 38 vvGID~GTt~s~va~~~--~g~~~~i~ 62 (514)
++|||.|++++++|+.+ ++.+.++.
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~ 28 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLA 28 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEE
No 152
>PLN02362 hexokinase
Probab=63.19 E-value=85 Score=33.36 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHcCCc--eeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEE
Q 010228 184 NDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDV 239 (514)
Q Consensus 184 ~~~qr~~l~~a~~~aGl~--~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dv 239 (514)
...-.+.+++|...-|++ +..++++.++..++..+... +..+-+=+|-||=-+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~---~~~iG~IlGTGtNac 258 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP---DTVAAVIIGTGTNAC 258 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCccce
Confidence 445678889999888864 56789999998887655432 233444456665443
No 153
>PLN02405 hexokinase
Probab=63.04 E-value=82 Score=33.34 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHcCCc--eeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEE
Q 010228 184 NDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 184 ~~~qr~~l~~a~~~aGl~--~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~ 242 (514)
...-.+.+++|.+.-|++ +..++++.++..++..+... +..+-+=+|-||=-+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~---~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP---DVVAAVILGTGTNAAYVE 261 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC---CceEEEEEeCCeeeEEEe
Confidence 445678889999888885 46789999998887755432 344444457666544443
No 154
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=62.68 E-value=7.8 Score=33.29 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.6
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010228 36 GTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g 56 (514)
+.++|+|+||-.+++|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 478999999999999998755
No 155
>PRK00047 glpK glycerol kinase; Provisional
Probab=61.62 E-value=7.2 Score=41.43 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.4
Q ss_pred CcEEEEEcCccceEEEEEE
Q 010228 36 GTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~ 54 (514)
++++|||+|||++++++++
T Consensus 5 ~~~lgiD~GTts~Ka~l~d 23 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFD 23 (498)
T ss_pred CEEEEEecCCCceEEEEEC
Confidence 4799999999999999986
No 156
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=60.86 E-value=97 Score=29.50 Aligned_cols=95 Identities=18% Similarity=0.272 Sum_probs=51.7
Q ss_pred CCCCcEEE--EcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccC-CCceeEEEEEcCCCeeEEEEEEEeC
Q 010228 170 KKIKDAVV--TVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDN 246 (514)
Q Consensus 170 ~~~~~vvi--TVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~-~~~~~vlVvD~GggT~dvsv~~~~~ 246 (514)
..+..++. .+|.+|+. -+++++.+...|.+. .+.+--.||.+....... ...+.++++|+|=|.|=..+++ +
T Consensus 112 ~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~--~ 186 (254)
T PF08735_consen 112 GRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK--D 186 (254)
T ss_pred CCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe--C
Confidence 34456666 77877552 123344444444444 455555555555433332 2467799999999999888884 4
Q ss_pred CEEEEEEecCCCCCchHHHHHHH
Q 010228 247 GVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 247 ~~~~v~~~~~~~~~GG~~id~~l 269 (514)
+.+.=+.......+-...+...+
T Consensus 187 ~rI~GvfEHHT~~l~~~kL~~~l 209 (254)
T PF08735_consen 187 GRIYGVFEHHTGMLTPEKLEEYL 209 (254)
T ss_pred CEEEEEEecccCCCCHHHHHHHH
Confidence 43333322333445555444333
No 157
>PRK13331 pantothenate kinase; Reviewed
Probab=60.71 E-value=11 Score=35.91 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=22.5
Q ss_pred hhccCCcEEEEEcCccceEEEEEECCe
Q 010228 31 EATKLGTVIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 31 ~~~~~~~vvGID~GTt~s~va~~~~g~ 57 (514)
|....+.++.||+|+|+++++++++++
T Consensus 2 ~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 2 MFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 344567889999999999999998764
No 158
>PRK07058 acetate kinase; Provisional
Probab=60.47 E-value=58 Score=33.19 Aligned_cols=47 Identities=11% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 387 (514)
.++-.+.++.+.|-...... ..+|.|+++||-+ +.+.+++.+.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34444555555555554442 2589999999999 99999999999773
No 159
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=60.43 E-value=6.5 Score=38.82 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.7
Q ss_pred ceeEEEEEcCCCeeEEEEEE
Q 010228 224 EKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 224 ~~~vlVvD~GggT~dvsv~~ 243 (514)
-.+++++|+||.|+|++++.
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 34589999999999999987
No 160
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=60.05 E-value=7.1 Score=41.59 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=16.7
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010228 37 TVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~ 55 (514)
+++|||+|||++++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999863
No 161
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=59.99 E-value=7.2 Score=41.37 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.1
Q ss_pred cEEEEEcCccceEEEEEEC
Q 010228 37 TVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~ 55 (514)
+++|||+|||++++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 5899999999999999863
No 162
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=58.57 E-value=30 Score=35.55 Aligned_cols=48 Identities=29% Similarity=0.413 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHH
Q 010228 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQL 381 (514)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~ 381 (514)
++++-+-+++.+.+++.+.+.+++..+++|..++++|-++-...+.-.
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl 102 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGL 102 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCC
Confidence 344445566777888899999999999999999999977655555443
No 163
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=58.30 E-value=41 Score=24.22 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q 010228 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr~~l~~a~~~aGl~~ 202 (514)
..-.++.|..++..+|..+.+.|+..||..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 357789999999999999999999999975
No 164
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.69 E-value=76 Score=30.23 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=42.5
Q ss_pred eEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 203 ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 203 ~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
..+++.-.||+..+..+.. ....+|+|+|-|.+..+++.- +.+.-+.......+.-..+...|.++..-
T Consensus 207 av~mDskfaav~gal~dpa--a~palvVd~GngHttaalvde--dRI~gv~EHHT~~Lspekled~I~rf~~G 275 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA--ADPALVVDYGNGHTTAALVDE--DRIVGVYEHHTIRLSPEKLEDQIIRFVEG 275 (342)
T ss_pred EEEEcchhHhhhhcccCcc--cCceEEEEccCCceEEEEecC--CeEEEEeecccccCCHHHHHHHHHHHHhc
Confidence 3455555566655544443 347899999999999998873 34433333444556666665555555443
No 165
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=57.29 E-value=2e+02 Score=28.37 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC--CCCCCCC---ChhhHHHhHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG--KEPNKGV---NPDEAVAYGAA 406 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~--~~v~~~~---~p~~aVa~GAa 406 (514)
.++.|+|+||.+...++++.|.+.+.. .++..+. --|.+++.|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 467899999999999999999988731 2333222 23667777775
No 166
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=57.12 E-value=67 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=22.8
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCC
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~ 247 (514)
+.+.+|++|+||.++-++.+++.+.
