Query 010232
Match_columns 514
No_of_seqs 354 out of 2400
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 22:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 1E-39 3.5E-44 329.6 25.9 243 171-513 5-260 (285)
2 3go5_A Multidomain protein wit 99.9 5.7E-22 2E-26 200.1 14.4 169 295-504 5-176 (285)
3 1kl9_A Eukaryotic translation 99.7 1.2E-17 4E-22 158.3 9.4 101 373-474 13-116 (182)
4 2khi_A 30S ribosomal protein S 99.7 7.9E-17 2.7E-21 141.6 10.7 92 367-459 20-115 (115)
5 2a19_A EIF-2- alpha, eukaryoti 99.7 4.5E-17 1.5E-21 153.5 9.7 98 374-472 14-114 (175)
6 2eqs_A ATP-dependent RNA helic 99.6 3.7E-16 1.3E-20 134.8 9.3 88 369-457 6-96 (103)
7 2cqo_A Nucleolar protein of 40 99.6 4.1E-16 1.4E-20 138.1 8.5 86 372-457 19-107 (119)
8 2k4k_A GSP13, general stress p 99.6 8.1E-16 2.8E-20 138.1 9.7 81 372-453 4-85 (130)
9 1luz_A Protein K3, protein K2; 99.6 1.2E-15 4E-20 128.3 7.4 77 372-450 8-87 (88)
10 2k52_A Uncharacterized protein 99.6 1.5E-14 5.1E-19 119.0 10.8 73 372-449 2-75 (80)
11 1kl9_A Eukaryotic translation 99.6 4.8E-17 1.6E-21 154.2 -5.6 118 295-416 14-143 (182)
12 1q8k_A Eukaryotic translation 99.5 6.8E-15 2.3E-19 149.7 9.3 92 372-464 10-104 (308)
13 3aev_A Translation initiation 99.5 1.2E-14 4.2E-19 145.8 10.0 97 372-468 8-106 (275)
14 2khj_A 30S ribosomal protein S 99.5 1.4E-14 4.8E-19 125.9 7.9 82 367-449 21-105 (109)
15 3cw2_C Translation initiation 99.5 1.2E-14 4.1E-19 145.3 5.1 102 371-473 7-111 (266)
16 1e3p_A Guanosine pentaphosphat 99.4 5.5E-15 1.9E-19 166.0 -5.5 131 302-459 617-754 (757)
17 4aid_A Polyribonucleotide nucl 99.4 3.4E-14 1.2E-18 158.6 0.0 90 371-461 633-722 (726)
18 3cdi_A Polynucleotide phosphor 99.3 3.2E-13 1.1E-17 151.2 0.0 91 371-462 623-713 (723)
19 2a19_A EIF-2- alpha, eukaryoti 99.3 5.7E-13 2E-17 125.4 0.3 96 295-391 14-120 (175)
20 1wi5_A RRP5 protein homolog; S 99.2 1.4E-11 4.7E-16 108.6 7.4 78 371-448 17-96 (119)
21 1go3_E DNA-directed RNA polyme 99.2 3.4E-11 1.1E-15 113.9 8.3 81 372-454 78-175 (187)
22 2khj_A 30S ribosomal protein S 99.2 2.7E-11 9.2E-16 105.1 7.0 88 278-367 14-103 (109)
23 3psi_A Transcription elongatio 99.1 4.3E-11 1.5E-15 140.0 9.0 77 371-448 898-976 (1219)
24 1q8k_A Eukaryotic translation 99.1 3.6E-12 1.2E-16 129.8 -1.0 99 295-394 12-121 (308)
25 3bzc_A TEX; helix-turn-helix, 99.1 3.7E-11 1.3E-15 135.5 4.5 76 372-448 651-727 (785)
26 2nn6_I 3'-5' exoribonuclease C 99.1 2.2E-10 7.5E-15 110.7 9.0 77 372-448 78-164 (209)
27 4ayb_E DNA-directed RNA polyme 99.1 2E-10 6.8E-15 108.0 8.4 75 372-448 78-168 (180)
28 1luz_A Protein K3, protein K2; 99.1 1.9E-10 6.6E-15 96.4 7.3 70 295-367 10-84 (88)
29 2k4k_A GSP13, general stress p 99.1 8.3E-10 2.8E-14 98.9 11.1 76 293-369 4-81 (130)
30 2cqo_A Nucleolar protein of 40 99.0 1.7E-10 5.9E-15 101.9 6.3 81 286-367 12-97 (119)
31 2khi_A 30S ribosomal protein S 99.0 3.1E-10 1.1E-14 99.4 7.5 82 284-366 18-102 (115)
32 3psf_A Transcription elongatio 99.0 2.2E-11 7.6E-16 140.5 0.0 78 371-449 901-980 (1030)
33 2k52_A Uncharacterized protein 99.0 9.9E-10 3.4E-14 90.0 9.5 69 294-367 3-73 (80)
34 3m7n_A Putative uncharacterize 99.0 5.3E-10 1.8E-14 105.4 8.1 72 372-448 55-135 (179)
35 3aev_A Translation initiation 99.0 6.7E-11 2.3E-15 118.7 1.7 99 295-394 10-119 (275)
36 2z0s_A Probable exosome comple 99.0 6.1E-10 2.1E-14 109.3 7.7 75 372-447 63-141 (235)
37 2b8k_G B16, DNA-directed RNA p 99.0 1E-09 3.5E-14 106.4 9.0 86 372-460 80-179 (215)
38 2eqs_A ATP-dependent RNA helic 98.9 3.1E-09 1E-13 91.4 9.6 72 293-367 9-86 (103)
39 2je6_I RRP4, exosome complex R 98.9 1.3E-09 4.5E-14 108.0 8.0 75 372-447 71-148 (251)
40 2c35_B Human RPB7, DNA-directe 98.9 3.2E-09 1.1E-13 99.1 9.4 71 373-446 79-165 (172)
41 1y14_B B16, RPB7, DNA-directed 98.9 4E-09 1.4E-13 98.5 9.6 72 372-446 80-165 (171)
42 2ba0_A Archeal exosome RNA bin 98.9 6.4E-09 2.2E-13 101.7 9.7 76 372-448 54-130 (229)
43 1hh2_P NUSA, N utilization sub 98.8 9E-10 3.1E-14 113.5 3.4 182 253-444 85-309 (344)
44 3h0g_G DNA-directed RNA polyme 98.8 4.4E-09 1.5E-13 98.4 4.6 71 372-445 81-165 (172)
45 2bh8_A 1B11; transcription, mo 98.7 3.7E-08 1.3E-12 84.5 7.4 83 295-414 12-99 (101)
46 1hh2_P NUSA, N utilization sub 98.7 6.5E-08 2.2E-12 99.6 10.1 96 341-445 88-199 (344)
47 1wi5_A RRP5 protein homolog; S 98.6 1.8E-08 6.3E-13 88.5 4.8 74 293-367 18-95 (119)
48 3cw2_C Translation initiation 98.6 2E-08 6.8E-13 100.3 5.1 72 294-366 9-84 (266)
49 1go3_E DNA-directed RNA polyme 98.6 1.8E-08 6.2E-13 95.1 3.9 73 294-367 79-168 (187)
50 4aid_A Polyribonucleotide nucl 98.5 1.2E-08 4.1E-13 114.1 0.4 99 268-368 605-709 (726)
51 4ayb_E DNA-directed RNA polyme 98.4 7.4E-08 2.5E-12 90.4 3.6 73 294-367 79-167 (180)
52 3cdi_A Polynucleotide phosphor 98.4 2.2E-08 7.6E-13 112.3 0.0 98 268-367 595-698 (723)
53 3psi_A Transcription elongatio 98.4 2.2E-07 7.5E-12 109.1 8.0 74 292-366 898-974 (1219)
54 2nn6_I 3'-5' exoribonuclease C 98.4 4.8E-07 1.6E-11 87.2 7.1 73 294-367 79-163 (209)
55 2id0_A Exoribonuclease 2; RNAs 98.4 8.8E-07 3E-11 98.5 10.0 73 372-444 555-642 (644)
56 3bzc_A TEX; helix-turn-helix, 98.3 2.3E-07 7.7E-12 104.9 4.9 72 294-366 652-725 (785)
57 2ba0_A Archeal exosome RNA bin 98.3 2.2E-06 7.6E-11 83.7 10.3 76 168-280 53-128 (229)
58 3ayh_B DNA-directed RNA polyme 98.3 1.6E-06 5.4E-11 83.2 8.6 61 373-435 79-158 (203)
59 2z0s_A Probable exosome comple 98.3 2E-06 7E-11 84.2 9.5 78 168-279 62-139 (235)
60 2je6_I RRP4, exosome complex R 98.3 1.5E-06 5.1E-11 86.1 8.1 79 167-280 69-147 (251)
61 3psf_A Transcription elongatio 98.2 1.4E-07 4.7E-12 109.2 0.0 75 292-367 901-978 (1030)
62 2bx2_L Ribonuclease E, RNAse E 98.2 3.2E-06 1.1E-10 91.4 9.0 74 372-446 42-127 (517)
63 2asb_A Transcription elongatio 98.2 5.6E-06 1.9E-10 81.6 9.8 76 169-288 4-89 (251)
64 2c35_B Human RPB7, DNA-directe 98.2 2.7E-06 9.4E-11 79.2 7.3 72 295-366 80-165 (172)
65 3m7n_A Putative uncharacterize 98.1 4.8E-06 1.6E-10 78.3 8.5 66 295-367 57-134 (179)
66 1y14_B B16, RPB7, DNA-directed 98.1 4.8E-06 1.6E-10 77.6 8.2 71 295-366 82-165 (171)
67 1e3p_A Guanosine pentaphosphat 98.1 6.6E-08 2.3E-12 108.9 -5.3 98 268-367 633-742 (757)
68 2ckz_B C25, DNA-directed RNA p 98.1 4.6E-06 1.6E-10 80.9 7.9 63 372-435 78-154 (218)
69 2b8k_G B16, DNA-directed RNA p 98.1 4.6E-06 1.6E-10 80.7 7.0 71 295-366 82-165 (215)
70 2vnu_D Exosome complex exonucl 98.1 4.5E-06 1.5E-10 94.4 7.5 69 377-445 671-760 (760)
71 2nn6_H Exosome complex exonucl 98.1 4E-06 1.4E-10 85.3 6.3 74 372-446 92-175 (308)
72 2wp8_J Exosome complex exonucl 98.0 5.3E-06 1.8E-10 96.1 7.1 70 376-445 887-977 (977)
73 3h0g_G DNA-directed RNA polyme 98.0 2.3E-06 7.9E-11 79.9 2.5 73 295-367 83-167 (172)
74 1k0r_A NUSA; two component arr 97.9 2.9E-05 9.9E-10 80.4 9.8 72 169-284 127-208 (366)
75 2ja9_A Exosome complex exonucl 97.9 3.3E-05 1.1E-09 72.4 8.2 72 372-444 4-75 (175)
76 1k0r_A NUSA; two component arr 97.8 2.5E-05 8.4E-10 80.9 7.1 70 372-447 127-203 (366)
77 2ja9_A Exosome complex exonucl 97.7 0.00018 6.2E-09 67.4 10.2 71 168-277 3-74 (175)
78 2asb_A Transcription elongatio 97.6 0.00013 4.6E-09 71.8 7.9 67 295-367 6-82 (251)
79 2nn6_H Exosome complex exonucl 97.4 5.1E-05 1.8E-09 77.1 3.2 85 168-280 91-175 (308)
80 2bh8_A 1B11; transcription, mo 97.4 0.00032 1.1E-08 59.9 7.1 39 294-332 59-99 (101)
81 2id0_A Exoribonuclease 2; RNAs 97.3 0.00068 2.3E-08 75.3 10.3 70 294-364 556-642 (644)
82 2bx2_L Ribonuclease E, RNAse E 97.0 0.0011 3.8E-08 71.6 8.0 70 295-365 44-126 (517)
83 2nn6_G Exosome complex exonucl 97.0 0.0013 4.3E-08 66.3 7.5 71 372-444 124-194 (289)
84 3ayh_B DNA-directed RNA polyme 96.9 0.001 3.6E-08 63.5 6.2 61 295-356 80-160 (203)
85 2nn6_G Exosome complex exonucl 96.8 0.0037 1.3E-07 63.0 9.5 72 168-278 123-194 (289)
86 2ckz_B C25, DNA-directed RNA p 96.6 0.0021 7.2E-08 62.2 6.0 65 295-359 80-159 (218)
87 2vnu_D Exosome complex exonucl 96.6 0.0035 1.2E-07 70.9 8.2 71 295-365 668-760 (760)
88 2wp8_J Exosome complex exonucl 96.3 0.0044 1.5E-07 71.9 6.6 70 295-365 885-977 (977)
89 2r7d_A Ribonuclease II family 91.1 0.38 1.3E-05 51.3 7.6 59 373-444 401-460 (469)
90 3d0f_A Penicillin-binding 1 tr 90.3 0.71 2.4E-05 39.0 7.1 57 373-430 31-93 (106)
91 1jjg_A M156R; beta barrel, S1 87.1 1.5 5.2E-05 36.5 6.6 62 372-435 29-92 (102)
92 2rf4_A DNA-directed RNA polyme 85.2 1.7 5.8E-05 41.5 7.0 62 295-358 128-204 (214)
93 2rf4_A DNA-directed RNA polyme 85.0 2.2 7.5E-05 40.7 7.7 67 372-439 126-204 (214)
94 4b9x_A TDRD1, tudor domain-con 82.3 28 0.00095 32.9 14.4 171 161-397 4-178 (226)
95 1wfq_A UNR protein; beta-barre 81.4 15 0.00052 30.1 10.5 68 373-447 13-83 (89)
96 2k5n_A Putative cold-shock pro 81.3 13 0.00046 29.4 9.8 61 378-447 2-65 (74)
97 3i4o_A Translation initiation 78.9 3.6 0.00012 33.4 5.6 61 377-443 14-77 (79)
98 2kcm_A Cold shock domain famil 71.6 14 0.00048 29.3 7.3 62 380-448 2-67 (74)
99 1c9o_A CSPB, cold-shock protei 70.8 33 0.0011 26.2 9.8 53 379-438 2-57 (66)
100 2yty_A Cold shock domain-conta 70.7 7.8 0.00027 31.8 5.8 53 374-432 14-67 (88)
101 3a0j_A Cold shock protein; OB- 70.1 23 0.00078 27.8 8.3 60 379-445 2-66 (73)
102 1wfq_A UNR protein; beta-barre 70.0 14 0.00049 30.2 7.3 52 296-352 15-68 (89)
103 1h95_A CSD, Y-box binding prot 69.9 21 0.00071 28.5 8.1 61 377-439 7-70 (79)
104 1jjg_A M156R; beta barrel, S1 69.6 19 0.00066 30.0 7.8 58 295-355 31-93 (102)
105 2ytx_A Cold shock domain-conta 69.4 11 0.00039 31.3 6.6 51 376-432 16-67 (97)
106 3cam_A Cold-shock domain famil 68.2 30 0.001 26.6 8.5 60 379-444 2-64 (67)
107 3i2z_B RNA chaperone, negative 68.1 33 0.0011 26.7 8.7 56 378-439 5-63 (71)
108 2yty_A Cold shock domain-conta 65.5 8.1 0.00028 31.7 4.9 51 296-351 15-67 (88)
109 1c9o_A CSPB, cold-shock protei 63.9 21 0.00073 27.3 6.8 48 300-352 2-53 (66)
110 3h8z_A FragIle X mental retard 63.8 18 0.0006 31.9 7.0 59 374-432 13-72 (128)
111 4b9w_A TDRD1, tudor domain-con 63.2 92 0.0032 28.6 16.9 170 161-396 4-177 (201)
112 1g6p_A Cold shock protein TMCS 61.4 16 0.00053 28.1 5.6 53 380-439 2-57 (66)
113 1d7q_A Translation initiation 59.3 31 0.0011 30.9 7.8 66 374-445 28-95 (143)
114 3aqq_A Calcium-regulated heat 58.4 42 0.0014 30.1 8.7 53 374-433 58-113 (147)
115 3i2z_B RNA chaperone, negative 58.1 25 0.00085 27.4 6.3 49 299-352 5-58 (71)
116 2r7d_A Ribonuclease II family 56.3 18 0.00061 38.4 6.8 58 295-363 402-459 (469)
117 3aqq_A Calcium-regulated heat 55.5 29 0.00099 31.2 7.1 51 296-352 59-113 (147)
118 3a0j_A Cold shock protein; OB- 55.4 18 0.00062 28.4 5.1 48 300-352 2-53 (73)
119 1h95_A CSD, Y-box binding prot 55.1 39 0.0013 26.9 7.1 53 298-352 7-65 (79)
120 3ts2_A Protein LIN-28 homolog 55.1 30 0.001 30.9 7.2 51 298-353 8-70 (148)
121 3cam_A Cold-shock domain famil 54.9 29 0.001 26.7 6.2 48 300-352 2-54 (67)
122 3d0f_A Penicillin-binding 1 tr 53.6 37 0.0013 28.2 7.1 57 292-349 29-93 (106)
123 3ulj_A LIN28B, DNA-binding pro 53.0 43 0.0015 27.5 7.2 50 298-352 7-68 (90)
124 3h8z_A FragIle X mental retard 50.9 31 0.0011 30.3 6.4 83 296-396 14-99 (128)
125 1cuk_A RUVA protein; DNA repai 48.5 44 0.0015 31.4 7.5 50 378-435 4-53 (203)
126 1yez_A MM1357; MAR30, autostru 46.5 78 0.0027 24.0 7.4 46 295-354 12-58 (68)
127 3ts2_A Protein LIN-28 homolog 46.3 1.2E+02 0.0042 26.8 9.7 65 377-447 8-82 (148)
128 1g6p_A Cold shock protein TMCS 44.7 14 0.00048 28.4 2.8 47 301-352 2-52 (66)
129 1yvc_A MRR5; structure, autost 41.6 87 0.003 24.0 7.0 46 295-354 14-60 (70)
130 2kcm_A Cold shock domain famil 40.1 32 0.0011 27.2 4.3 46 301-351 2-52 (74)
131 2k5n_A Putative cold-shock pro 39.9 76 0.0026 24.9 6.5 47 299-352 2-52 (74)
132 2lj0_A Sorbin and SH3 domain-c 39.2 39 0.0013 25.7 4.6 37 169-207 24-62 (65)
133 2ytx_A Cold shock domain-conta 38.2 27 0.00093 29.0 3.8 51 296-351 15-67 (97)
134 2dgy_A MGC11102 protein; EIF-1 37.4 99 0.0034 26.4 7.3 63 377-445 15-80 (111)
135 1fr3_A MOP, molybdate/tungstat 35.9 70 0.0024 23.3 5.6 48 377-432 7-59 (67)
136 1x65_A UNR protein; cell-free 34.7 18 0.0006 29.8 2.0 49 377-432 7-56 (89)
137 2eqj_A Metal-response element- 34.3 1.6E+02 0.0056 22.9 8.5 48 252-328 11-61 (66)
138 1cuk_A RUVA protein; DNA repai 33.3 1.8E+02 0.006 27.2 9.0 27 175-201 4-31 (203)
139 1gut_A Mopii, molybdate bindin 32.3 84 0.0029 23.2 5.5 49 377-432 7-60 (68)
140 3ulj_A LIN28B, DNA-binding pro 30.6 2.2E+02 0.0075 23.2 9.5 62 378-445 8-79 (90)
141 3i4o_A Translation initiation 30.1 71 0.0024 25.6 4.9 61 297-363 13-77 (79)
142 2g6f_X RHO guanine nucleotide 28.4 87 0.003 22.5 4.8 34 169-205 22-56 (59)
143 2ph7_A Uncharacterized protein 28.3 8.9 0.0003 36.8 -0.9 50 19-72 65-121 (246)
144 2bzy_A CRK-like protein, CRKL 28.0 84 0.0029 23.3 4.8 37 169-207 21-57 (67)
145 2lss_A Cold shock-like protein 33.6 13 0.00044 29.0 0.0 50 299-352 4-57 (70)
146 4e6r_A Cytoplasmic protein NCK 26.9 97 0.0033 21.9 4.8 37 168-206 18-54 (58)
147 2bz8_A SH3-domain kinase bindi 26.9 77 0.0026 22.7 4.3 35 169-206 19-54 (58)
148 2eyx_A V-CRK sarcoma virus CT1 26.0 1E+02 0.0035 22.9 5.0 37 169-207 26-62 (67)
149 1zuy_A Myosin-5 isoform; SH3 d 26.0 94 0.0032 22.0 4.6 36 169-206 19-56 (58)
150 1uti_A GRB2-related adaptor pr 25.9 84 0.0029 22.4 4.3 35 169-206 19-54 (58)
151 1sem_A SEM-5; SRC-homology 3 ( 25.7 85 0.0029 22.3 4.3 35 169-206 20-55 (58)
152 2ytv_A Cold shock domain-conta 25.5 27 0.00093 27.9 1.6 49 298-352 7-58 (79)
153 1jo8_A ABP1P, actin binding pr 25.2 84 0.0029 22.5 4.2 36 169-206 18-55 (58)
154 2fpf_A C-JUN-amino-terminal ki 25.2 1.2E+02 0.004 22.7 5.2 37 169-207 24-62 (71)
155 1w70_A Neutrophil cytosol fact 25.2 1.1E+02 0.0036 22.1 4.8 34 169-205 22-56 (60)
156 4hcz_A PHD finger protein 1; p 25.1 2.2E+02 0.0076 21.5 6.4 48 252-328 1-51 (58)
157 2xmf_A Myosin 1E SH3; motor pr 24.8 1.1E+02 0.0037 22.0 4.8 34 169-205 23-57 (60)
158 1zx6_A YPR154WP; SH3 domain, p 24.0 1.2E+02 0.004 21.7 4.8 35 169-206 20-55 (58)
159 2fpe_A C-JUN-amino-terminal ki 23.9 1.3E+02 0.0043 21.8 5.0 36 169-206 21-58 (62)
160 1zlm_A Osteoclast stimulating 23.4 97 0.0033 22.1 4.2 35 169-206 21-56 (58)
161 1uj0_A Signal transducing adap 23.2 1E+02 0.0035 22.4 4.4 35 169-206 23-58 (62)
162 2gnc_A SLIT-ROBO RHO GTPase-ac 23.1 1.1E+02 0.0037 22.0 4.5 34 169-205 24-58 (60)
163 2drm_A Acanthamoeba myosin IB; 22.9 1.1E+02 0.0037 21.8 4.4 34 169-205 21-55 (58)
164 2ew3_A SH3-containing GRB2-lik 22.9 1.2E+02 0.0039 22.8 4.7 35 169-206 21-56 (68)
165 1k4u_S Phagocyte NADPH oxidase 22.7 1.1E+02 0.0037 22.2 4.4 35 169-206 23-58 (62)
166 1ixr_A Holliday junction DNA h 22.7 62 0.0021 30.1 3.7 54 378-440 4-59 (191)
167 2ak5_A RHO guanine nucleotide 22.4 1.1E+02 0.0037 22.3 4.4 35 169-206 24-59 (64)
168 1jt8_A EIF-1A, probable transl 22.4 57 0.002 27.5 3.1 54 376-435 19-73 (102)
169 1cka_A C-CRK N-terminal SH3 do 22.2 1.2E+02 0.004 21.5 4.5 35 169-205 19-54 (57)
170 2j6f_A CD2-associated protein; 22.1 1.2E+02 0.0042 21.9 4.6 36 169-207 19-56 (62)
171 2j05_A RAS GTPase-activating p 22.0 1.4E+02 0.0048 21.8 5.0 36 169-206 24-61 (65)
172 2ztd_A Holliday junction ATP-d 21.6 2.1E+02 0.0071 27.0 7.2 50 378-438 20-72 (212)
173 3u23_A CD2-associated protein; 21.6 1.2E+02 0.0041 21.9 4.5 35 169-206 25-60 (65)
174 4glm_A Dynamin-binding protein 21.1 1.3E+02 0.0044 22.3 4.7 37 168-206 30-66 (72)
175 1gcq_C VAV proto-oncogene; SH3 21.0 1E+02 0.0036 22.8 4.1 36 169-206 28-66 (70)
176 2vwf_A Growth factor receptor- 21.0 1.2E+02 0.0042 21.4 4.4 35 169-206 20-55 (58)
177 2dl4_A Protein STAC; SH3 domai 20.8 1.4E+02 0.0047 22.1 4.8 36 169-206 25-60 (68)
178 2lx7_A GAS-7, growth arrest-sp 20.8 49 0.0017 24.8 2.1 35 169-205 22-57 (60)
179 2k2m_A EPS8-like protein 1; al 20.7 1.1E+02 0.0039 22.7 4.3 36 169-206 26-61 (68)
180 3ulr_B SRC substrate cortactin 20.7 1.2E+02 0.0041 22.0 4.4 35 169-205 27-61 (65)
181 1ruw_A Myosin-3 isoform, MYO3; 20.7 1.3E+02 0.0045 22.2 4.7 37 169-207 21-59 (69)
182 1b07_A Protein (proto-oncogene 20.4 1.3E+02 0.0044 22.3 4.5 37 169-207 21-58 (65)
183 1tuc_A Alpha-spectrin; capping 20.4 1.2E+02 0.0043 22.1 4.4 36 169-207 7-43 (63)
184 4f14_A Nebulette; SH3 domain, 20.2 1.5E+02 0.0052 21.2 4.8 36 169-206 24-61 (64)
185 2djq_A SH3 domain containing r 20.1 1.4E+02 0.0046 22.1 4.6 35 169-206 25-60 (68)
186 2oqk_A Putative translation in 20.1 1.3E+02 0.0046 25.6 5.0 53 373-432 29-82 (117)
187 2ytv_A Cold shock domain-conta 20.0 59 0.002 25.9 2.6 55 377-439 7-64 (79)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=1e-39 Score=329.65 Aligned_cols=243 Identities=14% Similarity=0.064 Sum_probs=212.1
Q ss_pred CCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCCCCC
Q 010232 171 KPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGGSGP 250 (514)
Q Consensus 171 k~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~~~~ 250 (514)
.+|++++|+|+++++.|+||+++ +.+|+||.+|+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~-------------------------------------------- 39 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQ-------------------------------------------- 39 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCC--------------------------------------------
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCc--------------------------------------------
Confidence 47999999999999999999997 789999998872
Q ss_pred CCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhhHHHhhhcCCCEEEEEEEEEE-CCeEEEEECC--EEEEEeccc
Q 010232 251 GRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWN-TGGLLTRIEG--LRAFLPKAE 327 (514)
Q Consensus 251 ~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~~~~~~w~~l~~~~k~GeiV~GkV~~v~-~~G~fVdi~G--i~gFVP~se 327 (514)
. ++||+|+|+|| .|.++|+++|++.+. ++.|+++.|+|++++ ++|+||+|++ .+||||+++
T Consensus 40 --~--~vGdevev~v~-~d~~~r~iat~~~p~-----------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~se 103 (285)
T 3go5_A 40 --H--TVGDTVKGFAY-TDMKQKLRLTTLEVT-----------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDI 103 (285)
T ss_dssp --C--CTTSEEEEEEE-ECTTSCEEEECSCCC-----------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGG
T ss_pred --c--ccCCEEEEEEE-ECCCCCEEEeccccc-----------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHH
Confidence 1 68999999999 688999999987652 469999999999999 7999999974 799999999
Q ss_pred c-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh-----hhhh--ccCCCCceEEEEEEEEecceEEE-EECCC
Q 010232 328 L-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE-----AWAT--LNLREGTLLEGTVKKIYPYGAQI-RIGDS 398 (514)
Q Consensus 328 l-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~-----~~~~--~~l~~G~iV~G~V~~I~~~GaFV-~I~~~ 398 (514)
+ +.+.. ..++|+++.++ +.+|+ ++||.+|+|. +|.. ..+++|++|+|+|++++++|+|| .+++
T Consensus 104 l~~~~~~-----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~- 175 (285)
T 3go5_A 104 LPELKEL-----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN- 175 (285)
T ss_dssp SCSSGGG-----SCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTT-
T ss_pred CCccccc-----ccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC-
Confidence 9 43221 23699999777 57998 7899999862 4643 47999999999999999999999 9988
Q ss_pred ceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeC-CCeEEEEEecCcCCCCccccchhhhhhHHHHHHHHHHhhCc
Q 010232 399 NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF-PDKISLSIADLESEPGLFVSDKERVFSEAEEMAKKYRQKLP 477 (514)
Q Consensus 399 gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde-~~rI~LSlK~l~~~P~~~~~~k~~v~~~ae~~a~~~~~kl~ 477 (514)
++.||||+||++ +.+++||+|+|+|+++++ ++||+||+|++...++ ++.|+.+.+.|.
