Query 010233
Match_columns 514
No_of_seqs 297 out of 2065
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 22:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdm_A Prophytepsin; aspartic 100.0 3.3E-86 1.1E-90 701.4 41.8 478 31-514 1-478 (478)
2 3psg_A Pepsinogen; hydrolase(a 100.0 1.6E-69 5.5E-74 557.7 36.8 368 30-514 1-370 (370)
3 2x0b_A Renin; hydrolase-hormon 100.0 4.5E-69 1.6E-73 555.7 35.6 373 29-514 7-383 (383)
4 1tzs_A Cathepsin E; hydrolase, 100.0 5.6E-64 1.9E-68 513.6 34.7 332 76-514 11-342 (351)
5 3k1w_A Renin; protease, altern 100.0 8.3E-64 2.8E-68 510.6 34.4 332 76-514 6-340 (341)
6 3cms_A Chymosin B; hydrolase, 100.0 1.4E-63 4.9E-68 504.9 35.8 322 76-514 2-323 (323)
7 1dpj_A Proteinase A; proteinas 100.0 2.2E-63 7.4E-68 505.0 35.7 326 78-514 3-329 (329)
8 4aa9_A Chymosin; hydrolase, as 100.0 1.9E-63 6.5E-68 503.5 32.5 319 79-514 2-320 (320)
9 1am5_A Pepsin, acid proteinase 100.0 4E-63 1.4E-67 502.0 34.6 322 79-514 3-324 (324)
10 1htr_B Gastricsin; aspartyl pr 100.0 4E-63 1.4E-67 503.1 33.1 325 79-514 4-329 (329)
11 3qvc_A Histo-aspartic protease 100.0 3E-62 1E-66 513.6 36.4 321 76-514 125-449 (451)
12 1miq_A Plasmepsin; aspartic pr 100.0 2.9E-62 9.9E-67 504.5 35.2 321 76-514 50-374 (375)
13 2bju_A Plasmepsin II; aspartic 100.0 1.4E-61 4.7E-66 508.0 33.8 322 76-514 126-450 (453)
14 1mpp_A Pepsin; hydrolase(acid 100.0 5.4E-61 1.8E-65 493.5 31.6 326 76-514 6-355 (361)
15 1yg9_A Aspartic protease BLA G 100.0 7E-61 2.4E-65 486.5 31.5 318 77-514 6-329 (330)
16 2apr_A Rhizopuspepsin; hydrola 100.0 1E-58 3.6E-63 469.6 37.0 311 84-514 11-324 (325)
17 3c9x_A Trichoderma reesei aspa 100.0 1.5E-58 5.3E-63 469.2 35.1 312 85-513 12-329 (329)
18 1oew_A Endothiapepsin; hydrola 100.0 2.2E-58 7.4E-63 468.1 33.9 310 86-513 13-329 (329)
19 3fv3_A SAPP1P-secreted asparti 100.0 1.7E-57 5.8E-62 463.6 34.5 314 77-514 2-329 (339)
20 1ibq_A Aspergillopepsin; aspar 100.0 4.5E-57 1.5E-61 457.6 36.0 309 86-514 12-325 (325)
21 1izd_A Aspartic proteinase; su 100.0 2.9E-57 9.8E-62 458.6 33.2 311 79-514 8-323 (323)
22 2qzx_A Candidapepsin-5; aspart 100.0 5.7E-57 2E-61 460.2 35.6 315 77-514 2-331 (342)
23 1j71_A Candidapepsin, aspartic 100.0 4.4E-57 1.5E-61 459.5 34.2 309 78-514 3-324 (334)
24 3pvk_A Candidapepsin-2; hydrol 100.0 7.6E-57 2.6E-61 459.3 33.1 315 78-514 3-331 (342)
25 1bxo_A Protein (penicillopepsi 100.0 2.6E-57 9E-62 459.0 28.5 311 79-514 8-323 (323)
26 1wkr_A Polyporopepsin; hydrola 100.0 6E-56 2.1E-60 452.3 33.2 312 78-514 3-333 (340)
27 3lpj_A Beta-secretase 1; alzhe 100.0 4.5E-55 1.5E-59 462.6 29.4 324 81-514 67-420 (455)
28 2ewy_A Beta-secretase 2; BACE2 100.0 3.7E-54 1.3E-58 446.1 32.0 322 81-514 6-355 (383)
29 3vf3_A Beta-secretase 1; struc 100.0 9.3E-54 3.2E-58 445.9 30.1 323 82-514 22-374 (402)
30 2qp8_A Beta-secretase 1; BACE1 100.0 1.3E-53 4.5E-58 443.7 30.9 324 81-514 14-367 (395)
31 3aup_A SBG7S, BG, basic 7S glo 100.0 1.1E-52 3.8E-57 437.7 28.7 324 77-513 9-386 (403)
32 3vla_A EDGP; extracellular, in 100.0 6.7E-52 2.3E-56 431.9 25.4 335 76-513 7-398 (413)
33 1t6e_X Xylanase inhibitor; two 100.0 4.4E-49 1.5E-53 407.6 23.4 334 78-514 3-373 (381)
34 1b5f_A Protein (cardosin A); h 100.0 4.8E-48 1.7E-52 374.2 25.5 238 77-318 2-239 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 2.3E-44 7.8E-49 349.1 27.1 241 169-514 1-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 2.6E-23 9E-28 171.1 10.7 93 78-170 3-96 (97)
37 1b5f_B Protein (cardosin A); h 99.8 5.6E-21 1.9E-25 154.4 10.1 87 427-514 1-87 (87)
38 3rfi_A Asp; PSI, saposin, hydr 99.6 6.7E-16 2.3E-20 129.0 4.1 106 317-423 3-108 (108)
39 3bqp_A Proactivator polypeptid 96.9 0.00059 2E-08 52.9 3.2 47 385-434 2-48 (80)
40 2qyp_A Proactivator polypeptid 96.6 0.00093 3.2E-08 53.3 3.0 48 384-434 4-51 (91)
41 4ddj_A Saposin-A, protein A; s 96.5 0.0016 5.6E-08 50.8 3.6 41 385-425 3-43 (83)
42 2gtg_A Proactivator polypeptid 96.2 0.0031 1.1E-07 49.2 3.5 41 384-424 3-43 (83)
43 1l9l_A Granulysin; saposin fol 95.9 0.005 1.7E-07 46.9 3.1 37 387-424 3-39 (74)
44 1of9_A Pore-forming peptide am 95.4 0.0087 3E-07 46.0 3.0 40 385-425 2-41 (77)
45 1n69_A Saposin B; lipid bindin 95.4 0.01 3.5E-07 46.0 3.3 40 385-424 3-43 (81)
46 1nkl_A NK-lysin; saposin fold, 95.4 0.0073 2.5E-07 46.5 2.5 38 387-424 3-40 (78)
47 2js9_A Saposin-like protein fa 94.1 0.0066 2.3E-07 49.0 -0.8 50 384-435 20-69 (99)
48 2qyp_A Proactivator polypeptid 93.7 0.051 1.7E-06 43.0 3.7 39 321-359 46-84 (91)