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESS
T ss_pred CCceEEEEeecCcEEEEEEEEEcCC
Confidence 5678999999999999999999876
No 167
>PTZ00107 hexokinase; Provisional
Probab=55.85 E-value=1.6e+02 Score=31.02 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeEeechhhHHHHhhhhccC-CCceeEEEEEcCCCeeEE
Q 010228 180 PAYFNDAQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDV 239 (514)
Q Consensus 180 Pa~~~~~qr~~l~~a~~~aGl~--~~~li~Ep~Aaal~~~~~~~-~~~~~vlVvD~GggT~dv 239 (514)
|..-...-.+.+++|..+.|++ ++.++++.+|..++..+... ......+-+=+|-||=-+
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~Nac 251 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNAC 251 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccce
Confidence 4444455678888998888874 57789999999887766541 112233333346555433
No 168
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=55.56 E-value=27 Score=35.96 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=49.9
Q ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHh-HcCCCCCCCCCChhhHH
Q 010228 323 IDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD-YFDGKEPNKGVNPDEAV 401 (514)
Q Consensus 323 ~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~-~f~~~~v~~~~~p~~aV 401 (514)
..-.+.||..|++++. -.-.-+..-++-.+++++++..++++|+|.||+++.=-..+.++= .+|........--..+.
T Consensus 289 ~~~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 4456789999998763 223345566788899999999999999999999986666666543 22322111111223466
Q ss_pred HhHHHHHH
Q 010228 402 AYGAAVQG 409 (514)
Q Consensus 402 a~GAa~~a 409 (514)
-.||.+..
T Consensus 368 l~GA~~~L 375 (412)
T PF14574_consen 368 LAGARMAL 375 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 67776544
No 169
>PLN02669 xylulokinase
Probab=54.65 E-value=11 Score=40.62 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.6
Q ss_pred cCCcEEEEEcCccceEEEEEE
Q 010228 34 KLGTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~ 54 (514)
+..+++|||+||+.+++++++
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLD 26 (556)
T ss_pred CCCeEEEEecccCCeEEEEEc
Confidence 356899999999999999986
No 170
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=54.63 E-value=11 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 010228 38 VIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 38 vvGID~GTt~s~va~~~ 54 (514)
++|||+|||++++++++
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 68999999999999986
No 171
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.57 E-value=32 Score=33.71 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=31.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC--------CCCCCCCChhhHHHhHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG--------KEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~--------~~v~~~~~p~~aVa~GAa~~a 409 (514)
+++.|+|-||.+..+.+.+.+++.+.. .++......+.+.++||+..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 467888888777766666666665521 112233345678899999765
No 172
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=52.99 E-value=25 Score=30.62 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEE
Q 010228 38 VIGIDLGTTYSCVGVYK--NGHVEII 61 (514)
Q Consensus 38 vvGID~GTt~s~va~~~--~g~~~~i 61 (514)
++|||-|+++++.|+.+ +++...+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 69999999999999875 4455554
No 173
>PLN02914 hexokinase
Probab=52.47 E-value=2.2e+02 Score=30.13 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=39.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC--ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 179 VPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 179 VPa~~~~~qr~~l~~a~~~aGl--~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
++..-...-.+.|++|.+.-|+ ++..++++.++..++..+... +..+-+=+|-||=-+.+-+
T Consensus 199 ~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~---~~~iGlIlGTGtNacY~E~ 262 (490)
T PLN02914 199 VSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD---DVMVAVILGTGTNACYVER 262 (490)
T ss_pred cCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC---CceEEEEEECCeeeEEEee
Confidence 3333344567888999888886 456789999998887755432 2344444566665544443
No 174
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=52.46 E-value=1.6e+02 Score=30.96 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=45.9
Q ss_pred EcCCCCCHHHHHHHHHHHHHcCCc---eeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEe
Q 010228 178 TVPAYFNDAQRQATKDAGIIAGLN---VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID 245 (514)
Q Consensus 178 TVPa~~~~~qr~~l~~a~~~aGl~---~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~ 245 (514)
.++......-.+.+++|.+.-|+. +..+++..++..++..+.. +++++-+=+|.||--+-+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~---~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED---PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC---CCcEEEEEECCCccceeeeecc
Confidence 344445556678899999999986 5668999988887765543 3566666778888766665554
No 175
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=52.42 E-value=2e+02 Score=30.04 Aligned_cols=51 Identities=6% Similarity=0.073 Sum_probs=33.6
Q ss_pred EEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhc
Q 010228 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 281 (514)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~ 281 (514)
+|+|+.+|-++.+..++..+...+....+..= .|+...|.+...++++++.
