Query 010228
Match_columns 514
No_of_seqs 310 out of 2234
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 22:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yuw_A Heat shock cognate 71 k 100.0 1.2E-80 4.1E-85 660.6 54.4 469 36-509 4-474 (554)
2 4b9q_A Chaperone protein DNAK; 100.0 4.5E-80 1.5E-84 662.2 55.7 460 36-509 2-472 (605)
3 3d2f_A Heat shock protein homo 100.0 4.4E-78 1.5E-82 651.1 53.1 459 37-506 3-474 (675)
4 2kho_A Heat shock protein 70; 100.0 1.5E-78 5.3E-83 650.3 46.1 458 37-508 3-471 (605)
5 2v7y_A Chaperone protein DNAK; 100.0 5.5E-73 1.9E-77 597.3 50.8 433 37-508 3-440 (509)
6 3i33_A Heat shock-related 70 k 100.0 4.5E-65 1.5E-69 524.2 46.6 379 35-414 22-403 (404)
7 3qfu_A 78 kDa glucose-regulate 100.0 3.8E-64 1.3E-68 515.7 46.3 378 35-413 17-394 (394)
8 4gni_A Putative heat shock pro 100.0 5.8E-63 2E-67 509.0 41.5 380 34-415 11-404 (409)
9 1dkg_D Molecular chaperone DNA 100.0 7.7E-61 2.6E-65 489.2 40.7 370 37-412 3-382 (383)
10 1jce_A ROD shape-determining p 100.0 1.5E-41 5.1E-46 341.4 22.5 310 37-413 4-327 (344)
11 2ych_A Competence protein PILM 100.0 8E-29 2.7E-33 251.8 12.1 321 35-410 12-373 (377)
12 2fsj_A Hypothetical protein TA 100.0 6.9E-29 2.3E-33 248.3 10.5 227 147-410 95-343 (346)
13 3h1q_A Ethanolamine utilizatio 99.9 9.4E-27 3.2E-31 225.7 22.3 204 149-409 69-272 (272)
14 1k8k_A ARP3, actin-like protei 99.9 1.1E-26 3.9E-31 239.0 17.3 226 172-410 107-386 (418)
15 4a2a_A Cell division protein F 99.9 2.5E-27 8.4E-32 242.1 11.1 198 186-411 168-393 (419)
16 2fxu_A Alpha-actin-1, actin, a 99.9 3.1E-26 1.1E-30 232.2 18.2 298 36-410 5-348 (375)
17 2zgy_A Plasmid segregation pro 99.9 3.1E-23 1E-27 205.6 11.4 227 146-409 73-319 (320)
18 1k8k_B ARP2, actin-like protei 99.8 9.7E-22 3.3E-26 200.1 6.1 214 173-410 105-363 (394)
19 4ehu_A Activator of 2-hydroxyi 99.8 7.6E-18 2.6E-22 163.2 19.0 180 198-413 69-256 (276)
20 3js6_A Uncharacterized PARM pr 99.8 3.6E-18 1.2E-22 170.6 12.3 203 173-413 114-338 (355)
21 4apw_A ALP12; actin-like prote 99.7 4.2E-18 1.5E-22 168.7 2.6 202 173-411 106-324 (329)
22 3qb0_A Actin-related protein 4 99.7 4.6E-16 1.6E-20 160.4 14.7 179 36-275 23-209 (498)
23 3dwl_A Actin-related protein 3 99.7 1E-16 3.5E-21 163.7 8.9 242 150-410 102-395 (427)
24 3dob_A Heat shock 70 kDa prote 99.5 1.3E-13 4.3E-18 119.5 9.8 81 425-509 2-83 (152)
25 3dqg_A Heat shock 70 kDa prote 99.5 1.3E-13 4.4E-18 119.3 9.8 81 425-509 2-83 (151)
26 3h0x_A 78 kDa glucose-regulate 99.5 1.5E-13 5.2E-18 119.2 8.8 81 425-509 2-83 (152)
27 4fo0_A Actin-related protein 8 99.4 1.4E-11 4.9E-16 132.0 25.4 110 157-275 177-293 (593)
28 4e81_A Chaperone protein DNAK; 99.4 2.1E-13 7.3E-18 125.7 8.7 82 424-509 2-84 (219)
29 3n8e_A Stress-70 protein, mito 99.4 3.2E-13 1.1E-17 120.4 8.6 84 422-509 19-103 (182)
30 1q5l_A Chaperone protein DNAK; 99.4 1.9E-13 6.5E-18 116.1 5.1 86 420-509 14-100 (135)
31 2d0o_A DIOL dehydratase-reacti 99.4 2.9E-13 9.9E-18 136.4 6.8 197 186-411 368-604 (610)
32 1nbw_A Glycerol dehydratase re 99.4 4.9E-13 1.7E-17 135.2 6.8 195 187-410 371-605 (607)
33 2op6_A Heat shock 70 kDa prote 99.4 1.7E-12 6E-17 113.1 9.4 81 425-509 2-83 (152)
34 1u00_A HSC66, chaperone protei 99.2 2E-11 6.8E-16 113.6 9.5 78 427-508 2-80 (227)
35 1hux_A Activator of (R)-2-hydr 99.0 9.8E-09 3.3E-13 98.3 18.0 172 202-412 76-257 (270)
36 2ews_A Pantothenate kinase; PA 98.4 7.5E-06 2.6E-10 78.2 17.1 47 363-409 237-286 (287)
37 4am6_A Actin-like protein ARP8 98.2 6E-06 2.1E-10 86.2 11.2 121 173-309 222-346 (655)
38 1t6c_A Exopolyphosphatase; alp 97.5 0.0019 6.5E-08 62.7 14.4 79 186-269 98-177 (315)
39 2i7n_A Pantothenate kinase 1; 97.2 0.0013 4.3E-08 64.5 10.0 71 334-409 278-358 (360)
40 3vgl_A Glucokinase; ROK family 97.0 0.041 1.4E-06 53.4 18.9 45 197-243 95-140 (321)
41 4db3_A Glcnac kinase, N-acetyl 97.0 0.06 2E-06 52.4 19.5 48 362-409 269-324 (327)
42 3eno_A Putative O-sialoglycopr 96.9 0.16 5.4E-06 49.5 21.9 67 343-414 235-306 (334)
43 2ivn_A O-sialoglycoprotein end 96.9 0.2 7E-06 48.6 22.5 49 363-411 245-298 (330)
44 3r8e_A Hypothetical sugar kina 96.9 0.039 1.3E-06 53.5 17.1 49 362-410 260-318 (321)
45 2e2o_A Hexokinase; acetate and 96.8 0.39 1.3E-05 45.8 24.8 49 362-411 239-287 (299)
46 3cer_A Possible exopolyphospha 96.7 0.0033 1.1E-07 61.7 8.3 79 187-269 104-191 (343)
47 3vov_A Glucokinase, hexokinase 96.7 0.21 7.3E-06 47.8 20.7 49 362-410 237-294 (302)
48 2ch5_A NAGK protein; transfera 96.6 0.56 1.9E-05 45.7 24.4 60 171-236 70-132 (347)
49 2gup_A ROK family protein; sug 96.5 0.21 7.1E-06 47.6 19.2 50 362-411 227-287 (292)
50 4htl_A Beta-glucoside kinase; 96.4 0.095 3.2E-06 50.2 16.0 50 362-411 237-291 (297)
51 3mdq_A Exopolyphosphatase; str 96.4 0.016 5.4E-07 56.2 10.4 79 186-269 90-170 (315)
52 2itm_A Xylulose kinase, xylulo 96.2 0.0048 1.7E-07 63.8 6.1 78 336-414 360-437 (484)
53 2qm1_A Glucokinase; alpha-beta 96.2 0.12 4.1E-06 50.0 15.7 49 363-411 263-321 (326)
54 3l0q_A Xylulose kinase; xlylul 96.2 0.0063 2.2E-07 64.0 6.7 85 329-415 409-493 (554)
55 4bc3_A Xylulose kinase; transf 96.2 0.0083 2.9E-07 62.9 7.6 78 335-414 407-484 (538)
56 2zf5_O Glycerol kinase; hypert 96.1 0.009 3.1E-07 62.0 7.2 77 335-414 367-443 (497)
57 3hz6_A Xylulokinase; xylulose, 96.0 0.011 3.8E-07 61.5 7.9 77 335-415 377-454 (511)
58 3ll3_A Gluconate kinase; xylul 95.9 0.0096 3.3E-07 61.9 6.6 78 336-415 367-444 (504)
59 3i8b_A Xylulose kinase; strain 95.9 0.0071 2.4E-07 63.0 5.6 76 335-415 397-475 (515)
60 1u6z_A Exopolyphosphatase; alp 95.9 0.088 3E-06 54.6 13.7 77 187-269 98-176 (513)
61 2dpn_A Glycerol kinase; thermu 95.5 0.02 6.9E-07 59.3 7.0 78 335-414 370-448 (495)
62 3g25_A Glycerol kinase; IDP007 95.5 0.012 4.1E-07 61.1 5.2 79 336-416 377-456 (501)
63 2ap1_A Putative regulator prot 95.4 0.47 1.6E-05 45.8 16.4 43 198-242 120-163 (327)
64 2hoe_A N-acetylglucosamine kin 95.4 0.64 2.2E-05 46.0 17.7 42 198-242 188-229 (380)
65 3ifr_A Carbohydrate kinase, FG 95.4 0.011 3.8E-07 61.4 4.8 74 337-415 375-451 (508)
66 3jvp_A Ribulokinase; PSI-II, N 95.4 0.013 4.4E-07 61.9 5.2 77 336-414 413-490 (572)
67 4e1j_A Glycerol kinase; struct 95.4 0.0097 3.3E-07 62.1 4.2 52 362-415 425-476 (520)
68 1z6r_A MLC protein; transcript 95.3 0.27 9.3E-06 49.2 14.6 43 198-242 186-229 (406)
69 3h3n_X Glycerol kinase; ATP-bi 95.3 0.014 4.9E-07 60.6 5.2 52 362-415 403-454 (506)
70 2p3r_A Glycerol kinase; glycer 95.2 0.012 4E-07 61.3 4.3 77 337-415 375-452 (510)
71 3ezw_A Glycerol kinase; glycer 95.2 0.025 8.5E-07 59.0 6.6 53 362-416 402-454 (526)
72 3en9_A Glycoprotease, O-sialog 95.1 2.7 9.3E-05 43.6 22.1 185 171-387 72-273 (540)
73 3htv_A D-allose kinase, alloki 95.1 1 3.4E-05 43.2 17.3 50 362-411 239-299 (310)
74 2d4w_A Glycerol kinase; alpha 95.0 0.018 6E-07 59.9 4.9 51 362-414 403-453 (504)
75 2w40_A Glycerol kinase, putati 94.8 0.023 7.8E-07 59.0 5.1 73 337-414 380-457 (503)
76 2uyt_A Rhamnulokinase; rhamnos 94.5 0.031 1.1E-06 57.7 5.2 47 362-411 393-439 (489)
77 1z05_A Transcriptional regulat 94.5 0.46 1.6E-05 47.9 13.8 43 198-242 208-251 (429)
78 1zbs_A Hypothetical protein PG 94.1 0.75 2.6E-05 43.6 13.6 66 338-411 212-280 (291)
79 3h6e_A Carbohydrate kinase, FG 90.9 0.16 5.5E-06 52.2 4.3 71 335-411 362-435 (482)
80 3bex_A Type III pantothenate k 90.8 0.86 2.9E-05 42.2 8.8 21 37-57 4-24 (249)
81 3hi0_A Putative exopolyphospha 89.6 0.85 2.9E-05 47.0 8.5 77 186-268 101-178 (508)
82 1zc6_A Probable N-acetylglucos 89.2 15 0.00051 34.7 24.9 63 338-410 228-292 (305)
83 3ven_A O-carbamoyltransferase 89.0 19 0.00066 37.3 18.0 79 331-414 280-360 (576)
84 2yhx_A Hexokinase B; transfera 88.5 0.94 3.2E-05 45.9 7.7 55 186-243 164-220 (457)
85 3o8m_A Hexokinase; rnaseh-like 87.9 3.2 0.00011 42.3 11.1 57 185-244 185-243 (485)
86 3qbx_A Anhydro-N-acetylmuramic 86.5 1.1 3.9E-05 43.6 6.6 73 337-412 261-337 (371)
87 3cqy_A Anhydro-N-acetylmuramic 82.2 2.5 8.5E-05 41.2 6.8 70 336-411 267-342 (370)
88 3ezw_A Glycerol kinase; glycer 80.9 0.89 3E-05 47.2 3.5 22 34-55 2-23 (526)
89 3ttc_A HYPF, transcriptional r 79.1 3.1 0.0001 44.0 6.8 50 362-411 599-651 (657)
90 3mcp_A Glucokinase; structural 78.6 12 0.00041 36.5 10.6 23 34-56 7-29 (366)
91 1bdg_A Hexokinase; phosphotran 76.7 7.9 0.00027 39.1 8.8 56 185-243 172-229 (451)
92 1iv0_A Hypothetical protein; r 76.4 1.8 6.2E-05 33.6 3.1 20 37-56 2-21 (98)
93 4g9i_A Hydrogenase maturation 75.9 6.3 0.00021 42.7 8.2 51 362-412 705-760 (772)
94 3vth_A Hydrogenase maturation 74.4 3.7 0.00013 44.3 6.0 53 362-414 693-750 (761)
95 3i8b_A Xylulose kinase; strain 74.4 2.1 7.2E-05 44.2 4.0 21 34-54 3-23 (515)
96 3h6e_A Carbohydrate kinase, FG 74.1 1.4 4.8E-05 45.1 2.5 21 35-55 5-25 (482)
97 3epq_A Putative fructokinase; 72.9 9.2 0.00031 36.2 7.9 43 198-242 97-140 (302)
98 3ifr_A Carbohydrate kinase, FG 72.4 2.5 8.7E-05 43.5 4.0 21 35-55 6-26 (508)
99 2p3r_A Glycerol kinase; glycer 70.7 2.4 8.1E-05 43.8 3.3 21 35-55 2-22 (510)
100 4bc3_A Xylulose kinase; transf 69.2 3.2 0.00011 43.1 3.9 22 34-55 8-29 (538)
101 1nu0_A Hypothetical protein YQ 69.1 3.8 0.00013 34.0 3.6 20 37-56 4-23 (138)
102 1cza_N Hexokinase type I; stru 67.8 19 0.00064 39.9 9.9 54 186-242 184-240 (917)
103 3l0q_A Xylulose kinase; xlylul 67.6 3.3 0.00011 43.2 3.6 21 35-55 4-24 (554)
104 3ll3_A Gluconate kinase; xylul 66.5 3.3 0.00011 42.6 3.4 21 35-55 3-23 (504)
105 3h3n_X Glycerol kinase; ATP-bi 66.3 3.8 0.00013 42.1 3.8 21 35-55 4-24 (506)
106 1hjr_A Holliday junction resol 64.7 8.2 0.00028 32.7 4.9 18 37-54 2-19 (158)
107 3aap_A Ectonucleoside triphosp 64.2 7.9 0.00027 37.7 5.4 41 203-243 111-158 (353)
108 1vhx_A Putative holliday junct 63.8 3.6 0.00012 34.6 2.5 21 36-56 3-23 (150)
109 3djc_A Type III pantothenate k 63.5 5.3 0.00018 37.2 3.8 71 329-410 182-254 (266)
110 2uyt_A Rhamnulokinase; rhamnos 63.0 3.9 0.00013 41.8 3.1 20 35-54 3-22 (489)
111 3hz6_A Xylulokinase; xylulose, 62.6 4.1 0.00014 41.9 3.2 21 35-55 4-24 (511)
112 3o8m_A Hexokinase; rnaseh-like 62.6 24 0.00083 35.7 8.8 57 223-279 78-140 (485)
113 2w40_A Glycerol kinase, putati 62.4 4.3 0.00015 41.7 3.3 20 36-55 4-23 (503)
114 1cza_N Hexokinase type I; stru 61.8 31 0.0011 38.2 10.2 57 184-243 630-689 (917)
115 3jvp_A Ribulokinase; PSI-II, N 61.7 4.4 0.00015 42.4 3.2 21 35-55 4-24 (572)
116 2dpn_A Glycerol kinase; thermu 61.6 4.1 0.00014 41.7 3.0 20 36-55 2-21 (495)
117 3hm8_A Hexokinase-3; glucose, 61.1 34 0.0012 34.2 9.4 55 186-243 161-218 (445)
118 3g25_A Glycerol kinase; IDP007 60.7 4.7 0.00016 41.4 3.2 22 36-57 6-28 (501)
119 2aa4_A Mannac kinase, putative 60.0 8.1 0.00028 36.1 4.5 48 362-409 233-286 (289)
120 2zf5_O Glycerol kinase; hypert 60.0 4.9 0.00017 41.2 3.2 20 36-55 3-22 (497)
121 4e1j_A Glycerol kinase; struct 59.2 5.1 0.00017 41.3 3.2 22 36-57 26-48 (520)
122 3cj1_A Ectonucleoside triphosp 58.5 20 0.00068 36.1 7.3 43 201-243 150-208 (456)
123 3cet_A Conserved archaeal prot 58.0 7.8 0.00027 37.1 3.9 40 201-243 106-145 (334)
124 4ep4_A Crossover junction endo 56.0 8.1 0.00028 33.1 3.3 19 36-54 1-19 (166)
125 2d4w_A Glycerol kinase; alpha 54.2 7 0.00024 40.1 3.2 20 36-55 2-21 (504)
126 2itm_A Xylulose kinase, xylulo 51.8 7.6 0.00026 39.6 3.0 20 38-57 2-22 (484)
127 3f9m_A Glucokinase; hexokinase 51.7 50 0.0017 33.3 8.8 55 185-242 184-241 (470)
128 1saz_A Probable butyrate kinas 50.4 23 0.0008 34.6 6.2 49 362-410 295-347 (381)
129 2yhx_A Hexokinase B; transfera 49.9 74 0.0025 31.9 9.9 56 223-278 59-120 (457)
130 2e1z_A Propionate kinase; TDCD 46.4 2.2E+02 0.0074 28.0 12.2 26 361-386 329-355 (415)
131 2h3g_X Biosynthetic protein; p 44.4 16 0.00056 33.8 3.8 73 329-411 180-252 (268)
132 1woq_A Inorganic polyphosphate 42.9 16 0.00054 33.7 3.4 43 198-242 114-158 (267)
133 3epq_A Putative fructokinase; 42.0 32 0.0011 32.3 5.6 49 362-410 224-288 (302)
134 3zx3_A Ectonucleoside triphosp 40.8 33 0.0011 34.4 5.5 43 201-243 150-199 (452)
135 3zyy_X Iron-sulfur cluster bin 40.4 44 0.0015 35.0 6.6 83 325-408 498-581 (631)
136 3hm8_A Hexokinase-3; glucose, 39.0 90 0.0031 31.1 8.3 30 223-253 57-86 (445)
137 1bdg_A Hexokinase; phosphotran 38.2 1E+02 0.0035 30.8 8.8 56 223-278 66-128 (451)
138 1zxo_A Conserved hypothetical 36.4 15 0.0005 34.4 2.1 46 362-410 232-277 (291)
139 1nbw_A Glycerol dehydratase re 35.8 22 0.00074 36.6 3.2 44 173-216 131-175 (607)
140 2yhw_A Bifunctional UDP-N-acet 35.2 71 0.0024 30.4 6.9 43 198-242 131-174 (343)
141 1msz_A DNA-binding protein smu 35.2 30 0.001 25.8 3.2 28 175-202 34-61 (86)
142 1zxo_A Conserved hypothetical 33.9 4.1 0.00014 38.4 -2.3 59 172-236 58-118 (291)
143 2f9w_A Pantothenate kinase; CO 33.6 33 0.0011 31.9 3.9 21 37-57 24-45 (271)
144 3cet_A Conserved archaeal prot 33.4 26 0.00088 33.5 3.2 38 38-75 2-44 (334)
145 3f9m_A Glucokinase; hexokinase 32.8 1.1E+02 0.0037 30.8 7.8 25 223-247 75-99 (470)
146 2q2r_A Glucokinase 1, putative 32.4 38 0.0013 32.9 4.4 21 35-55 28-48 (373)
147 1saz_A Probable butyrate kinas 32.1 38 0.0013 33.1 4.4 21 36-56 2-22 (381)
148 2yhw_A Bifunctional UDP-N-acet 30.6 26 0.00089 33.5 2.8 23 35-57 29-52 (343)
149 1sz2_A Glucokinase, glucose ki 30.3 32 0.0011 32.8 3.4 41 196-236 99-150 (332)
150 1hnj_A Beta-ketoacyl-acyl carr 27.9 62 0.0021 30.3 5.0 49 336-387 211-259 (317)
151 3zyy_X Iron-sulfur cluster bin 27.7 1.3E+02 0.0044 31.5 7.6 40 339-378 266-305 (631)
152 4am6_A Actin-like protein ARP8 27.3 22 0.00074 37.4 1.6 28 34-61 38-65 (655)
153 3sk3_A Acetate kinase, acetoki 26.6 2.2E+02 0.0074 28.0 8.6 156 186-386 200-364 (415)
154 2q2r_A Glucokinase 1, putative 23.4 48 0.0017 32.1 3.3 18 198-215 127-144 (373)
155 1ub7_A 3-oxoacyl-[acyl-carrier 22.7 82 0.0028 29.5 4.8 48 337-387 214-261 (322)
156 3nuw_A 2-OXO-3-deoxygalactonat 22.2 66 0.0022 30.2 3.8 43 364-409 248-290 (295)
157 2qm1_A Glucokinase; alpha-beta 21.9 1.8E+02 0.0062 27.0 7.1 26 225-250 6-31 (326)
158 2ebd_A 3-oxoacyl-[acyl-carrier 21.8 90 0.0031 29.0 4.8 46 339-387 206-251 (309)
159 2ap1_A Putative regulator prot 21.5 2.5E+02 0.0086 26.1 8.0 52 224-276 23-74 (327)
160 3qvl_A Putative hydantoin race 21.4 91 0.0031 28.2 4.5 39 362-406 174-212 (245)
161 3ist_A Glutamate racemase; str 20.4 74 0.0025 29.3 3.7 45 361-409 177-221 (269)
No 1
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=100.00 E-value=1.2e-80 Score=660.61 Aligned_cols=469 Identities=66% Similarity=1.007 Sum_probs=437.9
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
+.+||||||||||++|++.+|.++++.+++|++++||+|+|.+++++||..|+.+...+|+++++++|+++|+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence 46899999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred HhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
+..++.+||+++..+|.+.+.+.+ .+..+.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 84 ~~~~~~~p~~v~~~~g~~~~~v~~-~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~ 162 (554)
T 1yuw_A 84 QSDMKHWPFMVVNDAGRPKVQVEY-KGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162 (554)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEE-TTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEecCCceEEEEEE-CCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999778888888887 6667889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
+.||++++++++||+|||++|+..... .+..++|||+||||+|++++++.++.+++++..++..+||++||++|.+++.
T Consensus 163 ~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~ 242 (554)
T 1yuw_A 163 TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242 (554)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999876542 4688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAME 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 354 (514)
++++++++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+|.++...|+|++|+++++++++++.++++++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~ 322 (554)
T 1yuw_A 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR 322 (554)
T ss_dssp HHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHH
T ss_pred HHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred HcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccceee
Q 010228 355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLG 434 (514)
Q Consensus 355 ~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s~g 434 (514)
++++.+.+++.|+|+||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.+++......+++++.|++|++||
T Consensus 323 ~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slg 402 (554)
T 1yuw_A 323 DAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLG 402 (554)
T ss_dssp HTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEE
T ss_pred HcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEE
Confidence 99999899999999999999999999999999767888889999999999999999988753333567889999999999
Q ss_pred EEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccccccc
Q 010228 435 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLKL 509 (514)
Q Consensus 435 i~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (514)
+++.+|.|.++|+||+++|++++..|++..|+|+.+.|.+|||+.. +.+| ..|+.+.++|+|+..++.+++
T Consensus 403 i~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n----~~lg~~~l~~i~~~~~g~~~i 474 (554)
T 1yuw_A 403 IETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN----NLLGKFELTGIPPAPRGVPQI 474 (554)
T ss_dssp EEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGS----EEEEEEEEECCCCCSTTCCCE
T ss_pred EEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccC----cEEEEEEEeCCCCCcccccEE
Confidence 9999999999999999999999999999999999999999999998 6665 368999999999877765543
No 2
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=100.00 E-value=4.5e-80 Score=662.20 Aligned_cols=460 Identities=52% Similarity=0.857 Sum_probs=428.6
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
..+||||||||||++|++.+|.++++.+..|.+++||+|+|.+ +++++|..|+.+...+|.++++++|+++|++++++.