T Consensus 176 g~~Glih~SEl~--------~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~-------------~~~a~~il~~L~ 234 (285)
T 3go5_A 176 NMLGFIHPSERY--------AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEML-------------ENDAQMILTYLE 234 (285)
T ss_dssp TEEEEECGGGCS--------SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCC-------------CHHHHHHHHHHH
T ss_pred CeEEEEEHHHcc--------ccCCCCCEEEEEEEEEECCCCeEEEEeChhhhhcc-------------chHHHHHHHHHH
Confidence 899999999998 469999999999999994 9999999988776554 456788899998
Q ss_pred cCCCCCcccCCCCCCCCCCCccchhhccceeeeecC
Q 010232 478 AVSVSPKSESLPTDTPPFDSEASMCANWKWFRFEQD 513 (514)
Q Consensus 478 ~~~~g~~~e~~v~~~~pfg~~~~~~~~~~~~~~~~~ 513 (514)
+.+ |++||+|+|+|++|++.|+|||.
T Consensus 235 ~~~----------G~l~~~DkS~pe~I~~~f~~SK~ 260 (285)
T 3go5_A 235 SNG----------GFMTLNDKSSPDDIKATFGISKG 260 (285)
T ss_dssp HTT----------TEESCCTTSCHHHHHHHHSSCHH
T ss_pred hcC----------CeeccCCCCCHHHHHHHhCcCHH
Confidence 888 99999999999999999999985
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.87 E-value=5.7e-22 Score=200.11 Aligned_cols=169 Identities=12% Similarity=0.006 Sum_probs=143.0
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhhhccCC
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLR 374 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~~~~l~ 374 (514)
..|++++|+|++++++|+||+++|.+||||.+++.. ++|+++.|.|+ .| ..+|+++|++.+| ++
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~g~egllp~se~~~----------~vGdevev~v~-~d-~~~r~iat~~~p~----~~ 68 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQH----------TVGDTVKGFAY-TD-MKQKLRLTTLEVT----AT 68 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGCCC----------CTTSEEEEEEE-EC-TTSCEEEECSCCC----SC
T ss_pred cCCCEEEEEEEEEECCEEEEEcCCeEEEEEHHHCcc----------ccCCEEEEEEE-EC-CCCCEEEeccccc----cc
Confidence 379999999999999999999999999999999942 39999999998 45 4668899988774 79
Q ss_pred CCceEEEEEEEEe-cceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC-cCCCC
Q 010232 375 EGTLLEGTVKKIY-PYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL-ESEPG 452 (514)
Q Consensus 375 ~G~iV~G~V~~I~-~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l-~~~P~ 452 (514)
+|+++.|+|++++ ++||||+++..+++||||.|+++|.+. ..+++||+|.|+ +.+|.++||.||+|+. ..+||
T Consensus 69 ~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~----~~~~~Gd~v~v~-l~iD~~~Ri~ls~k~~~~~~~~ 143 (285)
T 3go5_A 69 QDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE----LWPKKGDQLYIR-LEVDKKDRIWGLLAYQEDFQRL 143 (285)
T ss_dssp SSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG----GSCCTTCEEEEE-EEECTTSCEEEEECCHHHHHHH
T ss_pred CCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc----cccCCCCEEEEE-EEECCCCcEEEEehhhhhcchh
Confidence 9999999999999 799999997313899999999998654 346899999776 4788778999999876 35666
Q ss_pred ccccchhhhhhHHHHHHHHHHhhCccCCCCCcccCCCCCCCCCCCcc-chhhc
Q 010232 453 LFVSDKERVFSEAEEMAKKYRQKLPAVSVSPKSESLPTDTPPFDSEA-SMCAN 504 (514)
Q Consensus 453 ~~~~~k~~v~~~ae~~a~~~~~kl~~~~~g~~~e~~v~~~~pfg~~~-~~~~~ 504 (514)
.... ....+|+.++|+|.++.|||+|+ .++..
T Consensus 144 ~~~~--------------------~~~~~G~~V~g~V~~i~~~G~fV~~i~~g 176 (285)
T 3go5_A 144 ARPA--------------------YNNMQNQNWPAIVYRLKLSGTFVYLPENN 176 (285)
T ss_dssp CCCC--------------------CSCCTTCEEEEEEEEEETTEEEEEETTTT
T ss_pred hhhh--------------------hhCCCCCEEEEEEEEEeCCcEEEEEeCCC
Confidence 5433 34567999999999999999999 88654
No 3
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.71 E-value=1.2e-17 Score=158.34 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=80.1
Q ss_pred CCCCceEEEEEEEEecceEEEEE--CCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCcC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRI--GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLES 449 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I--~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~~ 449 (514)
+++|+++.|+|++|++||+||+| .+ |++||||+|+|+|.++.++++.+++||.|+|+|+++| +++||+||+|++.+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~-g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~ 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYN-NIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTT-TEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCC-CcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 48999999999999999999999 45 7999999999999999999999999999999999998 78999999999999
Q ss_pred CCCccccchhhhhhHHHHHHHHHHh
Q 010232 450 EPGLFVSDKERVFSEAEEMAKKYRQ 474 (514)
Q Consensus 450 ~P~~~~~~k~~v~~~ae~~a~~~~~ 474 (514)
+||..+.++++.++.+......+.+
T Consensus 92 ~p~~~~~~~~~~g~~v~g~v~~i~~ 116 (182)
T 1kl9_A 92 EEAIKCEDKFTKSKTVYSILRHVAE 116 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhccCCCEEEEEEEEchh
Confidence 9999999999887776655554444
No 4
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.69 E-value=7.9e-17 Score=141.61 Aligned_cols=92 Identities=28% Similarity=0.470 Sum_probs=83.4
Q ss_pred hhhh--ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccc-cccCcccccCCCCEEEEEEEEEe-CCCeEEE
Q 010232 367 AWAT--LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKSM-FPDKISL 442 (514)
Q Consensus 367 ~~~~--~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~-~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~L 442 (514)
+|.. ..+++|+++.|+|++|++||+||+|++ +++||||+|++++. ++.++.+.|++||.|+|+|++++ +++||.|
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~l 98 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISL 98 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECST-TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEE
Confidence 4543 378999999999999999999999998 89999999999984 78899999999999999999998 6899999
Q ss_pred EEecCcCCCCccccchh
Q 010232 443 SIADLESEPGLFVSDKE 459 (514)
Q Consensus 443 SlK~l~~~P~~~~~~k~ 459 (514)
|+|++.++||+.+.+++
T Consensus 99 slk~~~~~p~~~~~~~~ 115 (115)
T 2khi_A 99 GLKQCKANPWQQFAETH 115 (115)
T ss_dssp CCCCCCSSCCCCCCCCC
T ss_pred EEEecCcCHHHHHHhhC
Confidence 99999999999987653
No 5
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.69 E-value=4.5e-17 Score=153.49 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=81.4
Q ss_pred CCCceEEEEEEEEecceEEEEEC--CCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCcCC
Q 010232 374 REGTLLEGTVKKIYPYGAQIRIG--DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESE 450 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~~GaFV~I~--~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~~~ 450 (514)
++|+++.|+|++|++||+||+|. + |++||||+|+|+|.++.++++.+++||.|+|+|+++| +++||.||+|++.++
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~-gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYD-NIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTT-TCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCC-CcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 59999999999999999999994 5 7999999999999999999999999999999999998 789999999999999
Q ss_pred CCccccchhhhhhHHHHHHHHH
Q 010232 451 PGLFVSDKERVFSEAEEMAKKY 472 (514)
Q Consensus 451 P~~~~~~k~~v~~~ae~~a~~~ 472 (514)
||..+.++++.++.+......+
T Consensus 93 ~~~~~~~~~~~g~~v~g~V~~i 114 (175)
T 2a19_A 93 DIIKCEEKYQKSKTVHSILRYC 114 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccCCCcceEEEEEc
Confidence 9999999998877665544333
No 6
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=134.83 Aligned_cols=88 Identities=31% Similarity=0.483 Sum_probs=79.6
Q ss_pred hhccCCCCceEEEEEEEEecceEEEEECCC--ceEEEEEeecc-ccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEe
Q 010232 369 ATLNLREGTLLEGTVKKIYPYGAQIRIGDS--NRSGLLHISNM-SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445 (514)
Q Consensus 369 ~~~~l~~G~iV~G~V~~I~~~GaFV~I~~~--gi~GLvh~Sel-s~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK 445 (514)
....+++|+++.|+|++|++||+||+|++. +++||||+|++ ++.++.++.+.|++||.|+|+|++++. +||.||+|
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~-~~i~LSlk 84 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG-TKTSLSMK 84 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET-TEEEEEST
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC-CeeEEEEe
Confidence 345789999999999999999999999852 69999999999 677889999999999999999999986 69999999
Q ss_pred cCcCCCCccccc
Q 010232 446 DLESEPGLFVSD 457 (514)
Q Consensus 446 ~l~~~P~~~~~~ 457 (514)
++.++||..+..
T Consensus 85 ~~~~~~~~~~~~ 96 (103)
T 2eqs_A 85 DVDQETGEDLNP 96 (103)
T ss_dssp TBCTTTCCBCCS
T ss_pred ecccCCchhcCc
Confidence 999999998754
No 7
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=138.12 Aligned_cols=86 Identities=28% Similarity=0.376 Sum_probs=78.8
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CC--CeEEEEEecCc
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FP--DKISLSIADLE 448 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~--~rI~LSlK~l~ 448 (514)
.+++|+++.|+|++|++||+||+|.+.+++||||+|++++.++.++.+.|++||.|+|+|++++ ++ +||.||+|++.
T Consensus 19 ~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~~~ 98 (119)
T 2cqo_A 19 LPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVN 98 (119)
T ss_dssp SCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTTBC
T ss_pred ccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEeecc
Confidence 6899999999999999999999996523699999999999999999999999999999999998 33 69999999999
Q ss_pred CCCCccccc
Q 010232 449 SEPGLFVSD 457 (514)
Q Consensus 449 ~~P~~~~~~ 457 (514)
++||+.+..
T Consensus 99 ~~~~~~~~~ 107 (119)
T 2cqo_A 99 QGTGKDLDP 107 (119)
T ss_dssp SSSCCBSCT
T ss_pred cCCccccCc
Confidence 999998753
No 8
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.62 E-value=8.1e-16 Score=138.12 Aligned_cols=81 Identities=30% Similarity=0.489 Sum_probs=77.8
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCcCC
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLESE 450 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~~~ 450 (514)
.+++|++|.|+|++|++||+||+|++ ++.||||+|++++.++.++.+.|++||.|+|+|++++ ++++|.||+|++.++
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 68999999999999999999999988 8999999999999999999999999999999999998 589999999999999
Q ss_pred CCc
Q 010232 451 PGL 453 (514)
Q Consensus 451 P~~ 453 (514)
|+.
T Consensus 83 p~~ 85 (130)
T 2k4k_A 83 PEK 85 (130)
T ss_dssp CCC
T ss_pred ccc
Confidence 986
No 9
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.60 E-value=1.2e-15 Score=128.29 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=71.3
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCC-ceEEEEEee-ccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHIS-NMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh~S-els~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
..++|+++.|+|+ |++||+||+|.+. +++||+|+| +++++++.++++.+ +||+|+|+|+++| +++||.||+|++.
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~ 85 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 5689999999999 9999999999742 699999999 99999999999999 9999999999998 6899999999987
Q ss_pred CC
Q 010232 449 SE 450 (514)
Q Consensus 449 ~~ 450 (514)
++
T Consensus 86 ~~ 87 (88)
T 1luz_A 86 RH 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 10
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.56 E-value=1.5e-14 Score=118.96 Aligned_cols=73 Identities=27% Similarity=0.456 Sum_probs=67.1
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCcC
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLES 449 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~~ 449 (514)
++++|+++.|+|+++++||+||+|++ +++||+|+|++++.++ +.|++||.|+|+|++++ +++||.||+|++.+
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 47899999999999999999999998 8999999999998776 78999999999999998 56999999998875
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.55 E-value=4.8e-17 Score=154.15 Aligned_cols=118 Identities=12% Similarity=0.227 Sum_probs=96.7
Q ss_pred cCCCEEEEEEEEEECCeEEEEE---CCEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh----
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi---~Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~---- 366 (514)
+.|+++.|+|+++.++|+||++ +|++||||.|+| +.++.++.+.. .+||.|.|+|+++|+++++|.||+|.
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~-~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLI-RIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhc-CCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 6899999999999999999999 679999999999 67888887765 89999999999999999999999995
Q ss_pred hhhh--ccCCCCceEEEEEEEEec-ceEEEEECCCceEEEEEeeccccc-cccC
Q 010232 367 AWAT--LNLREGTLLEGTVKKIYP-YGAQIRIGDSNRSGLLHISNMSRT-RVTS 416 (514)
Q Consensus 367 ~~~~--~~l~~G~iV~G~V~~I~~-~GaFV~I~~~gi~GLvh~Sels~~-~v~~ 416 (514)
+|.. ..+..|+.+.|+|+++++ || |.|.+ |++||+|+|+++|. ++.+
T Consensus 93 p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~~~~~~ 143 (182)
T 1kl9_A 93 EAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFDDKYKR 143 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHHHHHTC
T ss_pred hHHHHHHhccCCCEEEEEEEEchhhcC--CcccC-ChhheEEeeecchhhhcCC
Confidence 4643 378999999999999998 99 78888 89999999998875 3455
No 12
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.55 E-value=6.8e-15 Score=149.74 Aligned_cols=92 Identities=24% Similarity=0.287 Sum_probs=84.5
Q ss_pred cCCCCceEEEEEEEEecceEEEEEC--CCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIG--DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~--~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
.+++|+++.|+|++|++||+||+|+ + +++||||+|+++|.++.++.+.|++||.|+|+|+++| +++||.||+|++.
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~-gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYN-NIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTT-SCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCC-CeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 4679999999999999999999997 5 7999999999999999999999999999999999998 6899999999999
Q ss_pred CCCCccccchhhhhhH
Q 010232 449 SEPGLFVSDKERVFSE 464 (514)
Q Consensus 449 ~~P~~~~~~k~~v~~~ 464 (514)
++||..+.++++.++.
T Consensus 89 ~~p~~~~~~~~~~G~~ 104 (308)
T 1q8k_A 89 PEEAIKCEDKFTKSKT 104 (308)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHccCCCe
Confidence 9999887777666544
No 13
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.54 E-value=1.2e-14 Score=145.83 Aligned_cols=97 Identities=26% Similarity=0.406 Sum_probs=86.3
Q ss_pred cCCCCceEEEEEEEEecceEEEEECC-CceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCcC
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLES 449 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~-~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~~ 449 (514)
..++|++|.|+|++|++||+||+|++ .|++||||+|+++++++.++.+.+++||.|.|+|+++| ++++|.||+|++.+
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 35699999999999999999999983 17999999999999999999999999999999999999 68999999999999
Q ss_pred CCCccccchhhhhhHHHHH
Q 010232 450 EPGLFVSDKERVFSEAEEM 468 (514)
Q Consensus 450 ~P~~~~~~k~~v~~~ae~~ 468 (514)
+||....+++..++.+...
T Consensus 88 ~~~~~~~~~~~~g~~v~g~ 106 (275)
T 3aev_A 88 QQRKAKLQEFKRAQKAENL 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhccCCCeEEEE
Confidence 9998877777665554333
No 14
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.52 E-value=1.4e-14 Score=125.92 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=75.5
Q ss_pred hhhh--ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEE
Q 010232 367 AWAT--LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLS 443 (514)
Q Consensus 367 ~~~~--~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LS 443 (514)
+|+. ..+++|++|.|+|++|+++|+||+|++ +++||||++++++.++.++.+.|++||.|+|+|++++ +.+||.||
T Consensus 21 p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS 99 (109)
T 2khj_A 21 MFNNWVALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLS 99 (109)
T ss_dssp CHHHHTTTCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred HHHHHhhcCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 5654 379999999999999999999999998 8999999999999999999999999999999999998 56799999
Q ss_pred EecCcC
Q 010232 444 IADLES 449 (514)
Q Consensus 444 lK~l~~ 449 (514)
+|++.+
T Consensus 100 ~k~~~~ 105 (109)
T 2khj_A 100 VRAKDE 105 (109)
T ss_dssp TTSSSS
T ss_pred EeecCh
Confidence 998764
No 15
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.49 E-value=1.2e-14 Score=145.34 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=90.2
Q ss_pred ccCCCCceEEEEEEEEecceEEEEEC--CCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecC
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIG--DSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADL 447 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~--~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l 447 (514)
..+++|+++.|+|++|++||+||+|+ + ++.||||+|+++++++.++.+.+++||.|.|+|++++ ++++|.||+|++
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~-~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYG-GLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTT-SEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCC-CeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 35789999999999999999999997 5 7999999999999999999999999999999999998 589999999999
Q ss_pred cCCCCccccchhhhhhHHHHHHHHHH
Q 010232 448 ESEPGLFVSDKERVFSEAEEMAKKYR 473 (514)
Q Consensus 448 ~~~P~~~~~~k~~v~~~ae~~a~~~~ 473 (514)
.++||..+.+++...+.+......+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 86 TDDERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhccccCccceeeeehh
Confidence 99999998888877665444443333
No 16
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.39 E-value=5.5e-15 Score=165.99 Aligned_cols=131 Identities=21% Similarity=0.231 Sum_probs=50.5
Q ss_pred EEEEE--EECCeEEEEECCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhhhccCCCCce
Q 010232 302 VKFTE--WNTGGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTL 378 (514)
Q Consensus 302 GkV~~--v~~~G~fVdi~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~~~~l~~G~i 378 (514)
|++++ ..+.|++|++++ +|.++++... ...+...+ .+.. + . .+ ..+++|++
T Consensus 617 Gk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~~~~a~~-------~i~~-----------i--~--~p---~~~~vG~i 670 (757)
T 1e3p_A 617 RQMINQIQEDTGAEITIED-DGTIYIGAADGPAAEAARA-------TING-----------I--A--NP---TSPEVGER 670 (757)
T ss_dssp ----CTTCCCCCSCC---------CCCBSSHHHHCC--------------------------------------------
T ss_pred ceeeehhhHhhCCEEEecC-CceEEEecCCHHHHHHHHH-------HHHH-----------h--c--ch---hhcccccE
Confidence 45555 456899999975 8999988873 22221100 0000 0 0 01 35899999
Q ss_pred EEEEEEEEecceEEEEECCCceEEEEEeecc----ccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCcCCCCcc
Q 010232 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNM----SRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEPGLF 454 (514)
Q Consensus 379 V~G~V~~I~~~GaFV~I~~~gi~GLvh~Sel----s~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l~~~P~~~ 454 (514)
+.|+|++|++||+||+|.+ |++||||+|+| +|+|+.++.+.|++||+|+|+|+++|.++||.||+|++.++||..
