Your job contains 1 sequence.
>010232
MQTPVQACKSFTFTLLNSAPPLSTCSFVQNGNAKYPLQQSRKFHSFAASFRFLRSTHIVF
CSQKDVFDDLSSAQFPENVENEGLEGNEELELLNKPNLVPISNGVASEVDKKSEKPDEEE
ALAPFLKFFKPRDSAEEVEEEGSEVGVSRESIDVDDKVGEDKVSVEYYEPKPGDFVIGVV
VSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDD
AIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPI
EVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDL
ILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDL
LNEGERVKVLVVKSMFPDKISLSIADLESEPGLFVSDKERVFSEAEEMAKKYRQKLPAVS
VSPKSESLPTDTPPFDSEASMCANWKWFRFEQDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010232
(514 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 301 1.3e-25 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 206 6.1e-14 2
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 195 1.0e-13 2
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 192 4.7e-12 2
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 191 9.0e-12 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 180 6.8e-11 1
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 187 1.1e-10 2
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 181 1.1e-10 1
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 177 4.4e-10 2
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 175 4.5e-10 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 172 4.8e-10 2
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 173 7.8e-10 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 165 1.4e-09 2
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 169 2.2e-09 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 168 8.9e-09 2
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 157 4.6e-08 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 157 4.6e-08 1
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 147 7.3e-07 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 118 2.2e-06 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 131 4.6e-05 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 130 5.8e-05 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 128 9.5e-05 1
ZFIN|ZDB-GENE-040325-2 - symbol:zcchc17 "zinc finger, CCH... 119 0.00012 1
ASPGD|ASPL0000042752 - symbol:rrp5 species:162425 "Emeric... 127 0.00013 2
UNIPROTKB|E2R5A7 - symbol:E2R5A7 "Uncharacterized protein... 118 0.00017 1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 103 0.00018 1
TIGR_CMR|SPO_3389 - symbol:SPO_3389 "polyribonucleotide n... 125 0.00021 1
UNIPROTKB|F1N7K4 - symbol:F1N7K4 "Uncharacterized protein... 116 0.00028 1
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve... 127 0.00036 1
UNIPROTKB|Q3T0H4 - symbol:ZCCHC17 "Zinc finger, CCHC doma... 115 0.00039 1
UNIPROTKB|F6XYB1 - symbol:ZCCHC17 "Uncharacterized protei... 115 0.00039 1
UNIPROTKB|Q9NP64 - symbol:ZCCHC17 "Nucleolar protein of 4... 115 0.00039 1
UNIPROTKB|E2R379 - symbol:E2R379 "Uncharacterized protein... 115 0.00040 1
RGD|1565267 - symbol:Zcchc17 "zinc finger, CCHC domain co... 115 0.00046 2
MGI|MGI:1919955 - symbol:Zcchc17 "zinc finger, CCHC domai... 114 0.00050 1
TIGR_CMR|CBU_0852 - symbol:CBU_0852 "polyribonucleotide n... 121 0.00055 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 95 0.00065 1
CGD|CAL0005606 - symbol:orf19.1578 species:5476 "Candida ... 111 0.00094 2
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 301 (111.0 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 73/217 (33%), Positives = 125/217 (57%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
LLS R + ++AW R RQ++ + ++ K N GGL+ +EGLR F+P +++ S+
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAA 224
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT--LNLREGTLLEGTVKKIYPYGAQ 392
EL EK + ++ ++E+ L+LS R+A A L G+++ G V+ + PYGA
Sbjct: 225 -EELLEK---EIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 280
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 281 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
Query: 452 GLFVSDKERVFSEAEEMAKKYRQKLPAVSVSPKSESL 488
G + + + VF +AEEMA+ +RQ++ +++ L
Sbjct: 339 GDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 375
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 206 (77.6 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 61/211 (28%), Positives = 111/211 (52%)
Query: 254 VVETGTVLFAEVLGRT-LSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGL 312
VV G + A VL + GR +LS +R + AW + +K+ +E ++ E GGL
