Query 010230
Match_columns 514
No_of_seqs 279 out of 2036
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 7.8E-64 1.7E-68 525.9 41.2 324 76-514 107-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 1.2E-61 2.5E-66 492.4 38.4 324 84-512 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 9.2E-62 2E-66 491.1 36.4 317 80-512 1-317 (317)
4 cd05487 renin_like Renin stimu 100.0 8E-61 1.7E-65 486.2 39.3 325 82-513 1-326 (326)
5 cd05486 Cathespin_E Cathepsin 100.0 3.2E-61 7E-66 487.1 36.0 316 90-512 1-316 (316)
6 cd05485 Cathepsin_D_like Cathe 100.0 3.3E-60 7.3E-65 481.9 38.3 327 80-512 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 7.9E-60 1.7E-64 477.2 37.4 316 81-512 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 1.9E-59 4E-64 475.0 37.4 320 80-512 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 3.1E-59 6.7E-64 473.2 38.6 317 87-513 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 1.1E-58 2.3E-63 483.5 40.8 324 75-514 125-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.4E-58 1.6E-62 476.2 41.1 324 75-514 124-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 6.9E-55 1.5E-59 440.9 30.0 316 89-513 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 5E-51 1.1E-55 405.4 30.6 219 90-316 1-225 (278)
14 PLN03146 aspartyl protease fam 100.0 3.9E-50 8.4E-55 420.1 32.6 304 86-513 81-426 (431)
15 cd05473 beta_secretase_like Be 100.0 4.2E-50 9E-55 413.6 32.3 315 88-514 2-346 (364)
16 KOG1339 Aspartyl protease [Pos 100.0 3.4E-49 7.4E-54 410.7 31.8 320 78-513 35-392 (398)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.8E-49 6.1E-54 401.5 30.5 282 88-513 2-323 (326)
18 cd05474 SAP_like SAPs, pepsin- 100.0 1.6E-48 3.5E-53 390.8 32.8 278 89-513 2-295 (295)
19 cd05472 cnd41_like Chloroplast 100.0 6.3E-48 1.4E-52 387.2 29.2 287 89-513 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 1.4E-45 3.1E-50 366.6 33.9 227 90-318 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 5.4E-45 1.2E-49 359.5 27.7 247 89-513 1-263 (265)
22 cd05475 nucellin_like Nucellin 100.0 1.2E-44 2.7E-49 358.3 28.2 258 88-514 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 2.4E-41 5.3E-46 346.3 27.6 313 96-513 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 1.1E-21 2.3E-26 166.7 13.0 108 92-200 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 9.9E-21 2.1E-25 172.6 16.0 136 90-248 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.8 1.2E-18 2.5E-23 158.7 12.8 153 268-512 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.0 2.1E-05 4.5E-10 64.3 7.1 92 89-202 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0017 3.6E-08 55.9 9.2 101 80-202 2-103 (121)
29 PF05184 SapB_1: Saposin-like 97.1 0.00044 9.5E-09 46.6 3.0 37 387-423 3-39 (39)
30 PF13650 Asp_protease_2: Aspar 96.5 0.016 3.4E-07 46.4 8.4 88 92-201 1-89 (90)
31 PF11925 DUF3443: Protein of u 96.3 0.046 1E-06 55.0 11.7 196 91-306 25-272 (370)
32 COG3577 Predicted aspartyl pro 95.8 0.062 1.3E-06 49.6 8.9 92 75-181 91-183 (215)
33 PF03489 SapB_2: Saposin-like 95.6 0.0083 1.8E-07 39.3 2.0 34 323-356 2-35 (35)
34 cd05479 RP_DDI RP_DDI; retrope 95.3 0.12 2.5E-06 44.7 8.8 92 86-202 13-107 (124)
35 cd05484 retropepsin_like_LTR_2 94.0 0.24 5.1E-06 40.1 7.1 75 90-182 1-78 (91)
36 cd05479 RP_DDI RP_DDI; retrope 93.5 0.4 8.6E-06 41.3 8.0 25 486-510 100-124 (124)
37 PF08284 RVP_2: Retroviral asp 92.4 0.4 8.8E-06 42.0 6.5 27 486-512 105-131 (135)
38 TIGR02281 clan_AA_DTGA clan AA 92.2 2.8 6.2E-05 35.8 11.4 37 265-311 8-44 (121)
39 cd06095 RP_RTVL_H_like Retrope 92.1 0.83 1.8E-05 36.5 7.5 81 93-202 2-84 (86)
40 TIGR03698 clan_AA_DTGF clan AA 86.7 3.9 8.5E-05 34.2 7.8 23 486-508 85-107 (107)
41 PF13975 gag-asp_proteas: gag- 84.6 1.6 3.5E-05 33.6 4.2 33 87-121 6-38 (72)
42 smart00741 SapB Saposin (B) Do 82.4 1.5 3.2E-05 33.4 3.3 37 387-423 2-38 (76)
43 PF13650 Asp_protease_2: Aspar 79.1 2.7 5.9E-05 33.1 3.8 29 276-311 3-31 (90)
44 PF13975 gag-asp_proteas: gag- 75.9 4.7 0.0001 30.9 4.2 29 276-311 13-41 (72)
45 KOG1340 Prosaposin [Lipid tran 75.5 5.8 0.00012 37.6 5.3 96 324-435 78-174 (218)
46 PF00077 RVP: Retroviral aspar 74.9 3.9 8.5E-05 33.3 3.7 29 91-121 7-35 (100)
47 cd05484 retropepsin_like_LTR_2 72.3 5.4 0.00012 32.0 3.9 30 275-311 4-33 (91)
48 smart00741 SapB Saposin (B) Do 71.8 2.5 5.4E-05 32.1 1.7 36 321-356 41-76 (76)
49 cd05483 retropepsin_like_bacte 69.2 7.1 0.00015 31.0 4.0 29 276-311 7-35 (96)
50 PF07966 A1_Propeptide: A1 Pro 67.8 2.7 5.8E-05 26.2 0.9 24 30-53 1-24 (29)
51 PF07172 GRP: Glycine rich pro 65.6 5.1 0.00011 32.7 2.4 22 3-24 1-22 (95)
52 cd06095 RP_RTVL_H_like Retrope 64.1 8.5 0.00018 30.6 3.4 29 276-311 3-31 (86)
53 PF12384 Peptidase_A2B: Ty3 tr 63.8 30 0.00066 31.1 6.9 24 289-312 45-68 (177)
54 PF09668 Asp_protease: Asparty 62.4 21 0.00046 30.7 5.7 91 87-201 22-114 (124)
55 KOG1340 Prosaposin [Lipid tran 61.4 7 0.00015 37.0 2.8 48 312-359 159-206 (218)
56 cd05482 HIV_retropepsin_like R 58.9 12 0.00025 30.1 3.3 26 93-120 2-27 (87)
57 PF00077 RVP: Retroviral aspar 47.6 12 0.00026 30.3 1.8 26 276-308 10-35 (100)
58 cd05481 retropepsin_like_LTR_1 45.0 23 0.00049 28.7 3.0 23 290-312 11-33 (93)
59 PF09668 Asp_protease: Asparty 41.2 34 0.00073 29.5 3.5 30 275-311 28-57 (124)
60 PF12384 Peptidase_A2B: Ty3 tr 41.0 33 0.00072 30.9 3.5 29 91-119 34-62 (177)
61 PF08284 RVP_2: Retroviral asp 40.5 1.9E+02 0.0041 25.1 8.2 29 88-118 20-48 (135)
62 COG3577 Predicted aspartyl pro 37.4 45 0.00098 31.2 3.9 36 266-311 103-138 (215)
63 COG5550 Predicted aspartyl pro 36.2 22 0.00049 30.3 1.6 21 292-312 29-50 (125)
64 PRK15249 fimbrial chaperone pr 32.8 90 0.002 30.4 5.5 19 76-94 44-62 (253)
65 TIGR03698 clan_AA_DTGF clan AA 29.0 63 0.0014 26.8 3.2 66 92-173 2-73 (107)
66 COG4714 Uncharacterized membra 27.1 57 0.0012 30.9 2.8 27 1-27 1-27 (303)
67 TIGR01165 cbiN cobalt transpor 22.9 83 0.0018 25.3 2.7 25 1-25 1-25 (91)
68 cd06094 RP_Saci_like RP_Saci_l 22.7 2.9E+02 0.0062 22.3 5.7 22 101-122 8-29 (89)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.8e-64 Score=525.85 Aligned_cols=324 Identities=40% Similarity=0.756 Sum_probs=287.1
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCccee--CCc---eEEE
Q 010230 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK--NGK---SADI 150 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~--~~~---~~~~ 150 (514)
.....||.|+.|.+|+++|+||||||+|.|++||||+++||++..|. ...|..++.|+|++|+||+. .+. .+.+
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i 185 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYI 185 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEE
Confidence 34679999999999999999999999999999999999999999997 56899999999999999998 555 6789
Q ss_pred EeccceEEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeeccccccc---CCCCCcHHHHHHHcCCCCCCE
Q 010230 151 HYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEIS---VGKAVPVWYNMVNQGLVNEPV 227 (514)
Q Consensus 151 ~Y~~G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s---~~~~~~~~~~l~~qg~i~~~~ 227 (514)
.|++|++.|.+++|+|++|+..+++|.||+++..++..|....+|||||||++..+ .....|++++|++||+|++++
T Consensus 186 ~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~ 265 (482)
T PTZ00165 186 QYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNI 265 (482)
T ss_pred EeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccce
Confidence 99999999999999999999999999999999876655667788999999998873 344688999999999999999
Q ss_pred EEEEecCCCCCCCCcEEEECccCCCCC--ccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCH
Q 010230 228 FSFWFNRNADEEEGGEIVFGGMDPDHY--KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPT 305 (514)
Q Consensus 228 FSl~l~~~~~~~~~G~L~fGg~d~~~~--~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~ 305 (514)
||+||.+..+ .+|+|+|||+|+.++ .|++.|+|+...++|.|.+++|+++++.+..+.....+++||||+++++|.
