BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010232
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 129/217 (59%), Gaps = 9/217 (4%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNN 334
+LS R++ ++AW R RQ++ + ++ K N GG++ +EGLR F+P S++++
Sbjct: 162 ILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVP----FSQISS 217
Query: 335 FTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLNLREGTLLEGTVKKIYPYGAQ 392
+ +E + + + ++ ++E+ + L++S R+A A L G+++ GTV+ + PYGA
Sbjct: 218 KSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 277
Query: 393 IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV-KSMFPDKISLSIADLESEP 451
I IG N GLLH+S +S RV+ ++ +L G+ +KV+++ ++SLS LE P
Sbjct: 278 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 335
Query: 452 GLFVSDKERVFSEAEEMAKKYRQKLPAVSVSPKSESL 488
G + + + VF +AEEMA+ +RQ++ +++ L
Sbjct: 336 GDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADML 372
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 17/227 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + N GG L RIEGLR F+P + + +R
Sbjct: 93 GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 152
Query: 332 VNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIY 387
E KE VG + ++ ++E+ N L+LS R A +N L ++ G+V+ I
Sbjct: 153 -----EAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIK 207
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIAD 446
PYGA I IG SGLLHIS +S + + + N + +KV+++ +ISLS
Sbjct: 208 PYGAFIDIG--GVSGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQ 265
Query: 447 LESEPGLFVSDKERVFSEAEEMAKKYRQKLPAVSVSPKSESLPTDTP 493
LE EPG + D++ V A+EMA+ +RQK A +++ +P + P
Sbjct: 266 LEPEPGAMLKDRDLVNEMADEMAEIFRQKRLA-----EAQGIPYEPP 307
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 10/209 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ LS RR+ AW RVRQ++ + + + N GG L RIEGLR F+P + + +R
Sbjct: 94 GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA--TLN-LREGTLLEGTVKKIYP 388
++ VG + ++ ++ED N L+LS R A +N L G ++ G V+ I P
Sbjct: 154 KAK----EDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKP 209
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
YGA I IG SGLLHIS +S + + + N + VKV+++ +ISLS L
Sbjct: 210 YGAFIDIGGV--SGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQL 267
Query: 448 ESEPGLFVSDKERVFSEAEEMAKKYRQKL 476
E EPG V + E V+ +AEEMA +YR+KL
Sbjct: 268 EPEPGDMVRNPEVVYEKAEEMAAQYREKL 296
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 26/257 (10%)
Query: 229 VRGKMGIVKDDDAIAMSGGSGPG-RPVVETGTVLFAEVLG---------------RTLSG 272
V GK+ ++ GG PG PV E G AE+ + G
Sbjct: 32 VHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDSAWDFLVTSEQNDEG 91
Query: 273 RPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRV 332
+ LS R+L + +W + ++++ + +E+ T N GG++ +EGLR F+P++ L+ +
Sbjct: 92 QVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKD 151
Query: 333 NNFTELKEKVGRRMYVQITRINEDTNDLILSER---EAWATLNLREGTLLEGTVKKIYPY 389
N + VG+ + I N+D N L+L++R +A + + G + EG V KI PY
Sbjct: 152 N----MDALVGQVLKAHILEANQDNNKLVLTQRRIQQAESMGKIAAGNIYEGKVAKIQPY 207
Query: 390 GAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLE 448
G + I +GLLH+S +S TRV S++ L G+ + V V + + ++ISLS LE
Sbjct: 208 GVFVEI--EGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYVQEIDEYKNRISLSTRILE 265
Query: 449 SEPGLFVSDKERVFSEA 465
+ PG V + + ++A
Sbjct: 266 TYPGELVEKFDEMMADA 282
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 10/209 (4%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +S R L + AW RV ++++ + ++VK T N GG+ +EGLRAF+P+ S
Sbjct: 90 GQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPR----SH 145
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLRE---GTLLEGTVKKIYP 388
+N +L G+ + V +N L+LSER+A T +RE G L+ G V + P
Sbjct: 146 LNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREIEVGQLINGKVTGLKP 205
Query: 389 YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADL 447
+G + +G + + LL I+ +S+ V V + G+ ++ LVV +ISLS L
Sbjct: 206 FGVFVDLGGA--TALLPINQISQKFVADVGAIFKIGDPIQALVVAIDNTKGRISLSTKVL 263
Query: 448 ESEPGLFVSDKERVFSEAEEMAKKYRQKL 476
E+ PG + + + + A + A++ R++L
Sbjct: 264 ENHPGEILENVAELQASAADRAERARKQL 292
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea
GN=rps1 PE=3 SV=1
Length = 263
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + ++V+ +N GG++ +EG+ F+P + L
Sbjct: 88 SRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHL-- 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
NNF++ + + +++ + E +N+LILS R A A+ NL G ++EG + +I
Sbjct: 146 --NNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQIT 203
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
PYG I+ G N GL+HIS ++ +V + G+ +K +++
Sbjct: 204 PYGLFIKAG--NLKGLVHISEINVKQVERIPSQFKIGDTIKAVII 246
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
GN=rps1 PE=3 SV=2
Length = 263
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 92/165 (55%), Gaps = 9/165 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
S + +LS RRL AW R+RQ+ + + V +N GG++ +EG+ F+P + L