Sbjct: 79 VVSVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL 138
Query: 313 LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL- 371
+ I GLR FLP + L + +L+ +G+ + +I ++++ N+++LS R AW
Sbjct: 139 ILDI-GLRGFLPAS--LVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRR-AWLEQT 194
Query: 372 ----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
NL++GT+ +G V I +GA + +G + GL+H+S +S + S+++
Sbjct: 195 QSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVV 252
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
G+ V V V+ M +++SLS+ + +P
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDP 283
Score = 45 (20.9 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 161 DKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYD 210
DK +++Y+ GD V G +V + +++ +++G G + +E+ +D
Sbjct: 27 DK-TIKYFND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHD 73
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 195 (73.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 70/248 (28%), Positives = 126/248 (50%)
Query: 254 VVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLL 313
VVE L +V+ + +LS R + + AW +++ +V + GGL+
Sbjct: 61 VVELDQTLELKVI-KLEENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLV 119
Query: 314 TRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER------- 365
+ G+R F+P + + + V +FT+ K G+ + V+I ++ + N +ILS +
Sbjct: 120 VDL-GVRGFIPASLVEVHYVEDFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELEL 175
Query: 366 ---EAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLN 422
+ A +L+EG ++EGTV+++ +GA + +G + GL+HIS +S RV S++L
Sbjct: 176 DSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLE 233
Query: 423 EGERVKVLVVKSMFPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKKYRQKLPAVS 480
+G++VKV V+ S+ D +ISLSI + P V + + E + K+ V
Sbjct: 234 QGQKVKVKVL-SVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVE 292
Query: 481 VSPKSESL 488
+ P E L
Sbjct: 293 ILPGVEGL 300
Score = 132 (51.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 40/148 (27%), Positives = 79/148 (53%)
Query: 311 GLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G + G+ + +++ RV +E+ E+ G+++ V++ ++ DT + LS + A
Sbjct: 203 GAFVNVGGVDGLVHISQISHERVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQP 261
Query: 368 --WATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNE 423
W + ++ G + EG VK++ +GA + I GL+H+S ++ V + +++L
Sbjct: 262 GPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVE-GLVHVSQIANRHVKNPNEVLEM 320
Query: 424 GERVKVLVVKSMFPDK-ISLSIADLESE 450
G+ VKV V++ +K ISLSI + E
Sbjct: 321 GQEVKVKVLEVHVAEKRISLSIKEALEE 348
Score = 50 (22.7 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 156 DKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLY-DKEMD 214
+K+ E+ + + E + GD V G V E ++ VNVG G + E+ ++ +K D
Sbjct: 3 EKMNEEVMDSK--ELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASD 60
Query: 215 FLLCD 219
+ D
Sbjct: 61 VVELD 65
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 192 (72.6 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 60/187 (32%), Positives = 94/187 (50%)
Query: 287 WHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL-SRV-----NNFTEL-K 339
W + + + E + +N GGLL R L FLP +L SR + E+ K
Sbjct: 97 WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156
Query: 340 EKVGRRMYVQITRINEDTNDLILSEREA-WA--TLNLREGTLLEGTVKKIYPYGA--QIR 394
VG ++ V++ + +E+ LILSE+ A W + N+ G + G V + YGA +R
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216
Query: 395 IGDS--NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
D + +GL+H+S +S V V D+L +G+ V+V+V +I+LSI LE +P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276
Query: 452 GLFVSDK 458
L DK
Sbjct: 277 LLETLDK 283
Score = 38 (18.4 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 193 GADLLGTMLTKEVLPLYDKEMDFLLCDLK 221
GA LG++ L+D++ FL C L+
Sbjct: 6 GATTLGSVSFAS--HLFDQQSTFLSCPLR 32
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 191 (72.3 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 65/201 (32%), Positives = 101/201 (50%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS R+ R AW + +E K T GGL I G++AFLP +++ R
Sbjct: 106 GYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKGGLTVDI-GVQAFLPASQVDLR 164
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWA-----TL-NLREGTLLEG 381
L + +G ++ ++N+ +++LS R E A TL NL EG EG
Sbjct: 165 PGG--NLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREG 222
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK I YGA + IG + GLLH+++MS R+ S++L G+++ V ++K KI
