BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010232
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G + +G V K+ +GA + + + GL+H+S +S RV SD+L EG+ VKV ++
Sbjct: 638 GKIYDGKVVKVVDFGAFVNFFGA-KDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFD 696
Query: 436 FPDKISLSIADLESEPGLFVSDKERVFSEA 465
K LS+ ++ E G +S KE EA
Sbjct: 697 DRGKTKLSMKVVDQETGEDLSKKEAAAEEA 726
>pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G + +G V K+ +GA + + + GL+H+S +S RV SD+L EG+ VKV ++
Sbjct: 638 GKIYDGKVVKVVDFGAFVNFFGA-KDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFD 696
Query: 436 FPDKISLSIADLESEPGLFVSDKERVFSEA 465
K LS+ ++ E G +S KE EA
Sbjct: 697 DRGKTKLSMKVVDQETGEDLSKKEAAAEEA 726
>pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G + +G V K+ +GA + + + GL+H+S +S RV SD+L EG+ VKV ++
Sbjct: 629 GKIYDGKVVKVVDFGAFVNFFGA-KDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFD 687
Query: 436 FPDKISLSIADLESEPGLFVSDKERVFSEA 465
K LS+ ++ E G +S KE EA
Sbjct: 688 DRGKTKLSMKVVDQETGEDLSKKEAAAEEA 717
>pdb|2EQS|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
Atp-Dependent Rna Helicase Dhx8
Length = 103
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 376 GTLLEGTVKKIYPYGAQIRI-GDSNR-SGLLHISNMSR-TRVTSVSDLLNEGERVKVLVV 432
G + G V I +G +++ G R GL+HIS + R RV +V+D++++G+RVKV V+
Sbjct: 13 GDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVL 72
Query: 433 KSMFPDKISLSIADLESEPG 452
S K SLS+ D++ E G
Sbjct: 73 -SFTGTKTSLSMKDVDQETG 91
>pdb|2CQO|A Chain A, Solution Structure Of The S1 Rna Binding Domain Of Human
Hypothetical Protein Flj11067
Length = 119
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV-LVVKSM 435
T+ +G V + YGA I+I + GL+H ++MS RV S++++ G++V V L+ + M
Sbjct: 24 TIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREM 83
Query: 436 FPDKISLSIA 445
D+I +S++
Sbjct: 84 KNDRIKVSLS 93
>pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
T + G + G V +I +GA + IG + GL+HIS ++ RV V+D L G+ V V
Sbjct: 622 TAEIEVGRVYTGKVTRIVDFGAFVAIG-GGKEGLVHISQIADKRVEKVTDYLQMGQEVPV 680
Query: 430 LVVKSMFPDKISLSI 444
V++ +I LSI
Sbjct: 681 KVLEVDRQGRIRLSI 695
>pdb|1SRO|A Chain A, S1 Rna Binding Domain, Nmr, 20 Structures
Length = 76
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G + G V +I +GA + IG + GL+HIS ++ RV V+D L G+ V V V++
Sbjct: 6 GRVYTGKVTRIVDFGAFVAIG-GGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 64
Query: 436 FPDKISLSIAD 446
+I LSI +
Sbjct: 65 RQGRIRLSIKE 75
>pdb|3AEV|A Chain A, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 275
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 375 EGTLLEGTVKKIYPYGAQIRIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433
EG + TVK+I+ YGA + + + + +HIS ++ T V ++ D L EG++V V++
Sbjct: 11 EGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIR 70
>pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
Pyrococcus Abyssi
Length = 274
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 375 EGTLLEGTVKKIYPYGAQIRIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433
EG + TVK+I+ YGA + + + + +HIS ++ T V ++ D L EG++V V++
Sbjct: 10 EGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIR 69
>pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form I
pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form 2
Length = 785
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
+L+ G +LEG V + +GA + IG ++ GL+HIS +S V +++ G+ VKV V
Sbjct: 651 DLKPGMVLEGVVTNVTNFGAFVDIG-VHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709
Query: 432 VKSMFP-DKISLSI 444
++ P +++ LS+
Sbjct: 710 MEVDIPRNRVGLSM 723
>pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
Pseudomonas Aeruginosa
Length = 780
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431