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 3689999999999999999999999999999999999999975 489999999999999999999999999999999999
Q ss_pred HHhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (514)
Q Consensus 115 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~ 193 (514)
++...+.+||+++ ..+|...+.+ . ...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~~~~---~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~ 156 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAADNGDAWVEV---K--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKD 156 (605)
T ss_dssp HHHHHTTCSSEEEECTTSBEEEEE---T--TEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcCCCceEEEE---C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 9999999999998 5556555543 3 36899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeC----CEEEEEEecCCCCCchHHHHHHH
Q 010228 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDN----GVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 194 a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~----~~~~v~~~~~~~~~GG~~id~~l 269 (514)
|++.|||+++++++||+|||++|++.....+.+++|||+||||+|++++++.+ +.++++++.++..+||++||++|
T Consensus 157 Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l 236 (605)
T 4b9q_A 157 AGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRL 236 (605)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHH
Confidence 99999999999999999999999888766678999999999999999999988 89999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCC----ceeEEeeeHHHHHHHHHHHHhhh
Q 010228 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDG----IDFSEPLTRARFEELNNDLFRKT 345 (514)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~----~~~~~~itr~~~e~~~~~~~~~i 345 (514)
.+++.++|+++++.++..+++.+.+|+.+||++|+.||...+..+.++.+..+ .++.++|||++|+++++|+++++
T Consensus 237 ~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i 316 (605)
T 4b9q_A 237 INYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRS 316 (605)
T ss_dssp HHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888765433 57889999999999999999999
Q ss_pred hcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEE
Q 010228 346 MGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILL 425 (514)
Q Consensus 346 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~ 425 (514)
..+++++|+++++...+|+.|+||||+|++|+|++.|++.| +.++....||+++||+|||++|+.+++. .+++++
T Consensus 317 ~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAai~a~~l~~~----~~~~~l 391 (605)
T 4b9q_A 317 IEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLL 391 (605)
T ss_dssp THHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHH-TSCCCSSSCTTTHHHHHHHHHHHHHHTS----SCSEEE
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHh-ccCcCCCcChhHHHHHhHHHHHHHhcCC----CCceEE
Confidence 99999999999999999999999999999999999999999 6888889999999999999999999876 358999
Q ss_pred EecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcc
Q 010228 426 LDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLK 504 (514)
Q Consensus 426 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 504 (514)
.|++|++||+++.+|.|.++||||+++|++++..|++..|+|+.+.|.+|||++. +.+| ..|+.|.++|+|+..+
T Consensus 392 ~dv~p~slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n----~~lg~~~l~~i~~~~~ 467 (605)
T 4b9q_A 392 LDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADN----KSLGQFNLDGINPAPR 467 (605)
T ss_dssp ECBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGS----EEEEEEEEECCCCCST
T ss_pred EeeeeeEEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccC----CEeeEEEEeCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999998 7766 4799999999999877
Q ss_pred ccccc
Q 010228 505 SHLKL 509 (514)
Q Consensus 505 ~~~~~ 509 (514)
+.+++
T Consensus 468 g~~~i 472 (605)
T 4b9q_A 468 GMPQI 472 (605)
T ss_dssp TCCCE
T ss_pred CCceE
Confidence 76543
No 3
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=100.00 E-value=4.4e-78 Score=651.10 Aligned_cols=459 Identities=30% Similarity=0.473 Sum_probs=422.0
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (514)
.+||||||||||++|++.+|.++++.|+.|++.+||+|+|.++++++|..|+.+...+|.++++++|+++|+.++++.++
T Consensus 3 ~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 82 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFE 82 (675)
T ss_dssp CCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHH
T ss_pred cEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228 117 RDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG 195 (514)
Q Consensus 117 ~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~ 195 (514)
...+.+||+++ ..+|...+.+.+ .|..+.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 83 ~~~~~~p~~v~~~~~g~~~~~~~~-~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 161 (675)
T 3d2f_A 83 QESKHFTSKLVELDDKKTGAEVRF-AGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161 (675)
T ss_dssp HHHTTCCSEEEECTTSBEEEEEEE-TTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHhhCCeeEEEcCCCceEEEEEe-CCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999988 457777777776 6666789999999999999999999999988999999999999999999999999
Q ss_pred HHcCCceeEeechhhHHHHhhhhccC------CCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLDKK------GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRV 269 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~~~------~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 269 (514)
+.||++++++++||+|||++|++... ..+.+++|||+||||||++++++.++.++++++.++..+||++||+.|
T Consensus 162 ~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l 241 (675)
T 3d2f_A 162 RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAI 241 (675)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHH
Confidence 99999999999999999999987552 356889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHH
Q 010228 270 MEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPV 349 (514)
Q Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 349 (514)
.+++.++|+++++.++..+++.+.+|+.+||++|+.||...+..+.++.+.++.++..+|||++|+++++|+++++.+++
T Consensus 242 ~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i 321 (675)
T 3d2f_A 242 TEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPV 321 (675)
T ss_dssp HHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998999999999999999999999988888999888888899999999999999999999999999
Q ss_pred HHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecc
Q 010228 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVA 429 (514)
Q Consensus 350 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~ 429 (514)
+++|+++++.+.+|+.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++... .+++++.|++
T Consensus 322 ~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~f-g~~~~~~~nPdeaVA~GAa~~a~~ls~~~~--v~~~~l~Dv~ 398 (675)
T 3d2f_A 322 TKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICAIHSPTLR--VRPFKFEDIH 398 (675)
T ss_dssp HHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHH-TSCEECCSCTTTHHHHHHHHHHHHTCSSCC--CCCCEEEEEE
T ss_pred HHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhc-CCCccccCCcchHHHHHHHHHHHHhCCCCc--ccceEEEeee
Confidence 9999999999999999999999999999999999999 677888899999999999999999987643 6789999999
Q ss_pred cceeeEEEeCC----EEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-cc-ccccccceeceEEecCCCcCc
Q 010228 430 PLTLGIETVGG----VMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IA-DCLGNSIFLEFLQLLGEPLKL 503 (514)
Q Consensus 430 ~~s~gi~~~~~----~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 503 (514)
|++||+++.++ .+.+|||+|+++|++++.+|++..++| +.+. |+|++. +. +| ..|+.|.++|+|++.
T Consensus 399 p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n----~~lg~f~l~gi~~~~ 471 (675)
T 3d2f_A 399 PYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTP----EQIANWEITGVQLPE 471 (675)
T ss_dssp CSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCC----SEEEEEEEECCCCCS
T ss_pred ecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccC----ceeeEEEecCcCCCC
Confidence 99999999876 499999999999999999998876553 3333 788877 54 44 478999999999865
Q ss_pred ccc
Q 010228 504 KSH 506 (514)
Q Consensus 504 ~~~ 506 (514)
++.
T Consensus 472 ~g~ 474 (675)
T 3d2f_A 472 GQD 474 (675)
T ss_dssp SCS
T ss_pred CCC
Confidence 553
No 4
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=100.00 E-value=1.5e-78 Score=650.30 Aligned_cols=458 Identities=53% Similarity=0.870 Sum_probs=421.3
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++.+|.++++.|+.|.+++||+|+|.+ ++++||..|+.+...+|+++++++|+++|+.++++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v 82 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTH
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHH
Confidence 489999999999999999999999999999999999999954 5899999999999999999999999999999988888
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
+...+.+||+++ ..+|...+.+ +| +.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~i~~---~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A 157 (605)
T 2kho_A 83 QRDVSIMPFKIIAADNGDAWVEV---KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDA 157 (605)
T ss_dssp HHHHHHCSSCEEECTTSBEEEEE---TT--EEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHhhcCCeEEEECCCCceEEEE---CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHH
Confidence 888888999987 6667666654 33 57899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEe----CCEEEEEEecCCCCCchHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVM 270 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~----~~~~~v~~~~~~~~~GG~~id~~l~ 270 (514)
++.||++++++++||+|||++|+......+.++||||+||||||++++++. ++.++++++.++..+||++||+.|.
T Consensus 158 ~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~ 237 (605)
T 2kho_A 158 GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLI 237 (605)
T ss_dssp HHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHH
T ss_pred HHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHH
Confidence 999999999999999999999987664467899999999999999999998 7899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC---C-ceeEEeeeHHHHHHHHHHHHhhhh
Q 010228 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD---G-IDFSEPLTRARFEELNNDLFRKTM 346 (514)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~ 346 (514)
+++.++|+++++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+ | .++..+|||++|+++++|+++++.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~ 317 (605)
T 2kho_A 238 NYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSI 317 (605)
T ss_dssp HHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHH
Confidence 999999999999999889999999999999999999999888888876654 2 466789999999999999999999
Q ss_pred cHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEE
Q 010228 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLL 426 (514)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~ 426 (514)
++++++|+++++...+++.|+||||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++. .+++++.
T Consensus 318 ~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f-g~~~~~~~npd~aVA~GAa~~a~~l~~~----~~~~~l~ 392 (605)
T 2kho_A 318 EPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLL 392 (605)
T ss_dssp SHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHHTTTTTS----CCCCCCS
T ss_pred HHHHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhc-CCCcCcCCCcchHHHHHHHHHHHHhcCC----ccCceEE
Confidence 9999999999998899999999999999999999999999 6778889999999999999999988764 3578899
Q ss_pred ecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccc
Q 010228 427 DVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKS 505 (514)
Q Consensus 427 ~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
|++|++||+++.+|.|.++||||+++|++++..|++..|+|+.+.|.+|||++. +.+| ..|+.+.++|+|++.++
T Consensus 393 dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n----~~lg~~~l~~i~~~~~g 468 (605)
T 2kho_A 393 DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADN----KSLGQFNLDGINPAPRG 468 (605)
T ss_dssp BCCCCCEEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGS----EEEEEEEEECCCSCCTT
T ss_pred eeeeeeccccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccC----cEEeEEEecCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999988 6666 46899999999987666
Q ss_pred ccc
Q 010228 506 HLK 508 (514)
Q Consensus 506 ~~~ 508 (514)
.++
T Consensus 469 ~~~ 471 (605)
T 2kho_A 469 MPQ 471 (605)
T ss_dssp CSC
T ss_pred CcE
Confidence 543
No 5
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=100.00 E-value=5.5e-73 Score=597.29 Aligned_cols=433 Identities=58% Similarity=0.908 Sum_probs=396.7
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQ 116 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 116 (514)
.+||||||||||++|++.+|.++++.++.|.+++||+|+|.++++++|++|+.+...+| ++++++|+++|+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~----- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK----- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC-----
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE-----
Confidence 58999999999999999999999999999999999999998778999999999998999 999999999997332
Q ss_pred hhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q 010228 117 RDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGI 196 (514)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~ 196 (514)
+.. +| ..++|+++++++|+++++.++.+++.++.++|+|||++|++.||+++++|++
T Consensus 77 --------------------~~~-~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~ 133 (509)
T 2v7y_A 77 --------------------VEI-EG--KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGR 133 (509)
T ss_dssp --------------------EEE-TT--EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred --------------------EEE-CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 111 33 3688999999999999999999999889999999999999999999999999
Q ss_pred HcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 010228 197 IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (514)
Q Consensus 197 ~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~ 276 (514)
.||++.+++++||+|||++|+.... .+.+++|||+||||+|++++++.++.++++++.++..+||.+||+.|.+++.++
T Consensus 134 ~AGl~~~~li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~ 212 (509)
T 2v7y_A 134 IAGLEVERIINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ 212 (509)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred HcCCCeEEEecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654 578999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC---C-ceeEEeeeHHHHHHHHHHHHhhhhcHHHHH
Q 010228 277 IKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD---G-IDFSEPLTRARFEELNNDLFRKTMGPVKKA 352 (514)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 352 (514)
++++++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+ | .++.++|+|++|+++++|+++++.++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~ 292 (509)
T 2v7y_A 213 FKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQA 292 (509)
T ss_dssp HHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHH
T ss_pred HHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888999999999999999999999888888876553 2 456779999999999999999999999999
Q ss_pred HHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccce
Q 010228 353 MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLT 432 (514)
Q Consensus 353 l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s 432 (514)
|+++++...+++.|+|+||+|++|+|+++|++.| +.++....||+++||+|||++|+.+++. .+++++.|++|++
T Consensus 293 L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~Gaa~~a~~l~~~----~~~~~~~dv~p~s 367 (509)
T 2v7y_A 293 LQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLS 367 (509)
T ss_dssp HHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHH-SSCCBCCSCTTTHHHHHHHHHHHHHHTC----CCCCCCCCBCSSE
T ss_pred HHHcCCChhHCcEEEEECCcccChHHHHHHHHHh-CCCcCcCCCchhhhHhhHHHHHHHhcCC----ccCceEEEeeccc
Confidence 9999998889999999999999999999999999 6778888999999999999999998875 3477889999999
Q ss_pred eeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCcccccc
Q 010228 433 LGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLK 508 (514)
Q Consensus 433 ~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (514)
||+++.++.+.++|+||+++|++++..|++..|+|+.+.|.+|||+.. +.+| ..|+.+.++|+|+..++.++
T Consensus 368 lgi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~----~~lg~~~l~~i~~~~~g~~~ 440 (509)
T 2v7y_A 368 LGIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADN----KSLGRFQLTGIPPAPRGVPQ 440 (509)
T ss_dssp EEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGS----EEEEEEEEECCCCCCTTCSC
T ss_pred cceeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccC----cEEEEEEEeCCCCCCCcccE
Confidence 999999999999999999999999999999999999999999999988 6666 46899999999987665543
No 6
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=100.00 E-value=4.5e-65 Score=524.18 Aligned_cols=379 Identities=70% Similarity=1.083 Sum_probs=360.0
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
.+.+||||||||||++|++.+|.++++.++.|++++||+|+|.++++++|..|+.....+|.++++++|+++|++++++.
T Consensus 22 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~ 101 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDAT 101 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHH
T ss_pred cCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCCCEEecHHHHHhhHhChhhhHHHHHHHhCCCCCcHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
++...+.+||.+...+|.+.+.+.. .|....++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|
T Consensus 102 ~~~~~~~~p~~~~~~~g~~~~~v~~-~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a 180 (404)
T 3i33_A 102 VQSDMKHWPFRVVSEGGKPKVQVEY-KGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDA 180 (404)
T ss_dssp HHHHHTTCSSEEEEETTEEEEEEEE-TTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhhCCceEEccCCceEEEEEe-CCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999888999998888 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCC---CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKG---GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVME 271 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~---~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 271 (514)
++.||++.+.+++||+|||++|+..... .+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|.+
T Consensus 181 ~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 260 (404)
T 3i33_A 181 GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVS 260 (404)
T ss_dssp HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999876542 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHH
Q 010228 272 YFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKK 351 (514)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~ 351 (514)
++.++++++++.++..+++.+.+|+.+||++|+.|+...+..+.++.+.++.++...++|++|+++++++++++.+.+.+
T Consensus 261 ~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~~ 340 (404)
T 3i33_A 261 HLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVEK 340 (404)
T ss_dssp HHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
+|+++++...+++.|+|+||+|++|+|++.|++.|++.++..+.||+++||+|||++|+.+++
T Consensus 341 ~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 341 ALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 999999998899999999999999999999999998788888999999999999999998865
No 7
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=100.00 E-value=3.8e-64 Score=515.74 Aligned_cols=378 Identities=70% Similarity=1.106 Sum_probs=361.1
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
+..+||||||||||++|++.+|.++++.++.|++++||+|+|.++++++|++|+.....+|.++++++|+++|++++++.
T Consensus 17 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 96 (394)
T 3qfu_A 17 YGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDRS 96 (394)
T ss_dssp CCSCEEEEECSSEEEEEEECSSCEEECCCTTSCSSEECCEEECSSCEEESHHHHHTGGGCGGGEECCGGGTTTCCTTCHH
T ss_pred CCCEEEEEeCcCcEEEEEEECCeeEEEECCCCCEeeceEEEEeCCcEEecHHHHHhhHhCcccCHHHHHHHhCCCCCcHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
++...+.+||.+.+.++.+.+.+.. ++..+.++|+++++++|+++++.++.+++.++.++|+|||++|++.||+++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ei~a~~l~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a 175 (394)
T 3qfu_A 97 VQKDIKHLPFNVVNKDGKPAVEVSV-KGEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDA 175 (394)
T ss_dssp HHHHHTTCSSEEEEETTEEEEEEES-SSSEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEcCCCceEEEEEe-CCCceEEcHHHHHHHHHHHHHHHHHHhcCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999888999888887 677788999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 274 (514)
++.||++.+.+++||+|||++|+......+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|.+++.
T Consensus 176 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~~l~ 255 (394)
T 3qfu_A 176 GTIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLI 255 (394)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred HHHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999999998877667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHH
Q 010228 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAME 354 (514)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 354 (514)
++++++++.++..+++.+.+|+.+||++|+.|+...+..+.++.+.++.++...++|++|+++++++++++.+.+.++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~i~~~i~~~l~ 335 (394)
T 3qfu_A 256 KAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEKVLQ 335 (394)
T ss_dssp HHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccCCcEEEEEEeccCCceeEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 355 ~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
++++...+++.|+|+||+|++|+|++.|++.|++.++..+.||+++||+|||++|+.++
T Consensus 336 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ls 394 (394)
T 3qfu_A 336 DSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394 (394)
T ss_dssp HHTCCGGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHHC
T ss_pred HcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHhhC
Confidence 99999889999999999999999999999999878888899999999999999998764
No 8
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=100.00 E-value=5.8e-63 Score=509.04 Aligned_cols=380 Identities=30% Similarity=0.508 Sum_probs=341.4
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCH
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (514)
..+.+||||||||||++|++.+|.++++.++.|.+++||+|+|.++++++|..|......+|.++++++|+++|+++++.
T Consensus 11 m~~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~ 90 (409)
T 4gni_A 11 GERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSV 90 (409)
T ss_dssp --CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGC
T ss_pred CCCcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECCCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccch
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred HHHhhhccCCeEEecCCCcceEEEEEeC---CceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHH
Q 010228 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRD---GETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQA 190 (514)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~ 190 (514)
.+... ..++.+...+|...+.+.... +..+.++|+++++++|+++++.++.+++.++.++|+|||++|++.||++
T Consensus 91 ~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~ 168 (409)
T 4gni_A 91 DPTHN--HASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAA 168 (409)
T ss_dssp CCGGG--TTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHH
T ss_pred hhhhh--ccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHH
Confidence 44333 334444566676666665421 3567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeEeechhhHHHHhhhhcc--CCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHH
Q 010228 191 TKDAGIIAGLNVARIINEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQR 268 (514)
Q Consensus 191 l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~--~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~ 268 (514)
+++|++.||++++.+++||+|||++|+... ...+..++|||+||||+|++++++.++.+++++..++..+||.+||+.
T Consensus 169 ~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 248 (409)
T 4gni_A 169 LIAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKV 248 (409)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHH
T ss_pred HHHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHH
Confidence 999999999999999999999999998764 246789999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHhcC--CCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhh
Q 010228 269 VMEYFIKLIKKKHG--KDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTM 346 (514)
Q Consensus 269 l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 346 (514)
|.+++.+++.++++ .+...+++.+.+|+.+||++|+.||...+..+.++.+.++.++...|+|++|+++++|+++++.
T Consensus 249 i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~ 328 (409)
T 4gni_A 249 LIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFN 328 (409)
T ss_dssp HHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHH
Confidence 99999999999988 7778889999999999999999999999999999988899999999999999999999999999
Q ss_pred cHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCC-CC------CCCCChhhHHHhHHHHHHHHhcCC
Q 010228 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGK-EP------NKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~-~v------~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
++|+++|+++++...+++.|+|+||+|++|+|++.|++.|+.. ++ ....||+++||+|||++++.....
T Consensus 329 ~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 329 RLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp HHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999889999999999999999999999999543 23 577899999999999999876543
No 9
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=100.00 E-value=7.7e-61 Score=489.17 Aligned_cols=370 Identities=54% Similarity=0.907 Sum_probs=335.8
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC-CcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD-SERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV 115 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 115 (514)
.+||||||||||++|++.+|.++++.+++|.+++||+|+|.+ ++++||+.|+.....+|+++++++|+++|+.++++.+
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 82 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHH
Confidence 579999999999999999999999999999999999999965 5789999999999999999999999999999988888
Q ss_pred HhhhccCCeEEe-cCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q 010228 116 QRDMKLAPYKIV-NRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDA 194 (514)
Q Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a 194 (514)
+...+.+||.++ +.++...+.+ +| +.++|+++++++|+++++.++.+++.++.++|+|||++|++.||+++++|
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~---~g--~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a 157 (383)
T 1dkg_D 83 QRDVSIMPFKIIAADNGDAWVEV---KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDA 157 (383)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEE---TT--EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHH
T ss_pred HHHhhcCCeEEEEcCCCcEEEEE---CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 888888999987 5666655554 33 47899999999999999999999988889999999999999999999999
Q ss_pred HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEe----CCEEEEEEecCCCCCchHHHHHHHH
Q 010228 195 GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVM 270 (514)
Q Consensus 195 ~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~----~~~~~v~~~~~~~~~GG~~id~~l~ 270 (514)
++.||++.+.+++||+|||++|+......+.+++|||+||||+|+++++.. ++.+++++..++..+||++||+.|.
T Consensus 158 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~ 237 (383)
T 1dkg_D 158 GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLI 237 (383)
T ss_dssp HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHH
T ss_pred HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999999987654467899999999999999999998 5678888888888999999999999
Q ss_pred HHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC---C-ceeEEeeeHHHHHHHHHHHHhhhh
Q 010228 271 EYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD---G-IDFSEPLTRARFEELNNDLFRKTM 346 (514)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~---~-~~~~~~itr~~~e~~~~~~~~~i~ 346 (514)
+++.++++++++.++..+++.+.+|+.+||++|+.|+...+..+.++.+.+ | .++.++|+|++|+++++|+++++.
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~ 317 (383)
T 1dkg_D 238 NYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSI 317 (383)
T ss_dssp HHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHH
Confidence 999999999988888888999999999999999999998888888776543 2 455679999999999999999999
Q ss_pred cHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 347 GPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 347 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
+.+.++|+++++.+.+++.|+|+||+|++|+|++.|++.| +.++..+.+|+++||+||+++|+.+
T Consensus 318 ~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~l 382 (383)
T 1dkg_D 318 ELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVL 382 (383)
T ss_dssp HHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHH-SSCCBCSSCTTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHh-CCCCCCCcChHHHHHHHHHHHHHhh
Confidence 9999999999988889999999999999999999999999 5678888999999999999999765
No 10
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=1.5e-41 Score=341.38 Aligned_cols=310 Identities=26% Similarity=0.368 Sum_probs=234.5
Q ss_pred cEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC--c-EEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCH
Q 010228 37 TVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS--E-RLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDK 113 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 113 (514)
.+||||||||||++++..++ .++ .+||+|+|.++ . .++|++|++....+|.++..
T Consensus 4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------- 61 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------- 61 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE-------------
T ss_pred ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE-------------
Confidence 57999999999999875443 232 26999999865 3 47999998776666654321
Q ss_pred HHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHH
Q 010228 114 EVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKD 193 (514)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~ 193 (514)
..|++ +|. +...+....+++++.+.+..........+|+|||++|++.||+++++
T Consensus 62 -------~~p~~---------------~g~---i~~~~~~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~ 116 (344)
T 1jce_A 62 -------IRPMR---------------DGV---IADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILD 116 (344)
T ss_dssp -------ECCEE---------------TTE---ESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred -------EecCC---------------CCe---eCChHHHHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHH
Confidence 01211 221 12223344444444444433111124789999999999999999999
Q ss_pred HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHH
Q 010228 194 AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYF 273 (514)
Q Consensus 194 a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 273 (514)
|++.||++.+.+++||+|||++|+.... .+.+++|||+||||||+++++.... + ..++..+||++||+.|.+++
T Consensus 117 a~~~aG~~~~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~~----~-~~~~~~lGG~~id~~l~~~l 190 (344)
T 1jce_A 117 AGLEAGASKVFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGSI----V-TWESIRIAGDEMDEAIVQYV 190 (344)
T ss_dssp HHHHTTCSEEEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTEE----E-EEEEESCSHHHHHHHHHHHH
T ss_pred HHHHcCCCeEeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCCE----E-eeCCCCccChhHHHHHHHHH
Confidence 9999999999999999999999976543 4678999999999999999986432 1 23557899999999999998
Q ss_pred HHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCce------EEEEE--ecccCCceeEEeeeHHHHHHHHHHHHhhh
Q 010228 274 IKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQ------VRVEI--ESLFDGIDFSEPLTRARFEELNNDLFRKT 345 (514)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i--~~~~~~~~~~~~itr~~~e~~~~~~~~~i 345 (514)
.+++ +..+. ...||++|+.++.... ..+.+ ..+.+|.+..++|+|++|+++++|.++++
T Consensus 191 ~~~~----~~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i 257 (344)
T 1jce_A 191 RETY----RVAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAI 257 (344)
T ss_dssp HHHH----CEECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHH
T ss_pred HHHh----CcccC---------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHH
Confidence 7654 32222 3789999999986532 23333 34456777889999999999999999999
Q ss_pred hcHHHHHHHHcCCC--ccCC-CeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 346 MGPVKKAMEDAGLE--KNQI-DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 346 ~~~i~~~l~~~~~~--~~~i-~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.+.|.++|++++.. .+.+ +.|+|+||+|++|+|++.|++.| +.++....||+++||+||++++..++
T Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~-~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 258 VESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHH-SSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHH-CCCccccCChHHHHHHHHHHHHhChH
Confidence 99999999986532 2234 68999999999999999999999 56777788999999999999997544
No 11
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.95 E-value=8e-29 Score=251.81 Aligned_cols=321 Identities=17% Similarity=0.181 Sum_probs=205.9
Q ss_pred CCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHH
Q 010228 35 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKE 114 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 114 (514)
+..++|||+|||++++++.+++++++. ..|...+|+.. .+.....+++.+...+|+++++.
