Query 010232
Match_columns 514
No_of_seqs 354 out of 2400
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 22:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010232.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010232hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sroa_ b.40.4.5 (A:) S1 RNA-b 99.7 2.4E-18 1.7E-22 138.8 6.6 75 372-447 2-76 (76)
2 d3bzka4 b.40.4.5 (A:637-730) T 99.7 1.3E-16 9.2E-21 133.6 9.6 80 371-452 14-94 (94)
3 d1kl9a2 b.40.4.5 (A:3-88) Euka 99.6 4.2E-16 3.1E-20 128.2 9.6 74 373-446 11-86 (86)
4 d2ahob2 b.40.4.5 (B:1-84) Euka 99.6 3.9E-16 2.8E-20 127.7 7.6 74 373-446 9-84 (84)
5 d2ba0a1 b.40.4.5 (A:53-135) S1 99.6 1.8E-15 1.3E-19 123.4 8.8 78 373-451 3-81 (83)
6 d1go3e1 b.40.4.5 (E:79-184) C- 99.5 3.8E-15 2.8E-19 127.2 8.1 83 374-458 2-101 (106)
7 d2je6i1 b.40.4.5 (I:66-152) S1 99.5 2E-14 1.4E-18 118.2 7.9 74 373-447 5-81 (87)
8 d2z0sa1 b.40.4.5 (A:60-147) S1 99.5 2.8E-14 2E-18 117.5 7.8 74 373-447 5-82 (88)
9 d1wi5a_ b.40.4.5 (A:) S1-domai 99.4 1E-13 7.3E-18 120.6 7.8 80 371-451 17-99 (119)
10 d1kl9a2 b.40.4.5 (A:3-88) Euka 99.4 1.2E-12 8.6E-17 107.2 9.8 71 295-366 12-86 (86)
11 d1sroa_ b.40.4.5 (A:) S1 RNA-b 99.3 4.6E-13 3.4E-17 107.3 5.9 72 294-367 3-76 (76)
12 d3bzka4 b.40.4.5 (A:637-730) T 99.3 2.1E-12 1.5E-16 107.5 9.6 85 280-366 3-89 (94)
13 d2ahob2 b.40.4.5 (B:1-84) Euka 99.3 1.7E-12 1.2E-16 105.6 8.8 71 295-366 10-84 (84)
14 d1e3pa2 b.40.4.5 (A:656-717) S 99.3 6.5E-14 4.7E-18 108.4 -3.4 58 381-439 1-62 (62)
15 d2nn6h1 b.40.4.5 (H:73-167) S1 99.2 2.6E-12 1.9E-16 107.3 5.4 74 373-447 6-89 (95)
16 d2ba0a1 b.40.4.5 (A:53-135) S1 99.1 1.1E-10 7.8E-15 94.5 9.9 77 168-281 1-77 (83)
17 d2je6i1 b.40.4.5 (I:66-152) S1 99.1 1.1E-10 7.8E-15 95.4 9.2 81 166-281 1-81 (87)
18 d2z0sa1 b.40.4.5 (A:60-147) S1 99.1 3E-10 2.2E-14 92.9 9.5 81 167-281 2-82 (88)
19 d2ix0a3 b.40.4.5 (A:558-644) E 99.0 5E-10 3.7E-14 91.8 9.6 68 375-442 3-83 (87)
20 d1go3e1 b.40.4.5 (E:79-184) C- 99.0 3.1E-10 2.3E-14 96.2 8.2 72 295-367 2-90 (106)
21 d1wi5a_ b.40.4.5 (A:) S1-domai 99.0 1E-10 7.3E-15 101.3 4.9 74 293-367 18-95 (119)
22 d1y14b1 b.40.4.5 (B:81-171) C- 99.0 1.3E-09 9.2E-14 89.6 10.9 66 375-442 3-79 (91)
23 d2c35b1 b.40.4.5 (B:78-171) C- 98.8 7E-09 5.1E-13 85.6 9.8 66 375-442 4-82 (94)
24 d2nn6g1 b.40.4.5 (G:107-194) S 98.8 4.7E-09 3.4E-13 86.1 7.6 73 373-447 4-76 (88)
25 d2nn6h1 b.40.4.5 (H:73-167) S1 98.7 1.4E-08 1E-12 84.2 7.1 87 167-281 3-89 (95)
26 d2ja9a1 b.40.4.5 (A:62-151) S1 98.6 4.1E-08 3E-12 80.6 7.6 74 373-447 5-78 (90)
27 d2nn6g1 b.40.4.5 (G:107-194) S 98.5 1.9E-07 1.4E-11 76.3 9.4 74 168-280 2-75 (88)
28 d1e3pa2 b.40.4.5 (A:656-717) S 98.5 9.4E-10 6.9E-14 84.5 -4.3 55 302-357 1-61 (62)
29 d1y14b1 b.40.4.5 (B:81-171) C- 98.4 3.4E-07 2.5E-11 74.6 8.7 66 296-361 3-78 (91)
30 d2ix0a3 b.40.4.5 (A:558-644) E 98.4 3.1E-07 2.2E-11 74.8 8.3 66 296-362 3-83 (87)
31 d1hh2p1 b.40.4.5 (P:127-198) S 98.4 9.9E-07 7.2E-11 69.3 10.0 64 372-443 5-71 (72)
32 d1hh2p1 b.40.4.5 (P:127-198) S 98.4 9.6E-07 7E-11 69.3 9.5 64 295-364 7-72 (72)
33 d2ja9a1 b.40.4.5 (A:62-151) S1 98.3 1E-06 7.5E-11 72.0 9.7 76 168-281 3-78 (90)
34 d2c35b1 b.40.4.5 (B:78-171) C- 98.3 9.6E-07 7E-11 72.4 8.4 71 296-366 4-88 (94)
35 d2nn6i1 b.40.4.5 (I:61-185) Ex 98.1 4.5E-06 3.2E-10 72.2 8.8 74 373-446 5-88 (125)
36 d2asba1 b.40.4.5 (A:108-183) S 97.9 1.2E-05 9E-10 63.5 7.7 64 374-443 3-75 (76)
37 d2asba1 b.40.4.5 (A:108-183) S 97.9 1.4E-05 9.8E-10 63.3 7.0 64 171-278 3-76 (76)
38 d1smxa_ b.40.4.5 (A:) S1-domai 97.3 0.00028 2.1E-08 56.8 7.5 57 377-434 2-69 (87)
39 d2nn6i1 b.40.4.5 (I:61-185) Ex 97.0 0.0012 9E-08 56.3 9.1 78 168-281 3-89 (125)
40 d1smxa_ b.40.4.5 (A:) S1-domai 95.6 0.02 1.5E-06 45.6 8.1 34 174-207 2-37 (87)
41 d1luza_ b.40.4.5 (A:) Viral st 93.2 0.15 1.1E-05 39.6 7.6 74 373-448 6-82 (85)
42 d3d31a1 b.40.6.3 (A:230-348) S 92.6 1.4 9.9E-05 34.8 13.5 104 299-431 4-110 (119)
43 d1jjga_ b.40.4.5 (A:) Viral st 92.0 0.13 9.5E-06 40.9 5.9 62 372-435 29-92 (102)
44 d1c9oa_ b.40.4.5 (A:) Major co 88.3 1.9 0.00014 31.7 9.5 58 380-444 3-63 (66)
45 d1k3ra1 b.40.4.10 (A:93-163) H 87.8 1.1 7.9E-05 33.7 7.7 31 168-198 6-36 (71)
46 d1k3ra1 b.40.4.10 (A:93-163) H 83.6 1.5 0.00011 32.9 6.5 49 372-434 7-55 (71)
47 d1luza_ b.40.4.5 (A:) Viral st 82.1 2.3 0.00017 32.7 7.3 68 295-365 7-79 (85)
48 d1mjca_ b.40.4.5 (A:) Major co 81.3 3.6 0.00026 30.3 8.2 59 378-442 3-64 (69)
49 d1h95a_ b.40.4.5 (A:) Y-box pr 80.8 3.4 0.00025 31.4 8.1 61 377-439 7-70 (79)
50 d1jjga_ b.40.4.5 (A:) Viral st 77.6 3.3 0.00024 32.6 7.0 58 295-355 31-93 (102)
51 d1cuka3 b.40.4.2 (A:1-64) DNA 76.7 4.3 0.00031 29.5 7.2 49 378-434 4-52 (64)
52 d1wfqa_ b.40.4.5 (A:) Cold sho 76.2 11 0.00079 29.0 10.0 69 374-448 14-84 (89)
53 d3d31a1 b.40.6.3 (A:230-348) S 71.9 18 0.0013 27.7 10.7 20 175-194 4-23 (119)
54 d1yvca1 b.40.4.12 (A:1-69) Hyp 71.7 5.1 0.00037 29.5 6.6 46 295-354 14-60 (69)
55 d1yeza1 b.40.4.12 (A:1-68) Hyp 71.5 6.1 0.00045 28.9 7.0 46 295-354 12-58 (68)
56 d1ah9a_ b.40.4.5 (A:) Translat 70.8 2 0.00015 32.2 4.1 60 376-440 5-66 (71)
57 d1c9oa_ b.40.4.5 (A:) Major co 70.3 6 0.00044 28.7 6.7 47 301-352 3-53 (66)
58 d1wfqa_ b.40.4.5 (A:) Cold sho 68.8 20 0.0014 27.4 9.9 36 170-205 13-49 (89)
59 d1g6pa_ b.40.4.5 (A:) Major co 65.9 5.4 0.00039 29.0 5.6 58 380-444 2-62 (66)
60 d1cuka3 b.40.4.2 (A:1-64) DNA 62.7 15 0.0011 26.4 7.5 48 299-354 4-53 (64)
61 d1bvsa3 b.40.4.2 (A:1-63) DNA 62.5 2.6 0.00019 30.6 3.1 48 378-434 4-51 (63)
62 d1ixra2 b.40.4.2 (A:1-62) DNA 58.8 3.8 0.00028 29.6 3.5 48 378-434 4-51 (62)
63 d1mjca_ b.40.4.5 (A:) Major co 58.1 11 0.00078 27.6 6.0 49 299-352 3-56 (69)
64 d1yvca1 b.40.4.12 (A:1-69) Hyp 56.2 12 0.00091 27.2 6.1 48 372-435 12-60 (69)
65 d1h95a_ b.40.4.5 (A:) Y-box pr 56.1 9.4 0.00069 28.7 5.6 53 298-352 7-65 (79)
66 d1g6pa_ b.40.4.5 (A:) Major co 55.5 3.8 0.00028 29.9 3.0 47 300-351 1-51 (66)
67 d1ixra2 b.40.4.2 (A:1-62) DNA 50.3 11 0.00082 26.9 4.9 46 299-353 4-51 (62)
68 d1yeza1 b.40.4.12 (A:1-68) Hyp 49.8 21 0.0015 25.7 6.5 47 372-434 10-57 (68)
69 d1uwva1 b.40.4.12 (A:15-74) rR 48.0 38 0.0027 23.5 7.5 43 298-354 1-44 (60)
70 d2vnud2 b.40.4.5 (D:911-998) E 46.9 11 0.00077 29.2 4.5 31 379-409 4-34 (88)
71 d2ix0a2 b.40.4.5 (A:4-82) Exor 46.9 18 0.0013 27.1 5.8 49 294-351 13-62 (79)
72 d1gcqa_ b.34.2.1 (A:) Growth f 45.8 12 0.00087 26.0 4.3 36 168-206 18-54 (56)
73 d1uj0a_ b.34.2.1 (A:) Signal t 42.1 15 0.0011 25.6 4.4 34 169-205 20-54 (58)
74 d1utia_ b.34.2.1 (A:) Grb2-rel 42.0 15 0.0011 25.6 4.3 36 169-207 19-55 (57)
75 d1uwva1 b.40.4.12 (A:15-74) rR 41.9 50 0.0036 22.8 9.0 53 377-445 1-53 (60)
76 d1h9ma2 b.40.6.2 (A:74-141) Cy 41.7 27 0.002 24.9 6.0 50 377-432 6-59 (68)
77 d1i07a_ b.34.2.1 (A:) EPS8 SH3 41.2 8.2 0.0006 27.1 2.8 36 169-206 19-54 (59)
78 d1sema_ b.34.2.1 (A:) Growth f 40.5 15 0.0011 25.5 4.2 37 168-207 19-56 (58)
79 d1ckaa_ b.34.2.1 (A:) C-Crk, N 40.1 15 0.0011 25.5 4.1 35 169-205 19-54 (57)
80 d1hr0w_ b.40.4.5 (W:) Translat 39.9 1.5 0.00011 33.0 -1.7 57 378-440 8-67 (71)
81 d1jo8a_ b.34.2.1 (A:) Actin bi 36.4 19 0.0014 24.8 4.2 36 168-205 17-54 (58)
82 d1efna_ b.34.2.1 (A:) Fyn prot 36.3 23 0.0017 24.2 4.6 38 168-207 17-56 (57)
83 d1ah9a_ b.40.4.5 (A:) Translat 35.6 9.8 0.00071 28.2 2.5 60 296-361 4-67 (71)
84 d1k4us_ b.34.2.1 (S:) p67phox 35.4 22 0.0016 25.0 4.4 37 168-207 22-59 (62)
85 d1uhfa_ b.34.2.1 (A:) Intersec 35.3 15 0.0011 26.7 3.5 38 168-208 25-62 (69)
86 d2rn8a1 b.34.2.1 (A:176-228) B 35.2 13 0.00091 25.5 2.9 36 168-205 15-51 (53)
87 d1ng2a2 b.34.2.1 (A:215-332) p 34.3 19 0.0014 28.3 4.4 36 169-207 32-68 (118)
88 d1bvsa3 b.40.4.2 (A:1-63) DNA 34.1 14 0.001 26.4 3.1 27 175-201 4-31 (63)
89 d1gria1 b.34.2.1 (A:1-56) Grow 33.2 19 0.0014 24.8 3.7 35 169-205 18-53 (56)
90 d1j3ta_ b.34.2.1 (A:) Intersec 32.6 23 0.0017 25.8 4.2 36 168-206 27-62 (74)
91 d1wlpb1 b.34.2.1 (B:229-281) p 32.6 19 0.0014 24.6 3.6 34 169-205 18-52 (53)
92 d1guta_ b.40.6.1 (A:) Molybdat 31.6 46 0.0034 23.5 5.8 52 375-432 4-59 (67)
93 d1qcfa1 b.34.2.1 (A:80-145) He 31.0 28 0.0021 24.4 4.4 38 168-207 21-59 (65)
94 d2iima1 b.34.2.1 (A:58-119) p5 30.6 29 0.0021 24.1 4.4 37 168-206 23-60 (62)
95 d2ix0a2 b.40.4.5 (A:4-82) Exor 29.9 33 0.0024 25.5 4.8 48 374-432 14-62 (79)
96 d1h9ma1 b.40.6.2 (A:1-73) Cyto 29.1 55 0.004 23.4 5.9 52 375-432 5-60 (73)
97 d1gl5a_ b.34.2.1 (A:) tyrosine 27.8 31 0.0023 24.4 4.2 39 168-208 19-58 (67)
98 d1k9aa1 b.34.2.1 (A:6-76) Carb 27.5 33 0.0024 24.6 4.3 36 169-206 24-61 (71)
99 d1u06a1 b.34.2.1 (A:7-61) alph 27.4 37 0.0027 23.1 4.4 35 168-205 17-52 (55)
100 d1e1oa1 b.40.4.1 (A:11-153) Ly 27.2 1.2E+02 0.0085 24.6 8.5 67 378-444 58-129 (143)
101 d1uhfa_ b.34.2.1 (A:) Intersec 26.3 20 0.0015 25.9 2.9 32 295-328 28-59 (69)
102 d1opka1 b.34.2.1 (A:83-139) Ab 25.7 43 0.0031 22.9 4.5 36 169-207 18-55 (57)
103 d2vnud2 b.40.4.5 (D:911-998) E 24.6 91 0.0066 23.5 6.6 29 300-328 4-34 (88)
104 d1ue9a_ b.34.2.1 (A:) Intersec 24.0 54 0.0039 23.7 5.1 37 168-206 24-65 (80)
105 d1fr3a_ b.40.6.1 (A:) Molybdat 23.9 26 0.0019 24.9 3.0 18 173-190 6-23 (67)
106 d1oota_ b.34.2.1 (A:) Hypothet 21.1 41 0.003 23.1 3.6 34 169-205 19-55 (58)
107 d1ng2a1 b.34.2.1 (A:157-214) p 20.8 22 0.0016 24.5 2.0 36 169-207 20-56 (58)
108 d1fr3a_ b.40.6.1 (A:) Molybdat 20.7 25 0.0018 25.0 2.3 54 376-432 6-59 (67)
109 d1h9ra1 b.40.6.2 (A:123-199) C 20.7 88 0.0064 22.5 5.7 49 377-432 7-61 (77)
110 d1krha1 b.43.4.2 (A:106-205) B 20.6 42 0.0031 25.0 3.9 39 345-383 3-44 (100)
111 d1fdra1 b.43.4.2 (A:2-100) Fer 20.1 70 0.0051 24.0 5.2 38 344-383 2-40 (99)
No 1
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=2.4e-18 Score=138.82 Aligned_cols=75 Identities=35% Similarity=0.588 Sum_probs=71.9
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
++++|+++.|+|++|++||+||+|++ +++||||.|+|+|.++.+|++.|++||+|+|+|+++|+++||.||||++
T Consensus 2 d~kvG~iv~G~V~~v~~~G~fV~l~~-~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~~~ri~LS~k~a 76 (76)
T d1sroa_ 2 EIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEA 76 (76)
T ss_dssp CCCTTSEEEEEEEEEETTEEEEECSS-SCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCTTCCCEEEECCC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEeCC-CCEEEEEhHHhCccccCCHHHccCCCCEEEEEEEEECCCCCEEEEEEcC
Confidence 68999999999999999999999998 8999999999999999999999999999999999998778999999974
No 2
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.65 E-value=1.3e-16 Score=133.59 Aligned_cols=80 Identities=33% Similarity=0.544 Sum_probs=76.2
Q ss_pred ccCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCcC
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLES 449 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~~ 449 (514)
.++++|+++.|+|++|+++|+||+|++ ++.||||.++++|.++.++++.|++||.|+|+|+++| +++||.||+|+. +
T Consensus 14 ~~~k~G~iv~g~V~~v~~~G~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~i~LS~K~~-e 91 (94)
T d3bzka4 14 KDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS-D 91 (94)
T ss_dssp GGCCTTCEEEEEEEEEETTEEEEECSS-SSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTEEEEESCTT-C
T ss_pred hcCCCCCEEEEEEEEEECcEEEEEeCC-CceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCEEEEEEecc-C
Confidence 479999999999999999999999998 8999999999999999999999999999999999998 899999999975 7
Q ss_pred CCC
Q 010232 450 EPG 452 (514)
Q Consensus 450 ~P~ 452 (514)
+|+
T Consensus 92 ~P~ 94 (94)
T d3bzka4 92 TPG 94 (94)
T ss_dssp CCC
T ss_pred CCC
Confidence 775
No 3
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=4.2e-16 Score=128.15 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=57.7
Q ss_pred CCCCceEEEEEEEEecceEEEEECCC-ceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEec
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIAD 446 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~ 446 (514)
.++|++|.|+|++|+++|+||+|... |++||||.++++|.++.++.+.|++||.|+|+|+++| +++||.||+|+
T Consensus 11 p~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~LS~Kq 86 (86)
T d1kl9a2 11 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRR 86 (86)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEEEeeC
Confidence 47899999999999999999999632 7999999999999999999999999999999999998 89999999985
No 4
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.61 E-value=3.9e-16 Score=127.68 Aligned_cols=74 Identities=26% Similarity=0.444 Sum_probs=64.7
Q ss_pred CCCCceEEEEEEEEecceEEEEECCC-ceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEec
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIAD 446 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~ 446 (514)
.++|+++.|+|++|+++|+||+|... |++||||.++++|.++.++.+.|++||+|+|+|+++| +++||.||+|+