T Consensus 266 FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~ 343 (482)
T PTZ00165 266 FSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPS 343 (482)
T ss_pred EEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCH
Confidence 9999986532 379999999999776 578999999999999999999999998877666678999999999999999
Q ss_pred HHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCC
Q 010230 306 TIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHD 385 (514)
Q Consensus 306 ~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (514)
+++++|.+++++.
T Consensus 344 ~~~~~i~~~i~~~------------------------------------------------------------------- 356 (482)
T PTZ00165 344 SVINPLLEKIPLE------------------------------------------------------------------- 356 (482)
T ss_pred HHHHHHHHHcCCc-------------------------------------------------------------------
Confidence 9999999988653
Q ss_pred cccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCE-----EEEeCccccee
Q 010230 386 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGK-----IFDLTPDQYIL 460 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~-----~~~i~~~~y~~ 460 (514)
.+|+.+..+|+|+|+|+|. +|.++|++|++
T Consensus 357 ---------------------------------------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~ 391 (482)
T PTZ00165 357 ---------------------------------------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVI 391 (482)
T ss_pred ---------------------------------------------ccccccccCCceEEEECCCCCceEEEEEchHHeee
Confidence 2677777899999999864 89999999999
Q ss_pred eec--CCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010230 461 KVG--EGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 461 ~~~--~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+.. ..+.+.|+++|+..+.+.+.++.||||++|||++|+|||.+|+|||||+++
T Consensus 392 ~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 392 EEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred ecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeec
Confidence 742 334568999999887665566889999999999999999999999999974
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.2e-61 Score=492.37 Aligned_cols=324 Identities=55% Similarity=1.036 Sum_probs=285.1
Q ss_pred eccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCC-CcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEE
Q 010230 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFS 162 (514)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~ 162 (514)
|+.|.+|+++|.||||||++.|++||||+++||++..|.. ...|..++.|+|++|+||+..++.+.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4568999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCc
Q 010230 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (514)
Q Consensus 163 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G 242 (514)
+|+|+||+..++++.||+++...+..+....++||||||++..+.....|++++|++||.|.+++||+||.+..+....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998776544555678999999999888767788999999999999999999998754333479
Q ss_pred EEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccc
Q 010230 243 EIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVS 322 (514)
Q Consensus 243 ~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~ 322 (514)
+|+|||+|++++.|++.|+|+.+..+|.|++++|.|++... .......++|||||+++++|++++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999988899999999999987643 2345678999999999999999999999988643
Q ss_pred cchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhh
Q 010230 323 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQL 402 (514)
Q Consensus 323 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCC
Q 010230 403 KQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPP 482 (514)
Q Consensus 403 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~ 482 (514)
+...+.|.++|+....+|+|+|+|+|+.|.|+|++|+++........|++.|+..+.+.+
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 012356889999888899999999999999999999997655445689999988765544
Q ss_pred CCCeeeeChhhhcCeEEEEECCCCeEEEEE
Q 010230 483 RGPLWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 483 ~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
.++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 556899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=9.2e-62 Score=491.05 Aligned_cols=317 Identities=85% Similarity=1.458 Sum_probs=283.3
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEE
Q 010230 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G 159 (514)
+||.|+.+.+|+++|+||||||++.|++||||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999965568998999999999999999999999999999999
Q ss_pred EEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010230 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (514)
Q Consensus 160 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 239 (514)
.+++|+|++|+..++++.||++....+..+....++||||||++..+..+..|++.+|++||+|++++||+||.+..+..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998776655666678999999999887767788999999999999999999998754333
Q ss_pred CCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCcc
Q 010230 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (514)
Q Consensus 240 ~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~ 319 (514)
..|+|+|||+|++++.|++.|+|+...++|.|.+++|+|++..+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 4799999999999999999999999889999999999999998776666788999999999999998765441
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHH
Q 010230 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEeccc
Q 010230 400 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~ 479 (514)
+.++|+....+|+|+|+|+|+++.|+|++|+++..+.....|+++|++.+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 335788777899999999999999999999988665555789999988765
Q ss_pred CCCCCCeeeeChhhhcCeEEEEECCCCeEEEEE
Q 010230 480 APPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
....++.||||++|||++|+|||++++|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 444556899999999999999999999999996
No 4
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=8e-61 Score=486.19 Aligned_cols=325 Identities=46% Similarity=0.922 Sum_probs=287.4
Q ss_pred ceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCC-CcccCCCCcccCCCCCcceeCCceEEEEeccceEEEE
Q 010230 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (514)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~ 160 (514)
|.|+.+.+|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 467889999999999999999999999999999999999963 2478889999999999999999999999999999999
Q ss_pred EEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010230 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (514)
Q Consensus 161 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
+++|+|++++..+. +.||++.......+....++||||||++..+..+..|++++|++||.|++++||+||.+.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998884 88999887654445556789999999988776677889999999999999999999987643344
Q ss_pred CcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccc
Q 010230 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (514)
Q Consensus 241 ~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~ 320 (514)
.|.|+|||+|+++|.|+++|+|+...++|.|++++++++++.+. ......++|||||+++++|.+++++|++++++..
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~- 237 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAKE- 237 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999988999999999999998764 3456789999999999999999999999987651
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHH
Q 010230 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 238 -------------------------------------------------------------------------------- 237 (326)
T cd05487 238 -------------------------------------------------------------------------------- 237 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccC
Q 010230 401 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
..+.|.+||+....+|.|+|+|++..++|++++|+++..+.....|+++|+..+.+
T Consensus 238 ------------------------~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 238 ------------------------RLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred ------------------------cCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 13468899998888999999999999999999999986655567899999987654
Q ss_pred CCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 481 PPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
++.++.||||++|||++|+|||++++|||||+|
T Consensus 294 ~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 294 PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 445568999999999999999999999999986
No 5
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.2e-61 Score=487.13 Aligned_cols=316 Identities=49% Similarity=0.931 Sum_probs=280.4
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEEEEC
Q 010230 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIG 169 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ig 169 (514)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 799999999999999999999999999999996 4589989999999999999999999999999999999999999999
Q ss_pred ceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECcc
Q 010230 170 DLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGM 249 (514)
Q Consensus 170 ~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~ 249 (514)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|+.++||+||.+.++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999887665445556789999999998876677889999999999999999999987543334799999999
Q ss_pred CCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhh
Q 010230 250 DPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVV 329 (514)
Q Consensus 250 d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~ 329 (514)
|++++.|++.|+|+.+.++|.|.+++|.|+++.+. ......++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998888654
Q ss_pred hhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHH
Q 010230 330 SQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQE 409 (514)
Q Consensus 330 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (514)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeee
Q 010230 410 RILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWIL 489 (514)
Q Consensus 410 ~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iL 489 (514)
...+.|.++|+....+|+|+|+|+|+.++|+|++|++.....+...|+++|+..++.+..++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998788999999999999999999999875333446899999887654445568999
Q ss_pred ChhhhcCeEEEEECCCCeEEEEE
Q 010230 490 GDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 490 G~~fl~~~y~vfD~~~~riGfa~ 512 (514)
|++|||++|+|||++++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.3e-60 Score=481.93 Aligned_cols=327 Identities=58% Similarity=1.045 Sum_probs=289.4
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCC-CcccCCCCcccCCCCCcceeCCceEEEEeccceEE
Q 010230 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~ 158 (514)
.||.|+.+.+|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.+.+.|++|++.
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCC
Q 010230 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|++++++..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+..+.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999876654455567899999999988766777899999999999999999999876543
Q ss_pred CCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCc
Q 010230 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (514)
Q Consensus 239 ~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~ 318 (514)
...|+|+|||+|++++.|+++|+|+...++|.|.++++.+++..+. .....++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~--~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFC--SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeec--CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 3579999999999999999999999989999999999999998763 45678999999999999999999999988654
Q ss_pred cccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHH
Q 010230 319 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecc
Q 010230 399 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...+.|.++|+....+|.|+|+|+|+++.|+|++|+++..+.+...|+++|+..+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 0124688999987789999999999999999999999876555578999998766
Q ss_pred cCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEE
Q 010230 479 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
+++..++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5444556899999999999999999999999984
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=7.9e-60 Score=477.20 Aligned_cols=316 Identities=47% Similarity=0.895 Sum_probs=281.1
Q ss_pred eceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEE
Q 010230 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGF 160 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~ 160 (514)
||.|+.+.+|+++|.||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999996 4579888999999999999999999999999999999
Q ss_pred EEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010230 161 FSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (514)
Q Consensus 161 ~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+..+ .