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~------------~~~g~i~d~~~~~~~ik~~~~~~----- 72 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGL------------LMEGMVAEPAALAQEIKELLLEA----- 72 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTS------------EETTEESCHHHHHHHHHHHHHHH-----
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCc------------ccCCCcCCHHHHHHHHHHHHHHc-----
Confidence 457899999999999998876654442 12344455521 12333456778888889888541
Q ss_pred HHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCH---------
Q 010228 115 VQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFND--------- 185 (514)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~--------- 185 (514)
..+.... .+.-.+...+.... ....++++++... ++..+++++..+..++++.+|..=..
T Consensus 73 ---~~~~~~v-~~~i~~~~~~~~~~---~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~ 141 (377)
T 2ych_A 73 ---RTRKRYV-VTALSNLAVILRPI---QVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQV 141 (377)
T ss_dssp ---TCCCCEE-EEEECGGGCEEEEE---EEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEE
T ss_pred ---CCCcceE-EEEecCCcEEEEEE---ECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEEeCCCCCCCCccee
Confidence 1111111 11222222221111 1135677776543 34467778888888999988732111
Q ss_pred ---------HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEec
Q 010228 186 ---------AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTN 255 (514)
Q Consensus 186 ---------~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~ 255 (514)
...+.+++|++.||++...++.||.||+++|+... ...+..++|+|+||||||+++++ .+... ..
T Consensus 142 ~v~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~--~g~~~---~~ 216 (377)
T 2ych_A 142 QVMVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR--GDKPL---AV 216 (377)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEE--TTEEE---EE
T ss_pred EEEEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEE--CCEEE---EE
Confidence 12488999999999999999999999999986432 23456789999999999999997 34332 23
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHH
Q 010228 256 GDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFE 335 (514)
Q Consensus 256 ~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e 335 (514)
++..+||.+||+.+.+. ++.+ ..+||++|+.++.............+-.+....+++++++
T Consensus 217 ~~~~~GG~~i~~~i~~~--------~~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~ 277 (377)
T 2ych_A 217 RVLTLSGKDFTEAIARS--------FNLD-----------LLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIY 277 (377)
T ss_dssp EEESCSHHHHHHHHHHH--------TTCC-----------HHHHHHHHHHTC-------------------------CHH
T ss_pred EeeechHHHHHHHHHHH--------hCCC-----------HHHHHHHHhhcccccccccccccccccccccccCCHHHHH
Confidence 45789999999999873 2322 2689999999876432211100001111234578999999
Q ss_pred HHHHHHHhhhhcHHHHHHHHc--CCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCC-------------------
Q 010228 336 ELNNDLFRKTMGPVKKAMEDA--GLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG------------------- 394 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~------------------- 394 (514)
+++++.++++.+.|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+ .++...
T Consensus 278 ~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~-~~v~~~~P~~~v~~~~~~~~~~~l~ 356 (377)
T 2ych_A 278 DAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG-VNLEPVNPWEAVAVDPKRFESEQLQ 356 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT-SEEEECCGGGGSBCCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC-CCeEecCchhhcccCcccCCHHHHH
Confidence 999999999999999999853 4556689999999999999999999999994 433211
Q ss_pred -CChhhHHHhHHHHHHH
Q 010228 395 -VNPDEAVAYGAAVQGG 410 (514)
Q Consensus 395 -~~p~~aVa~GAa~~a~ 410 (514)
.+|..++|.|+++++.
T Consensus 357 ~~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 357 EIGPEFAVALGLALRGV 373 (377)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCC
Confidence 2456788999998773
No 12
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.95 E-value=6.9e-29 Score=248.29 Aligned_cols=227 Identities=16% Similarity=0.141 Sum_probs=165.9
Q ss_pred eCHHHHHHHHHHHHHHHHHhhhCCCCCcEE--EEcCCCCCHHHHHHHHHHHHHc--------C------CceeEeechhh
Q 010228 147 FSPEEISAMILTKMKETAEAFLGKKIKDAV--VTVPAYFNDAQRQATKDAGIIA--------G------LNVARIINEPT 210 (514)
Q Consensus 147 ~~~~~v~~~~L~~l~~~a~~~~~~~~~~vv--iTVPa~~~~~qr~~l~~a~~~a--------G------l~~~~li~Ep~ 210 (514)
+.+++...+++..|++.++.....+ .++| ++||+++++.||+++++++..+ | +..+.+++||.
T Consensus 95 ~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~ 173 (346)
T 2fsj_A 95 LASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGV 173 (346)
T ss_dssp TTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTH
T ss_pred ccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHH
Confidence 3445566666766665542222222 5699 9999999999999999997765 4 35588999999
Q ss_pred HHHHhhhhcc--CCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCC--CCc
Q 010228 211 AAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGK--DIS 286 (514)
Q Consensus 211 Aaal~~~~~~--~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~--~~~ 286 (514)
|||++|.... .++..+++|+|+||||||+++++..++. .+....++.++||+++++.|.+++. ++++. .+.
T Consensus 174 AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~----~~~g~~~~i~ 248 (346)
T 2fsj_A 174 GAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIA----KETGFVVPFD 248 (346)
T ss_dssp HHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHH----HHHCCCCCHH
T ss_pred HHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHH----HHhCCCcCCC
Confidence 9999882211 1234778999999999999999987766 4554457788999999999988754 45555 332
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHH-HHHHHHHHhhhhcHHHHHHHHcCCCccCCCe
Q 010228 287 KDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF-EELNNDLFRKTMGPVKKAMEDAGLEKNQIDE 365 (514)
Q Consensus 287 ~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~-e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 365 (514)
. ..+| ... .+.+ .+. .++++++ +++++++++++.+.+++.|+++ .++++.
T Consensus 249 ~---------~~~e-------~~~--~~~~----~g~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i~~ 299 (346)
T 2fsj_A 249 L---------AQEA-------LSH--PVMF----RQK----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTS 299 (346)
T ss_dssp H---------HHHH-------TTS--CEEE----TTE----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEE
T ss_pred H---------HHHh-------cCC--eEeE----CCc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccE
Confidence 1 1222 111 1222 233 2458999 9999999999999999999875 456899
Q ss_pred EEEEcCCcCcHHHHHHHHhHcCCCCC-CCCCChhhHHHhHHHHHHH
Q 010228 366 IVLVGGSTRIPKVQQLLKDYFDGKEP-NKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 366 ViLvGG~s~~p~l~~~l~~~f~~~~v-~~~~~p~~aVa~GAa~~a~ 410 (514)
|+|+||+|++ +++.+++.|+...+ ....||++|+|+|+..++.
T Consensus 300 IvL~GGga~l--l~~~l~~~~~~~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 300 LIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp EEEESTTHHH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHHH
T ss_pred EEEECCcHHH--HHHHHHHHCcCcEEeccCCCcHHHHHHHHHHHHh
Confidence 9999999998 99999999963322 2267999999999998764
No 13
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.95 E-value=9.4e-27 Score=225.69 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEE
Q 010228 149 PEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNIL 228 (514)
Q Consensus 149 ~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vl 228 (514)
..+....+++++++.++...+.....+++|+|+.|...+|+.++++++.+|++...++.||+|++++++.. ..+
T Consensus 69 d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~------~~~ 142 (272)
T 3h1q_A 69 DYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN------DGI 142 (272)
T ss_dssp THHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS------SEE
T ss_pred cHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC------CEE
Confidence 34566788889988888887777889999999999999999999999999999999999999999988653 259
Q ss_pred EEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcC
Q 010228 229 VFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSS 308 (514)
Q Consensus 229 VvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 308 (514)
|+|+||||||++++. ++... .....++||.++|+.+.+++. .+ ...++++|+.++
T Consensus 143 viDiGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~k~~~~- 197 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETIKKDFS- 197 (272)
T ss_dssp EEEECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHHHHSST-
T ss_pred EEEECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcC-
Confidence 999999999999987 44332 346688999999999988752 11 267889998765
Q ss_pred CceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCC
Q 010228 309 QHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG 388 (514)
Q Consensus 309 ~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~ 388 (514)
+++++++++++.++++.+.+.+.+++.+ +++.|+|+||++++|++++.+++.| +
T Consensus 198 ---------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l-~ 251 (272)
T 3h1q_A 198 ---------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFL-G 251 (272)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHH-S
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHh-C
Confidence 5889999999999999999999988653 4789999999999999999999999 6
Q ss_pred CCCCCCCChhhHHHhHHHHHH
Q 010228 389 KEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 389 ~~v~~~~~p~~aVa~GAa~~a 409 (514)
.++..+.+|++++|+|||++|
T Consensus 252 ~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 252 KEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp SCCBCCSSGGGHHHHHHHTTC
T ss_pred CCccccCChHHHHHHHHHhcC
Confidence 788888999999999999864
No 14
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=99.94 E-value=1.1e-26 Score=239.04 Aligned_cols=226 Identities=17% Similarity=0.112 Sum_probs=164.2
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeEeechhhHHHHh-hhhcc-CCCceeEEEEEcCCCeeEEEEEEEeCCE
Q 010228 172 IKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIA-YGLDK-KGGEKNILVFDLGGGTFDVSILTIDNGV 248 (514)
Q Consensus 172 ~~~vviTVPa~~~~~qr~~l~~a~-~~aGl~~~~li~Ep~Aaal~-~~~~~-~~~~~~vlVvD~GggT~dvsv~~~~~~~ 248 (514)
...+++|+|+.|+..+|++|.+++ +.+|++.+.+++||.||+++ |.... ...+.+.+|+|+|+||||++++. ++.
T Consensus 107 ~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~--~G~ 184 (418)
T 1k8k_A 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA--EGY 184 (418)
T ss_dssp GCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE--TTE
T ss_pred CCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE--CCE
Confidence 467999999999999999999998 88999999999999999987 42100 01122679999999999999986 443
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc-----------------e
Q 010228 249 FEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH-----------------Q 311 (514)
Q Consensus 249 ~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~ 311 (514)
.+....+..++||+++|+.|.+++.++. +...... -...+|++|+.++... .
T Consensus 185 -~~~~~~~~~~lGG~~lt~~l~~~l~~~~---~~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~ 253 (418)
T 1k8k_A 185 -VIGSCIKHIPIAGRDITYFIQQLLRDRE---VGIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI 253 (418)
T ss_dssp -ECGGGCEEESCSHHHHHHHHHHHHHTTC---CCCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTC
T ss_pred -EcccceEEEeCcHHHHHHHHHHHHHhcC---CCCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhcccccccc
Confidence 2222235578999999999999976432 1111111 1256777777765321 1
Q ss_pred EEEEEecccCCceeEEeeeHHHH---HHHHHHHH------hhhhcHHHHHHHHcC--CCccCCCeEEEEcCCcCcHHHHH
Q 010228 312 VRVEIESLFDGIDFSEPLTRARF---EELNNDLF------RKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQ 380 (514)
Q Consensus 312 ~~i~i~~~~~~~~~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~l~~ 380 (514)
..+.++....+.+..+++++++| |.+|+|.+ ..+.+.|.+.|.++. +....++.|+|+||+|++|++++
T Consensus 254 ~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~ 333 (418)
T 1k8k_A 254 KQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGR 333 (418)
T ss_dssp EEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHH
T ss_pred eeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHH
Confidence 35666655556667889999998 56666542 567888888888864 33456788999999999999999
Q ss_pred HHHhHcCC-----------------------CCCCCCCChhhHHHhHHHHHHH
Q 010228 381 LLKDYFDG-----------------------KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 381 ~l~~~f~~-----------------------~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+|++.+.. .++..+.+|..++.+||+++|.
T Consensus 334 rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 334 RLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred HHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 98875521 1233456788999999999985
No 15
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.94 E-value=2.5e-27 Score=242.10 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHH
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDF 265 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~i 265 (514)
...+.+.+|++.||+++..++.||.|||+++... ..+...++++|+||||||+++++ ++.+.. .+..++||++|
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~-~~~~~gv~vvDiGggttdisi~~--~g~~~~---~~~i~~GG~~i 241 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTT-PEKDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHV 241 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCH-HHHHHCEEEEEECSSSEEEEEEE--TTEEEE---EEEESCCHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhcc-ccccCCEEEEEECCCcEEEEEEE--CCEEEE---EEecccHHHHH
Confidence 4567889999999999999999999999988433 22456799999999999999998 554432 34578999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC-----ceEEEEEecccCCceeEEeeeHHHHHHHHHH
Q 010228 266 DQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ-----HQVRVEIESLFDGIDFSEPLTRARFEELNND 340 (514)
Q Consensus 266 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~ 340 (514)
|+.|.+.+. .+ ..+||++|+.++.. .+..+.++... ......+++++++++++|
T Consensus 242 t~dIa~~l~--------~~-----------~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~--~~~~~~is~~~l~~ii~p 300 (419)
T 4a2a_A 242 IKDVSAVLD--------TS-----------FEESERLIITHGNAVYNDLKEEEIQYRGLD--GNTIKTTTAKKLSVIIHA 300 (419)
T ss_dssp HHHHHHHHT--------CC-----------HHHHHHHHHHHCCSCCTTCCCCEEEEECTT--SCSEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHC--------CC-----------HHHHHHHHHHhccCcccCCCCceEEEeecC--CccceEEcHHHHHHHHHH
Confidence 999987631 11 27899999998752 34456666543 245678999999999999
Q ss_pred HHhhhhcHHHHHHHHcCC------CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCC--C---------------CCCh
Q 010228 341 LFRKTMGPVKKAMEDAGL------EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN--K---------------GVNP 397 (514)
Q Consensus 341 ~~~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~--~---------------~~~p 397 (514)
.++++.+.+++.|++++. ....++.|+|+||+|++|++++.+++.| +.++. . ..+|
T Consensus 301 ~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~-g~~vri~~~~~~~p~~~~~~~~~~~~P 379 (419)
T 4a2a_A 301 RLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVF-KSPVRTGCYANSDRPSIINADEVANDP 379 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHH-TSCEEECCGGGSSSCCCBTCHHHHTCG
T ss_pred HHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHH-CCCeEEEecCCCCchhccCcccccCCc
Confidence 999999999999999987 3456899999999999999999999999 44432 1 1489
Q ss_pred hhHHHhHHHHHHHH
Q 010228 398 DEAVAYGAAVQGGI 411 (514)
Q Consensus 398 ~~aVa~GAa~~a~~ 411 (514)
.++++.|.++++..
T Consensus 380 ~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 380 SFAAAFGNVFAVSE 393 (419)
T ss_dssp GGHHHHHTTCC---
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999998854
No 16
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=99.94 E-value=3.1e-26 Score=232.16 Aligned_cols=298 Identities=15% Similarity=0.140 Sum_probs=195.0
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeC----------CcEEEcHHHHHhHhhCCCchhhHhhHh
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD----------SERLIGEAAKNQAAVNPDRTIFDVKRL 105 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~l 105 (514)
...|+||+||++++++++.++.+..+ +||+++... ...++|++|.... .. ..+
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~~--~~~--- 67 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GI--LTL--- 67 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT----TS--EEE---
T ss_pred CceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcC----cc--cce---
Confidence 35799999999999999866544322 255555432 3467888876431 00 000
Q ss_pred hCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCC--CCCcEEEEcCCCC
Q 010228 106 IGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGK--KIKDAVVTVPAYF 183 (514)
Q Consensus 106 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~~vviTVPa~~ 183 (514)
..|+ .+|.... -+....+++++.. +.++. ....+++|+|+.+
T Consensus 68 ---------------~~Pi---------------~~G~i~d---~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~ 111 (375)
T 2fxu_A 68 ---------------KYPI---------------EHGIITN---WDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLN 111 (375)
T ss_dssp ---------------ECSE---------------ETTEECC---HHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTC
T ss_pred ---------------eccc---------------cCCcccC---HHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCC
Confidence 0111 1332222 2344455555542 22332 2356999999999
Q ss_pred CHHHHHHHHHH-HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCch
Q 010228 184 NDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 262 (514)
Q Consensus 184 ~~~qr~~l~~a-~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG 262 (514)
+..+|+++.++ .+.+|++.+.+++||.||+++++. .+.+|+|+|+||||++.+. ++. .+....+..++||
T Consensus 112 ~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~------~~~lVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~~GG 182 (375)
T 2fxu_A 112 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVTHNVPIY--EGY-ALPHAIMRLDLAG 182 (375)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC------SSEEEEEECSSCEEEEEEE--TTE-ECGGGCEEESCCH
T ss_pred cHHHHHHHHHHHHHhcCcceEEEccchheeeeecCC------CeEEEEEcCCCceEEeEeE--CCE-EeccceEEeccCH
Confidence 99999988875 577899999999999999999974 3579999999999998775 553 2222234578999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhc----------------CCceEEEEEecccCCceeE
Q 010228 263 EDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALS----------------SQHQVRVEIESLFDGIDFS 326 (514)
Q Consensus 263 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls----------------~~~~~~i~i~~~~~~~~~~ 326 (514)
+++|+.|.+++..+ .+......+. ..+|++|+.+. ......+.++ ++ ..
T Consensus 183 ~~lt~~l~~~l~~~---~~~~~~~~~~-------~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp---dg--~~ 247 (375)
T 2fxu_A 183 RDLTDYLMKILTER---GYSFVTTAER-------EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP---DG--QV 247 (375)
T ss_dssp HHHHHHHHHHHHHH---TCCCCSHHHH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---TS--CE
T ss_pred HHHHHHHHHHHHhc---CCCCCcHHHH-------HHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC---CC--CE
Confidence 99999999997654 1221111111 33444454442 2223334333 23 24
Q ss_pred EeeeHHHH---HHHHHHH-----HhhhhcHHHHHHHHcC--CCccCCCeEEEEcCCcCcHHHHHHHHhHcC----C---C
Q 010228 327 EPLTRARF---EELNNDL-----FRKTMGPVKKAMEDAG--LEKNQIDEIVLVGGSTRIPKVQQLLKDYFD----G---K 389 (514)
Q Consensus 327 ~~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~----~---~ 389 (514)
+.+++++| |.+++|. ...+.+.|.+.|.++. +....++.|+|+||+|++|+++++|++.+. . .
T Consensus 248 i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v 327 (375)
T 2fxu_A 248 ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKI 327 (375)
T ss_dssp EEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCC
T ss_pred EEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeE
Confidence 67788877 4455553 3557777888887653 223456889999999999999999998773 1 3
Q ss_pred CCCCCCChhhHHHhHHHHHHH
Q 010228 390 EPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 390 ~v~~~~~p~~aVa~GAa~~a~ 410 (514)
++..+.+|.+++++||++++.
T Consensus 328 ~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 328 KIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp CEECCTTTTSHHHHHHHHHHH
T ss_pred EEEcCCCCCccEEcchHHhhC
Confidence 445677999999999999996
No 17
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.89 E-value=3.1e-23 Score=205.57 Aligned_cols=227 Identities=17% Similarity=0.194 Sum_probs=146.7
Q ss_pred eeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCC-CCHH--HH--HHHHHH------------HHHcCCceeEeech
Q 010228 146 VFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAY-FNDA--QR--QATKDA------------GIIAGLNVARIINE 208 (514)
Q Consensus 146 ~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~-~~~~--qr--~~l~~a------------~~~aGl~~~~li~E 208 (514)
.+++..+++.+ +.|++ +.. .+.+ .++++++|.. |... |+ +.+.+- .+.+++..+.+++|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 45677666543 44443 211 1222 3689999987 6531 21 222221 23345677889999
Q ss_pred hhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCC
Q 010228 209 PTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKD 288 (514)
Q Consensus 209 p~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~ 288 (514)
|.||++++... ......++|+|+||||+|+++++ ++...+....++.++||.++|+.+.+++.+ + +.+++.
T Consensus 149 ~~aa~~~~~~~-~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~----~-~~~i~~- 219 (320)
T 2zgy_A 149 SIPAGYEVLQE-LDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSL----A-RTKGSS- 219 (320)
T ss_dssp SHHHHHHHHHH-SCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTC----C-SBGGGH-
T ss_pred cHHHHHhhhcc-ccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHH----c-CCCCCH-
Confidence 99999988632 23467899999999999999998 444445555677899999999999988643 2 222221
Q ss_pred HHHHHHHHHHHHHH-HHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEE
Q 010228 289 KRAIGKLRREAERA-KRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIV 367 (514)
Q Consensus 289 ~~~~~~L~~~~e~~-K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Vi 367 (514)
..+|++ |..- . . .......+ ..-..+++.+++++.++++.+.|.+.+++. .+++.|+
T Consensus 220 --------~~ae~~lk~~~-~-~---~~~~~~i~-----~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vv 277 (320)
T 2zgy_A 220 --------YLADDIIIHRK-D-N---NYLKQRIN-----DENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVM 277 (320)
T ss_dssp --------HHHHHHHHTTT-C-H---HHHHHHSS-----SSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEE
T ss_pred --------HHHHHHHHHhh-h-h---hcccceec-----CchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEE
Confidence 234444 3320 0 0 00000000 011345666677777777777777776652 4689999
Q ss_pred EEcCCcCcHHHHHHHHhHcCCC--CCCCCCChhhHHHhHHHHHH
Q 010228 368 LVGGSTRIPKVQQLLKDYFDGK--EPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 368 LvGG~s~~p~l~~~l~~~f~~~--~v~~~~~p~~aVa~GAa~~a 409 (514)
|+||+|++ +++.+++.|+.. ++....+|++|+|+||++++
T Consensus 278 l~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 278 VIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp EESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred EECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 99999987 999999999532 46778899999999999875
No 18
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=99.84 E-value=9.7e-22 Score=200.14 Aligned_cols=214 Identities=17% Similarity=0.146 Sum_probs=90.1
Q ss_pred CcEEEEcCCCCCHHHHHHHHHH-HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEE
Q 010228 173 KDAVVTVPAYFNDAQRQATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 251 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr~~l~~a-~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v 251 (514)
..+++|+|+.++..+|+++.++ .+.+|++.+.++.||.||+++++. .+.+|+|+|+|||+++.+. ++.. +
T Consensus 105 ~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~------~~~lVVDiG~g~T~v~pv~--~G~~-~ 175 (394)
T 1k8k_B 105 CKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL------LTGVVVDSGDGVTHICPVY--EGFS-L 175 (394)
T ss_dssp -------------------------------------------------------CCEEEECSSCEEEECEE--TTEE-C
T ss_pred CcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC------ceEEEEEcCCCceEeeeeE--CCEE-c
Confidence 4699999999999999988885 578899999999999999999875 3559999999999998776 3432 1
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCC----------------ceEEEE
Q 010228 252 LSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQ----------------HQVRVE 315 (514)
Q Consensus 252 ~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------------~~~~i~ 315 (514)
.......++||+++|+.|.+++.++ .+......+. ..+|++|+.+... ....+.
T Consensus 176 ~~~~~~~~~GG~~lt~~l~~~l~~~---~~~~~~~~~~-------~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~ 245 (394)
T 1k8k_B 176 PHLTRRLDIAGRDITRYLIKLLLLR---GYAFNHSADF-------ETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYT 245 (394)
T ss_dssp STTCEEESCCHHHHHHHHHHHHHHT---TCCCCTTTTH-------HHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred ccceEEeeccHHHHHHHHHHHHHhc---CCCCCcHHHH-------HHHHHHHHhheeEecCHHHHHHhhccCCcCceEEE
Confidence 1112335899999999999997643 1222111122 3455555554321 112222
Q ss_pred EecccCCceeEEeeeHHHH---HHHHHHH-----HhhhhcHHHHHHHHcCC--CccCCCeEEEEcCCcCcHHHHHHHHhH
Q 010228 316 IESLFDGIDFSEPLTRARF---EELNNDL-----FRKTMGPVKKAMEDAGL--EKNQIDEIVLVGGSTRIPKVQQLLKDY 385 (514)
Q Consensus 316 i~~~~~~~~~~~~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~l~~~l~~~ 385 (514)
+ .+|. .+++++++| |.+++|. ...+.+.|.+.|.++.. .....+.|+|+||+|.+|++.++|++.
T Consensus 246 l---pdg~--~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~e 320 (394)
T 1k8k_B 246 L---PDGR--IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERE 320 (394)
T ss_dssp C---TTSC--EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHH
T ss_pred C---CCCC--EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHH
Confidence 2 2332 456777776 3344442 24567788888888643 234457899999999999999998887
Q ss_pred cCC------------------CCCCCCCChhhHHHhHHHHHHH
Q 010228 386 FDG------------------KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 386 f~~------------------~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+.. .++..+.+|..++.+|+++++.