T Consensus 9 p~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~LS~Kq 84 (84)
T d2ahob2 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKK 84 (84)
T ss_dssp CCTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEEESSS
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEEEEcC
Confidence 46899999999999999999999732 7999999999999999999999999999999999998 88999999985
No 5
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.58 E-value=1.8e-15 Score=123.37 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=72.0
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeecccccc-ccCcccccCCCCEEEEEEEEEeCCCeEEEEEecCcCCC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVKSMFPDKISLSIADLESEP 451 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~-v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l~~~P 451 (514)
.++|++|.|+|++++++|+||+|++ ++.||||+++++|.+ ..++++.|++||.|.|+|+++++++||.||||+....|
T Consensus 3 Pk~Gd~V~G~V~~v~~~g~~V~i~~-~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~i~LS~k~~~~~k 81 (83)
T d2ba0a1 3 PSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICRP 81 (83)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCEE
T ss_pred CCCCCEEEEEEEEEECCEEEEecCC-CeeEEEecccccccccccChhhhcccccEEEEEEEEECCCCCEEEEecCCCCCC
Confidence 4789999999999999999999998 899999999999875 78999999999999999999987789999999876544
No 6
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.54 E-value=3.8e-15 Score=127.22 Aligned_cols=83 Identities=22% Similarity=0.395 Sum_probs=73.3
Q ss_pred CCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc-----------cCcccccCCCCEEEEEEEEEe-CCCe--
Q 010232 374 REGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV-----------TSVSDLLNEGERVKVLVVKSM-FPDK-- 439 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v-----------~~~~~~~kvGd~VkvkVi~vd-e~~r-- 439 (514)
++|++++|+|++|++||+||+|+ +++||||+++|+++++ .++.+.|++||.|+|+|++|| +++|
T Consensus 2 ~~gei~~g~V~~v~~~G~FVel~--~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd~~~~~~~ 79 (106)
T d1go3e1 2 EMYELIEGEVVDVVEFGSFVRLG--PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 79 (106)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred CCCCEEEEEEEEEeeeEEEEEee--CeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEEEchhhcccc
Confidence 68999999999999999999996 5999999999999887 478899999999999999998 5554
Q ss_pred ---EEEEEecCcCCCCccccch
Q 010232 440 ---ISLSIADLESEPGLFVSDK 458 (514)
Q Consensus 440 ---I~LSlK~l~~~P~~~~~~k 458 (514)
|.||+|+...+||+.+.++
T Consensus 80 ~~~i~ls~K~~~~~~~e~~~~~ 101 (106)
T d1go3e1 80 GSKIALTMRQPYLGKLEWIEEE 101 (106)
T ss_dssp -CEEEEECCSTTCEEHHHHHHH
T ss_pred CceeecccccCCCCcchhhhhH
Confidence 8899999999998776543
No 7
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.49 E-value=2e-14 Score=118.21 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeecccccccc---CcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT---SVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~---~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
.++|++|.|+|++++++|+||+|++ ++.||||.++++|.++. ++++.|++||.|.|+|+++|+++++.||||+.
T Consensus 5 Pk~Gdiv~G~V~~i~~~g~fV~i~~-~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~i~LS~k~~ 81 (87)
T d2je6i1 5 PKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGK 81 (87)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCST
T ss_pred CCCCCEEEEEEEEEECCEEEEEeCC-CEEEEEehHHhCCceeccccccchhhcccceEEEEEEEECCCCCEEEEEecC
Confidence 5789999999999999999999998 79999999999998664 67789999999999999999778999999865
No 8
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=99.48 E-value=2.8e-14 Score=117.50 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeecccccccc----CcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT----SVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~----~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
.++|++|.|+|++++++|+||+|++ ++.||||.+++++.++. ++++.|++||.|+|+|+++++++++.||||+.
T Consensus 5 Pk~GdvV~G~V~~v~~~g~fV~i~~-~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~i~Ls~k~~ 82 (88)
T d2z0sa1 5 PQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGE 82 (88)
T ss_dssp CCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSS
T ss_pred CCCCCEEEEEEEEEECCeEEEEeCC-CeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECCCCCEEEEEecC
Confidence 5799999999999999999999998 79999999999998764 67889999999999999999778999999864
No 9
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42 E-value=1e-13 Score=120.56 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=72.7
Q ss_pred ccCCCCceEEEEEEEEecceEEEEEC-CCceEEEEEeecccccc-ccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecC
Q 010232 371 LNLREGTLLEGTVKKIYPYGAQIRIG-DSNRSGLLHISNMSRTR-VTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADL 447 (514)
Q Consensus 371 ~~l~~G~iV~G~V~~I~~~GaFV~I~-~~gi~GLvh~Sels~~~-v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l 447 (514)
..|++|+++.|+|++|+++|+||+|+ + ++.||||++++++.+ ..+|.+.|++||.|+|+|++++ ++++|.||+|+.
T Consensus 17 ~~l~~G~iv~G~V~~i~~~G~~V~lg~~-~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~~~~~i~LS~k~~ 95 (119)
T d1wi5a_ 17 EALKPGMLLTGTVSSLEDHGYLVDIGVD-GTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TTCCTTCEEEEEEEEECSSEEEEECCCS-SCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred hhcCCCCEEEEEEEEEeccEEEEEEecc-ccceEEeHHHhccccccCCHHHhcccceEEEEEEEEEeCCCCEEEEEecHH
Confidence 47999999999999999999999996 5 799999999999874 7889999999999999999998 788999999977
Q ss_pred cCCC
Q 010232 448 ESEP 451 (514)
Q Consensus 448 ~~~P 451 (514)
....
T Consensus 96 ~~~~ 99 (119)
T d1wi5a_ 96 EVST 99 (119)
T ss_dssp CSCC
T ss_pred Hhhh
Confidence 6533
No 10
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.36 E-value=1.2e-12 Score=107.18 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=57.2
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC---CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~---Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~ 366 (514)
+.|+++.|+|+++.++|+||++. |++||||.+++ +.+..++.+.. .+||.+.|+|+++|+++++|.||+|+
T Consensus 12 ~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~-~~Gd~v~~kV~~vd~~~~ki~LS~Kq 86 (86)
T d1kl9a2 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLI-RIGRNECVVVIRVDKEKGYIDLSKRR 86 (86)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTT
T ss_pred CCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEe-ecccEEEEEEEEEECCCCEEEEEeeC
Confidence 57999999999999999999994 79999999999 77788888775 89999999999999999999999984
No 11
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=99.33 E-value=4.6e-13 Score=107.34 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=65.7
Q ss_pred hcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
++.|+++.|+|+++.++|+||+++ |++||||.+++ +.+..++++.. .+||++.|+|+++|+ ++||.||+|++
T Consensus 3 ~kvG~iv~G~V~~v~~~G~fV~l~~~~~Glv~~sels~~~~~~~~~~~-~~G~~v~v~Vi~id~-~~ri~LS~k~a 76 (76)
T d1sroa_ 3 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYL-QMGQEVPVKVLEVDR-QGRIRLSIKEA 76 (76)
T ss_dssp CCTTSEEEEEEEEEETTEEEEECSSSCCCBCCTTSSCSSCCSCHHHHC-CTTCEEEEEEEECCT-TCCCEEEECCC
T ss_pred CCCCCEEEEEEEEEeCcEEEEEeCCCCEEEEEhHHhCccccCCHHHcc-CCCCEEEEEEEEECC-CCCEEEEEEcC
Confidence 579999999999999999999996 79999999999 78888998875 899999999999996 57899999864
No 12
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.32 E-value=2.1e-12 Score=107.46 Aligned_cols=85 Identities=16% Similarity=0.065 Sum_probs=73.6
Q ss_pred HHHHHhhhhHHHhhhcCCCEEEEEEEEEECCeEEEEEC-CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCC
Q 010232 280 RLFRKMAWHRVRQIKQLNEPIEVKFTEWNTGGLLTRIE-GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDT 357 (514)
Q Consensus 280 k~~~~~~w~~l~~~~k~GeiV~GkV~~v~~~G~fVdi~-Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~ 357 (514)
.+.....++.+ +.++.|++++|+|+++.++|+||+++ |+.||||.+++ +.++.++.+.+ ++||.|.|+|+++|.++
T Consensus 3 ~a~~~~~ie~~-~~~k~G~iv~g~V~~v~~~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~-~vGq~v~~~V~~id~~~ 80 (94)
T d3bzka4 3 TAEFQEGVESL-KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVV-KAGDIVKVKVMEVDIPR 80 (94)
T ss_dssp HHHHHHTCCCG-GGCCTTCEEEEEEEEEETTEEEEECSSSSCEEEEGGGGCSSCCSCHHHHC-CTTCEEEEEEEEEETTT
T ss_pred hhHHHhhhhHH-hcCCCCCEEEEEEEEEECcEEEEEeCCCceEEeehhhhhcccccChhhhh-ccCcEEEEEEEEEECCC
Confidence 34444455554 34689999999999999999999995 79999999999 67788888875 89999999999999999
Q ss_pred CceEeehhh
Q 010232 358 NDLILSERE 366 (514)
Q Consensus 358 ~rIiLS~K~ 366 (514)
++|.||+|.
T Consensus 81 ~~i~LS~K~ 89 (94)
T d3bzka4 81 NRVGLSMRM 89 (94)
T ss_dssp TEEEEESCT
T ss_pred CEEEEEEec
Confidence 999999985
No 13
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.32 E-value=1.7e-12 Score=105.59 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=61.7
Q ss_pred cCCCEEEEEEEEEECCeEEEEEC---CEEEEEecccc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhh
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIE---GLRAFLPKAEL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSERE 366 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~---Gi~gFVP~sel-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~ 366 (514)
+.|++++|+|++++++|+||+++ |++||||.+++ +.+..++.+.. .+||.+.|+|+++|+++++|.||+|+
T Consensus 10 ~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~-~~G~~v~~kV~~vd~~~~~i~LS~Kq 84 (84)
T d2ahob2 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVL-KENRKVIVKVIRVDRRKGTVDVSLKK 84 (84)
T ss_dssp CTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHT-CSSCEEECEEEEEETTTTEEEEESSS
T ss_pred CCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEe-ecccEEEEEEEEEECCCCEEEEEEcC
Confidence 48999999999999999999994 79999999999 67788888875 89999999999999999999999984
No 14
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]}
Probab=99.25 E-value=6.5e-14 Score=108.36 Aligned_cols=58 Identities=34% Similarity=0.553 Sum_probs=36.2
Q ss_pred EEEEEEecceEEEEECCCceEEEEEeecccc----ccccCcccccCCCCEEEEEEEEEeCCCe
Q 010232 381 GTVKKIYPYGAQIRIGDSNRSGLLHISNMSR----TRVTSVSDLLNEGERVKVLVVKSMFPDK 439 (514)
Q Consensus 381 G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~----~~v~~~~~~~kvGd~VkvkVi~vde~~r 439 (514)
|+|++|++|||||+|++ |++||||+|+|++ .++.+|++.|++||+|+|+|+++|+++|
T Consensus 1 G~V~~i~~fG~FV~l~~-g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~iD~~~r 62 (62)
T d1e3pa2 1 GSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 62 (62)
T ss_dssp CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSCC
T ss_pred CEEEEEEeceEEEEecC-CceEEEEHHHcccccccccccCHHHhcCCCCEEEEEEEEEcCCCC
Confidence 78999999999999998 8999999999985 4789999999999999999999986554
No 15
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.24 E-value=2.6e-12 Score=107.29 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=65.2
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccc----------cccCcccccCCCCEEEEEEEEEeCCCeEEE
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRT----------RVTSVSDLLNEGERVKVLVVKSMFPDKISL 442 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~----------~v~~~~~~~kvGd~VkvkVi~vde~~rI~L 442 (514)
.++|++|.|+|++++++|+||+|+. +..|+||+|+++|. ++.++++.|++||.|.|+|++++.++++.|
T Consensus 6 P~vGdiV~G~V~~v~~~g~~V~I~~-~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~dg~i~L 84 (95)
T d2nn6h1 6 GEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSL 84 (95)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTTEEEE
T ss_pred CCCCCEEEEEEEEEecCcEEEEeCC-CceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECCCCCEEE
Confidence 5789999999999999999999998 79999999999753 445677889999999999999998899999
Q ss_pred EEecC
Q 010232 443 SIADL 447 (514)
Q Consensus 443 SlK~l 447 (514)
|+|..
T Consensus 85 s~r~~ 89 (95)
T d2nn6h1 85 HTRSL 89 (95)
T ss_dssp ECCSS
T ss_pred Eeccc
Confidence 99864
No 16
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.13 E-value=1.1e-10 Score=94.49 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=64.1
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|.+++||+|.|+|.+++++|+||+++.+..|+||.+|+.... ...++
T Consensus 1 Y~Pk~Gd~V~G~V~~v~~~g~~V~i~~~~~g~l~~se~s~~~----------~~~~~----------------------- 47 (83)
T d2ba0a1 1 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMK----------PNKKP----------------------- 47 (83)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCC----------TTSCG-----------------------
T ss_pred CcCCCCCEEEEEEEEEECCEEEEecCCCeeEEEecccccccc----------cccCh-----------------------
Confidence 568999999999999999999999999999999999985320 00111
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHH
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~ 281 (514)
...|++||.|.|+|+++|.++++.||+|..