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~-~dv~~G~~~~a~~~l~~~~ 51 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES-DHLAGGFFNKANEKLNEDL 51 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch-hhhhcchHHHHHHHHHHhc
Confidence 59999999999998887766666555542222 3666664555555555543
No 176
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=50.49 E-value=41 Score=33.91 Aligned_cols=46 Identities=26% Similarity=0.199 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCC-C--CCCCCChhhHHHhHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK-E--PNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~-~--v~~~~~p~~aVa~GAa~ 407 (514)
+++.|++.||.+..+.+++.+.+.+... + +....+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 5789999999999999999998877422 2 23333446788888853
No 177
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=50.45 E-value=1.3e+02 Score=29.41 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=25.1
Q ss_pred HcCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCC
Q 010228 197 IAGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGG 235 (514)
Q Consensus 197 ~aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~Ggg 235 (514)
..|++ +.+.++..|+|++-.... ....++++.+.+|.|
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 44775 678999999888753322 223467778788765
No 178
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=50.28 E-value=16 Score=32.46 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.0
Q ss_pred CcEEEEEcCccceEEEEEE
Q 010228 36 GTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~ 54 (514)
+.++|||-|++++++++.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 4799999999999999875
No 179
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=49.50 E-value=35 Score=36.60 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCC---ChhhHHHhHHHHHHHHhc
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~a~~~~ 413 (514)
.++.|+|+||.+...++++.|.+.+. +.++..+. --|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 35689999999999999999996652 23343332 346788888887654443
No 180
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=49.33 E-value=62 Score=33.19 Aligned_cols=28 Identities=29% Similarity=0.692 Sum_probs=23.4
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeC-CEEE
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDN-GVFE 250 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~-~~~~ 250 (514)
+.+.+|++|+||..+-++.+++.+ +.+.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~ 101 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFD 101 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcc
Confidence 567899999999999999999983 4443
No 181
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=48.10 E-value=67 Score=23.05 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=26.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q 010228 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (514)
Q Consensus 174 ~vviTVPa~~~~~qr~~l~~a~~~aGl~~ 202 (514)
...++.|+.++..||..+.+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36789999999999999999999999865
No 182
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=45.79 E-value=6.1 Score=40.83 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=39.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCC-----C------CC---CCCCChhhHHHhHHHHHHHHh
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDG-----K------EP---NKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~-----~------~v---~~~~~p~~aVa~GAa~~a~~~ 412 (514)
-.+.|.+|||+...|++.+.|++...+ . .| ....||...+-+|||+++..-
T Consensus 526 l~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~ 590 (618)
T KOG0797|consen 526 LFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILD 590 (618)
T ss_pred hhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHH
Confidence 346799999999999999999887632 1 12 223588999999999998643
No 183
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=45.74 E-value=13 Score=31.44 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.6
Q ss_pred EEEEcCccceEEEEEECC
Q 010228 39 IGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g 56 (514)
+|||+|+..+++|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999988653
No 184
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.35 E-value=54 Score=23.59 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=26.0
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q 010228 174 DAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (514)
Q Consensus 174 ~vviTVPa~~~~~qr~~l~~a~~~aGl~~ 202 (514)
.-.++.|+.+++.+|+.+...|...|+..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 55678899999999999999999999865
No 185
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=3.6e+02 Score=27.03 Aligned_cols=222 Identities=15% Similarity=0.127 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHhhhCCC---CCcEEEEcCCCCCHHHHHHHHHHHHHcCC--ceeEeechhhHHHHhhhhccCCCceeE
Q 010228 153 SAMILTKMKETAEAFLGKK---IKDAVVTVPAYFNDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNI 227 (514)
Q Consensus 153 ~~~~L~~l~~~a~~~~~~~---~~~vviTVPa~~~~~qr~~l~~a~~~aGl--~~~~li~Ep~Aaal~~~~~~~~~~~~v 227 (514)
=..-+..+.+.+-...+.. ..-+.+|+-....-.-+.-++-|-..|+- +.+--|.--+|-|+...+......-.+
T Consensus 82 Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~v~FPF 161 (405)
T KOG2707|consen 82 HRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDSVRFPF 161 (405)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCCcCCce
Confidence 3444555555554433333 33466777666554444445555444432 222335666777777766554455566
Q ss_pred EEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhc
Q 010228 228 LVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS 307 (514)
Q Consensus 228 lVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 307 (514)
+.+=+-||.+-+.+.+- -+.++++...-|... |+.+|..-. +.+...... .....-.++|..-..-+
T Consensus 162 l~lLvSGGH~llvla~~-~~~~~llg~TvDiAp-Ge~lDK~ar---------~Lgl~~~~e--~~~~~g~aie~la~~~s 228 (405)
T KOG2707|consen 162 LALLVSGGHTLLVLANG-VGDHELLGQTVDIAP-GEALDKCAR---------RLGLLGHPE--DARSGGKAIEHLANRAS 228 (405)
T ss_pred eeEeeeCCceEEEEecc-ccceeeeecccccch-HHHHHHHHH---------HhcCCCCcc--chhhhhhHHHHHHhccC
Confidence 76667788887776653 234566665554433 455654322 223222211 11111122222111111
Q ss_pred C------------CceEEEEEecccCC-------cee--EEeeeHHHHH-HHHHHHHhhhhcHHHHHHHHcCCCccCCCe
Q 010228 308 S------------QHQVRVEIESLFDG-------IDF--SEPLTRARFE-ELNNDLFRKTMGPVKKAMEDAGLEKNQIDE 365 (514)
Q Consensus 308 ~------------~~~~~i~i~~~~~~-------~~~--~~~itr~~~e-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 365 (514)
. ...+++++..+... ... .....+.+|. .+-...+..+.+....+++...+.+..+..
T Consensus 229 ~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~ 308 (405)
T KOG2707|consen 229 ADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQPKNVKQ 308 (405)
T ss_pred ccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCce
Confidence 1 01111111110000 000 0011222232 111223444455555566665566677889
Q ss_pred EEEEcCCcCcHHHHHHHHhHcC
Q 010228 366 IVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 366 ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
.++.||-++..+|+.+|+....