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~--~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQ--Q 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCC--C
Confidence 99999999999999999999987654322334579999999988776677889999999999999999999987642 3
Q ss_pred CcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccc
Q 010230 241 GGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (514)
Q Consensus 241 ~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~ 320 (514)
.|+|+|||+|++++.|+++|+|+....+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|++++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 69999999999999999999999988999999999999999875 2346789999999999999999999999886540
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHH
Q 010230 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccC
Q 010230 401 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
...+.|.++|+....+|.|+|+|+|++|.|||++|+.+. .+.|++.|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 123568899998888999999999999999999999864 368999887532
Q ss_pred CCCCCeeeeChhhhcCeEEEEECCCCeEEEEE
Q 010230 481 PPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
..+.||||++|||++|+|||++++||||||
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 245799999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.9e-59 Score=474.97 Aligned_cols=320 Identities=50% Similarity=0.914 Sum_probs=283.6
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEE
Q 010230 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G 159 (514)
+||.|+.+.+|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|++++|+|++..++.+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5889999999999999999999999999999999999999996 457988899999999999999999999999999999
Q ss_pred EEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010230 160 FFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (514)
Q Consensus 160 ~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 239 (514)
.+++|++++++..++++.|+++....+..+.....+||||||++..+.....|.+.+|++||.|++++||+||.+.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998765544445567999999999887666678889999999999999999999753 2
Q ss_pred CCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCcc
Q 010230 240 EGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (514)
Q Consensus 240 ~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~ 319 (514)
..|.|+|||+|++++.|+++|+|+...++|.|++++|+|++..+.. ....++|||||+++++|++++++|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987743 45679999999999999999999999886540
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHH
Q 010230 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEeccc
Q 010230 400 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~ 479 (514)
...+.|.++|+....+|.|+|+|+|+++.|||++|+++.. +.|++.+.+.+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEVS----GSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecCC----CeEEEEEEECcC
Confidence 1245688999987789999999999999999999998532 579999987654
Q ss_pred CCCCCCeeeeChhhhcCeEEEEECCCCeEEEEE
Q 010230 480 APPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
+...++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 433445799999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.1e-59 Score=473.19 Aligned_cols=317 Identities=45% Similarity=0.884 Sum_probs=280.3
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEE
Q 010230 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHV 166 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v 166 (514)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+||+..++.+++.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 468999999999999999999999999999999997 4579988999999999999999999999999999999999999
Q ss_pred EECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEE
Q 010230 167 KIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (514)
Q Consensus 167 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 246 (514)
++|+..++++.||++....+..+.....+||||||++..+....++++++|+++|.|++++||+||.+.. ....|.|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999765544444567999999998887767788999999999999999999998753 223699999
Q ss_pred CccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchh
Q 010230 247 GGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECK 326 (514)
Q Consensus 247 Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~ 326 (514)
||+|++++.|++.|+|+...++|.|++++|.|++..+..+..+..++|||||+++++|++++++|++.++++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~------- 231 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQ------- 231 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCcc-------
Confidence 9999999999999999998899999999999999887655566789999999999999999999999887651
Q ss_pred hhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhh
Q 010230 327 AVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQ 406 (514)
Q Consensus 327 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (514)
T Consensus 232 -------------------------------------------------------------------------------- 231 (318)
T cd05477 232 -------------------------------------------------------------------------------- 231 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCC-CC
Q 010230 407 TQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPR-GP 485 (514)
Q Consensus 407 ~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~-~~ 485 (514)
...+.|.++|+....+|.|+|+|+|+++.|++++|+... .+.|+++|+....+... .+
T Consensus 232 -----------------~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 232 -----------------DQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred -----------------ccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 123568999998888999999999999999999999863 35899888765432222 24
Q ss_pred eeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 486 LWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.1e-58 Score=483.49 Aligned_cols=324 Identities=35% Similarity=0.661 Sum_probs=280.2
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEecc
Q 010230 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
.....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.+.+.|++
T Consensus 125 ~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~ 203 (453)
T PTZ00147 125 SEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMNYVS 203 (453)
T ss_pred CCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEEeCC
Confidence 467889999999999999999999999999999999999999999996 4589989999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecccEEEEEEeeCCc--ccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEe
Q 010230 155 GAISGFFSEDHVKIGDLVVKDQEFIEATREPSL--TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF 232 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~--~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l 232 (514)
|++.|.+++|+|++|+.+++ ..|+++....+. .+....++||||||++..+.....|++.+|++||.|++++||+||
T Consensus 204 GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L 282 (453)
T PTZ00147 204 GTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYL 282 (453)
T ss_pred CCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEe
Confidence 99999999999999999988 568887765432 133456899999999988777778899999999999999999999
Q ss_pred cCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHH
Q 010230 233 NRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 233 ~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
.+.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.++ +.+++.. .....++|||||+++++|+++++++.
T Consensus 283 ~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ai~ 355 (453)
T PTZ00147 283 PPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLNKFV 355 (453)
T ss_pred cCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHHHHH
Confidence 8643 237999999999999999999999988899999998 4776643 24578999999999999999999999
Q ss_pred HHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhH
Q 010230 313 HAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCE 392 (514)
Q Consensus 313 ~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++++..
T Consensus 356 ~~l~~~~------------------------------------------------------------------------- 362 (453)
T PTZ00147 356 ESLDVFK------------------------------------------------------------------------- 362 (453)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 9886541
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeee
Q 010230 393 MAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+....+...+.|++
T Consensus 363 -----------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~ 411 (453)
T PTZ00147 363 -----------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCML 411 (453)
T ss_pred -----------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEE
Confidence 0 113457889986 579999999999999999999998655444568999
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010230 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+|++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 412 ~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 412 NIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 8886542 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.4e-58 Score=476.22 Aligned_cols=324 Identities=33% Similarity=0.672 Sum_probs=277.9
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEecc
Q 010230 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
.....+||.|+.+.+|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++
T Consensus 124 ~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~ 202 (450)
T PTZ00013 124 SENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVDITYGS 202 (450)
T ss_pred cCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEEEEECC
Confidence 466789999999999999999999999999999999999999999996 4579989999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecccEEEEEEeeCC--cccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEe
Q 010230 155 GAISGFFSEDHVKIGDLVVKDQEFIEATREPS--LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWF 232 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~--~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l 232 (514)
|++.|.+++|+|++|+.+++ ..|+++..... ..+....++||||||++..+.....|++++|++||.|++++||+||
T Consensus 203 Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L 281 (450)
T PTZ00013 203 GTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 281 (450)
T ss_pred ceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEe
Confidence 99999999999999999987 57887765432 1233456799999999988766778899999999999999999999
Q ss_pred cCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHH
Q 010230 233 NRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 233 ~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
.+.. ...|.|+|||+|+++|.|++.|+|+....+|.|.++ +.++.... ....++|||||+++++|+++++++.
T Consensus 282 ~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~~~~i~ 354 (450)
T PTZ00013 282 PVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEFLNKFF 354 (450)
T ss_pred cCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHHHHHHH
Confidence 8643 237999999999999999999999998899999998 66654332 3567999999999999999999999
Q ss_pred HHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhH
Q 010230 313 HAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCE 392 (514)
Q Consensus 313 ~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++++..
T Consensus 355 ~~l~~~~------------------------------------------------------------------------- 361 (450)
T PTZ00013 355 ANLNVIK------------------------------------------------------------------------- 361 (450)
T ss_pred HHhCCee-------------------------------------------------------------------------
Confidence 9886541
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeee
Q 010230 393 MAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
. ...+.|.++|+. ..+|+|+|.|+|.+++|+|++|+....+...+.|++
T Consensus 362 -----------------------------~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~ 410 (450)
T PTZ00013 362 -----------------------------V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMI 410 (450)
T ss_pred -----------------------------c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEE
Confidence 0 113458889985 578999999999999999999997644333468999
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010230 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.+.+.+. .++.||||++|||++|+|||++++|||||+++
T Consensus 411 ~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 411 TMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred EEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 9876532 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.9e-55 Score=440.91 Aligned_cols=316 Identities=39% Similarity=0.741 Sum_probs=279.9
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEEEE
Q 010230 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKI 168 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~i 168 (514)
+|+++|+||||+|+++|++||||+++||++..|..+..|.....|++++|+|++..++.+.+.|++|+++|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999974336788899999999999999999999999999999999999999
Q ss_pred CceeecccEEEEEEeeCCcccccccceeeeecccccccCCC-CCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEEC
Q 010230 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGK-AVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (514)
Q Consensus 169 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~-~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (514)
++..+.++.||++....+..+....++||||||++..+... ..+++++|+++|+|++++||++|.+.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876554566788999999988776554 778999999999999999999999874 347999999
Q ss_pred ccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhh
Q 010230 248 GMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKA 327 (514)
Q Consensus 248 g~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~ 327 (514)
|+|++++.|+++|+|+...++|.+.+++|.+++... .......++||||++++++|.+++++|++.+++...
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~------- 230 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS------- 230 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE-------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhccccc-------
Confidence 999999999999999999999999999999999933 234557799999999999999999999999987610
Q ss_pred hhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhh
Q 010230 328 VVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQT 407 (514)
Q Consensus 328 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (514)
T Consensus 231 -------------------------------------------------------------------------------- 230 (317)
T PF00026_consen 231 -------------------------------------------------------------------------------- 230 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCee
Q 010230 408 QERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLW 487 (514)
Q Consensus 408 ~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~ 487 (514)
.+.|.++|+....+|.|+|+|++.+++|+|++|+.+........|++.|..++. ....+.+
T Consensus 231 ------------------~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 231 ------------------DGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp ------------------CSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred ------------------ceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 156899999877899999999999999999999998877655689999998654 3455789
Q ss_pred eeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 488 ILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 488 iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
|||.+|||++|++||++++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5e-51 Score=405.41 Aligned_cols=219 Identities=35% Similarity=0.528 Sum_probs=191.8
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCccee-CCceEEEEeccce-EEEEEEEEEEE
Q 010230 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSEDHVK 167 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~~~Y~~G~-~~G~~~~D~v~ 167 (514)
|+++|+||||||++.|++||||+++||++..|. ...|..+..|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999996 33455677899999999987 4789999999997 89999999999
Q ss_pred ECceeecccEEEEEEeeCCcccccccceeeeecccccccCC---CCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEE
Q 010230 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEI 244 (514)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~---~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L 244 (514)
||+..++++.||+++......+....++||||||++..+.. ...+++++|++|+. +++||+||.+.. .|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~~----~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKAA----PGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCCC----CcEE
Confidence 99999999999999887654445567899999999876542 35678999999965 799999998632 7999
Q ss_pred EECccCCCCCccceeEEeccC-ccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhc
Q 010230 245 VFGGMDPDHYKGEHTYVPVTQ-KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316 (514)
Q Consensus 245 ~fGg~d~~~~~g~l~~~p~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~ 316 (514)
+|||+|++++.|+++|+|+.. .++|.|++++|.|++.... ......++|||||+++++|++++++|.+++.
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 999999999999999999976 7899999999999987442 3467889999999999999999999999884
No 14
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.9e-50 Score=420.13 Aligned_cols=304 Identities=22% Similarity=0.369 Sum_probs=236.6
Q ss_pred cCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccC--CCCcccCCCCCcceeCC------------------
Q 010230 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKNG------------------ 145 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~------------------ 145 (514)
.+.+|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 3678999999999999999999999999999999996 676 45799999999998743
Q ss_pred --ceEEEEeccce-EEEEEEEEEEEECc-----eeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHH
Q 010230 146 --KSADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNM 217 (514)
Q Consensus 146 --~~~~~~Y~~G~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l 217 (514)
|.|.+.|++|+ +.|.+++|+++|++ ..++++.|||+....+. |. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 46889999999876542 32 257899999998766 56666
Q ss_pred HHcCCCCCCEEEEEecCCCC-CCCCcEEEECccCCCCCcc-ceeEEeccC---ccceEEEeceEEEcCeeeeeec-----
Q 010230 218 VNQGLVNEPVFSFWFNRNAD-EEEGGEIVFGGMDPDHYKG-EHTYVPVTQ---KGYWQFDMGDVMIDGQTTGFCA----- 287 (514)
Q Consensus 218 ~~qg~i~~~~FSl~l~~~~~-~~~~G~L~fGg~d~~~~~g-~l~~~p~~~---~~~w~v~l~~i~v~~~~~~~~~----- 287 (514)
..+ +. ++||+||.+..+ ....|.|+||+. .++.+ .+.|+|+.. ..+|.|.+++|+||++.+.++.