T Consensus 671 ~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~pw~~ 749 (757)
T 1e3p_A 671 ILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSLIPVIEGEEAASD 749 (757)
T ss_dssp --CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSCC---------------
T ss_pred EEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCCEEEEEecCCCCchhh
Confidence 9999999999999999988 89999999999 999999999999999999999999988899999999999999998
Q ss_pred ccchh
Q 010232 455 VSDKE 459 (514)
Q Consensus 455 ~~~k~ 459 (514)
...++
T Consensus 750 ~~~~~ 754 (757)
T 1e3p_A 750 EKKDD 754 (757)
T ss_dssp -----
T ss_pred hhhcc
Confidence 76655
No 17
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.38 E-value=3.4e-14 Score=158.62 Aligned_cols=90 Identities=32% Similarity=0.441 Sum_probs=0.0
Q ss_pred ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCcCC
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESE 450 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l~~~ 450 (514)
..+++|++|.|+|++|++||+||+|.+ |++||||+|+++|+|+.++.+.|++||.|+|+|+++|.++||.||+|++.++
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCcEEEEEeecccC
Confidence 378999999999999999999999998 8999999999999999999999999999999999998889999999999999
Q ss_pred CCccccchhhh
Q 010232 451 PGLFVSDKERV 461 (514)
Q Consensus 451 P~~~~~~k~~v 461 (514)
||..+.++..+
T Consensus 712 ~G~~~~~k~~~ 722 (726)
T 4aid_A 712 TGEDLSKKEAA 722 (726)
T ss_dssp -----------
T ss_pred cchhhhhhhhh
Confidence 99999877654
No 18
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.28 E-value=3.2e-13 Score=151.20 Aligned_cols=91 Identities=29% Similarity=0.463 Sum_probs=0.0
Q ss_pred ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCcCC
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESE 450 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l~~~ 450 (514)
..+++|+++.|+|++|++||+||+|.+ |++||||+|+++|+|+.++.+.|++||.|+|+|+++|.++||.||+|++.++
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCcEEEEEEeccCC
Confidence 368999999999999999999999988 8999999999999999999999999999999999998889999999999999
Q ss_pred CCccccchhhhh
Q 010232 451 PGLFVSDKERVF 462 (514)
Q Consensus 451 P~~~~~~k~~v~ 462 (514)
||..+......+
T Consensus 702 ~g~~~~p~~~~~ 713 (723)
T 3cdi_A 702 SQPAAAPEAPAA 713 (723)
T ss_dssp ------------
T ss_pred CCcccCccccch
Confidence 999876555443
No 19
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.26 E-value=5.7e-13 Score=125.43 Aligned_cols=96 Identities=13% Similarity=0.284 Sum_probs=80.1
Q ss_pred cCCCEEEEEEEEEECCeEEEEE---CCEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh----
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi---~Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~---- 366 (514)
+.|+++.|+|+++.++|+||++ +|++||||.|+| +.++.++.+.. .+||.|.|+|+++|+++++|.||+|.
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~-~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLI-RVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCC-CTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcC-CCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 4899999999999999999999 689999999999 67777777764 89999999999999999999999995
Q ss_pred hhhh--ccCCCCceEEEEEEEEe-cceE
Q 010232 367 AWAT--LNLREGTLLEGTVKKIY-PYGA 391 (514)
Q Consensus 367 ~~~~--~~l~~G~iV~G~V~~I~-~~Ga 391 (514)
+|.. ..+..|+.+.|+|++++ ++|+
T Consensus 93 ~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 93 DIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 4553 37899999999999998 7887
No 20
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.22 E-value=1.4e-11 Score=108.62 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=64.6
Q ss_pred ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeecc-ccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNM-SRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sel-s~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
.++++|+++.|+|++|++||+||+|+..++.||+|.++. +|.++.++.+.|++||.|+|+|++++ +++||.||+|+..
T Consensus 17 ~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 17 EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 478999999999999999999999983156666555553 24456688999999999999999998 6789999998654
No 21
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.18 E-value=3.4e-11 Score=113.92 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=70.6
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeecccccccc-----------CcccccCCCCEEEEEEEEEe-CC--
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT-----------SVSDLLNEGERVKVLVVKSM-FP-- 437 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~-----------~~~~~~kvGd~VkvkVi~vd-e~-- 437 (514)
..++|+++.|+|++++++|+||+|++ ++||+|+|++++.++. ++.+.|++||.|+|+|++++ ++
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~--~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP--LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS--SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC--ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 46899999999999999999999974 8999999999988875 78899999999999999998 43
Q ss_pred ---CeEEEEEecCcCCCCcc
Q 010232 438 ---DKISLSIADLESEPGLF 454 (514)
Q Consensus 438 ---~rI~LSlK~l~~~P~~~ 454 (514)
+||.||+|+...-|+..
T Consensus 156 p~~~~I~lS~k~~~LG~~~w 175 (187)
T 1go3_E 156 KRGSKIALTMRQPYLGKLEW 175 (187)
T ss_dssp ---CEEEEECCSTTCEEHHH
T ss_pred CCccEEEEEEcCCCCCcHHH
Confidence 49999999865544433
No 22
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.18 E-value=2.7e-11 Score=105.11 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=73.2
Q ss_pred ehHHHHHhhhhHHHhhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeC
Q 010232 278 TRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINE 355 (514)
Q Consensus 278 ~kk~~~~~~w~~l~~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~ 355 (514)
.|+. ....|+.+...++.|+++.|+|+++.++|+||+++ |++||||.+++ +.++.++.+.. .+||.|.|+|+++|+
T Consensus 14 iKq~-~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~-~vGd~V~v~V~~vd~ 91 (109)
T 2khj_A 14 LVPR-GSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVL-SVGDEVEAKFTGVDR 91 (109)
T ss_dssp --------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSC-CTTCEEEEEEEEEET
T ss_pred hhhc-ccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhcc-CCCCEEEEEEEEEEC
Confidence 3443 35689999888999999999999999999999997 79999999999 56666666653 799999999999999
Q ss_pred CCCceEeehhhh
Q 010232 356 DTNDLILSEREA 367 (514)
Q Consensus 356 e~~rIiLS~K~~ 367 (514)
++++|.||+|..
T Consensus 92 ~~~ki~LS~k~~ 103 (109)
T 2khj_A 92 KNRAISLSVRAK 103 (109)
T ss_dssp TTTEEEEETTSS
T ss_pred CCCEEEEEEeec
Confidence 999999999864
No 23
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.3e-11 Score=140.02 Aligned_cols=77 Identities=8% Similarity=0.119 Sum_probs=73.0
Q ss_pred ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeecccccc-ccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~-v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
..+++|++|.|+|++|++||+||+|+. |++||||+|+|++.+ +.+|.+.|++||.|+|+|+++| +++||.||||...
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 976 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 976 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTT-SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHH
Confidence 478999999999999999999999988 899999999999998 8999999999999999999999 8899999999654
No 24
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.13 E-value=3.6e-12 Score=129.76 Aligned_cols=99 Identities=13% Similarity=0.256 Sum_probs=88.1
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC---CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh----
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~---Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~---- 366 (514)
+.|+++.|+|+++.++|+||+++ |++||||.+++ +.++.++.+.. ++||.|.|+|+++|+++++|.||+|.
T Consensus 12 ~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~-kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLI-RIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp SSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTC-SSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhc-CCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 58999999999999999999994 79999999999 67777777765 89999999999999999999999984
Q ss_pred hhhh--ccCCCCceEEEEEEEEec-ceEEEE
Q 010232 367 AWAT--LNLREGTLLEGTVKKIYP-YGAQIR 394 (514)
Q Consensus 367 ~~~~--~~l~~G~iV~G~V~~I~~-~GaFV~ 394 (514)
+|.. ..+++|+++.|+|+++.+ ||+|++
T Consensus 91 p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 5653 378999999999999999 699753
No 25
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.09 E-value=3.7e-11 Score=135.47 Aligned_cols=76 Identities=32% Similarity=0.530 Sum_probs=72.2
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
++++|+++.|+|++|++||+||+|+. +++||||+|+|++.++.++.+.|++||.|+|+|+++| ++++|.||||...
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECSS-SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeCC-CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 68899999999999999999999987 7999999999999999999999999999999999999 7899999999654
No 26
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.08 E-value=2.2e-10 Score=110.66 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=69.0
Q ss_pred cCCCCceEEEEEEEEecceEEEEECC-------CceEEEEEeecccccccc--CcccccCCCCEEEEEEEEEeC-CCeEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGD-------SNRSGLLHISNMSRTRVT--SVSDLLNEGERVKVLVVKSMF-PDKIS 441 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~-------~gi~GLvh~Sels~~~v~--~~~~~~kvGd~VkvkVi~vde-~~rI~ 441 (514)
.+++|++|.|+|++|+++|+||+|.+ .++.|+||+|++++.++. ++.+.|++||.|+|+|+++++ .+++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 58999999999999999999999851 157999999999999988 999999999999999999975 45899
Q ss_pred EEEecCc
Q 010232 442 LSIADLE 448 (514)
Q Consensus 442 LSlK~l~ 448 (514)
||+|+..
T Consensus 158 LS~k~~~ 164 (209)
T 2nn6_I 158 LTTAENE 164 (209)
T ss_dssp EECCSSS
T ss_pred EEEecCC
Confidence 9998754
No 27
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.08 E-value=2e-10 Score=108.04 Aligned_cols=75 Identities=21% Similarity=0.413 Sum_probs=65.7
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc-----------cCcccccCCCCEEEEEEEEEe-C---
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-----------TSVSDLLNEGERVKVLVVKSM-F--- 436 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v-----------~~~~~~~kvGd~VkvkVi~vd-e--- 436 (514)
...+|++++|+|++++++|+||++++ .+||+|+|++.++++ ++..+.+++||.|+|||+.++ +
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~~--~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLGP--MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS--SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred eccCCCEEEEEEeeeccceEEEEECC--ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 47899999999999999999999984 799999999999877 577889999999999999997 2
Q ss_pred -CCeEEEEEecCc
Q 010232 437 -PDKISLSIADLE 448 (514)
Q Consensus 437 -~~rI~LSlK~l~ 448 (514)
..||.||||+.-
T Consensus 156 ~~~rI~ls~k~~g 168 (180)
T 4ayb_E 156 RLPRIALTMRQPY 168 (180)
T ss_dssp ---CEEEECCSTT
T ss_pred ccCcEEEEcCCCC
Confidence 348999999743
No 28
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.07 E-value=1.9e-10 Score=96.39 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=63.0
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC---CEEEEEecc-cc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKA-EL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~---Gi~gFVP~s-el-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
+.|+++.|+|+ +.++|+||+++ |++||||.| ++ +.++.++++.. +||+++|+|+++|.++++|.||+|+.
T Consensus 10 ~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~--~Gd~V~VkV~~vd~~~~kI~lslk~~ 84 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL--VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH--TTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe--CCCEEEEEEEEEECCCCEEEEEEeec
Confidence 68999999999 99999999994 699999999 99 56666677765 99999999999999999999999853
No 29
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.05 E-value=8.3e-10 Score=98.87 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=67.4
Q ss_pred hhcCCCEEEEEEEEEECCeEEEEE-CCEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhh
Q 010232 293 IKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369 (514)
Q Consensus 293 ~~k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~ 369 (514)
.++.|+++.|+|+++.++|+||++ +|++||||.+++ +.++.++.+.. .+||.|.|+|+++|.++++|.||+|....
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~-~vGd~V~vkV~~vd~~~~kI~LSlk~~~~ 81 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHL-SVGDEVQVKVLAVDEEKGKISLSIRATQA 81 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTC-CTTCEEEEEEEEEETTTTEEEEESHHHHH
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccC-CCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 357999999999999999999999 579999999999 56677776654 89999999999999999999999997643
No 30
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=101.90 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=69.9
Q ss_pred hhhHHHhhhcCCCEEEEEEEEEECCeEEEEECCE--EEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCC--Cce
Q 010232 286 AWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIEGL--RAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDT--NDL 360 (514)
Q Consensus 286 ~w~~l~~~~k~GeiV~GkV~~v~~~G~fVdi~Gi--~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~--~rI 360 (514)
.|+.+....+.|+++.|+|+++.++|+||+++|+ +||||.+++ +.++.++.+.. .+||.|.|+|+++|..+ ++|
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~-~~Gd~V~VkV~~vd~~~~~~~i 90 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIV-DVGDKVWVKLIGREMKNDRIKV 90 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHC-CTTCEEEEEEEEEEECSSCEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcC-CCCCEEEEEEEEEeccccCceE
Confidence 4566666678999999999999999999999764 999999999 66777777764 89999999999999764 699
Q ss_pred Eeehhhh
Q 010232 361 ILSEREA 367 (514)
Q Consensus 361 iLS~K~~ 367 (514)
.||+|..
T Consensus 91 ~LSlk~~ 97 (119)
T 2cqo_A 91 SLSMKVV 97 (119)
T ss_dssp EEESTTB
T ss_pred EEEEeec
Confidence 9999964
No 31
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.04 E-value=3.1e-10 Score=99.43 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=69.7
Q ss_pred HhhhhHHHhhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-c-cccCChhhHhhhcCCEEEEEEEEEeCCCCce
Q 010232 284 KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-L-SRVNNFTELKEKVGRRMYVQITRINEDTNDL 360 (514)
Q Consensus 284 ~~~w~~l~~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~-~~i~~~~el~~~VGq~V~vkVl~vD~e~~rI 360 (514)
...|..+...++.|+++.|+|+++.++|+||+++ |++||||.+++ + .+..++.+.. .+||.|.|+|+++|.++++|
T Consensus 18 ~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~-~vGd~V~vkV~~vd~~~~rI 96 (115)
T 2khi_A 18 GSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVV-NVGDVVEVMVLDIDEERRRI 96 (115)
T ss_dssp ---CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTC-CTTCEEEEEEEEEETTTTEE
T ss_pred cCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEE-CCCCEEEEEEEEEECCCCEE
Confidence 4588887778899999999999999999999996 79999999999 3 2555555543 79999999999999999999
Q ss_pred Eeehhh
Q 010232 361 ILSERE 366 (514)
Q Consensus 361 iLS~K~ 366 (514)
.||+|.
T Consensus 97 ~lslk~ 102 (115)
T 2khi_A 97 SLGLKQ 102 (115)
T ss_dssp EECCCC
T ss_pred EEEEEe
Confidence 999985
No 32
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.04 E-value=2.2e-11 Score=140.51 Aligned_cols=78 Identities=8% Similarity=0.113 Sum_probs=0.0
Q ss_pred ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeecccccc-ccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~-v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
..+++|++|.|+|++|++||+||+|++ |++||||+|+|++.+ +.+|.+.|++||.|+|+|++|| +++||.||||...
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 979 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 979 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCC-CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHH
Confidence 378999999999999999999999988 899999999999998 8999999999999999999998 8899999999765
Q ss_pred C
Q 010232 449 S 449 (514)
Q Consensus 449 ~ 449 (514)
.
T Consensus 980 l 980 (1030)
T 3psf_A 980 V 980 (1030)
T ss_dssp -
T ss_pred h
Confidence 3
No 33
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.03 E-value=9.9e-10 Score=90.03 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=60.6
Q ss_pred hcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
++.|+++.|+|+++.++|+||+++ +++||||.+++ +.++ +. ..+||.+.|+|+++|+++++|.||+++.
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~---~~--~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL---EN--LNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG---GG--CCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc---ee--eCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 468999999999999999999996 79999999999 4433 22 2699999999999999999999999864
No 34
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.01 E-value=5.3e-10 Score=105.45 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=65.9
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCC---------ceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDS---------NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~---------gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~L 442 (514)
..+ |++|.|+|++|+++|+||+|... ++.|+||+|++++.++.++.+.|++||.|.|+|++ +++.|
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~----~~i~L 129 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG----DNLRL 129 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE----TTTEE
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC----CeEEE
Confidence 357 99999999999999999999751 58999999999999999999999999999999996 89999
Q ss_pred EEecCc
Q 010232 443 SIADLE 448 (514)
Q Consensus 443 SlK~l~ 448 (514)
|+|+..
T Consensus 130 S~k~~~ 135 (179)
T 3m7n_A 130 STKEEE 135 (179)
T ss_dssp ECCSTT
T ss_pred EEecCC
Confidence 998743
No 35
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.00 E-value=6.7e-11 Score=118.69 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=87.2
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC---CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh----
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE---- 366 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~---Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~---- 366 (514)
+.|+++.|+|+++.++|+||+++ |++||||.|++ +.++.++.+.. .+||.|.|+|+++|+++++|.||+|.
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~-kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYL-KEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTC-CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhcc-CCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 58999999999999999999995 79999999999 67777777764 89999999999999999999999985
Q ss_pred hhhh--ccCCCCceEEEEEEEEe-cceEEEE
Q 010232 367 AWAT--LNLREGTLLEGTVKKIY-PYGAQIR 394 (514)
Q Consensus 367 ~~~~--~~l~~G~iV~G~V~~I~-~~GaFV~ 394 (514)
+|.. ..+..|+.+.|+|..+. ++|++++
T Consensus 89 ~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 89 QRKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 3542 36889999999999999 8888655
No 36
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.98 E-value=6.1e-10 Score=109.33 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=68.4
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccc----cccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT----RVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~----~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
.+++|++|.|+|++++++|+||+|+. ...|+||++++++. +..++.+.|++||.|.|+|+++++++++.||+|+.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecc
Confidence 57999999999999999999999997 79999999999873 45788899999999999999998777999999864
No 37
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.98 E-value=1e-09 Score=106.45 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=66.5
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcc----------cccCCCCEEEEEEEEEe-CC---
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS----------DLLNEGERVKVLVVKSM-FP--- 437 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~----------~~~kvGd~VkvkVi~vd-e~--- 437 (514)
..++|++++|+|+++++||+||+|+. .+||||+|+|++.+..++. +.+++||.|+|+|++++ +.
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 35899999999999999999999985 8999999999866543333 66999999999999998 54
Q ss_pred CeEEEEEecCcCCCCccccchhh
Q 010232 438 DKISLSIADLESEPGLFVSDKER 460 (514)
Q Consensus 438 ~rI~LSlK~l~~~P~~~~~~k~~ 460 (514)
.+|. |||+.-.-||...+.+.+
T Consensus 158 ~~Ig-Smk~~~LG~~~~~~~~~~ 179 (215)
T 2b8k_G 158 HAIG-SIKEDYLGAISHEKRRWK 179 (215)
T ss_dssp EEEE-ECCSTTCEEC--------
T ss_pred EEEE-EcCCCCCCCcchhhHHHH
Confidence 3778 999877777776555443
No 38
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=3.1e-09 Score=91.36 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=63.0
Q ss_pred hhcCCCEEEEEEEEEECCeEEEEEC----CEEEEEecccc-c-cccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh
Q 010232 293 IKQLNEPIEVKFTEWNTGGLLTRIE----GLRAFLPKAEL-L-SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (514)
Q Consensus 293 ~~k~GeiV~GkV~~v~~~G~fVdi~----Gi~gFVP~sel-~-~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~ 366 (514)
..+.|+++.|+|+++.++|+||+++ +++||||.+++ + .++.++.+.. .+||.|.|+|+++|. ++|.||+|.
T Consensus 9 ~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~-~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 9 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVV-SKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHC-CTTCEEEEEEEEEET--TEEEEESTT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEe-CCCCEEEEEEEEEEC--CeeEEEEee
Confidence 3579999999999999999999997 79999999999 4 4566776654 899999999999997 599999996
Q ss_pred h
Q 010232 367 A 367 (514)
Q Consensus 367 ~ 367 (514)
.
T Consensus 86 ~ 86 (103)
T 2eqs_A 86 V 86 (103)
T ss_dssp B
T ss_pred c
Confidence 4
No 39
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.93 E-value=1.3e-09 Score=108.01 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=70.0
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc---cCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV---TSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v---~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
..++|++|.|+|++++++|+||+|+. ...|+||++++++.++ .++++.|++||.|.|+|+++++++++.||+|+.
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEccc
Confidence 47999999999999999999999997 6999999999998887 889999999999999999998778999999865
No 40
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.91 E-value=3.2e-09 Score=99.10 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=58.6
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCc------------ccccCCCCEEEEEEEEEe-CCC-
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV------------SDLLNEGERVKVLVVKSM-FPD- 438 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~------------~~~~kvGd~VkvkVi~vd-e~~- 438 (514)
..+|++++|+|++++++|+||+++. .+||||+|+|++.+..++ ...+++||.|+|+|++++ +.+
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~~--~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 156 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIGP--MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKND 156 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECC--EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCC
Confidence 4799999999999999999999974 679999999986533222 457999999999999998 544
Q ss_pred --eEEEEEec
Q 010232 439 --KISLSIAD 446 (514)
Q Consensus 439 --rI~LSlK~ 446 (514)
++. |||+
T Consensus 157 ~~~ig-sm~~ 165 (172)
T 2c35_B 157 IFAIG-SLMD 165 (172)
T ss_dssp EEEEE-ECCS
T ss_pred cEEEE-EecC
Confidence 555 7765
No 41
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.90 E-value=4e-09 Score=98.53 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=58.8
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCc----------ccccCCCCEEEEEEEEEe-CC---
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV----------SDLLNEGERVKVLVVKSM-FP--- 437 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~----------~~~~kvGd~VkvkVi~vd-e~--- 437 (514)
...+|++++|+|+++++||+||++++ .+||||+|+|++.+..++ ++.+++||.|+|+|++++ +.
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCc
Confidence 35799999999999999999999985 899999999986543222 267999999999999998 54
Q ss_pred CeEEEEEec
Q 010232 438 DKISLSIAD 446 (514)
Q Consensus 438 ~rI~LSlK~ 446 (514)
.+|. |||+
T Consensus 158 ~~ig-sm~~ 165 (171)
T 1y14_B 158 HAIG-SIKE 165 (171)
T ss_dssp EEEE-ECCS
T ss_pred EEEE-EcCC
Confidence 3555 6654
No 42
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.85 E-value=6.4e-09 Score=101.72 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=69.7
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccc-cccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCc
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~-~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l~ 448 (514)
..++|++|.|+|++++++|+||+|+. ...|+||+++++.. +..++++.|++||.|.|+|+++++++++.||+|+..
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~ 130 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRI 130 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEcccc
Confidence 47999999999999999999999997 68999999999974 678899999999999999999987789999998653
No 43
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.84 E-value=9e-10 Score=113.47 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=113.6
Q ss_pred CcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhh----hHHHhhhc--CCCEEEEEEEEEECCeEEEEECCEEEEEecc
Q 010232 253 PVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAW----HRVRQIKQ--LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKA 326 (514)
Q Consensus 253 ~~~~vGd~V~v~Vl~~d~~grliLS~kk~~~~~~w----~~l~~~~k--~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~s 326 (514)
+.+.+||.+.+.|...+...+.+.+.|+...++.. +.+.+.++ .|++++|+|.+++++|++|++++++|+||.+
T Consensus 85 ~~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~s 164 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKK 164 (344)
T ss_dssp TTCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGG
T ss_pred ccccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHH
Confidence 34789999999987555443344555655433222 12233333 8999999999999999999999999999999
Q ss_pred ccccccCChhhHhhhcCCEEEEEEEEEeCCCC--ceEeehhhhhh---hccCC-----------------CCceEEEEEE
Q 010232 327 ELLSRVNNFTELKEKVGRRMYVQITRINEDTN--DLILSEREAWA---TLNLR-----------------EGTLLEGTVK 384 (514)
Q Consensus 327 el~~~i~~~~el~~~VGq~V~vkVl~vD~e~~--rIiLS~K~~~~---~~~l~-----------------~G~iV~G~V~ 384 (514)
++.. .+. +.+|++++|+|++++++++ +|.||++.+-. ...++ +|..-+--|.
T Consensus 165 E~ip-----~E~-~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~LfelEVPEI~dG~VeI~~iaRepG~R~KiAV~ 238 (344)
T 1hh2_P 165 EWIP-----GEE-IKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIVEIKAIAREPGVRTKVAVA 238 (344)
T ss_dssp GSCT-----TCC-CCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHHHHHCHHHHHSSEEEEEEEEETTTEEEEEEE
T ss_pred HcCC-----CcC-CCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHHHHhhcccceeeeEEEEEeecccccccceeEE
Confidence 9942 121 2699999999999997554 89999985410 01233 3444444444
Q ss_pred E----EecceEEEEECCCceEEEEEeeccccc------cccCcc----cccCCCCEEEEEEEEEe-CCCeEEEEE
Q 010232 385 K----IYPYGAQIRIGDSNRSGLLHISNMSRT------RVTSVS----DLLNEGERVKVLVVKSM-FPDKISLSI 444 (514)
Q Consensus 385 ~----I~~~GaFV~I~~~gi~GLvh~Sels~~------~v~~~~----~~~kvGd~VkvkVi~vd-e~~rI~LSl 444 (514)
+ |.|.|+.|-..+. +.-...++|... |-.+|. ..+.+-+.+.+.|. + +.+.+.+..