T Consensus 309 lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 309 LVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred EEEcCCccchHHHHHHHHHHHH
Confidence 9999999999999999988763
No 186
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=42.50 E-value=3.5e+02 Score=26.77 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCC---ChhhHHHhH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYG 404 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~aVa~G 404 (514)
.++.|+|+||.+...++++.|.+.+. +.++..+. --|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 36689999999999999999999652 23333222 225566666
No 187
>PLN02377 3-ketoacyl-CoA synthase
Probab=41.79 E-value=58 Score=34.51 Aligned_cols=54 Identities=7% Similarity=0.237 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEE-EcCCcCcHHHHHHHHhHcC
Q 010228 334 FEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~l~~~l~~~f~ 387 (514)
++...++..+-+.+.++++|+++++++.+|+.|+. +.+....|.+..+|.+.++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 34444444445577889999999999999999987 4444468999999999994
No 188
>PRK13326 pantothenate kinase; Reviewed
Probab=41.57 E-value=30 Score=33.22 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.8
Q ss_pred cEEEEEcCccceEEEEEECCe
Q 010228 37 TVIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~ 57 (514)
..+.||+|+|+++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 579999999999999998765
No 189
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=41.50 E-value=76 Score=22.48 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCce
Q 010228 159 KMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (514)
Q Consensus 159 ~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~ 202 (514)
.+.+..+.++... .-.++.|. .+..+|..+.+.|...|+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444444444333 45678898 89999999999999998864
No 190
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=41.33 E-value=49 Score=31.90 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=40.3
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCC-----------CceeEEEEEcCCCeeEE
Q 010228 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-----------GEKNILVFDLGGGTFDV 239 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~-----------~~~~vlVvD~GggT~dv 239 (514)
.++|+|---.=-..||..=|. .-..|++.-+++-+|+-+|+.|++.-.- +++.-|-+=+-+|||..
T Consensus 251 ~H~VLswt~~D~N~qk~LNrk-llk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNA 327 (403)
T COG2069 251 DHVVLSWTQMDVNMQKTLNRK-LLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNA 327 (403)
T ss_pred CceEEEeeccChHHHHHHHHH-HHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcch
Confidence 456665432222344443343 4456799999999999999999875321 44555555555565543
No 191
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=40.37 E-value=4.9e+02 Score=27.83 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=51.7
Q ss_pred eeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHH-HHHHhHcCCCCCCCCC-ChhhHHHhHH
Q 010228 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQ-QLLKDYFDGKEPNKGV-NPDEAVAYGA 405 (514)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~-~~l~~~f~~~~v~~~~-~p~~aVa~GA 405 (514)
+....++....+..+++++-.+...+.+.. ..+.+.+.||.+..-... ..+++.+ ...+...+ -.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 334455556666666666666555555421 156799999999877776 5555554 33444333 3467899999
Q ss_pred HHHHHHhc
Q 010228 406 AVQGGILS 413 (514)
Q Consensus 406 a~~a~~~~ 413 (514)
|++++...
T Consensus 330 Al~~~~~~ 337 (555)
T COG2192 330 ALAVKREL 337 (555)
T ss_pred HHHHHHHh
Confidence 99986543
No 192
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=39.76 E-value=3.2e+02 Score=26.08 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcC
Q 010228 331 RARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTR 374 (514)
Q Consensus 331 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 374 (514)
++..+.+...++......|+..+++....-..-..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 44556666677777777777777664322223457999999865
No 193
>PRK13320 pantothenate kinase; Reviewed
Probab=39.54 E-value=37 Score=32.28 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.6
Q ss_pred cEEEEEcCccceEEEEEECCe
Q 010228 37 TVIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~ 57 (514)
..+.||.|+|+++.+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 479999999999999998764
No 194
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=38.97 E-value=21 Score=34.88 Aligned_cols=42 Identities=31% Similarity=0.563 Sum_probs=26.8
Q ss_pred ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 201 NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 201 ~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
+...+.+-|.|.+..... .....++++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~-~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAA-RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH---HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhh-hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 445667778777766554 222456789999999999999987
No 195
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=38.12 E-value=42 Score=35.36 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=17.9
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 010228 35 LGTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~ 54 (514)
...++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 35789999999999999986
No 196
>PLN03170 chalcone synthase; Provisional
Probab=37.41 E-value=1e+02 Score=31.75 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=38.6
Q ss_pred HHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 010228 340 DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (514)
Q Consensus 340 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 387 (514)
...+-..+..+++|+++++++++|++|+.+-.+. .+|.+.-.|.+.++
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3444456778899999999999999988766544 69999999999994
No 197
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.22 E-value=21 Score=36.92 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHH-----cCCce------eEeechhhHHHHhhhhccCC----Cc-eeEEEEEcCCCeeEEEEEE
Q 010228 185 DAQRQATKDAGII-----AGLNV------ARIINEPTAAAIAYGLDKKG----GE-KNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 185 ~~qr~~l~~a~~~-----aGl~~------~~li~Ep~Aaal~~~~~~~~----~~-~~vlVvD~GggT~dvsv~~ 243 (514)
...|+.+++.... -|++. ..+++-|.|...+...-... .+ ..++++|+||-|||+--+.