Sbjct: 223 VVKNITDYGAFVDIGGVD--GLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKI 280
Query: 441 SLSIADLESEPGLFVSDKERV 461
SL + + +P L V K +V
Sbjct: 281 SLGLKQITPDPWLAVEQKFQV 301
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 180 (68.4 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 299 PIEVKFTEWNTGGLLTRIEG-LRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINED 356
P+E + GG ++ G +RAF P +++ L R N E VGR++ ++ E
Sbjct: 118 PVEGNVEKEIKGGFEIKVGGTVRAFCPYSQISLRRAANPAEF---VGRQLLFKVVEFAER 174
Query: 357 TNDLILS--------EREAWATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHI 406
+++LS ER+ L L+EGT L GTV ++ P+GA + IG GL+ I
Sbjct: 175 GRNIVLSHRAILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDIGGVE--GLIPI 232
Query: 407 SNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEP 451
S +RV + D+L+ GE+V LV + + + KISLS+ D++++P
Sbjct: 233 SEAGWSRVKEIGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADP 278
Score = 121 (47.7 bits), Expect = 0.00024, P = 0.00024
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 311 GLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA-- 367
G I G+ +P +E SRV ++ VG ++ + RI+ + N + LS R+
Sbjct: 218 GAFVDIGGVEGLIPISEAGWSRVKEIGDVLS-VGEQVTALVKRIDWENNKISLSLRDVQA 276
Query: 368 --WATLNLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSR-TRVTSVSDLLN 422
W + R EG+ GTV ++ P+GA + + GL+HIS + R+ ++L
Sbjct: 277 DPWEGIAERFPEGSYHTGTVARLAPFGAFVTLAPGI-DGLIHISKLGAGKRIAHPREVLK 335
Query: 423 EGERVKVLVVKSMFPDKISLSIA 445
EG+ V+V V+ + + LS+A
Sbjct: 336 EGDAVEV-TVEGVDRESRRLSLA 357
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 187 (70.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 61/223 (27%), Positives = 113/223 (50%)
Query: 255 VETGTVLFAEV-LGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT--GG 311
+E G+ + V T SG +LS + ++ W+R+ ++ +V T G
Sbjct: 84 LEVGSKIIVYVEKTETGSGNLVLSYTKALKQKVWNRLYEMYLNGSDEDVMGVILYTIKSG 143
Query: 312 LLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL 371
+ +EGL AFLP + L V ++ VG ++ +I +++ T + +S R+A +
Sbjct: 144 CIVEVEGLNAFLPNSHL--DVRPVSDPATLVGVKLKFRILKMDPKTGKIFVSRRKALGAV 201
Query: 372 N----------LREGTLLEGTVKKIYPYGAQIRIGDSNR----SGLLHISNMSRTRVTSV 417
+ ++EG +++G VK I YG ++I +S++ GLL+++++S RVT
Sbjct: 202 HEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHP 261
Query: 418 SDLLNEGERVKVLVVKSMFPDK--ISLSIADLESEPGLFVSDK 458
S + + G+ V+V V+ ++ P+K ISL + L P VS K
Sbjct: 262 SSIYSVGQEVRVKVI-AVDPEKGRISLGVKQLTENPWKDVSKK 303
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 171 KPGDFVIGVVVSGNENKLDVNVG 193
+ GD V GV+ S + + + VN+G
Sbjct: 44 REGDMVEGVIKSISPHFVLVNLG 66
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 181 (68.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 65/221 (29%), Positives = 112/221 (50%)
Query: 261 LFAEVL-GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIE-VKFTEWNTGGLLTRIEG 318
L+ E + GR +G +LS + R W ++ + + E +E V F+ G + I+G
Sbjct: 109 LYLEKIEGR--NGSVVLSREKAIRDELWQKLEEAAEKKEDVEGVIFSSIKCGYTVD-IKG 165
Query: 319 LRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER----EAWATLN- 372
+ AFLP + + L +V + T L +G++ +I ++++ ++++S + E+ A
Sbjct: 166 VVAFLPASHVALRQVKDITPL---LGKKQKFRILKMDKKQGNIVVSRKAILEESLADAKS 222
Query: 373 -----LREGTLLEGTVKKIYPYGAQIRIGDSNR----SGLLHISNMSRTRVTSVSDLLNE 423
L EG ++EG VK I YG I I +S GLLHI+++S +RV+ S + +
Sbjct: 223 LYLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSC 282
Query: 424 GERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKERVFS 463
G+ VK ++K KISL + LE P + K V S
Sbjct: 283 GQTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDS 323
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 177 (67.4 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 62/235 (26%), Positives = 110/235 (46%)
Query: 237 KDDDAIAMSGGSGPGR-PVVETGTVLFAEV-LGRTLSGRPLLSTRRLFRKMAWHRVRQIK 294
K + + + + PG P + G + + G ++S R+ AW R+ +
Sbjct: 47 KMEGRVELKEFANPGEAPEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAY 106
Query: 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354
++ +E GG + G AFLP +++ V + +G + QI +++
Sbjct: 107 ADDQRVEGAIFGRVKGGFTVDLGGAVAFLPGSQV--DVRPVRDAGPLMGLKQPFQILKMD 164
Query: 355 EDTNDLILSER--------EAWATL--NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLL 404
++++S R E A + NL EG ++G VK I YGA + +G + GLL
Sbjct: 165 RRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDLGGVD--GLL 222