Sbjct: 88 SKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHL-- 145
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW---ATLNLREGTLLEGTVKKIY 387
NF + ++ + + +++ + E +N+LILS R A A+ NL G ++EG + +I
Sbjct: 146 --GNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQIT 203
Query: 388 PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
PYG I++G N GL+HIS ++ + +S G+ +K +++
Sbjct: 204 PYGLFIKVG--NLKGLVHISEINIKNLEQISSQFKIGDTIKAVII 246
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 103/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW NL++GT+ +
Sbjct: 155 MRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNNLQKGTIRK 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G+ V V V+ M ++
Sbjct: 214 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRER 271
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 272 VSLSLKATQEDP 283
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 341 KVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIR 394
+VG + V++ ++ D + LS + + W G ++ G V K+ P+GA +R
Sbjct: 253 QVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ + GL+HIS ++ V ++ G+ V V+ + +ISLS+
Sbjct: 313 V-EEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 362
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 105/189 (55%), Gaps = 18/189 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN 333
+LS R + + AW +++ +V + GGL+ + G+R F+P + + + V
Sbjct: 81 VLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIVNGGLVVDL-GVRGFIPASLVEVHYVE 139
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAW----------ATLNLREGTLLEGTV 383
+FT+ K G+ + V+I ++ + N +ILS + A +L+EG ++EGTV
Sbjct: 140 DFTDYK---GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTV 196
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLS 443
+++ +GA + +G + GL+HIS +S RV S++L +G++VKV V+ S+ D +S
Sbjct: 197 QRLTDFGAFVNVGGVD--GLVHISQISHERVEQPSEVLEQGQKVKVKVL-SVDADTQRIS 253
Query: 444 IADLESEPG 452
++ ++PG
Sbjct: 254 LSIKAAQPG 262
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVK 384
RV +E+ E+ G+++ V++ ++ DT + LS + A W + ++ G + EG VK
Sbjct: 224 RVEQPSEVLEQ-GQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVK 282
Query: 385 KIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK-ISLS 443
++ +GA + I GL+H+S ++ V + +++L G+ VKV V++ +K ISLS
Sbjct: 283 RLVTFGAFVEIL-PGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLS 341
Query: 444 IAD 446
I +
Sbjct: 342 IKE 344
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 35/266 (13%)
Query: 212 EMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGPGR-PVVETGTV---------- 260
E F DL AE ++ +G + ++ D AI G GR P+ E G
Sbjct: 16 EESFAKTDL---AEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFGAKAKDGTLKVGD 72
Query: 261 ---LFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE 317
++ E + L G +LS + R+ +W R+ + E +E GG ++
Sbjct: 73 EVEVYVERIENAL-GEAVLSREKARREESWQRLEVKFEAGERVEGIIFNQVKGGFTVDLD 131
Query: 318 GLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILS----------ERE 366
G AFLP++++ R + + T L +I ++++ ++++S E+
Sbjct: 132 GAVAFLPRSQVDIRPIRDVTPLMHN---PQPFEILKMDKRRGNIVVSRRTVLEESRAEQR 188
Query: 367 AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGER 426
+ NL EG ++EG VK I YGA + +G + GLLH+++M+ RV S++LN G++
Sbjct: 189 SEIVQNLEEGQVVEGVVKNITDYGAFVDLGGID--GLLHVTDMAWRRVNHPSEILNIGQQ 246
Query: 427 VKVLVVK-SMFPDKISLSIADLESEP 451
VKV +++ + +ISL + LES+P
Sbjct: 247 VKVQIIRINQETHRISLGMKQLESDP 272
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 104/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ N+ IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F++ + G+ + +++ ++ N +ILS + A N L EG +
Sbjct: 140 TDFIEDFSDFE---GQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+EG V ++ +GA + IG + GL+H+S +S V S D+++ GE V V +KS+ D
Sbjct: 197 IEGKVARLTNFGAFVDIGGVD--GLVHVSELSHEHVKSPEDVVSIGETVNVK-IKSVDKD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 SERISLSIKD 263
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 293 IKQLNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQI 350
++ LNE IE K G I G+ + +EL E +G + V+I
Sbjct: 188 LESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Query: 351 TRINEDTNDLILSEREAWAT------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLL 404
+++D+ + LS ++ + EG ++EGTV ++ +GA + I GL+
Sbjct: 248 KSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIEGTVVRLANFGAFVEI-KPGVQGLV 306
Query: 405 HISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
HIS +S + + S S+ L G+ V V V+ + ++ISLSI
Sbjct: 307 HISEISHSHIGSPSEALEPGQVVSVKVLGVDVENERISLSI 347
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 18/184 (9%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS R + AW + + + E E + + GGL+ I G+R F+P + + + V
Sbjct: 80 ILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPASLVEAHFVE 138
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LNLREGTLLEGTV 383
+FT+ K G+ + + + ++ D N +ILS R + +L G++L+G V
Sbjct: 139 DFTDYK---GKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKV 195