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 44 599999975322 234799999984 44544 488999863 4689999999999998876432
Q ss_pred -CCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCccc
Q 010230 288 -GGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSM 366 (514)
Q Consensus 288 -~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (514)
+...+||||||++++||+++|++|.+++...- ... +
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~----------------------~~~-~-------------------- 341 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAI----------------------GGE-R-------------------- 341 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHh----------------------ccc-c--------------------
Confidence 23579999999999999999999988875430 000 0
Q ss_pred ccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCC---CCCCcEE
Q 010230 367 GIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL---SSLPIVS 443 (514)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~---~~~P~i~ 443 (514)
... ...+..+|... ..+|.|+
T Consensus 342 -------------------------------------------------------~~~-~~~~~~~C~~~~~~~~~P~i~ 365 (431)
T PLN03146 342 -------------------------------------------------------VSD-PQGLLSLCYSSTSDIKLPIIT 365 (431)
T ss_pred -------------------------------------------------------CCC-CCCCCCccccCCCCCCCCeEE
Confidence 000 00011233221 3689999
Q ss_pred EEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 444 FTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 444 f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
|+|+|+++.|+|++|++...++ ..|+..+. ..+.||||+.|||++|++||++++|||||++
T Consensus 366 ~~F~Ga~~~l~~~~~~~~~~~~--~~Cl~~~~-------~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 366 AHFTGADVKLQPLNTFVKVSED--LVCFAMIP-------TSSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EEECCCeeecCcceeEEEcCCC--cEEEEEec-------CCCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999999999999976543 67985332 1236999999999999999999999999986
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.2e-50 Score=413.62 Aligned_cols=315 Identities=29% Similarity=0.476 Sum_probs=246.2
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEEE
Q 010230 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ 167 (514)
..|+++|+||||+|+|.|+|||||+++||+|..| |..++.|+|++|+|++..++.+++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~-----~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPH-----PFIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCC-----ccccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 4699999999999999999999999999999877 33467899999999999999999999999999999999999
Q ss_pred ECceeecccEE----EEEEeeCCcccccccceeeeecccccccC--CCCCcHHHHHHHcCCCCCCEEEEEecCCC-----
Q 010230 168 IGDLVVKDQEF----IEATREPSLTFLLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRNA----- 236 (514)
Q Consensus 168 ig~~~~~~~~f----g~~~~~~~~~~~~~~~~GilGLg~~~~s~--~~~~~~~~~l~~qg~i~~~~FSl~l~~~~----- 236 (514)
|++. .++.| +++....+..+....++||||||++..+. ....+++++|++|+.+ .++||+||+...
T Consensus 77 ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~ 153 (364)
T cd05473 77 IPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNG 153 (364)
T ss_pred ECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccc
Confidence 9863 23333 44433332111223579999999998764 2357899999999987 579999985321
Q ss_pred --CCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecC---CceEEEcCCCCCcccCHHHHHHH
Q 010230 237 --DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 237 --~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
.....|.|+|||+|++++.|++.|+|+....+|.|.+++|.|++..+..... ...++|||||+++++|++++++|
T Consensus 154 ~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l 233 (364)
T cd05473 154 SASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAA 233 (364)
T ss_pred ccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHH
Confidence 1224799999999999999999999999889999999999999988764321 24699999999999999999999
Q ss_pred HHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchh
Q 010230 312 NHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTC 391 (514)
Q Consensus 312 ~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.++++++.. .+
T Consensus 234 ~~~l~~~~~------------------------~~--------------------------------------------- 244 (364)
T cd05473 234 VDAIKAASL------------------------IE--------------------------------------------- 244 (364)
T ss_pred HHHHHhhcc------------------------cc---------------------------------------------
Confidence 999976510 00
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCC-CCCeeecCCCCC-----CCCcEEEEECC------EEEEeCcccce
Q 010230 392 EMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP-MGESAVDCSRLS-----SLPIVSFTIGG------KIFDLTPDQYI 459 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~i~f~~gg------~~~~i~~~~y~ 459 (514)
..+.. .+.+.++|.... .+|+|+|+|+| ..+.|+|++|+
T Consensus 245 -----------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~ 295 (364)
T cd05473 245 -----------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYL 295 (364)
T ss_pred -----------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhh
Confidence 00000 122356786432 58999999964 47899999999
Q ss_pred eeecC-CCCceeee-eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010230 460 LKVGE-GDAAQCIS-GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 460 ~~~~~-~~~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
..... .....|+. ++. ...+.||||+.|||++|+|||++++|||||+++
T Consensus 296 ~~~~~~~~~~~C~~~~~~------~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 296 RPVEDHGTQLDCYKFAIS------QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hhhccCCCcceeeEEeee------cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 86432 22467974 221 123469999999999999999999999999874
No 16
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-49 Score=410.66 Aligned_cols=320 Identities=43% Similarity=0.774 Sum_probs=263.5
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCC-CCc-ccCCCCCcceeCCce--------
Q 010230 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYF-HSK-YRSGRSSTYKKNGKS-------- 147 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~-~~~-y~~~~SsT~~~~~~~-------- 147 (514)
...++..+.+.+|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~ 112 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLP 112 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCccccccc
Confidence 3456667778899999999999999999999999999999999952 6864 444 999999999997743
Q ss_pred ----------EEEEeccc-eEEEEEEEEEEEECc---eeecccEEEEEEeeCCccccc-ccceeeeecccccccCCCCCc
Q 010230 148 ----------ADIHYGTG-AISGFFSEDHVKIGD---LVVKDQEFIEATREPSLTFLL-AKFDGILGLGFQEISVGKAVP 212 (514)
Q Consensus 148 ----------~~~~Y~~G-~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~-~~~~GilGLg~~~~s~~~~~~ 212 (514)
|.+.|++| ++.|.+++|+|++++ ..++++.|||+....+. +.. ..++||||||+...+....
T Consensus 113 ~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q-- 189 (398)
T KOG1339|consen 113 QSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQ-- 189 (398)
T ss_pred cCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceee--
Confidence 99999995 589999999999998 78888999999988765 444 6789999999999884433
Q ss_pred HHHHHHHcCCCCCCEEEEEecCCCCC-CCCcEEEECccCCCCCccceeEEeccCcc--ceEEEeceEEEcCee----eee
Q 010230 213 VWYNMVNQGLVNEPVFSFWFNRNADE-EEGGEIVFGGMDPDHYKGEHTYVPVTQKG--YWQFDMGDVMIDGQT----TGF 285 (514)
Q Consensus 213 ~~~~l~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGg~d~~~~~g~l~~~p~~~~~--~w~v~l~~i~v~~~~----~~~ 285 (514)
+...+.. .++||+||.+.... ...|.|+||++|+.++.+++.|+|+.... +|.+.+.+|.|+++. ..+
T Consensus 190 ----~~~~~~~-~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 190 ----LPSFYNA-INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred ----cccccCC-ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 3332222 23899999987533 24899999999999999999999998877 999999999999843 222
Q ss_pred ecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcc
Q 010230 286 CAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVS 365 (514)
Q Consensus 286 ~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
..+...+|+||||+++++|.++|++|.++++++.
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~---------------------------------------------- 298 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV---------------------------------------------- 298 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe----------------------------------------------
Confidence 3336889999999999999999999999998750
Q ss_pred cccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCC----CCc
Q 010230 366 MGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSS----LPI 441 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~----~P~ 441 (514)
......+.+.++|..... +|.