T Consensus 321 l~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 321 LKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HHHHHHHHTCSSCCCTTCCCCC---------------------
T ss_pred HHHHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 621 1233366788999999999886
No 19
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=99.78 E-value=7.6e-18 Score=163.20 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=121.4
Q ss_pred cCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 010228 198 AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLI 277 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~ 277 (514)
++......|+||+|+++++..... ....++|+|||+++++++. .++.++.....+....|+.++++.+.+++...+
T Consensus 69 a~~~~~~~Vne~~aha~a~~~~~~---~~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~ 144 (276)
T 4ehu_A 69 NYSDADKQISELSCHARGVNFIIP---ETRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDV 144 (276)
T ss_dssp GCCSCSEECCHHHHHHHHHHHHST---TCCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCG
T ss_pred HhhCCCcccchHHHHHHHHHHhCC---CCCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccCh
Confidence 566678899999999998866543 2347899999999999885 466777777888888999999888888764222
Q ss_pred HHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEE--------eeeHHHHHHHHHHHHhhhhcHH
Q 010228 278 KKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSE--------PLTRARFEELNNDLFRKTMGPV 349 (514)
Q Consensus 278 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~--------~itr~~~e~~~~~~~~~i~~~i 349 (514)
++.. .+ .+......+ +. ..+..+ .-.....++++..+.+.+.+.+
T Consensus 145 ~~~~------------~~---------~~~a~~~~~--i~----~~~~~f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l 197 (276)
T 4ehu_A 145 SELG------------SI---------SMNSQNEVS--IS----STCTVFAESEVISHLSENAKIEDIVAGIHTSVAKRV 197 (276)
T ss_dssp GGHH------------HH---------HTTCSSCCC--CC----CCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhH------------HH---------HhcCCCCCC--cC----CccchhhhhHHHHhhhccccHHHHHHHHHHHHHHHH
Confidence 1100 00 000000000 00 000000 0001123556666666666655
Q ss_pred HHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 350 KKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 350 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.....+. ..++.|+|+||.+++|.|++.+++.| +.++..+.+|++++|+|||++|....
T Consensus 198 ~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~-g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 198 SSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREI-NTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHH-TSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhc----ccCCeEEEecCccchHHHHHHHHHHH-CCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 5554443 34678999999999999999999999 78899999999999999999996543
No 20
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.75 E-value=3.6e-18 Score=170.61 Aligned_cols=203 Identities=17% Similarity=0.216 Sum_probs=134.5
Q ss_pred CcEEEEcCCCCCHHHH-HHHHHHHHHcCC------------ceeEeechhhHHHHhhhhccCC-----CceeEEEEEcCC
Q 010228 173 KDAVVTVPAYFNDAQR-QATKDAGIIAGL------------NVARIINEPTAAAIAYGLDKKG-----GEKNILVFDLGG 234 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr-~~l~~a~~~aGl------------~~~~li~Ep~Aaal~~~~~~~~-----~~~~vlVvD~Gg 234 (514)
..+++.+|..+...+| +++++++...+- ..+.+++||.||++++...... ....++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3689999999887776 588888875532 4678899999999998654321 367899999999
Q ss_pred CeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEE
Q 010228 235 GTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRV 314 (514)
Q Consensus 235 gT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 314 (514)
||||++++. ++.+. ....+....||..+++++.+++.+++. +.++. . ...++ ... .
T Consensus 194 gTtd~~v~~--~~~~~-~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~-------g~~--~ 249 (355)
T 3js6_A 194 GTTIIDTYQ--NMKRV-EEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEK-------GLE--Y 249 (355)
T ss_dssp SCEEEEEEE--TTEEC-GGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHS-------CCC---
T ss_pred CcEEEEEEc--CCEEc-cccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhc-------CCc--c
Confidence 999999983 44421 112334679999999999999765431 22222 1 11111 000 0
Q ss_pred EEecccCCce--eEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHH--HHHHHHhHcCCCC
Q 010228 315 EIESLFDGID--FSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPK--VQQLLKDYFDGKE 390 (514)
Q Consensus 315 ~i~~~~~~~~--~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~--l~~~l~~~f~~~~ 390 (514)
. ..+.+ ....+ .+.+++.+++.+++|.+.+++.+.+ ++.++.|+|+||++.++. |++.+++.||..
T Consensus 250 ~----~~~~~~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~- 319 (355)
T 3js6_A 250 K----QCKLNQKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA- 319 (355)
T ss_dssp ----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC-
T ss_pred c----cccccccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC-
Confidence 0 00000 01112 2345666666777777666666643 456789999999999998 999999999532
Q ss_pred CCCCCChhhHHHhHHHHHHHHhc
Q 010228 391 PNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 391 v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.||.+|+|+|+..++..+.
T Consensus 320 ----~~p~~anA~G~~~~~~~~~ 338 (355)
T 3js6_A 320 ----DDSQFSNVRGYEKLGELLK 338 (355)
T ss_dssp ----SSGGGHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHH
Confidence 7999999999999987664
No 21
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.69 E-value=4.2e-18 Score=168.72 Aligned_cols=202 Identities=17% Similarity=0.227 Sum_probs=138.5
Q ss_pred CcEEEEcCCCCCH--HHHHHHHHHHHHc--------C------CceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCe
Q 010228 173 KDAVVTVPAYFND--AQRQATKDAGIIA--------G------LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGT 236 (514)
Q Consensus 173 ~~vviTVPa~~~~--~qr~~l~~a~~~a--------G------l~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT 236 (514)
..+++.+|..+.. .+|+.+++..+.- | +..+.+++||.+|.+.+. ....+..++|+|+||||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~--~~~~~~~v~vvDiGggT 183 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ--ENFKNKNVAVIDFGGLN 183 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC--CCCTTCEEEEEEECSSC
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc--hhhccCCEEEEEeCCCc
Confidence 3689999987764 3677777766521 1 234677999998887652 22357889999999999
Q ss_pred eEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHH-hcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEE
Q 010228 237 FDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK-KHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVE 315 (514)
Q Consensus 237 ~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~-~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~ 315 (514)
||++++. ++.. +....+...+||..+++.+.+++ ++ +++..+.. ..+|++|+. .. ..
T Consensus 184 td~~v~~--~g~~-~~~~~~~~~~G~~~~~~~i~~~l----~~~~~g~~i~~---------~~~e~i~~~--g~--~~-- 241 (329)
T 4apw_A 184 MGFSLYR--NCVV-NPSERFIEEHGVKDLIIRVGDAL----TDLNNGNLITN---------EQAESALNN--GY--MK-- 241 (329)
T ss_dssp EEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHTSS----SSCSSCSCTTS---------BTTTTCSSS--CS--SC--
T ss_pred EEEEEEE--CCEE-eeccccchhhHHHHHHHHHHHHH----HhhccCCCCCH---------HHHHHHHhc--CC--cc--
Confidence 9999998 4443 22223456799999999999874 34 56655543 233343332 11 00
Q ss_pred EecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCC
Q 010228 316 IESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGV 395 (514)
Q Consensus 316 i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~ 395 (514)
.+.+. ..+..+++++.+++.++.|.+.+++. +..++.++.|+|+||++.+ +.+.+++.|+ .++....
T Consensus 242 -----~g~~~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~~-~~v~v~~ 308 (329)
T 4apw_A 242 -----KGGEI-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTYP-NNSIITN 308 (329)
T ss_dssp -----EECTT-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHST-TCEECCS
T ss_pred -----cCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHcC-CCCEecC
Confidence 01111 13456777777777777777666655 3455558999999999997 6799999995 4567788
Q ss_pred ChhhHHHhHHHHHHHH
Q 010228 396 NPDEAVAYGAAVQGGI 411 (514)
Q Consensus 396 ~p~~aVa~GAa~~a~~ 411 (514)
||.+|+|+|+..++..
T Consensus 309 ~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 309 NSQWTTCEGLYKVAVA 324 (329)
T ss_dssp SGGGHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhh
Confidence 9999999999988754
No 22
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=4.6e-16 Score=160.42 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCC----cEEEcHHHHHhHhhCCCchhhHhhHhhCCCCC
Q 010228 36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS----ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFE 111 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 111 (514)
...|+||+||.++++.+..++.+..+ +||+|+.... ..++|+++.... +
T Consensus 23 ~~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r---------------- 75 (498)
T 3qb0_A 23 VSAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---R---------------- 75 (498)
T ss_dssp BSCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---C----------------
T ss_pred CCeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---c----------------
Confidence 35699999999999998866644333 4999987532 467777531110 0
Q ss_pred CHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCC--CCC-cEEEEcCCCCCHHHH
Q 010228 112 DKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGK--KIK-DAVVTVPAYFNDAQR 188 (514)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~-~vviTVPa~~~~~qr 188 (514)
+...+.-.+.+|. +..-+....+++++... .++. ... .+++|.|.......|
T Consensus 76 -------------------~~l~l~~Pi~~Gv---I~dwd~~E~iw~~~f~~---~L~v~p~~~~pvlltep~~n~~~~R 130 (498)
T 3qb0_A 76 -------------------KDYELKPIIENGL---VIDWDTAQEQWQWALQN---ELYLNSNSGIPALLTEPVWNSTENR 130 (498)
T ss_dssp -------------------TTEEEEESEETTE---ESCHHHHHHHHHHHHHH---TSCCSCCTTCCEEEEECTTCCHHHH
T ss_pred -------------------CceEEeccCcCCE---EccHHHHHHHHHHHHHh---hhCCCcccCCceEEEeCCCCcHHHH
Confidence 0001111112442 33344555666665532 2322 223 699999998889999
Q ss_pred HHHHHH-HHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHH
Q 010228 189 QATKDA-GIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQ 267 (514)
Q Consensus 189 ~~l~~a-~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 267 (514)
+.|.++ ++..|++.+.++.+|.+|+++++.. +-||+|+|+|+|+++.+. ++.. +........+||+++|+
T Consensus 131 e~~~eilFE~f~vpav~l~~~~vlalya~G~~------tglVVDiG~g~T~vvPI~--~G~~-l~~ai~rl~vgG~~lt~ 201 (498)
T 3qb0_A 131 KKSLEVLLEGMQFEACYLAPTSTCVSFAAGRP------NCLVVDIGHDTCSVSPIV--DGMT-LSKSTRRNFIAGKFINH 201 (498)
T ss_dssp HHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCS------SEEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCSHHHHHH
T ss_pred HHHHHHHHhhcCCCeEeecchHHHHHHHcCCC------eEEEEEcCCCcEEEEEEe--CCEE-ccccceeccccHHHHHH
Confidence 999886 5789999999999999999988753 249999999999999986 3321 11111225799999999
Q ss_pred HHHHHHHH
Q 010228 268 RVMEYFIK 275 (514)
Q Consensus 268 ~l~~~l~~ 275 (514)
.|.++|.+
T Consensus 202 ~L~~lL~~ 209 (498)
T 3qb0_A 202 LIKKALEP 209 (498)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHh
Confidence 99998753
No 23
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.66 E-value=1e-16 Score=163.65 Aligned_cols=242 Identities=18% Similarity=0.109 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCC--CCCcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeEeechhhHHHHhhhhccC--CCc
Q 010228 150 EEISAMILTKMKETAEAFLGK--KIKDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKK--GGE 224 (514)
Q Consensus 150 ~~v~~~~L~~l~~~a~~~~~~--~~~~vviTVPa~~~~~qr~~l~~a~-~~aGl~~~~li~Ep~Aaal~~~~~~~--~~~ 224 (514)
-+....+++++.. +.++. ....+++|.|...+...|+.|.+.+ +..|++.+.++.+|.+|+++.+.... ...
T Consensus 102 wd~~e~iw~~~~~---~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~ 178 (427)
T 3dwl_A 102 WDHMERFWQQSLF---KYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178 (427)
T ss_dssp HHHHHHHHHHHHH---TTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCC
T ss_pred HHHHHHHHHHHHh---HhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcccccCCC
Confidence 3444555555443 22332 2357999999999999999998876 78999999999999999998874321 113
Q ss_pred eeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHH
Q 010228 225 KNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKR 304 (514)
Q Consensus 225 ~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 304 (514)
.+-||+|+|+|+|+++.+. ++.. +.......++||+++|+.|.+++.++... ... .+.+|.+|+
T Consensus 179 ~tglVVDiG~g~T~v~PV~--~G~~-l~~~~~rl~~gG~~lt~~L~~lL~~~~~~----~~~---------~~~~~~IKe 242 (427)
T 3dwl_A 179 LTGTVVDSGDGVTHIIPVA--EGYV-IGSSIKTMPLAGRDVTYFVQSLLRDRNEP----DSS---------LKTAERIKE 242 (427)
T ss_dssp CCEEEEEESSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHTTC---------------------CHHHHHHHH
T ss_pred ceEEEEECCCCceEEEEEE--CCEE-ehhhheeccccHHHHHHHHHHHHHHcCCC----chh---------HHHHHHHHH
Confidence 4579999999999999985 3321 11111224799999999999886543221 111 144566666
Q ss_pred HhcCCce-----------EEEEEec--c--cCCceeEEeeeHHHH---HHHHHHH------HhhhhcHHHHHHHHcCCC-
Q 010228 305 ALSSQHQ-----------VRVEIES--L--FDGIDFSEPLTRARF---EELNNDL------FRKTMGPVKKAMEDAGLE- 359 (514)
Q Consensus 305 ~Ls~~~~-----------~~i~i~~--~--~~~~~~~~~itr~~~---e~~~~~~------~~~i~~~i~~~l~~~~~~- 359 (514)
.+..... ....+.. + .+|....+++..++| |-+++|- ...|.+.+.+.|.++..+
T Consensus 243 ~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~~dl 322 (427)
T 3dwl_A 243 ECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDV 322 (427)
T ss_dssp HHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSCHHH
T ss_pred hcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCCHHH
Confidence 6542210 0000110 1 234434567777776 4455552 235667777777764321
Q ss_pred -ccCCCeEEEEcCCcCcHHHHHHHHhHc------------------C-C--CCCCCCCChhhHHHhHHHHHHH
Q 010228 360 -KNQIDEIVLVGGSTRIPKVQQLLKDYF------------------D-G--KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 360 -~~~i~~ViLvGG~s~~p~l~~~l~~~f------------------~-~--~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+.-.++|+|+||+|.+|++.++|++.+ | . .++..+.++.+++-+|++++|.
T Consensus 323 r~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 323 RKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred HHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 223467999999999999999988755 1 1 2334456778999999999985
No 24
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=99.47 E-value=1.3e-13 Score=119.52 Aligned_cols=81 Identities=49% Similarity=0.614 Sum_probs=73.5
Q ss_pred EEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCc
Q 010228 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKL 503 (514)
Q Consensus 425 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
+.|++|+|+|+++.+|.|.++||||+++|++++..|++..|+|+.+.|.+|||++. +.+| ..||.|.++|+|++.
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn----~~LG~f~l~gipp~p 77 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDN----HRLGTFELSGIPPAP 77 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGS----EEEEEEEEECCCCCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccC----ceeEEEEEeCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999998 7666 479999999999998
Q ss_pred cccccc
Q 010228 504 KSHLKL 509 (514)
Q Consensus 504 ~~~~~~ 509 (514)
++.+++
T Consensus 78 ~G~~~I 83 (152)
T 3dob_A 78 RGVPQI 83 (152)
T ss_dssp TTCCCE
T ss_pred CCCceE
Confidence 887654
No 25
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=99.47 E-value=1.3e-13 Score=119.33 Aligned_cols=81 Identities=48% Similarity=0.636 Sum_probs=73.5
Q ss_pred EEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCc
Q 010228 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKL 503 (514)
Q Consensus 425 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
+.|++|+|+|+++.+|.|.++||||+++|++++..|++..|+|+.+.|.+|||++. +.+| ..||.|.++|+|++.
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn----~~LG~f~l~gipp~p 77 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSN----KLLGQFSLVGIPPAP 77 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGS----EEEEEEEEECCCCCC
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccC----cEEEEEEEeCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999998 7766 479999999999998
Q ss_pred cccccc
Q 010228 504 KSHLKL 509 (514)
Q Consensus 504 ~~~~~~ 509 (514)
++.+++
T Consensus 78 ~G~~~I 83 (151)
T 3dqg_A 78 RGVPQV 83 (151)
T ss_dssp TTCSCE
T ss_pred CCCcEE
Confidence 887654
No 26
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=99.45 E-value=1.5e-13 Score=119.21 Aligned_cols=81 Identities=48% Similarity=0.579 Sum_probs=74.1
Q ss_pred EEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCc
Q 010228 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKL 503 (514)
Q Consensus 425 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
+.|++|+|+|+++.+|.|.++||||+++|++++..|++..|+|+.+.|.||||++. +.+| ..||.|.++|+|++.
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn----~~LG~f~l~gipp~p 77 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDN----NLLGKFELTGIPPAP 77 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGS----EEEEEEEECCCCCCC
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccC----cEEEEEEEeCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999998 7666 479999999999998
Q ss_pred cccccc
Q 010228 504 KSHLKL 509 (514)
Q Consensus 504 ~~~~~~ 509 (514)
++.+++
T Consensus 78 ~G~~~I 83 (152)
T 3h0x_A 78 RGVPQI 83 (152)
T ss_dssp TTCSCE
T ss_pred CCCceE
Confidence 887654
No 27
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=99.44 E-value=1.4e-11 Score=132.03 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=82.7
Q ss_pred HHHHHHHHH-hhhCCCC-----CcEEEEcCCCCCHHHHHHHHH-HHHHcCCceeEeechhhHHHHhhhhccCCCceeEEE
Q 010228 157 LTKMKETAE-AFLGKKI-----KDAVVTVPAYFNDAQRQATKD-AGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILV 229 (514)
Q Consensus 157 L~~l~~~a~-~~~~~~~-----~~vviTVPa~~~~~qr~~l~~-a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlV 229 (514)
+..|++++- +.++... ..+++|.|..++...|+.|.+ ..+..|++.+.++.++.+|+++++.. +-+|
T Consensus 177 ~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~------tglV 250 (593)
T 4fo0_A 177 IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS------STCI 250 (593)
T ss_dssp HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS------EEEE
T ss_pred HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC------ceEE
Confidence 455666654 4455432 359999999999999998877 56778999999999999999998753 5699
Q ss_pred EEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 010228 230 FDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275 (514)
Q Consensus 230 vD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 275 (514)
||+|.+.|+++.+.- |.. +........+||.++++.|.++|..
T Consensus 251 VDiG~~~T~v~PV~d--G~~-l~~~~~rl~~GG~~lt~~L~~lL~~ 293 (593)
T 4fo0_A 251 VDVGDQKTSVCCVED--GVS-HRNTRLCLAYGGSDVSRCFYWLMQR 293 (593)
T ss_dssp EEECSSCEEEEEEES--SCB-CGGGCEEESCCHHHHHHHHHHHHHH
T ss_pred EEeCCCceeeeeeEC--CEE-ehhheEEecccHHHHHHHHHHHHHh
Confidence 999999999998873 321 1111122479999999999988753
No 28
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=99.43 E-value=2.1e-13 Score=125.67 Aligned_cols=82 Identities=49% Similarity=0.651 Sum_probs=75.5
Q ss_pred EEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcC
Q 010228 424 LLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLK 502 (514)
Q Consensus 424 ~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 502 (514)
++.|++|+|+|+++.+|.|.++||||+++|++++..|++..|||+.+.|.||||++. +.+| ..||.|.++|+|++
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn----~~Lg~f~l~gipp~ 77 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADN----KSLGQFNLDGINPA 77 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGS----EEEEEEEEECCCCC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccC----CEEEEEEEeCCCCC
Confidence 467899999999999999999999999999999999999999999999999999998 7776 47999999999999
Q ss_pred ccccccc
Q 010228 503 LKSHLKL 509 (514)
Q Consensus 503 ~~~~~~~ 509 (514)
.++.+++
T Consensus 78 p~G~~~I 84 (219)
T 4e81_A 78 PRGMPQI 84 (219)
T ss_dssp STTCSCE
T ss_pred CCCCceE
Confidence 8887654
No 29
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=120.36 Aligned_cols=84 Identities=48% Similarity=0.631 Sum_probs=73.5
Q ss_pred ceEEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCC
Q 010228 422 DILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEP 500 (514)
Q Consensus 422 ~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~ 500 (514)
.+.+.|++|+|+|+++.+|.|.++||||+++|++++..|++..|+|+.+.|.||||++. +.+| ..|+.|.++|+|
T Consensus 19 ~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn----~~LG~f~l~gip 94 (182)
T 3n8e_A 19 YFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDN----KLLGQFTLIGIP 94 (182)
T ss_dssp -----CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGS----EEEEEEEECCCC
T ss_pred CEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccC----ceEEEEEEcCCC
Confidence 57889999999999999999999999999999999999999999999999999999998 7666 479999999999
Q ss_pred cCccccccc
Q 010228 501 LKLKSHLKL 509 (514)
Q Consensus 501 ~~~~~~~~~ 509 (514)
+..++.+++
T Consensus 95 p~p~G~~~I 103 (182)
T 3n8e_A 95 PAPRGVPQI 103 (182)
T ss_dssp CCCTTCSCE
T ss_pred CCCCCCeeE
Confidence 998887654
No 30
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=99.39 E-value=1.9e-13 Score=116.14 Aligned_cols=86 Identities=43% Similarity=0.589 Sum_probs=72.0
Q ss_pred CcceEEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecC
Q 010228 420 TKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLG 498 (514)
Q Consensus 420 ~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~ 498 (514)
.+++.+.|++|+++|+++.++.|.++|+||+++|++++..|++..|+|+.+.|.+|||++. +++| ..|+.+.++|
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n----~~Lg~f~l~g 89 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADN----KSLGQFNLDG 89 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSS----EEEEEEECCC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccC----cEEEEEEEeC
Confidence 4578899999999999999999999999999999999999999999999999999999988 6666 3689999999
Q ss_pred CCcCccccccc
Q 010228 499 EPLKLKSHLKL 509 (514)
Q Consensus 499 ~~~~~~~~~~~ 509 (514)
+|+..++.+++
T Consensus 90 ipp~p~G~~~I 100 (135)
T 1q5l_A 90 INPAPRGMPQI 100 (135)
T ss_dssp CCSCCSSSCCE
T ss_pred CCCCCCceeEE
Confidence 99987776543
No 31
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=99.38 E-value=2.9e-13 Score=136.38 Aligned_cols=197 Identities=22% Similarity=0.214 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHc-CC--ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCch
Q 010228 186 AQRQATKDAGIIA-GL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGG 262 (514)
Q Consensus 186 ~qr~~l~~a~~~a-Gl--~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG 262 (514)
.+-+.+.+|.+.+ |+ ++-. .||.||++++ +..++.+-.+.++|+||||||++++.-....+ ....+.||
T Consensus 368 ~~m~NI~~cVer~~gL~veV~g--~ep~AAglaa-LTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~-----a~~ip~gG 439 (610)
T 2d0o_A 368 LQMAMIAREIEQKLNIDVQIGG--AEAEAAILGA-LTTPGTTRPLAILDLGAGSTDASIINPKGDII-----ATHLAGAG 439 (610)
T ss_dssp CCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHH-TTSTTCCSSEEEEEECSSEEEEEEECTTCCEE-----EEEEECSH
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhh-cCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccch
Confidence 3567888899999 99 6666 9999999988 55555677899999999999999998554442 33367899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc----------eEEEEE--eccc----CC----
Q 010228 263 EDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------QVRVEI--ESLF----DG---- 322 (514)
Q Consensus 263 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~----~~---- 322 (514)
+.++..+..-|. .+- +..||+.|+ ..... ...+.+ +.+. .-
T Consensus 440 ~~VT~DIA~~Lg--------t~d----------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~ 500 (610)
T 2d0o_A 440 DMVTMIIARELG--------LED----------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVV 500 (610)
T ss_dssp HHHHHHHHHHHT--------CCC----------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEE
T ss_pred HHHHHHHHHHhC--------CCC----------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecc
Confidence 999999987642 210 178899998 53221 112333 2111 10
Q ss_pred -ceeEEeeeHHH--HHHHHHHHHhhhhcH--HHHHHHHcCC-----CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCC-
Q 010228 323 -IDFSEPLTRAR--FEELNNDLFRKTMGP--VKKAMEDAGL-----EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP- 391 (514)
Q Consensus 323 -~~~~~~itr~~--~e~~~~~~~~~i~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v- 391 (514)
.+.-..| +.+ +|+ ++-+-+++.+. +...|+..+. +..+|..|+|+||+|+++.+.++.++.|..-++
T Consensus 501 ~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VR 578 (610)
T 2d0o_A 501 KADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLV 578 (610)
T ss_dssp CSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCE
T ss_pred cccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeE
Confidence 0111134 445 565 54444443333 2223555332 235679999999999999999999999953133
Q ss_pred ------CCCCChhhHHHhHHHHHHHH
Q 010228 392 ------NKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 392 ------~~~~~p~~aVa~GAa~~a~~ 411 (514)
.....|.+|+|.|.+++.+.