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
+++ +GA + IG + GL+HIS +S + V SD++ EG+ VKV V+ ++ISL
Sbjct: 196 QRLTDFGAFVDIGGID--GLVHISQLSHSHVEKPSDVVEEGQEVKVKVLSVDRDNERISL 253
Query: 443 SIAD 446
SI D
Sbjct: 254 SIKD 257
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 104/211 (49%), Gaps = 23/211 (10%)
Query: 262 FAEVLGRTLS----------GRPLLSTRRLFRKMAWHRVRQIKQ---LNEPIEVKFTEWN 308
F + G+TLS R +LS R + ++ +++ Q + ++ K
Sbjct: 140 FTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLT 199
Query: 309 TGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367
G I G+ + ++L S V +++ E+ G+ + V++ ++ D + LS ++
Sbjct: 200 DFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEE-GQEVKVKVLSVDRDNERISLSIKDT 258
Query: 368 ----WATLN--LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLL 421
W + ++ G +LEGTV+++ +GA + I GL+HIS +S + + ++L
Sbjct: 259 LPGPWNQIGEKVKPGDVLEGTVQRLVSFGAFVEIL-PGVEGLVHISQISNKHIGTPHEVL 317
Query: 422 NEGERVKVLVVK-SMFPDKISLSIADLESEP 451
EG+ VKV V+ + ++ISLS+ +LE P
Sbjct: 318 EEGQTVKVKVLDVNENEERISLSMRELEETP 348
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
GR +LS +R + AW + +K+ +E ++ E GGL+ I GLR FLP + L
Sbjct: 98 GRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGGLILDI-GLRGFLPAS--LVE 154
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT----------LN-LREGTLLE 380
+ +L+ +G+ + +I ++++ N+++LS R AW LN L++G + +
Sbjct: 155 MRRVRDLQPYIGKEIEAKIIELDKNRNNVVLS-RRAWLEQTQSEVRSEFLNQLQKGAIRK 213
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G V I +GA + +G + GL+H+S +S + S+++ G V V V+ M ++
Sbjct: 214 GVVSSIVNFGAFVDLGGVD--GLVHVSELSWKHIDHPSEVVQVGNEVTVEVLDVDMDRER 271
Query: 440 ISLSIADLESEP 451
+SLS+ + +P
Sbjct: 272 VSLSLKATQEDP 283
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 341 KVGRRMYVQITRINEDTNDLILS----EREAWATLNLRE--GTLLEGTVKKIYPYGAQIR 394
+VG + V++ ++ D + LS + + W G ++ G V K+ P+GA +R
Sbjct: 253 QVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVR 312
Query: 395 IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
+ + GL+HIS ++ V ++ G+ V V+ + +ISLS+
Sbjct: 313 V-EEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSL 362
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 129/251 (51%), Gaps = 33/251 (13%)
Query: 225 EEFMVRGKMGIVKDDDAIAMSGGSGPGR-------PVVETGTVL---FAEVLGRTLSGRP 274
E+ +V+G++ +K+D I G GR + E G V+ ++ GR +GR
Sbjct: 38 EKTVVKGQVIEIKNDMVIVDVGLKNEGRIPKSEFLALPEVGDVVEVFIEKIEGR--NGRT 95
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS + ++ W ++ + E ++ GG + G+ AFLP +++ R +
Sbjct: 96 ILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIK 155
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTV 383
+ T + + + +I +++ +++++S R EA + ++EG +LEGTV
Sbjct: 156 DPTSI---MNIKQPFKILSMDKKLDNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTV 212
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK---I 440
K I YGA I +G + GLLH++++S RV S++L ++VKV+V+K F +K I
Sbjct: 213 KNITDYGAFIDLGSVD--GLLHLTDISWGRVNHPSEVLEFNQKVKVMVIK--FDEKTKRI 268
Query: 441 SLSIADLESEP 451
SL I L+S P
Sbjct: 269 SLGIKQLDSNP 279
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 129/251 (51%), Gaps = 33/251 (13%)
Query: 225 EEFMVRGKMGIVKDDDAIAMSGGSGPGR-------PVVETGTVL---FAEVLGRTLSGRP 274
E+ +V+G++ +K+D I G GR + E G V+ ++ GR +GR
Sbjct: 38 EKTVVKGQVIEIKNDIIIVDVGLKNEGRIPKSEFLALPEVGDVVEVFIEKIEGR--NGRT 95
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS + ++ W ++ + E ++ GG + G+ AFLP +++ R +
Sbjct: 96 ILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIK 155
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTV 383
+ T + + + +I +++ ++++S R EA + ++EG +LEGTV
Sbjct: 156 DPTSI---MNIKQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTV 212
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK---I 440
K I YGA I +G + GLLH++++S RV S++L+ ++VKV+V+K F +K I
Sbjct: 213 KNITDYGAFIDLGSVD--GLLHLTDISWGRVNHPSEVLDFNQKVKVMVIK--FDEKNKRI 268
Query: 441 SLSIADLESEP 451
SL I L+S P
Sbjct: 269 SLGIKQLDSNP 279
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 38/278 (13%)
Query: 191 NVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGP 250
N G +G +T E++ + +KE+ FL + K+D V K I DDD +
Sbjct: 302 NEGKIYVGASVTGEIIQVSEKEV-FLNINYKRDG----VIPKSEI--DDDGKDL------ 348
Query: 251 GRPVVETGTVLFAEVLG-RTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT 309
+ + G + A+++ + +LS + L R+ + +++ + + V E
Sbjct: 349 -KELFTVGDKIVAKIIKLKDADNYVVLSVKELQREQGYKEIKEAFENKTTLNVVVKEDVK 407
Query: 310 GGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQI---------TRINEDTND 359
GG++ +G+R F+P + + L V+N LKE +G+ V I T+I
Sbjct: 408 GGIIASYKGIRIFIPASHVELFHVDN---LKEYIGKSFDVAIIEYSTKKRQTKIVASRRA 464
Query: 360 LILSERE-----AWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV 414
L+ E+E W L EG ++EG VK++ +GA + I GLLH+S +S RV
Sbjct: 465 LLSKEKEKVEETVWN--KLEEGQVVEGEVKRLTDFGAFVEI--EGVDGLLHVSEISWGRV 520
Query: 415 TSVSDLLNEGERVKVLVVKSMFPD-KISLSIADLESEP 451
+D+L G+++KV V+ + K+SLS+ L P
Sbjct: 521 EKPADVLKIGDKIKVYVLSVDKENKKLSLSVKKLTENP 558