T Consensus 299 -------------------------------------------------------~~~~~~~~~~~~C~~~~~~~~~~P~ 323 (398)
T KOG1339|consen 299 -------------------------------------------------------SVVGTDGEYFVPCFSISTSGVKLPD 323 (398)
T ss_pred -------------------------------------------------------eccccCCceeeecccCCCCcccCCc
Confidence 001234567788887766 999
Q ss_pred EEEEEC-CEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECC-CCeEEEEEc
Q 010230 442 VSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYS-NMRVGFAEA 513 (514)
Q Consensus 442 i~f~~g-g~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~-~~riGfa~a 513 (514)
|+|+|+ |+.|.+++++|+++....... |.+.+...+.. +.||||+.|+|+++++||.. ++|||||++
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 999998 899999999999987755222 99888754321 68999999999999999999 999999985
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.8e-49 Score=401.45 Aligned_cols=282 Identities=29% Similarity=0.466 Sum_probs=234.9
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccC--CCCcccCCCCCcceeC----------------CceEE
Q 010230 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYRSGRSSTYKKN----------------GKSAD 149 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~----------------~~~~~ 149 (514)
+.|+++|+||||||++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .|.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 47999999999999999999999999999999996 464 3578999999999863 57899
Q ss_pred EEeccce-EEEEEEEEEEEECceeec-------ccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcC
Q 010230 150 IHYGTGA-ISGFFSEDHVKIGDLVVK-------DQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (514)
Q Consensus 150 ~~Y~~G~-~~G~~~~D~v~ig~~~~~-------~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg 221 (514)
+.|++|+ +.|.+++|+|+|++..++ ++.|||+....+. |.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNL-FLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCc-ccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999986653 4679998876542 4455679999999987542 223455577777
Q ss_pred CCCC--CEEEEEecCCCCCCCCcEEEECccCCCCCc----------cceeEEeccCccceEEEeceEEEcCee-eeeecC
Q 010230 222 LVNE--PVFSFWFNRNADEEEGGEIVFGGMDPDHYK----------GEHTYVPVTQKGYWQFDMGDVMIDGQT-TGFCAG 288 (514)
Q Consensus 222 ~i~~--~~FSl~l~~~~~~~~~G~L~fGg~d~~~~~----------g~l~~~p~~~~~~w~v~l~~i~v~~~~-~~~~~~ 288 (514)
.+.. ++||+||++. .|.|+|||+|++++. +++.|+|+....+|.|.+++|+++++. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7664 9999999864 699999999999987 789999998889999999999999886 112346
Q ss_pred CceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCccccc
Q 010230 289 GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGI 368 (514)
Q Consensus 289 ~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (514)
...++|||||++++||++++++|.+
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~------------------------------------------------------- 255 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINN------------------------------------------------------- 255 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHh-------------------------------------------------------
Confidence 7789999999999999999988754
Q ss_pred ccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEEC-
Q 010230 369 ESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG- 447 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~g- 447 (514)
.+|+|+|.|+
T Consensus 256 ---------------------------------------------------------------------~~P~i~~~f~~ 266 (326)
T cd06096 256 ---------------------------------------------------------------------FFPTITIIFEN 266 (326)
T ss_pred ---------------------------------------------------------------------hcCcEEEEEcC
Confidence 1289999998
Q ss_pred CEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 448 GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 448 g~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
|++++++|++|+++.... .|...+.. ..+.+|||++|||++|+|||++++|||||++
T Consensus 267 g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~ 323 (326)
T cd06096 267 NLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVES 323 (326)
T ss_pred CcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcC
Confidence 899999999999875433 46655542 2357999999999999999999999999987
No 18
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.6e-48 Score=390.78 Aligned_cols=278 Identities=30% Similarity=0.546 Sum_probs=239.9
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccc-eEEEEEEEEEEE
Q 010230 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDHVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G-~~~G~~~~D~v~ 167 (514)
.|+++|.||||+|++.|++||||+++||+ .+++.|++| .+.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 59999999999999999999999999996 678899996 589999999999
Q ss_pred ECceeecccEEEEEEeeCCcccccccceeeeecccccccC-----CCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCc
Q 010230 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV-----GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGG 242 (514)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~-----~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G 242 (514)
+++..++++.||++.... ..+||||||++..+. ...++++++|++||.|++++||+||.+.+ ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 358999999988743 23457999999999999999999998753 2379
Q ss_pred EEEECccCCCCCccceeEEeccCc------cceEEEeceEEEcCeeee--eecCCceEEEcCCCCCcccCHHHHHHHHHH
Q 010230 243 EIVFGGMDPDHYKGEHTYVPVTQK------GYWQFDMGDVMIDGQTTG--FCAGGCAAIADSGTSLLAGPTTIITQVNHA 314 (514)
Q Consensus 243 ~L~fGg~d~~~~~g~l~~~p~~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~ 314 (514)
.|+|||+|+.++.|++.|+|+... .+|.|++++|.+++.... .......++|||||+++++|.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 689999999999998753 234567899999999999999999999999
Q ss_pred hcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHH
Q 010230 315 IGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMA 394 (514)
Q Consensus 315 l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+++...
T Consensus 204 ~~~~~~-------------------------------------------------------------------------- 209 (295)
T cd05474 204 LGATYD-------------------------------------------------------------------------- 209 (295)
T ss_pred hCCEEc--------------------------------------------------------------------------
Confidence 976510
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecC--CCCceeee
Q 010230 395 VVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGE--GDAAQCIS 472 (514)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~--~~~~~C~~ 472 (514)
...+.|.++|+.... |+|+|+|+|.++.||+++|+++... .....|++
T Consensus 210 -----------------------------~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 210 -----------------------------SDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred -----------------------------CCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 113568899997666 9999999999999999999987542 34578998
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
.|+..+ .+.||||.+|||++|++||++++|||||+|
T Consensus 260 ~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 260 GIQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 888543 157999999999999999999999999997
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=6.3e-48 Score=387.20 Aligned_cols=287 Identities=25% Similarity=0.443 Sum_probs=223.4
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEEEEEEE
Q 010230 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~~D~v~ 167 (514)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999986544 68999999998 58999999999
Q ss_pred ECce-eecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEE
Q 010230 168 IGDL-VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVF 246 (514)
Q Consensus 168 ig~~-~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 246 (514)
|++. .++++.|||+...++. + ...+||||||++..+ +..++..+ .+++||+||.+.. ....|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8899999999876542 2 267999999987665 44555544 2589999998743 133799999
Q ss_pred CccCCCCCccceeEEeccCc----cceEEEeceEEEcCeeeeee---cCCceEEEcCCCCCcccCHHHHHHHHHHhcCcc
Q 010230 247 GGMDPDHYKGEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC---AGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (514)
Q Consensus 247 Gg~d~~~~~g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~---~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~ 319 (514)
||+|+. .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++.++.
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999653 68999999999999987642 245689999999999999999999999986540
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHH
Q 010230 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
. . ..... +
T Consensus 202 ~----------~------------~~~~~-----~--------------------------------------------- 209 (299)
T cd05472 202 A----------A------------YPRAP-----G--------------------------------------------- 209 (299)
T ss_pred c----------c------------CCCCC-----C---------------------------------------------
Confidence 0 0 00000 0
Q ss_pred HhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCCCceeeeeeEecc
Q 010230 400 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~g-g~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
....+.|+.. +|.....+|+|+|+|+ ++++.|+|++|++... .....|+. +...+
T Consensus 210 -------------~~~~~~C~~~---------~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~ 265 (299)
T cd05472 210 -------------FSILDTCYDL---------SGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS 265 (299)
T ss_pred -------------CCCCCccCcC---------CCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC
Confidence 0000123322 2333357999999997 8999999999998432 23468974 44321
Q ss_pred cCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 479 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 ---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 ---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred ---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 23457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.4e-45 Score=366.56 Aligned_cols=227 Identities=47% Similarity=0.859 Sum_probs=199.1
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCc--ccCCCCCcceeCCceEEEEeccceEEEEEEEEEEE
Q 010230 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSK--YRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVK 167 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~--y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ 167 (514)
|+++|.||+|+|++.|++||||+++||+|..|.. ..|..... |++..|+++....+.+.+.|++|++.|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTS-CSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCc-cccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 7899999999999999999999999999999962 22333333 89999999999999999999999999999999999
Q ss_pred ECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEEC
Q 010230 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFG 247 (514)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 247 (514)
|++..++++.||++..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 244567899999999987665677899999999999999999999985312348999999
Q ss_pred ccCCCCCccceeEEeccC--ccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCc
Q 010230 248 GMDPDHYKGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (514)
Q Consensus 248 g~d~~~~~g~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~ 318 (514)
|+|+.++.+++.|+|+.. ..+|.|.+++|.+++...........++||||++++++|.+++++|++++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999987 78999999999999974323456789999999999999999999999999876
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.4e-45 Score=359.54 Aligned_cols=247 Identities=28% Similarity=0.513 Sum_probs=209.6
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEEEEEEE
Q 010230 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~~D~v~ 167 (514)
+|+++|+||||||++.|++||||+++||+| |.+.+.|++|+ +.|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999974 46789999775 89999999999
Q ss_pred ECce--eecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEE
Q 010230 168 IGDL--VVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIV 245 (514)
Q Consensus 168 ig~~--~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 245 (514)
|++. .++++.|||+..... +.....+||||||++..+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998764 455678999999987654 677887776 89999998753233489999
Q ss_pred ECccCCCCCccceeEEeccC----ccceEEEeceEEEcCeeeee--------ecCCceEEEcCCCCCcccCHHHHHHHHH
Q 010230 246 FGGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDGQTTGF--------CAGGCAAIADSGTSLLAGPTTIITQVNH 313 (514)
Q Consensus 246 fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aiiDSGtt~~~lP~~~~~~l~~ 313 (514)
|||+|+. +.+++.|+|+.. .++|.|++++|+|+++.+.+ ......++|||||+++++|++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~------- 193 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP------- 193 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc-------
Confidence 9999999 999999999975 57999999999999988752 235678999999999999952
Q ss_pred HhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHH
Q 010230 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 393 (514)
Q Consensus 314 ~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
T Consensus 194 -------------------------------------------------------------------------------- 193 (265)
T cd05476 194 -------------------------------------------------------------------------------- 193 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCCCceeee
Q 010230 394 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~g-g~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
.+|.|+|+|+ ++++.|++++|+.... ....|+.
T Consensus 194 --------------------------------------------~~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~ 227 (265)
T cd05476 194 --------------------------------------------AYPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA 227 (265)
T ss_pred --------------------------------------------ccCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE
Confidence 1278999998 8999999999998643 3368975
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
.+. . ...+.||||++|||++|++||++++|||||++
T Consensus 228 ~~~-~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~ 263 (265)
T cd05476 228 ILS-S----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPA 263 (265)
T ss_pred Eec-C----CCCCcEEEChhhcccEEEEEECCCCEEeeecC
Confidence 332 1 24568999999999999999999999999987
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.2e-44 Score=358.35 Aligned_cols=258 Identities=22% Similarity=0.421 Sum_probs=212.4
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCceeeeCC-CCCCCcccCCCCcccCCCCCcceeCCceEEEEeccc-eEEEEEEEEE
Q 010230 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-KCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG-AISGFFSEDH 165 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~-~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G-~~~G~~~~D~ 165 (514)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.+.|++| ++.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 36999999999999999999999999999984 564 45 46899999965 5899999999
Q ss_pred EEECc----eeecccEEEEEEeeCCcc-cccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010230 166 VKIGD----LVVKDQEFIEATREPSLT-FLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (514)
Q Consensus 166 v~ig~----~~~~~~~fg~~~~~~~~~-~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
|+++. ..++++.|||+....+.. ......+||||||+...+ ++++|.+++.| +++||+||.+..