T Consensus 193 epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 193 EAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 3456666665322 24432 34566677766554332221 11 3589999999999986554
No 198
>PLN03173 chalcone synthase; Provisional
Probab=36.87 E-value=1.1e+02 Score=31.31 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=37.7
Q ss_pred HHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 010228 341 LFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (514)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 387 (514)
..+-..+..+++|+++++++.+|++|+.+.-+. ..|.+.-.|.+.++
T Consensus 102 a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 334446678889999999999999998776544 58999999999984
No 199
>PTZ00107 hexokinase; Provisional
Probab=35.42 E-value=1.2e+02 Score=31.90 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCC
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~ 247 (514)
+.+.+|.+|+||.++-+..+++.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4567999999999999999999864
No 200
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=34.93 E-value=76 Score=30.90 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=37.0
Q ss_pred hhcHHHHHHHHcCCCccCCCeEE-EEcCCcCcHHHHHHHHhHcC
Q 010228 345 TMGPVKKAMEDAGLEKNQIDEIV-LVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 345 i~~~i~~~l~~~~~~~~~i~~Vi-LvGG~s~~p~l~~~l~~~f~ 387 (514)
+...++++|+++++++.+|+.++ -+..++-.|.|-.+|.+.|+
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 46778899999999999999764 46677899999999999994
No 201
>PLN03172 chalcone synthase family protein; Provisional
Probab=34.31 E-value=1.2e+02 Score=31.05 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=39.0
Q ss_pred HHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 010228 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 387 (514)
+...+-..+..+++|+++++.+.+|++|+++-.+. .+|.+.-.|.+.++
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33444456678889999999999999998766554 69999999999994
No 202
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=33.37 E-value=45 Score=31.66 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=17.2
Q ss_pred EEEEcCccceEEEEEECCe
Q 010228 39 IGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g~ 57 (514)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6899999999999998775
No 203
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=33.07 E-value=36 Score=31.43 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCc---eeEeechhhHHHHhhhh
Q 010228 186 AQRQATKDAGIIAGLN---VARIINEPTAAAIAYGL 218 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~---~~~li~Ep~Aaal~~~~ 218 (514)
.-.+.+++|....|++ ++.++++.+|..++..+
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3456778888888876 46689999998887644
No 204
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=32.32 E-value=50 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.3
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 010228 38 VIGIDLGTTYSCVGVYKNGHV 58 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~ 58 (514)
.+.||+|+|+++.|+++++++
T Consensus 2 ~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred eEEEEeCCCeEEEEEecCCeE
Confidence 489999999999999986654
No 205
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=31.51 E-value=24 Score=36.98 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.6
Q ss_pred EEEEcCccceEEEEEE
Q 010228 39 IGIDLGTTYSCVGVYK 54 (514)
Q Consensus 39 vGID~GTt~s~va~~~ 54 (514)
+|||+|||++++++++
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999886
No 206
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=31.47 E-value=82 Score=30.04 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAV 407 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 407 (514)
.++.|+| |++..|++.+.+++.++ ..+ ...||.+++|+=+.-
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTAW 213 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHHH
Confidence 4667766 99999999999999984 232 456888888876653
No 207
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=31.22 E-value=29 Score=36.59 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.3
Q ss_pred EEEEcCccceEEEEEEC
Q 010228 39 IGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 39 vGID~GTt~s~va~~~~ 55 (514)
+|||+|||++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999873
No 208
>PRK13324 pantothenate kinase; Reviewed
Probab=31.17 E-value=55 Score=31.39 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=17.6
Q ss_pred EEEEEcCccceEEEEEECCe
Q 010228 38 VIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~ 57 (514)
++.||.|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 68999999999999998654
No 209
>PLN02902 pantothenate kinase
Probab=31.07 E-value=2.4e+02 Score=31.92 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=31.6
Q ss_pred cCCCeEEEEcCCcCc-----HHHHHHHHhHcC--CCCCCCCCChhhHHHhHHHHHHH
Q 010228 361 NQIDEIVLVGGSTRI-----PKVQQLLKDYFD--GKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~-----p~l~~~l~~~f~--~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
..++.|+++|.+-+- ..|...+. ++. ..+.....+-.+.-|.||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 468899999998543 33444444 332 23445556777899999987654
No 210
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=30.79 E-value=63 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECCeE
Q 010228 38 VIGIDLGTTYSCVGVYKNGHV 58 (514)
Q Consensus 38 vvGID~GTt~s~va~~~~g~~ 58 (514)
.+-||+|+|+++++++++++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987754
No 211
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=30.10 E-value=93 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.8
Q ss_pred CcEEEEEcCccceEEEEEE--CCeEEEE
Q 010228 36 GTVIGIDLGTTYSCVGVYK--NGHVEII 61 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~--~g~~~~i 61 (514)
+.+++||+|+-|.+.++.+ ++.+.++
T Consensus 1 mii~sIDiGikNlA~~iie~~~~~i~~~ 28 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEGNKIRVI 28 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCCCeEEEE
Confidence 3689999999999999886 3334444
No 212
>PLN03168 chalcone synthase; Provisional
Probab=29.20 E-value=1.5e+02 Score=30.37 Aligned_cols=50 Identities=20% Similarity=0.285 Sum_probs=38.5
Q ss_pred HHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCC-cCcHHHHHHHHhHcC
Q 010228 338 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGS-TRIPKVQQLLKDYFD 387 (514)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~l~~~l~~~f~ 387 (514)
.+...+-..+..+++|+++++++++|++|+.+-.+ -.+|.+.-.|.+.++
T Consensus 98 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 98 VVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 33444445677889999999999999999875333 357999999999994
No 213
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=29.19 E-value=4e+02 Score=24.18 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=48.8
Q ss_pred cCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccceeeEEEeCC
Q 010228 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGG 440 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s~gi~~~~~ 440 (514)
.++..|++.+|+ -|+++..+++..+ +.-... .++.+-..-+. .+|
T Consensus 88 ~di~fiVvSsGm--~~fI~~lfe~ivg-ke~i~~-------------------------------idi~sn~~~ih-~dg 132 (220)
T COG4359 88 HDIPFIVVSSGM--DPFIYPLFEGIVG-KERIYC-------------------------------IDIVSNNDYIH-IDG 132 (220)
T ss_pred cCCCEEEEeCCC--chHHHHHHHhhcc-ccceee-------------------------------eEEeecCceEc-CCC
Confidence 468889999998 6899999888873 321111 11111111111 345
Q ss_pred EEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc
Q 010228 441 VMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR 480 (514)
Q Consensus 441 ~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~ 480 (514)
....+-+..++....++......+...++ -+|+|++.