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 271 SGRPLLSTRR-LFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL- 328
S R LLS + + W+++ + + +E + G IEG+ L +E+
Sbjct: 461 SRRALLSKEKEKVEETVWNKLEE----GQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEIS 516
Query: 329 LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATLNLRE--GTLLEGT 382
RV ++ K+G ++ V + ++++ L LS ++ W + + G+++ G
Sbjct: 517 WGRVEKPADVL-KIGDKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGK 575
Query: 383 VKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKIS 441
V + +GA +++ + GL+HIS +S R+ SD LN GE +K +++ S KI
Sbjct: 576 VIRFADFGAFVKL-EPGVDGLVHISEISHKRIAKPSDALNVGEEIKAKILEVSSEEKKIG 634
Query: 442 LSIADLE 448
LSI ++E
Sbjct: 635 LSIREVE 641
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
++G V ++ +GA I IG + GL+H+S +S V + ++++ G+ VKV +KS+ D
Sbjct: 197 IDGKVARLTQFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSIGQDVKVK-IKSIDRD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQ-LNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+ R +LS + + ++ + Q+ Q LNE I+ K G I G+ + +E
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------LNLREGTLLEG 381
L E +G+ + V+I I+ DT + LS ++ T E +EG
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEG 284
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V ++ +GA + I GL+HIS ++ + + ++L G++V V ++ +++
Sbjct: 285 VVVRLANFGAFVEIA-PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERV 343
Query: 441 SLSI 444
SLSI
Sbjct: 344 SLSI 347
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 33/251 (13%)
Query: 225 EEFMVRGKMGIVKDDDAIAMSGGSGPGR----------PVVETGTVLFAEVLGRTLSGRP 274
E+ +V+G++ +K+D I G GR V + V ++ GR +GR
Sbjct: 38 EKTVVKGQVIEIKNDMIIVDVGLKNEGRIPKSEFLSLPEVGDVVEVFIEKIEGR--NGRT 95
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS + ++ W ++ + E ++ GG + G+ AFLP +++ R +
Sbjct: 96 ILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIK 155
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTV 383
+ T + + + +I +++ ++++S R EA + ++EG +LEG V
Sbjct: 156 DPTSI---MNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGMILEGVV 212
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK---I 440
K I YGA I +G + GLLH++++S RV S++L ++VKV+V+K F +K I
Sbjct: 213 KNITDYGAFIDLGSVD--GLLHLTDISWGRVNHPSEVLEFNQKVKVMVIK--FDEKTKRI 268
Query: 441 SLSIADLESEP 451
SL I L+S P
Sbjct: 269 SLGIKQLDSNP 279
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 33/251 (13%)
Query: 225 EEFMVRGKMGIVKDDDAIAMSGGSGPGR----------PVVETGTVLFAEVLGRTLSGRP 274
E+ +V+G++ +K+D I G GR V + V ++ GR +GR
Sbjct: 38 EKTVVKGQVIEIKNDMIIVDVGLKNEGRIPKSEFLSLPEVGDVVEVFIEKIEGR--NGRT 95
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
+LS + ++ W ++ + E ++ GG + G+ AFLP +++ R +
Sbjct: 96 ILSREKAVKEELWGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIK 155
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTV 383
+ T + + + +I +++ ++++S R EA + ++EG +LEG V
Sbjct: 156 DPTSI---MNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGIVLEGVV 212
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK---I 440
K I YGA I +G + GLLH++++S RV S++L ++VKV+V+K F +K I
Sbjct: 213 KNITDYGAFIDLGSVD--GLLHLTDISWGRVNHPSEVLEFNQKVKVMVIK--FDEKTKRI 268
Query: 441 SLSIADLESEP 451
SL I L+S P
Sbjct: 269 SLGIKQLDSNP 279
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
++G V ++ +GA I IG + GL+H+S +S V + ++++ G+ VKV +KS+ D
Sbjct: 197 IDGKVARLTQFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSIGQDVKVK-IKSIDRD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQ-LNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+ R +LS + + ++ + Q+ Q LNE I+ K G I G+ + +E
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------LNLREGTLLEG 381
L E +G+ + V+I I+ DT + LS ++ T E ++EG
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V ++ +GA + I GL+HIS ++ + + ++L G++V V ++ +++
Sbjct: 285 VVVRLANFGAFVEIA-PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERV 343
Query: 441 SLSI 444
SLSI
Sbjct: 344 SLSI 347
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
++G V ++ +GA I IG + GL+H+S +S V + ++++ G+ VKV +KS+ D
Sbjct: 197 IDGKVARLTQFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSIGQDVKVK-IKSIDRD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQ-LNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+ R +LS + + ++ + Q+ Q LNE I+ K G I G+ + +E
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------LNLREGTLLEG 381
L E +G+ + V+I I+ DT + LS ++ T E ++EG
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V ++ +GA + I GL+HIS ++ + + ++L G++V V ++ +++
Sbjct: 285 VVVRLANFGAFVEIA-PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERV 343
Query: 441 SLSI 444
SLSI
Sbjct: 344 SLSI 347
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
++G V ++ +GA I IG + GL+H+S +S V + ++++ G+ VKV +KS+ D
Sbjct: 197 IDGKVARLTQFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSIGQDVKVK-IKSIDRD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQ-LNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+ R +LS + + ++ + Q+ Q LNE I+ K G I G+ + +E