Query: 405 HISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
H+++M+ RV +++LN GE VKV V+K + +ISL + L+ +P V K
Sbjct: 223 HVTDMAWRRVNHPNEILNIGETVKVQVIKINKDTHRISLGMKQLQEDPWDLVGAK 277
Score = 42 (19.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKE 204
S E P+ G V G V++ + ++VG + G + KE
Sbjct: 16 SFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKE 56
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 175 (66.7 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 68/235 (28%), Positives = 117/235 (49%)
Query: 249 GPGRPVVETGTV--LFAEVL-GRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIE-VKF 304
G G+ +E G+ L+ E G+ SG +LS + R W ++ Q N IE V F
Sbjct: 71 GEGKQDIEVGSKVKLYLEKTEGK--SGSVVLSREKAVRDELWQKLEQAAAENLDIEGVIF 128
Query: 305 TEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363
G + G+ AFLP + + L +V + T L +G++ +I ++++ ++++S
Sbjct: 129 GSIKCG-FTVDVGGVVAFLPASHVGLRQVKDITPL---LGKKQKFRILKMDKKQGNVVVS 184
Query: 364 ER----EAWATLN------LREGTLLEGTVKKIYPYGAQIRIGDSNR----SGLLHISNM 409
+ E+ A L EG+++EG VK I YG I I +S GLLHI+++
Sbjct: 185 RKAVLEESLADAKDSFLSTLEEGSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDI 244
Query: 410 SRTRVTSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEPGLFVSDKERVFS 463
S +RV+ S + + G+ V+ +++ + KISL + LE P V ++ V S
Sbjct: 245 SWSRVSHPSAVFSCGQTVRAKIIRIDRENRKISLGVKQLEESPWANVEERYPVGS 299
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 172 (65.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 53/198 (26%), Positives = 98/198 (49%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + E + GG + G+RAFLP + L
Sbjct: 80 GETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGS--LVD 137
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATL-NLREGTLLEG 381
V + G+ + ++ ++++ N++++S R E L NL+EG ++G
Sbjct: 138 VRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKG 197
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K ++
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRV 255
Query: 441 SLSIADLESEPGLFVSDK 458
SL + L +P + ++ +
Sbjct: 256 SLGLKQLGEDPWVAIAKR 273
Score = 47 (21.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVG 193
S++ E +PG V GVVV+ +++ + V+ G
Sbjct: 12 SLKEIETRPGSIVRGVVVAIDKDVVLVDAG 41
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 173 (66.0 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 57/192 (29%), Positives = 97/192 (50%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G LS + R AW + + + E ++ E GG + +RAFLP + + +
Sbjct: 76 GETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVK 135
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATLN-LREGTLLE 380
V + L++K + +I ++++ N++++S R E A L L+EG ++
Sbjct: 136 PVRDPGYLEDK---EIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIK 192
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G +K I YGA + +G + GLLHI++M+ RV SDLLN G+ V V V+K +
Sbjct: 193 GVIKNITDYGAFVDLGGVD--GLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKR 250
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 251 VSLGMKQLADDP 262
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 165 (63.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 50/198 (25%), Positives = 99/198 (50%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G +LS + R AW + + + E + GG + +RAFLP + L
Sbjct: 80 GETILSREKAKRHEAWQVLEKAYEEKETVIGVINGKVKGGFTVEVSDIRAFLPGS--LVD 137
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATL-------NLREGTLLEG 381
V + G+ + ++ ++++ N++++S R EA + +L EG ++G
Sbjct: 138 VRPVRDTAHLEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAERDELLESLAEGQEVKG 197
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK + YGA + +G + GLLHI++M+ RV S+++N G+ ++V V+K ++
Sbjct: 198 IVKNLTDYGAFVDLGGID--GLLHITDMAWKRVKHPSEIVNVGDEIQVKVLKFDRERTRV 255
Query: 441 SLSIADLESEPGLFVSDK 458
SL + L +P + ++++
Sbjct: 256 SLGMKQLGEDPWVAIANR 273
Score = 50 (22.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVG 193
S++ E +PG + G +V+ N++ + V+ G
Sbjct: 12 SLKEIETRPGSIIRGTIVAVNKDNVIVDAG 41
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 169 (64.5 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 73/257 (28%), Positives = 122/257 (47%)
Query: 216 LLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGRPVV-ETGTVLFAEVLGRTLSGRP 274
++ ++K D E ++ GK K + +A+S G ++ G + V+G + GR
Sbjct: 40 VIVEIKND-EVYVDIGK----KSEGILALSEIQGDNSKLLFNVGDSIKVAVMG-SRGGRS 93
Query: 275 LLSTRRLFRK-MAWHRVRQIKQLNEPI-EVKFTEWNTGGLLTRIEG-LRAFLPKAELLSR 331
LLS ++ RK ++ ++ + I VK N GGL+ E + FLPK++