49 2i1a_A DNA damage-inducible pr 93.1 0.1 3.5E-06 45.1 5.0 96 81-201 18-115 (148)
50 3bqp_A Proactivator polypeptid 92.2 0.089 3E-06 40.2 3.1 37 321-357 43-79 (80)
51 2i1a_A DNA damage-inducible pr 92.1 0.37 1.3E-05 41.5 7.4 26 486-511 109-134 (148)
52 2js9_A Saposin-like protein fa 90.6 0.057 2E-06 43.5 0.4 37 321-357 63-99 (99)
53 1nkl_A NK-lysin; saposin fold, 90.4 0.077 2.6E-06 40.7 1.0 37 321-357 41-77 (78)
54 2gtg_A Proactivator polypeptid 90.0 0.1 3.4E-06 40.4 1.4 38 321-358 45-82 (83)
55 3s8i_A Protein DDI1 homolog 1; 89.5 0.77 2.6E-05 39.7 6.8 26 486-511 108-133 (148)
56 3s8i_A Protein DDI1 homolog 1; 89.4 0.45 1.5E-05 41.2 5.2 91 87-201 22-114 (148)
57 1of9_A Pore-forming peptide am 88.6 0.097 3.3E-06 40.0 0.4 38 319-356 40-77 (77)
58 4ddj_A Saposin-A, protein A; s 87.0 0.14 4.9E-06 39.5 0.4 37 321-357 45-82 (83)
59 1n69_A Saposin B; lipid bindin 82.9 0.4 1.4E-05 36.8 1.3 36 321-357 45-80 (81)
60 1l9l_A Granulysin; saposin fol 78.3 0.65 2.2E-05 35.0 1.0 32 321-352 41-72 (74)
61 2hs1_A HIV-1 protease; ultra-h 76.7 2.8 9.5E-05 33.4 4.4 29 91-121 10-38 (99)
62 1fmb_A EIAV protease; hydrolas 75.1 2.6 8.8E-05 34.0 3.8 27 90-118 9-35 (104)
63 3ec0_A Protease; HIV-2, inhibi 71.6 4.2 0.00014 32.3 4.2 29 91-121 10-38 (99)
64 3liy_A Protease; hydrolase, hy 70.1 3.8 0.00013 33.3 3.7 32 91-122 12-46 (116)
65 2hah_A Protease, retropepsin; 60.7 7 0.00024 32.1 3.6 26 91-119 16-41 (116)
66 3sqf_A Protease; folded monome 55.5 11 0.00037 30.8 3.8 29 91-121 11-39 (114)
67 3s64_A AC-SLP-1, saposin-like 55.2 3.9 0.00013 31.7 1.1 51 306-356 36-87 (87)
68 3vcm_P Prorenin; aspartic prot 50.7 10 0.00036 24.9 2.5 23 29-51 7-29 (43)
69 3slz_A GAG-Pro-POL polyprotein 49.8 17 0.00058 30.5 4.3 30 89-120 22-51 (132)
70 3ka2_A [L-Ala51;Gly51']HIV-1 p 41.0 20 0.00069 32.3 3.6 29 89-119 8-36 (203)
71 2rsp_A RSV protease; hydrolase 40.2 24 0.00082 29.2 3.7 24 96-121 27-50 (124)
72 1bxo_A Protein (penicillopepsi 38.6 28 0.00095 33.6 4.6 42 255-306 3-44 (323)
73 1ibq_A Aspergillopepsin; aspar 35.7 30 0.001 33.4 4.3 41 256-306 3-43 (325)
74 1izd_A Aspartic proteinase; su 35.5 33 0.0011 33.1 4.6 41 256-306 4-44 (323)
75 1lya_A Cathepsin D; lysosomal 32.7 24 0.00083 27.5 2.5 33 266-306 12-44 (97)
76 1htr_P Progastricsin (Pro segm 29.1 31 0.0011 21.9 2.2 21 30-50 2-22 (43)
77 1mpp_A Pepsin; hydrolase(acid 27.3 50 0.0017 32.2 4.4 44 255-306 4-49 (361)
78 1tzs_P Activation peptide from 26.8 31 0.0011 20.7 1.8 21 29-49 2-22 (35)
79 1b5f_A Protein (cardosin A); h 25.7 73 0.0025 29.1 4.9 38 79-118 181-226 (239)
80 1oew_A Endothiapepsin; hydrola 24.6 62 0.0021 31.1 4.4 43 256-306 3-46 (329)
81 3c9x_A Trichoderma reesei aspa 23.5 66 0.0023 30.9 4.4 43 256-306 3-46 (329)
82 2apr_A Rhizopuspepsin; hydrola 21.8 78 0.0027 30.3 4.5 41 258-306 6-46 (325)
83 3ka2_A [L-Ala51;Gly51']HIV-1 p 21.0 73 0.0025 28.7 3.6 29 90-120 113-141 (203)
No 1
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=3.3e-86 Score=701.44 Aligned_cols=478 Identities=75% Similarity=1.291 Sum_probs=399.7
Q ss_pred EEEeeeeccCChhhhhhhchhhhhhHHHHhhhcccCCCCCCCCCCCceeEeceeccCceEEEEEEecCCCCeeEEEecCC
Q 010233 31 VRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTG 110 (514)
Q Consensus 31 ~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTG 110 (514)
+||||+|++..++.+.+.+......+.+ .+++. ....+.+...+||.|+.+.+|+++|+||||||++.|+||||
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTG 74 (478)
T 1qdm_A 1 VRIALKKRPIDRNSRVATGLSGGEEQPL---LSGAN---PLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTG 74 (478)
T ss_dssp CEEEEEECCCCHHHHHHHHTC----------------------CCSSCSGGGCCGGGCCEEEEEEETTTTEEEEEEEETT
T ss_pred CeeeeeeccchHHHHHhcchhhhhHHHH---Hhhcc---cccCcCCCceEEeEeccCCEEEEEEEECCCCeEEEEEEcCC
Confidence 4899999999988877655332211101 11110 11222345679999999999999999999999999999999
Q ss_pred CCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEEEeeeeecCceEEEEEecCCcccc
Q 010233 111 SSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFM 190 (514)
Q Consensus 111 Ss~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~ 190 (514)
|+++||+|..|..+..|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|++|+..++++.||++....+..|.
T Consensus 75 Ss~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~ 154 (478)
T 1qdm_A 75 SSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFL 154 (478)
T ss_dssp CCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEECCBSHHH
T ss_pred CcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCCeEEEEEEEEEEECCeEECCEEEEEEEecCCcccc
Confidence 99999999999645689999999999999999999999999999999999999999999999999999999987665555
Q ss_pred ccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCCCCCCcccceeEEecccccceE
Q 010233 191 VAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQ 270 (514)
Q Consensus 191 ~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~ 270 (514)
...++||||||++..+.....|++++|++||+|++++||+||.+..+....|+|+|||+|+++|.|++.|+|+.+.++|.
T Consensus 155 ~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~~~w~ 234 (478)
T 1qdm_A 155 VAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQ 234 (478)
T ss_dssp HCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEE
T ss_pred cccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCCCeEE
Confidence 66789999999999887777889999999999999999999988643345899999999999999999999999899999
Q ss_pred EEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCccccc
Q 010233 271 FNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKIC 350 (514)
Q Consensus 271 v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~ 350 (514)
|.+++|.|++..+.++..+..++|||||+++++|.+++++|.+++++.+.+...|+.++++|++.+++.+++++.|+++|
T Consensus 235 v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC 314 (478)
T 1qdm_A 235 FDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKIC 314 (478)
T ss_dssp EEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHH
T ss_pred EEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhh
Confidence 99999999999877666788999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCcee
Q 010233 351 SQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESA 430 (514)
Q Consensus 351 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~ 430 (514)
.+.|+|.+++.+.++++++.++++.+++++...++..|++|||++.|+|++|.+|.|+++|+++++++|+.++...|.|.
T Consensus 315 ~~iglC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~ 394 (478)
T 1qdm_A 315 SQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESA 394 (478)
T ss_dssp HHTTCC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCE
T ss_pred ccccccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEE
Confidence 99999999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEE
Q 010233 431 VDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGF 510 (514)
Q Consensus 431 ~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf 510 (514)
++|+.++.+|+|+|+|+|+.|+|+|++|+++...+....|+++|++++++++.++.||||+.|||++|+|||++++||||
T Consensus 395 v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGf 474 (478)
T 1qdm_A 395 VDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGF 474 (478)
T ss_dssp ECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEE
T ss_pred eecccccccccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEE
Confidence 99998889999999999999999999999987654456899999998876666789999999999999999999999999
Q ss_pred EEcC
Q 010233 511 AEAA 514 (514)
Q Consensus 511 a~~~ 514 (514)
|+++
T Consensus 475 A~a~ 478 (478)
T 1qdm_A 475 AKAA 478 (478)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 9986
No 2
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.6e-69 Score=557.70 Aligned_cols=368 Identities=43% Similarity=0.800 Sum_probs=319.5
Q ss_pred eEEEeeeeccCChhhhhhhchhhhhhHHHHhhhcccCCCCCC-CCC-CCceeEeceeccCceEEEEEEecCCCCeeEEEe
Q 010233 30 LVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNL-RDS-EDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIF 107 (514)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~l 107 (514)
++||||+|.++.|+.+.+++..++ +|+. |++...... .++ .....+||.|+.|.+|+++|+||||||++.|++
T Consensus 1 ~~~ipl~~~~s~r~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~ 75 (370)
T 3psg_A 1 LVKVPLVRKKSLRQNLIKDGKLKD---FLKT--HKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIF 75 (370)
T ss_dssp CEEEEEEECCCHHHHHHHTTCHHH---HHHH--CCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEE
T ss_pred CEEEEeEEcCcHHHHHHhcCcHHH---HHhh--hhcchhhhhccccccccceecceeccCCEEEEEEEEcCCCCEEEEEE
Confidence 479999999999888877776544 4432 222222111 111 135678999999999999999999999999999
Q ss_pred cCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEEEeeeeecCceEEEEEecCCc
Q 010233 108 DTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV 187 (514)
Q Consensus 108 DTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~ 187 (514)
||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|++|+..++++.||++....+.