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------LNLREGTLLEG 381
L E +G+ + V+I I+ DT + LS ++ T E ++EG
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V ++ +GA + I GL+HIS ++ + + ++L G++V V ++ +++
Sbjct: 285 VVVRLANFGAFVEIA-PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERV 343
Query: 441 SLSI 444
SLSI
Sbjct: 344 SLSI 347
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 106/206 (51%), Gaps = 27/206 (13%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
SG +LS R+L + ++ +++ +E IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 SGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L G +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQAENDVKKASLLESLNAGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
++G V ++ +GA + IG + GL+H+S +S V S D+++ G+ V V VKS+ D
Sbjct: 197 IKGKVARLTNFGAFVDIGGVD--GLVHVSELSHEHVDSPEDVVSVGQEVDVK-VKSVEKD 253
Query: 439 --KISLSIAD-----LESEPGLFVSD 457
+ISLSI D ES G F D
Sbjct: 254 AERISLSIKDTLPTPFESIKGQFHED 279
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 311 GLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT 370
G I G+ + +EL + E VG+ + V++ + +D + LS ++ T
Sbjct: 208 GAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPT 267
Query: 371 ------LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEG 424
E ++EG V ++ +GA + I GL+HIS ++ + + + L G
Sbjct: 268 PFESIKGQFHEDDVIEGKVVRLANFGAFVEIA-PGVQGLVHISEIAHEHIGTPGEKLEPG 326
Query: 425 ERVKVLVVK-SMFPDKISLSI 444
++V V ++ ++ISLSI
Sbjct: 327 QQVNVKILGIDEENERISLSI 347
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+ G V ++ +GA I IG + GL+H+S +S V + ++++ G+ VKV +KS+ D
Sbjct: 197 IHGKVARLTQFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSIGQDVKVK-IKSIDRD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQ-LNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+ R +LS + + ++ + Q+ Q LNE I K G I G+ + +E
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------LNLREGTLLEG 381
L E +G+ + V+I I+ DT + LS ++ T E ++EG
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V ++ +GA + I GL+HIS ++ + + ++L G++V V ++ +++
Sbjct: 285 VVVRLANFGAFVEIA-PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERV 343
Query: 441 SLSI 444
SLSI
Sbjct: 344 SLSI 347
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ NE IE K TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTL 378
+ +F+ G+ + +++ ++ + N +ILS + N L EG +
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILSRKAVEQEENDAKKDQLLQSLNEGDV 196
Query: 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438
+ G V ++ +GA I IG + GL+H+S +S V + ++++ G+ VKV +KS+ D
Sbjct: 197 IHGKVARLTQFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSIGQDVKVK-IKSIDRD 253
Query: 439 --KISLSIAD 446
+ISLSI D
Sbjct: 254 TERISLSIKD 263
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQ-LNEP--IEVKFTEWNTGGLLTRIEGLRAFLPKAE 327
+ R +LS + + ++ + Q+ Q LNE I K G I G+ + +E
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 328 LLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWAT------LNLREGTLLEG 381
L E +G+ + V+I I+ DT + LS ++ T E ++EG
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
V ++ +GA + I GL+HIS ++ + + ++L G++V V ++ +++
Sbjct: 285 VVVRLANFGAFVEIA-PGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKILGIDEENERV 343
Query: 441 SLSI 444
SLSI
Sbjct: 344 SLSI 347
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + Q + ++ + GG +E +RAFLP + L
Sbjct: 80 GETLLSREKAKRHEAWLTLEQAYKDSKTVVGLINGKVKGGFTVELEDIRAFLPGS--LVD 137
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSER-----EAWATLNL-----REGTLLEG 381
+ E G+ + ++ ++++ N++++S R E A NL +EG ++ G
Sbjct: 138 IRPVRETMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSG 197
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKI 440
VK + YGA + +G + GLLHI++M+ RV S+++N G+ VK+ ++K ++
Sbjct: 198 IVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNIGDEVKIKILKFDREKIRV 255
Query: 441 SLSIADLESEPGLFVSDK 458
SL + L +P +S++
Sbjct: 256 SLGLKQLSDDPWTKISER 273
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 275 LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VN 333
LLS +RL + AW + + + ++ K GGL+ + G+R F+P + + R V+
Sbjct: 124 LLSKKRLDARKAWENLSFAE--GDTVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVS 181
Query: 334 NFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL----------NLREGTLLEGTV 383
+ + K K + Q+ I+ LILS + A L G ++EGTV
Sbjct: 182 DLNQFKNK---DIKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTV 238
Query: 384 KKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISL 442
++ +GA + +G + GL+H+S +S RV + +D+L +G++V V ++ +ISL
Sbjct: 239 ARLTDFGAFVDLGGVD--GLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKGRISL 296
Query: 443 SIADLESEPGLFVSDKERVFSEAEEMAKKYRQKLPAVSVSPKSESL 488
SI + P +D+ S E K+ + V + P E L
Sbjct: 297 SIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGL 342
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRIN 354
+ E +E G + G+ + +E+ RV N ++ K G ++ V+I ++
Sbjct: 230 VGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTK-GDKVDVKILALD 288