Sbjct: 94 LLSHKKALRKEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQY--- 150
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILS-------EREAWATL--NL-REGTLLEG 381
F E +G+ V+I +I++D +I+S ER L N+ ++ L+EG
Sbjct: 151 --GFKETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEG 208
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-I 440
VKKI YG + +G + GL+H S +S + L EG++V V V+K K +
Sbjct: 209 IVKKITTYGMFVDVGGVD--GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHL 266
Query: 441 SLSIADLESEPGLFVSD 457
SLSI +P + D
Sbjct: 267 SLSIKAALPDPWSEIKD 283
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 168 (64.2 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 56/199 (28%), Positives = 100/199 (50%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + R AW + + + E + GG + G+RAFLP + + R
Sbjct: 80 GETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATL-NLREGTLLE 380
V + L+ K + ++ ++++ N++++S R E A L NL+EG ++
Sbjct: 140 PVRDTAHLEYK---ELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P L +S +
Sbjct: 255 VSLGLKQLGEDPWLEISKR 273
Score = 39 (18.8 bits), Expect = 8.9e-09, Sum P(2) = 8.9e-09
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 164 SVEYYEPKPGDFVIGVVVSGNENKLDVNVG 193
S++ E +PG V G VV+ + V+ G
Sbjct: 12 SLQTLEFRPGSIVRGTVVAIENGMVLVDAG 41
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 157 (60.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 43/160 (26%), Positives = 87/160 (54%)
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---E 366
GG + G+RAFLP + L V + + + ++ ++++ N++++S R E
Sbjct: 118 GGFTVELNGIRAFLPGS--LVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 367 AWATLN-------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
+ +++ L+EGT ++G VK + YGA + +G + GLLHI++M+ RV S+
Sbjct: 176 SESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSE 233
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
++N G+ + V V+K ++SL + L +P + ++ +
Sbjct: 234 IVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKR 273
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 157 (60.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 43/160 (26%), Positives = 87/160 (54%)
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---E 366
GG + G+RAFLP + L V + + + ++ ++++ N++++S R E
Sbjct: 118 GGFTVELNGIRAFLPGS--LVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 367 AWATLN-------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
+ +++ L+EGT ++G VK + YGA + +G + GLLHI++M+ RV S+
Sbjct: 176 SESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSE 233
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
++N G+ + V V+K ++SL + L +P + ++ +
Sbjct: 234 IVNVGDEILVKVLKFDRDRTRVSLGLKQLGEDPWVAIAKR 273
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 147 (56.8 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 58/218 (26%), Positives = 105/218 (48%)
Query: 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG 311
R V+ G VL G+ +LS ++ +A ++ + ++ P+ K E GG
Sbjct: 333 RDAVKEGDEFPVLVLKEDEEGKIILSRKKALEILAEEKLLEWQKNKVPVTGKIVEVVKGG 392
Query: 312 LLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQIT----RINEDTNDL-----I 361
+L I G+RAFLP + + L+ V + LK + +++ R+ D I
Sbjct: 393 VLVDI-GVRAFLPASLIALNYVEDLEALKGEEITAYVIEVDLAKRRVVLDRKSYLKEQEI 451
Query: 362 LSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
+++E ATL +EG+ ++G V KI P+GA + +G GLL ++S R + L
Sbjct: 452 KTKKEKIATL--KEGSKVKGKVTKIMPFGAFVDLGGFE--GLLRAQDISWQRNVRPEEHL 507
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
G+ ++V+V++ K+SL + L +P + D+
Sbjct: 508 QVGQELEVVVLEVDRHNLKVSLGLKQLTPDPWQKIPDE 545
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 118 (46.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-S 434
G ++ G + I YGA + + D++ GL+HIS ++ V + D L G+ VKV ++
Sbjct: 7 GDVVSGKIAGIQSYGAFVAL-DNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVKILDID 65
Query: 435 MFPDKISLSIADLESEPGLFVSDKERVFS-EAEEMAKKYRQKL 476
+KISLSI E P + K++V S E +E R KL
Sbjct: 66 EEKNKISLSIRATEEAPKEQPTKKKQVSSSENDEGFNTLRDKL 108
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 131 (51.2 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
T L GT+ EG V +I +GA + I + GL+HIS +S RV +V+D L+EG+ VKV
Sbjct: 618 TAELEVGTIYEGKVVRIVDFGAFVNILPG-KDGLVHISQISTERVNNVTDHLSEGQEVKV 676
Query: 430 LVVKSMFPDKISLSIAD-LES 449
V++ ++ LSI + +ES
Sbjct: 677 KVLEVDRQGRVRLSIKEAMES 697
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 130 (50.8 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