T Consensus 239 s~d~~iDpvGacvg~~G~--ri~~i~~el~ge~Idii~~s~d~~~fi~nal~Pa~v~~v~~~--d~~~~~~~v~v 309 (344)
T 1hh2_P 239 SNDPNVDPIGACIGEGGS--RIAAILKELKGEKLDVLKWSDDPKQLIANALAPATVIEVEIL--DKENKAARVLV 309 (344)
T ss_dssp ESSTTSCHHHHHHCTTST--THHHHHHHTTTCEEEEEECCSSHHHHHHHHTCSSCCSEEEEE--ETTTTEEEEEE
T ss_pred ccCCCccccceeeccCCc--EeHHHHHHhCCCeeeEEecCCCHHHHHHHhcCccEEEEEEEE--cCCCCEEEEEE
Confidence 3 6678888766543 222222333221 112332 33666666666553 4 445555555
No 44
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.75 E-value=4.4e-09 Score=98.42 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=59.9
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCc----------ccccCCCCEEEEEEEEEe-CC---
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSV----------SDLLNEGERVKVLVVKSM-FP--- 437 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~----------~~~~kvGd~VkvkVi~vd-e~--- 437 (514)
...+|++++|+|++++++|+||+++. ++||||+|+|++.+..++ ...+++||+|+|+|++++ +.
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~~--~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIGP--LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBTT--BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeCC--eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 46899999999999999999999985 689999999986655444 568999999999999998 54
Q ss_pred CeEEEEEe
Q 010232 438 DKISLSIA 445 (514)
Q Consensus 438 ~rI~LSlK 445 (514)
.+|. |||
T Consensus 159 ~~Ig-tm~ 165 (172)
T 3h0g_G 159 FAIA-TMK 165 (172)
T ss_dssp EEEE-ECC
T ss_pred eEEE-EcC
Confidence 3566 665
No 45
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.67 E-value=3.7e-08 Score=84.48 Aligned_cols=83 Identities=20% Similarity=0.247 Sum_probs=64.0
Q ss_pred cCCCEEEEEEEEEE---CCeEEEEE--CCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhh
Q 010232 295 QLNEPIEVKFTEWN---TGGLLTRI--EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWA 369 (514)
Q Consensus 295 k~GeiV~GkV~~v~---~~G~fVdi--~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~ 369 (514)
+.++.++|+|+..+ .+| |+.- +|.++|+|++.+... |- .
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~-----------~~------------------------~ 55 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSG-----------AA------------------------V 55 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSS-----------SC------------------------C
T ss_pred cccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecC-----------Cc------------------------c
Confidence 35678899999996 368 5544 358999999999311 10 0
Q ss_pred hccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc
Q 010232 370 TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV 414 (514)
Q Consensus 370 ~~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v 414 (514)
...+++|++|++.|..+++||+||+|.+ +++||||+|+|+|.++
T Consensus 56 ~~~l~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 56 RGNPQQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCCCCTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEECCC
T ss_pred ccCCCCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCccCcC
Confidence 1257999999999999999999999987 7999999999998765
No 46
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.65 E-value=6.5e-08 Score=99.64 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=74.7
Q ss_pred hcCCEEEEEEEEEeCCCCceEeehhhhhh-------------hccCCCCceEEEEEEEEecceEEEEECCCceEEEEEee
Q 010232 341 KVGRRMYVQITRINEDTNDLILSEREAWA-------------TLNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHIS 407 (514)
Q Consensus 341 ~VGq~V~vkVl~vD~e~~rIiLS~K~~~~-------------~~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~S 407 (514)
.+|+.+.+.|...|.. ++.+.+.|+.+. ....+.|++|+|+|.+++++|+||+++ +.+|+||.+
T Consensus 88 ~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG--k~EgiLp~s 164 (344)
T 1hh2_P 88 EVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG--KLETRLPKK 164 (344)
T ss_dssp CTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET--TEEEEEEGG
T ss_pred cCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC--CeEEEEeHH
Confidence 5999999999876643 334444454321 113448999999999999999999997 699999999
Q ss_pred ccccccccCcccccCCCCEEEEEEEEEe-CCC--eEEEEEe
Q 010232 408 NMSRTRVTSVSDLLNEGERVKVLVVKSM-FPD--KISLSIA 445 (514)
Q Consensus 408 els~~~v~~~~~~~kvGd~VkvkVi~vd-e~~--rI~LSlK 445 (514)
+++ |.+.|++||+|+|+|++++ +++ +|.||.+
T Consensus 165 E~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 165 EWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 997 5688999999999999997 444 5556553
No 47
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.64 E-value=1.8e-08 Score=88.50 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=60.6
Q ss_pred hhcCCCEEEEEEEEEECCeEEEEEC--CEEEEEeccccc--cccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 293 IKQLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAELL--SRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 293 ~~k~GeiV~GkV~~v~~~G~fVdi~--Gi~gFVP~sel~--~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
.++.|+++.|+|+++.++|+||+++ +..||+|.+++. .++.++.+.. .+||.|+|+|+++|.++++|.||+|+.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~Gd~V~vkV~~vd~~~~~i~Lslk~~ 95 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKL-KVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCC-CTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEe-CCCCEEEEEEEEEeCCCCEEEEEEchh
Confidence 3579999999999999999999997 588888887762 2222333332 799999999999999999999999853
No 48
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.62 E-value=2e-08 Score=100.33 Aligned_cols=72 Identities=22% Similarity=0.334 Sum_probs=65.8
Q ss_pred hcCCCEEEEEEEEEECCeEEEEE---CCEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi---~Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~ 366 (514)
.+.|+++.|+|+++.++|+||++ +|++||||.|++ +.++.++.+.. .+||.|.|+|+++|+++++|.||+|.
T Consensus 9 ~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~-~vGd~V~VkVi~vd~~~g~I~LSlk~ 84 (266)
T 3cw2_C 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVL-KENRKVIVKVIRVDRRKGTVDVSLKK 84 (266)
T ss_dssp CCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHS-CTTCEEEEEECCCCSSSCCCBEESTT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhC-cCCCEEEEEEEEEeCCCCEEEEEEEe
Confidence 46899999999999999999999 479999999999 67788887765 89999999999999999999999984
No 49
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.60 E-value=1.8e-08 Score=95.08 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=60.8
Q ss_pred hcCCCEEEEEEEEEECCeEEEEECCEEEEEecccc-ccccC-----------ChhhHhhhcCCEEEEEEEEEeCCCC---
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVN-----------NFTELKEKVGRRMYVQITRINEDTN--- 358 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel-~~~i~-----------~~~el~~~VGq~V~vkVl~vD~e~~--- 358 (514)
...|+++.|+|++++++|+||++++++||+|.+++ +.++. ++.+. ..+|+.|+|+|+++|...+
T Consensus 79 ~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 79 PEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKV-LEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCE-ECTTCEEEEEEEEEECCC----
T ss_pred cCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeE-EcCCCEEEEEEEEEEcccCCCC
Confidence 46999999999999999999999889999999999 44432 33333 3799999999999998755
Q ss_pred --ceEeehhhh
Q 010232 359 --DLILSEREA 367 (514)
Q Consensus 359 --rIiLS~K~~ 367 (514)
+|.||+|.+
T Consensus 158 ~~~I~lS~k~~ 168 (187)
T 1go3_E 158 GSKIALTMRQP 168 (187)
T ss_dssp -CEEEEECCST
T ss_pred ccEEEEEEcCC
Confidence 999999863
No 50
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.52 E-value=1.2e-08 Score=114.13 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=3.5
Q ss_pred EcCCCcEEEE-ehHHHH---HhhhhHHHhhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhh
Q 010232 268 RTLSGRPLLS-TRRLFR---KMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEK 341 (514)
Q Consensus 268 ~d~~grliLS-~kk~~~---~~~w~~l~~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~ 341 (514)
++.+|++.++ ..+... ...|+.+...++.|+++.|+|+++.++|+||++. |++||||+|++ +.++.++.+.. +
T Consensus 605 i~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~-k 683 (726)
T 4aid_A 605 INDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVL-K 683 (726)
T ss_dssp ---------CCSCHHHHHHHHHC---------------------------------------------------------
T ss_pred EECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccC-C
Confidence 4467777443 323222 2457777777899999999999999999999995 79999999999 67888887765 8
Q ss_pred cCCEEEEEEEEEeCCCCceEeehhhhh
Q 010232 342 VGRRMYVQITRINEDTNDLILSEREAW 368 (514)
Q Consensus 342 VGq~V~vkVl~vD~e~~rIiLS~K~~~ 368 (514)
+||.|+|+|+++|+ +++|.||+|...
T Consensus 684 vGD~V~VkVi~iD~-~grI~LS~K~~~ 709 (726)
T 4aid_A 684 EGQMVKVKLLGFDD-RGKTKLSMKVVD 709 (726)
T ss_dssp ---------------------------
T ss_pred CCCEEEEEEEEECC-CCcEEEEEeecc
Confidence 99999999999998 789999999754
No 51
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.45 E-value=7.4e-08 Score=90.41 Aligned_cols=73 Identities=8% Similarity=0.213 Sum_probs=58.9
Q ss_pred hcCCCEEEEEEEEEECCeEEEEECCEEEEEecccc-cccc-----------CChhhHhhhcCCEEEEEEEEEeCC----C
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRV-----------NNFTELKEKVGRRMYVQITRINED----T 357 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel-~~~i-----------~~~~el~~~VGq~V~vkVl~vD~e----~ 357 (514)
...|+++.|+|++++++|+||++++++||+|.+++ +.++ ++.... ..+|+.|+|+|+++|.+ .
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~-~~~Gd~VrvkV~~v~~~~~~~~ 157 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKV-IQKGDKVRARVISVASTVTGRL 157 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCC-CCTTCEEEEEEEEECC------
T ss_pred ccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeE-ECCCCEEEEEEEEEeCCCCccc
Confidence 46999999999999999999999889999999999 4433 122222 37999999999999864 3
Q ss_pred CceEeehhhh
Q 010232 358 NDLILSEREA 367 (514)
Q Consensus 358 ~rIiLS~K~~ 367 (514)
.+|.||+|++
T Consensus 158 ~rI~ls~k~~ 167 (180)
T 4ayb_E 158 PRIALTMRQP 167 (180)
T ss_dssp -CEEEECCST
T ss_pred CcEEEEcCCC
Confidence 4899999974
No 52
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.45 E-value=2.2e-08 Score=112.26 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred EcCCCcEEEEehHHH----HHhhhhHHHhhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhh
Q 010232 268 RTLSGRPLLSTRRLF----RKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEK 341 (514)
Q Consensus 268 ~d~~grliLS~kk~~----~~~~w~~l~~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~ 341 (514)
++.+|.+.++..... ....++.+....+.|+++.|+|+++.++|+||++. |++||||.|++ +.++.++.+.. +
T Consensus 595 I~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~-~ 673 (723)
T 3cdi_A 595 IEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL-Q 673 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCccccc-C
Confidence 445777766543322 12345566667789999999999999999999995 79999999999 67787777764 8
Q ss_pred cCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 342 VGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 342 VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
+||+|+|+|+++|+ +++|.||+|..
T Consensus 674 vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 674 MGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp --------------------------
T ss_pred CCCEEEEEEEEECC-CCcEEEEEEec
Confidence 99999999999998 89999999964
No 53
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.2e-07 Score=109.07 Aligned_cols=74 Identities=8% Similarity=0.076 Sum_probs=66.5
Q ss_pred hhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccc-cCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh
Q 010232 292 QIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (514)
Q Consensus 292 ~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~-i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~ 366 (514)
+.++.|+++.|+|+++.++|+||+++ |++|+||+|+| +.+ +.++.+.. .+||.|+|+|++||.++++|.||+|.
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~-kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIY-EIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTS-CTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcC-CCCCEEEEEEEEEECCCCEEEEEecH
Confidence 44689999999999999999999996 79999999999 555 57777765 89999999999999999999999984
No 54
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.36 E-value=4.8e-07 Score=87.25 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=63.3
Q ss_pred hcCCCEEEEEEEEEECCeEEEEEC---------CEEEEEecccc-ccccC--ChhhHhhhcCCEEEEEEEEEeCCCCceE
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRIE---------GLRAFLPKAEL-LSRVN--NFTELKEKVGRRMYVQITRINEDTNDLI 361 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi~---------Gi~gFVP~sel-~~~i~--~~~el~~~VGq~V~vkVl~vD~e~~rIi 361 (514)
.+.|++|.|+|+++.++|+||+|. +++|+||.+++ +.+.. ++.+.+ .+|+.|.|+|+++++.++++.
T Consensus 79 p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l-~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 79 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSF-RPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTC-CSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhc-CCCCEEEEEEEEEeCCCCeEE
Confidence 479999999999999999999984 56899999999 45555 666664 899999999999998878999
Q ss_pred eehhhh
Q 010232 362 LSEREA 367 (514)
Q Consensus 362 LS~K~~ 367 (514)
||.|..
T Consensus 158 LS~k~~ 163 (209)
T 2nn6_I 158 LTTAEN 163 (209)
T ss_dssp EECCSS
T ss_pred EEEecC
Confidence 999864
No 55
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.36 E-value=8.8e-07 Score=98.50 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=62.3
Q ss_pred cCCCCc--eEEEEEEEEecceEEEEECCCceEEEEEeecccc--ccc----------cCcccccCCCCEEEEEEEEEe-C
Q 010232 372 NLREGT--LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSR--TRV----------TSVSDLLNEGERVKVLVVKSM-F 436 (514)
Q Consensus 372 ~l~~G~--iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~--~~v----------~~~~~~~kvGd~VkvkVi~vd-e 436 (514)
.-++|+ +++|+|++|+++|+||.|.+.|++||||+|+|++ ++. .+....|++||+|+|+|+++| +
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 457899 9999999999999999995448999999999973 221 144577999999999999998 7
Q ss_pred CCeEEEEE
Q 010232 437 PDKISLSI 444 (514)
Q Consensus 437 ~~rI~LSl 444 (514)
+++|.+++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 89999997
No 56
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.34 E-value=2.3e-07 Score=104.87 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=65.7
Q ss_pred hcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~ 366 (514)
++.|+++.|+|+++.++|+||+++ +++||||+|+| +.++.++.+.. .+||.|+|+|+++|.++++|.||+|.
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~-~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVV-KAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHC-CTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhhee-CCCCEEEEEEEEEECCCCEEEEEEec
Confidence 579999999999999999999996 58999999999 66677787765 89999999999999999999999983
No 57
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.31 E-value=2.2e-06 Score=83.69 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=63.0
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|.+++||+|.|+|+.+.+++++|+|+....|+||.+++.... + .++
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~---------~-~~~------------------------ 98 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMK---------P-NKK------------------------ 98 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCC---------T-TSC------------------------
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccc---------c-ccc------------------------
Confidence 678999999999999999999999999899999999985210 0 000
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk 280 (514)
-.+.+++||.|.|+|++.+.++++.||++.
T Consensus 99 ---~~~~l~~GD~V~arVi~v~~~~~i~LS~r~ 128 (229)
T 2ba0_A 99 ---PNEVLDIGDAIIAKVLNIDPKMKVTLTMKD 128 (229)
T ss_dssp ---GGGTCCTTCEEEEEEEEECTTCCEEEECCS
T ss_pred ---hhcccCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 134589999999999999888999999864
No 58
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.28 E-value=1.6e-06 Score=83.20 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=54.3
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc-------------------cCcccccCCCCEEEEEEEE
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-------------------TSVSDLLNEGERVKVLVVK 433 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v-------------------~~~~~~~kvGd~VkvkVi~ 433 (514)
..+|++++|+|++++++|+||+++ .++|++|++++.+++. ++....+++||.|++||++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 589999999999999999999995 4899999999987654 4556789999999999999
Q ss_pred Ee
Q 010232 434 SM 435 (514)
Q Consensus 434 vd 435 (514)
++
T Consensus 157 v~ 158 (203)
T 3ayh_B 157 ED 158 (203)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 59
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.28 E-value=2e-06 Score=84.21 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|.+++||+|.|+|+++.+++++|+||.+.+|+||.+++.... ..+ +.
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~------------~~~---------------~~------ 108 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP------------FNP---------------AV------ 108 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC------------CCT---------------TT------
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCc------------ccc---------------ch------
Confidence 689999999999999999999999999999999999984210 000 00
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEeh
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTR 279 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~k 279 (514)
.+-...+++||.|.|+|++.+.++++.||++
T Consensus 109 -~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k 139 (235)
T 2z0s_A 109 -DDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQ 139 (235)
T ss_dssp -TCCTTSSCTTCEEEEEEEEECTTSCEEEECC
T ss_pred -hhHhhcCCCCCEEEEEEEEECCCCcEEEEEe
Confidence 0113568999999999999888889999976
No 60
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.26 E-value=1.5e-06 Score=86.07 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=63.7
Q ss_pred ccCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccC
Q 010232 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (514)
Q Consensus 167 ~~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~ 246 (514)
-|.+++||+|.|+|+++.+++++|+++...+|+||.+++.... .++ +
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~------------~~~---------------~------ 115 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRS------------INV---------------G------ 115 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC------------CCT---------------T------
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCc------------ccc---------------c------
Confidence 4789999999999999999999999999999999999984210 000 0
Q ss_pred CCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 010232 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (514)
Q Consensus 247 ~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk 280 (514)
.+-...+++||.|.|+|++.+.++++.||++.
T Consensus 116 --~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~ 147 (251)
T 2je6_I 116 --EDLRRYLDVGDYVIARIENFDRSIDPVLSVKG 147 (251)
T ss_dssp --CCCSSSCCTTCEEEEEEEEEETTEEEEEECCS
T ss_pred --cchhhcCCCCCEEEEEEEEECCCCcEEEEEcc
Confidence 01135689999999999998888899999864
No 61
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.4e-07 Score=109.19 Aligned_cols=75 Identities=8% Similarity=0.071 Sum_probs=0.0
Q ss_pred hhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccc-cCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 292 QIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSR-VNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 292 ~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~-i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
+.++.|+++.|+|+++.++|+||+++ |++|+||.|+| +.+ +.++.+.. .+||.|+|+|++||.++++|.||+|..
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~-kvGd~V~vkVl~VD~~~~rI~LSlk~~ 978 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIY-EIGKTYPAKVIYIDYANITAEVSLLDH 978 (1030)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcC-CCCCEEEEEEEEEECCCCEEEEEechH
Confidence 34679999999999999999999996 79999999999 555 57777765 899999999999999999999999853
No 62
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.18 E-value=3.2e-06 Score=91.41 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=62.1
Q ss_pred cCCCCceEEEEEEEEecc--eEEEEECCCceEEEEEeeccccccc---------cCcccccCCCCEEEEEEEEEe-CCCe
Q 010232 372 NLREGTLLEGTVKKIYPY--GAQIRIGDSNRSGLLHISNMSRTRV---------TSVSDLLNEGERVKVLVVKSM-FPDK 439 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~--GaFV~I~~~gi~GLvh~Sels~~~v---------~~~~~~~kvGd~VkvkVi~vd-e~~r 439 (514)
...+|.++.|+|++|.|+ ||||+|+. |..||+|++++++.++ .++.+.+++||.|.|+|++.. ..+.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCC
Confidence 467999999999999999 99999998 8999999999988764 346688999999999999865 4455
Q ss_pred EEEEEec
Q 010232 440 ISLSIAD 446 (514)
Q Consensus 440 I~LSlK~ 446 (514)
-.||..-
T Consensus 121 a~lTt~i 127 (517)
T 2bx2_L 121 AALTTFI 127 (517)
T ss_dssp CEEESSC
T ss_pred ceEEeeE
Confidence 5555543
No 63
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.17 E-value=5.6e-06 Score=81.60 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=63.0
Q ss_pred CCCCCCEEEEEEEE----EeCCeEEEEeCC---ceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecccc
Q 010232 169 EPKPGDFVIGVVVS----GNENKLDVNVGA---DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDA 241 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~----v~~~Gv~VdIG~---k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~ 241 (514)
.=+.|++|+|+|.+ ++++.++||+|. +.+|+||.+|+.|.
T Consensus 4 ~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~--------------------------------- 50 (251)
T 2asb_A 4 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG--------------------------------- 50 (251)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT---------------------------------
T ss_pred hhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC---------------------------------
Confidence 34579999999999 899999999997 69999999998642
Q ss_pred ccccCCCCCCCCcccCCCEEEEEEEEEcC---CCcEEEEehHHHHHhhhh
Q 010232 242 IAMSGGSGPGRPVVETGTVLFAEVLGRTL---SGRPLLSTRRLFRKMAWH 288 (514)
Q Consensus 242 ~~l~~~~~~~~~~~~vGd~V~v~Vl~~d~---~grliLS~kk~~~~~~w~ 288 (514)
..|++||.|+|+|++++. .++++||+..+.....|-
T Consensus 51 -----------E~~~~GDrIkayV~~V~~~~~gpqIiLSRt~p~lvk~Lf 89 (251)
T 2asb_A 51 -----------ESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLVRKLF 89 (251)
T ss_dssp -----------CCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHHHHHHH
T ss_pred -----------ccCCCCCEEEEEEEEEEcCCCCCEEEEEeccHHHHHHHH
Confidence 348999999999999643 478999999887655543
No 64
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.17 E-value=2.7e-06 Score=79.15 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=55.0
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccc-----cCCh-------hhHhhhcCCEEEEEEEEEeCCCC--ce
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-----VNNF-------TELKEKVGRRMYVQITRINEDTN--DL 360 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~-----i~~~-------~el~~~VGq~V~vkVl~vD~e~~--rI 360 (514)
..|++++|+|++++++|+||+++..+||||.++|... ..++ ......+|+.|+|+|+++|.+.+ ..
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~ 159 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFA 159 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcEE
Confidence 5899999999999999999999888999999998422 1110 01123699999999999997755 23
Q ss_pred Eeehhh
Q 010232 361 ILSERE 366 (514)
Q Consensus 361 iLS~K~ 366 (514)
+.|+|.
T Consensus 160 igsm~~ 165 (172)
T 2c35_B 160 IGSLMD 165 (172)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 446664
No 65
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.14 E-value=4.8e-06 Score=78.30 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=58.2
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC-----------CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEe
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE-----------GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLIL 362 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~-----------Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiL 362 (514)
+ |++|.|+|+++.++|+||+|. +++|+||.+++ +.+..++.+.+ .+||.|.|+|++ +++.|
T Consensus 57 ~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~-~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 57 K-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAV-GYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp T-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTC-CTTCEEEEEEEE-----TTTEE
T ss_pred C-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcC-CCCCEEEEEEEC-----CeEEE
Confidence 6 999999999999999999994 68999999999 56666777765 899999999996 78999
Q ss_pred ehhhh
Q 010232 363 SEREA 367 (514)
Q Consensus 363 S~K~~ 367 (514)
|.|..
T Consensus 130 S~k~~ 134 (179)
T 3m7n_A 130 STKEE 134 (179)
T ss_dssp ECCST
T ss_pred EEecC
Confidence 99864
No 66
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.14 E-value=4.8e-06 Score=77.55 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=54.6
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccc-cCCh----------hhHhhhcCCEEEEEEEEEeCCCC--ceE
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNF----------TELKEKVGRRMYVQITRINEDTN--DLI 361 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~-i~~~----------~el~~~VGq~V~vkVl~vD~e~~--rIi 361 (514)
..|++++|+|++++++|+||+++..+||||.|+|..+ .-++ ++. ..+|+.|+|+|+++|.+.+ ..+
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~~~~~i 160 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVSSIHAI 160 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCE-ECTTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceE-ECCCCEEEEEEEEEEcCCCCcEEE
Confidence 5999999999999999999999779999999999422 1111 122 3789999999999997664 233
Q ss_pred eehhh
Q 010232 362 LSERE 366 (514)
Q Consensus 362 LS~K~ 366 (514)
.|++.
T Consensus 161 gsm~~ 165 (171)
T 1y14_B 161 GSIKE 165 (171)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 35554
No 67
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.13 E-value=6.6e-08 Score=108.88 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=41.4
Q ss_pred EcCCCcEEEEehHHHH-Hh---hhhHHH--hhhcCCCEEEEEEEEEECCeEEEEE-CCEEEEEecccc-----ccccCCh
Q 010232 268 RTLSGRPLLSTRRLFR-KM---AWHRVR--QIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-----LSRVNNF 335 (514)
Q Consensus 268 ~d~~grliLS~kk~~~-~~---~w~~l~--~~~k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel-----~~~i~~~ 335 (514)
++.+|.+.+|...... .. ..+.+. ...+.|+++.|+|+++.++|+||++ +|++||||+|++ +.++.++
T Consensus 633 I~~dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~ 712 (757)
T 1e3p_A 633 IEDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENV 712 (757)
T ss_dssp -------CCCBSSHHHHCC---------------------CBEEECC-CSCEECCC---CCCCC----------------
T ss_pred ecCCceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCc
Confidence 3456777776543321 11 223343 4568999999999999999999999 579999999999 4677777
Q ss_pred hhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 336 TELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 336 ~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
.+.. ++||+|+|+|+++|+ +++|.||+|..