T Consensus 48 ----~~~~~vGd~V~~kV~~vd~~~~i~LS~k~~ 77 (83)
T d2ba0a1 48 ----NEVLDIGDAIIAKVLNIDPKMKVTLTMKDR 77 (83)
T ss_dssp ----GGTCCTTCEEEEEEEEECTTCCEEEECCSS
T ss_pred ----hhhcccccEEEEEEEEECCCCCEEEEecCC
Confidence 245899999999999999889999999864
No 17
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.11 E-value=1.1e-10 Score=95.45 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=65.8
Q ss_pred cccCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecccccccc
Q 010232 166 EYYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMS 245 (514)
Q Consensus 166 ~~~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~ 245 (514)
+.|.+++||+|.|+|++++++|+||+++.+.+|+||.+++.... ..+.
T Consensus 1 s~Y~Pk~Gdiv~G~V~~i~~~g~fV~i~~~~~gll~~s~~~~~~-----------~~~~--------------------- 48 (87)
T d2je6i1 1 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRS-----------INVG--------------------- 48 (87)
T ss_dssp SCCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC-----------CCTT---------------------
T ss_pred CcccCCCCCEEEEEEEEEECCEEEEEeCCCEEEEEehHHhCCce-----------eccc---------------------
Confidence 46789999999999999999999999999999999999985320 0000
Q ss_pred CCCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHH
Q 010232 246 GGSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281 (514)
Q Consensus 246 ~~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~ 281 (514)
.+....+++||.|.|+|+..|.++++.||+|..
T Consensus 49 ---~~~~~~~~~Gd~v~~kV~~vd~~~~i~LS~k~~ 81 (87)
T d2je6i1 49 ---EDLRRYLDVGDYVIARIENFDRSIDPVLSVKGK 81 (87)
T ss_dssp ---CCCSSSCCTTCEEEEEEEEEETTEEEEEECCST
T ss_pred ---cccchhhcccceEEEEEEEECCCCCEEEEEecC
Confidence 011356899999999999999889999998754
No 18
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=99.05 E-value=3e-10 Score=92.90 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=65.6
Q ss_pred ccCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccC
Q 010232 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (514)
Q Consensus 167 ~~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~ 246 (514)
.|.+++||+|.|+|++++++|+||+|+....|+||.+|+.... .+.+
T Consensus 2 ~Y~Pk~GdvV~G~V~~v~~~g~fV~i~~~~~g~l~~se~~~~~-----------~~~~---------------------- 48 (88)
T d2z0sa1 2 IYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRP-----------FNPA---------------------- 48 (88)
T ss_dssp CCCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSC-----------CCTT----------------------
T ss_pred CcCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEehHHhCccc-----------cccc----------------------
Confidence 4778999999999999999999999999999999999985321 0000
Q ss_pred CCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHH
Q 010232 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281 (514)
Q Consensus 247 ~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~ 281 (514)
..+....+++||.|.|+|+++|.++++.||+|..
T Consensus 49 -~~~~~~~~~vGd~V~~kV~~vd~~~~i~Ls~k~~ 82 (88)
T d2z0sa1 49 -VDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGE 82 (88)
T ss_dssp -TTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSS
T ss_pred -ccchhhhcccCcEEEEEEEEECCCCCEEEEEecC
Confidence 0112456899999999999999889999998764
No 19
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=99.02 E-value=5e-10 Score=91.78 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=58.4
Q ss_pred CCceEEEEEEEEecceEEEEECCCceEEEEEeecccccccc------------CcccccCCCCEEEEEEEEEe-CCCeEE
Q 010232 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVT------------SVSDLLNEGERVKVLVVKSM-FPDKIS 441 (514)
Q Consensus 375 ~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~------------~~~~~~kvGd~VkvkVi~vd-e~~rI~ 441 (514)
.|+.++|+|++|+++|+||+|.+.+++||||+|+|.+++.. +....|++||+|+|+|+++| +++||.
T Consensus 3 ~~~~F~g~Is~v~~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~~~~~Gd~V~V~v~~vd~~~r~I~ 82 (87)
T d2ix0a3 3 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSII 82 (87)
T ss_dssp SCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTTEEE
T ss_pred CCCEEEEEEEEEEcCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccEEEECCCEEEEEEEEEecccCeEE
Confidence 47889999999999999999976579999999999987532 23457999999999999999 788886
Q ss_pred E
Q 010232 442 L 442 (514)
Q Consensus 442 L 442 (514)
+
T Consensus 83 ~ 83 (87)
T d2ix0a3 83 A 83 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 20
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.01 E-value=3.1e-10 Score=96.20 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=58.6
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEecccc-cccc-----------CChhhHhhhcCCEEEEEEEEEeCCCCc---
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRV-----------NNFTELKEKVGRRMYVQITRINEDTND--- 359 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel-~~~i-----------~~~~el~~~VGq~V~vkVl~vD~e~~r--- 359 (514)
+.|+++.|+|++++++|+||++++++||||.++| +.++ .++... +.+||.|+|+|++||.++++
T Consensus 2 ~~gei~~g~V~~v~~~G~FVel~~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~-~~~Gd~v~vkV~~vd~~~~~~~~ 80 (106)
T d1go3e1 2 EMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKV-LEIGDYVRARIVAISLKAERKRG 80 (106)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCE-ECTTCEEEEEEEEEECCC-----
T ss_pred CCCCEEEEEEEEEeeeEEEEEeeCeEEEEEeecccCceeeeccceeEEeecccccc-eeecceEEEEEEEEchhhccccC
Confidence 4799999999999999999999999999999999 4443 233333 37999999999999988876
Q ss_pred --eEeehhhh
Q 010232 360 --LILSEREA 367 (514)
Q Consensus 360 --IiLS~K~~ 367 (514)
+.||+|+.
T Consensus 81 ~~i~ls~K~~ 90 (106)
T d1go3e1 81 SKIALTMRQP 90 (106)
T ss_dssp CEEEEECCST
T ss_pred ceeecccccC
Confidence 67788753
No 21
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.00 E-value=1e-10 Score=101.27 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=63.1
Q ss_pred hhcCCCEEEEEEEEEECCeEEEEEC--CEEEEEeccccc-c-ccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhh
Q 010232 293 IKQLNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAELL-S-RVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREA 367 (514)
Q Consensus 293 ~~k~GeiV~GkV~~v~~~G~fVdi~--Gi~gFVP~sel~-~-~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~ 367 (514)
.++.|+++.|+|+++.++|+||+++ +++||||.+++. . +..++.+.+ ++||.|.|+|+++|+++++|.||+|+.
T Consensus 18 ~l~~G~iv~G~V~~i~~~G~~V~lg~~~~~G~l~~~els~~~~~~~~~~~~-~vGq~v~~~V~~vd~~~~~i~LS~k~~ 95 (119)
T d1wi5a_ 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKL-KVGQYLNCIVEKVKGNGGVVSLSVGHS 95 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCC-CTTCEEEEEEEECCTTSCEEEEECCCC
T ss_pred hcCCCCEEEEEEEEEeccEEEEEEeccccceEEeHHHhccccccCCHHHhc-ccceEEEEEEEEEeCCCCEEEEEecHH
Confidence 4579999999999999999999994 699999999993 2 344454432 799999999999999999999999864
No 22
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.99 E-value=1.3e-09 Score=89.58 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=58.4
Q ss_pred CCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc----------cCcccccCCCCEEEEEEEEEe-CCCeEEE
Q 010232 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV----------TSVSDLLNEGERVKVLVVKSM-FPDKISL 442 (514)
Q Consensus 375 ~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v----------~~~~~~~kvGd~VkvkVi~vd-e~~rI~L 442 (514)
+|++++|+|++++++|+||+++. ++||||+++|.+++. .+..+.+++||.|+|+|++++ ++++|..
T Consensus 3 ~Gev~~g~I~~v~~~G~fv~lg~--~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~i~~ 79 (91)
T d1y14b1 3 KGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 79 (91)
T ss_dssp TTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEEcC--eEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEEecccCccEE
Confidence 69999999999999999999974 799999999987755 344567999999999999998 8888865
No 23
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.82 E-value=7e-09 Score=85.62 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=57.7
Q ss_pred CCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccc------------cCcccccCCCCEEEEEEEEEe-CCCeEE
Q 010232 375 EGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRV------------TSVSDLLNEGERVKVLVVKSM-FPDKIS 441 (514)
Q Consensus 375 ~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v------------~~~~~~~kvGd~VkvkVi~vd-e~~rI~ 441 (514)
.|++++|+|++++++|+||+++. ++||+|.++|.+++. .+....+++||.|++||+.++ +.++|.
T Consensus 4 ~Gev~~g~V~~v~~~G~fv~lg~--~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~I~ 81 (94)
T d2c35b1 4 KGEVVDAVVTQVNKVGLFTEIGP--MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 81 (94)
T ss_dssp TTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEecC--ceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEEEecCcCcce
Confidence 69999999999999999999974 799999999998753 344567999999999999998 888886
Q ss_pred E
Q 010232 442 L 442 (514)
Q Consensus 442 L 442 (514)
.
T Consensus 82 ~ 82 (94)
T d2c35b1 82 A 82 (94)
T ss_dssp E
T ss_pred E
Confidence 4
No 24
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.80 E-value=4.7e-09 Score=86.07 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=67.6
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
.++|++|-|+|++++.+|+||+|+. ...|+||++++. .++++.+..+++||.|.|+|.+++.++++.||+.+.
T Consensus 4 P~~GD~ViG~V~~~~~~~~~VdI~s-~~~a~L~~~~f~-g~~k~~r~~l~~GD~V~arV~~v~~~~~~~Lscvd~ 76 (88)
T d2nn6g1 4 PVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANKDMEPEMVCIDS 76 (88)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCTTSCCEEECSBT
T ss_pred CCCCCEEEEEEEEEeCCeEEEEcCC-CeeEEEeHHHcC-ccccccCcccCCCCEEEEEEEEeCCCCCEEEEEEcc
Confidence 5799999999999999999999998 799999999995 578889999999999999999999889999999764
No 25
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.68 E-value=1.4e-08 Score=84.16 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=63.6
Q ss_pred ccCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccC
Q 010232 167 YYEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSG 246 (514)
Q Consensus 167 ~~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~ 246 (514)
-|.+++||+|.|+|+++.++|++|+|+...+|+||.+++.... .. +. ... ..+...+
T Consensus 3 ~Y~P~vGdiV~G~V~~v~~~g~~V~I~~~~~g~l~is~i~~~~---~~----~r-r~~-------------~~~~~~~-- 59 (95)
T d2nn6h1 3 RYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPG---GE----LR-RRS-------------AEDELAM-- 59 (95)
T ss_dssp CCCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC----------------------------------CHHH--
T ss_pred cccCCCCCEEEEEEEEEecCcEEEEeCCCceEEEEHHHccccc---cc----cc-ccc-------------chhhhhh--
Confidence 4678999999999999999999999999899999999985210 00 00 000 0000000
Q ss_pred CCCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHH
Q 010232 247 GSGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281 (514)
Q Consensus 247 ~~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~ 281 (514)
...+++||.|.|+|+.++.+|++.||+|.+
T Consensus 60 -----~~~~~~Gd~V~~kV~~v~~dg~i~Ls~r~~ 89 (95)
T d2nn6h1 60 -----RGFLQEGDLISAEVQAVFSDGAVSLHTRSL 89 (95)
T ss_dssp -----HHHSCSSCEECCEEEEEETTTEEEEECCSS
T ss_pred -----hhhcccccEEEEEEEEECCCCCEEEEeccc
Confidence 234899999999999999999999998754
No 26
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=98.60 E-value=4.1e-08 Score=80.61 Aligned_cols=74 Identities=9% Similarity=0.005 Sum_probs=68.6
Q ss_pred CCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEecC
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIADL 447 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK~l 447 (514)
.++|++|-|+|+++...|+||+|+. ...|++|.+........+.+..|++||.|.|+|.+++.++++.||+++.
T Consensus 5 P~~gD~ViG~V~~~~~~~~~vdI~~-~~~~~L~~~~~f~g~~k~~r~~l~~GDlV~arV~~v~~~~~~~Lsc~~~ 78 (90)
T d2ja9a1 5 PSVNDFVIGVIIGTFSDSYKVSLQN-FSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDS 78 (90)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESST-TSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCT
T ss_pred CCCCCEEEEEEEEEeCCcEEEEcCC-cchhhhhhhhccCccccccCCccCCCCEEEEEEEEECCCCCEEEEEecc
Confidence 4799999999999999999999997 6899999999998999999999999999999999999889999998643
No 27
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.52 E-value=1.9e-07 Score=76.29 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=62.6
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|.+++||+|.|+|+++..++++|||+....|+||.+++....
T Consensus 2 Y~P~~GD~ViG~V~~~~~~~~~VdI~s~~~a~L~~~~f~g~~-------------------------------------- 43 (88)
T d2nn6g1 2 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGAT-------------------------------------- 43 (88)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCS--------------------------------------
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEcCCCeeEEEeHHHcCccc--------------------------------------
Confidence 578999999999999999999999999999999998873210
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehH
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRR 280 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk 280 (514)
.+-++.+++||.|.|+|...+.++++.||...
T Consensus 44 -k~~r~~l~~GD~V~arV~~v~~~~~~~Lscvd 75 (88)
T d2nn6g1 44 -KRNRPNVQVGDLIYGQFVVANKDMEPEMVCID 75 (88)
T ss_dssp -SCSSSSSCTTCEEEEEEEECCTTSCCEEECSB
T ss_pred -cccCcccCCCCEEEEEEEEeCCCCCEEEEEEc
Confidence 01146689999999999999999999998753
No 28
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]}
Probab=98.52 E-value=9.4e-10 Score=84.50 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=35.0
Q ss_pred EEEEEEECCeEEEEEC-CEEEEEeccccc-----cccCChhhHhhhcCCEEEEEEEEEeCCC
Q 010232 302 VKFTEWNTGGLLTRIE-GLRAFLPKAELL-----SRVNNFTELKEKVGRRMYVQITRINEDT 357 (514)
Q Consensus 302 GkV~~v~~~G~fVdi~-Gi~gFVP~sel~-----~~i~~~~el~~~VGq~V~vkVl~vD~e~ 357 (514)
|+|+++.++|+||++. |++||||.|+|. .++.++++.. .+||+|+|+|+++|+++
T Consensus 1 G~V~~i~~fG~FV~l~~g~~Glihiseis~~~~~~~v~~~~~~~-~~G~~V~vkV~~iD~~~ 61 (62)
T d1e3pa2 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVL-GVGQKVQVEIAEIDSRG 61 (62)
T ss_dssp CBEEECC-CSCEECCC---CCCCC-------------------C-CSSCBCCCCCCCCCSSC
T ss_pred CEEEEEEeceEEEEecCCceEEEEHHHcccccccccccCHHHhc-CCCCEEEEEEEEEcCCC
Confidence 7899999999999995 799999999993 3567787765 89999999999999764
No 29
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.42 E-value=3.4e-07 Score=74.64 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCEEEEEEEEEECCeEEEEECCEEEEEecccc-ccccCChhh---------HhhhcCCEEEEEEEEEeCCCCceE
Q 010232 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL-LSRVNNFTE---------LKEKVGRRMYVQITRINEDTNDLI 361 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel-~~~i~~~~e---------l~~~VGq~V~vkVl~vD~e~~rIi 361 (514)
.|+++.|+|++++++|+||+++.++||||.++| +...-+... ....+|+.|+++|+.+|.+++++.