+L+ G +LEG V + +GA + IG ++ GL+HIS +S V +++ G+ VKV V
Sbjct: 652 DLKPGMVLEGVVTNVTNFGAFVDIG-VHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 710
Query: 432 VKSMFP-DKISLSI 444
++ P +++ LS+
Sbjct: 711 MEVDIPRNRVGLSM 724
>pdb|2K4K|A Chain A, Solution Structure Of Gsp13 From Bacillus Subtilis
Length = 130
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGE--RVKVLVVK 433
G++ G V + YGA + + D GL+HIS ++ V +++ L+ G+ +VKVL V
Sbjct: 8 GSVYTGKVTGLQAYGAFVAL-DEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVD 66
Query: 434 SMFPDKISLSIADLESEP 451
KISLSI ++ P
Sbjct: 67 EE-KGKISLSIRATQAAP 83
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSR----TRVTSVSDLLNEGERVKVLV 431
G + G+V K +GA + + + GLLHIS + + RV +V D+L G++V+V +
Sbjct: 668 GERILGSVVKTTTFGAFVSL-LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEI 726
Query: 432 VKSMFPDKISL 442
+ K+SL
Sbjct: 727 AEIDSRGKLSL 737
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSR----TRVTSVSDLLNEGERVKVLV 431
G + G+V K +GA + + + GLLHIS + + RV +V D+L G++V+V +
Sbjct: 668 GERILGSVVKTTTFGAFVSL-LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEI 726
Query: 432 VKSMFPDKISL 442
+ K+SL
Sbjct: 727 AEIDSRGKLSL 737
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 241 AIAMSGGSGPG-----RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVR 291
A+ SGG PG R VV TG +V LL + +KMAW VR
Sbjct: 9 AVMTSGGDSPGMNAAVRAVVRTGIHFGCDVFAVYEGYEGLLRGGKYLKKMAWEDVR 64
>pdb|1Q8K|A Chain A, Solution Structure Of Alpha Subunit Of Human Eif2
Length = 308
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 382 TVKKIYPYGAQIRIGDSNR-SGLLHISNMSRTRVTSVSDLLNEG--ERVKVLVV 432
V+ I GA + + + N G++H+S +SR R+ S++ L+ G E VKV+ V
Sbjct: 20 NVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRV 73
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 375 EGTLLEGTVKKIYPYGAQIRIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433
EG +L TVK+++ YG+ + + + L S +S V ++ D+L E +V V V++
Sbjct: 11 EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIR 70
>pdb|3SQ3|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
Length = 470
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|3SQ5|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
Length = 470
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|3SQ7|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
Length = 470
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|3SQ8|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
Length = 470
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 189 DVNVGADLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAM 244
D+ D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 24 DMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAM 80
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 195 DLLGT-MLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246
D+ GT L + +L + E+DFLL ++ E + G+ G + +A AM
Sbjct: 107 DIFGTETLKRSILFSFQYELDFLLRQFHQNVENITIVGQKGTIMPIEARAMDA 159
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 409 MSRTRVTSVSDLLNEGER--VKVLVVKSM-FPDKISLSIADLESEPGLFVSDKERVFSEA 465
M + R++ V + N ER V ++ + M F S+ I+D+ ++ L + SEA
Sbjct: 139 MGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKEQLITAPVGTTLSEA 198
Query: 466 EEMAKKYR-QKLPAV 479
E++ +KY+ +KLP V
Sbjct: 199 EKILQKYKIEKLPLV 213
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 286 AWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVN 333
A+H++ +K+ E + TE T +LT++ L KAE + VN
Sbjct: 88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,695,320
Number of Sequences: 62578
Number of extensions: 531721
Number of successful extensions: 1598
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 31
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)