T + GTL G V +I +GA + + + GL+HIS +S RV +VS++L EG+ VKV
Sbjct: 616 TAEIEVGTLYTGKVVRIVDFGAFVNVLPG-KDGLVHISQISEERVNNVSEVLTEGQEVKV 674
Query: 430 LVVKSMFPDKISLSIADLESEP 451
V++ ++ LSI + +P
Sbjct: 675 KVLEVDRQGRVRLSIKEAMEKP 696
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 128 (50.1 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
T EG L GTVKK+ +GA + I GL+HIS + RV +V+D+LNEG++V V
Sbjct: 614 TAEAEEGKLYMGTVKKVMDFGAFVEIFPGT-DGLVHISELDTERVKNVTDVLNEGDKVLV 672
Query: 430 LVVKSMFPDKISLS 443
+ KI LS
Sbjct: 673 KCIGIDKQGKIKLS 686
>ZFIN|ZDB-GENE-040325-2 [details] [associations]
symbol:zcchc17 "zinc finger, CCHC domain containing
17" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
SMART:SM00343 ZFIN:ZDB-GENE-040325-2 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:51538 HOVERGEN:HBG080343
EMBL:BC056336 IPI:IPI00505548 RefSeq:NP_956838.1 UniGene:Dr.78134
ProteinModelPortal:Q7SZN1 SMR:Q7SZN1 GeneID:393516 KEGG:dre:393516
InParanoid:Q7SZN1 NextBio:20814542 ArrayExpress:Q7SZN1
Uniprot:Q7SZN1
Length = 235
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 30/97 (30%), Positives = 53/97 (54%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSM 435
++L+G V + YGA ++I + GL+H S MS RV + +++++ GE+V + V+ K M
Sbjct: 20 SILKGEVVSVTAYGAFVKIPGYRKQGLVHKSEMSACRVENPAEIVDVGEQVWIKVIGKEM 79
Query: 436 FPDKISLSIADLESEPGLFVS-DKERVFSEAEEMAKK 471
DK+ LS + G D V +E +E ++
Sbjct: 80 KDDKVKLSFSMNSVNQGTGRDLDPNNVIAEQDERRRR 116
>ASPGD|ASPL0000042752 [details] [associations]
symbol:rrp5 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
EMBL:AACD01000034 eggNOG:COG0539 KO:K14792 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 OMA:FYGNVRG RefSeq:XP_659751.1
ProteinModelPortal:Q5BBD3 STRING:Q5BBD3
EnsemblFungi:CADANIAT00008825 GeneID:2875769 KEGG:ani:AN2147.2
Uniprot:Q5BBD3
Length = 1780
Score = 127 (49.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 47/157 (29%), Positives = 82/157 (52%)
Query: 290 VRQIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSRVNNFTELKE--KVGRRM 346
+ Q+K +N+ I + + GGL + + AF+ ++L + E K+ +VG+ +
Sbjct: 1221 MEQVK-VNDIIRGFVRQVSDGGLFVTVGHNIVAFIRISDLSD--SYLKEWKDSFQVGQLV 1277
Query: 347 YVQITRINEDTNDLILSERE--------AWATL-NLREGTLLEGTVKKIYPYGAQIRI-G 396
++T ++ + L +S ++ A TL +L+ G ++ G V+K+ +GA I I G
Sbjct: 1278 KGRVTLVDPENKKLQMSLKDSVLDPSYKAPITLYDLKPGQIVTGKVRKVEQFGAFIVIDG 1337
Query: 397 DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433
SN SGL H + M+ TRV L EG+ VK V+K
Sbjct: 1338 SSNVSGLCHRTEMADTRVEDARTLYEEGDAVKAKVLK 1374
Score = 54 (24.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/76 (27%), Positives = 33/76 (43%)
Query: 153 DVDDKVGEDKVSVEYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTM-LTKEVLPLYDK 211
D +K G + + PG ++G V S N + + +++ +L G + LT L K
Sbjct: 135 DKREKKGVRIEGLSFKRLVPGALILGQVSSINAHNIGISLPNNLTGYVPLTSVSKTLESK 194
Query: 212 EMDFLLCDLKKDAEEF 227
L D D EEF
Sbjct: 195 IEKMLEEDEDSDEEEF 210
>UNIPROTKB|E2R5A7 [details] [associations]
symbol:E2R5A7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:AAEX03009301
Ensembl:ENSCAFT00000002937 GeneTree:ENSGT00510000047363 OMA:GERIWCK
Uniprot:E2R5A7
Length = 238
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I S + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGSRKQGLVHRTHMSSCRVDKSSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEE 467
D K+SLS+ + G + D V E EE
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVIIEQEE 109
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 103 (41.3 bits), Expect = 0.00018, P = 0.00018
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVL 430
+++ G L+G V I +GA + + + ++GL+HIS ++ V ++D+L G+ V V
Sbjct: 1 MSIEVGNKLQGKVTGITNFGAFVEL-EGGKTGLVHISEVADNYVKDINDILTVGDEVTVK 59
Query: 431 VVKSMFPDKISLSIADLESEP 451
V+ KI LSI P
Sbjct: 60 VMNIGDDGKIGLSIRKAVDRP 80
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 39/135 (28%), Positives = 66/135 (48%)
Query: 337 ELKEKVGRRMYVQ---ITRINEDTNDLILSEREA-WATL-NLREGTLLEGTVKKIYPYGA 391
E+ E G ++ + I +I D I + W+ + EG + G V KI +GA
Sbjct: 581 EIVEVSGAKVDINDDGIIKIASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVKIVDFGA 640
Query: 392 QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451
+ R GL+H+S + R+ SD+L EG+ VKV ++ K+ LS+ ++ E
Sbjct: 641 FVNFF-GKRDGLVHVSQIENRRLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQET 699
Query: 452 GLFVSDKERVFSEAE 466
G + +++ SEAE
Sbjct: 700 GEEIVPEKKEASEAE 714