T Consensus 3 ~Gev~~g~I~~v~~~G~fv~lg~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~i~ 78 (91)
T d1y14b1 3 KGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIH 78 (91)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEEcCeEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEEecccCccE
Confidence 699999999999999999999889999999999 332111110 123689999999999998887763
No 30
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=98.42 E-value=3.1e-07 Score=74.80 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=53.9
Q ss_pred CCCEEEEEEEEEECCeEEEEEC--CEEEEEecccc-ccccC------------ChhhHhhhcCCEEEEEEEEEeCCCCce
Q 010232 296 LNEPIEVKFTEWNTGGLLTRIE--GLRAFLPKAEL-LSRVN------------NFTELKEKVGRRMYVQITRINEDTNDL 360 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~G~fVdi~--Gi~gFVP~sel-~~~i~------------~~~el~~~VGq~V~vkVl~vD~e~~rI 360 (514)
.|+..+|+|++++++|+||++. +++||||.+.| +.+.. +.+. .+++||+|+|+|+++|+++++|
T Consensus 3 ~~~~F~g~Is~v~~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~-~~~~Gd~V~V~v~~vd~~~r~I 81 (87)
T d2ix0a3 3 TDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET-VYKVTDVIDVTIAEVRMETRSI 81 (87)
T ss_dssp SCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEE-EEETTCEEEEEEEEEETTTTEE
T ss_pred CCCEEEEEEEEEEcCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccE-EEECCCEEEEEEEEEecccCeE
Confidence 4788999999999999999994 68999999999 43321 1111 2379999999999999999998
Q ss_pred Ee
Q 010232 361 IL 362 (514)
Q Consensus 361 iL 362 (514)
.+
T Consensus 82 ~~ 83 (87)
T d2ix0a3 82 IA 83 (87)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 31
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=98.38 E-value=9.9e-07 Score=69.28 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=55.1
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCC--eEEEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPD--KISLS 443 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~--rI~LS 443 (514)
.-++|+++.|+|.++.+..++|+|+ +.+|+||.++.. |.+.|++||+|+|.|.+|+ ..+ +|.||
T Consensus 5 ~~~~geiv~G~V~r~~~~~~~Vdlg--~~eaiLp~~eqi------p~E~~~~Gdrik~~i~~V~~~~kgpqI~lS 71 (72)
T d1hh2p1 5 SELKGTVTTAEVIRVMGEWADIRIG--KLETRLPKKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVS 71 (72)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEET--TEEEEEEGGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEE
T ss_pred hhccCcEEEEEEEEEcCCCEEEEEC--CcEEECCHHHcC------CCCCCCCCCEEEEEEEEEEEcCCCCeEEEe
Confidence 3478999999999999999999998 589999999976 5689999999999999996 333 55555
No 32
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=98.36 E-value=9.6e-07 Score=69.35 Aligned_cols=64 Identities=22% Similarity=0.172 Sum_probs=53.9
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCC--ceEeeh
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTN--DLILSE 364 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~--rIiLS~ 364 (514)
+.|++++|+|.++.++.++|++++++|+||.+++... +. +.+|++|+|.|.+|+...+ +|+||+
T Consensus 7 ~~geiv~G~V~r~~~~~~~Vdlg~~eaiLp~~eqip~-----E~-~~~Gdrik~~i~~V~~~~kgpqI~lSR 72 (72)
T d1hh2p1 7 LKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWIPG-----EE-IKAGDLVKVYIIDVVKTTKGPKILVSR 72 (72)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGSCTT-----CC-CCTTCEEEEEEEEEEEETTEEEEEEES
T ss_pred ccCcEEEEEEEEEcCCCEEEEECCcEEECCHHHcCCC-----CC-CCCCCEEEEEEEEEEEcCCCCeEEEeC
Confidence 5899999999999999999999999999999998321 11 2699999999999976554 678875
No 33
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=98.34 E-value=1e-06 Score=72.04 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=62.0
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeeccccccccCC
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIAMSGG 247 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~l~~~ 247 (514)
|.+++||+|.|+|+.+..++++||||....|+||.++..+..
T Consensus 3 Y~P~~gD~ViG~V~~~~~~~~~vdI~~~~~~~L~~~~~f~g~-------------------------------------- 44 (90)
T d2ja9a1 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNA-------------------------------------- 44 (90)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTC--------------------------------------
T ss_pred ccCCCCCEEEEEEEEEeCCcEEEEcCCcchhhhhhhhccCcc--------------------------------------
Confidence 568999999999999999999999999889988866654320
Q ss_pred CCCCCCcccCCCEEEEEEEEEcCCCcEEEEehHH
Q 010232 248 SGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRL 281 (514)
Q Consensus 248 ~~~~~~~~~vGd~V~v~Vl~~d~~grliLS~kk~ 281 (514)
..+-++.+.+||.|.|+|...+.++.+.||.+-+
T Consensus 45 ~k~~r~~l~~GDlV~arV~~v~~~~~~~Lsc~~~ 78 (90)
T d2ja9a1 45 SKKNRPTLQVGDLVYARVCTAEKELEAEIECFDS 78 (90)
T ss_dssp CSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCT
T ss_pred ccccCCccCCCCEEEEEEEEECCCCCEEEEEecc
Confidence 0011466899999999999999999999997543
No 34
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.29 E-value=9.6e-07 Score=72.43 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=54.8
Q ss_pred CCCEEEEEEEEEECCeEEEEECCEEEEEeccccc-cc-c-CCh---------hhHhhhcCCEEEEEEEEEeCCCCceE--
Q 010232 296 LNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAELL-SR-V-NNF---------TELKEKVGRRMYVQITRINEDTNDLI-- 361 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~-~~-i-~~~---------~el~~~VGq~V~vkVl~vD~e~~rIi-- 361 (514)
.|++++|+|++++++|+||+++.++||||.++|. .. . .+. ......+|+.|+++|+.+|.+.+++.
T Consensus 4 ~Gev~~g~V~~v~~~G~fv~lg~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~v~~~~~~I~~i 83 (94)
T d2c35b1 4 KGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAI 83 (94)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEEEEEEEeeEEEEEecCceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEEEecCcCcceEE
Confidence 6999999999999999999998899999999993 32 1 110 11123689999999999988887764
Q ss_pred eehhh
Q 010232 362 LSERE 366 (514)
Q Consensus 362 LS~K~ 366 (514)
.++++
T Consensus 84 gt~~~ 88 (94)
T d2c35b1 84 GSLMD 88 (94)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 44544
No 35
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.09 E-value=4.5e-06 Score=72.15 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=62.1
Q ss_pred CCCCceEEEEEEEEecceEEEEECCC-------ceEEEEEeeccc--cccccCcccccCCCCEEEEEEEEEeCC-CeEEE
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDS-------NRSGLLHISNMS--RTRVTSVSDLLNEGERVKVLVVKSMFP-DKISL 442 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~-------gi~GLvh~Sels--~~~v~~~~~~~kvGd~VkvkVi~vde~-~rI~L 442 (514)
.++|++|.|+|+++.+..++|+|... .+.|++|.+++. .....++.+.|++||.|+|+|+++.+. ..+.|
T Consensus 5 P~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~te~d~~~m~~~fr~GDiV~A~Vis~~~~~~~~~L 84 (125)
T d2nn6i1 5 PDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLL 84 (125)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccchhhhhhHHHhcCCCCEEEEEEEEccCCCccEEE
Confidence 47899999999999999999999321 477999999984 345567889999999999999998654 46999
Q ss_pred EEec
Q 010232 443 SIAD 446 (514)
Q Consensus 443 SlK~ 446 (514)
|+++
T Consensus 85 st~~ 88 (125)
T d2nn6i1 85 TTAE 88 (125)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9965
No 36
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.92 E-value=1.2e-05 Score=63.49 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=52.0
Q ss_pred CCCceEEEEEEEEecce----EEEEECC--CceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CC--CeEEEE
Q 010232 374 REGTLLEGTVKKIYPYG----AQIRIGD--SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FP--DKISLS 443 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~~G----aFV~I~~--~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~--~rI~LS 443 (514)
++|+++.|+|.++.... ++|+|+. .+++|+||.+|.- |.+.|++||.|+|.|.+|+ .. -.|.||
T Consensus 3 r~geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eqi------p~E~y~~Gdrik~~i~~V~~~~kGp~IilS 75 (76)
T d2asba1 3 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLS 75 (76)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEE
T ss_pred ccceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHcC------CCcccCCCCEEEEEEEEEEecCCCCEEEEe
Confidence 68999999999997543 7999972 1699999999975 5689999999999999996 22 256665
No 37
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.87 E-value=1.4e-05 Score=63.25 Aligned_cols=64 Identities=27% Similarity=0.310 Sum_probs=50.9
Q ss_pred CCCCEEEEEEEEEeCC----eEEEEeC---CceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecccccc
Q 010232 171 KPGDFVIGVVVSGNEN----KLDVNVG---ADLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDDDAIA 243 (514)
Q Consensus 171 k~GdiV~G~Vv~v~~~----Gv~VdIG---~k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~d~~~ 243 (514)
+.|++|+|+|.+++.. .++||+| .+.+|+||.+|..|.
T Consensus 3 r~geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eqip~----------------------------------- 47 (76)
T d2asba1 3 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG----------------------------------- 47 (76)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT-----------------------------------
T ss_pred ccceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHcCCC-----------------------------------
Confidence 5799999999999754 3899998 368999999998653
Q ss_pred ccCCCCCCCCcccCCCEEEEEEEEEcC---CCcEEEEe
Q 010232 244 MSGGSGPGRPVVETGTVLFAEVLGRTL---SGRPLLST 278 (514)
Q Consensus 244 l~~~~~~~~~~~~vGd~V~v~Vl~~d~---~grliLS~ 278 (514)
..|+.||.|+|.|..+.. .-+++||+
T Consensus 48 ---------E~y~~Gdrik~~i~~V~~~~kGp~IilSR 76 (76)
T d2asba1 48 ---------ESYEHGNRLRCYVVGVTRGAREPLITLSR 76 (76)
T ss_dssp ---------CCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred ---------cccCCCCEEEEEEEEEEecCCCCEEEEeC
Confidence 348999999999998642 33567774
No 38
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]}
Probab=97.30 E-value=0.00028 Score=56.79 Aligned_cols=57 Identities=28% Similarity=0.546 Sum_probs=48.6
Q ss_pred ceEEEEEEEEec--ceEEEEECCCceEEEEEeeccccccc---------cCcccccCCCCEEEEEEEEE
Q 010232 377 TLLEGTVKKIYP--YGAQIRIGDSNRSGLLHISNMSRTRV---------TSVSDLLNEGERVKVLVVKS 434 (514)
Q Consensus 377 ~iV~G~V~~I~~--~GaFV~I~~~gi~GLvh~Sels~~~v---------~~~~~~~kvGd~VkvkVi~v 434 (514)
.++.|+|.+|.+ .+|||+|+. +..||+|.+++...+. .+..+.+++||.|-|.|.+-
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~-~k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke 69 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKE 69 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSS-SSCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEEC
T ss_pred CcEEEEEEEecCCceEEEEEeCC-CccceeEecccceeeeccccccccccchhhhccCCCeEEEEEeec
Confidence 589999999998 699999998 8999999999876543 24567799999999999863
No 39
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.00 E-value=0.0012 Score=56.33 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCC--------ceeEEeecccccccccchhhhhhhhhchhhhHHhhhccceeeecc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGA--------DLLGTMLTKEVLPLYDKEMDFLLCDLKKDAEEFMVRGKMGIVKDD 239 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~--------k~~G~Lp~sEl~p~~~~e~~~~l~D~~~~~~e~~~~g~~~v~~~~ 239 (514)
+-+++||+|.|+|+++....+.|+|.. ...|+++.+++... +.
T Consensus 3 ~vP~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~t-----------------------------e~ 53 (125)
T d2nn6i1 3 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRAT-----------------------------EK 53 (125)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTC-----------------------------SS
T ss_pred cCCCCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccc-----------------------------hh
Confidence 457899999999999999999999832 34455555554211 00
Q ss_pred ccccccCCCCCCCCcccCCCEEEEEEEEEcCC-CcEEEEehHH
Q 010232 240 DAIAMSGGSGPGRPVVETGTVLFAEVLGRTLS-GRPLLSTRRL 281 (514)
Q Consensus 240 d~~~l~~~~~~~~~~~~vGd~V~v~Vl~~d~~-grliLS~kk~ 281 (514)
+...+ ...|++||.|.|+|++.... ..+.||++..
T Consensus 54 d~~~m-------~~~fr~GDiV~A~Vis~~~~~~~~~Lst~~~ 89 (125)
T d2nn6i1 54 DKVEI-------YKSFRPGDIVLAKVISLGDAQSNYLLTTAEN 89 (125)
T ss_dssp CCCCG-------GGTCCSSSEEEEEEEEEETTTTEEEEECCSS
T ss_pred hhhhH-------HHhcCCCCEEEEEEEEccCCCccEEEEecCC
Confidence 11111 24589999999999987554 3477998654
No 40
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]}
Probab=95.62 E-value=0.02 Score=45.55 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=30.1
Q ss_pred CEEEEEEEEEeC--CeEEEEeCCceeEEeecccccc
Q 010232 174 DFVIGVVVSGNE--NKLDVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 174 diV~G~Vv~v~~--~Gv~VdIG~k~~G~Lp~sEl~p 207 (514)
++..|+|.+|.+ .++|||+|.+..||||.+++.+
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~~k~gFL~~~di~~ 37 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAR 37 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSSSSCEEEEGGGSCG
T ss_pred CcEEEEEEEecCCceEEEEEeCCCccceeEecccce
Confidence 467899999988 6899999999999999999854
No 41
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]}
Probab=93.24 E-value=0.15 Score=39.64 Aligned_cols=74 Identities=24% Similarity=0.257 Sum_probs=57.3
Q ss_pred CCCCceEEEEEEEEecceEEEEECCC-ceEEEEEee-ccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEEecCc
Q 010232 373 LREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLHIS-NMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSIADLE 448 (514)
Q Consensus 373 l~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh~S-els~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSlK~l~ 448 (514)
..+|++.+|+|. +.++-.+|.+.+. |.++++-.+ ++-.++..++++.+ +|.+|+|+|+.+| -++-|++.-|...
T Consensus 6 PnigdVtkGiVy-~kd~~fyV~L~dY~g~ea~l~dy~~~~~d~~~klk~kL-VGKtIkvqVIR~d~lKGYIDVr~~~~~ 82 (85)
T d1luza_ 6 PNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 82 (85)
T ss_dssp CCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCCceeeeEEE-EeCCEEEEEecCCCCceEEeeehhhhhhHHHHHHHHHh-cCceEEEEEEEEcceeeEEEehhhhhh
Confidence 468999999887 5667778999876 788987432 23334556666666 7999999999999 8899999998764
No 42
>d3d31a1 b.40.6.3 (A:230-348) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=92.64 E-value=1.4 Score=34.81 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=65.2
Q ss_pred EEEEEEEEEECCeEEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehhhhhhhccCCCCce
Q 010232 299 PIEVKFTEWNTGGLLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSEREAWATLNLREGTL 378 (514)
Q Consensus 299 iV~GkV~~v~~~G~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K~~~~~~~l~~G~i 378 (514)
++.|+|.+...+.+.++++++...+|.. + .+|+.+.+.| .++ .|.++.... .-.....