T Consensus 76 DTGSs~lWV~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~ 154 (370)
T 3psg_A 76 DTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGS 154 (370)
T ss_dssp ETTCCCEEEEBTTCC-SGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCG
T ss_pred eCCCCccEEECCCCC-CcccCCCCCCCCccCcCcEECCcEEEEEeCCceEEEEEEEEEEeeCCcccCCeEEEEEEeeccc
Confidence 999999999999996 5689999999999999999999999999999999999999999999999999999999987665
Q ss_pred cccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCCCCCCcccceeEEeccccc
Q 010233 188 TFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKG 267 (514)
Q Consensus 188 ~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~ 267 (514)
.|....++||||||++..+....+|++++|++||+|++++||+||.+.. ..+|+|+|||+|+++|.|++.|+|+.+.+
T Consensus 155 ~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~D~~~y~g~l~~~pv~~~~ 232 (370)
T 3psg_A 155 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND--DSGSVVLLGGIDSSYYTGSLNWVPVSVEG 232 (370)
T ss_dssp GGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSEET
T ss_pred ccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCC--CCCeEEEEEeeChHhcCCcceeecccccc
Confidence 5667788999999999998878889999999999999999999999862 23899999999999999999999999999
Q ss_pred ceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcc
Q 010233 268 YWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPK 347 (514)
Q Consensus 268 ~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~ 347 (514)
+|.|.+++|+|+++.+. +..+..++|||||+++++|.+++++|.+++++.
T Consensus 233 ~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~----------------------------- 282 (370)
T 3psg_A 233 YWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS----------------------------- 282 (370)
T ss_dssp TEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCE-----------------------------
T ss_pred eeEEEEeEEEECCEEEe-cCCCceEEEcCCCCcEECCHHHHHHHHHHhCCc-----------------------------
Confidence 99999999999998764 567889999999999999999999999999765
Q ss_pred cccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCC
Q 010233 348 KICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMG 427 (514)
Q Consensus 348 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g 427 (514)
+...|
T Consensus 283 ---------------------------------------------------------------------------~~~~g 287 (370)
T 3psg_A 283 ---------------------------------------------------------------------------ENSDG 287 (370)
T ss_dssp ---------------------------------------------------------------------------ECTTC
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 12356
Q ss_pred ceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCe
Q 010233 428 ESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELR 507 (514)
Q Consensus 428 ~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~r 507 (514)
.|.++|+.+..+|+|+|+|+|++++|++++|+++ . .+.|+.+|+..+.+.+.++.||||++|||++|+|||++++|
T Consensus 288 ~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~-~---~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~r 363 (370)
T 3psg_A 288 EMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ-D---DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNK 363 (370)
T ss_dssp CEECCGGGGGGCCCEEEEETTEEEEECHHHHEEE-C---SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTE
T ss_pred cEEEECCCcccCCcEEEEECCEEEEECHHHhccc-C---CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCE
Confidence 7999999888999999999999999999999998 2 24699999988765445568999999999999999999999
Q ss_pred EEEEEcC
Q 010233 508 VGFAEAA 514 (514)
Q Consensus 508 iGfa~~~ 514 (514)
||||+|+
T Consensus 364 iGfA~a~ 370 (370)
T 3psg_A 364 VGLAPVA 370 (370)
T ss_dssp EEEEEBC
T ss_pred EEEEEcC
Confidence 9999986
No 3
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=4.5e-69 Score=555.65 Aligned_cols=373 Identities=40% Similarity=0.766 Sum_probs=298.4
Q ss_pred ceEEEeeeeccCChhhhhhhch-hhhhhHHHHhhhcccCCCCCCCCCCCceeEeceeccCceEEEEEEecCCCCeeEEEe
Q 010233 29 GLVRIGLKKMKLDPNNRLAARL-ESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIF 107 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~l 107 (514)
.++||||+|++..++.+.+.+. ..+ .++....++.. .........+||.|+.+.+|+++|+||||||++.|+|
T Consensus 7 ~~~~i~l~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~ 80 (383)
T 2x0b_A 7 TFKRIFLKRMPSIRESLKERGVDMAR---LGPEWSQPMKR---LTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVF 80 (383)
T ss_dssp --------------------------------------------------CEEEEEEETTTEEEEEEEETTTTEEEEEEE
T ss_pred cEEEEEEEECCcHHHHHHHhCchHHH---HHHhhcccccc---ccccCCcceEeeeecCCCEEEEEEEECCCCcEEEEEE
Confidence 4789999999887776655543 221 22111000000 0000134568999999999999999999999999999
Q ss_pred cCCCCceeEeCCCCCC-CcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEEEEEEEEEeeeeecCceEEEEEecCC
Q 010233 108 DTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPG 186 (514)
Q Consensus 108 DTGSs~~Wv~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~ 186 (514)
||||+++||+|..|.. ...|..|+.|+|++|+||+..++.|.+.|++|++.|.+++|+|++|+..++ +.||++....+
T Consensus 81 DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~g 159 (383)
T 2x0b_A 81 DTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPA 159 (383)
T ss_dssp ETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEE-EEEEEEEECCH
T ss_pred eCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCccEEEEEEeeEEEEcCceEE-EEEEEEEecCC
Confidence 9999999999999962 358999999999999999999999999999999999999999999999999 99999998766
Q ss_pred ccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCC--CCceEEECCCCCCCcccceeEEecc
Q 010233 187 VTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED--EGGEIVFGGVDPNHYKGKHTYVPVT 264 (514)
Q Consensus 187 ~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~--~~G~L~fGg~D~~~~~g~l~~~pv~ 264 (514)
..|....++||||||++..+.....|++++|++||+|++++||+||.+..+.. .+|+|+|||+|+++|.|++.|+|+.