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s------~~~ql~~~~~i-~~~Fs~~l~~~~---- 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKIS------LPSQLASQGII-KNVIGHCLSSNG---- 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCC------HHHHHHhcCCc-CceEEEEccCCC----
Confidence 99953 577899999997654421 233467999999997654 88999999999 899999998632
Q ss_pred CcEEEECccCCCCCccceeEEeccCc---cceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcC
Q 010230 241 GGEIVFGGMDPDHYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317 (514)
Q Consensus 241 ~G~L~fGg~d~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~ 317 (514)
.|.|+|| |..++.+++.|+|+.+. ++|.|++.+|+|+++.. ......++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 6899998 55667889999999764 79999999999999854 34567899999999999996421
Q ss_pred ccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHH
Q 010230 318 TGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVW 397 (514)
Q Consensus 318 ~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (514)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECC----EEEEeCcccceeeecCCCCceeeee
Q 010230 398 MQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG----KIFDLTPDQYILKVGEGDAAQCISG 473 (514)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg----~~~~i~~~~y~~~~~~~~~~~C~~~ 473 (514)
+|+|+|+|++ ++++|+|++|++.... +..|+..
T Consensus 197 -----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~ 233 (273)
T cd05475 197 -----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGI 233 (273)
T ss_pred -----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEE
Confidence 5789999976 7999999999987543 3579877
Q ss_pred eEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010230 474 FSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 474 i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 234 ~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 234 LNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 654321 224579999999999999999999999999864
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.4e-41 Score=346.34 Aligned_cols=313 Identities=17% Similarity=0.258 Sum_probs=230.2
Q ss_pred ecCCCce-EEEEeeCCCCceeeeCCC----------CCCCcccCCCCcccCCC------CCcceeCCceEEEE-eccce-
Q 010230 96 IGTPPQN-FTVIFDTGSSNLWVPSSK----------CYFSIACYFHSKYRSGR------SSTYKKNGKSADIH-YGTGA- 156 (514)
Q Consensus 96 iGtP~Q~-~~v~~DTGSs~~wv~~~~----------C~~~~~C~~~~~y~~~~------SsT~~~~~~~~~~~-Y~~G~- 156 (514)
+|||-.+ +.|++||||+++||+|.. |. +..|..+..|++.+ ++......|.|... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999997764 43 45676666665542 22233345777654 77885
Q ss_pred EEEEEEEEEEEECc--------eeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEE
Q 010230 157 ISGFFSEDHVKIGD--------LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVF 228 (514)
Q Consensus 157 ~~G~~~~D~v~ig~--------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~F 228 (514)
..|.+++|+++|+. ..++++.|||+.......+ ...++||||||++..+ +..||..++. ..++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lS------l~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLS------LPAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccc------hHHHhhhhcC-CCcce
Confidence 78999999999973 3688999999987532222 2347999999999887 5567776654 46999
Q ss_pred EEEecCCCCCCCCcEEEECccCCCCCc------cceeEEeccCc----cceEEEeceEEEcCeeeeee--------cCCc
Q 010230 229 SFWFNRNADEEEGGEIVFGGMDPDHYK------GEHTYVPVTQK----GYWQFDMGDVMIDGQTTGFC--------AGGC 290 (514)
Q Consensus 229 Sl~l~~~~~~~~~G~L~fGg~d~~~~~------g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~ 290 (514)
|+||.+.. ...|.|+||+.+..++. +++.|+|+... .+|.|++++|+||++.+.++ .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999987774 78999999753 79999999999999987642 2346
Q ss_pred eEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCccccccc
Q 010230 291 AAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIES 370 (514)
Q Consensus 291 ~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (514)
.++|||||++++||+++|++|.+++.++. ..+ ....+.
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~---------~~~~~~----------------------- 268 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARI---------PRVPAA----------------------- 268 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHh----------ccc---------CcCCCC-----------------------
Confidence 79999999999999999999999986540 000 000000
Q ss_pred ccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECC--
Q 010230 371 VVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGG-- 448 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg-- 448 (514)
....+.|+.... ...|+....+|.|+|+|+|
T Consensus 269 ------------------------------------------~~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g 301 (362)
T cd05489 269 ------------------------------------------AVFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGG 301 (362)
T ss_pred ------------------------------------------CCCcCccccCCC-----cCCcccccccceEEEEEeCCC
Confidence 000134555321 1233334689999999975
Q ss_pred EEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010230 449 KIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 449 ~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
+++.|+|++|+++..+ ...|+ +|...+.. .++.||||+.|||++|++||++++|||||++
T Consensus 302 ~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 302 VNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998654 36896 56543321 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.87 E-value=1.1e-21 Score=166.71 Aligned_cols=108 Identities=61% Similarity=0.925 Sum_probs=94.9
Q ss_pred EEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcc-cCCCCCcceeCCceEEEEeccceEEEEEEEEEEEECc
Q 010230 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKY-RSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGD 170 (514)
Q Consensus 92 ~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y-~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ig~ 170 (514)
++|.||||||++.|+|||||+++||++..|. ...|..+..| +|..|++++...+.+.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999986 2334445566 9999999999999999999999999999999999999
Q ss_pred eeecccEEEEEEeeCCcccccccceeeeec
Q 010230 171 LVVKDQEFIEATREPSLTFLLAKFDGILGL 200 (514)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 200 (514)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999886643445578999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=9.9e-21 Score=172.59 Aligned_cols=136 Identities=33% Similarity=0.556 Sum_probs=106.3
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeC----------------------Cce
Q 010230 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKN----------------------GKS 147 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~----------------------~~~ 147 (514)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+.. .|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 2577888888888762 258
Q ss_pred EEEEeccce-EEEEEEEEEEEECc-----eeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcC
Q 010230 148 ADIHYGTGA-ISGFFSEDHVKIGD-----LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQG 221 (514)
Q Consensus 148 ~~~~Y~~G~-~~G~~~~D~v~ig~-----~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg 221 (514)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+. ....+||||||+...+ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~---~~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGL---FYGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTS---STTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccC---CcCCCcccccCCCccc------HHHHHHHh-
Confidence 999999887 79999999999986 46788999999987653 1278999999998877 88899888
Q ss_pred CCCCCEEEEEecCCCCCCCCcEEEECc
Q 010230 222 LVNEPVFSFWFNRNADEEEGGEIVFGG 248 (514)
Q Consensus 222 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 248 (514)
..++||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2233489999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.78 E-value=1.2e-18 Score=158.70 Aligned_cols=153 Identities=22% Similarity=0.380 Sum_probs=104.7
Q ss_pred ceEEEeceEEEcCeeeeeecC-------CceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHh
Q 010230 268 YWQFDMGDVMIDGQTTGFCAG-------GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINML 340 (514)
Q Consensus 268 ~w~v~l~~i~v~~~~~~~~~~-------~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~ 340 (514)
+|.|++.+|+||++.+.++.. ...++|||||++++||+++|++|.+++.+.. ...
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~----------~~~-------- 62 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM----------GAP-------- 62 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH----------HTC--------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh----------hhc--------
Confidence 488999999999999886644 4789999999999999999999999996540 000
Q ss_pred hccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcc
Q 010230 341 LAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCD 420 (514)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 420 (514)
+.. ++.-.....++|+
T Consensus 63 --~~~--------------------------------------------------------------~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 63 --GVS--------------------------------------------------------------REAPPFSGFDLCY 78 (161)
T ss_dssp --T----------------------------------------------------------------CEE---TT-S-EE
T ss_pred --ccc--------------------------------------------------------------cccccCCCCCcee
Confidence 000 0000012345677
Q ss_pred cCCCCCCCeeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEE
Q 010230 421 RLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHT 499 (514)
Q Consensus 421 ~~~~~~~~~~~~C~~~~~~P~i~f~~g-g~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~ 499 (514)
+.+... .+ .....+|+|+|+|. |.+++|+|++|++...++ ..|+..... .....+..|||..+|+++++
T Consensus 79 ~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~--~~Cla~~~~---~~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 79 NLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSPG--VFCLAFVPS---DADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp EGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECTT--EEEESEEEE---TSTTSSSEEE-HHHCCTEEE
T ss_pred eccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccCC--CEEEEEEcc---CCCCCCcEEECHHHhcCcEE
Confidence 765421 00 11258999999996 899999999999987643 789865443 12345678999999999999
Q ss_pred EEECCCCeEEEEE
Q 010230 500 VFDYSNMRVGFAE 512 (514)
Q Consensus 500 vfD~~~~riGfa~ 512 (514)
+||++++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.99 E-value=2.1e-05 Score=64.33 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=65.5
Q ss_pred eEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEEEEEEE
Q 010230 89 QYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVK 167 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~~D~v~ 167 (514)
.|++++.|| ++++++++|||++.+|+...... .+. . + ........+...+|. .......+.++
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~---~l~---~--~------~~~~~~~~~~~~~G~~~~~~~~~~~i~ 65 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE---RLG---L--P------LTLGGKVTVQTANGRVRAARVRLDSLQ 65 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH---HcC---C--C------ccCCCcEEEEecCCCccceEEEcceEE
Confidence 489999999 69999999999999999764321 111 0 0 112334556677776 34555688999
Q ss_pred ECceeecccEEEEEEeeCCcccccccceeeeeccc
Q 010230 168 IGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (514)
Q Consensus 168 ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (514)
+|+..+.++.+.++..... ..+||||+.+
T Consensus 66 ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 66 IGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 9999999888887765331 4689999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.30 E-value=0.0017 Score=55.94 Aligned_cols=101 Identities=22% Similarity=0.358 Sum_probs=67.0
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceE-E
Q 010230 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI-S 158 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~-~ 158 (514)
+++.-..++.|++++.|. ++++.+++|||++.+-++...-. .-..++.. ......+.-+.|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 455656688999999997 58999999999999988643210 00111110 12233444455654 3
Q ss_pred EEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeeccc
Q 010230 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (514)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (514)
..+.-|.+.+|+..+.|+.+.++.... ..+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~-------~~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGA-------LSESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCc-------CCceEcCHHH
Confidence 456889999999999999977664321 1279999963
No 29
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.12 E-value=0.00044 Score=46.63 Aligned_cols=37 Identities=32% Similarity=0.696 Sum_probs=35.3
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCC
Q 010230 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 423 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
.|.+|+++++++++.|.+|.|+++|.+.+.+.|..+|
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 6999999999999999999999999999999998875
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.53 E-value=0.016 Score=46.44 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=53.4
Q ss_pred EEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEEEEEEEECc
Q 010230 92 GEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDHVKIGD 170 (514)
Q Consensus 92 ~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~~D~v~ig~ 170 (514)
+++.|+ ++++++++|||++.+.+....+. .. ...+.. ......+.-.+|. ......-+.+++|+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~------~l-~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK------KL-GLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH------Hc-CCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 367787 58999999999998887643321 00 111110 1112333334444 34455666899999
Q ss_pred eeecccEEEEEEeeCCcccccccceeeeecc
Q 010230 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (514)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 201 (514)
..+.+..|.+... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9888888766651 23458999974
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=96.32 E-value=0.046 Score=55.02 Aligned_cols=196 Identities=20% Similarity=0.230 Sum_probs=105.1
Q ss_pred EEEEEecCCC----ceE-EEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEE
Q 010230 91 FGEIGIGTPP----QNF-TVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDH 165 (514)
Q Consensus 91 ~~~i~iGtP~----Q~~-~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~ 165 (514)
++.|+|=.|+ |++ +|+|||||.-+=|..+.-.. .-........+..-. -.--..|++|..-|-+.+.+
T Consensus 25 ~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~~g~~---laEC~~F~sgytWGsVr~Ad 97 (370)
T PF11925_consen 25 TVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTGGGAP---LAECAQFASGYTWGSVRTAD 97 (370)
T ss_pred eeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccCCCcc---hhhhhhccCcccccceEEEE
Confidence 4555554332 566 49999999988776543210 000011111111000 11124678888889999999
Q ss_pred EEECceeecccEEEEEEeeCC--------------cccccccceeeeecccccccCC----------------CC---Cc
Q 010230 166 VKIGDLVVKDQEFIEATREPS--------------LTFLLAKFDGILGLGFQEISVG----------------KA---VP 212 (514)
Q Consensus 166 v~ig~~~~~~~~fg~~~~~~~--------------~~~~~~~~~GilGLg~~~~s~~----------------~~---~~ 212 (514)
|+|++....++++.+..+... .......+.||||+|.-..... .. .+
T Consensus 98 V~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sCt~ 177 (370)
T PF11925_consen 98 VTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSCTS 177 (370)
T ss_pred EEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCeec
Confidence 999998777777766644210 0112446799999996543220 00 01
Q ss_pred HHHHHHHcCCCCCCEEEEEecCC------------CCCCCCcEEEECccCCCC--CccceeEEeccCccceEEEeceEEE
Q 010230 213 VWYNMVNQGLVNEPVFSFWFNRN------------ADEEEGGEIVFGGMDPDH--YKGEHTYVPVTQKGYWQFDMGDVMI 278 (514)
Q Consensus 213 ~~~~l~~qg~i~~~~FSl~l~~~------------~~~~~~G~L~fGg~d~~~--~~g~l~~~p~~~~~~w~v~l~~i~v 278 (514)
.-..+-+| +..|+..|-.+.+ ......|.|+||=--.+. ..+.....+....++... .+
T Consensus 178 t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt-----~~ 250 (370)
T PF11925_consen 178 TTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT-----TF 250 (370)
T ss_pred ccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----Ee
Confidence 11112233 5556665533221 123467999999322221 122244555555565332 23
Q ss_pred cCeeeeeecCCceEEEcCCCCCcccCHH
Q 010230 279 DGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 279 ~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
+|.... ...||||+.-.++|+.
T Consensus 251 ~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 251 NGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred cCceee------eeeEecCCceeeccCC
Confidence 333332 2499999999999853
No 32
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.77 E-value=0.062 Score=49.57 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEecc
Q 010230 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
++...+.|....++.|.++..|. +|++.+++|||-+.+-+...... .-.++.. ..+.++.+.-++
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~-------RlGid~~------~l~y~~~v~TAN 155 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR-------RLGIDLN------SLDYTITVSTAN 155 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH-------HhCCCcc------ccCCceEEEccC
Confidence 34557888888899999999998 69999999999999888654321 1234432 234566677788
Q ss_pred ceEE-EEEEEEEEEECceeecccEEEEE
Q 010230 155 GAIS-GFFSEDHVKIGDLVVKDQEFIEA 181 (514)
Q Consensus 155 G~~~-G~~~~D~v~ig~~~~~~~~fg~~ 181 (514)
|... -.+-.|+|.||+..+.++.-.++
T Consensus 156 G~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 156 GRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred CccccceEEeeeEEEccEEEcCchhhee
Confidence 8864 46788999999999888765444
No 33
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=95.60 E-value=0.0083 Score=39.29 Aligned_cols=34 Identities=53% Similarity=1.078 Sum_probs=32.2
Q ss_pred cchhhhhhhhhHHHHHHhhccCCccchhccCccc
Q 010230 323 QECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (514)
Q Consensus 323 ~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 356 (514)
..|+.++++|++.+++++....+|..+|...++|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 4699999999999999999999999999999988
No 34
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.32 E-value=0.12 Score=44.67 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=58.0
Q ss_pred cCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEE-EEeccce--EEEEEE
Q 010230 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSAD-IHYGTGA--ISGFFS 162 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-~~Y~~G~--~~G~~~ 162 (514)
....+++++.|+ ++++.+++|||++.+++...-+. .+.-. ... ...+. ...+.|. ..|...
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~---~lgl~----~~~-------~~~~~~~~~g~g~~~~~g~~~ 76 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE---KCGLM----RLI-------DKRFQGIAKGVGTQKILGRIH 76 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH---HcCCc----ccc-------CcceEEEEecCCCcEEEeEEE
Confidence 345689999998 58999999999999998643321 11111 000 11111 1223232 467777
Q ss_pred EEEEEECceeecccEEEEEEeeCCcccccccceeeeeccc
Q 010230 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (514)
Q Consensus 163 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (514)
.+.+.+++...+ ..|.+... ...++|||+-+
T Consensus 77 ~~~l~i~~~~~~-~~~~Vl~~--------~~~d~ILG~d~ 107 (124)
T cd05479 77 LAQVKIGNLFLP-CSFTVLED--------DDVDFLIGLDM 107 (124)
T ss_pred EEEEEECCEEee-eEEEEECC--------CCcCEEecHHH
Confidence 889999998865 66655432 24589999963
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.98 E-value=0.24 Score=40.05 Aligned_cols=75 Identities=13% Similarity=0.054 Sum_probs=46.9
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce---EEEEEEEEEE
Q 010230 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA---ISGFFSEDHV 166 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~---~~G~~~~D~v 166 (514)
|++++.|+ ++++.+++||||+..++....+. ....+. .......+.-.+|. ..|.. .+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~~--------~lg~~~------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTWR--------KLGSPP------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHHH--------HhCCCc------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 57889998 59999999999999999754431 011110 11223333434443 36776 7899
Q ss_pred EECceeecccEEEEEE
Q 010230 167 KIGDLVVKDQEFIEAT 182 (514)
Q Consensus 167 ~ig~~~~~~~~fg~~~ 182 (514)
++++... ...|-+..
T Consensus 64 ~~~~~~~-~~~~~v~~ 78 (91)
T cd05484 64 KYGGKTK-VLTLYVVK 78 (91)
T ss_pred EECCEEE-EEEEEEEE
Confidence 9998773 35554443
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.47 E-value=0.4 Score=41.32 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=22.4
Q ss_pred eeeeChhhhcCeEEEEECCCCeEEE
Q 010230 486 LWILGDVFMGPYHTVFDYSNMRVGF 510 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGf 510 (514)
..|||..||+.+-.+.|+.+.+|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4699999999999999999998853
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.41 E-value=0.4 Score=41.99 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.8
Q ss_pred eeeeChhhhcCeEEEEECCCCeEEEEE
Q 010230 486 LWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
..|||.++|+.+....|..+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 479999999999999999999999864
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.15 E-value=2.8 Score=35.85 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=27.9
Q ss_pred CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 265 ~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
..+++.+. +.|||..+. ++||||++.+.++.++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~~-------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNVR-------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEEE-------EEEECCCCcEEcCHHHHHHc
Confidence 44556544 467777553 89999999999999888765
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=92.08 E-value=0.83 Score=36.48 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=47.1
Q ss_pred EEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEE-EEE-EEEECc
Q 010230 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF-SED-HVKIGD 170 (514)
Q Consensus 93 ~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~-~~D-~v~ig~ 170 (514)
.+.|. ++++++++|||++.+-+....+. .. . ...+...+.=.+|.....+ ..+ .+.+|+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~---~~-----~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP---KQ-----E---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh---hc-----c---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 45666 69999999999999999765442 00 0 1122333333344321111 123 699999
Q ss_pred eeecccEEEEEEeeCCcccccccceeeeeccc
Q 010230 171 LVVKDQEFIEATREPSLTFLLAKFDGILGLGF 202 (514)
Q Consensus 171 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 202 (514)
....+ .|...... .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88875 44443221 268999864
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.65 E-value=3.9 Score=34.15 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.3
Q ss_pred eeeeChhhhcCeEEEEECCCCeE
Q 010230 486 LWILGDVFMGPYHTVFDYSNMRV 508 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~ri 508 (514)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 56999999999999999988753
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.64 E-value=1.6 Score=33.56 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.6
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCceeeeCCCC
Q 010230 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
...+++++.|| ++.+.+++|||++..+++...+
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 57799999999 4999999999999999876543
No 42
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=82.45 E-value=1.5 Score=33.38 Aligned_cols=37 Identities=38% Similarity=0.768 Sum_probs=35.4
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCC
Q 010230 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLP 423 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
.|..|.+++..+++.+..+.+++.+.+.+.+.|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999987
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=79.13 E-value=2.7 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=23.6
Q ss_pred EEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
+.|+|+.+ .++||||++.+.+++++++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 46677654 489999999999999888776
No 44
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=75.92 E-value=4.7 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
+.+++..+. +++|||++..+++.+.++.+
T Consensus 13 ~~I~g~~~~-------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------EEEeCCCcceecCHHHHHHh
Confidence 466776653 89999999999999988887
No 45
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=75.46 E-value=5.8 Score=37.60 Aligned_cols=96 Identities=24% Similarity=0.494 Sum_probs=68.7
Q ss_pred chhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhh
Q 010230 324 ECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLK 403 (514)
Q Consensus 324 ~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
.|...++.|.+.+++.+.++..|...|....+|+-.-.+ ...+-+. -.+...|..|-..+++....|.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~~------~~~~~~~------~~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAGP------VSEVFAS------QPAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccch------hhhhhhh------cccccccHHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999751111 1111111 1236789999999999998888
Q ss_pred h-hhhHHHHHHhhhhhcccCCCCCCCeeecCCC
Q 010230 404 Q-NQTQERILNYVNELCDRLPSPMGESAVDCSR 435 (514)
Q Consensus 404 ~-~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~ 435 (514)
- +.+..++..-...-|..++ .|.-.|..