T Consensus 4 ~l~g~v~~~~~~~~~v~~~~~~l~~~~~-~------------~~g~~v~~~i---RPE--~i~l~~~~~----~~~~~N~ 61 (119)
T d3d31a1 4 VLKGRVISAEQGLLRIRVGEVVIDAAGD-M------------EVGDQVYAFL---RPE--NIALSKSST----QSSIRNS 61 (119)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEESS-C------------CTTCEEEEEE---CGG--GEEEESSCC----CBSCSEE
T ss_pred EEEEEEEEecCCEEEEEECCEEEECCCC-C------------CCCCEEEEEE---chH--Hcccccccc----ccccceE
Confidence 6899999999999999998887766621 1 3788876544 354 355554321 1122347
Q ss_pred EEEEEEEEecceEEEEEC--C-CceEEEEEeeccccccccCcccccCCCCEEEEEE
Q 010232 379 LEGTVKKIYPYGAQIRIG--D-SNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLV 431 (514)
Q Consensus 379 V~G~V~~I~~~GaFV~I~--~-~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkV 431 (514)
+.|+|..+...|..+.+. . ..+...+...... ...+++||+|.+.+
T Consensus 62 l~g~V~~~~~~G~~~~v~l~~g~~~~~~v~~~~~~-------~~~l~~G~~V~v~~ 110 (119)
T d3d31a1 62 LQGRVTEAWVLGALVRVKVDCGVPLNVLITRRSAE-------EMELSPGVQIYARF 110 (119)
T ss_dssp EEEEEEEEEECSSEEEEEEESSSEEEEEEETTHHH-------HSCCCTTCEEEEEE
T ss_pred EEEEEEEEEECCCeEEEEEEeCCEEEEEEecCchh-------hcCcCCCCEEEEEE
Confidence 999999999988765542 1 0222222211111 12478999998865
No 43
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]}
Probab=92.02 E-value=0.13 Score=40.94 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=48.1
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCC-ceEEEEE-eeccccccccCcccccCCCCEEEEEEEEEe
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDS-NRSGLLH-ISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~-gi~GLvh-~Sels~~~v~~~~~~~kvGd~VkvkVi~vd 435 (514)
++.+|++.+|+|. +.++-.+|.+.++ |.++++- --++-.++..++++.+ +|.+|+|+|+.+|
T Consensus 29 ~~~~G~V~kGiVy-~rd~~fyV~L~dY~g~eail~dY~n~~~dr~~klkkkL-VGKTIkVqVIRvD 92 (102)
T d1jjga_ 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRAD 92 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEEC
T ss_pred ccCCCcEeeeEEE-EeCCEEEEEecCCCCceeeeeehhhhhHHHHHHHHHHh-cCceEEEEEEEec
Confidence 7899999999887 5677788999876 7888853 2344445666676766 7999999999876
No 44
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]}
Probab=88.32 E-value=1.9 Score=31.68 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=40.6
Q ss_pred EEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEE
Q 010232 380 EGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444 (514)
Q Consensus 380 ~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSl 444 (514)
.|+|+-..+ || ||...+ |-+-|+|+|.+..... ..+..||+|...+.. .+++.-...+
T Consensus 3 ~G~Vk~fn~~kGfG-FI~~d~-g~DiF~H~s~l~~~~~----~~L~~G~~V~f~~~~-~~~G~~A~~V 63 (66)
T d1c9oa_ 3 RGKVKWFNNEKGYG-FIEVEG-GSDVFVHFTAIQGEGF----KTLEEGQEVSFEIVQ-GNRGPQAANV 63 (66)
T ss_dssp EEEEEEEETTTTEE-EEEETT-EEEEEEEGGGBCSSSC----CCCCTTCEEEEEEEE-ETTEEEEEEE
T ss_pred CeEEEEEECCCCEE-EEEecC-CceEEEEehhcccccC----CcCCCCCEEEEEEEE-CCCCCEEEEE
Confidence 588888753 66 466676 7899999999964321 357899999998864 3555444444
No 45
>d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=87.77 E-value=1.1 Score=33.68 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=27.3
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeE
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLG 198 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G 198 (514)
-.++.|++=+|-+++....|+|||||....+
T Consensus 6 g~p~vGEiReG~~~rr~~~g~~vDiGlD~la 36 (71)
T d1k3ra1 6 GKPVTGEYRQGLTVKRVKKGTLVDIGADKLA 36 (71)
T ss_dssp SSCCTTCEEEEEEEEECSSSEEEESSSSCEE
T ss_pred CCCcccceeeEEEEEecCCcEEEEecCCcee
Confidence 3588999999999999999999999976555
No 46
>d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=83.56 E-value=1.5 Score=32.94 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=39.8
Q ss_pred cCCCCceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEE
Q 010232 372 NLREGTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~v 434 (514)
..++|++-+|.+.+....|+||+|+- +-+.... ..+.+|+++.++|.++
T Consensus 7 ~p~vGEiReG~~~rr~~~g~~vDiGl---D~la~~k-----------~~~~~~~r~tfrIvs~ 55 (71)
T d1k3ra1 7 KPVTGEYRQGLTVKRVKKGTLVDIGA---DKLALCR-----------EKLTVNRIMSFRVVRL 55 (71)
T ss_dssp SCCTTCEEEEEEEEECSSSEEEESSS---SCEEECS-----------SCCCSSCEEEEEEEEC
T ss_pred CCcccceeeEEEEEecCCcEEEEecC---Cceeeee-----------cccccCcEEEEEEEEc
Confidence 47899999999999999999999974 3333322 3478999999999876
No 47
>d1luza_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Vaccinia virus [TaxId: 10245]}
Probab=82.15 E-value=2.3 Score=32.75 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=46.6
Q ss_pred cCCCEEEEEEEEEECCeEEEEE---CCEEEEEecc-cc-ccccCChhhHhhhcCCEEEEEEEEEeCCCCceEeehh
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKA-EL-LSRVNNFTELKEKVGRRMYVQITRINEDTNDLILSER 365 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi---~Gi~gFVP~s-el-~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIiLS~K 365 (514)
..|++.+|.|. ++++-+.|.+ .|.+|++-.. ++ .+++.+.++- .+|..|+++|+++|.-++-|-+..|
T Consensus 7 nigdVtkGiVy-~kd~~fyV~L~dY~g~ea~l~dy~~~~~d~~~klk~k--LVGKtIkvqVIR~d~lKGYIDVr~~ 79 (85)
T d1luza_ 7 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDK--LVGKTVKVKVIRVDYTKGYIDVNYK 79 (85)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHH--HTTCEEEEEEEEEETTTTEEEEEEE
T ss_pred CCCceeeeEEE-EeCCEEEEEecCCCCceEEeeehhhhhhHHHHHHHHH--hcCceEEEEEEEEcceeeEEEehhh
Confidence 46788888775 3455666777 3688887643 22 2344444443 5999999999999998887766654
No 48
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=81.32 E-value=3.6 Score=30.33 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=39.6
Q ss_pred eEEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEE
Q 010232 378 LLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISL 442 (514)
Q Consensus 378 iV~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~L 442 (514)
.++|+|+-..+ || |+.-.+.+-+-|+|+|.+.... ...+++||.|...+.. .+++.-..
T Consensus 3 r~~G~Vk~f~~~kGfG-FI~~d~g~~diFvH~s~l~~~~----~~~L~~G~~V~f~~~~-~~~G~~A~ 64 (69)
T d1mjca_ 3 KMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAIQNDG----YKSLDEGQKVSFTIES-GAKGPAAG 64 (69)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTSCCCEEEEGGGBCCTT----TCCCCTTCEEEEEEEC-CSSSCEEE
T ss_pred CEEEEEEEEeCCCCEE-EEEEcCCCccEEEEhHHhcccC----CCcCCCCCEEEEEEEe-CCCCcEEE
Confidence 47899998753 56 5555542578999999997432 2347889999998753 24444333
No 49
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.79 E-value=3.4 Score=31.38 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=41.2
Q ss_pred ceEEEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCe
Q 010232 377 TLLEGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDK 439 (514)
Q Consensus 377 ~iV~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~r 439 (514)
..+.|+|+-..+ || ||.-.+.+-+-|+|.|.|...-....-..+..||.|...+.. .++++
T Consensus 7 ~r~~G~VKwfn~~KGfG-FI~~ddg~~DvFvH~s~i~~~g~~~~~~~L~~G~~V~f~~~~-~~~G~ 70 (79)
T d1h95a_ 7 TKVLGTVKWFNVRNGYG-FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE-GEKGA 70 (79)
T ss_dssp EEEEEEEEEEETTTTEE-EEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE-CSSSE
T ss_pred CcccEEEEEEcCCCCeE-EEEECCCCccEEEEhhHcccCCCcceeeecCCCCEEEEEEEe-CCCCC
Confidence 457899988753 66 555544257899999999754322223457899999998764 34444
No 50
>d1jjga_ b.40.4.5 (A:) Viral structural mimic of eIF2alpha {Myxoma virus, m156r [TaxId: 10273]}
Probab=77.60 E-value=3.3 Score=32.61 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=40.9
Q ss_pred cCCCEEEEEEEEEECCeEEEEE---CCEEEEEecc-cc-ccccCChhhHhhhcCCEEEEEEEEEeC
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRI---EGLRAFLPKA-EL-LSRVNNFTELKEKVGRRMYVQITRINE 355 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi---~Gi~gFVP~s-el-~~~i~~~~el~~~VGq~V~vkVl~vD~ 355 (514)
..|++.+|.|. +.++-+.|.+ .|.++++--. ++ .+++.+.++- .+|..|+++|+++|.
T Consensus 31 ~~G~V~kGiVy-~rd~~fyV~L~dY~g~eail~dY~n~~~dr~~klkkk--LVGKTIkVqVIRvDk 93 (102)
T d1jjga_ 31 SPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER--LVGRVIKTRVVRADG 93 (102)
T ss_dssp CSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH--HTTCEEEEEEEEECS
T ss_pred CCCcEeeeEEE-EeCCEEEEEecCCCCceeeeeehhhhhHHHHHHHHHH--hcCceEEEEEEEecc
Confidence 47888888775 4556677777 3678885433 44 4555555554 599999999999983
No 51
>d1cuka3 b.40.4.2 (A:1-64) DNA helicase RuvA subunit, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=76.73 E-value=4.3 Score=29.48 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=38.5
Q ss_pred eEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEE
Q 010232 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434 (514)
Q Consensus 378 iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~v 434 (514)
-++|+|..+.+..+.|++++.|++-.++.+.+. .....|++++..+.-+
T Consensus 4 ~l~G~l~~~~~~~ivi~v~GvGY~v~v~~~~~~--------~l~~~g~~v~l~t~~~ 52 (64)
T d1cuka3 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFY--------ELPEAGQEAIVFTHFV 52 (64)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHT--------TCCCTTSEEEEEEEEE
T ss_pred EEEEEEEEEcCCEEEEEECCEEEEEEEChHHHh--------hccCCCCEEEEEEEEE
Confidence 478999999999999999876677777666554 3346899999888654
No 52
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.17 E-value=11 Score=28.97 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=47.9
Q ss_pred CCCceEEEEEEEEec-ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeC-CCeEEEEEecCc
Q 010232 374 REGTLLEGTVKKIYP-YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMF-PDKISLSIADLE 448 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~-~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde-~~rI~LSlK~l~ 448 (514)
..+....|+|....+ || ||.-.+.+-+-|+|+|++... ...+++||.|...|..-.. .+...+.++.+.
T Consensus 14 ~~~~r~~G~I~~~~~gfG-FI~~~~~~~dvF~H~s~~~~~-----~~~l~~G~~VeF~v~~~~kg~k~~Av~V~~~~ 84 (89)
T d1wfqa_ 14 SAALRETGVIEKLLTSYG-FIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIS 84 (89)
T ss_dssp SCCCEEEEEEEEECSSEE-EEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEECSSSCCEEEEEEEESS
T ss_pred CccceEEEEEEEecCccc-eEEeCCCCceEEEEeehhhcc-----CCcccCCCEEEEEEEECCCCCceEEEEEEECC
Confidence 456778999999965 45 676665357899999998532 3569999999999865322 234455555443
No 53
>d3d31a1 b.40.6.3 (A:230-348) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=71.93 E-value=18 Score=27.75 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=17.6
Q ss_pred EEEEEEEEEeCCeEEEEeCC
Q 010232 175 FVIGVVVSGNENKLDVNVGA 194 (514)
Q Consensus 175 iV~G~Vv~v~~~Gv~VdIG~ 194 (514)
++.|+|++.+++.+.|.+|.
T Consensus 4 ~l~g~v~~~~~~~~~v~~~~ 23 (119)
T d3d31a1 4 VLKGRVISAEQGLLRIRVGE 23 (119)
T ss_dssp EEEEEEEEEETTEEEEEETT
T ss_pred EEEEEEEEecCCEEEEEECC
Confidence 67999999999989999874
No 54
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=71.73 E-value=5.1 Score=29.47 Aligned_cols=46 Identities=28% Similarity=0.579 Sum_probs=33.0
Q ss_pred cCCCEEEEEEEEEECCe-EEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEe
Q 010232 295 QLNEPIEVKFTEWNTGG-LLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G-~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD 354 (514)
+.|+.++++|.+....| -+.+++|.-.|||.. .+|+++.++|+++.
T Consensus 14 k~g~~~~v~I~~l~~~G~Giar~~g~vvfV~~a--------------lPGe~V~v~I~k~k 60 (69)
T d1yvca1 14 EAGKEYEVTIEDMGKGGDGIARIDGFVVFVPNA--------------EKGSVINVKVTAVK 60 (69)
T ss_dssp CTTCEEEEECCEECTTSCEEEEETTEEEEETTC--------------CTTCEEEEEEEEEC
T ss_pred CCCCEEEEEEEECCCCCcEEEEECCEEEEeCCC--------------CCCCEEEEEEEEec
Confidence 56777777777776544 355677888888831 37999999999864
No 55
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357 {Methanosarcina mazei [TaxId: 2209]}
Probab=71.52 E-value=6.1 Score=28.86 Aligned_cols=46 Identities=28% Similarity=0.523 Sum_probs=34.1
Q ss_pred cCCCEEEEEEEEEECCe-EEEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEe
Q 010232 295 QLNEPIEVKFTEWNTGG-LLTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G-~fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD 354 (514)
+.|+.++.+|.++...| -+..++|...|||.. .+|+++.++|+++.
T Consensus 12 ~~g~~~~l~I~~l~~~G~Gi~~~~g~vvfV~ga--------------lpGe~v~v~i~k~k 58 (68)
T d1yeza1 12 EEGEVYDVTIQDIARQGDGIARIEGFVIFVPGT--------------KVGDEVRIKVERVL 58 (68)
T ss_dssp CTTEEEEEECCEEETTTEEEEEETTEEEEEESC--------------CTTCEEEEEEEEEC
T ss_pred CCCCEEEEEEEECCCCCcEEEEECCEEEEeCCC--------------CCCCEEEEEEEEEe
Confidence 56777777777777654 345678888899832 37999999999864
No 56
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=70.82 E-value=2 Score=32.23 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=42.7
Q ss_pred CceEEEEEEEEecceEE-EEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeE
Q 010232 376 GTLLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKI 440 (514)
Q Consensus 376 G~iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI 440 (514)
...+.|+|..+.+.|.| |.+.+ |..-+.|++-=-.. -.-.+.+||.|.+.+-..+ ++++|
T Consensus 5 ~ie~~G~V~e~lg~~~f~V~l~n-g~~~~a~i~Gkmrk----~ri~i~~GD~V~Vel~pyd~~kgrI 66 (71)
T d1ah9a_ 5 NIEMQGTVLETLPNTMFRVELEN-GHVVTAHISGKMRK----NYIRILTGDKVTVELTPYDLSKGRI 66 (71)
T ss_dssp CEECCEEEEEECSSSEEEEEETT-SCEEEEEECSSGGG----TTCCCCTTCEECCEECSSCTTEEEE
T ss_pred cEEEEEEEEEEcCCCEEEEEeCC-CCEEEEEccchhhe----eEEEecCCCEEEEEECccCCCcEEE
Confidence 34678999999999987 88888 88888888742211 1234789999998775444 44454
No 57
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]}
Probab=70.26 E-value=6 Score=28.72 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=34.6
Q ss_pred EEEEEEEEC---CeEEEEECCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEEE
Q 010232 301 EVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 301 ~GkV~~v~~---~G~fVdi~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl~ 352 (514)
.|+|+..+. +|.+..-+|-+.|+|.+.+. ...+. + ..|++|.+.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~d~g~DiF~H~s~l~~~~~~~---L--~~G~~V~f~~~~ 53 (66)
T d1c9oa_ 3 RGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEGFKT---L--EEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSSCCC---C--CTTCEEEEEEEE
T ss_pred CeEEEEEECCCCEEEEEecCCceEEEEehhcccccCCc---C--CCCCEEEEEEEE
Confidence 689999975 47766545689999999993 22222 3 479999998864
No 58
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.77 E-value=20 Score=27.40 Aligned_cols=36 Identities=6% Similarity=-0.199 Sum_probs=27.4
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEe-CCceeEEeecccc
Q 010232 170 PKPGDFVIGVVVSGNENKLDVNV-GADLLGTMLTKEV 205 (514)
Q Consensus 170 ik~GdiV~G~Vv~v~~~Gv~VdI-G~k~~G~Lp~sEl 205 (514)
-..+..-+|+|....+..=||.. +...+.|+|.+++
T Consensus 13 ~~~~~r~~G~I~~~~~gfGFI~~~~~~~dvF~H~s~~ 49 (89)
T d1wfqa_ 13 TSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQY 49 (89)
T ss_dssp SSCCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTC
T ss_pred CCccceEEEEEEEecCccceEEeCCCCceEEEEeehh
Confidence 34577789999999877667765 3446899998887
No 59
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=65.91 E-value=5.4 Score=29.05 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=38.4
Q ss_pred EEEEEEEec---ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEE
Q 010232 380 EGTVKKIYP---YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSI 444 (514)
Q Consensus 380 ~G~V~~I~~---~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSl 444 (514)
+|+|+...+ ||. |.-.+ |-+-|+|.|.+...-. ..+++||.|...+.. .++++-...+
T Consensus 2 ~G~Vk~f~~~kGfGF-I~~~~-g~diFvH~s~l~~~g~----~~l~~G~~V~f~~~~-~~~G~~A~~V 62 (66)
T d1g6pa_ 2 RGKVKWFDSKKGYGF-ITKDE-GGDVFVHWSAIEMEGF----KTLKEGQVVEFEIQE-GKKGPQAAHV 62 (66)
T ss_dssp CEEEEEEETTTTEEE-EEETT-SCBCBBCSSSSCCSSC----CCCCSSSEEEEEEEC-SSSCCEEEEE
T ss_pred eEEEEEEeCCCCeeE-EEecC-CceEEEEhHHhcccCC----CcCCCCCEEEEEEEE-CCCCCEEEEE
Confidence 588887743 665 44455 5689999999964321 348899999998753 3455444333
No 60
>d1cuka3 b.40.4.2 (A:1-64) DNA helicase RuvA subunit, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=62.69 E-value=15 Score=26.38 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=37.1
Q ss_pred EEEEEEEEEECCeEEEEECC--EEEEEeccccccccCChhhHhhhcCCEEEEEEEEEe
Q 010232 299 PIEVKFTEWNTGGLLTRIEG--LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 299 iV~GkV~~v~~~G~fVdi~G--i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD 354 (514)
.++|+|..+.+.-++++.+| .+.++|.+.+.. +. ..|+++.+.+.-+=
T Consensus 4 ~l~G~l~~~~~~~ivi~v~GvGY~v~v~~~~~~~-l~-------~~g~~v~l~t~~~v 53 (64)
T d1cuka3 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYE-LP-------EAGQEAIVFTHFVV 53 (64)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHTT-CC-------CTTSEEEEEEEEEE
T ss_pred EEEEEEEEEcCCEEEEEECCEEEEEEEChHHHhh-cc-------CCCCEEEEEEEEEE
Confidence 58999999999999999987 488898765532 21 37999988876543
No 61
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=62.51 E-value=2.6 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=36.7
Q ss_pred eEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEE
Q 010232 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434 (514)
Q Consensus 378 iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~v 434 (514)
-++|+|..+.+-.+.+++++.|++-+++.+.+. .+++|++++..+.-+
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~v~v~~~~~~---------~l~~g~~v~l~t~~~ 51 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIGYRVNATPSALA---------TLNQGSQARLVTAMV 51 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEEECCBCCHHHHT---------TCCSSCEECCCEEEE
T ss_pred EEEEEEEEECCCEEEEEECCEEEEEEeCHHHHH---------HCCCCCEEEEEEEEE
Confidence 478999999999999999876666666655543 356799998887544
No 62
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=58.79 E-value=3.8 Score=29.59 Aligned_cols=48 Identities=23% Similarity=0.092 Sum_probs=37.0
Q ss_pred eEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEE
Q 010232 378 LLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434 (514)
Q Consensus 378 iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~v 434 (514)
-++|+|..+.+..+.|++++.|++-+++.+.++ .++.|+++++.+.-+
T Consensus 4 ~i~G~i~~~~~~~ivi~~~GvGY~v~v~~~~~~---------~l~~g~~v~l~t~~~ 51 (62)
T d1ixra2 4 YLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQ---------ALEEGKEVGVHTHLL 51 (62)
T ss_dssp EEEEEEEEECSSEEEEECSSEEEEEECCHHHHH---------HCCTTSEEEEEECCC
T ss_pred EEEEEEEEEcCCEEEEEECCEEEEEEECHHHHh---------hccCCCEEEEEEEEE
Confidence 478999999999999999876677677665542 356899998887543
No 63
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=58.14 E-value=11 Score=27.58 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=35.2
Q ss_pred EEEEEEEEEEC---CeEEEEECC-EEEEEecccccc-ccCChhhHhhhcCCEEEEEEEE
Q 010232 299 PIEVKFTEWNT---GGLLTRIEG-LRAFLPKAELLS-RVNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 299 iV~GkV~~v~~---~G~fVdi~G-i~gFVP~sel~~-~i~~~~el~~~VGq~V~vkVl~ 352 (514)
.++|+|+..+. +|.+..-+| -+.|+|.+.+.. ..+. + ..|+.|.+.+..