T Consensus 713 ~~~~-~vGd~V~VkVi~vd~-~grI~LS~k~~ 742 (757)
T 1e3p_A 713 EDVL-GVGQKVQVEIAEIDS-RGKLSLIPVIE 742 (757)
T ss_dssp ---C-CSSCBCCCCCCCCCS-SCC--------
T ss_pred cccc-CCCCEEEEEEEEECC-CCCEEEEEecC
Confidence 7764 899999999999998 89999999863
No 68
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.11 E-value=4.6e-06 Score=80.89 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=53.8
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc--------------cCcccccCCCCEEEEEEEEEe
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV--------------TSVSDLLNEGERVKVLVVKSM 435 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v--------------~~~~~~~kvGd~VkvkVi~vd 435 (514)
.-.+|++++|+|++++++|+||++.+ .++||+|++++..++. ++-...|++||.|++||++++
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 35889999999999999999999965 4899999999976543 344677999999999999987
No 69
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.08 E-value=4.6e-06 Score=80.74 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=54.4
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccc-cCCh----------hhHhhhcCCEEEEEEEEEeCCCC--ceE
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNF----------TELKEKVGRRMYVQITRINEDTN--DLI 361 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~-i~~~----------~el~~~VGq~V~vkVl~vD~e~~--rIi 361 (514)
+.|++++|+|++++++|+||+++.++||||.++|..+ ..++ ++. ..+|+.|+|+|+++|.+.+ ..+
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~-~~~Gd~VrVkV~~vd~~~~~i~~I 160 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVSSIHAI 160 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCE-EETTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccccE-ECCCCEEEEEEEEEEcCCCccEEE
Confidence 6999999999999999999999779999999999432 1111 122 3799999999999997654 222
Q ss_pred eehhh
Q 010232 362 LSERE 366 (514)
Q Consensus 362 LS~K~ 366 (514)
.|+|.
T Consensus 161 gSmk~ 165 (215)
T 2b8k_G 161 GSIKE 165 (215)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 26554
No 70
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.06 E-value=4.5e-06 Score=94.44 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=53.6
Q ss_pred ceEEEEEEEEecceEEEEECCCceEEEEEeeccc--cccc-----------cC----cccccCCCCEEEEEEEEEe-C--
Q 010232 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS--RTRV-----------TS----VSDLLNEGERVKVLVVKSM-F-- 436 (514)
Q Consensus 377 ~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels--~~~v-----------~~----~~~~~kvGd~VkvkVi~vd-e-- 436 (514)
+++.|+|++|+++|+||.|.+.|++||||+|+|+ .++. .+ ....|++||+|+|+|+.++ +
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 7999999999999999999876899999999996 4331 23 2578999999999999998 5
Q ss_pred -CCeEEEEEe
Q 010232 437 -PDKISLSIA 445 (514)
Q Consensus 437 -~~rI~LSlK 445 (514)
++||.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 589999986
No 71
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.05 E-value=4e-06 Score=85.28 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=62.7
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccc----cc------cCcccccCCCCEEEEEEEEEeCCCeEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT----RV------TSVSDLLNEGERVKVLVVKSMFPDKIS 441 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~----~v------~~~~~~~kvGd~VkvkVi~vde~~rI~ 441 (514)
..++|++|.|+|++++++|+||+|+. ...|++|+|+++.. |. .++++.|++||.|.|+|++++++.++.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~~~~i~ 170 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVS 170 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCCCCCEE
Confidence 47999999999999999999999996 47899999998752 22 245578999999999999998888999
Q ss_pred EEEec
Q 010232 442 LSIAD 446 (514)
Q Consensus 442 LSlK~ 446 (514)
||+|+
T Consensus 171 LStr~ 175 (308)
T 2nn6_H 171 LHTRS 175 (308)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99985
No 72
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.01 E-value=5.3e-06 Score=96.05 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=60.2
Q ss_pred CceEEEEEEEEecceEEEEECCCceEEEEEeeccc--cccc-----------cC----cccccCCCCEEEEEEEEEeC--
Q 010232 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMS--RTRV-----------TS----VSDLLNEGERVKVLVVKSMF-- 436 (514)
Q Consensus 376 G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels--~~~v-----------~~----~~~~~kvGd~VkvkVi~vde-- 436 (514)
|+++.|+|++|+++|+||.|.+.|++||||+++|+ .++. .+ ....|++||+|+|+|+.++.
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 99999999999999999999876899999999997 4431 22 45789999999999998874
Q ss_pred --CCeEEEEEe
Q 010232 437 --PDKISLSIA 445 (514)
Q Consensus 437 --~~rI~LSlK 445 (514)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 379999997
No 73
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.97 E-value=2.3e-06 Score=79.90 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=55.7
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccc-cCChh---------hHhhhcCCEEEEEEEEEeCCCCce--Ee
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSR-VNNFT---------ELKEKVGRRMYVQITRINEDTNDL--IL 362 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~-i~~~~---------el~~~VGq~V~vkVl~vD~e~~rI--iL 362 (514)
..|++++|+|++++++|+||+++.++||||.++|... .-++. +....+|+.|+|+|+++|.+.+++ +.
T Consensus 83 ~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~Ig 162 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFAIA 162 (172)
T ss_dssp CTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEEEE
T ss_pred CCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceEEE
Confidence 5899999999999999999999889999999999422 11111 112379999999999999876432 22
Q ss_pred ehhhh
Q 010232 363 SEREA 367 (514)
Q Consensus 363 S~K~~ 367 (514)
|+|++
T Consensus 163 tm~~~ 167 (172)
T 3h0g_G 163 TMKED 167 (172)
T ss_dssp ECCST
T ss_pred EcCCC
Confidence 66654
No 74
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.92 E-value=2.9e-05 Score=80.41 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEEEE----EeCCeEEEEeCC---ceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecccc
Q 010232 169 EPKPGDFVIGVVVS----GNENKLDVNVGA---DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDA 241 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~----v~~~Gv~VdIG~---k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~ 241 (514)
.-+.|++|+|+|.+ ++++++|||+|. +.+|+||.+|+.|.
T Consensus 127 ~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~--------------------------------- 173 (366)
T 1k0r_A 127 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG--------------------------------- 173 (366)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTT---------------------------------
T ss_pred HhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCC---------------------------------
Confidence 35599999999999 999999999997 69999999998642
Q ss_pred ccccCCCCCCCCcccCCCEEEEEEEEEcC---CCcEEEEehHHHHH
Q 010232 242 IAMSGGSGPGRPVVETGTVLFAEVLGRTL---SGRPLLSTRRLFRK 284 (514)
Q Consensus 242 ~~l~~~~~~~~~~~~vGd~V~v~Vl~~d~---~grliLS~kk~~~~ 284 (514)
..|++||.|+|+|++++. ..+++||+..+...
T Consensus 174 -----------E~~~~GDrVkvyV~~V~~~~kgpqI~LSRT~p~lv 208 (366)
T 1k0r_A 174 -----------ESYEHGNRLRCYVVGVTRGAREPLITLSRTHPNLV 208 (366)
T ss_dssp -----------CCCCTTCEEEEEEEEEECCSSSCEEEEESSCHHHH
T ss_pred -----------ccCCCCCEEEEEEEEEecCCCccEEEEEeCChHHH
Confidence 347999999999999653 35789999877543
No 75
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.85 E-value=3.3e-05 Score=72.45 Aligned_cols=72 Identities=10% Similarity=0.043 Sum_probs=62.7
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSl 444 (514)
..++||+|.|+|+.+...+++|+|+..-..|++|.+++. ...++.+..|++||.|.|+|..++.+.++.||+
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc 75 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEKELEAEIEC 75 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCTTSCCEEES
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecCCCceEEEe
Confidence 368999999999999999999999961289999999886 345678889999999999999988778999993
No 76
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.81 E-value=2.5e-05 Score=80.94 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=57.0
Q ss_pred cCCCCceEEEEEEE----EecceEEEEECC--CceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEE
Q 010232 372 NLREGTLLEGTVKK----IYPYGAQIRIGD--SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSI 444 (514)
Q Consensus 372 ~l~~G~iV~G~V~~----I~~~GaFV~I~~--~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSl 444 (514)
.-++|++|+|+|.+ +.+.++||+|+. .+++|+||.+|+. |.+.|++||+|+|+|++++ +.+...+.|
T Consensus 127 ~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgpqI~L 200 (366)
T 1k0r_A 127 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITL 200 (366)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEE
T ss_pred HhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCccEEEE
Confidence 45699999999999 999999999984 0289999999986 4689999999999999997 444444444
Q ss_pred ecC
Q 010232 445 ADL 447 (514)
Q Consensus 445 K~l 447 (514)
...
T Consensus 201 SRT 203 (366)
T 1k0r_A 201 SRT 203 (366)
T ss_dssp ESS
T ss_pred EeC
Confidence 333
No 77
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.68 E-value=0.00018 Score=67.43 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=59.5
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCC-ceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGA-DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~-k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~ 246 (514)
|.+++||+|.|+|+.+...+++||||. ...|+||.+.+....
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~------------------------------------- 45 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNAS------------------------------------- 45 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCC-------------------------------------
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchh-------------------------------------
Confidence 678999999999999999999999998 799999988763110
Q ss_pred CCCCCCCcccCCCEEEEEEEEEcCCCcEEEE
Q 010232 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLS 277 (514)
Q Consensus 247 ~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS 277 (514)
.+-.+.+++||.|.|+|...+.++.+.||
T Consensus 46 --k~~r~~l~~GDlV~ArV~~~~~~~~~~Lt 74 (175)
T 2ja9_A 46 --KKNRPTLQVGDLVYARVCTAEKELEAEIE 74 (175)
T ss_dssp --SSSCCCCCTTCEEEEEEEECCTTSCCEEE
T ss_pred --hhhhccCCCCCEEEEEEEEecCCCceEEE
Confidence 01146689999999999988888888888
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.56 E-value=0.00013 Score=71.78 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=56.9
Q ss_pred cCCCEEEEEEEE----EECCeEEEEECC----EEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCC--CceEeeh
Q 010232 295 QLNEPIEVKFTE----WNTGGLLTRIEG----LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDT--NDLILSE 364 (514)
Q Consensus 295 k~GeiV~GkV~~----v~~~G~fVdi~G----i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~--~rIiLS~ 364 (514)
+.|++|+|+|.+ +.+..++|+++. .+|+||.+|+... +. +.+|++|+++|+++++.. .+|+||+
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~-----E~-~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG-----ES-YEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT-----CC-CCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCC-----cc-CCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 589999999999 899999999975 9999999999421 21 269999999999998764 6899999
Q ss_pred hhh
Q 010232 365 REA 367 (514)
Q Consensus 365 K~~ 367 (514)
..+
T Consensus 80 t~p 82 (251)
T 2asb_A 80 THP 82 (251)
T ss_dssp SCH
T ss_pred ccH
Confidence 854
No 79
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.44 E-value=5.1e-05 Score=77.12 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=60.8
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|.+++||+|.|+|+++...+++|+|+....|+++.+++.... .+. ......|...+
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~g-----g~i----------------R~~~~~D~~~m--- 146 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPG-----GEL----------------RRRSAEDELAM--- 146 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC----------------------------------CHHH---
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhcccc-----cee----------------ecccchhhhhh---
Confidence 689999999999999999999999998788999888873100 000 00000000001
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk 280 (514)
.+.+++||.|.|+|+..+.++.+.||++.
T Consensus 147 ----~~~l~vGDlV~ArVisv~~~~~i~LStr~ 175 (308)
T 2nn6_H 147 ----RGFLQEGDLISAEVQAVFSDGAVSLHTRS 175 (308)
T ss_dssp ----HHHSCSSCEECCEEEEEETTTEEEEECCS
T ss_pred ----hccCCCCCEEEEEEEEcCCCCCEEEEecC
Confidence 24589999999999998888889999874
No 80
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.39 E-value=0.00032 Score=59.87 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=34.2
Q ss_pred hcCCCEEEEEEEEEECCeEEEEE-CCEEEEEecccc-cccc
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRV 332 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel-~~~i 332 (514)
++.|+.++++|..+.++|+||++ ++++||||.|++ +.++
T Consensus 59 l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 59 PQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred CCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 35899999999999999999999 579999999999 5443
No 81
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.30 E-value=0.00068 Score=75.35 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=56.6
Q ss_pred hcCCC--EEEEEEEEEECCeEEEEE--CCEEEEEeccccc---cccC----------ChhhHhhhcCCEEEEEEEEEeCC
Q 010232 294 KQLNE--PIEVKFTEWNTGGLLTRI--EGLRAFLPKAELL---SRVN----------NFTELKEKVGRRMYVQITRINED 356 (514)
Q Consensus 294 ~k~Ge--iV~GkV~~v~~~G~fVdi--~Gi~gFVP~sel~---~~i~----------~~~el~~~VGq~V~vkVl~vD~e 356 (514)
.+.|+ .++|+|++++++|+||.+ .|++||||.+++. .++. +... ...+|++|+|+|.++|..
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~-~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET-VYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEE-EEETTCEEEEEEEEEETT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCC-EeCCCCEEEEEEEEEeCC
Confidence 36899 999999999999999999 4799999999984 2210 1111 136999999999999999
Q ss_pred CCceEeeh
Q 010232 357 TNDLILSE 364 (514)
Q Consensus 357 ~~rIiLS~ 364 (514)
+++|.++.
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99998874
No 82
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.01 E-value=0.0011 Score=71.65 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred cCCCEEEEEEEEEECC--eEEEEEC-CEEEEEecccc-cccc---------CChhhHhhhcCCEEEEEEEEEeCCCCceE
Q 010232 295 QLNEPIEVKFTEWNTG--GLLTRIE-GLRAFLPKAEL-LSRV---------NNFTELKEKVGRRMYVQITRINEDTNDLI 361 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~--G~fVdi~-Gi~gFVP~sel-~~~i---------~~~~el~~~VGq~V~vkVl~vD~e~~rIi 361 (514)
..|.++.|+|+++.++ |+||+++ |..||+|++++ +.++ .+..+.. ++||.|.|.|++....++...
T Consensus 44 ~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~l-k~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 44 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVL-REGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTC-CTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhc-cCCCEEEEEEEeeccccCCce
Confidence 5899999999999999 9999997 68999999999 4332 2233433 689999999998776666666
Q ss_pred eehh
Q 010232 362 LSER 365 (514)
Q Consensus 362 LS~K 365 (514)
||..
T Consensus 123 lTt~ 126 (517)
T 2bx2_L 123 LTTF 126 (517)
T ss_dssp EESS
T ss_pred EEee
Confidence 6664
No 83
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.97 E-value=0.0013 Score=66.32 Aligned_cols=71 Identities=10% Similarity=-0.000 Sum_probs=63.3
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSl 444 (514)
-.++|++|-|+|+++....+.|+|.. -..|+||.+++. ...++.+..|++||-|.|+|++++.+..+.||+
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECC-CceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 46999999999999999999999998 588999999876 345678889999999999999987777899998
No 84
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=96.92 E-value=0.001 Score=63.51 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=45.0
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEecccc-cccc-------------------CChhhHhhhcCCEEEEEEEEEe
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRV-------------------NNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel-~~~i-------------------~~~~el~~~VGq~V~vkVl~vD 354 (514)
..|+++.|+|++++++|+||.++.++|+++.+++ ..+. ++. .....+|+.|+++|.++|
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~-~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGT-ELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCE-EEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccC-CcEEcCCCEEEEEEEEEE
Confidence 5899999999999999999999778999999988 3321 111 112256777777777766
Q ss_pred CC
Q 010232 355 ED 356 (514)
Q Consensus 355 ~e 356 (514)
..
T Consensus 159 ~~ 160 (203)
T 3ayh_B 159 FV 160 (203)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 85
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.83 E-value=0.0037 Score=62.95 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=59.4
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|-+++||+|.|+|+++....+.|||+....|+||.+.+....
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gat-------------------------------------- 164 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGAT-------------------------------------- 164 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCS--------------------------------------
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcch--------------------------------------
Confidence 689999999999999999999999998888998877753110
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEe
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLST 278 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~ 278 (514)
.+-.+.|++||.|.|+|+..+.++.+.||.
T Consensus 165 -k~~r~~f~~GDlV~ArV~s~~~~~~~eLsc 194 (289)
T 2nn6_G 165 -KRNRPNVQVGDLIYGQFVVANKDMEPEMVC 194 (289)
T ss_dssp -SCSSSSSCTTCEEEEEEEECCTTSCCEEEC
T ss_pred -hhhhhhcCCCCEEEEEEEEcCCCCceEEEe
Confidence 011456899999999999888888888886
No 86
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0021 Score=62.18 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=49.4
Q ss_pred cCCCEEEEEEEEEECCeEEEEE-CCEEEEEecccc-ccccC-------------ChhhHhhhcCCEEEEEEEEEeCCCCc
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSRVN-------------NFTELKEKVGRRMYVQITRINEDTND 359 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel-~~~i~-------------~~~el~~~VGq~V~vkVl~vD~e~~r 359 (514)
..|+++.|+|++++++|+||.+ +.++|+++.+++ ..+.. .-......+|+.|+++|.++|...+.
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~~ 159 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVK 159 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccCC
Confidence 5899999999999999999999 557999999988 32210 00112236899999999999876543
No 87
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.59 E-value=0.0035 Score=70.94 Aligned_cols=71 Identities=10% Similarity=0.059 Sum_probs=48.8
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC--CEEEEEeccccc---ccc-----------CCh---hhHhhhcCCEEEEEEEEEeC
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAELL---SRV-----------NNF---TELKEKVGRRMYVQITRINE 355 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~--Gi~gFVP~sel~---~~i-----------~~~---~el~~~VGq~V~vkVl~vD~ 355 (514)
...+.+.|+|+++.++|+||.+. |++|+||++++. .++ .+. ......+|++|+|+|+.+|.
T Consensus 668 ~~~~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~ 747 (760)
T 2vnu_D 668 NNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMD 747 (760)
T ss_dssp TCCSEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC----
T ss_pred cCceEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEEC
Confidence 34489999999999999999994 799999999983 210 111 01123799999999999998
Q ss_pred C---CCceEeehh
Q 010232 356 D---TNDLILSER 365 (514)
Q Consensus 356 e---~~rIiLS~K 365 (514)
+ +++|.+|+|
T Consensus 748 ~~~~~~kI~lslk 760 (760)
T 2vnu_D 748 PITSKRKAELLLK 760 (760)
T ss_dssp ----CCEEEC---
T ss_pred ccccCCcEEEEeC
Confidence 7 689999875
No 88
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.0044 Score=71.89 Aligned_cols=70 Identities=10% Similarity=0.075 Sum_probs=54.8
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC--CEEEEEeccccc--c-c---------c--CC----hhhHhhhcCCEEEEEEEEEe
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAELL--S-R---------V--NN----FTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~--Gi~gFVP~sel~--~-~---------i--~~----~~el~~~VGq~V~vkVl~vD 354 (514)
..|+...|+|+++.++|+||.+. |++|+||+++|. . + + .+ ... ...+|++|+|+|..+|
T Consensus 885 ~~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~-~~~lGD~V~VkV~~vd 963 (977)
T 2wp8_J 885 NNESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPR-DVYVFDKVEVQVRSVM 963 (977)
T ss_dssp HTTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCE-EEETTCEEEEEECCCC
T ss_pred ccceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCc-EEccCCEEEEEEEEEc
Confidence 34999999999999999999994 799999999984 1 1 0 11 112 2379999999999998
Q ss_pred CC---CCceEeehh
Q 010232 355 ED---TNDLILSER 365 (514)
Q Consensus 355 ~e---~~rIiLS~K 365 (514)
.. +++|.||+|
T Consensus 964 ~~~~~~~kI~Lslk 977 (977)
T 2wp8_J 964 DPITSKRKAELLLK 977 (977)
T ss_dssp CSSSCCCCCCEEEC
T ss_pred CcccCCCceEEEeC
Confidence 74 378988875
No 89
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=91.13 E-value=0.38 Score=51.33 Aligned_cols=59 Identities=10% Similarity=0.074 Sum_probs=45.8
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEE
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSI 444 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSl 444 (514)
-++|+.++|.|.. +.+ ..|+||++++... ......|++||+|+|+|.++| .+++|.+..
T Consensus 401 ~~~g~~f~g~vv~---------l~~--~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 401 AQPERVWDAVVVD---------RRG--AQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp TCTTCCEEEEEEE---------EET--TEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred hCCCCEEEEEEEE---------EeC--cEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 4689999998754 333 3788888888754 223457999999999999999 888998776
No 90
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=90.26 E-value=0.71 Score=38.98 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=48.6
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc-----cC-cccccCCCCEEEEE
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-----TS-VSDLLNEGERVKVL 430 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v-----~~-~~~~~kvGd~Vkvk 430 (514)
...|+.+.+.|.++.+.++-|.+.+ |..+.|+.+.|.|.+- .. +++.+++||.|.|+
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~-g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKN-GETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETT-SCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcC-CCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 4458899999999999999999977 6788899999999852 34 66789999999987
No 91
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=87.10 E-value=1.5 Score=36.53 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=47.5
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCC-ceEEEEEee-ccccccccCcccccCCCCEEEEEEEEEe
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHIS-NMSRTRVTSVSDLLNEGERVKVLVVKSM 435 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh~S-els~~~v~~~~~~~kvGd~VkvkVi~vd 435 (514)
++.+|++.+|+|. +.++-.+|.+.++ |.++++-.. ++-.++..++++.+ +|.+|+|+|+.+|
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD 92 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRAD 92 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEEC
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEec
Confidence 6899999999887 5677778999876 788887432 23344566666666 7999999999876
No 92
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=85.20 E-value=1.7 Score=41.52 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=42.9
Q ss_pred cCCCEEEEEEEEEECCeEEEEE-CCEEEEEeccccccc---cCC--------h---hhHhhhcCCEEEEEEEEEeCCCC
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSR---VNN--------F---TELKEKVGRRMYVQITRINEDTN 358 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel~~~---i~~--------~---~el~~~VGq~V~vkVl~vD~e~~ 358 (514)
..|+++.|+|..+++.|+-+-+ +-+.+|||...+... ..+ + .+. .+|++|+++|..++..++
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~--~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGE--PIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCC--BCCSEEEEEEEEEECCSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCC--CCCCEEEEEEEEEEecCC
Confidence 4899999999999998777644 447899999988211 110 0 111 368888888888775443
No 93
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=84.99 E-value=2.2 Score=40.70 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=47.6
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcc------------cccCCCCEEEEEEEEEeCCCe
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVS------------DLLNEGERVKVLVVKSMFPDK 439 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~------------~~~kvGd~VkvkVi~vde~~r 439 (514)
...+|+++.|+|+.+++.|+.+.+.+ =...+|+...|...+.-++. +--++|+.|+++|..++.++.
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G-~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHD-AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETT-TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeC-CEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 46899999999999999777765544 36789999888533211111 112469999999999875443
No 94
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=82.33 E-value=28 Score=32.85 Aligned_cols=171 Identities=13% Similarity=0.074 Sum_probs=99.5
Q ss_pred hchhccccCCCCCCEEEEEEEEE-eCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecc
Q 010232 161 DKVSVEYYEPKPGDFVIGVVVSG-NENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDD 239 (514)
Q Consensus 161 ~~~~~~~~~ik~GdiV~G~Vv~v-~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~ 239 (514)
..++.++-.+.+|+.+...|+.+ +++.+||.+-... . + ..+..+.. ...++.