T Consensus 579 iGrP~~~gv~gP~fAtAvGLlly~~~ 604 (610)
T 2d0o_A 579 AGRGNIRGSEGPRNAVATGLILSWHK 604 (610)
T ss_dssp EEECCGGGTSTTSCHHHHHHHHHHHH
T ss_pred EecCCccccCCCcHHHHHHHHHHHhh
Confidence 22458999999999988753
No 32
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=99.36 E-value=4.9e-13 Score=135.24 Aligned_cols=195 Identities=21% Similarity=0.187 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHc-CC--ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchH
Q 010228 187 QRQATKDAGIIA-GL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (514)
Q Consensus 187 qr~~l~~a~~~a-Gl--~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~ 263 (514)
+-+.+.+|.+.+ |+ ++-. .||.||++++ +..++.+-.+.++|+||||||++++.-....+ ....+.||+
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laa-LTedE~elGvaiIDmGgGTTd~sVf~~g~lv~-----a~~ip~gG~ 442 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGA-LTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT-----AVHLAGAGN 442 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHH-TTSTTCCSSEEEEEECSSEEEEEEECSSSCEE-----EEEEECCHH
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhh-cCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchH
Confidence 345678888888 99 6555 9999999988 55555677899999999999999998555443 333678999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCc----------eEEEEE--ecc----cCC-----
Q 010228 264 DFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQH----------QVRVEI--ESL----FDG----- 322 (514)
Q Consensus 264 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~----~~~----- 322 (514)
.++..+..-|. .+- +..||+.|+ ..... ...+.+ +.+ +.-
T Consensus 443 ~VT~DIA~~Lg--------~~d----------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R~~~~~ 503 (607)
T 1nbw_A 443 MVSLLIKTELG--------LED----------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIK 503 (607)
T ss_dssp HHHHHHHHHHT--------CSC----------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEE
T ss_pred HHHHHHHHHhC--------CCC----------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeeccc
Confidence 99999987642 210 178899998 53221 112333 211 111
Q ss_pred ceeEEeeeHHH--HHHHHHHHHhhhhcH--HHHHHHHcCCC-----ccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCC--
Q 010228 323 IDFSEPLTRAR--FEELNNDLFRKTMGP--VKKAMEDAGLE-----KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP-- 391 (514)
Q Consensus 323 ~~~~~~itr~~--~e~~~~~~~~~i~~~--i~~~l~~~~~~-----~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v-- 391 (514)
.+.-..| +.+ +|+ ++-+-+++.+. +...|+..+.. ..+|..|+|+||+|+++.+.++.++.|..-++
T Consensus 504 ~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VRi 581 (607)
T 1nbw_A 504 EGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVA 581 (607)
T ss_dssp TTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEE
T ss_pred ccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeEE
Confidence 0001133 444 555 44444443333 33447776653 23568999999999999999999999943133
Q ss_pred -----CCCCChhhHHHhHHHHHHH
Q 010228 392 -----NKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 392 -----~~~~~p~~aVa~GAa~~a~ 410 (514)
.....|.+|+|.|.+++.+
T Consensus 582 GrP~~~g~~gP~fAtAvGLlly~~ 605 (607)
T 1nbw_A 582 GQGNIRGTEGPRNAVATGLLLAGQ 605 (607)
T ss_dssp EECCGGGTSCSCCHHHHHHHHHHH
T ss_pred ecCCccccCCchHHHHHHHHHhhh
Confidence 2245899999999998753
No 33
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=99.36 E-value=1.7e-12 Score=113.12 Aligned_cols=81 Identities=52% Similarity=0.638 Sum_probs=72.4
Q ss_pred EEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCc
Q 010228 425 LLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKL 503 (514)
Q Consensus 425 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 503 (514)
+.|++|++||+++.+|.|.+||+||+++|++++..|++..|+|+.+.|.||||++. +.+| ..|+.+.++|+|+..
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n----~~lg~~~l~gipp~p 77 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDN----HKLGNFDVTGIPPAP 77 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGS----EEEEEEEECCCCCCC
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccC----CEeEEEEEECCCCCC
Confidence 46899999999999999999999999999999999999999999999999999988 6666 368999999999987
Q ss_pred cccccc
Q 010228 504 KSHLKL 509 (514)
Q Consensus 504 ~~~~~~ 509 (514)
++.+++
T Consensus 78 ~G~~~I 83 (152)
T 2op6_A 78 RGVPQI 83 (152)
T ss_dssp TTCSCE
T ss_pred CCCceE
Confidence 776543
No 34
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=99.23 E-value=2e-11 Score=113.58 Aligned_cols=78 Identities=44% Similarity=0.682 Sum_probs=71.1
Q ss_pred ecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccc
Q 010228 427 DVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKS 505 (514)
Q Consensus 427 ~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
|++|+++|+++.+|.|.+|||+|+++|++++.+|++..|+|+.+.|.||||++. +.+| ..|+.|.++|+|+..++
T Consensus 2 Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n----~~Lg~f~l~gi~~~p~G 77 (227)
T 1u00_A 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC----RSLARFALRGIPALPAG 77 (227)
T ss_dssp CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGS----EEEEEEEECCCCCCSTT
T ss_pred CcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCC----CEEEEEEEeCCCCCCCC
Confidence 789999999999999999999999999999999999999999999999999988 7666 47899999999988776
Q ss_pred ccc
Q 010228 506 HLK 508 (514)
Q Consensus 506 ~~~ 508 (514)
.++
T Consensus 78 ~~~ 80 (227)
T 1u00_A 78 GAH 80 (227)
T ss_dssp CSC
T ss_pred ceE
Confidence 653
No 35
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=99.02 E-value=9.8e-09 Score=98.33 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=98.8
Q ss_pred eeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhc
Q 010228 202 VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 281 (514)
Q Consensus 202 ~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~ 281 (514)
...+++|++|.+.+......+ .+ .++|+||+++.+..+ .++.+...........|.-.+-+.+.+. +
T Consensus 76 ~~~~v~Ei~ah~~ga~~~~~~-~~--~vidiGGqd~k~i~~--~~g~v~~~~mn~~ca~GtG~~le~~a~~----l---- 142 (270)
T 1hux_A 76 ADKQMSELSCHAMGASFIWPN-VH--TVIDIGGQDVKVIHV--ENGTMTNFQMNDKCAAGTGRFLDVMANI----L---- 142 (270)
T ss_dssp CSEEECHHHHHHHHHHHHCTT-CC--EEEEEETTEEEEEEE--ETTEEEEEEEESSCCTTSHHHHHHHHHH----H----
T ss_pred CCCCcccHHHHHHHHHHhCCC-CC--EEEEECCCceEEEEE--eCCceeeeccccccchhhHHHHHHHHHH----h----
Confidence 346799999999665333221 12 589999999988777 4665433333333333443333333332 2
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHH----------HHHHHHHHhhhhcHHHH
Q 010228 282 GKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF----------EELNNDLFRKTMGPVKK 351 (514)
Q Consensus 282 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~----------e~~~~~~~~~i~~~i~~ 351 (514)
+.++.+ .++.... .... .. .... . ..+.+.++ ++++..+++.+...+.+
T Consensus 143 g~~~~e-----------l~~la~~--~~~p--~~----~~~~-c-~vfa~s~v~~l~~~g~~~~di~~av~e~Va~~i~~ 201 (270)
T 1hux_A 143 EVKVSD-----------LAELGAK--STKR--VA----ISST-C-TVFAESEVISQLSKGTDKIDIIAGIHRSVASRVIG 201 (270)
T ss_dssp TCCTTT-----------HHHHHTT--CCSC--CC----CCCC-S-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHH-----------HHHHHhh--CCCC--CC----cccc-c-chhHhHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 333321 1111110 0000 00 0000 0 01122222 44555555555555555
Q ss_pred HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHh
Q 010228 352 AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 352 ~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 412 (514)
.++..+. .+.|+++||.+++|.+++.+++.+ +.++..+.+|+.+.|+|||+.+...
T Consensus 202 ~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~l-g~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 202 LANRVGI----VKDVVMTGGVAQNYGVRGALEEGL-GVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHTTCC----CSSEEEESGGGGCHHHHHHHHHHH-CSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHhcCCC----CCeEEEeCccccCHHHHHHHHHHH-CCCeEeCCCcchHhHHHHHHHHHHh
Confidence 5554221 367999999999999999999999 6788888888889999999999754
No 36
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=98.43 E-value=7.5e-06 Score=78.15 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=41.0
Q ss_pred CCeEEEEcC-CcCcHHHHHHHHhHc--CCCCCCCCCChhhHHHhHHHHHH
Q 010228 363 IDEIVLVGG-STRIPKVQQLLKDYF--DGKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 363 i~~ViLvGG-~s~~p~l~~~l~~~f--~~~~v~~~~~p~~aVa~GAa~~a 409 (514)
++.|+++|| .+..|.+++.+++.+ .+.++..+.+|+.+.|.|||+.+
T Consensus 237 i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGAaL~~ 286 (287)
T 2ews_A 237 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286 (287)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHHHHhC
Confidence 557999999 899999999999974 36678888999999999999864
No 37
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=98.19 E-value=6e-06 Score=86.23 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=87.2
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEE
Q 010228 173 KDAVVTVPAYFNDAQRQATKDAG-IIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEV 251 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr~~l~~a~-~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v 251 (514)
..+++|.|..++...|+.|.+++ +..|++.+.++.+|.+|+++++. ..+-+|+|+|+|+|+++.+. +|.. +
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl-----~ttGLVVDiG~g~T~VvPV~--eG~v-l 293 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI-----STSTCVVNIGAAETRIACVD--EGTV-L 293 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC-----SSCEEEEEECSSCEEEEEEE--TTEE-C
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC-----CCceEEEcCCCceEEEEEEe--CCEE-E
Confidence 57999999999999999998866 56899999999999999998863 23569999999999999885 3421 1
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHHHHhcC---CCCcCCHHHHHHHHHHHHHHHHHhcCC
Q 010228 252 LSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG---KDISKDKRAIGKLRREAERAKRALSSQ 309 (514)
Q Consensus 252 ~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~---~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 309 (514)
........+||+++|+.|.++|.++ .+. ..+.. .. =...++.+|+.+...
T Consensus 294 ~~ai~rL~iGG~dLT~yL~kLL~~r---gypy~~~~f~t-~~----e~eiVrdIKEk~CyV 346 (655)
T 4am6_A 294 EHSAITLDYGGDDITRLFALFLLQS---DFPLQDWKIDS-KH----GWLLAERLKKNFTTF 346 (655)
T ss_dssp GGGCEEESCCHHHHHHHHHHHHHHT---TCSCCSCCTTS-HH----HHHHHHHHHHHHCCC
T ss_pred hhheeeecchHHHHHHHHHHHHHHc---CCCccccCCCC-cc----hHHHHHHHHHheEEE
Confidence 1111225799999999999987543 121 11211 11 125577788887544
No 38
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=97.45 E-value=0.0019 Score=62.68 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHH
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (514)
+..+.+.++-+..|++..-+-.|.+|...+.+..... .....+|+|+|||+|.+++++ ++.+.. ..+.++|+..
T Consensus 98 N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~~~---~~Sl~~G~v~ 172 (315)
T 1t6c_A 98 NAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKVRE---VISLPIGIVN 172 (315)
T ss_dssp THHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEEEE---EEEECCCHHH
T ss_pred CHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCceee---EEEEeccHHH
Confidence 4456666677788998765556666655544332221 255689999999999999976 444321 2236899998
Q ss_pred HHHHH
Q 010228 265 FDQRV 269 (514)
Q Consensus 265 id~~l 269 (514)
+.+.+
T Consensus 173 l~e~~ 177 (315)
T 1t6c_A 173 LTETF 177 (315)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87775
No 39
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=97.22 E-value=0.0013 Score=64.51 Aligned_cols=71 Identities=18% Similarity=0.075 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhhhcHHHHHH----HHcCCCccCCCeEEEEcC-CcCcHHHHHHHHhHcC-----CCCCCCCCChhhHHHh
Q 010228 334 FEELNNDLFRKTMGPVKKAM----EDAGLEKNQIDEIVLVGG-STRIPKVQQLLKDYFD-----GKEPNKGVNPDEAVAY 403 (514)
Q Consensus 334 ~e~~~~~~~~~i~~~i~~~l----~~~~~~~~~i~~ViLvGG-~s~~p~l~~~l~~~f~-----~~~v~~~~~p~~aVa~ 403 (514)
-|++...++..+.+.|.... ++.+ ++.|+++|| .+..|.+++.|++.+. +.++..+.+|+.+-|.
T Consensus 278 ~eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAl 352 (360)
T 2i7n_A 278 KEDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAV 352 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHH
Confidence 35666666666666655442 3333 446999999 8999999999999862 4567778899999999
Q ss_pred HHHHHH
Q 010228 404 GAAVQG 409 (514)
Q Consensus 404 GAa~~a 409 (514)
||++.+
T Consensus 353 GAaL~~ 358 (360)
T 2i7n_A 353 GALLEL 358 (360)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 40
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=97.03 E-value=0.041 Score=53.43 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred HcCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCCeeEEEEEE
Q 010228 197 IAGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 197 ~aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
..|++ +.+.++..|+|++..... ....++++++-+|.| +-..++.
T Consensus 95 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 95 RVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE
Confidence 34776 789999999998754322 223466788888887 4455543
No 41
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=96.97 E-value=0.06 Score=52.41 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCC--------CCCCCCChhhHHHhHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK--------EPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~--------~v~~~~~p~~aVa~GAa~~a 409 (514)
+++.|+|.||.+..+.+.+.+++.+... ++....-.+.+.++|||..+
T Consensus 269 ~p~~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 269 DPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp CCSEEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTT
T ss_pred CCCEEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHH
Confidence 4578999999998887878777766311 12223345678999999765
No 42
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=96.91 E-value=0.16 Score=49.52 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=44.7
Q ss_pred hhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCC---ChhhHHHhHHHHHHHHhcC
Q 010228 343 RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGV---NPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 343 ~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~a~~~~~ 414 (514)
+.+.+.+.+.++..+ ++.|+|+||.+....+++.+.+.+. +.++..+. --|.+++.|++.+.....+
T Consensus 235 ~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 235 AMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 334444455555443 5689999999999999999988763 33443332 2367899999876654443
No 43
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=96.88 E-value=0.2 Score=48.64 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=36.2
Q ss_pred CCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCCC---hhhHHHhHHHHHHHH
Q 010228 363 IDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN---PDEAVAYGAAVQGGI 411 (514)
Q Consensus 363 i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~~---p~~aVa~GAa~~a~~ 411 (514)
++.|+|+||.+....+++.+.+.+. +.++..+.. -|.+++.|++.+...
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~ 298 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMY 298 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHH
Confidence 5689999999999999999998762 344444432 256888898876543
No 44
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=96.85 E-value=0.039 Score=53.55 Aligned_cols=49 Identities=22% Similarity=0.107 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCcCc-HHHHHHHHhHcC---------CCCCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGSTRI-PKVQQLLKDYFD---------GKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s~~-p~l~~~l~~~f~---------~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+++.|+|.||.++. +.+.+.+++.+. ..++......+.+.++|||.++.
T Consensus 260 dP~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 260 DLNNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp CCCEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 45789999999886 666666555441 22344455567899999998763
No 45
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=96.78 E-value=0.39 Score=45.76 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+++.|+|.||.+..+.+.+.+++.++..++..+. .+.+.+.||+..+..
T Consensus 239 ~p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 239 GTNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp TCSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 4678999999987788888888887544455444 557899999988754
No 46
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=96.74 E-value=0.0033 Score=61.71 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCceeEeechhhHHHHhh-hhccC--C--CceeEEEEEcCCCeeEEEEEEE--eC--CEEEEEEecCC
Q 010228 187 QRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKK--G--GEKNILVFDLGGGTFDVSILTI--DN--GVFEVLSTNGD 257 (514)
Q Consensus 187 qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~-~~~~~--~--~~~~vlVvD~GggT~dvsv~~~--~~--~~~~v~~~~~~ 257 (514)
..+.+.++-+..|++. .+|+..+=|.+.| +.... . .....+++|+|||+|+++++.- .. +.+ . ....
T Consensus 104 ~~~fl~~v~~~tGi~i-eVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~--~-~~~S 179 (343)
T 3cer_A 104 REEFEDEIERILGVRP-EVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQV--Q-GAFS 179 (343)
T ss_dssp HHHHHHHHHHHHSSCC-EECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSC--S-EEEE
T ss_pred HHHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCccccc--c-eeEE
Confidence 4556666777789885 5666655555544 32211 1 2356899999999999999864 22 110 0 1223
Q ss_pred CCCchHHHHHHH
Q 010228 258 THLGGEDFDQRV 269 (514)
Q Consensus 258 ~~~GG~~id~~l 269 (514)
.++|+..+.+.+
T Consensus 180 lplG~v~lt~~~ 191 (343)
T 3cer_A 180 MNIGSVRMTERH 191 (343)
T ss_dssp ESCCHHHHHHHT
T ss_pred EehhHHHHHHHh
Confidence 689999887775
No 47
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=96.68 E-value=0.21 Score=47.80 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCc-Cc-HHHHHHHHhHcCC-------CCCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGST-RI-PKVQQLLKDYFDG-------KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s-~~-p~l~~~l~~~f~~-------~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+++.|+|.||.+ .. +.+.+.+++.+.. .++....-.+.+.++|||..+.
T Consensus 237 ~p~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 237 DPGVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp CCSEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 457899999888 54 5566655554421 1123333456799999998874
No 48
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=96.64 E-value=0.56 Score=45.66 Aligned_cols=60 Identities=7% Similarity=-0.018 Sum_probs=40.0
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc-C--CceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCe
Q 010228 171 KIKDAVVTVPAYFNDAQRQATKDAGIIA-G--LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGT 236 (514)
Q Consensus 171 ~~~~vviTVPa~~~~~qr~~l~~a~~~a-G--l~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT 236 (514)
++..+.+++|...+......+++..+.. + ...+.+.++..|+++++ . ++..+++-+|-|.
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~-----~~~~v~v~~GTGi 132 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T-----PDGGVVLISGTGS 132 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C-----SSCEEEEEESSSE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C-----CCCcEEEEEcCCc
Confidence 4677899999988876555666655543 3 13578999999999884 2 1334455556554
No 49
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=96.50 E-value=0.21 Score=47.55 Aligned_cols=50 Identities=22% Similarity=0.124 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC-----------CCCCCCCCChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD-----------GKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~-----------~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+++.|+|.||.+..+.+.+.+++.+. ..++......+.+.++||+..+..
T Consensus 227 ~p~~IvlgG~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 227 DPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 35689999999877777766665441 122233334567899999988754
No 50
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=96.38 E-value=0.095 Score=50.19 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=36.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCC-----CCCCCCChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK-----EPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~-----~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+++.|+|.||.+..+.+.+.+++.+... ++....-.+.+.++||+.++..
T Consensus 237 ~p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 237 DPTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CCSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 4678999999998888888888877421 1223334567999999988754
No 51
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=96.38 E-value=0.016 Score=56.19 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhcc--CCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchH
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGE 263 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~--~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~ 263 (514)
+..+.+.++-+..|++..-+=.|-+|...+.+... .......+|+|+|||+|.+++++ ++.... ..+.++|..
T Consensus 90 N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~v 164 (315)
T 3mdq_A 90 NKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGN--KNEILW---KQSFEIGGQ 164 (315)
T ss_dssp THHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEEC--SSCEEE---EEEESCCHH
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEE--CCeEee---eEEEechhh
Confidence 34556677777789986444444455433333222 11246789999999999999987 332211 223689988
Q ss_pred HHHHHH
Q 010228 264 DFDQRV 269 (514)
Q Consensus 264 ~id~~l 269 (514)
.+.+.+
T Consensus 165 rl~e~f 170 (315)
T 3mdq_A 165 RLIDRF 170 (315)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 776654
No 52
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=96.22 E-value=0.0048 Score=63.80 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
++++.+++.+.-.++..++........++.|.++||.++++.+.+.+.+.+ +.++..+..++.+.|+|||+.|+.-.+
T Consensus 360 ~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~~~~e~~~alGAA~lA~~~~g 437 (484)
T 2itm_A 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHH-CCCEEEESCTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHh-CCeEEeCCCCCcccHHHHHHHHHHHcC
Confidence 344555555555455444433222335678999999999999999999999 788877655555689999999976554
No 53
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=96.17 E-value=0.12 Score=50.00 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCeEEEEcCCcC-cHHHHHHHHhHcCC---------CCCCCCCChhhHHHhHHHHHHHH
Q 010228 363 IDEIVLVGGSTR-IPKVQQLLKDYFDG---------KEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 363 i~~ViLvGG~s~-~p~l~~~l~~~f~~---------~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
++.|+|.||.+. .+.+.+.+++.+.. .++......+.+.++||+..+..
T Consensus 263 p~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~~ 321 (326)
T 2qm1_A 263 PDSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLALQ 321 (326)
T ss_dssp CSEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGGG
T ss_pred CCEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHHH
Confidence 568999999986 57777777665521 12333334567899999988754
No 54
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.16 E-value=0.0063 Score=64.04 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=61.6
Q ss_pred eeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHH
Q 010228 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 329 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 408 (514)
-++.++-.+++.+++.+.-.++..++........++.|.++||.++++.+.+.+.+.| +.+|..+ ...++.|+|||+.
T Consensus 409 ~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGAA~l 486 (554)
T 3l0q_A 409 TTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANAT-GCAMLLP-EESEAMLLGSAMM 486 (554)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHH-CCEEEEE-SCSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhh-CCeEEec-CCCcchHHHHHHH
Confidence 4677775445566666655555544432222345789999999999999999999999 6777654 3467999999999
Q ss_pred HHHhcCC
Q 010228 409 GGILSGE 415 (514)
Q Consensus 409 a~~~~~~ 415 (514)
|+.-.+.
T Consensus 487 A~~a~G~ 493 (554)
T 3l0q_A 487 GTVAAGV 493 (554)
T ss_dssp HHHHTTS
T ss_pred HHHHcCC
Confidence 9876554
No 55
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=96.16 E-value=0.0083 Score=62.86 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
..+++.+++.+.-.++..++..+.....++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVF-DAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHH-TSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHh-CCceEec-CCCCchHHHHHHHHHHHhC
Confidence 5566666777766667777765544456789999999999999999999999 6777654 4577999999999976443
No 56
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=96.05 E-value=0.009 Score=61.98 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=57.9
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
.++++.+++.+.-.++..++...... .++.|.++||.++++.+.+.+.+.+ +.++..+ .+.++.|+|||+.|+.-.+
T Consensus 367 ~~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 367 EHLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADIL-NRKVIRP-VVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhc-CCeEEEc-CCCcchHHHHHHHHHHHhC
Confidence 34455566666666666666543333 6788999999999999999999999 6777654 3456999999999976554
No 57
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=96.05 E-value=0.011 Score=61.45 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=58.8
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCC-CCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEP-NKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v-~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.++++.+++.+.-.++..++.... .. ++.|.++||.++++.+.+.+.+.+ +.+| ..+ .+.++.|+|||+.|+.-.
T Consensus 377 ~~l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~-~~~e~~alGaA~lA~~a~ 452 (511)
T 3hz6_A 377 AQILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNL-NVSLLVKP-DAHLHPLRGLAALAAVEL 452 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHH-TCEEEECC-CGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHH-CCeeEEec-CCCCchHHHHHHHHHHHh
Confidence 344556666666666666655433 44 889999999999999999999999 7777 554 588999999999998765
Q ss_pred CC
Q 010228 414 GE 415 (514)
Q Consensus 414 ~~ 415 (514)
+.
T Consensus 453 G~ 454 (511)
T 3hz6_A 453 EW 454 (511)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 58
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=95.91 E-value=0.0096 Score=61.86 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
++++.+++.+.-.++..++...-....++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+.
T Consensus 367 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G~ 444 (504)
T 3ll3_A 367 EMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIF-NVPIVTM-KEQQSGTLAAMFLARQALGL 444 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhh-CCeEEec-CCCCchhHHHHHHHHHHcCc
Confidence 344555555555444444432111235789999999999999999999999 6777654 45679999999999865553
No 59
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=95.91 E-value=0.0071 Score=63.00 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhcHHHHH---HHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 335 EELNNDLFRKTMGPVKKA---MEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~---l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
.++++.+++.+.-.++.. |++.+ ..++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.
T Consensus 397 ~~l~RAvlEgia~~~r~~l~~l~~~g---~~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~ 471 (515)
T 3i8b_A 397 ENLARAFVEGLLCSQRDCLELIRSLG---ASITRILLIGGGAKSEAIRTLAPSIL-GMDVTRP-ATDEYVAIGAARQAAW 471 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---CCCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC---CCCCEEEEECchhcCHHHHHHHHHHh-CCceEec-CCcccHHHHHHHHHHH
Confidence 344445555554444443 44433 34789999999999999999999999 6777654 4567899999999986
Q ss_pred hcCC
Q 010228 412 LSGE 415 (514)
Q Consensus 412 ~~~~ 415 (514)
-.+.