>UNIPROTKB|F1N7K4 [details] [associations]
symbol:F1N7K4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR003029
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343
GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 EMBL:DAAA02041831
GeneTree:ENSGT00510000047363 IPI:IPI00908186
ProteinModelPortal:F1N7K4 Ensembl:ENSBTAT00000001878 OMA:YCKVIST
NextBio:20899911 Uniprot:F1N7K4
Length = 237
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVCVKLIGREM 76
Query: 436 FPDKISLSIADLESEPGLFVS-DKERVFSEAEE 467
D+I +S++ + G D V E EE
Sbjct: 77 KDDRIKVSLSMKVVDQGTVKDLDPNNVIIEQEE 109
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 127 (49.8 bits), Expect = 0.00036, P = 0.00036
Identities = 71/285 (24%), Positives = 128/285 (44%)
Query: 178 GVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDL--KKDAEEFMVRGKMGI 235
G V + ++ +D+N+ +G L VL + +K ++L DL K F+
Sbjct: 1068 GFVNAIGKSHVDINMSTIKVGDELPGRVLKIAEK---YVLLDLGNKVTGISFITDA---- 1120
Query: 236 VKDDDAIAMSGGSGPGRPVVETGTVLFAEVLGRT--LSGRPLLSTRRLFRKMAWHRVRQI 293
+ D V+ T TVL + + LS RP + R + H +
Sbjct: 1121 LNDFSLTLKEAFEDKINNVIPT-TVLSVDEQNKKIELSLRPATAKTRSIKS---HE--DL 1174
Query: 294 KQLNEPIEVKFTEWNTGGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYV--QI 350
KQ E ++ N G+ + + AF+P ++L + E K+ YV ++
Sbjct: 1175 KQ-GEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSD--SYLKEWKKFYKPMQYVLGKV 1231
Query: 351 TRINEDTN-DLILSEREAWATL-------NLREGTLLEGTVKKIYPYGAQIRIGDS-NRS 401
+ED+ L L E E L +++ G + EGT+K + +G +++ ++ N +
Sbjct: 1232 VTCDEDSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKSVTDFGVFVKLDNTVNVT 1291
Query: 402 GLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK--ISLSI 444
GL HI+ ++ + +S L G+RVK +V+K+ P+K ISLS+
Sbjct: 1292 GLAHITEIADKKPEDLSALFGVGDRVKAIVLKTN-PEKKQISLSL 1335
>UNIPROTKB|Q3T0H4 [details] [associations]
symbol:ZCCHC17 "Zinc finger, CCHC domain containing 17"
species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
PROSITE:PS50158 SMART:SM00343 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:51538 eggNOG:COG1185
HOGENOM:HOG000113809 HOVERGEN:HBG080343 OrthoDB:EOG4Z62PQ
OMA:MSASRVE EMBL:DAAA02006263 GeneTree:ENSGT00510000047363
EMBL:DAAA02006260 EMBL:DAAA02006261 EMBL:DAAA02006258
EMBL:DAAA02006259 EMBL:DAAA02006262 EMBL:BC102395 EMBL:BT025465
IPI:IPI00701421 RefSeq:NP_001029824.1 UniGene:Bt.2830 SMR:Q3T0H4
Ensembl:ENSBTAT00000022373 GeneID:538816 KEGG:bta:538816
InParanoid:Q3T0H4 NextBio:20877600 Uniprot:Q3T0H4
Length = 241
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKK 471
D K+SLS+ + G + D V E EE ++
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVIIEQEERRRR 113
>UNIPROTKB|F6XYB1 [details] [associations]
symbol:ZCCHC17 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
PROSITE:PS50158 SMART:SM00343 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:51538 OMA:MSASRVE
Ensembl:ENSCAFT00000007577 EMBL:AAEX03001670
GeneTree:ENSGT00510000047363 RefSeq:XP_535332.2
ProteinModelPortal:F6XYB1 GeneID:478157 KEGG:cfa:478157
Uniprot:F6XYB1
Length = 241
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKK 471
D K+SLS+ + G + D V E EE ++
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVIIEQEERRRR 113
>UNIPROTKB|Q9NP64 [details] [associations]
symbol:ZCCHC17 "Nucleolar protein of 40 kDa" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0046872 EMBL:CH471059 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:AL451070 GO:GO:0022625
EMBL:AF247661 EMBL:AF151077 EMBL:AF151085 EMBL:AK001929
EMBL:AK022506 EMBL:AK024049 EMBL:BC000685 EMBL:BC007446
EMBL:BC050609 IPI:IPI00099810 IPI:IPI00383254 RefSeq:NP_057589.2
UniGene:Hs.524094 PDB:2CQO PDBsum:2CQO ProteinModelPortal:Q9NP64
SMR:Q9NP64 IntAct:Q9NP64 MINT:MINT-1447770 STRING:Q9NP64
PhosphoSite:Q9NP64 DMDM:73921227 PaxDb:Q9NP64 PRIDE:Q9NP64
DNASU:51538 Ensembl:ENST00000344147 Ensembl:ENST00000373714
GeneID:51538 KEGG:hsa:51538 UCSC:uc001bsp.1 CTD:51538
GeneCards:GC01P031769 HGNC:HGNC:30246 HPA:HPA028280
neXtProt:NX_Q9NP64 PharmGKB:PA142670539 eggNOG:COG1185
HOGENOM:HOG000113809 HOVERGEN:HBG080343 InParanoid:Q9NP64
OrthoDB:EOG4Z62PQ PhylomeDB:Q9NP64 ChiTaRS:ZCCHC17
EvolutionaryTrace:Q9NP64 GenomeRNAi:51538 NextBio:55305
ArrayExpress:Q9NP64 Bgee:Q9NP64 CleanEx:HS_ZCCHC17
Genevestigator:Q9NP64 GermOnline:ENSG00000121766 Uniprot:Q9NP64
Length = 241
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKK 471
D K+SLS+ + G + D V E EE ++
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVIIEQEERRRR 113