T Consensus 160 ~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~ 239 (383)
T 2x0b_A 160 LPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI 239 (383)
T ss_dssp HHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBS
T ss_pred cccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcC
Confidence 55556788999999999988778889999999999999999999998864321 3799999999999999999999999
Q ss_pred cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhcc
Q 010233 265 QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEA 344 (514)
Q Consensus 265 ~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~ 344 (514)
+.++|+|.+++|+|+++.+. +..+..+++||||+++++|.+++++|.+++++.
T Consensus 240 ~~~~w~v~l~~i~v~~~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-------------------------- 292 (383)
T 2x0b_A 240 KTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLMEALGAK-------------------------- 292 (383)
T ss_dssp STTSCEEEECEEEESSCCCB-STTCEEEEECTTCSSEEECHHHHHHHHHHHTCE--------------------------
T ss_pred CCceEEEEEeEEEeCCceEE-cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCc--------------------------
Confidence 99999999999999998753 567889999999999999999999999999765
Q ss_pred CcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 010233 345 HPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPS 424 (514)
Q Consensus 345 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
+
T Consensus 293 ------------------------------------------------------------------------------~- 293 (383)
T 2x0b_A 293 ------------------------------------------------------------------------------K- 293 (383)
T ss_dssp ------------------------------------------------------------------------------E-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 1
Q ss_pred CCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCC
Q 010233 425 PMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFG 504 (514)
Q Consensus 425 ~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~ 504 (514)
..|.|.++|+.++.+|+|+|+|+|+.|+|+|++|+++....+...|+++|+..+.+++.++.||||++|||++|+|||++
T Consensus 294 ~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~ 373 (383)
T 2x0b_A 294 RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRR 373 (383)
T ss_dssp CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETT
T ss_pred cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECC
Confidence 24678999998889999999999999999999999986544456899999988765556679999999999999999999
Q ss_pred CCeEEEEEcC
Q 010233 505 ELRVGFAEAA 514 (514)
Q Consensus 505 ~~riGfa~~~ 514 (514)
++|||||+++
T Consensus 374 ~~rIGfA~a~ 383 (383)
T 2x0b_A 374 NNRIGFALAR 383 (383)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEeEEEcC
Confidence 9999999986
No 4
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=5.6e-64 Score=513.65 Aligned_cols=332 Identities=49% Similarity=0.902 Sum_probs=292.4
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
+...+||.|+.+.+|+++|.||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 11 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G 89 (351)
T 1tzs_A 11 QSAKEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTYSQPGQSFSIQYGTG 89 (351)
T ss_dssp ---CCTTGGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SGGGTTSCCBCGGGCTTCBCCSCEEEEESSSC
T ss_pred CccceeceecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC-ccccCCCCcCCcccCcceEECCCEEEEEeCCC
Confidence 34458999988999999999999999999999999999999999996 45899899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCC
Q 010233 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRN 235 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~ 235 (514)
++.|.+++|+|++|+..++++.||++....+..|....++||||||++..+.....|++++|++||.|++++||+||.+.
T Consensus 90 s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~ 169 (351)
T 1tzs_A 90 SLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSN 169 (351)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCC
T ss_pred CeEEEEEEeEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCC
Confidence 99999999999999999999999999876665555667899999999988877778899999999999999999999887
Q ss_pred CCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHh
Q 010233 236 QQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAI 315 (514)
Q Consensus 236 ~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i 315 (514)
.+....|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|+|++..+. +..+..++|||||+++++|.+++++|.+++
T Consensus 170 ~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~ 248 (351)
T 1tzs_A 170 PEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMF-CSEGCQAIVDTGTSLITGPSDKIKQLQNAI 248 (351)
T ss_dssp C--CTTCEEEETSCCGGGBCSCCEEEECSEETTEEEEEEEEEETTEEEE-CTTCEEEEECTTCSSEEECHHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCHHHcCCceEEEecCCCceEEEEeCEEEECCceEE-cCCCceEEeccCCcceeCCHHHHHHHHHHh
Confidence 4333479999999999999999999999989999999999999998753 456789999999999999999999999998
Q ss_pred cCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHH
Q 010233 316 GASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAV 395 (514)
Q Consensus 316 ~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
++.