T Consensus 4 ~~l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~-~------~-----~~L~~L~~----~l~~~~----------- 56 (226)
T 4b9x_A 4 EALEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDD-A------L-----EKLDDLNQ----SLADYC----------- 56 (226)
T ss_dssp --CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTT-H------H-----HHHHHHHH----HHHHHT-----------
T ss_pred cceeeEEEEcCCCCEEEEEEEEEeCCCEEEEEEcCCc-h------H-----HHHHHHHH----HHHHHH-----------
Confidence 45666778899999999999999 4567889863210 0 0 01111111 111110
Q ss_pred ccccccCCCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhhHHHhhhcCCCEEEEEEEEEECCe-EEEEE--
Q 010232 240 DAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG-LLTRI-- 316 (514)
Q Consensus 240 d~~~l~~~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~~~~~~w~~l~~~~k~GeiV~GkV~~v~~~G-~fVdi-- 316 (514)
.........+++|+..-|+. . ..|....|+|.++...| +-|.+
T Consensus 57 ------~~~~~~~~~~~~G~~c~a~~---~-------------------------~d~~WyRa~V~~~~~~~~~~V~~vD 102 (226)
T 4b9x_A 57 ------AQKPPNGFKAEIGRPCCAFF---S-------------------------GDGNWYRALVKEILPSGNVKVHFVD 102 (226)
T ss_dssp ------SSSCC--CCCCTTCEEEEEE---T-------------------------TTTEEEEEEEEEECSSSEEEEECTT
T ss_pred ------hcCCCCCCCCCCCCEEEEEE---C-------------------------CCCeEEEEEEEEECCCCeEEEEEEe
Confidence 00000122356777654431 0 24678889999987665 44544
Q ss_pred CCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhhhccCCCCceEEEEEEEEecceEEEEEC
Q 010232 317 EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIG 396 (514)
Q Consensus 317 ~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~~~~l~~G~iV~G~V~~I~~~GaFV~I~ 396 (514)
-|....+|.+++.. + +.++.....+-++|++..+.+.++. -|........++-.|..+.++|.++...++.|++.
T Consensus 103 yGn~~~v~~~~l~~-l--~~~f~~lP~qA~~c~L~~v~p~~~~--w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 103 YGNVEEVTTDQLQA-I--LPQFLLLPFQGMQCWLVDIQPPNKH--WTKEATARFQACVVGLKLQARVVEITANGVGVELT 177 (226)
T ss_dssp TCCEEEEEGGGEEC-C--CGGGSSSCBCCEEEEESSEECSSSS--CCHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE
T ss_pred cCCEEEEEHHHhcc-C--hHHHcccccceEEEEEecEECCCCC--CCHHHHHHHHHHHCCCeEEEEEEEEeCCeEEEEEE
Confidence 37788899998831 1 1223335788899999887664432 11111111234567888999999999988888875
Q ss_pred C
Q 010232 397 D 397 (514)
Q Consensus 397 ~ 397 (514)
+
T Consensus 178 d 178 (226)
T 4b9x_A 178 D 178 (226)
T ss_dssp E
T ss_pred E
Confidence 3
No 95
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=81.45 E-value=15 Score=30.12 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCCCceEEEEEEEEecceE-EEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCC-Ce-EEEEEecC
Q 010232 373 LREGTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DK-ISLSIADL 447 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~Ga-FV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~-~r-I~LSlK~l 447 (514)
+...+...|+|+... .|. ||.-.+.+-+-|+|++.|... ...++.||+|...+.. .++ +| -...++.+
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~-~~k~Gk~~A~~V~~~ 83 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS-DRRTGKPIAVKLVKI 83 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE-CSSSCCEEEEEEEES
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE-CCCCCCcEEEEEEEC
Confidence 344567899999985 443 666655248999999999743 2568899999998864 344 53 44445444
No 96
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=81.34 E-value=13 Score=29.39 Aligned_cols=61 Identities=11% Similarity=0.265 Sum_probs=41.6
Q ss_pred eEEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 378 LLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 378 iV~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
...|+|+...+ || |+.-.+.+-. |+|+|.|.... .++.||+|...+.. .+++.-...++.+
T Consensus 2 ~~~G~Vkwfn~~KGfG-FI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~-g~kG~~A~~V~~~ 65 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFG-FIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT-NNKGLSAYAVKVV 65 (74)
T ss_dssp CEEEEEEEEETTTTEE-EEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE-CSSSEEEEEEEEC
T ss_pred CcceEEEEEECCCCeE-EEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe-CCCCceeEEEEeC
Confidence 36799998854 66 5555442456 99999997432 68999999998863 4566555555443
No 97
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=78.87 E-value=3.6 Score=33.38 Aligned_cols=61 Identities=23% Similarity=0.222 Sum_probs=44.0
Q ss_pred ceEEEEEEEEecceEE-EEECCCceEEEEEeeccccc-cccCcccccCCCCEEEEEEEEEe-CCCeEEEE
Q 010232 377 TLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRT-RVTSVSDLLNEGERVKVLVVKSM-FPDKISLS 443 (514)
Q Consensus 377 ~iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Sels~~-~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LS 443 (514)
-.+.|+|.+..+.|.| |.+.+ |..-++|++--... ++ .+.+||.|.+.+...+ .+++|...
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK~Rk~~I-----~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELEN-GHKVLAHISGKMRQHYI-----RILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETT-SCEEEEEECHHHHHTTC-----CCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcceecCCc-----cCCCCCEEEEEECccCCCcEEEEEE
Confidence 3478999999987775 88887 77788888754322 22 3778999999876544 56677654
No 98
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=71.57 E-value=14 Score=29.28 Aligned_cols=62 Identities=23% Similarity=0.192 Sum_probs=43.2
Q ss_pred EEEEEEEec---ceEEEEECCCceEEEEEeeccc-cccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCc
Q 010232 380 EGTVKKIYP---YGAQIRIGDSNRSGLLHISNMS-RTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLE 448 (514)
Q Consensus 380 ~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels-~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l~ 448 (514)
.|+|+...+ || |+.-.+ |-+-|+|.|.|. .... ..++.||+|...+.. .+++.-...++.++
T Consensus 2 ~G~Vkwfn~~KGfG-FI~~~d-G~DvFvH~s~i~~~~g~----~~l~~G~~V~F~~~~-g~kG~~A~~V~~~~ 67 (74)
T 2kcm_A 2 KGKVVSYLAAKKYG-FIQGDD-GESYFLHFSELLDKKDE----GKLVKGSMVHFDPTP-TPKGLAAKAISLPL 67 (74)
T ss_dssp EEEEEEEETTTTEE-EEEETT-SCEECCCGGGSSCSGGG----TTCCTTSEEEEEEEC-TTTSCEEEEEECCS
T ss_pred CEEEEEEECCCCEE-EEecCC-CceEEEEhhhcccCCCC----CCCCCCCEEEEEEEE-CCCCceeEEEEEcC
Confidence 688888854 56 666666 689999999996 3321 458899999998852 35666555555444
No 99
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=70.81 E-value=33 Score=26.21 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=38.3
Q ss_pred EEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCC
Q 010232 379 LEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPD 438 (514)
Q Consensus 379 V~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~ 438 (514)
..|+|+...+ || |+.-.+ |-+-|+|.|.+.... ...+..||+|...+.. .+++
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~-g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~-~~kG 57 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYG-FIEVEG-GSDVFVHFTAIQGEG----FKTLEEGQEVSFEIVQ-GNRG 57 (66)
T ss_dssp EEEEEEEEETTTTEE-EEEETT-EEEEEEEGGGBCSSS----CCCCCTTCEEEEEEEE-ETTE
T ss_pred CceEEEEEECCCCeE-EEecCC-CccEEEEHHHccccC----CCCCCCCCEEEEEEEE-CCCC
Confidence 3689998864 55 666666 689999999997432 1348899999998854 3444
No 100
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=70.68 E-value=7.8 Score=31.78 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=40.1
Q ss_pred CCCceEEEEEEEEec-ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 374 REGTLLEGTVKKIYP-YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~-~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
..++...|+|+...+ || |+.-.+.+-+-|+|+|.|... ...++.||+|...+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfG-FI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFG-FIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEE-EEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCcc-EEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 357889999999874 44 666554258999999999743 256889999998774
No 101
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=70.08 E-value=23 Score=27.78 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=40.7
Q ss_pred EEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeC--CCeEEEEEe
Q 010232 379 LEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF--PDKISLSIA 445 (514)
Q Consensus 379 V~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde--~~rI~LSlK 445 (514)
..|+|+...+ || |+.-.+ |-+-|+|.|.|..... ..+..||+|...+.. .+ ++.-...++
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~-g~dvFvH~s~i~~~g~----~~l~~G~~V~f~~~~-~~~~kG~~A~~V~ 66 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYG-FIEREG-DTDVFVHYTAINAKGF----RTLNEGDIVTFDVEP-GRNGKGPQAVNVT 66 (73)
T ss_dssp EEEEEEEEETTTTEE-EEECTT-SCCEEEEGGGBCSSSC----SSCCTTCEEEEEEEC-CSCCSSSEEEEEE
T ss_pred CCEEEEEEECCCCEE-EEecCC-CCcEEEEhhhccccCC----CCCCCCCEEEEEEEE-CCCCCCCEEEEEE
Confidence 3689998864 55 665655 6799999999974321 358899999998853 34 444444443
No 102
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=70.02 E-value=14 Score=30.24 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCCEEEEEEEEEECC-eEEEEECC-EEEEEeccccccccCChhhHhhhcCCEEEEEEEE
Q 010232 296 LNEPIEVKFTEWNTG-GLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~-G~fVdi~G-i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
..+...|+|+..+++ |.+..-+| -+.|+|++.+....+ .+ ..||+|.+.+..
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~~~---~L--~~G~~V~F~v~~ 68 (89)
T 1wfq_A 15 AALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQ---DL--KVGDDVEFEVSS 68 (89)
T ss_dssp CCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSCTT---TC--CTTCCEEEEEEE
T ss_pred cccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCccC---CC--CCCCEEEEEEEE
Confidence 446789999999864 66665554 899999999943222 23 489999999874
No 103
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=69.88 E-value=21 Score=28.51 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=40.5
Q ss_pred ceEEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCe
Q 010232 377 TLLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439 (514)
Q Consensus 377 ~iV~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~r 439 (514)
....|+|+...+ || |+.-.+.+-+-|+|+|.|....-..--..++.||+|...+.. .++++
T Consensus 7 ~~~~G~Vkwfn~~kGfG-FI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~-~~kG~ 70 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYG-FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE-GEKGA 70 (79)
T ss_dssp EEEEEEEEEEETTTTEE-EEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE-CSSSE
T ss_pred cccceEEEEEECCCCcE-EEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE-CCCCc
Confidence 457899999864 66 444443258999999999743111112458899999998864 35554
No 104
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=69.60 E-value=19 Score=29.97 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=40.4
Q ss_pred cCCCEEEEEEEEEECCeEEEEE---CCEEEEEecc-cc-ccccCChhhHhhhcCCEEEEEEEEEeC
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKA-EL-LSRVNNFTELKEKVGRRMYVQITRINE 355 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi---~Gi~gFVP~s-el-~~~i~~~~el~~~VGq~V~vkVl~vD~ 355 (514)
..|++.+|.|. +.++-+.|.+ .|++|++--. .+ .+++.+.++- .+|..|+++|+++|.
T Consensus 31 ~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkk--LVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 31 SPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER--LVGRVIKTRVVRADG 93 (102)
T ss_dssp CSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH--HTTCEEEEEEEEECS
T ss_pred CCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHH--hcCceEEEEEEEecc
Confidence 48888888775 4455566777 3788887633 22 3445555543 599999999999985
No 105
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=69.42 E-value=11 Score=31.35 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=38.2
Q ss_pred CceEEEEEEEEecceE-EEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 376 GTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 376 G~iV~G~V~~I~~~Ga-FV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
.....|+|+.. ..|. |+.-.+.+-+-|+|+|.|... ...++.||+|...+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 56688999988 5444 666554247999999999743 256899999999884
No 106
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=68.18 E-value=30 Score=26.60 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=40.4
Q ss_pred EEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEE
Q 010232 379 LEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444 (514)
Q Consensus 379 V~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSl 444 (514)
..|+|+...+ || |+.-.+.+-+-|+|.|.+...- -..++.||+|...+.. .++++-...+
T Consensus 2 ~~G~Vk~fn~~kGfG-FI~~~~gg~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~-~~kG~~A~~V 64 (67)
T 3cam_A 2 ATGIVKWFNDAKGFG-FITPDEGGEDLFAHFSAINMEG----FKTLKEGQRVSFDVTT-GPKGKQAANI 64 (67)
T ss_dssp EEEEEEEEETTTTEE-EEEETTSCCCEEEEGGGBCGGG----GSSCCTTCEEEEEEEE-ETTEEEEEEE
T ss_pred CCEEEEEEECCCCeE-EEecCCCCccEEEEHHHccccC----CCCCCCCCEEEEEEEE-CCCCccceEE
Confidence 3689998854 66 5555432579999999996431 1458899999998864 3555544433
No 107
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=68.11 E-value=33 Score=26.72 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=39.4
Q ss_pred eEEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCe
Q 010232 378 LLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439 (514)
Q Consensus 378 iV~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~r 439 (514)
...|+|+...+ || |+.-.+.+-+-|+|.|.+.... ...++.||+|...+.. .+++.
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~-~~kG~ 63 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFEITN-GAKGP 63 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCSS----CCCCCTTCEEEEEEEE-ETTEE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHccccc----CcCCCCCCEEEEEEEE-CCCCC
Confidence 46799999864 66 5555542478999999997432 2358899999998864 34443
No 108
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=65.51 E-value=8.1 Score=31.70 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=38.7
Q ss_pred CCCEEEEEEEEEECC-eEEEEEC-CEEEEEeccccccccCChhhHhhhcCCEEEEEEE
Q 010232 296 LNEPIEVKFTEWNTG-GLLTRIE-GLRAFLPKAELLSRVNNFTELKEKVGRRMYVQIT 351 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~-G~fVdi~-Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl 351 (514)
.++...|+|+.++++ |.+..-+ |-+.|+|++.+....+. + ..||+|.+.+.
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~~~~---L--~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDS---L--ELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSCTTT---C--CTTCEEEECCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccccCc---C--CCCCEEEEEEE
Confidence 578899999999874 6666555 48999999999433322 3 48999998875
No 109
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=63.93 E-value=21 Score=27.30 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=35.7
Q ss_pred EEEEEEEEEC---CeEEEEECCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEE
Q 010232 300 IEVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 300 V~GkV~~v~~---~G~fVdi~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
..|+|+..+. +|.+..-+|-+.|+|.+.+. ...+. + ..|++|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKT---L--EEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCC---C--CTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccCCCC---C--CCCCEEEEEEEE
Confidence 3799999985 47776656689999999994 22222 2 489999998864
No 110
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=63.77 E-value=18 Score=31.90 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=40.6
Q ss_pred CCCceEEEEEEEEecceEEEEECCC-ceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 374 REGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
..|.-++|+|+.|...+++|.+.+. ...--+|.+++.--.-......|.+||+|.|.-.
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSR 72 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEEC
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEec
Confidence 3489999999999999999999762 1234677777643222222356899999999764
No 111
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=63.16 E-value=92 Score=28.56 Aligned_cols=170 Identities=13% Similarity=0.060 Sum_probs=98.8
Q ss_pred hchhccccCCCCCCEEEEEEEEEe-CCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecc
Q 010232 161 DKVSVEYYEPKPGDFVIGVVVSGN-ENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDD 239 (514)
Q Consensus 161 ~~~~~~~~~ik~GdiV~G~Vv~v~-~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~ 239 (514)
..++.++-++.+|+.+...|+.+. ++.+||.+-... . . ..+..+..+ ..++..
T Consensus 4 ~~l~~~~~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~-~------~-----~~l~~L~~~----l~~~~~---------- 57 (201)
T 4b9w_A 4 EALEWTWVEFTVDETVDVVVCMMYSPGEFYCHFLKDD-A------L-----EKLDDLNQS----LADYCA---------- 57 (201)
T ss_dssp --CCCCBCCCCTTCEEEEEEEEEEETTEEEEEECCTT-H------H-----HHHHHHHHH----HHHHHH----------
T ss_pred CcceeEEEEcCCCCEEEEEEEEEeCCCEEEEEECCCc-h------H-----HHHHHHHHH----HHHHHh----------
Confidence 345667778999999999999994 567888763210 0 0 011111111 111110
Q ss_pred ccccccCCCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhhHHHhhhcCCCEEEEEEEEEECCe-EEEEE--
Q 010232 240 DAIAMSGGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG-LLTRI-- 316 (514)
Q Consensus 240 d~~~l~~~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~~~~~~w~~l~~~~k~GeiV~GkV~~v~~~G-~fVdi-- 316 (514)
. .......+++|+..-|+. . ..|....|+|.++.+.+ +-|.+
T Consensus 58 ------~-~~~~~~~~~~G~~c~a~~---~-------------------------~d~~wyRa~V~~~~~~~~~~V~~vD 102 (201)
T 4b9w_A 58 ------Q-KPPNGFKAEIGRPCCAFF---S-------------------------GDGNWYRALVKEILPSGNVKVHFVD 102 (201)
T ss_dssp ------S-SSCCCCCCCTTCEEEEEE---T-------------------------TTTEEEEEEEEEECTTSCEEEEETT
T ss_pred ------c-CCCCCCCCCCCCEEEEEE---C-------------------------CCCeEEEEEEEEECCCCeEEEEEEc
Confidence 0 000122356777654431 1 24667889999987665 44555
Q ss_pred CCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhhhccCCCCceEEEEEEEEecceEEEEEC
Q 010232 317 EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTLLEGTVKKIYPYGAQIRIG 396 (514)
Q Consensus 317 ~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~~~~l~~G~iV~G~V~~I~~~GaFV~I~ 396 (514)
-|....+|.+++.. + +.++.....+-++|++..+.+.++. -|........++-.|..+.++|.++...++.|.+.
T Consensus 103 yG~~~~v~~~~l~~-l--~~~f~~lP~qA~~c~L~~v~p~~~~--w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~ 177 (201)
T 4b9w_A 103 YGNVEEVTTDQLQA-I--LPQFLLLPFQGMQCWLVDIQPPNKH--WTKEATARFQACVVGLKLQARVVEITANGVGVELT 177 (201)
T ss_dssp TCCEEEECGGGEEE-C--CGGGGSSCBCCEEEEESSEECSSSS--CCHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEEEHHHhcc-C--hHhHcccchhhEEEEEcCEEcCCCC--CCHHHHHHHHHHHCCCEEEEEEEEEeCCEEEEEEE
Confidence 27788899998831 1 1223335788899999877654432 12111111224556888999999999888888774
No 112
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=61.42 E-value=16 Score=28.15 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=37.3
Q ss_pred EEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCe
Q 010232 380 EGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439 (514)
Q Consensus 380 ~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~r 439 (514)
.|+|+...+ || |+.-.+ |-+-|+|.|.+...- -..++.||+|...+.. .+++.
T Consensus 2 ~G~Vk~fn~~kGfG-FI~~~~-g~dvFvH~s~i~~~g----~~~l~~G~~V~f~~~~-~~~G~ 57 (66)
T 1g6p_A 2 RGKVKWFDSKKGYG-FITKDE-GGDVFVHWSAIEMEG----FKTLKEGQVVEFEIQE-GKKGP 57 (66)
T ss_dssp CEEEEEEETTTTEE-EEEETT-SCBCBBCSSSSCCSS----CCCCCSSSEEEEEEEC-SSSCC
T ss_pred cEEEEEEECCCCEE-EEecCC-CceEEEEhHHccccC----CCCCCCCCEEEEEEEE-CCCCC
Confidence 588888864 56 565665 688999999997432 1458899999988753 34443
No 113
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=59.25 E-value=31 Score=30.93 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=49.4
Q ss_pred CCCceEEEEEEEEecceEE-EEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEe
Q 010232 374 REGTLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIA 445 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK 445 (514)
.....+.|+|+...+.+.| |.+.+ |..-|+|++-=... .-.+..||.|.|-....+ .+++|..-++
T Consensus 28 p~ege~~g~V~e~lgn~~f~V~l~n-G~~~La~I~GKmRk-----~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~ 95 (143)
T 1d7q_A 28 KEDGQEYAQVIKMLGNGRLEAMCFD-GVKRLCHIRGKLRK-----KVWINTSDIILVGLRDYQDNKADVILKYN 95 (143)
T ss_dssp CCTTEEEEEEEEECSSSEEEEEETT-TEEEEEECCSGGGG-----SCCCCTTCEEEEECSSSSSSCCEEEEEEC
T ss_pred CCCCEEEEEEEEEcCCCEEEEEeCC-CCEEEEEeccccee-----eEEecCCCEEEEeeccCCCCeEEEEEEeC
Confidence 3445688999999999887 78888 89999998864332 344788999998875444 5677777664
No 114
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=58.42 E-value=42 Score=30.14 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=39.4
Q ss_pred CCCceEEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEE
Q 010232 374 REGTLLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVK 433 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~ 433 (514)
..|....|+|+.... || ||.-.+.+-+-|+|+|.|... ..+..||+|...|..
T Consensus 58 ~~g~m~~GtVKwFn~~KGfG-FI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHG-FITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCS 113 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEE-EEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEE
T ss_pred ccCCccceEEEEEeCCCCeE-EeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEe
Confidence 356778899998854 66 555544258999999999632 268999999998864
No 115
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=58.13 E-value=25 Score=27.41 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=36.4
Q ss_pred EEEEEEEEEEC---CeEEEEECC-EEEEEeccccc-cccCChhhHhhhcCCEEEEEEEE
Q 010232 299 PIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 299 iV~GkV~~v~~---~G~fVdi~G-i~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
...|+|+..+. +|.+..-+| -+.|+|.+.+. ...+. + ..|+.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKT---L--AEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCC---C--CTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcC---C--CCCCEEEEEEEE
Confidence 46899999985 477666555 79999999994 22222 2 489999999875
No 116
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=56.32 E-value=18 Score=38.43 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=38.5
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEee
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS 363 (514)
..|+...|.|+.+... .|+|+.+.+......... ..+|++|+|+|.++|..+++|.+.
T Consensus 402 ~~g~~f~g~vv~l~~~---------~glV~v~~l~~d~~~~~~--~~lGd~V~V~v~~vd~~~~~i~f~ 459 (469)
T 2r7d_A 402 QPERVWDAVVVDRRGA---------QATLLIPDLAFDVQVNTP--AAPGTALQVQFADIDLPQMRVRAR 459 (469)
T ss_dssp CTTCCEEEEEEEEETT---------EEEEEEGGGTEEEEEECC--CCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEEEeCc---------EEEEEECCCCeEEecCCc--CCCCCEEEEEEEEEccCCCEEEEE
Confidence 5799999988765433 455555555211111111 259999999999999998887654
No 117
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=55.49 E-value=29 Score=31.22 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=39.5
Q ss_pred CCCEEEEEEEEEEC---CeEEEEECC-EEEEEeccccccccCChhhHhhhcCCEEEEEEEE
Q 010232 296 LNEPIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 296 ~GeiV~GkV~~v~~---~G~fVdi~G-i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
.|....|+|+..+. +|++..-+| -+.|+|++.+... . .+ ..|+.|.+.|..