>UNIPROTKB|E2R379 [details] [associations]
symbol:E2R379 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
SMART:SM00343 GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
InterPro:IPR022967 SMART:SM00316 Ensembl:ENSCAFT00000007577
Uniprot:E2R379
Length = 244
Score = 115 (45.5 bits), Expect = 0.00040, P = 0.00040
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKK 471
D K+SLS+ + G + D V E EE ++
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVIIEQEERRRR 113
>RGD|1565267 [details] [associations]
symbol:Zcchc17 "zinc finger, CCHC domain containing 17"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IEA;ISO] InterPro:IPR001878
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
SMART:SM00343 RGD:1565267 GO:GO:0005730 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:CH473968 GO:GO:0022625
CTD:51538 OrthoDB:EOG4Z62PQ OMA:MSASRVE
GeneTree:ENSGT00510000047363 IPI:IPI00190123 RefSeq:NP_001102737.1
UniGene:Rn.63831 Ensembl:ENSRNOT00000017156 GeneID:500555
KEGG:rno:500555 UCSC:RGD:1565267 NextBio:706546 Uniprot:D3ZCQ7
Length = 241
Score = 115 (45.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKK 471
D K+SLS+ + G + D V E EE ++
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVIIEQEERRRR 113
Score = 37 (18.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 466 EEMAKKYRQKLPAVSVSPKSES 487
E+ KK+R + + SP SES
Sbjct: 189 EKKKKKHRDRKSSDCDSPDSES 210
>MGI|MGI:1919955 [details] [associations]
symbol:Zcchc17 "zinc finger, CCHC domain containing 17"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR003029
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343
MGI:MGI:1919955 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0022625 CTD:51538
eggNOG:COG1185 HOGENOM:HOG000113809 HOVERGEN:HBG080343
ChiTaRS:ZCCHC17 EMBL:AJ272345 EMBL:AY253297 EMBL:BC018382
EMBL:BC049231 IPI:IPI00113633 IPI:IPI00648047 RefSeq:NP_694800.1
UniGene:Mm.297196 ProteinModelPortal:Q9ESX4 SMR:Q9ESX4 PRIDE:Q9ESX4
Ensembl:ENSMUST00000167964 GeneID:619605 KEGG:mmu:619605
InParanoid:Q9ESX4 OMA:MSASRVE NextBio:414767 Bgee:Q9ESX4
CleanEx:MM_ZCCHC17 Genevestigator:Q9ESX4
GermOnline:ENSMUSG00000028772 Uniprot:Q9ESX4
Length = 241
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 17 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 76
Query: 436 FPD--KISLSIADLESEPGLFVSDKERVFSEAEEMAKK 471
D K+SLS+ + G + D V E EE ++
Sbjct: 77 KNDRIKVSLSMKVVNQGTGKDL-DPNNVVIEQEERRRR 113
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 121 (47.7 bits), Expect = 0.00055, P = 0.00055
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
T + G + EGTV KI +GA ++I N GL+HIS +++ RV +V D L EG+ ++V
Sbjct: 619 TAEVELGKVYEGTVVKITDFGAFVQILP-NTQGLVHISQIAQERVENVRDYLEEGQVIRV 677
Query: 430 LVVKSMFPDKISLSIADLE 448
V++ ++ LS+ ++
Sbjct: 678 KVIEIDRQGRVRLSMKQID 696
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 95 (38.5 bits), Expect = 0.00065, P = 0.00065
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G ++ G V I YGA + + D+ GL+HIS ++ V + D L G+ V+V V+ S+
Sbjct: 8 GVVVTGKVTGIQDYGAFVAL-DAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKVL-SI 65
Query: 436 FPD--KISLSIADLESEPG--LFVSDKERVFSEAEE 467
+ K+SLS+ + + G L + E F+ E
Sbjct: 66 DEEHRKMSLSLKAAKRKQGRILIPNPSENGFNTLRE 101
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 111 (44.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 30/98 (30%), Positives = 53/98 (54%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRI-GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVL 430
+L+ G + EGTV +G +++ G N SGL H S +S V +V L G+RVKV
Sbjct: 1232 DLQIGDIFEGTVTSTTDFGVFVKLDGTVNVSGLCHHSEISENDVDNVKSLFGTGDRVKVK 1291
Query: 431 VVKSMFPDKISLSIADLESEPGLFVSDKERVFSEAEEM 468
++K + +K LS+ + F++D + ++ E++
Sbjct: 1292 ILK-IDSEKRQLSLG---MKASYFITDSGKEDNDDEDV 1325
Score = 62 (26.9 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369
G +++ L+AFLPK E+ K+G+ + V+I +N++ L+++ +++
Sbjct: 598 GCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQIVKVRILDVNKEQKRLVVTLKQSSE 657
Query: 370 TLNLREGTL 378
N ++ +
Sbjct: 658 LSNAQKNEI 666
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 514 474 0.0010 118 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 611 (65 KB)
Total size of DFA: 264 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.93u 0.37s 40.30t Elapsed: 00:00:03
Total cpu time: 39.93u 0.38s 40.31t Elapsed: 00:00:03
Start: Tue May 21 07:31:55 2013 End: Tue May 21 07:31:58 2013