Query: 355 EDTNDLILS----EREAW--ATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISN 408
+ + LS +R W A + G++LEGTVK++ +GA + I GL+H+S
Sbjct: 289 TEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEIL-PGIEGLVHVSQ 347
Query: 409 MSRTRVTSVSDLLNEGERVKVLVVKSMFP--DKISLSIADLESEP 451
+S R+ + S++L G++V+V V+ + P ++ISLS+ LE +P
Sbjct: 348 ISNKRIENPSEVLKSGDKVQVKVL-DIKPAEERISLSMKALEEKP 391
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 101/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + Q + +E + GG + +RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWLILEQAHEKSETVIGIINGKVKGGFTVELNEIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTIHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLESLQEGIEIK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V ++K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEINVKILKFDKERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + +S++
Sbjct: 255 VSLGLKQLGEDPWIAISNR 273
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LS 330
G LS + R AW + + + E ++ E GG + +RAFLP + + +
Sbjct: 76 GETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERVKGGFTVDLNSVRAFLPGSLVDVK 135
Query: 331 RVNNFTELKEKVGRRMYVQITRINEDTNDLILSER---------EAWATLN-LREGTLLE 380
V + L++K + +I ++++ N++++S R E A L L+EG ++
Sbjct: 136 PVRDPGYLEDK---EIDFKIIKMDQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIK 192
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G +K I YGA + +G + GLLHI++M+ RV SDLLN G+ V V V+K +
Sbjct: 193 GVIKNITDYGAFVDLGGVD--GLLHITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKR 250
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 251 VSLGMKQLADDP 262
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + E + GG + G+RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTLHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + ++ +
Sbjct: 255 VSLGLKQLGEDPWVAIAKR 273
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + E + GG + G+RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTLHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + ++ +
Sbjct: 255 VSLGLKQLGEDPWVAIAKR 273
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + E + GG + G+RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTLHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + ++ +
Sbjct: 255 VSLGLKQLGEDPWVAIAKR 273
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + E + GG + G+RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTLHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + ++ +
Sbjct: 255 VSLGLKQLGEDPWVAIAKR 273
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + + + GG + G+RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWLMLEKAYEESATVTGVINGKVKGGFTVELNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTLHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + V V+K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + ++ +
Sbjct: 255 VSLGLKQLGEDPWVAIAKR 273
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LS + R +W + +E ++ GG + G+RAFLP + + R
Sbjct: 80 GETKLSREKAKRAESWIVLEAAFAADEVVKGVINGKVKGGFTVDVNGIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + T L+ G+ + ++ ++++ N++++S R N L+EG ++
Sbjct: 140 PVRDTTHLE---GKELEFKVIKLDQKRNNVVVSRRSVLEAENSAEREALLESLQEGQQVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ R+ S+++N G+ + V V+K ++
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRIKHPSEIVNVGDEIDVKVLKFDRERNR 254
Query: 440 ISLSIADLESEP 451
+SL + L +P
Sbjct: 255 VSLGLKQLGEDP 266
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 368 WATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERV 427
+A+L+ +G+++ GTVK++ GA I +GD + G+L S +SR RV ++L EGE V
Sbjct: 444 YASLH-EKGSIVRGTVKEVDAKGAVISLGD-DIEGILKASEISRDRVEDARNVLKEGEEV 501
Query: 428 KVLVV 432
+ ++
Sbjct: 502 EAKII 506
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 100/199 (50%), Gaps = 17/199 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G LLS + R AW + + + +E + GG + +RAFLP + + R
Sbjct: 80 GETLLSREKAKRHEAWLILEKAHEKSETVIGIINGKVKGGFTVELNDIRAFLPGSLVDVR 139
Query: 332 -VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN----------LREGTLLE 380
V + L+ G+ + ++ ++++ N++++S R + N L+EG ++
Sbjct: 140 PVRDTIHLE---GKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMHVK 196
Query: 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDK 439
G VK + YGA + +G + GLLHI++M+ RV S+++N G+ + + ++K +
Sbjct: 197 GIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPSEIVNVGDEINIKILKFDRERTR 254
Query: 440 ISLSIADLESEPGLFVSDK 458
+SL + L +P + +S +
Sbjct: 255 VSLGLKQLGEDPWIAISKR 273
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 83/153 (54%), Gaps = 15/153 (9%)
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW- 368
GGL I +RAFLP + L V + G+ + ++ ++++ N++++S R
Sbjct: 119 GGLTVMISSIRAFLPGS--LVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLE 176
Query: 369 ATL---------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
ATL NL+EG++++G VK I YGA + +G + GLLHI++++ RV S+
Sbjct: 177 ATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGID--GLLHITDLAWRRVKHPSE 234