T Consensus 133 ~h~i~~~~ds~fG~dK~~vI~~l~e~~e~---~fy~GDsv 169 (220)
T COG4359 133 QHSIKYTDDSQFGHDKSSVIHELSEPNES---IFYCGDSV 169 (220)
T ss_pred ceeeecCCccccCCCcchhHHHhhcCCce---EEEecCCc
Confidence 55566677777777777665544433333 78888865
No 214
>PLN02854 3-ketoacyl-CoA synthase
Probab=29.15 E-value=1.1e+02 Score=32.73 Aligned_cols=43 Identities=9% Similarity=0.331 Sum_probs=35.7
Q ss_pred hhcHHHHHHHHcCCCccCCCeEEE-EcCCcCcHHHHHHHHhHcC
Q 010228 345 TMGPVKKAMEDAGLEKNQIDEIVL-VGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 345 i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~l~~~l~~~f~ 387 (514)
+...++++|+++++++++|+.|+. +.+....|.+-.+|.+.++
T Consensus 192 ~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 192 MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 466788899999999999999987 4444468999999999994
No 215
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=29.02 E-value=1.4e+02 Score=30.61 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=33.9
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 387 (514)
+++-.+.++.+.|-...... ...+|.|+++||.+ +.+.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444455555555554442 13599999999999 99999999998774
No 216
>PRK12408 glucokinase; Provisional
Probab=28.99 E-value=40 Score=33.72 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.9
Q ss_pred ccCCcEEEEEcCccceEEEEEEC
Q 010228 33 TKLGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 33 ~~~~~vvGID~GTt~s~va~~~~ 55 (514)
+++..++|+|+|.|++++++.+.
T Consensus 13 ~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 13 PRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cccccEEEEEcChhhhheeEEec
Confidence 34455899999999999999863
No 217
>PRK00292 glk glucokinase; Provisional
Probab=28.51 E-value=57 Score=32.22 Aligned_cols=41 Identities=29% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHcCCceeEeechhhHHHHhhhhc---------cCC--CceeEEEEEcCCCe
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLD---------KKG--GEKNILVFDLGGGT 236 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~---------~~~--~~~~vlVvD~GggT 236 (514)
+..|++.+.+.++-.|+|++-... ... ..+.++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 345887789999999999985331 111 13567888777664
No 218
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=27.53 E-value=3.2e+02 Score=28.73 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCCE
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNGV 248 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (514)
+.+.++.+|+||..+-+..+.+.++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 56789999999999999999998773
No 219
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=27.49 E-value=3.5e+02 Score=23.63 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=49.2
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHH----------------HHHHHHHHHHcCCceeEeechhh
Q 010228 147 FSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQ----------------RQATKDAGIIAGLNVARIINEPT 210 (514)
Q Consensus 147 ~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~q----------------r~~l~~a~~~aGl~~~~li~Ep~ 210 (514)
.+++++...+.+.+.+...+.- .. .+.|++|...+... .+.+++ ..++ .+.+.++..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~-pv~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGV-PVIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTS-EEEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccce-EEEEecCCC
Confidence 4566766666665555544432 11 45555554332221 233333 3355 467899999
Q ss_pred HHHHhhhhccC-CCceeEEEEEcCCCeeEEEEE
Q 010228 211 AAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 211 Aaal~~~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (514)
|+|++...... ...++++.+-+|-| .-.+++
T Consensus 103 ~~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 103 AAALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred cceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 99988755332 24567788888776 444444
No 220
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=27.41 E-value=2.6e+02 Score=25.98 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhh
Q 010228 172 IKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYG 217 (514)
Q Consensus 172 ~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~ 217 (514)
+.-++|+ .|++.-...+|+ .++++++.+..-...+|+.++
T Consensus 70 vdaiiIa---Cf~DPgl~~~Re---~~~~PviGi~eAsv~~A~~vg 109 (230)
T COG4126 70 VDAIIIA---CFSDPGLAAARE---RAAIPVIGICEASVLAALFVG 109 (230)
T ss_pred CcEEEEE---ecCChHHHHHHH---HhCCCceehhHHHHHHHHHhc
Confidence 4555654 567655555554 568899999998888888774
No 221
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=27.20 E-value=53 Score=34.12 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=18.5
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
++++++||-|||.+++.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 579999999999999988863
No 222
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=26.72 E-value=70 Score=28.03 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=15.3
Q ss_pred EEEEEcCccceEEEEEE
Q 010228 38 VIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 38 vvGID~GTt~s~va~~~ 54 (514)
++|||-|++.++.++.+
T Consensus 1 ILGIDPGl~~tG~gvi~ 17 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIR 17 (156)
T ss_pred CEeECcccccccEEEEE
Confidence 58999999999999865
No 223
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=26.34 E-value=6.9e+02 Score=25.30 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 010228 263 EDFDQRVMEYFIKLI 277 (514)
Q Consensus 263 ~~id~~l~~~l~~~~ 277 (514)
+.||+.|.+.+.+++
T Consensus 13 D~iD~~iv~Ll~~R~ 27 (374)
T PRK11199 13 DEVDKQLLELLAKRL 27 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999998887664
No 224
>PLN02596 hexokinase-like
Probab=25.90 E-value=8.2e+02 Score=25.97 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCC--ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEE
Q 010228 184 NDAQRQATKDAGIIAGL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (514)
Q Consensus 184 ~~~qr~~l~~a~~~aGl--~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (514)
...-.+.+++|.+..|+ +++.++++.++..++..+... +..+-+=+|-||=-+.+-+.
T Consensus 204 G~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~---~~~iG~I~GTGtNacY~E~~ 263 (490)
T PLN02596 204 GKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK---DTVAAVTLGMGTNAAYVEPA 263 (490)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC---CeEEEEEEecccceEEEEEc
Confidence 34556677888887777 456789999999887765532 33343446777655444443
No 225
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=25.78 E-value=2e+02 Score=20.92 Aligned_cols=60 Identities=10% Similarity=0.210 Sum_probs=34.2
Q ss_pred hhHhhHhhCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHH
Q 010228 99 IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILT 158 (514)
Q Consensus 99 ~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~ 158 (514)
...+.+++|...+...+.+.+..+.|.+...+....+.+..+.-........+++.++.+
T Consensus 8 ~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R~Di~~~~DliEei~r 67 (71)
T smart00874 8 RERINRLLGLDLSAEEIEEILKRLGFEVEVSGDDDTLEVTVPSYRFDILIEADLIEEVAR 67 (71)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCCCeEEEECCCCccccCcccHHHHHHHH
Confidence 345678889888777777777777777653221223444432222233445566665543
No 226
>PF11052 Tr-sialidase_C: Trans-sialidase of Trypanosoma hydrophobic C-terminal; InterPro: IPR021287 This is a highly conserved region, of about 50aa, that is the very C terminus of a number of more diverse proteins from Trypanosoma cruzi. All members of the family are annotated putatively as being trans-sialidase but this appears to be a diverse group.