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~-~---~L--~eGq~V~Fev~~ 113 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE-Y---VP--VEGDEVTYKMCS 113 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS-B---CC--CTTCEEEEEEEE
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC-C---cC--CCCCEEEEEEEe
Confidence 68889999999985 577776655 7999999999422 1 22 489999999875
No 118
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=55.35 E-value=18 Score=28.37 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred EEEEEEEEEC---CeEEEEECCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEE
Q 010232 300 IEVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 300 V~GkV~~v~~---~G~fVdi~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
..|+|+..+. +|.+..-+|-+.|+|++.+. ..... + ..|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKGFRT---L--NEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSSCSS---C--CTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccCCCC---C--CCCCEEEEEEEE
Confidence 3799999985 47776656788999999994 22222 2 489999998864
No 119
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=55.11 E-value=39 Score=26.85 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=37.9
Q ss_pred CEEEEEEEEEEC---CeEEEEEC-CEEEEEeccccccc--cCChhhHhhhcCCEEEEEEEE
Q 010232 298 EPIEVKFTEWNT---GGLLTRIE-GLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 298 eiV~GkV~~v~~---~G~fVdi~-Gi~gFVP~sel~~~--i~~~~el~~~VGq~V~vkVl~ 352 (514)
....|+|+..+. +|.+..-+ |-+.|+|++.+... ....+.+ ..|+.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l--~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV--GDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSC--CSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccC--CCCCEEEEEEEE
Confidence 457899999985 47777665 58999999999421 1112223 489999999874
No 120
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=55.11 E-value=30 Score=30.88 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred CEEEEEEEEEEC---CeEEEEE--------CCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEEE
Q 010232 298 EPIEVKFTEWNT---GGLLTRI--------EGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITRI 353 (514)
Q Consensus 298 eiV~GkV~~v~~---~G~fVdi--------~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~v 353 (514)
...+|+|+..+. +|.+..- +|-+.|||++.|. ..++. + ..|+.|.+.|..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~---l--~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRS---L--KEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCC---C--CTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCcc---C--CCCCEEEEEEEEc
Confidence 356899999985 4777654 3579999999993 33333 3 4899999998753
No 121
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=54.89 E-value=29 Score=26.70 Aligned_cols=48 Identities=23% Similarity=0.238 Sum_probs=35.6
Q ss_pred EEEEEEEEEC---CeEEEEEC-CEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEE
Q 010232 300 IEVKFTEWNT---GGLLTRIE-GLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 300 V~GkV~~v~~---~G~fVdi~-Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
..|+|+..+. +|.+..-+ |-+.|+|++.+. ...+. + ..|+.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 54 (67)
T 3cam_A 2 ATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKT---L--KEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSS---C--CTTCEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCC---C--CCCCEEEEEEEE
Confidence 3799999985 47776655 589999999994 22222 2 489999999875
No 122
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=53.64 E-value=37 Score=28.16 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=42.2
Q ss_pred hhhcCCCEEEEEEEEEECCeEEEEE-CCEEEEEecccc-ccc--c---CC-hhhHhhhcCCEEEEE
Q 010232 292 QIKQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAEL-LSR--V---NN-FTELKEKVGRRMYVQ 349 (514)
Q Consensus 292 ~~~k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel-~~~--i---~~-~~el~~~VGq~V~vk 349 (514)
.....|..+.+.|+++.+.++.|.+ +|-.+.||.+.| |.+ + .. +.+.. .+|+.|.++
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l-~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRI-RPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSC-CTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccC-CCCCEEEEE
Confidence 3345688999999999999999999 567888999999 543 2 12 22322 678888876
No 123
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=53.02 E-value=43 Score=27.49 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=35.6
Q ss_pred CEEEEEEEEEEC---CeEEEEE--------CCEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEE
Q 010232 298 EPIEVKFTEWNT---GGLLTRI--------EGLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 298 eiV~GkV~~v~~---~G~fVdi--------~Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
...+|+|+..+. +|.+..- +|-+.|||++.+ ...++. + ..|+.|.+.|..
T Consensus 7 ~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~---L--~eG~~V~f~v~~ 68 (90)
T 3ulj_A 7 LRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRS---L--KEGEPVEFTFKK 68 (90)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCC---C--CTTCEEEEEEEE
T ss_pred cccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCc---c--CCCCEEEEEEEE
Confidence 356899999885 4777532 357899999999 333333 3 489999998875
No 124
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=50.89 E-value=31 Score=30.27 Aligned_cols=83 Identities=7% Similarity=-0.110 Sum_probs=54.0
Q ss_pred CCCEEEEEEEEEECCeEEEEECCE---EEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhhhcc
Q 010232 296 LNEPIEVKFTEWNTGGLLTRIEGL---RAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLN 372 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~G~fVdi~Gi---~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~~~~ 372 (514)
.|....|+|+.+.+.+++|.+++. .--+|++++.-......+..+.+|++|.|.-- .+.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~----~~d-------------- 75 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSR----ANE-------------- 75 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEEC----C----------------
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEec----CCC--------------
Confidence 689999999999999999999642 46889998832111112233479999988432 111
Q ss_pred CCCCceEEEEEEEEecceEEEEEC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIG 396 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~ 396 (514)
.++--=..|+|+.+...=++|+..
T Consensus 76 ~ep~gWw~a~I~~~kg~f~~V~y~ 99 (128)
T 3h8z_A 76 QEPCGWWLARVRMMKGDFYVIEYA 99 (128)
T ss_dssp -CCCEEEEEEEEEEETTEEEEEET
T ss_pred CCcCccEEEEEEEeeCCEEEEEEc
Confidence 123334678999998665666654
No 125
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=48.53 E-value=44 Score=31.43 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=39.0
Q ss_pred eEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe
Q 010232 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435 (514)
Q Consensus 378 iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd 435 (514)
.+.|+|..+.+..+.|++++.|+.-+++.+.++ ....+|+.+..++...-
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~--------~l~~~g~~v~l~~~~~v 53 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFY--------ELPEAGQEAIVFTHFVV 53 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHT--------TCCCTTSEEEEEEEEEE
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHH--------hcCCCCCeEEEEEEEEE
Confidence 478999999999999999976777666666554 22357999999988663
No 126
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=46.54 E-value=78 Score=24.00 Aligned_cols=46 Identities=28% Similarity=0.526 Sum_probs=34.7
Q ss_pred cCCCEEEEEEEEEECCeE-EEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEe
Q 010232 295 QLNEPIEVKFTEWNTGGL-LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~-fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD 354 (514)
+.|+.++++|.+....|- +..++|...|||.. .+|+++.++|....
T Consensus 12 ~~~~~~~~~I~~l~~~G~Gva~~~g~~vfV~~a--------------lPGE~V~v~i~k~k 58 (68)
T 1yez_A 12 EEGEVYDVTIQDIARQGDGIARIEGFVIFVPGT--------------KVGDEVRIKVERVL 58 (68)
T ss_dssp CTTEEEEEECCEEETTTEEEEEETTEEEEEESC--------------CTTCEEEEEEEEEC
T ss_pred CCCCEEEEEEEEcCCCccEEEEECCEEEECcCC--------------CCCCEEEEEEEEec
Confidence 467788888888876653 45667888899842 37999999999753
No 127
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.28 E-value=1.2e+02 Score=26.83 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=43.3
Q ss_pred ceEEEEEEEEec---ceEEEEE-------CCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEec
Q 010232 377 TLLEGTVKKIYP---YGAQIRI-------GDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIAD 446 (514)
Q Consensus 377 ~iV~G~V~~I~~---~GaFV~I-------~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~ 446 (514)
..+.|+|+-... ||.+..- .+ +-+-|+|+|.|....+ ..+..||.|...|.. .+++.-...+..
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~-g~DvFvH~s~i~~~g~----~~l~eG~~V~f~~~~-g~kG~~A~~V~~ 81 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDP-PVDVFVHQSKLHMEGF----RSLKEGEAVEFTFKK-SAKGLESIRVTG 81 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEE-EEEEEEEGGGBCSSSS----CCCCTTCEEEEEEEE-ETTEEEEEEEES
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCC-CccEEEEhHHhcccCC----ccCCCCCEEEEEEEE-ccccchhhcccc
Confidence 346799999854 6654432 13 6799999999964322 357899999998864 355554455543
Q ss_pred C
Q 010232 447 L 447 (514)
Q Consensus 447 l 447 (514)
.
T Consensus 82 p 82 (148)
T 3ts2_A 82 P 82 (148)
T ss_dssp G
T ss_pred c
Confidence 3
No 128
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=44.73 E-value=14 Score=28.42 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=34.7
Q ss_pred EEEEEEEEC---CeEEEEECCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEE
Q 010232 301 EVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 301 ~GkV~~v~~---~G~fVdi~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
+|+|+..+. +|.+..-+|-+.|+|.+.+. ..... + ..|++|.+.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g~~~---l--~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKT---L--KEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCC---C--CSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccCCCC---C--CCCCEEEEEEEE
Confidence 589999985 47776656789999999994 22232 2 489999998763
No 129
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=41.57 E-value=87 Score=23.99 Aligned_cols=46 Identities=28% Similarity=0.579 Sum_probs=32.6
Q ss_pred cCCCEEEEEEEEEECCe-EEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEe
Q 010232 295 QLNEPIEVKFTEWNTGG-LLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G-~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD 354 (514)
+.|+.++.+|.+....| -+..++|...|||.. .+|+++.++|.+..
T Consensus 14 ~~~~~~~v~I~~l~~~G~Gva~~~g~~vfV~~a--------------lPGE~V~v~i~k~k 60 (70)
T 1yvc_A 14 EAGKEYEVTIEDMGKGGDGIARIDGFVVFVPNA--------------EKGSVINVKVTAVK 60 (70)
T ss_dssp CTTCEEEEECCEECTTSCEEEEETTEEEEETTC--------------CTTCEEEEEEEEEC
T ss_pred cCCCEEEEEEEEcCCCccEEEEECCEEEEccCC--------------CCCCEEEEEEEEee
Confidence 45777777777776554 345567777888841 37999999999754
No 130
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=40.05 E-value=32 Score=27.15 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=35.3
Q ss_pred EEEEEEEEC---CeEEEEECCEEEEEeccccc-cc-cCChhhHhhhcCCEEEEEEE
Q 010232 301 EVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SR-VNNFTELKEKVGRRMYVQIT 351 (514)
Q Consensus 301 ~GkV~~v~~---~G~fVdi~Gi~gFVP~sel~-~~-i~~~~el~~~VGq~V~vkVl 351 (514)
.|+|+..+. +|.+..-+|-+.|++++.+. .. ++. + ..|++|.+.+.
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~---l--~~G~~V~F~~~ 52 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGK---L--VKGSMVHFDPT 52 (74)
T ss_dssp EEEEEEEETTTTEEEEEETTSCEECCCGGGSSCSGGGTT---C--CTTSEEEEEEE
T ss_pred CEEEEEEECCCCEEEEecCCCceEEEEhhhcccCCCCCC---C--CCCCEEEEEEE
Confidence 699999985 47777667789999999995 32 222 3 48999999886
No 131
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=39.87 E-value=76 Score=24.92 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=34.7
Q ss_pred EEEEEEEEEEC---CeEEEEECC-EEEEEeccccccccCChhhHhhhcCCEEEEEEEE
Q 010232 299 PIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 299 iV~GkV~~v~~---~G~fVdi~G-i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
...|+|+..+. +|.+..-+| -+ |++++.+...- .+ ..|++|.+.+..
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g----~l--~~G~~V~F~~~~ 52 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD----LI--KKDAAVTFEPTT 52 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG----GC--CTTCEEEEEEEE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC----CC--CCCCEEEEEEEe
Confidence 35899999985 477776655 56 99999994321 23 489999999874
No 132
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=39.23 E-value=39 Score=25.69 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEEEEEeCCeEEE-Ee-CCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDV-NV-GADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~V-dI-G~k~~G~Lp~sEl~p 207 (514)
.++.||+|. |+...+.|++. .. ..+..|++|.+.+.+
T Consensus 24 s~~~Gd~i~--v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~ 62 (65)
T 2lj0_A 24 ELRDGDIVD--VMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62 (65)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEETTTCCEEEEETTSEEE
T ss_pred CCCCCCEEE--EeEeCCCCEEEEEECCCCCEEEEehhHeEE
Confidence 688999985 77777777664 33 456789999988854
No 133
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=38.17 E-value=27 Score=28.98 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCCEEEEEEEEEEC-CeEEEEECC-EEEEEeccccccccCChhhHhhhcCCEEEEEEE
Q 010232 296 LNEPIEVKFTEWNT-GGLLTRIEG-LRAFLPKAELLSRVNNFTELKEKVGRRMYVQIT 351 (514)
Q Consensus 296 ~GeiV~GkV~~v~~-~G~fVdi~G-i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl 351 (514)
......|+|+...+ +|.+..-+| -+.|+|++.+....+. + ..|++|.+.+.
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~~~~---L--~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLET---L--QPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSCTTS---C--CSCCEEEEEEC
T ss_pred CCcceeEEEEEEeCCceEEecCCCCceEEEEehHhccccCC---C--CCCCEEEEEEE
Confidence 35678899998844 366655554 7999999999432222 3 48999999884
No 134
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.44 E-value=99 Score=26.35 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=44.9
Q ss_pred ceEEEEEEEEecceEE-EEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe--CCCeEEEEEe
Q 010232 377 TLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM--FPDKISLSIA 445 (514)
Q Consensus 377 ~iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd--e~~rI~LSlK 445 (514)
..+.|+|....+.+.| |.+.+ |..-|+|++-=... .-.++.||.|.|-....+ .+++|..-++
T Consensus 15 ge~~g~V~~~lgn~~f~V~l~n-G~~~la~i~GK~Rk-----~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~ 80 (111)
T 2dgy_A 15 QQQIVRVLRTPGNNLHEVETAQ-GQRFLVSMPSKYRK-----NIWIKRGDFLIVDPIEEGEKVKAEISFVLC 80 (111)
T ss_dssp SCEEEEEEECCSSSEEEEECTT-SCEEEEECCTTCCS-----CCCCCSSCEEEEEECSSCSSCCEEEEEECC
T ss_pred CeEEEEEEEeCCCCEEEEEeCC-CCEEEEEechhhcc-----cEEEcCCCEEEEEecccCCcceEEEEEEeC
Confidence 4577999999998887 77777 89999998764432 344788999998865433 2346655543
No 135
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=35.94 E-value=70 Score=23.33 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=28.4
Q ss_pred ceEEEEEEEEecceEEE----EECCCc-eEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 377 TLLEGTVKKIYPYGAQI----RIGDSN-RSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 377 ~iV~G~V~~I~~~GaFV----~I~~~g-i~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
..+.|+|.++...|..+ ++++ + +...+....+ . .-.+++|+.|.+.|.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~-~~l~a~it~~s~-----~--~l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKG-TELVAAITIDSV-----A--DLDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETT-EEEEEEEEHHHH-----H--HHTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCC-CEEEEEeCHHHH-----H--hCCCCCCCEEEEEEe
Confidence 46899999999887443 3333 2 1222222111 1 124889999998874
No 136
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=34.71 E-value=18 Score=29.78 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=36.1
Q ss_pred ceEEEEEEEEec-ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 377 TLLEGTVKKIYP-YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 377 ~iV~G~V~~I~~-~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
+...|+|+.... || |+.-.+.+-+-|+|+|.|... ..+++||+|...|.
T Consensus 7 ~r~~G~Vk~f~KGfG-FI~~~~gg~DvFvH~s~i~~~------~~L~~G~~V~F~v~ 56 (89)
T 1x65_A 7 GREMGVIAAMRDGFG-FIKCVDRDVRMFFHFSEILDG------NQLHIADEVEFTVV 56 (89)
T ss_dssp CCEEEEEEECCTTBC-EEEESSSSSCCCCBTTGGGGS------CCCCTTCCEEECCB
T ss_pred cceeEEEEEEeCCcc-eeecCCCCccEEEEhhhccCC------CCCCCCCEEEEEEE
Confidence 357899998852 45 666544257899999999731 56899999998775
No 137
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=34.31 E-value=1.6e+02 Score=22.86 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhhHHHhhhcCCCEEEEEEEEEEC--CeEEEEEC-CEEEEEecccc
Q 010232 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNT--GGLLTRIE-GLRAFLPKAEL 328 (514)
Q Consensus 252 ~~~~~vGd~V~v~Vl~~d~~grliLS~kk~~~~~~w~~l~~~~k~GeiV~GkV~~v~~--~G~fVdi~-Gi~gFVP~sel 328 (514)
+..+++|+.|.|+ | .-|....|+|++|++ +-++|.++ |..-.+...+|
T Consensus 11 ~~~f~vGddVLA~----------------------w-------tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi 61 (66)
T 2eqj_A 11 ACKFEEGQDVLAR----------------------W-------SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDI 61 (66)
T ss_dssp CCCSCTTCEEEEE----------------------C-------TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTE
T ss_pred cccccCCCEEEEE----------------------E-------ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecc
Confidence 4569999988665 2 268889999999996 56999994 68888877766
No 138
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=33.27 E-value=1.8e+02 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=21.5
Q ss_pred EEEEEEEEEeCCeEEEEeCC-ceeEEee
Q 010232 175 FVIGVVVSGNENKLDVNVGA-DLLGTML 201 (514)
Q Consensus 175 iV~G~Vv~v~~~Gv~VdIG~-k~~G~Lp 201 (514)
++.|+|+.+.+..+.||+++ +...++|
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~ 31 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMP 31 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECC
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcC
Confidence 68999999999999999853 4555544
No 139
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=32.25 E-value=84 Score=23.18 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=28.8
Q ss_pred ceEEEEEEEEecceEEE----EECC-CceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 377 TLLEGTVKKIYPYGAQI----RIGD-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 377 ~iV~G~V~~I~~~GaFV----~I~~-~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
..+.|+|.++.+.|..+ ++++ ..+...+...... .-.+++|+.|.+.+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~-------~l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVE-------ELGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-------HHTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHH-------HCCCCCCCEEEEEEe
Confidence 46899999999888443 3333 1123333222111 123889999998764
No 140
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=30.60 E-value=2.2e+02 Score=23.18 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=40.2
Q ss_pred eEEEEEEEEec---ceEEEE-------ECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEe
Q 010232 378 LLEGTVKKIYP---YGAQIR-------IGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445 (514)
Q Consensus 378 iV~G~V~~I~~---~GaFV~-------I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK 445 (514)
..+|+|+-... ||.+.. ..+ +-+-|+|.|.|...-+ ..|..||.|...|.. .+++.-...+.
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dg-g~DvFVH~s~i~~~g~----~~L~eG~~V~f~v~~-g~kG~~A~~Vt 79 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLEN-PVDVFVHQSKLYMEGF----RSLKEGEPVEFTFKK-SSKGFESLRVT 79 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEE-EEEEEEEGGGBCCSSS----CCCCTTCEEEEEEEE-ETTEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCC-CccEEEEeehhcccCC----CccCCCCEEEEEEEE-CCCCcEEEEEE
Confidence 45789988753 664432 123 5689999999964322 347889999998864 35554444443
No 141
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=30.13 E-value=71 Score=25.63 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=39.4
Q ss_pred CCEEEEEEEEEECCeEE-EEEC-CE--EEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEee
Q 010232 297 NEPIEVKFTEWNTGGLL-TRIE-GL--RAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILS 363 (514)
Q Consensus 297 GeiV~GkV~~v~~~G~f-Vdi~-Gi--~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS 363 (514)
--.++|+|++...+|.| |.++ |. .+-++-.--..++. -.+|+.|.+.+...|..+++|+.-
T Consensus 13 ~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~------Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 13 AIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIR------ILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp CSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCC------CCTTCEEEEEEETTEEEEEEEEEE
T ss_pred eEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCcc------CCCCCEEEEEECccCCCcEEEEEE
Confidence 34579999999977654 7774 63 44444222122222 159999999888777777777643
No 142
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=28.40 E-value=87 Score=22.49 Aligned_cols=34 Identities=18% Similarity=0.031 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl 205 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+
T Consensus 22 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv 56 (59)
T 2g6f_X 22 SFSKGDVIH--VTRVEEGGWWEGTH-NGRTGWFPSNYV 56 (59)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEE-TTEEEEEEGGGE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCcEEEEeHHHE
Confidence 578999986 6666566655 444 457899998776
No 143
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast collaboratory for structural genomics, secsg; 2.40A {Archaeoglobus fulgidus dsm 4304}
Probab=28.33 E-value=8.9 Score=36.82 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=28.1
Q ss_pred CCCCcccceeecCC------cccccc-cccccchhhHhHHhhhhhceeeecCCcccccccc
Q 010232 19 APPLSTCSFVQNGN------AKYPLQ-QSRKFHSFAASFRFLRSTHIVFCSQKDVFDDLSS 72 (514)
Q Consensus 19 ~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (514)
++..|+|.-++.-- -||.-+ -.++|.-|.-++.++++.+ +-+|++++|=.
T Consensus 65 s~~~s~~~~i~g~iFy~~h~~Ky~~~dfe~Ay~ef~~sr~~L~~i~----~lkdl~~~F~e 121 (246)
T 2ph7_A 65 SLHFSEKVKIGDVLFYHPHVIKPEKEDFEQAYFEYKQSKKFLDAFD----IMREVTDRFFE 121 (246)
T ss_dssp -CCCCEEEEETTEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTT
T ss_pred cccchheEEECCEEEEeccCCCCChHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHh
Confidence 56678885443211 122111 3567888888998887753 34566665543
No 144
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=28.00 E-value=84 Score=23.30 Aligned_cols=37 Identities=22% Similarity=-0.017 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p 207 (514)
.++.||+|. |+...+.|++.---.+..|++|...+..
T Consensus 21 sf~~Gd~i~--v~~~~~~~Ww~g~~~g~~G~fP~~yv~~ 57 (67)
T 2bzy_A 21 ALEVGDIVK--VTRMNINGQWEGEVNGRKGLFPFTHVKI 57 (67)
T ss_dssp CBCTTCEEE--EEEECSSSEEEEEETTEEEEEEGGGEEE
T ss_pred ccCCCCEEE--EEEecCCCeEEEEeCCcEEEEehHHeEE
Confidence 578999987 6666666655433245789999888743
No 145
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=33.63 E-value=13 Score=29.01 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=35.7
Q ss_pred EEEEEEEEEEC---CeEEEEEC-CEEEEEeccccccccCChhhHhhhcCCEEEEEEEE
Q 010232 299 PIEVKFTEWNT---GGLLTRIE-GLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 299 iV~GkV~~v~~---~G~fVdi~-Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
.++|+|+..+. +|.+..-+ |-+.|+|.+.+... ..+.+ ..|+.|.+.+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~--g~~~l--~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAA--GLHSL--EEGQDVIFDLEE 57 (70)
Confidence 46799998875 58777665 58999999999421 11223 489999998764
No 146
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=26.91 E-value=97 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=25.7
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~ 206 (514)
-.++.|+++. |+...+.+++.-.-.+..|++|.+.+.
T Consensus 18 Ls~~~Gd~i~--v~~~~~~~W~~g~~~g~~G~~P~~yv~ 54 (58)
T 4e6r_A 18 LSLVXGSRVT--VMEXCSDGWWRGSYNGQIGWFPSNYVL 54 (58)
T ss_dssp CCBCTTCEEE--EEEECTTSEEEEEETTEEEEEEGGGEE
T ss_pred eeEeCCCEEE--EeEcCCCCEEEEEECCcEEEEehHHEE
Confidence 3678999986 566666665543434578999988773
No 147
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=26.87 E-value=77 Score=22.69 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=24.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++ ... .+..|++|.+.+.
T Consensus 19 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 54 (58)
T 2bz8_A 19 TISVGEIIT--NIRKEDGGWWEGQI-NGRRGLFPDNFVR 54 (58)
T ss_dssp CBCTTCEEE--EEECCTTTEEEEEE-TTEEEEEEGGGEE
T ss_pred eECCCCEEE--EEEeCCCCEEEEEE-CCeEEEEehHHeE
Confidence 578999985 5565555655 444 4678999988874
No 148
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=26.04 E-value=1e+02 Score=22.89 Aligned_cols=37 Identities=16% Similarity=-0.029 Sum_probs=25.6
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p 207 (514)
.++.||+|. |+...+.|++.---.+..|++|...+..
T Consensus 26 s~~~Gd~i~--v~~~~~~gWw~g~~~g~~G~fP~~yv~~ 62 (67)
T 2eyx_A 26 ALEVGELVK--VTKINVSGQWEGECNGKRGHFPFTHVRL 62 (67)
T ss_dssp CBCSSEEEE--EEEECTTSEEEEEETTEEEEEEGGGBCC
T ss_pred ccCCCCEEE--EEEecCCCEEEEEECCCEEEEehHhEEE
Confidence 578999986 5666666655433245789999888743
No 149
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=26.04 E-value=94 Score=22.03 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeC-CceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVG-ADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG-~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.|++ .... .+..|++|.+.+.
T Consensus 19 s~~~Gd~i~--v~~~~~~gW~~g~~~~~g~~G~~P~~yv~ 56 (58)
T 1zuy_A 19 PLKKGDVIY--ITREEPSGWSLGKLLDGSKEGWVPTAYMK 56 (58)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEESSCSCEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEecCCCeEEEEECCCCCEEEecHHHEE
Confidence 578999986 5555556544 5554 2678999988763
No 150
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=25.88 E-value=84 Score=22.43 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+.
T Consensus 19 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 54 (58)
T 1uti_A 19 GFRSGEVVE--VLDSSNPSWWTGRL-HNKLGLFPANYVA 54 (58)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEECCCCEEEEEE-CCeEEEeeHHHeE
Confidence 578899985 5555555544 555 4678999988774
No 151
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=25.72 E-value=85 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=24.5
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+.