T Consensus 249 ~~~----------------------------------------------------------------------------- 251 (351)
T 1tzs_A 249 GAA----------------------------------------------------------------------------- 251 (351)
T ss_dssp TCE-----------------------------------------------------------------------------
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 654
Q ss_pred HHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceE
Q 010233 396 VWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFT 475 (514)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~ 475 (514)
... |.|.++|+.+..+|+|+|+|+|++++|++++|+++........|+++|+
T Consensus 252 ---------------------------~~~-g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~C~~~~~ 303 (351)
T 1tzs_A 252 ---------------------------PVD-GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQ 303 (351)
T ss_dssp ---------------------------ECS-SSEEECGGGGGGSCCEEEEETTEEEEECTTTSEECC-----CCEEESEE
T ss_pred ---------------------------ccC-CeEEEeCCCCccCCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEE
Confidence 012 6788999988889999999999999999999999865433468999999
Q ss_pred eccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 476 AMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 476 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
..+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus 304 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~ 342 (351)
T 1tzs_A 304 GLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAV 342 (351)
T ss_dssp ECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred ECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECC
Confidence 876544456789999999999999999999999999975
No 5
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=8.3e-64 Score=510.58 Aligned_cols=332 Identities=43% Similarity=0.865 Sum_probs=297.1
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCC-CcccCCCCcccCCCCCceeecCeEEEEEecC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGT 154 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 154 (514)
+...+||.|+.+.+|+++|.||||||++.|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.|.+.|++
T Consensus 6 ~~~~~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~ 85 (341)
T 3k1w_A 6 TTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYST 85 (341)
T ss_dssp BCEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETT
T ss_pred CCccccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECC
Confidence 667899999999999999999999999999999999999999999963 3479889999999999999999999999999
Q ss_pred CeEEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecC
Q 010233 155 GAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNR 234 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~ 234 (514)
|++.|.+++|+|+||+..+ ++.||++.......+....++||||||++..+.....|++++|++||.|++++||+||.+
T Consensus 86 gs~~G~~~~D~v~ig~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~ 164 (341)
T 3k1w_A 86 GTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR 164 (341)
T ss_dssp EEEEEEEEEEEEEETTEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECC
T ss_pred cEEEEEEEEEEEEECCcee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeC
Confidence 9999999999999999999 999999998765435566789999999999887778899999999999999999999998
Q ss_pred CC--CCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHH
Q 010233 235 NQ--QEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMIN 312 (514)
Q Consensus 235 ~~--~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~ 312 (514)
.. +....|.|+|||+|+++|.|+++|+|+.+.++|.|.+++|.+++..+. +.....++|||||+++++|++++++|.
T Consensus 165 ~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~~~~~~i~ 243 (341)
T 3k1w_A 165 DSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLM 243 (341)
T ss_dssp CC-----CCEEEEESSCCGGGEEEEEEEEECSSTTSCEEEECCEEETTEEEE-CTTCEEEEECTTCSSEEECHHHHHHHH
T ss_pred CCCcCCCCCCEEEECccChHHccCceEEEecCCCCEEEEEEeEEEECCEEee-cCCCCEEEEECCCChhcCCHHHHHHHH
Confidence 64 223489999999999999999999999999999999999999998653 456789999999999999999999999
Q ss_pred HHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhH
Q 010233 313 HAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACE 392 (514)
Q Consensus 313 ~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++++..
T Consensus 244 ~~~~~~~------------------------------------------------------------------------- 250 (341)
T 3k1w_A 244 EALGAKK------------------------------------------------------------------------- 250 (341)
T ss_dssp HHHTCEE-------------------------------------------------------------------------
T ss_pred HHcCCee-------------------------------------------------------------------------
Confidence 9997650
Q ss_pred HHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEE
Q 010233 393 MAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~ 472 (514)
...| |.+||+....+|+|+|+|+|++++|+|++|+++........|+.
T Consensus 251 -------------------------------~~~g-~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~C~~ 298 (341)
T 3k1w_A 251 -------------------------------RLFD-YVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTL 298 (341)
T ss_dssp -------------------------------CSSC-EEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTSEEEB
T ss_pred -------------------------------cCCC-eEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCCeEEe
Confidence 1235 99999988889999999999999999999999865544678999
Q ss_pred ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 473 GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.|+..+.+...++.||||++|||++|+|||++++|||||+++
T Consensus 299 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 299 AIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp SEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999877555556789999999999999999999999999985
No 6
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1.4e-63 Score=504.94 Aligned_cols=322 Identities=44% Similarity=0.827 Sum_probs=289.4
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
+...+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 2 ~~~~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G 80 (323)
T 3cms_A 2 EVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTG 80 (323)
T ss_dssp CCEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE
T ss_pred CcceeeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCC-cccccCCCCCCCccCCCeEECCcEEEEEeCCC
Confidence 35668999999999999999999999999999999999999999995 46899899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCC
Q 010233 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRN 235 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~ 235 (514)
++.|.+++|+|++|+.+++++.||++....+..|.....+||||||++..+.....|++++|++||.|++++||+||.+.
T Consensus 81 s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~ 160 (323)
T 3cms_A 81 SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN 160 (323)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTT
T ss_pred CeEEEEEEEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCC
Confidence 99999999999999999999999999987654454567899999999998877788999999999999999999999876
Q ss_pred CCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHh
Q 010233 236 QQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAI 315 (514)
Q Consensus 236 ~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i 315 (514)
.. .|+|+|||+|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. +..+..++|||||+++++|.+++++|.+++
T Consensus 161 ~~---~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~ 236 (323)
T 3cms_A 161 GQ---ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAI 236 (323)
T ss_dssp SS---CEEEEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE-STTCEEEEECTTCCSEEECHHHHHHHHHHH
T ss_pred CC---CEEEEECCCChhhccCceEEEECccCCeEEEEEeeEEECCEEee-cCCCcEEEEecCCccEeCCHHHHHHHHHHh
Confidence 32 49999999999999999999999999999999999999998764 356789999999999999999999999998
Q ss_pred cCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHH
Q 010233 316 GASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAV 395 (514)
Q Consensus 316 ~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
++..