T Consensus 472 a~G~ 475 (515)
T 3i8b_A 472 VLSG 475 (515)
T ss_dssp HHHC
T ss_pred HcCC
Confidence 5543
No 60
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=95.89 E-value=0.088 Score=54.56 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCceeEeechhhHHHHhh-hhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHH
Q 010228 187 QRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (514)
Q Consensus 187 qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~-~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (514)
..+.+.++-+..|++. .+|+..+=|.+.| +..... ..+..+|+|+|||+|.+++.+ ++.... ....++|...
T Consensus 98 ~~~fl~~i~~~tG~~i-~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~~---~~Sl~lG~vr 171 (513)
T 1u6z_A 98 ATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPIL---VESRRMGCVS 171 (513)
T ss_dssp HHHHHHHHTTTCSSCE-EECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEEE---EEEESCCHHH
T ss_pred HHHHHHHHHHHHCCCE-EEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeeeE---EEEEeccHHH
Confidence 3455566666679875 5666665555544 322211 122689999999999999875 444322 2236899998
Q ss_pred HHHHH
Q 010228 265 FDQRV 269 (514)
Q Consensus 265 id~~l 269 (514)
+.+.+
T Consensus 172 lte~f 176 (513)
T 1u6z_A 172 FAQLY 176 (513)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87776
No 61
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=95.47 E-value=0.02 Score=59.28 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhcHHHHHHHHcC-CCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 335 EELNNDLFRKTMGPVKKAMEDAG-LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 335 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
.++++.+++.+.-.+...++... .....++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.
T Consensus 370 ~~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~ 447 (495)
T 2dpn_A 370 AHLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLL-GVPVAVP-EVTETTALGAALMAGVGA 447 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHh-CCeeEec-CCcccHHHHHHHHHHhhc
Confidence 33445555555555555554431 12235678999999999999999999999 6777654 455699999999997654
Q ss_pred C
Q 010228 414 G 414 (514)
Q Consensus 414 ~ 414 (514)
+
T Consensus 448 G 448 (495)
T 2dpn_A 448 G 448 (495)
T ss_dssp T
T ss_pred C
Confidence 4
No 62
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=95.46 E-value=0.012 Score=61.10 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=54.3
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCC-CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
++++.+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+
T Consensus 377 ~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 377 HFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIV-NTSVERP-EIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHh-CCceEec-CCCcchHHHHHHHHHHHhC
Confidence 33444555554444443332110 1234789999999999999999999999 6777554 4667999999999987655
Q ss_pred CC
Q 010228 415 EG 416 (514)
Q Consensus 415 ~~ 416 (514)
..
T Consensus 455 ~~ 456 (501)
T 3g25_A 455 FW 456 (501)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 63
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=95.43 E-value=0.47 Score=45.85 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=27.9
Q ss_pred cCCceeEeechhhHHHHhhhhccC-CCceeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (514)
.+++ +.+.++..|+|++...... ...++++++-+|.| +-..++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 4665 7899999999987532221 13456777788877 334444
No 64
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=95.42 E-value=0.64 Score=46.01 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=28.0
Q ss_pred cCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~ 242 (514)
.|++ +.+.++..|+|++........ ++++++-+|.| +-..++
T Consensus 188 ~~~p-V~v~NDanaaalaE~~~g~~~-~~~v~l~~GtG-iG~giv 229 (380)
T 2hoe_A 188 YGIE-VWVENDADMGAVGEKWYTKRD-DSFAWILTGKG-IGAGII 229 (380)
T ss_dssp HCSE-EEEEEHHHHHHHHHHHHTTCC-SCEEEEEESSS-CEEEEE
T ss_pred hCCC-EEEechHHHHHHHHHHhCCCC-CcEEEEEeCCc-eEEEEE
Confidence 4765 789999999998754332222 67788888877 334444
No 65
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=95.40 E-value=0.011 Score=61.40 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHHhhhhcHHHH---HHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228 337 LNNDLFRKTMGPVKK---AMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILS 413 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 413 (514)
+++.+++.+.-.++. .|++.+. .++.|.++||.++++.+.+.+.+.+ +.+|..+.. .++.|+|||+.|+.-.
T Consensus 375 l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~~~-~e~~alGaA~lA~~a~ 449 (508)
T 3ifr_A 375 LWRALLEAVALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVL-QRPVQLLAN-PLGSAVGAAWVAAIGG 449 (508)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEEEC-CSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEEeCCcccCHHHHHHHHHHh-CCeEEecCC-CCchHHHHHHHHHHHh
Confidence 344444444433333 3344343 4788999999999999999999999 777766543 4688999999998765
Q ss_pred CC
Q 010228 414 GE 415 (514)
Q Consensus 414 ~~ 415 (514)
+.
T Consensus 450 G~ 451 (508)
T 3ifr_A 450 GD 451 (508)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 66
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=95.37 E-value=0.013 Score=61.93 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=55.3
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCc-CcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGST-RIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
++++.+++.+.-.++..++........++.|.++||.+ +++.+.+.+.+.| +.+|..+ .+.++.|+|||+.|+.-.+
T Consensus 413 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~ks~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G 490 (572)
T 3jvp_A 413 EIYRALLEATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFADVT-NREIKVA-ASKQTPALGAAMFASVAAG 490 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEESSHHHHCHHHHHHHHHHH-TSCEEEB-CCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCEEEEEcCchhhCHHHHHHHHHHH-CCeeEec-CCCccHHHHHHHHHHHhcC
Confidence 34555555555444444443221234578899999999 9999999999999 6777554 4578999999999987655
No 67
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=95.36 E-value=0.0097 Score=62.06 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
.++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+.
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~e~~alGAA~lA~~a~G~ 476 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLL-DAPVDRP-VILETTALGVAWLAGSRAGV 476 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCCCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCccccCHHHHHHHHHHh-CCeEEec-CCCccHHHHHHHHHHHHcCC
Confidence 4788999999999999999999999 6777654 45679999999999876554
No 68
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=95.30 E-value=0.27 Score=49.21 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=28.4
Q ss_pred cCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~GggT~dvsv~ 242 (514)
.|++ +.+.++..|+|++..... ....++++++-+|.| +-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 4766 688999999998754322 123456788888877 444544
No 69
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=95.29 E-value=0.014 Score=60.56 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
.++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+.
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G~ 454 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADIL-DIDVQRA-ANLETTALGAAYLAGLAVGF 454 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSEEEEC-SSSCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEecccccCHHHHHHHHHHh-CCeEEec-CCCcchhHHHHHHHHHHhCc
Confidence 4788999999999999999999999 6777554 46679999999999876554
No 70
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=95.24 E-value=0.012 Score=61.31 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHhhhhcHHHHHHHHcCC-CccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGL-EKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGE 415 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~ 415 (514)
+++.+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+.
T Consensus 375 l~RAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~a~G~ 452 (510)
T 2p3r_A 375 IIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVGF 452 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCchhcCHHHHHHHHHHh-CCceEec-CCCCcHHHHHHHHHHHHhCc
Confidence 3444444444444443332110 1234788999999999999999999999 6777554 45679999999999876554
No 71
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=95.18 E-value=0.025 Score=59.05 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCC
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEG 416 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~ 416 (514)
.++.|.++||+++++.+.+.+.+.+ +.+|..+ ...++.|+|||+.|+.-.+..
T Consensus 402 ~~~~i~v~GGgaks~~~~Qi~ADvl-g~pV~~~-~~~E~~alGAA~lA~~a~G~~ 454 (526)
T 3ezw_A 402 RLHALRVDGGAVANNFLMQFQSDIL-GTRVERP-EVREVTALGAAYLAGLAVGFW 454 (526)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEEE-SCCCHHHHHHHHHHHHHTTSS
T ss_pred CCCEEEEECchhhCHHHHHHHHHHH-CCEEEeC-CCCchHHHHHHHHHHHHhCCC
Confidence 4789999999999999999999999 7777654 456789999999998766543
No 72
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=95.13 E-value=2.7 Score=43.65 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=90.0
Q ss_pred CCCcEEEEc-CCCCCHHHHHHH--HHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCC
Q 010228 171 KIKDAVVTV-PAYFNDAQRQAT--KDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG 247 (514)
Q Consensus 171 ~~~~vviTV-Pa~~~~~qr~~l--~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~ 247 (514)
++..+++|. |..|+....-.. +..+...+.+.+. |+.-.|-+++.......... +++-+-||++.+..+. ++
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p--~~l~vsGg~t~~~~~~--~~ 146 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP--LTLYVSGGNTQVIAYV--SK 146 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC--EEEEECSSCEEEEEEE--TT
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC--cEEEEcCCCcEEEEEe--CC
Confidence 456666665 776664432221 2234455766544 44444444443332222222 5555667777765444 68
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEE
Q 010228 248 VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSE 327 (514)
Q Consensus 248 ~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~ 327 (514)
.++++....+. --|+.||..- +..+...+.-+ .|...|.+.+ . .+.++....+.++++
T Consensus 147 ~~~~lg~t~d~-s~G~~~D~~a---------~~lgl~~~gg~----~ie~lA~~g~------~--~~~~p~~~~~~~~sf 204 (540)
T 3en9_A 147 KYRVFGETLDI-AVGNCLDQFA---------RYVNLPHPGGP----YIEELARKGK------K--LVDLPYTVKGMDIAF 204 (540)
T ss_dssp EEEEEEEBSSS-CHHHHHHHHH---------HHTTCCSSCHH----HHHHHHHTCC------C--CCCCCCCEETTEECC
T ss_pred ceEEEeeccch-HhHHHHHHHH---------HHcCCCCCCHH----HHHHHHHcCC------c--cCcCCCCCCCcceec
Confidence 89998876643 4466666432 22344433211 1211121110 0 011111111222221
Q ss_pred e-------------eeHHHHHHHHH-HHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 010228 328 P-------------LTRARFEELNN-DLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 328 ~-------------itr~~~e~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
. .+.+++-..++ .+++.+.+.+.++++..+ ++.|+|+||.+....|++.+++.+.
T Consensus 205 sgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~~ 273 (540)
T 3en9_A 205 SGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMCE 273 (540)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHHH
Confidence 0 01222221111 133334444555555544 4689999999999999999998763
No 73
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=95.08 E-value=1 Score=43.25 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCCeEEEEcCCcCc-----HHHHHHHHhHcCC------CCCCCCCChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRI-----PKVQQLLKDYFDG------KEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~-----p~l~~~l~~~f~~------~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+++.|+|-||.++. +.+++.+++.+.. .++....-.+.+.++|||..+..
T Consensus 239 dP~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~ 299 (310)
T 3htv_A 239 DPDAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQ 299 (310)
T ss_dssp CCSEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHH
Confidence 46789999998865 4677777776521 11222233467899999988743
No 74
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=95.02 E-value=0.018 Score=59.86 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 414 (514)
.++.|.++||.++++.+.+.+.+.+ +.+|..+ .+.++.|+|||+.|+.-.+
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQL-GVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred CcceEEEeCCcccCHHHHHHHHHHh-CCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 4678999999999999999999999 6777654 4567999999999986555
No 75
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=94.84 E-value=0.023 Score=59.01 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=51.7
Q ss_pred HHHHHHhhhhcHHHHHHHH----cCCCccCC-CeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 337 LNNDLFRKTMGPVKKAMED----AGLEKNQI-DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~----~~~~~~~i-~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
+++.+++.+.-.++..++. .+. .+ +.|.++||.++++.+.+.+.+.+ +.+|... .+.++.|+|||+.|+.
T Consensus 380 l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~~i~~~GG~a~s~~~~Q~~Adv~-g~pV~~~-~~~e~~alGaA~la~~ 454 (503)
T 2w40_A 380 IVRALLEGIAFQLNEIVDSLTSDMGI---EMLHVLRCDGGMTKNKPFMQFNSDII-NTKIEVS-KYKEVTSLGAAVLAGL 454 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---SCCSCEEEESGGGGCHHHHHHHHHHH-TSCEEEE-SCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CccceEEEeCccccCHHHHHHHHHHH-CCeEEec-CCCcchHHHHHHHHHH
Confidence 3444444444444443332 232 35 77999999999999999999999 6777654 4556899999999976
Q ss_pred hcC
Q 010228 412 LSG 414 (514)
Q Consensus 412 ~~~ 414 (514)
-.+
T Consensus 455 ~~G 457 (503)
T 2w40_A 455 EVK 457 (503)
T ss_dssp HTT
T ss_pred HhC
Confidence 554
No 76
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=94.50 E-value=0.031 Score=57.74 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=39.2
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
.++.|.++||.++++.+.+.+.+.+ +.+|.... .++.|.||++.|..
T Consensus 393 ~~~~i~~~GGgaks~~~~Qi~ADvl-g~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 393 DFSQLHIVGGGCQNTLLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCSEEEEESGGGGCHHHHHHHHHHH-TSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCEEEEeCChhhhHHHHHHHHHHH-CCeeecCC--ccHhHHHHHHHHHH
Confidence 4678999999999999999999999 67776543 58899999766643
No 77
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=94.49 E-value=0.46 Score=47.93 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=28.3
Q ss_pred cCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~GggT~dvsv~ 242 (514)
.|++ +.+.++..|+|++-.... ....++++++-+|.| +-..++
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 251 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIV 251 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEE
Confidence 4766 689999999998754322 123456777888877 344444
No 78
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=94.08 E-value=0.75 Score=43.62 Aligned_cols=66 Identities=9% Similarity=-0.092 Sum_probs=41.1
Q ss_pred HHHHHhhhhcHHHHHHHHcCCCcc-CCCeEEEEcCCcCc--HHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 338 NNDLFRKTMGPVKKAMEDAGLEKN-QIDEIVLVGGSTRI--PKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~-~i~~ViLvGG~s~~--p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
...++++..+.+...+ . +... +++.|+|.||.++. +.+++.+++... ++ ..|..+...||+.++..
T Consensus 212 A~~i~~~~~~~La~~i-~--~~~~~~p~~vvlgGGv~~~~~~~l~~~l~~~~~--~i---~~~~~a~~~GA~~la~~ 280 (291)
T 1zbs_A 212 VYSLVQNSFDDFLVRN-V--LRYNRPDLPLHFIGSVAFHYREVLSSVIKKRGL--TL---GSVLQSPMEGLIQYHHN 280 (291)
T ss_dssp HHHHHHHHHHHHHHHH-T--GGGCCTTSCEEEESHHHHHTHHHHHHHHHHTTC--CE---EEEESCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-h--cccCCCCceEEEECchHHhhHHHHHHHHHHcCC--ee---cccCcCHHHHHHHHHHh
Confidence 3344444445555555 2 2222 56789999998876 666777666431 22 23568899999999864
No 79
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=90.94 E-value=0.16 Score=52.18 Aligned_cols=71 Identities=11% Similarity=0.014 Sum_probs=52.5
Q ss_pred HHHHHHHHhh--hhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhH-cCCCCCCCCCChhhHHHhHHHHHHHH
Q 010228 335 EELNNDLFRK--TMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDY-FDGKEPNKGVNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 335 e~~~~~~~~~--i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~-f~~~~v~~~~~p~~aVa~GAa~~a~~ 411 (514)
..+.+.+++. +.-.++..++.... .+.|.++||+++++.+.+.+.+. | +.++..+. ..++.|+|||+.|+.
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~-g~pV~~~~-~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRP-DCAVYTAN-AHNDVSFGALRLIDP 435 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHST-TSEEEEES-SCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcC-CCeEEEcC-CCchHHHHHHHHhCc
Confidence 4555556653 55555666665331 26899999999999999999999 9 67776653 456889999999864
No 80
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=90.83 E-value=0.86 Score=42.19 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.2
Q ss_pred cEEEEEcCccceEEEEEECCe
Q 010228 37 TVIGIDLGTTYSCVGVYKNGH 57 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g~ 57 (514)
..++||+|+|+++.+++++++
T Consensus 4 M~L~IDIGNT~ik~gl~~~~~ 24 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDGK 24 (249)
T ss_dssp EEEEEEECSSEEEEEEESSSS
T ss_pred eEEEEEECCCeEEEEEEECCE
Confidence 479999999999999987653
No 81
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=89.62 E-value=0.85 Score=47.05 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhh-hhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHH
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAY-GLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGED 264 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~-~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 264 (514)
+..+.+.++-+..|++. .+|+-.+=|.+.| +..........+|+|+|||+|.+++++ ++... ...+.++|...
T Consensus 101 N~~~fl~~i~~~tG~~i-evIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~--~~~~~---~~~Sl~lG~vr 174 (508)
T 3hi0_A 101 NGPDFIREAEAILGCEI-EVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIK--DKSCG---EGITLPLGGLR 174 (508)
T ss_dssp THHHHHHHHHHHHTSCE-EECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEE--TTEEC---CCEEESCCHHH
T ss_pred CHHHHHHHHHHHHCCCe-EEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEee--CCeee---eEEEecceEEe
Confidence 34566777777789985 5665555554444 332222223459999999999999987 44321 12236789888
Q ss_pred HHHH
Q 010228 265 FDQR 268 (514)
Q Consensus 265 id~~ 268 (514)
+.+.
T Consensus 175 l~e~ 178 (508)
T 3hi0_A 175 LSEQ 178 (508)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 8764
No 82
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=89.22 E-value=15 Score=34.65 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=40.5
Q ss_pred HHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcC--cHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHH
Q 010228 338 NNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTR--IPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 338 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~--~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
...++++..+.+-..+...-.. +++.|+|.||.+. .|.+.+.+++.+ . .|+.+.+.||++++.
T Consensus 228 A~~i~~~~~~~L~~~l~~l~~~--~p~~VvlgGgv~~~~~~~l~~~l~~~i-----~---~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 228 ADALLRQAGEDAWAIARALDPQ--DELPVALCGGLGQALRDWLPPGFRQRL-----V---APQGDSAQGALLLLQ 292 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CCSCEEEESHHHHHTGGGSCHHHHHHC-----C---CCSSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCeEEEECCchHhHHHHHHHHHHhhc-----c---CCCCCHHHHHHHHHh
Confidence 3345555555555555553222 5778999999864 566777777754 1 245778999998874
No 83
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=89.05 E-value=19 Score=37.27 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHH-hhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCC-CChhhHHHhHHHHH
Q 010228 331 RARFEELNNDLF-RKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG-VNPDEAVAYGAAVQ 408 (514)
Q Consensus 331 r~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~-~~p~~aVa~GAa~~ 408 (514)
..++-..++..+ +-+.+.+..+.++. .++.|+|+||.+....+++.+.+..+-..+..+ .--|.++++|+|++
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~t-----g~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~ 354 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLART-----GERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAA 354 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHH
Confidence 344433333322 33334444444443 367899999999999999999876521122222 23478999999999
Q ss_pred HHHhcC
Q 010228 409 GGILSG 414 (514)
Q Consensus 409 a~~~~~ 414 (514)
+....+
T Consensus 355 a~~~~g 360 (576)
T 3ven_A 355 VAVELG 360 (576)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 876544
No 84
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=88.46 E-value=0.94 Score=45.92 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCCc--eeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 186 AQRQATKDAGIIAGLN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~--~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
.-++.++++.++.|++ ++.++++..|++++..... .+.++.+=+|-|+=-..+.+
T Consensus 164 ~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~~---~~~~iglilGTGvgg~~i~~ 220 (457)
T 2yhx_A 164 KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTD---AXIKMGIIFGSGVNAAYWCD 220 (457)
T ss_dssp SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHC---TTEEEEEEESSSEEEEEEEC
T ss_pred HHHHHHHHhHhhcCCcceeEEEEecchhhccchhhcC---CccEEEEEECcEEEEEEEEC
Confidence 5567888888766765 4789999999999876632 34556666777755444444
No 85
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=87.89 E-value=3.2 Score=42.27 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCce--eEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEE
Q 010228 185 DAQRQATKDAGIIAGLNV--ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTI 244 (514)
Q Consensus 185 ~~qr~~l~~a~~~aGl~~--~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 244 (514)
..-.+.+++|.++.|+++ +.++++..|++++..... .+..+-+=+|-|+=-..+.+.
T Consensus 185 ~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~---~~~~iglIlGTG~N~~y~e~~ 243 (485)
T 3o8m_A 185 HDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTD---PQTKMGIIIGTGVNGAYYDVV 243 (485)
T ss_dssp SBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHC---TTEEEEEEESSSEEEEEEEEG
T ss_pred ccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCC---CCcEEEEEEecCcceEEEeec
Confidence 455778899998889863 678999999999876553 345555566777655555443
No 86
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=86.53 E-value=1.1 Score=43.65 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCC----CCChhhHHHhHHHHHHHHh
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNK----GVNPDEAVAYGAAVQGGIL 412 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~----~~~p~~aVa~GAa~~a~~~ 412 (514)
+..-+.+=+...|.+.++... ..++.|+++||+++.|.|.++|++.+++.++.. ..+|+.-=|..-|+.|...
T Consensus 261 v~ATLt~~TA~sIa~~~~~~~---~~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~~d~~Gi~~d~~EA~aFA~LA~~~ 337 (371)
T 3qbx_A 261 IQATLLELSARSISESLLDAQ---PDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRF 337 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---TTCCEEEEESGGGGCHHHHHHHHHHCTTSEEEEGGGGTCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCceEEEECCccCcHHHHHHHHHhCCCCEEeCHHHcCCChhHHHHHHHHHHHHHH
Confidence 333344444445555555432 236789999999999999999999997554422 2234444444455666543
No 87
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=82.20 E-value=2.5 Score=41.24 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=44.6
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCC------CCCChhhHHHhHHHHHH
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPN------KGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~------~~~~p~~aVa~GAa~~a 409 (514)
++..-+.+=+...|.+.++... ..+.|+++||+++.|.|.++|++.+|+.++. .+.+..||+|. |+.|
T Consensus 267 Dv~ATLt~~TA~sIa~~~~~~~----~~~~v~vcGGGa~N~~Lm~~L~~~l~~~~v~~t~~~Gi~~d~~EA~aF--A~LA 340 (370)
T 3cqy_A 267 DIQSTLLDLTCHSIAQDILKLA----QEGELFVCGGGAFNAELMQRLAALLPGYRIDTTSALGVDPKWAEGIAF--AWLA 340 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----SSEEEEEESGGGGCHHHHHHHHHHCTTEEEEEGGGGTCCTTTHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCCcCCHHHHHHHHHhCCCCeeeeHHHhCCChhHHHHHHH--HHHH
Confidence 4444444444555566665532 3558999999999999999999999754442 22344455554 5555
Q ss_pred HH
Q 010228 410 GI 411 (514)
Q Consensus 410 ~~ 411 (514)
..
T Consensus 341 ~~ 342 (370)
T 3cqy_A 341 MR 342 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 88
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=80.95 E-value=0.89 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.1
Q ss_pred cCCcEEEEEcCccceEEEEEEC
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~ 55 (514)
++++++|||+|||++++++++.
T Consensus 2 ekkYvlgID~GTss~Ka~l~d~ 23 (526)
T 3ezw_A 2 EKKYIVALDQGTTSSRAVVMDH 23 (526)
T ss_dssp -CCEEEEEEECSSEEEEEEECT
T ss_pred CceEEEEEEccccceeeeEEcC
Confidence 4689999999999999999863
No 89
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=79.08 E-value=3.1 Score=44.03 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=38.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCC---CChhhHHHhHHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG---VNPDEAVAYGAAVQGGI 411 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~---~~p~~aVa~GAa~~a~~ 411 (514)
.++.|+|+||.+...+|++.+.+.+.+.++..+ .--|.++|.|.+++|+.
T Consensus 599 g~~~VvLsGGV~~N~~Lre~L~~~l~g~~v~~p~~~p~~DnGiaLGQA~~a~~ 651 (657)
T 3ttc_A 599 GITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA 651 (657)
T ss_dssp TCCEEEEESGGGGCHHHHHHHHHHTTTSEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHhCCCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999999998743433322 23478999999998853
No 90
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=78.55 E-value=12 Score=36.55 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=19.5
Q ss_pred cCCcEEEEEcCccceEEEEEECC
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~g 56 (514)
+...++|||+|.|++.+++.++|
T Consensus 7 d~~~~lgiDIGgt~i~~~l~d~G 29 (366)
T 3mcp_A 7 DNRIVMTLDAGGTNFVFSAIQGG 29 (366)
T ss_dssp CCCEEEEEECSSSEEEEEEEETT
T ss_pred CCCEEEEEEECcceEEEEEEECC
Confidence 45689999999999999988744
No 91
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=76.66 E-value=7.9 Score=39.06 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCce--eEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 185 DAQRQATKDAGIIAGLNV--ARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 185 ~~qr~~l~~a~~~aGl~~--~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
..-.+.++++..+.|+++ +.++++..|++++..... .+..+-+=+|-|+=-..+.+
T Consensus 172 ~dv~~~L~~al~r~~l~v~v~al~NDtv~tlla~~y~~---~~~~iglIlGTG~na~yve~ 229 (451)
T 1bdg_A 172 HNVAELLQTELDKRELNVKCVAVVNDTVGTLASCALED---PKCAVGLIVGTGTNVAYIED 229 (451)
T ss_dssp SBHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEEE
T ss_pred CcHHHHHHHHHHHcCCCcceEEEEEchHHHHHHhcccC---CCcEEEEEEeCCcceEEEEc
Confidence 455778888888778763 489999999999876653 34556666777755444444
No 92
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=76.39 E-value=1.8 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.6
Q ss_pred cEEEEEcCccceEEEEEECC
Q 010228 37 TVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g 56 (514)
.++|||+|+..+++|+.+..