T Consensus 3 r~~G~Vk~f~~~kGfGFI~~d~g~~diFvH~s~l~~~~~~~---L--~~G~~V~f~~~~ 56 (69)
T d1mjca_ 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS---L--DEGQKVSFTIES 56 (69)
T ss_dssp CEEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCCTTTCC---C--CTTCEEEEEEEC
T ss_pred CEEEEEEEEeCCCCEEEEEEcCCCccEEEEhHHhcccCCCc---C--CCCCEEEEEEEe
Confidence 37899999874 477765554 689999999942 2232 3 489999998753
No 64
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=56.18 E-value=12 Score=27.21 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=34.0
Q ss_pred cCCCCceEEEEEEEEecceE-EEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe
Q 010232 372 NLREGTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM 435 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~Ga-FV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd 435 (514)
.+++|++++.+|.++...|- ...++ |..-|++ . .-+||+|.++|+++.
T Consensus 12 pvk~g~~~~v~I~~l~~~G~Giar~~--g~vvfV~-------------~-alPGe~V~v~I~k~k 60 (69)
T d1yvca1 12 PVEAGKEYEVTIEDMGKGGDGIARID--GFVVFVP-------------N-AEKGSVINVKVTAVK 60 (69)
T ss_dssp SSCTTCEEEEECCEECTTSCEEEEET--TEEEEET-------------T-CCTTCEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEECCCCCcEEEEEC--CEEEEeC-------------C-CCCCCEEEEEEEEec
Confidence 47889999999998877665 33343 4555553 1 338999999999863
No 65
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.14 E-value=9.4 Score=28.71 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=36.9
Q ss_pred CEEEEEEEEEEC---CeEEEEEC-CEEEEEeccccccc--cCChhhHhhhcCCEEEEEEEE
Q 010232 298 EPIEVKFTEWNT---GGLLTRIE-GLRAFLPKAELLSR--VNNFTELKEKVGRRMYVQITR 352 (514)
Q Consensus 298 eiV~GkV~~v~~---~G~fVdi~-Gi~gFVP~sel~~~--i~~~~el~~~VGq~V~vkVl~ 352 (514)
..+.|+|+..+. +|.+..-+ |-+.|+|.+.+... ....+.+ ..|+.|.+.+..
T Consensus 7 ~r~~G~VKwfn~~KGfGFI~~ddg~~DvFvH~s~i~~~g~~~~~~~L--~~G~~V~f~~~~ 65 (79)
T d1h95a_ 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV--GDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSC--CSSCEEEEEEEE
T ss_pred CcccEEEEEEcCCCCeEEEEECCCCccEEEEhhHcccCCCcceeeec--CCCCEEEEEEEe
Confidence 468899999875 47776544 58999999999322 1112223 479999998874
No 66
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=55.53 E-value=3.8 Score=29.89 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=34.6
Q ss_pred EEEEEEEEEC---CeEEEEECCEEEEEeccccc-cccCChhhHhhhcCCEEEEEEE
Q 010232 300 IEVKFTEWNT---GGLLTRIEGLRAFLPKAELL-SRVNNFTELKEKVGRRMYVQIT 351 (514)
Q Consensus 300 V~GkV~~v~~---~G~fVdi~Gi~gFVP~sel~-~~i~~~~el~~~VGq~V~vkVl 351 (514)
++|+|+..+. +|.+..-+|-+.|+|.+.+. ..... + ..|+.|.+.+.
T Consensus 1 l~G~Vk~f~~~kGfGFI~~~~g~diFvH~s~l~~~g~~~---l--~~G~~V~f~~~ 51 (66)
T d1g6pa_ 1 MRGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKT---L--KEGQVVEFEIQ 51 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSSCCC---C--CSSSEEEEEEE
T ss_pred CeEEEEEEeCCCCeeEEEecCCceEEEEhHHhcccCCCc---C--CCCCEEEEEEE
Confidence 3689999875 48877656679999999993 22232 3 48999999875
No 67
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=50.34 E-value=11 Score=26.89 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=35.5
Q ss_pred EEEEEEEEEECCeEEEEECC--EEEEEeccccccccCChhhHhhhcCCEEEEEEEEE
Q 010232 299 PIEVKFTEWNTGGLLTRIEG--LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRI 353 (514)
Q Consensus 299 iV~GkV~~v~~~G~fVdi~G--i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~v 353 (514)
.++|+|..+.+..++|+.+| .+.++|.+-+. .+ ..|+++++.+.-+
T Consensus 4 ~i~G~i~~~~~~~ivi~~~GvGY~v~v~~~~~~-~l--------~~g~~v~l~t~~~ 51 (62)
T d1ixra2 4 YLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQ-AL--------EEGKEVGVHTHLL 51 (62)
T ss_dssp EEEEEEEEECSSEEEEECSSEEEEEECCHHHHH-HC--------CTTSEEEEEECCC
T ss_pred EEEEEEEEEcCCEEEEEECCEEEEEEECHHHHh-hc--------cCCCEEEEEEEEE
Confidence 57999999999999999987 48888876552 11 3699888777533
No 68
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357 {Methanosarcina mazei [TaxId: 2209]}
Probab=49.78 E-value=21 Score=25.71 Aligned_cols=47 Identities=21% Similarity=0.274 Sum_probs=34.4
Q ss_pred cCCCCceEEEEEEEEecceE-EEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEE
Q 010232 372 NLREGTLLEGTVKKIYPYGA-QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKS 434 (514)
Q Consensus 372 ~l~~G~iV~G~V~~I~~~Ga-FV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~v 434 (514)
.+++|+.++.+|.++..-|- ...++ |..-|++. .-+||+|.++|.++
T Consensus 10 pv~~g~~~~l~I~~l~~~G~Gi~~~~--g~vvfV~g--------------alpGe~v~v~i~k~ 57 (68)
T d1yeza1 10 PVEEGEVYDVTIQDIARQGDGIARIE--GFVIFVPG--------------TKVGDEVRIKVERV 57 (68)
T ss_dssp SCCTTEEEEEECCEEETTTEEEEEET--TEEEEEES--------------CCTTCEEEEEEEEE
T ss_pred CcCCCCEEEEEEEECCCCCcEEEEEC--CEEEEeCC--------------CCCCCEEEEEEEEE
Confidence 46889999999999887665 34443 45666642 33799999999986
No 69
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.98 E-value=38 Score=23.52 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=33.4
Q ss_pred CEEEEEEEEEECCeE-EEEECCEEEEEeccccccccCChhhHhhhcCCEEEEEEEEEe
Q 010232 298 EPIEVKFTEWNTGGL-LTRIEGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRIN 354 (514)
Q Consensus 298 eiV~GkV~~v~~~G~-fVdi~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD 354 (514)
++++.+|.+....|. +.+++|...|||.. .+|+++.++|++..
T Consensus 1 q~i~v~I~~l~~~G~Gv~r~~g~vvfV~~a--------------lPGE~V~v~i~~~~ 44 (60)
T d1uwva1 1 QIITVSVNDLDSFGQGVARHNGKTLFIPGL--------------LPQENAEVTVTEDK 44 (60)
T ss_dssp CCEEEEEEEECTTSEEEEEETTEEEEEETC--------------CTTCEEEEEEEEEC
T ss_pred CEEEEEEEECCCCCcEEEEECCEEEEECCC--------------CCCCEEEEEEEEec
Confidence 467889999988764 45668888999832 37999999999764
No 70
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=46.87 E-value=11 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=28.1
Q ss_pred EEEEEEEEecceEEEEECCCceEEEEEeecc
Q 010232 379 LEGTVKKIYPYGAQIRIGDSNRSGLLHISNM 409 (514)
Q Consensus 379 V~G~V~~I~~~GaFV~I~~~gi~GLvh~Sel 409 (514)
=+|.|.+|...|+.|-+.-+|++|.|+..+.
T Consensus 4 EegyV~~Vr~NGivVfVPkyGiEG~v~l~~~ 34 (88)
T d2vnud2 4 ETGYVIKVFNNGIVVLVPKFGVEGLIRLDNL 34 (88)
T ss_dssp EEEEEEEEETTEEEEEETTTTEEEEEEHHHH
T ss_pred eEEEEEEEecccEEEEEeccceeEEEEEecc
Confidence 4799999999999999998899999998754
No 71
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=46.86 E-value=18 Score=27.15 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=36.1
Q ss_pred hcCCCEEEEEEEEEECCeEEEEE-CCEEEEEeccccccccCChhhHhhhcCCEEEEEEE
Q 010232 294 KQLNEPIEVKFTEWNTGGLLTRI-EGLRAFLPKAELLSRVNNFTELKEKVGRRMYVQIT 351 (514)
Q Consensus 294 ~k~GeiV~GkV~~v~~~G~fVdi-~Gi~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl 351 (514)
......+.|+|....++-.||.. ++-+.|||..+|..- .-|++|.|+|.
T Consensus 13 ~~~~~~~~G~i~~~~~G~GFv~~d~~~DifI~~~~~~~A---------~~GD~V~v~i~ 62 (79)
T d2ix0a2 13 HSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKV---------MHGDRIIAVIH 62 (79)
T ss_dssp HHTSCEEEEEEECCC--CEEEEEETTEEEEECHHHHTTC---------CTTCEEEEEEE
T ss_pred hhcCCEEEEEEEEeCCCcEEEEECCCCcEEECHHHHcCC---------CCCCEEEEEEE
Confidence 35788999999988775445656 457999999998432 36999999885
No 72
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.83 E-value=12 Score=25.96 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=26.1
Q ss_pred cCCCCCCEEEEEEEEEeCCeE-EEEeCCceeEEeeccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKL-DVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv-~VdIG~k~~G~Lp~sEl~ 206 (514)
-.++.||+|. |+...+.++ +...+ +..|++|.+.+.
T Consensus 18 Ls~~~Gd~i~--v~~~~~~~W~~g~~~-g~~G~~P~~yv~ 54 (56)
T d1gcqa_ 18 LGFRRGDFIH--VMDNSDPNWWKGACH-GQTGMFPRNYVT 54 (56)
T ss_dssp CCBCTTCEEE--EEECCSSSEEEEEET-TEEEEEEGGGEE
T ss_pred cCCCCCCEEE--EEEecCCCEEEEEEC-CeEEEEEHhHEE
Confidence 4688999985 666655554 45654 578999988874
No 73
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.14 E-value=15 Score=25.63 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=24.9
Q ss_pred CCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl 205 (514)
.++.||++. |+...+.+ +++..+ +..|++|.+++
T Consensus 20 sf~~Gd~i~--v~~~~~~~W~~g~~~-g~~G~~P~~yV 54 (58)
T d1uj0a_ 20 TFKHGELIT--VLDDSDANWWQGENH-RGTGLFPSNFV 54 (58)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEET-TEEEEEEGGGE
T ss_pred CCCCCCEEE--EeEEeCCCEEEEEEC-CeEEEEehHhE
Confidence 688999986 66655555 445654 57899999887
No 74
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.95 E-value=15 Score=25.57 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEEEEEeCCeEE-EEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLD-VNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~-VdIG~k~~G~Lp~sEl~p 207 (514)
.++.||++. |+...+.+++ +.++ +..|++|.+.+.|
T Consensus 19 s~~~Gd~i~--v~~~~~~~Ww~g~~~-g~~G~~P~~yve~ 55 (57)
T d1utia_ 19 GFRSGEVVE--VLDSSNPSWWTGRLH-NKLGLFPANYVAP 55 (57)
T ss_dssp CBCTTCEEE--EEECCSSSEEEEEET-TEEEEEEGGGEEE
T ss_pred CCCCCCEEE--EeEEcCCCEEEEEEC-CcEEEEEHHHEEE
Confidence 688999986 6666665544 5565 5789999988743
No 75
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=41.85 E-value=50 Score=22.85 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=32.5
Q ss_pred ceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEEEEeCCCeEEEEEe
Q 010232 377 TLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSMFPDKISLSIA 445 (514)
Q Consensus 377 ~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vde~~rI~LSlK 445 (514)
++++.+|.++...|.=|--.+ |..-|++ . .-+||+|.++|.+.. ++.....+.
T Consensus 1 q~i~v~I~~l~~~G~Gv~r~~-g~vvfV~-------------~-alPGE~V~v~i~~~~-~~~~~a~~~ 53 (60)
T d1uwva1 1 QIITVSVNDLDSFGQGVARHN-GKTLFIP-------------G-LLPQENAEVTVTEDK-KQYARAKVV 53 (60)
T ss_dssp CCEEEEEEEECTTSEEEEEET-TEEEEEE-------------T-CCTTCEEEEEEEEEC-SSEEEEEEE
T ss_pred CEEEEEEEECCCCCcEEEEEC-CEEEEEC-------------C-CCCCCEEEEEEEEec-CCeEEEEEE
Confidence 457778888877776443323 4555553 1 237999999998753 344444443
No 76
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=41.71 E-value=27 Score=24.89 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=30.2
Q ss_pred ceEEEEEEEEecceE----EEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 377 TLLEGTVKKIYPYGA----QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 377 ~iV~G~V~~I~~~Ga----FV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
..+.|+|.+|.+.+. .+++.+ |..=...++.-+.. .-.+++|+.|.+.+.