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
+L G+ V+ V+K ++SL + L +P
Sbjct: 235 VLEVGQEVEAKVLKFDQEKQRVSLGMKQLGEDP 267
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 21/219 (9%)
Query: 248 SGPGR----PVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVK 303
+GPGR V +T V + G +LS + R+ +W ++ + Q NE +
Sbjct: 63 AGPGRDNEIKVGDTVEVFLDRI--ENALGEAVLSRDKARREESWGKLEKAFQNNEKVFGV 120
Query: 304 FTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363
GG ++G AFLP++++ + ++ + QI +++ ++++S
Sbjct: 121 IFNQVKGGFTVDLDGAVAFLPRSQV--DIRPIRDVAPLMNNSQPFQILKMDRRRGNIVVS 178
Query: 364 EREAWA----------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR 413
R NL EG +++G VK I YGA + +G + GLLH+++++ R
Sbjct: 179 RRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGID--GLLHVTDIAWRR 236
Query: 414 VTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
V +++L G+ VKV ++K + +ISL + L +P
Sbjct: 237 VNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDP 275
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 88/161 (54%), Gaps = 17/161 (10%)
Query: 310 GGLLTRIEGLRAFLPKAELLSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAW 368
GG + G+RAFLP + + R V + T L+ G+ + ++ ++++ N++++S R
Sbjct: 13 GGFTVELNGIRAFLPGSLVDVRPVRDTTHLE---GKELEFKVIKLDQKRNNVVVSRRAVI 69
Query: 369 ATL----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS 418
+ NL+EG ++G VK + YGA + +G + GLLHI++M+ RV S
Sbjct: 70 ESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVD--GLLHITDMAWKRVKHPS 127
Query: 419 DLLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDK 458
+++N G+ + V V+K ++SL + L +P + ++ +
Sbjct: 128 EIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKR 168
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 310 GGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369
GG + G+RAFLP + + +R E +G+ + ++ ++++ N++++S R
Sbjct: 118 GGFTVELNGVRAFLPGSLVDTRPAR--EADHLLGKELEFKVIKLDQKRNNVVVSRRAVIE 175
Query: 370 TLN----------LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSD 419
+ N L EG+ ++G VK + YGA + +G + GLLHI++M+ RV S+
Sbjct: 176 SENSQEREQVLENLVEGSEVKGVVKNLTEYGAFVDLGGVD--GLLHITDMAWKRVKHPSE 233
Query: 420 LLNEGERVKVLVVK-SMFPDKISLSIADLESEPGLFVSDKERVFSE 464
++N G+ V V V+K ++SL + L +P +++ V S+
Sbjct: 234 IVNVGDEVTVKVLKFDKDRTRVSLGLKQLGQDPWAAIAENHPVNSK 279
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 15/187 (8%)
Query: 276 LSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNF 335
LS + ++ W ++ I E ++ GG + G+ AFLP +++ V
Sbjct: 100 LSREKAIKEELWGQLELICSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQV--DVRPI 157
Query: 336 TELKEKVGRRMYVQITRINEDTNDLILSER--------EAWATL--NLREGTLLEGTVKK 385
+ + R +I +++ ++++S R EA + ++EG +LEGTVK
Sbjct: 158 KDPSSIMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMILEGTVKN 217
Query: 386 IYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSI 444
I YGA I +G + GLLH++++S RV S++L ++VKV+V+K + +ISL +
Sbjct: 218 ITDYGAFIDLGSVD--GLLHLTDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGM 275
Query: 445 ADLESEP 451
L+ P
Sbjct: 276 KQLDYNP 282
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 255 VETGTVLFAEVLGRTLSGRP------LLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN 308
V+ G VL VL R + G+ L+S +RL + AW ++ + + E + VK T
Sbjct: 62 VKVGEVLDVLVL-RQVVGKDTDTVTYLVSKKRLEARKAWDKL--VGREEEVVTVKGTRAV 118
Query: 309 TGGLLTRIEGLRAFLPKAELLSRVNNFTELKEK-VGRRMYVQITRINEDTNDLILSEREA 367
GGL EG+R F+P + L +R F E+ VG+ +I +N N ILS RE
Sbjct: 119 KGGLSVEFEGVRGFIPASMLDTR---FVRNAERFVGQEFDTKIKEVNAKENRFILSRREV 175
Query: 368 WATL----------NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV 417
L G ++ G V +I +GA I +G + GL+H++ +S R S
Sbjct: 176 VEAATAAARAEVFGKLAVGDVVTGKVARITSFGAFIDLGGVD--GLVHLTELSHERNVSP 233
Query: 418 SDLLNEGERVKVLVV 432
++ GE ++V ++
Sbjct: 234 KSVVTVGEEIEVKIL 248
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREA----WATL--NLREGTLLEGTVKKIYPYGAQIRI 395
VG + V+I +NE+ + LS + W + L +G ++EGTVK++ +GA + +
Sbjct: 239 VGEEIEVKILDLNEEEGRVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEV 298
Query: 396 GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK-SMFPDKISLSIADLESEP 451
GL+H+S +S R+ + + L G+ V+V V++ + +++SLSI LE P
Sbjct: 299 -LPGIDGLVHVSQISHKRIENPKEALKVGQEVQVKVLEVNADAERVSLSIKALEERP 354
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 103/190 (54%), Gaps = 22/190 (11%)
Query: 271 SGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLS 330
+G +LS R+L + ++ +++ +E IE + TE GGL+ + G R F+P A L+S
Sbjct: 82 TGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV-GQRGFVP-ASLIS 139
Query: 331 R--VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATL-----------NLREGT 377
+ +F+ G+ + +++ ++ + N +ILS R+A L +L EG
Sbjct: 140 TDFIEDFSVFD---GQTIRIKVEELDPENNRVILS-RKAVEQLENDAKKASILDSLNEGD 195
Query: 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF- 436
+++G V ++ +GA I IG + GL+H+S +S V + ++++ GE VKV V
Sbjct: 196 VIDGKVARLTNFGAFIDIGGVD--GLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKD 253