T Consensus 2 riLglD~G~kriGvAvsd~~ 21 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEG 21 (98)
T ss_dssp CEEEEEESSSEEEEEEECSC
T ss_pred cEEEEEeCCCEEEEEEEeCC
Confidence 48999999999999998754
No 93
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=75.90 E-value=6.3 Score=42.66 Aligned_cols=51 Identities=20% Similarity=0.401 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCCCC---hhhHHHhHHHHHHHHh
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKGVN---PDEAVAYGAAVQGGIL 412 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~~~---p~~aVa~GAa~~a~~~ 412 (514)
.++.|+|+||.+....+++.+.+.+. +.++..+.. -|..+|.|.|++|+..
T Consensus 705 g~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~iA~~~ 760 (772)
T 4g9i_A 705 GVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFLGGLY 760 (772)
T ss_dssp TCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHHHHHH
T ss_pred CcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHHHHHH
Confidence 36789999999999999999999874 334544332 3788999999888654
No 94
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=74.45 E-value=3.7 Score=44.27 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcC--CCCCCCC---CChhhHHHhHHHHHHHHhcC
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFD--GKEPNKG---VNPDEAVAYGAAVQGGILSG 414 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~--~~~v~~~---~~p~~aVa~GAa~~a~~~~~ 414 (514)
.++.|+|+||.+....|++.+.+.+. +.++..+ .--|.++|.|.|++++....
T Consensus 693 g~~~VvLsGGVa~N~~Lr~~L~~~l~~~g~~v~~p~~~p~~DgGialGQA~~a~~~~~ 750 (761)
T 3vth_A 693 GINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANKILE 750 (761)
T ss_dssp CCCEEEEESGGGGSHHHHHHHHHHHHHTTCEEEECSSSCSSGGGHHHHHHHHHHHHHT
T ss_pred CCCEEEEECcHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCchHHHHHHHHHHHHHhc
Confidence 35689999999999999999988762 3333322 12378999999998875544
No 95
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=74.43 E-value=2.1 Score=44.20 Aligned_cols=21 Identities=29% Similarity=0.188 Sum_probs=18.9
Q ss_pred cCCcEEEEEcCccceEEEEEE
Q 010228 34 KLGTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~ 54 (514)
++++++|||+|||++++++++
T Consensus 3 ~~~~~lgIDiGtts~ka~l~d 23 (515)
T 3i8b_A 3 LRTLVAGVDTSTQSCKVRVTD 23 (515)
T ss_dssp CSCEEEEEEECSSEEEEEEEE
T ss_pred CCcEEEEEEeccccEEEEEEE
Confidence 356899999999999999998
No 96
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=74.13 E-value=1.4 Score=45.11 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=16.7
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 5 m~~~lgIDiGTts~Ka~l~d~ 25 (482)
T 3h6e_A 5 TGATIVIDLGKTLSKVSLWDL 25 (482)
T ss_dssp ---CEEEEECSSEEEEEEECT
T ss_pred hceEEEEEcCCCCeEEEEEEC
Confidence 468999999999999999873
No 97
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=72.89 E-value=9.2 Score=36.22 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=27.8
Q ss_pred cCCceeEeechhhHHHHhhhhcc-CCCceeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDK-KGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~-~~~~~~vlVvD~GggT~dvsv~ 242 (514)
.|++ +.+.++..|+|++-.... ....++++++-+|-| .-..++
T Consensus 97 ~~~p-V~v~NDanaaalaE~~~G~~~~~~~~~~l~~GtG-iG~gii 140 (302)
T 3epq_A 97 MXIP-VGFSTDVNAAALGEFLFGEAXGLDSCLYITIGTG-IGAGAI 140 (302)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEE
Confidence 4776 789999999998764332 223456777777765 333443
No 98
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=72.42 E-value=2.5 Score=43.49 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=18.3
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 6 ~~~~lgIDiGtts~k~~l~d~ 26 (508)
T 3ifr_A 6 GRQVIGLDIGTTSTIAILVRL 26 (508)
T ss_dssp -CEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEEecCcceEEEEECC
Confidence 468999999999999999874
No 99
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=70.71 E-value=2.4 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.7
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 2 ~~~~lgIDiGtts~k~~l~d~ 22 (510)
T 2p3r_A 2 KKYIVALDQGTTSSRAVVMDH 22 (510)
T ss_dssp CCEEEEEEECSSEEEEEEECT
T ss_pred CcEEEEEEcCCcceEEEEECC
Confidence 568999999999999999873
No 100
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=69.16 E-value=3.2 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=18.9
Q ss_pred cCCcEEEEEcCccceEEEEEEC
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~ 55 (514)
++++++|||+|||.+++++++.
T Consensus 8 ~~~~~lgID~GTts~Ka~l~d~ 29 (538)
T 4bc3_A 8 PRRCCLGWDFSTQQVKVVAVDA 29 (538)
T ss_dssp -CCEEEEEEECSSEEEEEEEET
T ss_pred CCCEEEEEEEcCcCEEEEEECC
Confidence 3568999999999999999874
No 101
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=69.08 E-value=3.8 Score=33.95 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.2
Q ss_pred cEEEEEcCccceEEEEEECC
Q 010228 37 TVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~~g 56 (514)
.++|||+|+..+++|+.++.
T Consensus 4 ~iLglD~G~kriGvAvsd~~ 23 (138)
T 1nu0_A 4 TLMAFDFGTKSIGVAVGQRI 23 (138)
T ss_dssp EEEEEECCSSEEEEEEEETT
T ss_pred eEEEEEeCCCEEEEEEEcCC
Confidence 58999999999999999864
No 102
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=67.77 E-value=19 Score=39.91 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcC-Cc--eeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEE
Q 010228 186 AQRQATKDAGIIAG-LN--VARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 186 ~qr~~l~~a~~~aG-l~--~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~ 242 (514)
.-++.++++....| ++ ++.++++..|++++..... .+.++.+=+|-|+=-..+.
T Consensus 184 ~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~~---~~~~iglilGTGvngg~i~ 240 (917)
T 1cza_N 184 DVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDD---QHCEVGLIIGTGTNACYME 240 (917)
T ss_dssp BHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHHC---TTEEEEEEESSSEEEEEEE
T ss_pred chHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhccC---CCcEEEEEEECCcceEEEe
Confidence 45677788877666 54 6899999999999876552 3455666677775443333
No 103
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=67.59 E-value=3.3 Score=43.16 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.7
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~ 24 (554)
T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDL 24 (554)
T ss_dssp CCEEEEEEECSSEEEEEEEET
T ss_pred CcEEEEEEECcccEEEEEECC
Confidence 468999999999999999873
No 104
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=66.49 E-value=3.3 Score=42.56 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=18.4
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 3 m~~~lgIDiGtts~K~~l~d~ 23 (504)
T 3ll3_A 3 LKYIIGMDVGTTATKGVLYDI 23 (504)
T ss_dssp CEEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEEecCCceEEEEEcC
Confidence 358999999999999999874
No 105
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=66.34 E-value=3.8 Score=42.14 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.7
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~ 24 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDR 24 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEEcCCCceEEEEECC
Confidence 468999999999999999873
No 106
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=64.70 E-value=8.2 Score=32.73 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=16.3
Q ss_pred cEEEEEcCccceEEEEEE
Q 010228 37 TVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~ 54 (514)
.++|||.|+++++.++.+
T Consensus 2 ~ILGIDPGl~~tG~gvi~ 19 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIR 19 (158)
T ss_dssp EEEEEECCSSEEEEEEEE
T ss_pred EEEEEccCCCCeeEEEEE
Confidence 589999999999999875
No 107
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=64.19 E-value=7.9 Score=37.66 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=26.8
Q ss_pred eEeechhhHHHHhhh-----hccC--CCceeEEEEEcCCCeeEEEEEE
Q 010228 203 ARIINEPTAAAIAYG-----LDKK--GGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 203 ~~li~Ep~Aaal~~~-----~~~~--~~~~~vlVvD~GggT~dvsv~~ 243 (514)
+++|+-.+=|.+.|. +... ...++++|+|+|||+|.++...
T Consensus 111 v~VIsG~eEa~~~~~gv~~~l~~~~~~~~~t~~v~DiGGGStei~~~~ 158 (353)
T 3aap_A 111 AKTITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDMGGASVQIVFPM 158 (353)
T ss_dssp EEECCHHHHHHHHHHHHHHHTTCSSSCCSSCEEEEEECSSEEEEEEEC
T ss_pred EEECChHHHHHHHHHHHHHHhhhccccccccEEEEEeCCCceEEEEec
Confidence 566666655555442 2211 1234699999999999999873
No 108
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=63.80 E-value=3.6 Score=34.62 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.0
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010228 36 GTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g 56 (514)
+.++|||+|+..+++|+.+..
T Consensus 3 mriLGiDpG~~riGvAv~d~~ 23 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEM 23 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTT
T ss_pred CEEEEEEccCCEEEEEEEECC
Confidence 368999999999999998743
No 109
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=63.49 E-value=5.3 Score=37.18 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=38.9
Q ss_pred eeHHHHHHHHHHHHhhhhcHHHHHHHHcCCC--ccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHH
Q 010228 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLE--KNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (514)
Q Consensus 329 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa 406 (514)
+-++-.+.+-..++......|+..+++.... ...--.|+++||.+.+ +... +.....+|+ -+-.|..
T Consensus 182 ~g~nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~~~~~~~vi~TGG~a~~--l~~~--------~~~~~~~~~-LvL~GL~ 250 (266)
T 3djc_A 182 VGRSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILILATGGFASL--FDKQ--------GLYDHLVPD-LVLQGIR 250 (266)
T ss_dssp CBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCEEEEEESTTGGG--GTTT--------TCCSEECTT-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCChHH--hccC--------CCCCEECcC-hHHHHHH
Confidence 4455556666666666666666666543211 0112369999999863 2221 111123444 6788887
Q ss_pred HHHH
Q 010228 407 VQGG 410 (514)
Q Consensus 407 ~~a~ 410 (514)
+...
T Consensus 251 ~i~~ 254 (266)
T 3djc_A 251 LAAM 254 (266)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 110
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=62.97 E-value=3.9 Score=41.78 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.6
Q ss_pred CCcEEEEEcCccceEEEEEE
Q 010228 35 LGTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~ 54 (514)
++.++|||+|||++++++.+
T Consensus 3 ~~~~lgiDiGtts~k~~l~d 22 (489)
T 2uyt_A 3 FRNCVAVDLGASSGRVMLAR 22 (489)
T ss_dssp CEEEEEEEECSSEEEEEEEE
T ss_pred cceEEEEEecCCCceEEEEE
Confidence 44689999999999999886
No 111
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=62.59 E-value=4.1 Score=41.91 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=18.5
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++++.
T Consensus 4 m~~~lgIDiGtts~k~~l~d~ 24 (511)
T 3hz6_A 4 AFYIATFDIGTTEVKAALADR 24 (511)
T ss_dssp CCEEEEEEECSSEEEEEEECT
T ss_pred ccEEEEEEeCCCceEEEEECC
Confidence 458999999999999999863
No 112
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=62.56 E-value=24 Score=35.74 Aligned_cols=57 Identities=16% Similarity=0.346 Sum_probs=38.1
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCC-EEEEE----EecCCCCCc-hHHHHHHHHHHHHHHHHH
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNG-VFEVL----STNGDTHLG-GEDFDQRVMEYFIKLIKK 279 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~-~~~v~----~~~~~~~~G-G~~id~~l~~~l~~~~~~ 279 (514)
+...+|.+|+||.++-+.+++..+. .+++. ........| |..+=..+++.+.+.+.+
T Consensus 78 E~G~~LalDlGGTn~Rv~~V~l~g~~~~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~i~~fl~~ 140 (485)
T 3o8m_A 78 ETGDFLALDLGGTNLRVVLVKLGGNHDFDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDE 140 (485)
T ss_dssp CEEEEEEEEESSSEEEEEEEEEESSSCEEEEEEEEECCTTGGGSBHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEEecCCeEEEEEEEECCCCceEEEEEEEecCchhccCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999865 23322 223333344 666666666666665544
No 113
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=62.43 E-value=4.3 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.8
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010228 36 GTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~ 55 (514)
+.++|||+|||++++++++.
T Consensus 4 ~~~lgIDiGtT~~k~~l~d~ 23 (503)
T 2w40_A 4 NVILSIDQSTQSTKVFFYDE 23 (503)
T ss_dssp EEEEEEEECSSEEEEEEEET
T ss_pred cEEEEEEeCCcceEEEEECC
Confidence 47899999999999999874
No 114
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=61.83 E-value=31 Score=38.17 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHc-CC--ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 184 NDAQRQATKDAGIIA-GL--NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 184 ~~~qr~~l~~a~~~a-Gl--~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
...-.+.++++..+- ++ +++.++++..|++++..... ....+-+=+|-|+=-..+.+
T Consensus 630 g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~---~~~~iglIlGTG~na~y~e~ 689 (917)
T 1cza_N 630 GHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEE---PTCEVGLIVGTGSNACYMEE 689 (917)
T ss_dssp TSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCC---CCcEEEEEEeCCeeEEEEEc
Confidence 445577788887654 45 58899999999999876553 34555556677765444443
No 115
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=61.67 E-value=4.4 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.3
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
+++++|||+|||++++++.+.
T Consensus 4 ~~~~lgIDiGTts~Ka~l~d~ 24 (572)
T 3jvp_A 4 TKYTIGVDYGTESGRAVLIDL 24 (572)
T ss_dssp -CEEEEEEECSSEEEEEEEET
T ss_pred CCEEEEEecCCcceEEEEEEC
Confidence 458999999999999999874
No 116
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=61.63 E-value=4.1 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=17.3
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010228 36 GTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~ 55 (514)
++++|||+|||++++++++.
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~ 21 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTL 21 (495)
T ss_dssp -CEEEEEECSSEEEEEEECT
T ss_pred cEEEEEeeCCcceEEEEECC
Confidence 36899999999999999863
No 117
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=61.10 E-value=34 Score=34.21 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcC---CceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 186 AQRQATKDAGIIAG---LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 186 ~qr~~l~~a~~~aG---l~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
.-.+.+++|.+.-| ++++.++++..|+.++..... ....+-+=+|-||=-..+.+
T Consensus 161 dv~~lL~~al~r~~~~~v~vvAivNDTvgTLla~~y~~---~~~~iglIlGTGtNa~y~e~ 218 (445)
T 3hm8_A 161 DVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYED---PRCEIGLIVGTGTNACYMEE 218 (445)
T ss_dssp BHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEEE
T ss_pred cHHHHHHHHHHhcCCCCcceEEEecCcHHHHHhhccCC---CCceEEEEEeCCceEEEEEe
Confidence 44778888888764 466889999999999875543 23445555677755444433
No 118
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=60.67 E-value=4.7 Score=41.36 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.9
Q ss_pred CcEEEEEcCccceEEEEEE-CCe
Q 010228 36 GTVIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~-~g~ 57 (514)
++++|||+|||++++++++ +|+
T Consensus 6 ~~~lgIDiGtts~k~~l~d~~G~ 28 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQKGE 28 (501)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC
T ss_pred cEEEEEEeCccceEEEEEcCCCC
Confidence 5899999999999999987 443
No 119
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=60.05 E-value=8.1 Score=36.11 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCC------CCCCCCChhhHHHhHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGK------EPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~------~v~~~~~p~~aVa~GAa~~a 409 (514)
+++.|+|.||.+..+.+.+.+++.+... ++......+.+.++||+..+
T Consensus 233 ~p~~ivlgG~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 233 DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHHH
T ss_pred CCCEEEEeCcccccHHHHHHHHHHHHHhcCccCCEEEECCCCCchHHHHHHHHH
Confidence 3567999999887788888888777422 12223344568999999876
No 120
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=59.99 E-value=4.9 Score=41.16 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.9
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010228 36 GTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~ 55 (514)
+.++|||+|||++++++++.
T Consensus 3 ~~~lgiDiGtt~~k~~l~d~ 22 (497)
T 2zf5_O 3 KFVLSLDEGTTSARAIIFDR 22 (497)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred cEEEEEecCCchhEEEEECC
Confidence 47899999999999999874
No 121
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=59.16 E-value=5.1 Score=41.33 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.9
Q ss_pred CcEEEEEcCccceEEEEEE-CCe
Q 010228 36 GTVIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~-~g~ 57 (514)
++++|||+|||++++++++ +|+
T Consensus 26 ~~~lgIDiGtts~k~~l~d~~G~ 48 (520)
T 4e1j_A 26 GYILAIDQGTTSTRAIVFDGNQK 48 (520)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC
T ss_pred CeEEEEEeCCcceEEEEECCCCC
Confidence 5899999999999999986 443
No 122
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=58.53 E-value=20 Score=36.12 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=29.2
Q ss_pred ceeEeechhhHHHHhh-----hhccC-----------CCceeEEEEEcCCCeeEEEEEE
Q 010228 201 NVARIINEPTAAAIAY-----GLDKK-----------GGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 201 ~~~~li~Ep~Aaal~~-----~~~~~-----------~~~~~vlVvD~GggT~dvsv~~ 243 (514)
..+++|+-.+=|.++| .+... ...+.++++|+|||++.++...
T Consensus 150 ~~v~VIsG~eEa~y~wl~vn~~lg~~~~~~~~~~~~~~~~~t~gvlDlGGgStqi~~~~ 208 (456)
T 3cj1_A 150 RGARILSGQDEGVFGWVTANYLLENFIKYGWVGRWIRPRKGTLGAMDLGGASTQITFET 208 (456)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTTTTSCCEETTEECSSCCCCCEEEEECSSEEEEEEEC
T ss_pred CceEEcCchHHhhhhHHHHHhhhcccccccccccccccCCCceEEEEcCCCceEEEecc
Confidence 4577888777666655 12111 0145689999999999999874
No 123
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=58.01 E-value=7.8 Score=37.09 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=27.1
Q ss_pred ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEE
Q 010228 201 NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 201 ~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 243 (514)
+....-.-|.|.+....... ....+++|+||.|||+..+.
T Consensus 106 p~~~aaanw~ASa~~~A~~~---~~~~llvDIGsTTTDIipi~ 145 (334)
T 3cet_A 106 NMKVSASNWCGTAKWVSKNI---EENCILVDMGSTTTDIIPIV 145 (334)
T ss_dssp GGGTBCCSSHHHHHHHHHHT---CSSEEEEEECSSCEEEEEEE
T ss_pred HHHHHhcCHHHHHHHHHHhc---CCCEEEEEcCcchhhhhhhc
Confidence 33344566777776333331 13479999999999999887
No 124
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=55.99 E-value=8.1 Score=33.07 Aligned_cols=19 Identities=42% Similarity=0.433 Sum_probs=16.7
Q ss_pred CcEEEEEcCccceEEEEEE
Q 010228 36 GTVIGIDLGTTYSCVGVYK 54 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~ 54 (514)
+.++|||.|++++++++.+
T Consensus 1 MrILGIDPGl~~tG~gvi~ 19 (166)
T 4ep4_A 1 MVVAGIDPGITHLGLGVVA 19 (166)
T ss_dssp CEEEEEECCSSEEEEEEEE
T ss_pred CEEEEEccccCceEEEEEE
Confidence 3689999999999999875
No 125
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=54.24 E-value=7 Score=40.08 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=17.6
Q ss_pred CcEEEEEcCccceEEEEEEC
Q 010228 36 GTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~ 55 (514)
.+++|||+|||++++++++.
T Consensus 2 ~~~lgiDiGtts~k~~l~d~ 21 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDH 21 (504)
T ss_dssp CEEEEEEECSSEEEEEEECT
T ss_pred CEEEEEecCCcceEEEEECC
Confidence 36899999999999999873
No 126
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=51.82 E-value=7.6 Score=39.56 Aligned_cols=20 Identities=45% Similarity=0.571 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEE-CCe
Q 010228 38 VIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 38 vvGID~GTt~s~va~~~-~g~ 57 (514)
++|||+|||++++++.+ +|+
T Consensus 2 ~lgiDiGtt~~k~~l~d~~g~ 22 (484)
T 2itm_A 2 YIGIDLGTSGVKVILLNEQGE 22 (484)
T ss_dssp EEEEEECSSEEEEEEECTTSC
T ss_pred EEEEEecCcccEEEEECCCCC
Confidence 69999999999999987 443
No 127
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=51.66 E-value=50 Score=33.26 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcC---CceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEE
Q 010228 185 DAQRQATKDAGIIAG---LNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 185 ~~qr~~l~~a~~~aG---l~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~ 242 (514)
..-.+.+++|.++-| ++++.++++.+|..++..+.. ....+-+=+|-||=-+.+.
T Consensus 184 ~DVv~lL~~al~r~g~~~v~v~AlvNDTVgTL~s~aY~~---~~~~iGlI~GTGtNa~Y~E 241 (470)
T 3f9m_A 184 NNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYED---HQCEVGMIVGTGCNACYME 241 (470)
T ss_dssp SBHHHHHHHHHHHHCSCCCEEEEEECHHHHHHHHHHTTC---TTEEEEEEESSSEEEEEEE
T ss_pred ccHHHHHHHHHHhcCCCCCcEEEEEEcCHHHHHhcccCC---CCceEEEEEecCCceEEee
Confidence 345778899998887 357789999999998876543 2344555567776644333
No 128
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=50.36 E-value=23 Score=34.64 Aligned_cols=49 Identities=22% Similarity=0.174 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCcCcHH-HHHHHHhHcCCC---CCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPK-VQQLLKDYFDGK---EPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~-l~~~l~~~f~~~---~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+++.|+|.||.+..+. +.+.+++.+... .+........+.++||+..+.
T Consensus 295 ~p~~IvlgGgi~~~~~~l~~~i~~~l~~~~~~~i~~~~~~~~a~~~GAa~l~~ 347 (381)
T 1saz_A 295 EVDFIVLTGGLAHEKEFLVPWITKRVSFIAPVLVFPGSNEEKALALSALRVLR 347 (381)
T ss_dssp CCSEEEEEEGGGGCTTTHHHHHHHHHTTTSCEEEEEBCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCcCccChHHHHHHHHHHHHhhcCeEEEecCcchhHHHHHHHHHHc
Confidence 5789999999987544 778888777422 122233344689999998763
No 129
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=49.88 E-value=74 Score=31.91 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=37.3
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCCE---EEEEEecCCCCC---chHHHHHHHHHHHHHHHH
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNGV---FEVLSTNGDTHL---GGEDFDQRVMEYFIKLIK 278 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~~---~~v~~~~~~~~~---GG~~id~~l~~~l~~~~~ 278 (514)
+...++.+|+||.++-+.++...+.. .+.....-.... ++..+-..+.+.+.+.+.
T Consensus 59 E~G~~laiDlGGTnirv~lV~~~G~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~ 120 (457)
T 2yhx_A 59 QAGSFLAIVMGGGDLEVILISLAGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSS 120 (457)
T ss_dssp CCEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCCeEEEEEEEeCCCeeEEEeeEEEEcCCccCCCCHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999988765 222222211222 667777777777665544
No 130
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=46.35 E-value=2.2e+02 Score=28.02 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.7
Q ss_pred cCCCeEEEEcCCc-CcHHHHHHHHhHc
Q 010228 361 NQIDEIVLVGGST-RIPKVQQLLKDYF 386 (514)
Q Consensus 361 ~~i~~ViLvGG~s-~~p~l~~~l~~~f 386 (514)
..+|.|+++||-+ +.+.+++.+.+.+
T Consensus 329 ggvDaIVFTgGIGEns~~vR~~i~~~l 355 (415)
T 2e1z_A 329 HRLDGIIFTGGIGENSVLIRQLVIEHL 355 (415)
T ss_dssp SSCCEEEEEHHHHHHCHHHHHHHHHTT
T ss_pred CCCCEEEECccccccCHHHHHHHHhhH
Confidence 4599999999999 9999999999866
No 131
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=44.37 E-value=16 Score=33.83 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=39.6
Q ss_pred eeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHH
Q 010228 329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQ 408 (514)
Q Consensus 329 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 408 (514)
+-++-.+.+-..++......|+..+++.......--.|+++||.+. .+ ...++. ....+| .-+-.|..+.
T Consensus 180 ~g~nT~~ai~sGi~~g~~g~i~~~i~~~~~e~~~~~~vi~TGG~a~--~l----~~~~~~---~~~~~~-~LvL~GL~~i 249 (268)
T 2h3g_X 180 VGKNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQEPKVIATGGLAK--LI----SEESNV---IDVVDP-FLTLKGLYML 249 (268)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEESTTHH--HH----HHHCSS---CSEECT-THHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH--HH----HhhCCC---CCEECc-chHHHHHHHH
Confidence 3445556666666666666666655542111112337999999865 33 344421 122344 3577788776
Q ss_pred HHH
Q 010228 409 GGI 411 (514)
Q Consensus 409 a~~ 411 (514)
...