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~----~~~~~Ck~ 174 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP----NYEQKCKQ 174 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc----cchhHHHH
Confidence 8 5555666555555664333 23434654
No 46
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=74.87 E-value=3.9 Score=33.27 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=23.8
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCCCC
Q 010230 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
+.+|.+. ++++.+++||||+.+-++...+
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 5678888 4899999999999998876543
No 47
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=72.25 E-value=5.4 Score=31.98 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=25.0
Q ss_pred eEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 275 ~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
.+.|+|..+. +.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 3567777764 79999999999999988876
No 48
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=71.83 E-value=2.5 Score=32.08 Aligned_cols=36 Identities=44% Similarity=0.998 Sum_probs=33.1
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCccc
Q 010230 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 356 (514)
+...|..+++.|.+.+++.+.....|..+|...++|
T Consensus 41 ~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 41 LSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 566799999999999999999999999999998887
No 49
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=69.23 E-value=7.1 Score=31.01 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.0
Q ss_pred EEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
+.+|+..+ .++||||++.++++.+..+++
T Consensus 7 v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 46666555 489999999999999877765
No 50
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=67.81 E-value=2.7 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.062 Sum_probs=16.2
Q ss_pred eEEEeccccCCchhhhhhhccccc
Q 010230 30 LYRIGLKKRKFDLNNRVAARLDSK 53 (514)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~ 53 (514)
++||||+|.++.++.+.+.+...+
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~~~ 24 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTLEE 24 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-HHH
T ss_pred CEEEeccCCchHHHHHHHcCchHH
Confidence 479999999999998888877654
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.56 E-value=5.1 Score=32.71 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=9.4
Q ss_pred CCchhHHHHHHHHHHHhhhhhh
Q 010230 3 MVFKSITAGFFLCLLLFPVVFS 24 (514)
Q Consensus 3 m~~~~~~~~~~l~~l~~~~~~a 24 (514)
|++..++++.++++++|++++.
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 5554444443444344433333
No 52
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.15 E-value=8.5 Score=30.55 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=24.2
Q ss_pred EEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
+.+||..+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------EEEECCCCeEEECHHHhhhc
Confidence 566777654 79999999999999998875
No 53
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=63.79 E-value=30 Score=31.13 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.3
Q ss_pred CceEEEcCCCCCcccCHHHHHHHH
Q 010230 289 GCAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 289 ~~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
...+++|||++..++..++.+.|-
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 456899999999999998888764
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=62.44 E-value=21 Score=30.65 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=50.1
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce--EEEEEEEE
Q 010230 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--ISGFFSED 164 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~--~~G~~~~D 164 (514)
....|++++|+ ++++.+++|||.-.+-++. .|. ..|+-...-+. ..-...+|-|. ..|.+..-
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEG----------GG-EE-------EEEEEEEEE
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCH-HHH--HHcCChhhccc----------cccccccCCCcCceeEEEEEE
Confidence 34689999999 5999999999999987754 332 35543222221 11122344454 67999999
Q ss_pred EEEECceeecccEEEEEEeeCCcccccccceeeeecc
Q 010230 165 HVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (514)
Q Consensus 165 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 201 (514)
.+.+|+..++ ..|-+... ...+=+|||-
T Consensus 87 ~l~ig~~~~~-~s~~Vle~--------~~~d~llGld 114 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVLED--------QDVDLLLGLD 114 (124)
T ss_dssp EEEETTEEEE-EEEEEETT--------SSSSEEEEHH
T ss_pred EEEECCEEEE-EEEEEeCC--------CCcceeeeHH
Confidence 9999986655 44444432 2235567773
No 55
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=61.41 E-value=7 Score=37.04 Aligned_cols=48 Identities=25% Similarity=0.555 Sum_probs=41.7
Q ss_pred HHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccC
Q 010230 312 NHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFD 359 (514)
Q Consensus 312 ~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
.+....-.+++..|+.++..|.+.++..+...++|..+|.+.+.|.-.
T Consensus 159 ~~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~~ 206 (218)
T KOG1340|consen 159 LKSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPPA 206 (218)
T ss_pred HhhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCcc
Confidence 344455667788899999999999999999999999999999999743
No 56
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=58.90 E-value=12 Score=30.11 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.5
Q ss_pred EEEecCCCceEEEEeeCCCCceeeeCCC
Q 010230 93 EIGIGTPPQNFTVIFDTGSSNLWVPSSK 120 (514)
Q Consensus 93 ~i~iGtP~Q~~~v~~DTGSs~~wv~~~~ 120 (514)
.+.|+ +|.+++++|||+.++-+....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcccc
Confidence 45666 699999999999999997544
No 57
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=47.63 E-value=12 Score=30.33 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEcCeeeeeecCCceEEEcCCCCCcccCHHHH
Q 010230 276 VMIDGQTTGFCAGGCAAIADSGTSLLAGPTTII 308 (514)
Q Consensus 276 i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~ 308 (514)
+.+++..+. ++||||+..+.++.+.+
T Consensus 10 v~i~g~~i~-------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 10 VKINGKKIK-------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEETTEEEE-------EEEETTBSSEEESSGGS
T ss_pred EeECCEEEE-------EEEecCCCcceeccccc
Confidence 556666654 89999999999998654
No 58
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=44.99 E-value=23 Score=28.70 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.8
Q ss_pred ceEEEcCCCCCcccCHHHHHHHH
Q 010230 290 CAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 290 ~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
..+.+|||++...+|...++++-
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 34799999999999998888764
No 59
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=41.17 E-value=34 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.9
Q ss_pred eEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 275 DVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 275 ~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
.+++||..+. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------EEEeCCCCccccCHHHHHHc
Confidence 3567887764 89999999999999888874
No 60
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=41.04 E-value=33 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=22.9
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCC
Q 010230 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~ 119 (514)
...+.++.-+.++.++|||||+.-++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 45555666679999999999999888654
No 61
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=40.47 E-value=1.9e+02 Score=25.15 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=24.3
Q ss_pred ceEEEEEEecCCCceEEEEeeCCCCceeeeC
Q 010230 88 AQYFGEIGIGTPPQNFTVIFDTGSSNLWVPS 118 (514)
Q Consensus 88 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~ 118 (514)
..-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 34677888886 999999999999998854
No 62
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=37.45 E-value=45 Score=31.19 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=28.9
Q ss_pred ccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010230 266 KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 266 ~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
.|+|.++ ..|||+.+. .++|||.|.+.++++..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 4555544 578888886 69999999999999888776
No 63
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.23 E-value=22 Score=30.31 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.4
Q ss_pred EEEcCCCC-CcccCHHHHHHHH
Q 010230 292 AIADSGTS-LLAGPTTIITQVN 312 (514)
Q Consensus 292 aiiDSGtt-~~~lP~~~~~~l~ 312 (514)
.+||||.+ ++.+|.++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999888764
No 64
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=32.83 E-value=90 Score=30.41 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=12.6
Q ss_pred CccEEeceeccCceEEEEE
Q 010230 76 DADIVALKNYMDAQYFGEI 94 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i 94 (514)
...++.+.|..+..|.+..
T Consensus 44 ~~~sl~l~N~~~~p~LvQs 62 (253)
T PRK15249 44 SSVDVQLKNNDAIPYIVQT 62 (253)
T ss_pred cceeEEEEcCCCCcEEEEE
Confidence 3456777777666677764
No 65
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.03 E-value=63 Score=26.83 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=39.8
Q ss_pred EEEEecCCCc----eEEEEeeCCCCcee-eeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEEEEE
Q 010230 92 GEIGIGTPPQ----NFTVIFDTGSSNLW-VPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSEDH 165 (514)
Q Consensus 92 ~~i~iGtP~Q----~~~v~~DTGSs~~w-v~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~~D~ 165 (514)
++|.|..|.| ++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 5788888732 78899999998764 4432110 11111111 2234456664 455677889
Q ss_pred EEECceee
Q 010230 166 VKIGDLVV 173 (514)
Q Consensus 166 v~ig~~~~ 173 (514)
+.+++...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
No 66
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=27.15 E-value=57 Score=30.93 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhcCC
Q 010230 1 MGMVFKSITAGFFLCLLLFPVVFSTPN 27 (514)
Q Consensus 1 m~m~~~~~~~~~~l~~l~~~~~~a~s~ 27 (514)
|+|+.|+..++.+-.+|+|.+..+...
T Consensus 1 ma~~f~~~il~~l~A~L~c~ss~~v~~ 27 (303)
T COG4714 1 MAMGFRMKILIKLTALLLCGSSWHVNA 27 (303)
T ss_pred CCcchHHHHHHHHHHHHHhhHhhhhcC
Confidence 999999999988888888877665443
No 67
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.92 E-value=83 Score=25.35 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=16.3
Q ss_pred CCCCchhHHHHHHHHHHHhhhhhhc
Q 010230 1 MGMVFKSITAGFFLCLLLFPVVFST 25 (514)
Q Consensus 1 m~m~~~~~~~~~~l~~l~~~~~~a~ 25 (514)
|+|.+...++++++++.++++....
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~~ 25 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIYA 25 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcc
Confidence 8898887666666666555554433
No 68
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=22.72 E-value=2.9e+02 Score=22.30 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.0
Q ss_pred ceEEEEeeCCCCceeeeCCCCC
Q 010230 101 QNFTVIFDTGSSNLWVPSSKCY 122 (514)
Q Consensus 101 Q~~~v~~DTGSs~~wv~~~~C~ 122 (514)
-...+++|||+...-+|...|.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3567999999999999876663
Done!