T Consensus 237 ~~~~---------------------------------------------------------------------------- 240 (323)
T 3cms_A 237 GATQ---------------------------------------------------------------------------- 240 (323)
T ss_dssp TCEE----------------------------------------------------------------------------
T ss_pred CCee----------------------------------------------------------------------------
Confidence 6540
Q ss_pred HHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceE
Q 010233 396 VWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFT 475 (514)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~ 475 (514)
...|.|.++|+.++.+|+|+|+|+|++++|+|++|+++ ....|+.+|+
T Consensus 241 ----------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~----~~~~C~~~i~ 288 (323)
T 3cms_A 241 ----------------------------NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQ 288 (323)
T ss_dssp ----------------------------ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEE----ETTEEEESEE
T ss_pred ----------------------------cCCCcEEEECCCCccCceEEEEECCEEEEECHHHhccC----CCCEEEEEEE
Confidence 12456889999888999999999999999999999998 2368999898
Q ss_pred eccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 476 AMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 476 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
..+ .++.||||++|||++|+|||++++|||||+++
T Consensus 289 ~~~----~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 289 SEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EC-------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred eCC----CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 653 34689999999999999999999999999986
No 7
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=2.2e-63 Score=504.99 Aligned_cols=326 Identities=45% Similarity=0.869 Sum_probs=291.5
Q ss_pred eeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeE
Q 010233 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI 157 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~ 157 (514)
..+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++
T Consensus 3 ~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~ 81 (329)
T 1dpj_A 3 HDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG-SLACFLHSKYDHEASSSYKANGTEFAIQYGTGSL 81 (329)
T ss_dssp EEEECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEE
T ss_pred cceeeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCC-CcccCCcCcCCcccCcCeEECCcEEEEEECCceE
Confidence 468999999999999999999999999999999999999999996 3469889999999999999999999999999999
Q ss_pred EEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCC
Q 010233 158 AGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQ 237 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~ 237 (514)
.|.+++|+|++|+..++++.||+++...+..|.....+||||||++..+.....|++++|++||+|++++||+||.+...
T Consensus 82 ~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~ 161 (329)
T 1dpj_A 82 EGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSK 161 (329)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGG
T ss_pred EEEEEEEEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCC
Confidence 99999999999999999999999988654334455789999999998887777889999999999999999999986531
Q ss_pred -CCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhc
Q 010233 238 -EDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316 (514)
Q Consensus 238 -~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~ 316 (514)
....|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|+|++..+. ..+..++|||||+++++|++++++|.++++
T Consensus 162 ~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~ 239 (329)
T 1dpj_A 162 DTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAE--LESHGAAIDTGTSLITLPSGLAEMINAEIG 239 (329)
T ss_dssp TCSSSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE--CSSCEEEECTTCSCEEECHHHHHHHHHHHT
T ss_pred CCCCCcEEEEcCCChhhcCCceEEEEcCCCceEEEEeeeEEECCeEec--CCCccEEeeCCCCcEECCHHHHHHHHHHhC
Confidence 22479999999999999999999999999999999999999998763 356889999999999999999999999986
Q ss_pred CCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHH
Q 010233 317 ASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVV 396 (514)
Q Consensus 317 ~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+.
T Consensus 240 ~~------------------------------------------------------------------------------ 241 (329)
T 1dpj_A 240 AK------------------------------------------------------------------------------ 241 (329)
T ss_dssp CE------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 54
Q ss_pred HHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEe
Q 010233 397 WMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTA 476 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~ 476 (514)
+...|.|.++|+....+|+|+|+|+|++++|+|++|+++.. ..|+++|+.
T Consensus 242 --------------------------~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----~~C~~~~~~ 291 (329)
T 1dpj_A 242 --------------------------KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITP 291 (329)
T ss_dssp --------------------------ECTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEET----TEEEECEEE
T ss_pred --------------------------cCCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEecCC----CEEEEEEEe
Confidence 02356789999988889999999999999999999999853 589999988
Q ss_pred ccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 477 MDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 477 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus 292 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 292 MDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp CCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 76544456789999999999999999999999999985
No 8
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=1.9e-63 Score=503.53 Aligned_cols=319 Identities=45% Similarity=0.852 Sum_probs=284.3
Q ss_pred eEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEE
Q 010233 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA 158 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~ 158 (514)
.+||.|+.+.+|+++|+||||||+++|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.
T Consensus 2 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~ 80 (320)
T 4aa9_A 2 REPLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCK-SNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGSME 80 (320)
T ss_dssp ------CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEE
T ss_pred CccceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCC-ccccCCCCCCCCCCCcCeEcCCcEEEEEECCcEEE
Confidence 46899999999999999999999999999999999999999996 45798899999999999999999999999999999
Q ss_pred EEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCC
Q 010233 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|++|+..++++.||++....+..+....++||||||++..+.....+++++|++||.|++++||+||.+.
T Consensus 81 G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~--- 157 (320)
T 4aa9_A 81 GFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN--- 157 (320)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSS---
T ss_pred EEEEEEEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCCC---
Confidence 99999999999999999999999987664455567899999999998877788999999999999999999999985
Q ss_pred CCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 010233 239 DEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (514)
Q Consensus 239 ~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~ 318 (514)
...|+|+|||+|+++|.|++.|+|+.+.++|.|.+++|.++++.+. +.....++|||||+++++|++++++|.+++++.
T Consensus 158 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~ 236 (320)
T 4aa9_A 158 GQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT 236 (320)
T ss_dssp SSCCEEEETCCCGGGEEEEEEEEECSSBTTBEEEECEEEETTEEEE-STTCEEEEECTTCSSEEEEHHHHHHHHHHTTCE
T ss_pred CCCeEEEEcccCHHHccCceEEEEcccCCceEEEEeEEEECCEEec-cCCCcEEEEECCCCcEECCHHHHHHHHHHhCCc
Confidence 2389999999999999999999999999999999999999998775 346789999999999999999999999998654
Q ss_pred CcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHH
Q 010233 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T Consensus 237 -------------------------------------------------------------------------------- 236 (320)
T 4aa9_A 237 -------------------------------------------------------------------------------- 236 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEecc
Q 010233 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
....|.|.++|+....+|+|+|+|+|++++|++++|+.+. ...|+.+|+..