T Consensus 6 N~l~g~V~~I~~~~~~~~V~l~~~~-g~~l~a~IT~~s~~-----~L~L~~G~~V~a~iK 59 (68)
T d1h9ma2 6 NILTGTVKTIETGAVNAEVTLALQG-GTEITSMVTKEAVA-----ELGLKPGASASAVIK 59 (68)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETT-SCEEEEEEEHHHHH-----HTTCCTTCEEEEEEC
T ss_pred hEEEEEEEEEEECCCcEEEEEEeCC-CCEEEEEeCHHHHh-----hCCCCCCCEEEEEEE
Confidence 468899999998663 444543 33322233222211 123889999999875
No 77
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.24 E-value=8.2 Score=27.13 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=28.1
Q ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~ 206 (514)
.++.||++. |+...++++++....+..|++|.+.+-
T Consensus 19 s~~~Gd~i~--v~~~~~~ww~~~~~~g~~G~~P~nyve 54 (59)
T d1i07a_ 19 SVMKDDVLE--ILDDRRQWWKVRNASGDSGFVPNNILD 54 (59)
T ss_dssp CBCTTCEEE--ECGGGCCEEEEECTTSCEEEEEGGGEE
T ss_pred eEcCCCEEE--EEEEcCCcEEEEEcCCCEEEECHHHeE
Confidence 688999987 666667777776656679999998874
No 78
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}
Probab=40.46 E-value=15 Score=25.55 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=27.2
Q ss_pred cCCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl~p 207 (514)
-.++.||+|. |+...+.| +++.++ +..|++|.+.+.|
T Consensus 19 Lsf~~Gd~i~--v~~~~~~~W~~g~~~-g~~G~~P~~yvep 56 (58)
T d1sema_ 19 LAFKRGDVIT--LINKDDPNWWEGQLN-NRRGIFPSNYVCP 56 (58)
T ss_dssp CCBCTTCEEE--EEECSSSSEEEEEET-TEEEEEEGGGEEE
T ss_pred cCCCCCCEEE--EeEEcCCCEEEEEEC-CeEEEEEhhhEEE
Confidence 3688999985 67766655 556665 5789999988854
No 79
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.12 E-value=15 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.7
Q ss_pred CCCCCCEEEEEEEEEeCCeE-EEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENKL-DVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~Gv-~VdIG~k~~G~Lp~sEl 205 (514)
.++.||+|. |+...+.++ .+..+.+..|++|.+.+
T Consensus 19 s~~~Gd~i~--v~~~~~~~Ww~~~~~~g~~G~vP~~yv 54 (57)
T d1ckaa_ 19 PFKKGDILR--IRDKPEEQWWNAEDSEGKRGMIPVPYV 54 (57)
T ss_dssp CBCTTCEEE--EEECSSSSEEEEECTTSCEEEEEGGGE
T ss_pred CCCCCCEEE--EEEEcCCCeEEEEECCCCEEEEcHHHe
Confidence 688999987 556655554 45556567899998877
No 80
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=39.94 E-value=1.5 Score=33.03 Aligned_cols=57 Identities=23% Similarity=0.224 Sum_probs=40.4
Q ss_pred eEEEEEEEEecceEE-EEECCCceEEEEEeec-cccccccCcccccCCCCEEEEEEEEEe-CCCeE
Q 010232 378 LLEGTVKKIYPYGAQ-IRIGDSNRSGLLHISN-MSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKI 440 (514)
Q Consensus 378 iV~G~V~~I~~~GaF-V~I~~~gi~GLvh~Se-ls~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI 440 (514)
.+.|+|....+.|.| |.+.+ |..-+.|++- |... .-.+.+||.|.|.+-..| ++++|
T Consensus 8 ~~~G~V~~~l~~~~f~V~l~n-g~~~~a~i~GkmRk~-----ri~i~~GD~V~Vel~pyd~~kgrI 67 (71)
T d1hr0w_ 8 RTEGVVTEALPNATFRVKLDS-GPEILAYISGKMRMH-----YIRILPGDRVVVEITPYDPTRGRI 67 (71)
T ss_dssp CCEEECCCCCTTTBCCCEESS-SCBCCCEECHHHHHT-----CCCCCTTCEEEEECCTTCTTCCEE
T ss_pred EEEEEEEEECCCCEEEEEECC-CCEEEEEecchhhee-----eEEecCCCEEEEEECccCCCcEEE
Confidence 468999999998887 88887 7777777663 2111 234778999999876555 55665
No 81
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.41 E-value=19 Score=24.83 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=26.4
Q ss_pred cCCCCCCEEEEEEEEEeCCeEE-EEe-CCceeEEeecccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLD-VNV-GADLLGTMLTKEV 205 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~-VdI-G~k~~G~Lp~sEl 205 (514)
-.++.||++. |+...+.+++ ... ..+..|++|.+.+
T Consensus 17 Ls~~~Gd~i~--v~~~~~~~Ww~~~~~~~g~~G~~P~~yV 54 (58)
T d1jo8a_ 17 LTFVENDKII--NIEFVDDDWWLGELEKDGSKGLFPSNYV 54 (58)
T ss_dssp CCBCTTCEEE--EEECCSSSEEEEEETTTCCEEEEEGGGE
T ss_pred cCCCCCCEEE--EEEEcCCCEEEEEECCCCCEEEEchHHE
Confidence 3688999996 6666666655 444 4567899998886
No 82
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.35 E-value=23 Score=24.20 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.7
Q ss_pred cCCCCCCEEEEEEEEEeCCeEE-EE-eCCceeEEeecccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLD-VN-VGADLLGTMLTKEVLP 207 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~-Vd-IG~k~~G~Lp~sEl~p 207 (514)
-.++.||++. |+...+.+.+ +. ...+..|++|.+.+.|
T Consensus 17 Ls~~~Gd~i~--v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~p 56 (57)
T d1efna_ 17 LSFHKGEKFQ--ILNSSEGDWWEARSLTTGETGYIPSNYVAP 56 (57)
T ss_dssp CCBCTTCEEE--EEECSSCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred cCCCCCCEEE--EEEecCCCCEEEEECCCCCEEEEeHHHeEE
Confidence 3688999986 6666555544 44 3556899999988743
No 83
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=35.60 E-value=9.8 Score=28.21 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=41.0
Q ss_pred CCCEEEEEEEEEECCeEE-EEE-CC--EEEEEeccccccccCChhhHhhhcCCEEEEEEEEEeCCCCceE
Q 010232 296 LNEPIEVKFTEWNTGGLL-TRI-EG--LRAFLPKAELLSRVNNFTELKEKVGRRMYVQITRINEDTNDLI 361 (514)
Q Consensus 296 ~GeiV~GkV~~v~~~G~f-Vdi-~G--i~gFVP~sel~~~i~~~~el~~~VGq~V~vkVl~vD~e~~rIi 361 (514)
....+.|+|+....+|-| |.+ +| +.|.+|-.--..++. + .+|+.|.+.+-.+|..+++|+
T Consensus 4 d~ie~~G~V~e~lg~~~f~V~l~ng~~~~a~i~Gkmrk~ri~----i--~~GD~V~Vel~pyd~~kgrIi 67 (71)
T d1ah9a_ 4 DNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIR----I--LTGDKVTVELTPYDLSKGRIV 67 (71)
T ss_dssp CCEECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCC----C--CTTCEECCEECSSCTTEEEEC
T ss_pred ccEEEEEEEEEEcCCCEEEEEeCCCCEEEEEccchhheeEEE----e--cCCCEEEEEECccCCCcEEEE
Confidence 344678999999998866 666 45 466666443222222 1 489999999988887777665
No 84
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.36 E-value=22 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=26.7
Q ss_pred cCCCCCCEEEEEEEEEeCCeE-EEEeCCceeEEeecccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKL-DVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv-~VdIG~k~~G~Lp~sEl~p 207 (514)
-.|+.||+|. |+...+.++ +... .+..|++|.+.+-+
T Consensus 22 Lsf~~Gd~i~--vl~~~~~~Ww~g~~-~g~~G~~P~~yVe~ 59 (62)
T d1k4us_ 22 LEFQEGDIIL--VLSKVNEEWLEGES-KGKVGIFPKVFVED 59 (62)
T ss_dssp CCBCSSCEEE--EEEESSSSCEEEEC-SSCEEEECGGGCCC
T ss_pred cCCCCCCEEE--EeEEcCCCEEEEEE-CCcEEEEchHHeEE
Confidence 3788999986 676665664 4555 45799999988743
No 85
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.32 E-value=15 Score=26.70 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.8
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVLPL 208 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~p~ 208 (514)
-.|+.||+|. |+..+++.+++... +..|++|...+.+.
T Consensus 25 Ls~~~Gd~v~--vl~~~~~Ww~~~~~-g~~G~vP~~yv~~~ 62 (69)
T d1uhfa_ 25 LTFTEGEEIL--VTQKDGEWWTGSIG-DRSGIFPSNYVKPK 62 (69)
T ss_dssp CCBCTTCEEE--ECEEETTEEEECST-TCCEEECGGGCEEC
T ss_pred cCCCCCCEEE--EEEecCCEEEEEEC-CcEEEEchhhEEEC
Confidence 3788999995 66777776777664 56899999888543
No 86
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}
Probab=35.21 E-value=13 Score=25.53 Aligned_cols=36 Identities=6% Similarity=-0.077 Sum_probs=25.9
Q ss_pred cCCCCCCEEEEEEEEE-eCCeEEEEeCCceeEEeecccc
Q 010232 168 YEPKPGDFVIGVVVSG-NENKLDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v-~~~Gv~VdIG~k~~G~Lp~sEl 205 (514)
-.++.||++. |+.. +++.+.+....+..|++|.+.+
T Consensus 15 Ls~~~Gd~~~--vl~~~~~~Ww~~~~~~g~~G~vP~~yv 51 (53)
T d2rn8a1 15 LALRCDEEYY--LLDSSEIHWWRVQDKNGHEGYAPSSYL 51 (53)
T ss_dssp CCCCTTCEEE--ECCCSCSSCEEEECTTSCEEEECGGGE
T ss_pred eeECCCCEEE--EeEEcCCCeEEEEeCCCCEEEEeHHHE
Confidence 3688999986 4454 4455667666667899998876
No 87
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.34 E-value=19 Score=28.33 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl~p 207 (514)
.|+.||+|. |+...+.| +++..+ +..|++|...+..
T Consensus 32 s~~~Gd~i~--Vl~~~~~gWw~g~~~-g~~G~~P~~yv~~ 68 (118)
T d1ng2a2 32 SLLEGEAVE--VIHKLLDGWWVIRKD-DVTGYFPSMYLQK 68 (118)
T ss_dssp CBCTTCEEE--EEECCTTSEEEEEET-TEEEEEEGGGEEE
T ss_pred cCCCCCEEE--EeEecCCCeEEEEEC-CeEEEEehhhEEE
Confidence 788999995 66666665 456654 5789999999854
No 88
>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=34.12 E-value=14 Score=26.37 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=20.6
Q ss_pred EEEEEEEEEeCCeEEEEeCC-ceeEEee
Q 010232 175 FVIGVVVSGNENKLDVNVGA-DLLGTML 201 (514)
Q Consensus 175 iV~G~Vv~v~~~Gv~VdIG~-k~~G~Lp 201 (514)
.++|+|..+.++.+.|+++. +.+.++|
T Consensus 4 ~i~G~i~~~~~~~ivi~v~GvGY~v~v~ 31 (63)
T d1bvsa3 4 SVRGEVLEVALDHAVIEAAGIGYRVNAT 31 (63)
T ss_dssp EECEEEEEECSSCEEEEETTEEECCBCC
T ss_pred EEEEEEEEECCCEEEEEECCEEEEEEeC
Confidence 57899999999999999953 3344333
No 89
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.24 E-value=19 Score=24.77 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=22.2
Q ss_pred CCCCCCEEEEEEEEE-eCCeEEEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSG-NENKLDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v-~~~Gv~VdIG~k~~G~Lp~sEl 205 (514)
.++.||+|+ |+.. .+.+++.---.+..|++|.+.+
T Consensus 18 s~~~Gd~v~--v~~~~~~~~W~~~~~~g~~G~vP~nyv 53 (56)
T d1gria1 18 SFKRGDILK--VLNEECDQNWYKAELNGKDGFIPKNYI 53 (56)
T ss_dssp CBCTTCEEE--C------CCEEEEESSSCEEEEEGGGE
T ss_pred CCCCCCEEE--EEeccCCCCeEEEEECCcEEEEehhhE
Confidence 688999986 5543 4567775443457899998876
No 90
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.60 E-value=23 Score=25.84 Aligned_cols=36 Identities=19% Similarity=0.017 Sum_probs=28.4
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCceeEEeeccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVNVGADLLGTMLTKEVL 206 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~VdIG~k~~G~Lp~sEl~ 206 (514)
-.|+.||+|. |+..+++.++..+. +..|++|...+.
T Consensus 27 Ls~~~Gd~i~--vl~~~~~ww~g~~~-g~~G~fP~~yve 62 (74)
T d1j3ta_ 27 LNFSKHDIIT--VLEQQENWWFGEVH-GGRGWFPKSYVK 62 (74)
T ss_dssp CCBCTTCEEE--EEEECSSEEEEEST-TCCCEEEGGGEE
T ss_pred ecCCCCCEEE--EEEccCCeEEEEEC-CcEEEEchhhEE
Confidence 3788999986 67777777877774 568999998874
No 91
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.57 E-value=19 Score=24.55 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl 205 (514)
.++.||+|. |+...+.| +++..+ +..|++|.+.+
T Consensus 18 s~~~Gd~v~--vl~~~~~gWw~g~~~-g~~G~~P~~yv 52 (53)
T d1wlpb1 18 SLLEGEAVE--VIHKLLDGWWVIRKD-DVTGYFPSMYL 52 (53)
T ss_dssp CBCTTCEEE--EEECCTTSSEEEESS-SCEEEECSTTE
T ss_pred cCCCCCEEE--EEeecCCceEEEEEC-CcEeEecHHhC
Confidence 688999975 66665555 556654 57899998764
No 92
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
Probab=31.55 E-value=46 Score=23.49 Aligned_cols=52 Identities=19% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCceEEEEEEEEecceE----EEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 375 EGTLLEGTVKKIYPYGA----QIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 375 ~G~iV~G~V~~I~~~Ga----FV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
.-..+.|+|++|.+.+. .+++.+ |..=...++.-+.. + -.+++|+.|.+.|+
T Consensus 4 arN~l~g~V~~I~~~~~~~~V~l~l~~-g~~l~a~IT~~s~~---~--L~L~~G~~V~a~iK 59 (67)
T d1guta_ 4 ARNQLKGKVVGLKKGVVTAEVVLEIAG-GNKITSIISLDSVE---E--LGVKEGAELTAVVK 59 (67)
T ss_dssp CSCEEEEEEEEEEECSSEEEEEEEETT-SCEEEEEEEHHHHH---H--HTCCTTCEEEEECC
T ss_pred hhhEEEEEEEEEEECCCcEEEEEEeCC-CCEEEEEcCHHHHH---H--CCCCCCCEEEEEEE
Confidence 34578999999988653 344433 33322222222211 1 23889999998775
No 93
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.96 E-value=28 Score=24.41 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=28.6
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEE-eCCceeEEeecccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDVN-VGADLLGTMLTKEVLP 207 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~Vd-IG~k~~G~Lp~sEl~p 207 (514)
-.++.||++. |+..+++.+++- ...+..|++|.+.+.+
T Consensus 21 Ls~~~Gd~i~--v~~~~~~ww~~~~~~~g~~G~vP~~yv~~ 59 (65)
T d1qcfa1 21 LSFQKGDQMV--VLEESGEWWKARSLATRKEGYIPSNYVAR 59 (65)
T ss_dssp CCBCTTCEEE--EEECCTTEEEEEETTTCCEEEEEGGGEEE
T ss_pred cCCCCCCEEE--EEEECCCCEEEEEccCCCEEEEchHHeEE
Confidence 3688999985 667677777754 4556799999998854
No 94
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.61 E-value=29 Score=24.07 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=27.2
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEE-EeCCceeEEeeccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDV-NVGADLLGTMLTKEVL 206 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~V-dIG~k~~G~Lp~sEl~ 206 (514)
-.++.||+|. |+...+..+++ ....+..|++|.+++.
T Consensus 23 Ls~~~Gd~i~--v~~~~~~ww~~~~~~~g~~G~~P~~yV~ 60 (62)
T d2iima1 23 LGFEKGEQLR--ILEQSGEWWKAQSLTTGQEGFIPFNFVA 60 (62)
T ss_dssp CCBCTTCEEE--EEECCSSEEEEEETTTCCEEEEEGGGEE
T ss_pred cCCCCCCEEE--EeEEcCCCEEEEeccCCeEeEEcHHHEE
Confidence 3688999996 66776777765 3445679999988873
No 95
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=29.94 E-value=33 Score=25.51 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=36.3
Q ss_pred CCCceEEEEEEEEec-ceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 374 REGTLLEGTVKKIYP-YGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 374 ~~G~iV~G~V~~I~~-~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
.....+.|+|..-.. || ||...+ +-+-+||..++.. .--||+|.|+|.