T Consensus 250 ~~~ 252 (268)
T 2h3g_X 250 YER 252 (268)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 132
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=42.88 E-value=16 Score=33.70 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=27.8
Q ss_pred cCCceeEeechhhHHHHhhhhccCC-Cc-eeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDKKG-GE-KNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~~~-~~-~~vlVvD~GggT~dvsv~ 242 (514)
.|++ +.+.++..|+|++....... .. ..++++-+|.| .-..++
T Consensus 114 ~~~p-V~v~NDanaaalaE~~~g~~~~~~~~~~~l~~GtG-IG~giv 158 (267)
T 1woq_A 114 LGRP-VEVINDADAAGLAEARYGAGAGVKGTVLVITLGTG-IGSAFI 158 (267)
T ss_dssp HTSC-EEEEEHHHHHHHHHHHHSTTTTCCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEeehhHHHHHHHHHhCCCCCCCCcEEEEEECcc-eEEEEE
Confidence 4766 78999999999985433221 22 35677778876 555554
No 133
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=42.03 E-value=32 Score=32.32 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCcCcH----HHHHHHHhHcCC------------CCCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIP----KVQQLLKDYFDG------------KEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p----~l~~~l~~~f~~------------~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+++.|+|-||.++.+ .+++.+++.... .++....-...+.++||+.++.
T Consensus 224 dPe~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~l~~ 288 (302)
T 3epq_A 224 APXXIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAH 288 (302)
T ss_dssp CCSCEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHH
T ss_pred CchhhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHHHHHHH
Confidence 467899999988764 445555554311 1123334456799999998874
No 134
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=40.83 E-value=33 Score=34.41 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=27.8
Q ss_pred ceeEeechhhHHHHhhh-----hccCC--CceeEEEEEcCCCeeEEEEEE
Q 010228 201 NVARIINEPTAAAIAYG-----LDKKG--GEKNILVFDLGGGTFDVSILT 243 (514)
Q Consensus 201 ~~~~li~Ep~Aaal~~~-----~~~~~--~~~~vlVvD~GggT~dvsv~~ 243 (514)
..+++|+.-+=+.++|. +..-. ...++.++|+|||++.++...
T Consensus 150 ~~v~iisG~eEg~y~wi~vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~ 199 (452)
T 3zx3_A 150 QGAKIITGQEEGAYGWITINYLLGRFKTPGGSTFGALDLGGASTQITFVP 199 (452)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHTTTTC---CCCCEEEEECSSEEEEEECC
T ss_pred CceEECCchhhhhhhHHHHHhhhccccCCCCCceEEEecCCCceEEEecc
Confidence 35778877766665542 11111 235678999999999998654
No 135
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=40.39 E-value=44 Score=35.01 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=53.7
Q ss_pred eEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHh-HcCCCCCCCCCChhhHHHh
Q 010228 325 FSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKD-YFDGKEPNKGVNPDEAVAY 403 (514)
Q Consensus 325 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~-~f~~~~v~~~~~p~~aVa~ 403 (514)
..+.||..+++++.. .-.-+..-++..|+++++...+|+.|+|.||+..-=-..+.+.= .+|.........-..+.-.
T Consensus 498 ~~i~itq~DIr~~ql-AKaAi~agi~~Ll~~~gi~~~di~~v~lAGaFG~~l~~~~a~~iGllP~~~~~ki~~vGN~sl~ 576 (631)
T 3zyy_X 498 KDIVITEADIQNLIR-AKAAIFAGVRTMLAMVDLPLEAIDRVIIAGGFGKYLNIKDAITIGLLPDIDINKFSYVGNSSLK 576 (631)
T ss_dssp SCEEEEHHHHHHHHH-HHHHHHHHHHHHHHHTTCCGGGCCEEEEESSSCSEEEHHHHHHHTSSCCSCGGGEEECSCHHHH
T ss_pred CcEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeccccccCCHHHHhhcCCCCCccccCEEEECcHHHH
Confidence 357889999988743 23345566778899999999999999999999886555665543 3443221111112235556
Q ss_pred HHHHH
Q 010228 404 GAAVQ 408 (514)
Q Consensus 404 GAa~~ 408 (514)
||.+.
T Consensus 577 GA~~~ 581 (631)
T 3zyy_X 577 GARKA 581 (631)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 136
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=39.02 E-value=90 Score=31.13 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=24.3
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCCEEEEEE
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNGVFEVLS 253 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~ 253 (514)
+...+|.+|+||.++-+.++++.++ +++..
T Consensus 57 E~G~~LAlDlGGTn~RV~~V~l~g~-~~~~~ 86 (445)
T 3hm8_A 57 ERGDFLALDLGGTNFRVLLVRVTTG-VQITS 86 (445)
T ss_dssp CCEEEEEEEESSSSEEEEEEEESSS-EEEEE
T ss_pred eeeEEEEEEecCCeEEEEEEEECCc-eEEEE
Confidence 4567899999999999999999776 44433
No 137
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=38.23 E-value=1e+02 Score=30.79 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=35.7
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeC-C-EEEE----EEecCC-CCCchHHHHHHHHHHHHHHHH
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDN-G-VFEV----LSTNGD-THLGGEDFDQRVMEYFIKLIK 278 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~-~-~~~v----~~~~~~-~~~GG~~id~~l~~~l~~~~~ 278 (514)
+...++.+|+||.++-+.+++..+ . .+++ ...... ..-.|..+-..+++.+.+.+.
T Consensus 66 E~G~~lalDlGGTn~Rv~~V~l~G~~~~~~i~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~ 128 (451)
T 1bdg_A 66 ETGNFLALDLGGTNYRVLSVTLEGKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLE 128 (451)
T ss_dssp CCEEEEEEEESSSSEEEEEEEECC-CCCCEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCCeEEEEEEecCCCCcceEEEEEEEecCCcccCCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999976 4 1222 222222 223456666666666655443
No 138
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=36.40 E-value=15 Score=34.45 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGG 410 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~ 410 (514)
+++.|+|.||.+.. +.+.+++.+.. +......+..+.+.||++++.
T Consensus 232 ~p~~vvlgGGv~~~--l~~~l~~~l~~-~~~~i~~~~~a~~~GAa~la~ 277 (291)
T 1zxo_A 232 KQYPVHFIGSIAYC--YKEILQDAARQ-TGIQIGKILQSPMEGLIQYHS 277 (291)
T ss_dssp TTSCEEECSHHHHH--THHHHHHHTTT-TTCCEEEECSCTHHHHHTTSS
T ss_pred CCceEEEECcHHHH--HHHHHHHHHhc-CCcEEeecCCCHHHHHHHHHH
Confidence 56789999998876 66777777743 111122345788899998764
No 139
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=35.84 E-value=22 Score=36.61 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=30.9
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHcCCceeEe-echhhHHHHhh
Q 010228 173 KDAVVTVPAYFNDAQRQATKDAGIIAGLNVARI-INEPTAAAIAY 216 (514)
Q Consensus 173 ~~vviTVPa~~~~~qr~~l~~a~~~aGl~~~~l-i~Ep~Aaal~~ 216 (514)
..++.-+|..++...-.++.+++...|++.... +.--.+..+..
T Consensus 131 ~~~I~v~~~~i~~~d~a~~in~a~~~g~~i~~~i~q~dd~vli~n 175 (607)
T 1nbw_A 131 EGWIVLIDDAVDFLDAVWWLNEALDRGINVVAAILKKDDGVLVNN 175 (607)
T ss_dssp TCEEEEECSSSCHHHHHHHHHHHHHTTCCEEEEEESSSCHHHHHT
T ss_pred CCEEEECCCccCHHHHHHHHHHHHHcCCcEEEEEEecCCEEEEcc
Confidence 456666999999999999999999988866443 33334444433
No 140
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=35.18 E-value=71 Score=30.37 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=28.1
Q ss_pred cCCceeEeechhhHHHHhhhhccC-CCceeEEEEEcCCCeeEEEEE
Q 010228 198 AGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSIL 242 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~~~~~~~-~~~~~vlVvD~GggT~dvsv~ 242 (514)
.|++ +.+.++..|+|++...... ...++++++-+|.| +-..++
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii 174 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGII 174 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEE
Confidence 3665 6889999999987543221 23456778888877 444444
No 141
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=35.18 E-value=30 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCce
Q 010228 175 AVVTVPAYFNDAQRQATKDAGIIAGLNV 202 (514)
Q Consensus 175 vviTVPa~~~~~qr~~l~~a~~~aGl~~ 202 (514)
-.++.|+.++..+|..+-+.|+..||..
T Consensus 34 ~~l~FP~sLs~~eR~~IH~lA~~~GL~h 61 (86)
T 1msz_A 34 MQLEFPPSLNSHDRLRVHQIAEEHGLRH 61 (86)
T ss_dssp SEEEECTTCCSHHHHHHHHHHHHTTEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 4688899999999999999999999864
No 142
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=33.92 E-value=4.1 Score=38.38 Aligned_cols=59 Identities=14% Similarity=0.024 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHH-HcCC-ceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCe
Q 010228 172 IKDAVVTVPAYFNDAQRQATKDAGI-IAGL-NVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGT 236 (514)
Q Consensus 172 ~~~vviTVPa~~~~~qr~~l~~a~~-~aGl-~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT 236 (514)
+..+.+++|..- ......+++..+ ..++ ..+.+.++..||+++-. . .+..+++=+|-|.
T Consensus 58 i~~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge~---g--~~~~v~v~~GTGi 118 (291)
T 1zxo_A 58 FNAVYFYGAGCT-PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGLC---G--QKAGIACILGTGS 118 (291)
T ss_dssp ---CEEECTTCC-TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHTT---T--TSCBEEEEESSSE
T ss_pred ccEEEEEcCCCC-HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhhc---C--CCCcEEEEeCCCh
Confidence 345778888753 221123444333 3454 36889999999998652 1 2233444467776
No 143
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=33.58 E-value=33 Score=31.85 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.6
Q ss_pred cEEEEEcCccceEEEEEE-CCe
Q 010228 37 TVIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 37 ~vvGID~GTt~s~va~~~-~g~ 57 (514)
..+.||.|+|++++++++ +++
T Consensus 24 M~L~IDiGNT~ik~g~~~~~~~ 45 (271)
T 2f9w_A 24 MILELDCGNSLIKWRVIEGAAR 45 (271)
T ss_dssp EEEEEEECSSCEEEEEEETTTE
T ss_pred cEEEEEeCCCeeEEEEEeCCCE
Confidence 579999999999999998 664
No 144
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=33.36 E-value=26 Score=33.51 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=16.5
Q ss_pred EEEEEcCccceEEEEEE-CCe--EEEE--EcCCCCcccceEEE
Q 010228 38 VIGIDLGTTYSCVGVYK-NGH--VEII--ANDQGNRITPSWVA 75 (514)
Q Consensus 38 vvGID~GTt~s~va~~~-~g~--~~~i--~~~~g~~~~Ps~v~ 75 (514)
++|+|+|..|++++..+ +|. +..+ +.|.|...++..+.
T Consensus 2 iiG~DIGGAn~K~a~~~~~g~~~~~~~~~PlW~~~~~L~~~l~ 44 (334)
T 3cet_A 2 ILGIDIGGANTKITELHENGEFKVHHLYFPMWKNNDKLAEVLK 44 (334)
T ss_dssp EEEEEEC--CEEEEEECSTTCCEEEEC----------------
T ss_pred eeEEEecccceeeeeecCCCceEEEEEecCCcCCchHHHHHHH
Confidence 79999999999999865 554 3333 56777655565553
No 145
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=32.78 E-value=1.1e+02 Score=30.80 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCeeEEEEEEEeCC
Q 010228 223 GEKNILVFDLGGGTFDVSILTIDNG 247 (514)
Q Consensus 223 ~~~~vlVvD~GggT~dvsv~~~~~~ 247 (514)
+...+|.+|+||.++-|..+++.++
T Consensus 75 E~G~fLAlDlGGTNfRV~~V~L~g~ 99 (470)
T 3f9m_A 75 EVGDFLSLDLGGTNFRVMLVKVGEG 99 (470)
T ss_dssp CCEEEEEEEESSSEEEEEEEEEEC-
T ss_pred cceEEEEEEecCceEEEEEEEECCC
Confidence 4567899999999999999999764
No 146
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=32.41 E-value=38 Score=32.88 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.5
Q ss_pred CCcEEEEEcCccceEEEEEEC
Q 010228 35 LGTVIGIDLGTTYSCVGVYKN 55 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~~ 55 (514)
.++++|||+|.|++.+++.+.
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~ 48 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVRE 48 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEE
T ss_pred CCeEEEEEEccccEEEEEEec
Confidence 568999999999999998864
No 147
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=32.07 E-value=38 Score=33.08 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=18.8
Q ss_pred CcEEEEEcCccceEEEEEECC
Q 010228 36 GTVIGIDLGTTYSCVGVYKNG 56 (514)
Q Consensus 36 ~~vvGID~GTt~s~va~~~~g 56 (514)
+.++|||+|.|++++++.+.+
T Consensus 2 ~~vlgidiGgt~ik~al~d~~ 22 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFEDE 22 (381)
T ss_dssp CEEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEECCccceeEEEEecc
Confidence 368999999999999999866
No 148
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=30.57 E-value=26 Score=33.54 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.2
Q ss_pred CCcEEEEEcCccceEEEEEE-CCe
Q 010228 35 LGTVIGIDLGTTYSCVGVYK-NGH 57 (514)
Q Consensus 35 ~~~vvGID~GTt~s~va~~~-~g~ 57 (514)
..+++|||+|+|++++++.+ +|+
T Consensus 29 ~~~~lgiDiGgt~i~~~l~d~~G~ 52 (343)
T 2yhw_A 29 TLSALAVDLGGTNLRVAIVSMKGE 52 (343)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSC
T ss_pred CcEEEEEEECCCEEEEEEECCCCc
Confidence 35799999999999999987 443
No 149
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=30.27 E-value=32 Score=32.76 Aligned_cols=41 Identities=29% Similarity=0.290 Sum_probs=28.7
Q ss_pred HHcCCceeEeechhhHHHHhhhhc---------c--CCCceeEEEEEcCCCe
Q 010228 196 IIAGLNVARIINEPTAAAIAYGLD---------K--KGGEKNILVFDLGGGT 236 (514)
Q Consensus 196 ~~aGl~~~~li~Ep~Aaal~~~~~---------~--~~~~~~vlVvD~GggT 236 (514)
+..|++.+.+.++..|+|++-... . ....++++++-+|-|-
T Consensus 99 ~~~~~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GTGi 150 (332)
T 1sz2_A 99 KNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGL 150 (332)
T ss_dssp HHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSSE
T ss_pred HHhCCCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCccc
Confidence 345888789999999999976432 0 1234567888888873
No 150
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Probab=27.90 E-value=62 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 010228 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 336 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
++++...+.+.+.++++|+++++++++|++|+.-|++.++ -+.+.+.|+
T Consensus 211 ~~~~~~~~~~~~~i~~aL~~agl~~~did~v~~H~~~~~~---~d~i~~~lg 259 (317)
T 1hnj_A 211 EVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRI---ISATAKKLG 259 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEECCSCHHH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHcC
Confidence 4445556677888999999999999999999998887553 557888883
No 151
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=27.70 E-value=1.3e+02 Score=31.49 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHH
Q 010228 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKV 378 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l 378 (514)
+-+++.+-+++.+.++++++++.+|..+.++|-.+-...+
T Consensus 266 ~~v~~~in~li~~l~~~~~i~~~~I~~~~v~GNt~M~hLl 305 (631)
T 3zyy_X 266 KAVLSTINELIFQLCKEHGVEKKEIMAAVVAGNTTMTHLF 305 (631)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHeeEEEEEccHHHHHHH
Confidence 3345666777888888899999999999999976544333
No 152
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=27.29 E-value=22 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCccceEEEEEECCeEEEE
Q 010228 34 KLGTVIGIDLGTTYSCVGVYKNGHVEII 61 (514)
Q Consensus 34 ~~~~vvGID~GTt~s~va~~~~g~~~~i 61 (514)
....+|-|.-|+.|..++.+.+.-|.++
T Consensus 38 ~~~~~IVIHpGS~~lRIG~AsD~~P~~i 65 (655)
T 4am6_A 38 DPTATIVIHPGSNSIKIGFPKDDHPVVV 65 (655)
T ss_dssp CGGGEEEEECCSSEEEEECTTSSSCEEE
T ss_pred CCCCeEEEcCCCcceeeeecCCCCCccc
Confidence 4467999999999999998877666655
No 153
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=26.63 E-value=2.2e+02 Score=28.03 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCc----
Q 010228 186 AQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLG---- 261 (514)
Q Consensus 186 ~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~G---- 261 (514)
.++-..+++++..|-+. .+.+++++-+|+| +|+.-+.+++.--....-.+.-|
T Consensus 200 S~~yVa~r~a~~lgk~~--------------------~~~~lIv~HLGnG---aSi~Ai~~GksvDTsMG~TpleGl~mg 256 (415)
T 3sk3_A 200 SHFYVTQEAAKMLNKPV--------------------EELNIITCHLGNG---GSVSAIRNGKCVDTSMGLTPLEGLVMG 256 (415)
T ss_dssp HHHHHHHHHHHHTTSCG--------------------GGCCEEEEECSSS---CEEEEEETTEEEEECCCCCCSCC----
T ss_pred hHHHHHHHHHHHhCCCh--------------------HHCcEEEEEeCCC---ceEEEEECCEEEEeCCCcCCCCCccCC
Q ss_pred --hHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccC-CceeEEeeeHHHHHHHH
Q 010228 262 --GEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFD-GIDFSEPLTRARFEELN 338 (514)
Q Consensus 262 --G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~-~~~~~~~itr~~~e~~~ 338 (514)
.-++|-.+.-+++++.. ...++++..|.... -+-.+.. ..|......+..=.+-.
T Consensus 257 tRsGdiDp~~l~~l~~~~g------------------~s~~ei~~~Lnk~S----GLlglsG~S~D~R~le~~~~gd~~A 314 (415)
T 3sk3_A 257 TRSGDIDPAIIFHLHDTLG------------------MSVDQINKMLTKES----GLLGLTEVTSDCRYVEDNYATKEDA 314 (415)
T ss_dssp ---CCCCHHHHHHHHHHHT------------------CCHHHHHHHC----------CCSTTTTCGGGCSSCCCCCHHHH
T ss_pred CCCCCCChHHHHHHHHhcC------------------CCHHHHHHHHhcCc----CcccccCCcchHHHHHHHHcCCHhH
Q ss_pred HHHHhhhhcHHHHHHHHcCCCccC-CCeEEEEcCCc-CcHHHHHHHHhHc
Q 010228 339 NDLFRKTMGPVKKAMEDAGLEKNQ-IDEIVLVGGST-RIPKVQQLLKDYF 386 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~-i~~ViLvGG~s-~~p~l~~~l~~~f 386 (514)
+-.++-+.-.|.+.+-..-..-.- +|.|+++||-+ +.+.+|+.+-+.+
T Consensus 315 ~lA~d~f~yri~k~IGa~aa~L~G~vDaIVFTgGIGEns~~vR~~v~~~l 364 (415)
T 3sk3_A 315 KRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGIGENAAMVRELSLGKL 364 (415)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSTTCCCEEEEEHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCCHHHHHHHHhhc
No 154
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=23.44 E-value=48 Score=32.08 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.7
Q ss_pred cCCceeEeechhhHHHHh
Q 010228 198 AGLNVARIINEPTAAAIA 215 (514)
Q Consensus 198 aGl~~~~li~Ep~Aaal~ 215 (514)
.++..+.+.++..|+|++
T Consensus 127 ~~~~pv~v~NDa~aaalg 144 (373)
T 2q2r_A 127 FPPGHSAILNDLEAGGFG 144 (373)
T ss_dssp SCTTSEEEEEHHHHHHHH
T ss_pred cCCCCEEEEccHhHHhcc
Confidence 355468899999999998
No 155
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2
Probab=22.68 E-value=82 Score=29.52 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=37.1
Q ss_pred HHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 010228 337 LNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 337 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
+++-..+.+.+.+++.|+++++++++|+.|+.-+.+.+ +-+.+.+.|+
T Consensus 214 ~~~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~---~~d~~~~~lg 261 (322)
T 1ub7_A 214 VFKFAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLR---IIDAARERLG 261 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHH---HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHH---HHHHHHHHcC
Confidence 34445567778899999999999999999999887754 3456777773
No 156
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=22.19 E-value=66 Score=30.15 Aligned_cols=43 Identities=30% Similarity=0.386 Sum_probs=31.1
Q ss_pred CeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHH
Q 010228 364 DEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 364 ~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 409 (514)
..|.|+|........+..|+. + +.++. ..+++.++..|....+
T Consensus 248 ~~v~LiG~~~L~~~Y~~AL~~-~-G~~~~-~~d~~~~~~~GL~~~~ 290 (295)
T 3nuw_A 248 QAISLVAGSSLTSRYQQAFAA-I-GREVS-AVAGDTAFQTGIRSIA 290 (295)
T ss_dssp SCEEEEECHHHHHHHHHHHHH-T-TCCEE-EEEHHHHHHHHHHHHH
T ss_pred CeEEEEeCHHHHHHHHHHHHH-c-CCCce-ecCHHHHHHHHHHHHH
Confidence 469999999888888888875 4 44432 2378888888876544
No 157
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=21.93 E-value=1.8e+02 Score=27.00 Aligned_cols=26 Identities=46% Similarity=0.625 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCeeEEEEEEEeCCEEE
Q 010228 225 KNILVFDLGGGTFDVSILTIDNGVFE 250 (514)
Q Consensus 225 ~~vlVvD~GggT~dvsv~~~~~~~~~ 250 (514)
..++.+|+|+..+.+.++...+..+.
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~il~ 31 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGVVQQ 31 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCCEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCCEEE
Confidence 46899999999999999987655443
No 158
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}
Probab=21.75 E-value=90 Score=28.97 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=36.0
Q ss_pred HHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcC
Q 010228 339 NDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFD 387 (514)
Q Consensus 339 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~ 387 (514)
+...+.+.+.+++.|+++++++++|+.+++-|.++++ -+.+.+.|+
T Consensus 206 ~~~~~~~~~~i~~al~~agl~~~did~~~~H~~~~~~---~~~~~~~lg 251 (309)
T 2ebd_A 206 KVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRI---INALAEKLN 251 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCSEEEECCSCHHH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHH---HHHHHHHhC
Confidence 3445567788999999999999999999999887653 456777773
No 159
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=21.49 E-value=2.5e+02 Score=26.12 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=33.7
Q ss_pred ceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 010228 224 EKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKL 276 (514)
Q Consensus 224 ~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~ 276 (514)
...++.+|+||..+.+.++...+..+......... .+...+-+.+.+.+.+.
T Consensus 23 ~~~~lgiDiGgt~i~~~l~d~~g~il~~~~~~~~~-~~~~~~~~~i~~~i~~~ 74 (327)
T 2ap1_A 23 NAMYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPH-TSYSAFLDAVCELVEEA 74 (327)
T ss_dssp CCEEEEEEECSSEEEEEEEETTCCEEEEEEEECCC-SCHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCEEEEEEEeCCCCEEEEEEecCCC-CCHHHHHHHHHHHHHHH
Confidence 34689999999999999998766544333322222 25566666666665543
No 160
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=21.41 E-value=91 Score=28.22 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHH
Q 010228 362 QIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAA 406 (514)
Q Consensus 362 ~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa 406 (514)
.++.|+| |++.+|++.+.|++.+ +.++ .||-.++++=+.
T Consensus 174 gad~IVL--GCTh~p~l~~~i~~~~-gVpv---ID~~~a~~~~~~ 212 (245)
T 3qvl_A 174 GSGAIVL--GSGGMATLAQQLTREL-RVPV---IDGVSAAVKMVE 212 (245)
T ss_dssp CCSEEEE--CCGGGGGGHHHHHHHH-TSCE---ECHHHHHHHHHH
T ss_pred CCCEEEE--CCCChHHHHHHHHHHc-CCeE---EccHHHHHHHHH
Confidence 4677777 7889999999999999 4433 477776665544
No 161
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=20.39 E-value=74 Score=29.35 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=34.0
Q ss_pred cCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHH
Q 010228 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQG 409 (514)
Q Consensus 361 ~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 409 (514)
..++.|+| |++.+|++.+.+++.++ ..+ ...||.+++|+-+.-+-
T Consensus 177 ~g~D~iVL--GCTh~pll~~~i~~~~~-~~v-~vIDs~~~~a~~~~~~l 221 (269)
T 3ist_A 177 TKIDTVIL--GCTHYPLLKPIIENFMG-DGV-AVINSGEETASEVSALL 221 (269)
T ss_dssp SCCCEEEE--CSTTGGGGHHHHHHHHC-TTS-EEECTHHHHHHHHHHHH
T ss_pred CCCCEEEE--CCCCHHHHHHHHHHHcC-CCC-eEECcHHHHHHHHHHHH
Confidence 35778887 89999999999999984 222 23588888888776443
Done!