T Consensus 20 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 55 (58)
T 1sem_A 20 AFKRGDVIT--LINKDDPNWWEGQL-NNRRGIFPSNYVC 55 (58)
T ss_dssp CBCTTCEEE--EEECSSSSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCcEEEechHHeE
Confidence 578999986 5555555544 555 4678999988763
No 152
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=25.48 E-value=27 Score=27.90 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=35.4
Q ss_pred CEEEEEEEEEECC-eEEEEECC--EEEEEeccccccccCChhhHhhhcCCEEEEEEEE
Q 010232 298 EPIEVKFTEWNTG-GLLTRIEG--LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 298 eiV~GkV~~v~~~-G~fVdi~G--i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
....|+|..+.++ |.+..-+| -+.|+|++.+... .. + ..||+|.+.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~~g-~~---l--~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDG-IE---L--QAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCCSS-CC---C--CTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcCCC-Cc---C--CCCCEEEEEEEE
Confidence 4567899988764 76665534 7999999999522 22 3 489999998864
No 153
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=25.21 E-value=84 Score=22.47 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=24.7
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeC-CceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVG-ADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG-~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++ .... .+..|++|.+.+.
T Consensus 18 s~~~Gd~i~--v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~ 55 (58)
T 1jo8_A 18 TFVENDKII--NIEFVDDDWWLGELEKDGSKGLFPSNYVS 55 (58)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEETTTCCEEEEEGGGEE
T ss_pred ccCCCCEEE--EEEecCCCcEEEEECCCCCEEEechHHeE
Confidence 578899986 5555555655 4444 2678999988763
No 154
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=25.19 E-value=1.2e+02 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=26.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEe--CCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNV--GADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdI--G~k~~G~Lp~sEl~p 207 (514)
.++.||+|. |+...+.|++.-. ..+..|++|...+.+
T Consensus 24 s~~~Gd~i~--v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~ 62 (71)
T 2fpf_A 24 ELEVDDPLL--VELQAEDYWYEAYNMRTGARGVFPAYYAIE 62 (71)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEETTTTEEEEEEGGGEEE
T ss_pred cCcCCcEEE--EeEecCCCEEEEEECCCCCEEEeehHHEEE
Confidence 578999986 5566667766543 556889999888743
No 155
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=25.19 E-value=1.1e+02 Score=22.12 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl 205 (514)
.++.||++. |....+.+++ ... .+..|++|.+.+
T Consensus 22 s~~~Gd~i~--v~~~~~~~W~~g~~-~g~~G~~P~~yv 56 (60)
T 1w70_A 22 NFKAGDVIF--LLSRINKDWLEGTV-RGATGIFPLSFV 56 (60)
T ss_dssp CBCTTCEEE--EEEECSSSEEEEEE-TTEEEEEEGGGE
T ss_pred cCCCCCEEE--EEEeCCCCeEEEEE-CCCEEEechHHE
Confidence 578999986 5555555554 454 467899998876
No 156
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=25.13 E-value=2.2e+02 Score=21.55 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCcccCCCEEEEEEEEEcCCCcEEEEehHHHHHhhhhHHHhhhcCCCEEEEEEEEEECCe--EEEEE-CCEEEEEecccc
Q 010232 252 RPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGG--LLTRI-EGLRAFLPKAEL 328 (514)
Q Consensus 252 ~~~~~vGd~V~v~Vl~~d~~grliLS~kk~~~~~~w~~l~~~~k~GeiV~GkV~~v~~~G--~fVdi-~Gi~gFVP~sel 328 (514)
+..+.+|+.|-++-- -|...-|+|+++++.+ ++|.+ ++-.-.+...++
T Consensus 1 ~~~f~~GedVLarws-----------------------------DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi 51 (58)
T 4hcz_A 1 RPRLWEGQDVLARWT-----------------------------DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDI 51 (58)
T ss_dssp CCSCCTTCEEEEECT-----------------------------TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGE
T ss_pred CCccccCCEEEEEec-----------------------------CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHc
No 157
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=24.83 E-value=1.1e+02 Score=22.00 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl 205 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+
T Consensus 23 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv 57 (60)
T 2xmf_A 23 SFNANDIID--IIKEDPSGWWTGRL-RGKQGLFPNNYV 57 (60)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEE-TTEEEEEEGGGE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCEEEEEcHHHE
Confidence 578999986 5555556655 444 467899998776
No 158
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=23.96 E-value=1.2e+02 Score=21.65 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |....+.+++ ... .+..|++|.+.+.
T Consensus 20 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 55 (58)
T 1zx6_A 20 GLKPGDKVQ--LLEKLSPEWYKGSC-NGRTGIFPANYVK 55 (58)
T ss_dssp CBCTTCEEE--EEEECSSSEEEEEE-TTEEEEEEGGGEE
T ss_pred cCCCCCEEE--EEEecCCCEEEEEE-CCcEEEeeHHHEE
Confidence 578899986 5555455544 554 5678999988763
No 159
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=23.91 E-value=1.3e+02 Score=21.82 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEe--CCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNV--GADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdI--G~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |....+.+++.-. ..+..|++|...+.
T Consensus 21 s~~~Gd~i~--v~~~~~~~W~~g~~~~~g~~G~fP~~yv~ 58 (62)
T 2fpe_A 21 ELEVDDPLL--VELQAEDYWYEAYNMRTGARGVFPAYYAI 58 (62)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEETTTCCEEEEEGGGEE
T ss_pred cCCCCCEEE--EEEecCCCEEEEEECCCCCEEEechHHEE
Confidence 578999987 4566667766542 45678999988774
No 160
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=23.40 E-value=97 Score=22.12 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+.
T Consensus 21 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 56 (58)
T 1zlm_A 21 YFEEGDIIY--ITDMSDTNWWKGTS-KGRTGLIPSNYVA 56 (58)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEE-TTEEEEEEGGGEE
T ss_pred cCCCCCEEE--EEEeCCCCEEEEEE-CCCEEEEehHHEE
Confidence 578899986 5555555554 444 5678999987763
No 161
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=23.17 E-value=1e+02 Score=22.39 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++ .... +..|++|...+.
T Consensus 23 s~~~Gd~i~--v~~~~~~~Ww~g~~~-g~~G~~P~~yv~ 58 (62)
T 1uj0_A 23 TFKHGELIT--VLDDSDANWWQGENH-RGTGLFPSNFVT 58 (62)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEET-TEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEeCCCCEEEEEEC-CCEEEechhHEE
Confidence 578899986 5555555555 4444 468999988774
No 162
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=23.14 E-value=1.1e+02 Score=22.05 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl 205 (514)
.++.||+|. |+...+.+ +.... .+..|++|.+.+
T Consensus 24 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv 58 (60)
T 2gnc_A 24 SFKKGASLL--LYHRASEDWWEGRH-NGIDGLVPHQYI 58 (60)
T ss_dssp CBCTTCEEE--EEEEEETTEEEEEE-TTEEEEEEGGGE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCeEEEEeHhhE
Confidence 578999985 55554444 44555 467899997765
No 163
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=22.89 E-value=1.1e+02 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl 205 (514)
.++.||++. |....+.+++ ... .+..|++|.+.+
T Consensus 21 s~~~Gd~i~--v~~~~~~~W~~g~~-~g~~G~~P~~yv 55 (58)
T 2drm_A 21 TFKEGDTII--VHQKDPAGWWEGEL-NGKRGWVPANYV 55 (58)
T ss_dssp CBCTTCEEE--EEECCTTSEEEEEE-TTEEEEEEGGGE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCcEEEEeHHHE
Confidence 578899985 6665555544 555 567899998776
No 164
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=22.89 E-value=1.2e+02 Score=22.83 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++ ... .+..|++|...+.
T Consensus 21 sf~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 56 (68)
T 2ew3_A 21 GFKEGDIIT--LTNQIDENWYEGMI-HGESGFFPINYVE 56 (68)
T ss_dssp CBCTTCEEE--EEEESSSSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCcEEEeeHHHEE
Confidence 578999986 6655555655 444 4678999988874
No 165
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.69 E-value=1.1e+02 Score=22.19 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++ ... .+..|++|...+.
T Consensus 23 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 58 (62)
T 1k4u_S 23 EFQEGDIIL--VLSKVNEEWLEGES-KGKVGIFPKVFVE 58 (62)
T ss_dssp CBCSSCEEE--EEEESSSSCEEEEC-SSCEEEECGGGCC
T ss_pred cCCCCCEEE--EEEeCCCCEEEEEE-CCcEEEEeHHHEE
Confidence 578999986 5555555544 444 4578999988774
No 166
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=22.66 E-value=62 Score=30.07 Aligned_cols=54 Identities=20% Similarity=0.038 Sum_probs=39.8
Q ss_pred eEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEE-e-CCCeE
Q 010232 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS-M-FPDKI 440 (514)
Q Consensus 378 iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~v-d-e~~rI 440 (514)
.+.|+|..+.+..+.|++++.|+.-+++.+.++ . +..|+.+..++... + +.-+|
T Consensus 4 ~l~G~l~~~~~~~~vidv~GvGY~v~~~~~t~~--------~-l~~g~~v~l~~~~~vReda~~l 59 (191)
T 1ixr_A 4 YLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQ--------A-LEEGKEVGVHTHLLLKEEGLSL 59 (191)
T ss_dssp EEEEEEEEECSSEEEEECSSEEEEEECCHHHHH--------H-CCTTSEEEEEECCCCCSSCCCE
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHH--------h-CCCCCeEEEEEEehhhhhhHHh
Confidence 478999999999999999876666666655543 2 23799999998865 3 34453
No 167
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=22.40 E-value=1.1e+02 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.009 Sum_probs=24.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+.
T Consensus 24 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 59 (64)
T 2ak5_A 24 SFSKGDVIH--VTRVEEGGWWEGTH-NGRTGWFPSNYVR 59 (64)
T ss_dssp CBCTTCEEE--EEECCTTSEEEEEE-TTEEEEEEGGGEE
T ss_pred cCCCCCEEE--EeEecCCCEEEEEE-CCCEEEEehHHeE
Confidence 578999986 6665556655 444 4578999988874
No 168
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=22.36 E-value=57 Score=27.46 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=40.7
Q ss_pred CceEEEEEEEEecceEE-EEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe
Q 010232 376 GTLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435 (514)
Q Consensus 376 G~iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd 435 (514)
...+.|+|....+.+.| |.+.+ |..-|+|++-=... .-.+..||.|.|-....+
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~n-G~~~la~i~GKmRk-----~IwI~~GD~VlVe~~~yd 73 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLD-GKTRLGRIPGRLKN-----RIWVREGDVVIVKPWEVQ 73 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEET-TEEEEEECCHHHHH-----HHCCCSCEEEEECCBCCT
T ss_pred CCEEEEEEEEEcCCCEEEEEECC-CCEEEEEEccccee-----eEEecCCCEEEEEeccCC
Confidence 45688999999998887 78888 89999998763322 234778999988765443
No 169
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=22.25 E-value=1.2e+02 Score=21.49 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl 205 (514)
.++.||++. |....+.+++ ...-.+..|++|.+.+
T Consensus 19 s~~~Gd~i~--v~~~~~~~Ww~g~~~~g~~G~~P~~yv 54 (57)
T 1cka_A 19 PFKKGDILR--IRDKPEEQWWNAEDSEGKRGMIPVPYV 54 (57)
T ss_dssp CBCTTCEEE--EEECSSSSEEEEECTTSCEEEEEGGGE
T ss_pred CCCCCCEEE--EEEecCCCcEEEEeCCCCEEEEeHHHE
Confidence 578899985 6666556655 4423467899998776
No 170
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=22.13 E-value=1.2e+02 Score=21.95 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEEEEE-eCCeEE-EEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSG-NENKLD-VNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v-~~~Gv~-VdIG~k~~G~Lp~sEl~p 207 (514)
.++.||++. |+.. .+.+++ ... .+..|++|.+.+.+
T Consensus 19 s~~~Gd~i~--v~~~~~~~~Ww~g~~-~g~~G~~P~~yv~~ 56 (62)
T 2j6f_A 19 TIRVGEIIR--NVKKLQEEGWLEGEL-NGRRGMFPDNFVKE 56 (62)
T ss_dssp CBCTTCEEE--EEEECSSTTEEEEEE-TTEEEEEEGGGEEE
T ss_pred CCcCCCEEE--EEEecCCCCEEEEEE-CCcEEEechHHEEE
Confidence 578999986 5555 455544 554 45789999888743
No 171
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=22.00 E-value=1.4e+02 Score=21.81 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=25.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEe--CCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNV--GADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdI--G~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++.-- ..+..|++|...+.
T Consensus 24 s~~~Gd~i~--v~~~~~~gW~~g~~~~~g~~G~~P~~yv~ 61 (65)
T 2j05_A 24 SFLKGDMFI--VHNELEDGWMWVTNLRTDEQGLIVEDLVE 61 (65)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEETTTCCEEEEEGGGEE
T ss_pred cCCCCCEEE--EeEecCCCEEEEEECCCCCEEEEEhHHeE
Confidence 578999985 6666566655432 44678999988774
No 172
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=21.64 E-value=2.1e+02 Score=27.02 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=35.5
Q ss_pred eEEEEEEEEecceEEEEECCCceEEEEEeec--cccccccCcccccCCCCEEEEEEEEE-eCCC
Q 010232 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISN--MSRTRVTSVSDLLNEGERVKVLVVKS-MFPD 438 (514)
Q Consensus 378 iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Se--ls~~~v~~~~~~~kvGd~VkvkVi~v-de~~ 438 (514)
.+.|+|..+.+..+.+++++.|+ .|+.+. ++ . +.+|+.+++.+.-+ +++.
T Consensus 20 ~l~G~v~~~~~~~~Vi~v~gVGy--~v~v~~~t~~--------~-l~~Ge~v~l~t~~~vRED~ 72 (212)
T 2ztd_A 20 SVRGEVLEVALDHVVIEAAGVGY--RVNATPATLA--------T-LRQGTEARLITAMIVREDS 72 (212)
T ss_dssp EEEEEEEEECSSEEEEEETTEEE--EEECCHHHHT--------T-CCTTSEEEEEEEEEEETTE
T ss_pred EEEEEEEEEECCEEEEEECCeeE--EEEEChHhHH--------h-cCCCCEEEEEEEEEEecCC
Confidence 38999999999999999985333 344443 32 2 47899999998866 3553
No 173
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=21.60 E-value=1.2e+02 Score=21.89 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++ ... .+..|++|...+.
T Consensus 25 s~~~Gd~i~--v~~~~~~~W~~g~~-~g~~G~~P~~yv~ 60 (65)
T 3u23_A 25 ELKVGDIID--INEEVEEGWWSGTL-NNKLGLFPSNFVK 60 (65)
T ss_dssp CBCTTCEEE--EEEEEETTEEEEEE-TTEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCCEEEeehHHEE
Confidence 678999986 5555555544 444 4578999988773
No 174
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=21.14 E-value=1.3e+02 Score=22.27 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=25.8
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~ 206 (514)
-.++.||++. |+...+.+++.-.-.+..|++|.+.+.
T Consensus 30 Ls~~~Gd~i~--v~~~~~~~W~~g~~~g~~G~~P~~yv~ 66 (72)
T 4glm_A 30 LDFEVGDKIR--ILATLEDGWLEGSLKGRTGIFPYRFVK 66 (72)
T ss_dssp CCBCTTCEEE--EEEECSTTEEEEEETTEEEEEEGGGEE
T ss_pred CCCCCCCEEE--EEEccCCCEEEEEECCcEEEEChHHeE
Confidence 3678999986 666666666543334578999988774
No 175
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=20.97 E-value=1e+02 Score=22.83 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=25.9
Q ss_pred CCCCCCEEEEEEEEE-eCCeEEEE--eCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSG-NENKLDVN--VGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v-~~~Gv~Vd--IG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+.. .+.+++.- .-.+..|++|...+.
T Consensus 28 sf~~Gd~i~--v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~ 66 (70)
T 1gcq_C 28 RLNPGDIVE--LTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66 (70)
T ss_dssp CBCTTCEEE--EEECCTTCSEEEEEETTTTEEEEEEGGGEE
T ss_pred CcCCCCEEE--EEeCCCCCCCeEEEeCCCCCEeEeehHHeE
Confidence 578999985 6666 45676654 445678999988774
No 176
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=20.96 E-value=1.2e+02 Score=21.43 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...+.+++ ... .+..|++|.+.+.
T Consensus 20 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 55 (58)
T 2vwf_A 20 GFRRGDFIH--VMDNSDPNWWKGAC-HGQTGMFPRNYVT 55 (58)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEE-TTEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEcCCCCEEEEEE-CCcEEEEchHHeE
Confidence 578899986 5555455544 555 5678999988763
No 177
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=1.4e+02 Score=22.15 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++.---.+..|++|...+.
T Consensus 25 s~~~Gd~i~--v~~~~~~~Ww~g~~~g~~G~~P~~yv~ 60 (68)
T 2dl4_A 25 EMRPGDIIT--LLEDSNEDWWKGKIQDRIGFFPANFVQ 60 (68)
T ss_dssp CCCTTCEEE--EEECCCSSEEEEECSSCEEEEETTTEE
T ss_pred CCCCCCEEE--EEEeCCCCEEEEEECCcEEEEehHHeE
Confidence 578999986 555555565533334578999988874
No 178
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=20.77 E-value=49 Score=24.80 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEEEEEeCCeE-EEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKL-DVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv-~VdIG~k~~G~Lp~sEl 205 (514)
.++.||+|. |+...+.++ ......+..|++|.+.+
T Consensus 22 s~~~Gd~i~--v~~~~~~~Ww~g~~~~G~~G~fP~nyV 57 (60)
T 2lx7_A 22 RFAAGELIT--LLQVPDGGWWEGEKEDGLRGWFPASYV 57 (60)
T ss_dssp CCCTTCEEE--BSCCCTTSCEEEECTTSCEEEECGGGE
T ss_pred cCCCCCEEE--EeEecCCCeEEEEeCCCCEEEEcHHHE
Confidence 688999985 666655554 45555567899998876
No 179
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=20.73 E-value=1.1e+02 Score=22.66 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=24.9
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+..+++.+.+....+..|++|...+.
T Consensus 26 s~~~Gd~i~--v~~~~~~Ww~~~~~~g~~G~~P~~yv~ 61 (68)
T 2k2m_A 26 SVKQRDVLE--VLDDSRKWWKVRDPAGQEGYVPYNILT 61 (68)
T ss_dssp CBCTTCEEE--EEECSSSEEEEECTTSCCEEEEGGGEE
T ss_pred cCCCCCEEE--EEEcCCCeEEEEeCCCCEEEEEhhhEE
Confidence 578899986 555554445554444678999988874
No 180
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=20.68 E-value=1.2e+02 Score=21.97 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl 205 (514)
.++.|+++. |+...+.+++.---.+..|++|.+.+
T Consensus 27 s~~~Gd~i~--v~~~~~~~Ww~g~~~g~~G~~P~~yv 61 (65)
T 3ulr_B 27 SFDPDDIIT--NIEMIDDGWWRGVCKGRYGLFPANYV 61 (65)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEETTEEEEEEGGGE
T ss_pred eEecCCEEE--EEEecCCCEEEEEECCcEEEEehHHe
Confidence 678899986 56665566554333457899998776
No 181
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=20.65 E-value=1.3e+02 Score=22.21 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=25.8
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCC-ceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGA-DLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~-k~~G~Lp~sEl~p 207 (514)
.++.||++. |+...+.|++ ..... +..|++|.+.+.+
T Consensus 21 s~~~Gd~i~--v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~ 59 (69)
T 1ruw_A 21 PLKKGDIVF--ISRDEPSGWSLAKLLDGSKEGWVPTAYMTP 59 (69)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEETTSSCEEEEEGGGEEE
T ss_pred cCCCCCEEE--EEEecCCCeEEEEECCCCCEEEEehHHeEE
Confidence 578999986 5566555544 55542 6789999988753
No 182
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=20.36 E-value=1.3e+02 Score=22.26 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=25.6
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~p 207 (514)
.++.||+|. |+...+.+++ ...-.+..|++|.+.+.+
T Consensus 21 sf~~Gd~i~--v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~ 58 (65)
T 1b07_A 21 PFKKGDILR--IRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58 (65)
T ss_dssp CBCTTCEEE--EEECSSSSEEEEECTTSCEEEEEGGGEEE
T ss_pred CCcCCCEEE--EEEecCCCeEEEEECCCCEEEEChHHEee
Confidence 578999986 6666555655 442346789999988753
No 183
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=20.35 E-value=1.2e+02 Score=22.11 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~p 207 (514)
.++.|+++. |+...+.+++ ... .+..|++|...+.+
T Consensus 7 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~~ 43 (63)
T 1tuc_A 7 TMKKGDILT--LLNSTNKDWWKVEV-NDRQGFVPAAYVKK 43 (63)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEE-TTEEEEEEGGGEEE
T ss_pred CCCCCCEEE--EEEecCCCEEEEEE-CCcEEEEeHHHEEE
Confidence 578899985 5665555554 544 45789999888743
No 184
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=20.18 E-value=1.5e+02 Score=21.24 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeC-CceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVG-ADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG-~k~~G~Lp~sEl~ 206 (514)
.++.|+++. |+...+.+++ .... .+..|++|.+.+.
T Consensus 24 s~~~Gd~i~--v~~~~~~~W~~g~~~~~g~~G~~P~~yv~ 61 (64)
T 4f14_A 24 SFRDGDYIV--NVQPIDDGWMYGTVQRTGRTGMLPANYIE 61 (64)
T ss_dssp CBCTTCEEE--EEEECSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCEEE--EEEeCCCCeEEEEECCCCCEEEEeHHHeE
Confidence 678999985 5665556655 4443 6688999988763
No 185
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=20.14 E-value=1.4e+02 Score=22.07 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||+|. |+...+.+++ ... .+..|++|.+.+.
T Consensus 25 s~~~Gd~i~--v~~~~~~~Ww~g~~-~g~~G~~P~~yv~ 60 (68)
T 2djq_A 25 KFNKGDVIL--LRRQLDENWYQGEI-NGVSGIFPASSVE 60 (68)
T ss_dssp CCCTTCEEE--EEECCCSSEEEEEE-TTEEEEEESSSEE
T ss_pred cCCCCCEEE--EEEecCCCEEEEEE-CCcEEEeehHHEE
Confidence 578999985 5665555554 554 4578999988874
No 186
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.12 E-value=1.3e+02 Score=25.61 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=36.2
Q ss_pred CCCCceEEEEEEEEecceEE-EEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 373 LREGTLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
...|+. .|+|+.....|.| |.+.+ |..-++|++--... .-.+.+||.|.+.+.
T Consensus 29 ~~~~e~-~G~Vi~~lgn~~y~V~~~d-G~~~l~~i~GK~Rk-----~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 29 KEEGQE-YGQVQRMLGNGRLDAYCFD-GQKRLCHIRGKMRK-----KVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCTTEE-EEEEEEEEETTEEEEEETT-SCEEEEECCHHHHH-----HSCCCTTCEEEEEEC
T ss_pred CCCCEE-EEEEEEEcCCCEEEEEeCC-CCEEEEEEcCceec-----CCcCCCCCEEEEEEE
Confidence 345554 7999999996665 66777 77778877654322 223558999988654
No 187
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=20.03 E-value=59 Score=25.86 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=37.7
Q ss_pred ceEEEEEEEEe-cceEEEEECCC-ceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCC-Ce
Q 010232 377 TLLEGTVKKIY-PYGAQIRIGDS-NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFP-DK 439 (514)
Q Consensus 377 ~iV~G~V~~I~-~~GaFV~I~~~-gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~-~r 439 (514)
....|+|..+. -|| |+.-.+. +-+-|+|+|.|... ..++.||+|...+.. .++ ++
T Consensus 7 ~~~~G~V~~~~KGfG-FI~~ddg~g~DvFvH~s~i~~g------~~l~~G~~V~F~v~~-~~k~G~ 64 (79)
T 2ytv_A 7 GLRRATVECVKDQFG-FINYEVGDSKKLFFHVKEVQDG------IELQAGDEVEFSVIL-NQRTGK 64 (79)
T ss_dssp SBCCEEEEECCSSEE-EESCCCSSSSSEEEETTTCCSS------CCCCTTCEEECBCEE-CSSSCC
T ss_pred CcccEEEEEecccce-eEeCCCCCCCcEEEEhHHcCCC------CcCCCCCEEEEEEEE-CCCCCC
Confidence 34578888874 355 6555541 27899999999721 468999999998864 333 55
Done!