Probab=25.34 E-value=79 Score=18.28 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=10.9
Q ss_pred CcccccccchhHHHH
Q 010228 2 AGSWRARGSLVVLAI 16 (514)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (514)
+|+||-..+.+++++
T Consensus 1 ~gt~~~~~~l~lLLl 15 (25)
T PF11052_consen 1 AGTVRGSGLLPLLLL 15 (25)
T ss_pred CCceeccchHHHHHH
Confidence 578888888765554
No 227
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.96 E-value=44 Score=28.20 Aligned_cols=11 Identities=36% Similarity=0.335 Sum_probs=5.5
Q ss_pred ccchhHHHHHH
Q 010228 8 RGSLVVLAIVF 18 (514)
Q Consensus 8 ~~~~~~~~~~~ 18 (514)
||++.+|+|++
T Consensus 1 RW~l~~iii~~ 11 (130)
T PF12273_consen 1 RWVLFAIIIVA 11 (130)
T ss_pred CeeeHHHHHHH
Confidence 56665444333
No 228
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=24.70 E-value=3e+02 Score=26.94 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHH
Q 010228 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK 279 (514)
Q Consensus 224 ~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~ 279 (514)
...++.+|+|+.++.++++...+..+..........-....+-+.+.+.+.+.+..
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 60 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQ 60 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHh
Confidence 45789999999999999999877754444333333333357777777776665543
No 229
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=24.63 E-value=2e+02 Score=27.89 Aligned_cols=70 Identities=27% Similarity=0.393 Sum_probs=44.9
Q ss_pred eeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHH
Q 010228 328 PLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAV 401 (514)
Q Consensus 328 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aV 401 (514)
.++.++|++..-|.+.+|.+.+.+.+.+.++. .+--|+..-|+.- .|.++-..-+.-.....+.||.++.
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g~--~Le~l~~tG~DVvgLDWTvdp~ear 288 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSGG--ALEELAQTGYDVVGLDWTVDPAEAR 288 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcch--HHHHHHhcCCcEEeecccccHHHHH
Confidence 47999999999999999999999999987654 3555666655542 2333222222111234455666544
No 230
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.53 E-value=2.8e+02 Score=20.36 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=34.5
Q ss_pred hhHhhHhhCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHH
Q 010228 99 IFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILT 158 (514)
Q Consensus 99 ~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~ 158 (514)
...+++++|.+.+...+.+.+..+.|.+...++ ..+.+..+.-......+.+++.++++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~-~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDG-DTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CT-TEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCC-CEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 346788999988888888888999998875322 23333332223334567787777764
No 231
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=24.20 E-value=62 Score=36.61 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=17.5
Q ss_pred cEEEEEcCccceEEEEEECC
Q 010228 37 TVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g 56 (514)
++||+|+||+.++.|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999998643
No 232
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=23.48 E-value=10 Score=33.43 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.5
Q ss_pred cEEEEEcCccceEEEEEECC
Q 010228 37 TVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g 56 (514)
-.+|+|+||+|++++..++.
T Consensus 58 d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 58 DILGTGLGTNNAIREEREKS 77 (213)
T ss_pred ceeccCCCcchHHHHHHhcc
Confidence 57999999999988876543
No 233
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=22.84 E-value=1.1e+02 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.9
Q ss_pred CcEEEEEcCccc-----eEEEEEECCeE
Q 010228 36 GTVIGIDLGTTY-----SCVGVYKNGHV 58 (514)
Q Consensus 36 ~~vvGID~GTt~-----s~va~~~~g~~ 58 (514)
..+++|||-||+ ++.|+.+++..
T Consensus 2 ~~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 2 KKVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred CeeEEEEEecccCCCCCceeEEecCCeE
Confidence 358999999998 99998876644
No 234
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=22.71 E-value=1.9e+02 Score=22.37 Aligned_cols=22 Identities=18% Similarity=0.290 Sum_probs=17.6
Q ss_pred eEEEEEcCCCeeEEEEEEEeCC
Q 010228 226 NILVFDLGGGTFDVSILTIDNG 247 (514)
Q Consensus 226 ~vlVvD~GggT~dvsv~~~~~~ 247 (514)
.+|.+|+||..+-++++..++.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~ 23 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK 23 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC
Confidence 3789999999999998875544
No 235
>PRK00865 glutamate racemase; Provisional
Probab=22.70 E-value=1.9e+02 Score=27.75 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 408 (514)
.++.|+| |++.+|++.+.+++.++ ..+ ...||..++|.=+.-+
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~-~~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLG-EGV-TLIDSGEAIARRVARL 219 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcC-CCC-EEECCHHHHHHHHHHH
Confidence 4667766 88999999999999984 222 3358888888776544
No 236
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.17 E-value=83 Score=28.18 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=15.6
Q ss_pred EEEEcCccceEEEEEECC
Q 010228 39 IGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 39 vGID~GTt~s~va~~~~g 56 (514)
||||.|.|||=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999988877765
No 237
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.12 E-value=88 Score=29.59 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=34.7
Q ss_pred ccCCCeEEEEcCCcCcHH---HHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 360 KNQIDEIVLVGGSTRIPK---VQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 360 ~~~i~~ViLvGG~s~~p~---l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
....+.|+|.|.-+.... ++..|+....++ + ..-|.++.+.|.|+.|.-...