Query: 437 PDKISLSIAD 446
++ISLSI D
Sbjct: 254 SERISLSIKD 263
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
E ++EGTV ++ +GA + I S + GL+HIS + + S +++L G++V V ++
Sbjct: 276 FHEDDVIEGTVVRLANFGAFVEIAPSVQ-GLVHISEIDHKHIGSPNEVLEPGQQVNVKIL 334
Query: 433 K-SMFPDKISLSI 444
++ISLSI
Sbjct: 335 GIDEDNERISLSI 347
>sp|B3EAF2|PNP_GEOLS Polyribonucleotide nucleotidyltransferase OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=pnp PE=3 SV=1
Length = 703
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
T + EG L GTVKKI +GA + + GL+HIS + TRV +V+D+LNEG++V V
Sbjct: 618 TDEVEEGKLYMGTVKKIMEFGAFVEV-LPGTDGLVHISELDETRVKNVTDILNEGDKVLV 676
Query: 430 LVVKSMFPDKISLS 443
+ KI LS
Sbjct: 677 KCIGVDKQGKIKLS 690
>sp|Q2LWT4|PNP_SYNAS Polyribonucleotide nucleotidyltransferase OS=Syntrophus
aciditrophicus (strain SB) GN=pnp PE=3 SV=1
Length = 705
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 368 WATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERV 427
W T + G + GTVKK+ +GA + I GLLHIS +++ RV V+D++NEG+ V
Sbjct: 622 WLTEDAEVGKIYRGTVKKVVDFGAFVEILPGT-EGLLHISQLAKERVNKVTDIVNEGDEV 680
Query: 428 KVLVVKSMFPDKISLS 443
V V++ KI LS
Sbjct: 681 IVKVLEVDKQGKIRLS 696
>sp|B2S4C3|PNP_TREPS Polyribonucleotide nucleotidyltransferase OS=Treponema pallidum
subsp. pallidum (strain SS14) GN=pnp PE=3 SV=1
Length = 702
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 14/113 (12%)
Query: 353 INEDTNDLI-LSEREAWATLNL-----------REGTLLEGTVKKIYPYGAQIRIGDSNR 400
IN D++ + +S R+A + + R G + +G VK+I +GA + I +
Sbjct: 585 INTDSDGTVTVSGRDAQSVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEI-FPGK 643
Query: 401 SGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD-LESEPG 452
GL H+S +SR+RV+ VSD+L EG+R+ V ++ +++LS D LE + G
Sbjct: 644 EGLCHVSKLSRSRVSKVSDVLQEGQRICVKLIDIDRMGRLNLSYIDALEGKSG 696
>sp|O83856|PNP_TREPA Polyribonucleotide nucleotidyltransferase OS=Treponema pallidum
(strain Nichols) GN=pnp PE=3 SV=1
Length = 702
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 14/113 (12%)
Query: 353 INEDTNDLI-LSEREAWATLNL-----------REGTLLEGTVKKIYPYGAQIRIGDSNR 400
IN D++ + +S R+A + + R G + +G VK+I +GA + I +
Sbjct: 585 INTDSDGTVTVSGRDAQSVFDAKVAVVGLTEDPRVGRVYQGVVKRIVEFGAFVEI-FPGK 643
Query: 401 SGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD-LESEPG 452
GL H+S +SR+RV+ VSD+L EG+R+ V ++ +++LS D LE + G
Sbjct: 644 EGLCHVSKLSRSRVSKVSDVLQEGQRICVKLIDIDRMGRLNLSYIDALEGKSG 696
>sp|B1Y823|PNP_LEPCP Polyribonucleotide nucleotidyltransferase OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=pnp PE=3 SV=1
Length = 767
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 342 VGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIGDSNRS 401
+G + I + D +L +R A T G + EG V KI +GA I I +
Sbjct: 591 IGEDGTITIASTDADKAEL-AKKRIADITAEAEIGKVYEGPVVKILDFGALINI-LPGKD 648
Query: 402 GLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451
GLLHIS ++ RV V+D L EG+ VKV V+++ +I LS+ L P
Sbjct: 649 GLLHISQIAHQRVEKVTDFLTEGQVVKVKVLETDEKGRIKLSMKALIERP 698
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpsA PE=3 SV=1
Length = 569
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 272 GRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR 331
G+ +LS + R+ W + + ++ + T GGL+ I G+ AFLP +++ ++
Sbjct: 109 GKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-GMEAFLPGSQIDNK 167
Query: 332 VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNL-REGTLLE---------G 381
L + VG+ +I +IN D ++++S RE + ++ L+E G
Sbjct: 168 --KIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRKG 225
Query: 382 TVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432
VK I +G + + GLLHI++M+ R+ S+++ + ++V+++
Sbjct: 226 IVKNITDFGVFLDL--DGIDGLLHITDMTWKRIRHPSEMVELNQELEVIIL 274
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 316 IEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA----WATL 371
IEGL + + +V++ +EL +K G + I +++++ + L ++ W +
Sbjct: 415 IEGL-IHISDMSWIKKVSHPSELFKK-GNTVEAVILSVDKESKKITLGVKQLTPNPWDEI 472
Query: 372 NLR--EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKV 429
+ G+ + G V KI +GA + + + GL+H+S +S + D+L+ G++V
Sbjct: 473 EVMFPVGSDISGVVTKITAFGAFVEL-QNGIEGLIHVSELSEKPFAKIEDVLSIGDKVSA 531
Query: 430 LVVKSMFPD--KISLSIADL 447
V+K + PD K+SLSI +
Sbjct: 532 KVIK-LDPDHKKVSLSIKEF 550
>sp|A2SFM2|PNP_METPP Polyribonucleotide nucleotidyltransferase OS=Methylibium
petroleiphilum (strain PM1) GN=pnp PE=3 SV=1
Length = 751
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435
G + EG V KI +GA + I + GLLHIS ++ RV V+D L EG+ VKV V+++
Sbjct: 624 GKVYEGPVTKILDFGALVNI-LPGKDGLLHISQIAHQRVEKVTDFLTEGQIVKVKVLETD 682
Query: 436 FPDKISLSIADLESEPGLFVSDK 458
+I LS+ L P +V ++
Sbjct: 683 EKGRIKLSLKALLERPEGYVEEE 705
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,959,335
Number of Sequences: 539616
Number of extensions: 8542494
Number of successful extensions: 21266
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 20386
Number of HSP's gapped (non-prelim): 932
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)