T Consensus 14 ~~~~~~~G~i~~~~~G~G-Fv~~d~-~~DifI~~~~~~~---------A~~GD~V~v~i~ 62 (79)
T d2ix0a2 14 SQTPRAEGVVKATEKGFG-FLEVDA-QKSYFIPPPQMKK---------VMHGDRIIAVIH 62 (79)
T ss_dssp HTSCEEEEEEECCC--CE-EEEEET-TEEEEECHHHHTT---------CCTTCEEEEEEE
T ss_pred hcCCEEEEEEEEeCCCcE-EEEECC-CCcEEECHHHHcC---------CCCCCEEEEEEE
Confidence 455689999987755 65 787877 6788999888852 335999999986
No 96
>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=29.07 E-value=55 Score=23.41 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=30.6
Q ss_pred CCceEEEEEEEEecceE--EE--EECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 375 EGTLLEGTVKKIYPYGA--QI--RIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 375 ~G~iV~G~V~~I~~~Ga--FV--~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
.-..+.|+|.+|.+.|. .| .+.+ |..=...++.-+... -.+++|+.|.+.|+
T Consensus 5 arN~l~g~V~~I~~~~~~~~V~l~~~~-g~~l~A~IT~~S~~~-----L~L~~G~~V~a~iK 60 (73)
T d1h9ma1 5 ARNVFKGTVSALKEGAVNAEVDILLGG-GDKLAAVVTLESARS-----LQLAAGKEVVAVVK 60 (73)
T ss_dssp CSEEEEEEEEEEEECSSEEEEEEEESS-SCEEEEEEEHHHHHH-----TTCCTTCEEEEEEC
T ss_pred cccEEEEEEEEEEeCCCCEEEEEEECC-CCEEEEEcCHHHHhh-----CCCCCCCEEEEEEE
Confidence 34568899999998764 33 3433 332222232222211 23889999999886
No 97
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.81 E-value=31 Score=24.42 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=27.5
Q ss_pred cCCCCCCEEEEEEEEEeC-CeEEEEeCCceeEEeeccccccc
Q 010232 168 YEPKPGDFVIGVVVSGNE-NKLDVNVGADLLGTMLTKEVLPL 208 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~-~Gv~VdIG~k~~G~Lp~sEl~p~ 208 (514)
-.++.||++. |+...+ +.+++....+..|++|.+.+.+.
T Consensus 19 Ls~~~Gd~i~--v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~ 58 (67)
T d1gl5a_ 19 LRLERGQEYI--ILEKNDLHWWRARDKYGSEGYIPSNYVTGK 58 (67)
T ss_dssp CCBCTTCEEE--EEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred cCCCCCCEEE--EEEecCCCcEEEEECCCCEEEEEhHHeEEe
Confidence 3688999987 556655 45556544456899999998543
No 98
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.53 E-value=33 Score=24.59 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEEEEE-eCCeEE-EEeCCceeEEeeccccc
Q 010232 169 EPKPGDFVIGVVVSG-NENKLD-VNVGADLLGTMLTKEVL 206 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v-~~~Gv~-VdIG~k~~G~Lp~sEl~ 206 (514)
.|+.||+|. |+.. ++.+++ +....+..|++|.+.+.
T Consensus 24 s~~~Gd~i~--vl~~~~~~~W~~~~~~~g~~G~~P~~yve 61 (71)
T d1k9aa1 24 PFCKGDVLT--IVAVTKDPNWYKAKNKVGREGIIPANYVQ 61 (71)
T ss_dssp CBCTTCEEE--EEEECSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred cCCCCCEEE--EeEeccCCCEEEEEeCCCCEEEEchHHeE
Confidence 688999986 4444 455555 44455678999999884
No 99
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.41 E-value=37 Score=23.10 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.0
Q ss_pred cCCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccc
Q 010232 168 YEPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEV 205 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl 205 (514)
-.++.||++. |+...+.| +++..+ +..|++|.+.+
T Consensus 17 Ls~~~Gd~v~--v~~~~~~~Ww~g~~~-g~~G~~P~~yv 52 (55)
T d1u06a1 17 VTMKKGDILT--LLNSTNKDWWKVEVN-DRQGFVPAAYV 52 (55)
T ss_dssp CCBCTTCEEE--EEECCSSSEEEEEET-TEEEEEEGGGE
T ss_pred ccCCCCCEEE--EeEEcCCCEEEEEEC-CeEEEEeHHHE
Confidence 3688999986 55555555 446665 57899998876
No 100
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=27.25 E-value=1.2e+02 Score=24.61 Aligned_cols=67 Identities=6% Similarity=-0.026 Sum_probs=45.2
Q ss_pred eEEEEEEEEec--ceEEEEECCC--ceEEEEEeeccccccccCcccccCCCCEEEEEEEEEe-CCCeEEEEE
Q 010232 378 LLEGTVKKIYP--YGAQIRIGDS--NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVVKSM-FPDKISLSI 444 (514)
Q Consensus 378 iV~G~V~~I~~--~GaFV~I~~~--gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi~vd-e~~rI~LSl 444 (514)
.+.|+|..+.. ..+|++|.+. .+..++....+.........+.+.+||.|-|.=.=.. .++-++|-.
T Consensus 58 ~vaGRI~~~R~~Gk~~F~~i~D~~g~iQi~~~~~~~~~~~~~~~~k~ld~GDiIgv~G~~~~TktGElsi~~ 129 (143)
T d1e1oa1 58 SVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHC 129 (143)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEE
T ss_pred EEEEEEEEEcccCCeeEEEEEeCCceEEEEEccccchhhhHHHHHhcCCcccEEEeecccEECCCCcEEEEe
Confidence 48899998875 4579999543 4777788888876655555677999999976532112 445554433
No 101
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.34 E-value=20 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=22.6
Q ss_pred cCCCEEEEEEEEEECCeEEEEECCEEEEEecccc
Q 010232 295 QLNEPIEVKFTEWNTGGLLTRIEGLRAFLPKAEL 328 (514)
Q Consensus 295 k~GeiV~GkV~~v~~~G~fVdi~Gi~gFVP~sel 328 (514)
+.|+++. |...++.-.++...|-.|++|.+.+
T Consensus 28 ~~Gd~v~--vl~~~~~Ww~~~~~g~~G~vP~~yv 59 (69)
T d1uhfa_ 28 TEGEEIL--VTQKDGEWWTGSIGDRSGIFPSNYV 59 (69)
T ss_dssp CTTCEEE--ECEEETTEEEECSTTCCEEECGGGC
T ss_pred CCCCEEE--EEEecCCEEEEEECCcEEEEchhhE
Confidence 4666664 4455666666667788999998877
No 102
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.69 E-value=43 Score=22.91 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEEEEEe-CCeEE-EEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGN-ENKLD-VNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~-~~Gv~-VdIG~k~~G~Lp~sEl~p 207 (514)
.++.|+++. |+... +++++ +..+ +..|++|.+.+.|
T Consensus 18 s~~~Gd~i~--vl~~~~~~~W~~~~~~-g~~G~~P~~yv~~ 55 (57)
T d1opka1 18 SITKGEKLR--VLGYNHNGEWCEAQTK-NGQGWVPSNYITP 55 (57)
T ss_dssp CBCTTCEEE--EEEECTTSSEEEEECS-SCEEEEEGGGEEE
T ss_pred CCCCCCEEE--EeEecCCCCEEEEEEC-CCEeEEchhheEE
Confidence 678999997 55443 44455 5544 4689999988754
No 103
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=24.61 E-value=91 Score=23.55 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=25.3
Q ss_pred EEEEEEEEECCeEEEEE--CCEEEEEecccc
Q 010232 300 IEVKFTEWNTGGLLTRI--EGLRAFLPKAEL 328 (514)
Q Consensus 300 V~GkV~~v~~~G~fVdi--~Gi~gFVP~sel 328 (514)
=+|.|.++.++|+.|-+ -|++|.|-+...
T Consensus 4 EegyV~~Vr~NGivVfVPkyGiEG~v~l~~~ 34 (88)
T d2vnud2 4 ETGYVIKVFNNGIVVLVPKFGVEGLIRLDNL 34 (88)
T ss_dssp EEEEEEEEETTEEEEEETTTTEEEEEEHHHH
T ss_pred eEEEEEEEecccEEEEEeccceeEEEEEecc
Confidence 47999999999999999 489999987655
No 104
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.04 E-value=54 Score=23.69 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.5
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEE-Ee----CCceeEEeeccccc
Q 010232 168 YEPKPGDFVIGVVVSGNENKLDV-NV----GADLLGTMLTKEVL 206 (514)
Q Consensus 168 ~~ik~GdiV~G~Vv~v~~~Gv~V-dI----G~k~~G~Lp~sEl~ 206 (514)
-.|+.||+|. |+...+.+++. .+ ..+..|++|..++.
T Consensus 24 Ls~~~Gd~i~--Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~ 65 (80)
T d1ue9a_ 24 LSLAPGQLIL--ILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65 (80)
T ss_dssp CCCCTTCEEE--EEEECSSSEEEEEECSCCSSCCEEEEETTSEE
T ss_pred eeEcCCCEEE--EEEEeCCCeEEEEEccCCCCCCEeEEEheeEE
Confidence 3689999986 67776777664 33 23457999998874
No 105
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Sporomusa ovata [TaxId: 2378]}
Probab=23.90 E-value=26 Score=24.93 Aligned_cols=18 Identities=6% Similarity=-0.121 Sum_probs=13.3
Q ss_pred CCEEEEEEEEEeCCeEEE
Q 010232 173 GDFVIGVVVSGNENKLDV 190 (514)
Q Consensus 173 GdiV~G~Vv~v~~~Gv~V 190 (514)
--...|+|.++.+++..+
T Consensus 6 rN~l~g~V~~I~~~~~~~ 23 (67)
T d1fr3a_ 6 RNKLEATVKEIVKGTVMA 23 (67)
T ss_dssp CEEEEEEEEEEEECSSEE
T ss_pred ccEEEEEEEEEEECCCeE
Confidence 346789999998876443
No 106
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.12 E-value=41 Score=23.13 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCCCCEEEEEEEEEe--CCeEE-EEeCCceeEEeecccc
Q 010232 169 EPKPGDFVIGVVVSGN--ENKLD-VNVGADLLGTMLTKEV 205 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~--~~Gv~-VdIG~k~~G~Lp~sEl 205 (514)
.++.|++|. |+... +.+++ ...+ +..|++|.+.+
T Consensus 19 s~~~Gd~v~--vl~~~~~~~~W~~~~~~-g~~G~vP~~yv 55 (58)
T d1oota_ 19 PFRKGDVIT--ILKKSDSQNDWWTGRVN-GREGIFPANYV 55 (58)
T ss_dssp CBCTTCEEE--EEECCSCTTSEEEEEET-TEEEEEEGGGE
T ss_pred cCCCCCEEE--EEEeecCCCCEEEEEEC-CcEEEEcHHHE
Confidence 688999987 55543 34544 5554 57899998876
No 107
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81 E-value=22 Score=24.52 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEEEEEeCCe-EEEEeCCceeEEeecccccc
Q 010232 169 EPKPGDFVIGVVVSGNENK-LDVNVGADLLGTMLTKEVLP 207 (514)
Q Consensus 169 ~ik~GdiV~G~Vv~v~~~G-v~VdIG~k~~G~Lp~sEl~p 207 (514)
.++.||+|. |+...+.+ +++..+ +..|++|.+.+.+
T Consensus 20 s~~~Gd~i~--vl~~~~~~Ww~~~~~-g~~G~~P~~yve~ 56 (58)
T d1ng2a1 20 ALSTGDVVE--VVEKSESGWWFCQMK-AKRGWIPASFLEP 56 (58)
T ss_dssp CBCTTCEEE--EEECCTTSCCEEEEC-CCCCCCCGGGCCC
T ss_pred CCCCCCEEE--EEEecCCCeEEEEEC-CCCcEEcHhHEEE
Confidence 678999996 56555555 555554 4679999888743
No 108
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Sporomusa ovata [TaxId: 2378]}
Probab=20.74 E-value=25 Score=25.03 Aligned_cols=54 Identities=26% Similarity=0.231 Sum_probs=30.0
Q ss_pred CceEEEEEEEEecceEEEEECCCceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 376 GTLLEGTVKKIYPYGAQIRIGDSNRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 376 G~iV~G~V~~I~~~GaFV~I~~~gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
-..+.|+|.+|.+.|..+++.- .+.|.--.+.++..-..+ -.+++|+.|.+.+.
T Consensus 6 rN~l~g~V~~I~~~~~~~~V~l-~~~g~~l~a~IT~~s~~~--L~L~~G~~V~a~iK 59 (67)
T d1fr3a_ 6 RNKLEATVKEIVKGTVMAKIVM-DYKGTELVAAITIDSVAD--LDLVPGDKVTALVK 59 (67)
T ss_dssp CEEEEEEEEEEEECSSEEEEEE-EETTEEEEEEEEHHHHHH--HTCCTTCEEEEEEC
T ss_pred ccEEEEEEEEEEECCCeEEEEE-EECCcEEEEEcCHHHHHh--cCCCCCCEEEEEEE
Confidence 4568899999998777644421 011111112222221221 23889999999875
No 109
>d1h9ra1 b.40.6.2 (A:123-199) C-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=20.73 E-value=88 Score=22.52 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=30.3
Q ss_pred ceEEEEEEEEecceE--EE--EECCC--ceEEEEEeeccccccccCcccccCCCCEEEEEEE
Q 010232 377 TLLEGTVKKIYPYGA--QI--RIGDS--NRSGLLHISNMSRTRVTSVSDLLNEGERVKVLVV 432 (514)
Q Consensus 377 ~iV~G~V~~I~~~Ga--FV--~I~~~--gi~GLvh~Sels~~~v~~~~~~~kvGd~VkvkVi 432 (514)
..+.|+|.+|.+.+. .| .+.+. .+...|...-+. + -.+++|+.|.+.|.
T Consensus 7 N~l~g~V~~I~~~~~~~~V~v~l~~g~~~l~A~IT~~S~~-----~--L~L~~G~~V~a~iK 61 (77)
T d1h9ra1 7 NQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGA-----R--LGLDEGKEVLILLK 61 (77)
T ss_dssp EEEEEEEEEECCCSSEEEEEEEETTSSCEEEEEEEHHHHH-----H--HTCCTTCEEEEEEC
T ss_pred cEEEEEEEEEEECCCcEEEEEEECCCCEEEEEEeCHHHHH-----h--cCCCCCCEEEEEEE
Confidence 468899999998764 34 44331 244444333222 1 23889999999875
No 110
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=20.63 E-value=42 Score=25.01 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=20.3
Q ss_pred EEEEEEEEEeCCCCc---eEeehhhhhhhccCCCCceEEEEE
Q 010232 345 RMYVQITRINEDTND---LILSEREAWATLNLREGTLLEGTV 383 (514)
Q Consensus 345 ~V~vkVl~vD~e~~r---IiLS~K~~~~~~~l~~G~iV~G~V 383 (514)
++.++|.+++..+.. +.+..........+++||-+.-.+
T Consensus 3 ~~~~~v~~v~~lt~~v~~~~l~~~~~~~~~~f~pGQ~v~l~i 44 (100)
T d1krha1 3 HFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTL 44 (100)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEEC
T ss_pred EEEEEEEEEEEcCCCeEEEEEEcCCCCcCCCCCCCEEEEEEE
Confidence 456777777554432 233322211123567888876554
No 111
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.13 E-value=70 Score=23.96 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=23.0
Q ss_pred CEEEEEEEEEeCCCCce-EeehhhhhhhccCCCCceEEEEE
Q 010232 344 RRMYVQITRINEDTNDL-ILSEREAWATLNLREGTLLEGTV 383 (514)
Q Consensus 344 q~V~vkVl~vD~e~~rI-iLS~K~~~~~~~l~~G~iV~G~V 383 (514)
+.+.++|+++.+.+..+ .+..+.+ ...+++||-+.-.+
T Consensus 2 ~w~~a~V~~v~~~t~~v~~l~~~~p--~~~f~pGQ~v~l~~ 40 (99)
T d1fdra1 2 DWVTGKVTKVQNWTDALFSLTVHAP--VLPFTAGQFTKLGL 40 (99)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEECC--CCCCCTTCEEEEEE
T ss_pred CcEEEEEEEEEEcCCCEEEEEEcCC--CCCCCCCcEEEecc
Confidence 45788888887666543 2333322 23688899876544
Done!