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k-~--~~l~~esaaiG~a~IA~DI~~ 320 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNK-V--AVLPPESAAIGLALIARDIAS 320 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHH-H--hhcCchhhhhhhHHHHHHHHc
Confidence 345778999998887776 666666655222 2 123455689999998876554
No 238
>PF14239 RRXRR: RRXRR protein
Probab=21.88 E-value=1.1e+02 Score=27.34 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.5
Q ss_pred ccCCcEEEEEcCccceEEEEEECC
Q 010228 33 TKLGTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 33 ~~~~~vvGID~GTt~s~va~~~~g 56 (514)
......+|||-|+.++++|+..+.
T Consensus 48 ~~qpi~lgiDpGsk~tGiav~~~~ 71 (176)
T PF14239_consen 48 YTQPIRLGIDPGSKTTGIAVVSEK 71 (176)
T ss_pred cccCEEEEECCCCCeEEEEEEeCC
Confidence 345689999999999999998766
No 239
>PRK13321 pantothenate kinase; Reviewed
Probab=21.77 E-value=3.5e+02 Score=25.73 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=15.6
Q ss_pred EEEEEcCCCeeEEEEEE
Q 010228 227 ILVFDLGGGTFDVSILT 243 (514)
Q Consensus 227 vlVvD~GggT~dvsv~~ 243 (514)
+|.+|+|+.++.+.++.
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 57899999999999998
No 240
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=21.51 E-value=1.3e+02 Score=25.68 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=18.6
Q ss_pred cCCcEEEEEcCccceEEEEEE-CCeEEEE
Q 010228 34 KLGTVIGIDLGTTYSCVGVYK-NGHVEII 61 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~-~g~~~~i 61 (514)
++..+||||-|||. ++|+.+ +|.+-.+
T Consensus 30 ~~~lIVGiDPG~tt-giAildL~G~~l~l 57 (138)
T PF04312_consen 30 RRYLIVGIDPGTTT-GIAILDLDGELLDL 57 (138)
T ss_pred CCCEEEEECCCcee-EEEEEecCCcEEEE
Confidence 45689999999884 555554 7765433
No 241
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=20.95 E-value=1.4e+02 Score=28.83 Aligned_cols=54 Identities=33% Similarity=0.490 Sum_probs=32.6
Q ss_pred cCCCeEEEEcCCcCcHHH----HHHHHhHcC----CCCCCC--CCChhhHHHhHHHHHHHHhcC
Q 010228 361 NQIDEIVLVGGSTRIPKV----QQLLKDYFD----GKEPNK--GVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~p~l----~~~l~~~f~----~~~v~~--~~~p~~aVa~GAa~~a~~~~~ 414 (514)
...+.|+|.|-++++|.+ ++.|++.|. +..+.. ..--.--.|.|||+.|.-+++
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAG 335 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAG 335 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcc
Confidence 456789999999998765 455555553 112221 111223467888888765554
No 242
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=20.81 E-value=2.7e+02 Score=28.63 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcC
Q 010228 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFD 387 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~ 387 (514)
+-.+.++.+.|-......+ ..+|.|+++||-+ +.+.+++.+.+.+.
T Consensus 307 ~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 307 KMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3344445555544444321 2489999999999 99999999998774
No 243
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=20.62 E-value=69 Score=22.84 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=17.1
Q ss_pred cccchhHHHHHHHh-hhhhhhhhhh
Q 010228 7 ARGSLVVLAIVFFG-GLFAISIAKE 30 (514)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~~~~~~~ 30 (514)
+||++.+-|++||+ .+.++..+|.
T Consensus 10 triVLLISfiIlfgRl~Y~~I~a~~ 34 (59)
T PF11119_consen 10 TRIVLLISFIILFGRLIYSAIGAWV 34 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 67888777788888 6666666654
No 244
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.56 E-value=2.1e+02 Score=27.84 Aligned_cols=50 Identities=30% Similarity=0.319 Sum_probs=30.5
Q ss_pred eEEEEcCCcCc-HHHHHHHHhHcCCC---CCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 365 EIVLVGGSTRI-PKVQQLLKDYFDGK---EPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 365 ~ViLvGG~s~~-p~l~~~l~~~f~~~---~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
.|+++||.-.+ ..+++-........ +-.....|.+.-|.|||++|+.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 69999998654 33333322222111 1123346888999999999987654
No 245
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=20.41 E-value=57 Score=23.68 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=13.2
Q ss_pred ccchhHHHHHHHhhhhhhh
Q 010228 8 RGSLVVLAIVFFGGLFAIS 26 (514)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~ 26 (514)
.-.+||+||+|+++..-++
T Consensus 4 ~Si~VLlaLvLIg~fAVqS 22 (71)
T PF04202_consen 4 LSIAVLLALVLIGSFAVQS 22 (71)
T ss_pred hhHHHHHHHHHHhhheeee
Confidence 3467889998887665444
No 246
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=20.40 E-value=4.4e+02 Score=27.84 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=34.0
Q ss_pred eeEEEEEcCCCeeEEEEEEEeCCEEEE-EEecCCCCCchHHHHHHHHH
Q 010228 225 KNILVFDLGGGTFDVSILTIDNGVFEV-LSTNGDTHLGGEDFDQRVME 271 (514)
Q Consensus 225 ~~vlVvD~GggT~dvsv~~~~~~~~~v-~~~~~~~~~GG~~id~~l~~ 271 (514)
.+=+-+|+|.+++-.-++....+...- ..+....--||+++|.+...
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~ 211 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFA 211 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHH
Confidence 345789999999999999988765433 33444445799999887653
No 247
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=20.12 E-value=1.8e+02 Score=29.24 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=21.5
Q ss_pred EEEEEcCCCeeEEEEEEEeCCEEEEE
Q 010228 227 ILVFDLGGGTFDVSILTIDNGVFEVL 252 (514)
Q Consensus 227 vlVvD~GggT~dvsv~~~~~~~~~v~ 252 (514)
+||++.|+.++.+++++.+...++..
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~ 27 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEET 27 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeee
Confidence 79999999999999998776655443
Done!