T Consensus 237 ------------------------~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~----~~~C~~~i~~~- 287 (320)
T 4aa9_A 237 ------------------------ENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKD----QGFCTSGFQGD- 287 (320)
T ss_dssp ------------------------ECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEEE----TTEEEESEEEE-
T ss_pred ------------------------ccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccCC----CCeEEEEEEcC-
Confidence 0234679999998888999999999999999999999762 35899988862
Q ss_pred CCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 479 VPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
..++.||||++|||++|+|||++++|||||+++
T Consensus 288 ---~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 288 ---NNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp ---TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ---CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 234679999999999999999999999999986
No 9
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=4e-63 Score=501.99 Aligned_cols=322 Identities=43% Similarity=0.794 Sum_probs=290.5
Q ss_pred eEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEE
Q 010233 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA 158 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~ 158 (514)
.+||.|+.+.+|+++|.||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.
T Consensus 3 ~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~ 81 (324)
T 1am5_A 3 TEQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMR 81 (324)
T ss_dssp EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEE
T ss_pred eeeeecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC-cccccCCCcCCCccCCCeEeCCcEEEEEECCCCeE
Confidence 47999999999999999999999999999999999999999996 45798899999999999999999999999999999
Q ss_pred EEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCC
Q 010233 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|++|+..++++.||++....+..+.....+||||||++..+.....|++++|++||.|++++||+||.+.+.
T Consensus 82 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~- 160 (324)
T 1am5_A 82 GILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGA- 160 (324)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTC-
T ss_pred EEEEECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecCCCC-
Confidence 9999999999999999999999998766445556789999999998887777889999999999999999999988632
Q ss_pred CCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 010233 239 DEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (514)
Q Consensus 239 ~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~ 318 (514)
..|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. +.+ ..++|||||+++++|++++++|.+++++.
T Consensus 161 -~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~ 237 (324)
T 1am5_A 161 -NGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAA-CEG-CQAIVDTGTSKIVAPVSALANIMKDIGAS 237 (324)
T ss_dssp -SCEEEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECC-CCC-EEEEECTTCSSEEECTTTHHHHHHHHTCE
T ss_pred -CCcEEEECccCHHHcCCceEEEecCCCcEEEEEEeEEEECCceee-ccC-ceEEEecCCccEECCHHHHHHHHHHhCCc
Confidence 389999999999999999999999988999999999999998753 334 89999999999999999999999988542
Q ss_pred CcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHH
Q 010233 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T Consensus 238 -------------------------------------------------------------------------------- 237 (324)
T 1am5_A 238 -------------------------------------------------------------------------------- 237 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEecc
Q 010233 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...|.|.++|+.+..+|+|+|+|+|++++|+|++|+++. ...|+++|+..+
T Consensus 238 -------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~ 288 (324)
T 1am5_A 238 -------------------------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD----QAFCTSGLGSSG 288 (324)
T ss_dssp -------------------------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES----SSCEEECEEECC
T ss_pred -------------------------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccC----CCeEEEEEEECc
Confidence 113568899998889999999999999999999999985 358999999876
Q ss_pred CCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 479 VPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus 289 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 289 VPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp SCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred cCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 544456789999999999999999999999999986
No 10
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=4e-63 Score=503.05 Aligned_cols=325 Identities=46% Similarity=0.892 Sum_probs=291.2
Q ss_pred eEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEE
Q 010233 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIA 158 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~ 158 (514)
.+||. +.+.+|+++|.||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.
T Consensus 4 ~~~l~-~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~ 81 (329)
T 1htr_B 4 YEPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLT 81 (329)
T ss_dssp CCGGG-GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEE
T ss_pred eeeeE-EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCCCCcCCCccCCCeEECCcEEEEEeCCCCeE
Confidence 36888 88999999999999999999999999999999999996 34798899999999999999999999999999999
Q ss_pred EEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCC
Q 010233 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|++|+..++++.||++....+..+.....+||||||++..+.....|++++|++||.|++++||+||.+....
T Consensus 82 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~ 161 (329)
T 1htr_B 82 GFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGS 161 (329)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSS
T ss_pred EEEEeeeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCC
Confidence 99999999999999999999999877654455567899999999998877788999999999999999999999886321
Q ss_pred CCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 010233 239 DEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (514)
Q Consensus 239 ~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~ 318 (514)
..|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|+|+++.+..+.....++|||||+++++|++++++|.+++++.
T Consensus 162 -~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~ 240 (329)
T 1htr_B 162 -SGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 240 (329)
T ss_dssp -EEEEEEESSCCGGGEEEEEEEEEBCSSSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCE
T ss_pred -CCcEEEEcccCHHHcCCceEEEECCCCceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCe
Confidence 3799999999999999999999999899999999999999987643456789999999999999999999999998664
Q ss_pred CcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHH
Q 010233 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.
T Consensus 241 ~------------------------------------------------------------------------------- 241 (329)
T 1htr_B 241 E------------------------------------------------------------------------------- 241 (329)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEecc
Q 010233 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...|.|.++|+.+..+|+|+|+|+|++++|+|++|+++.. +.|+.+|+..+
T Consensus 242 -------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~ 292 (329)
T 1htr_B 242 -------------------------DEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTY 292 (329)
T ss_dssp -------------------------CTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECS----SCEEESEEEEC
T ss_pred -------------------------cCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCC----CEEEEEEEECC
Confidence 1245688999988889999999999999999999999854 38999998876
Q ss_pred CCCCCCC-cEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 479 VPPPRGP-LWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 479 ~~~~~~~-~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.+.+.++ .||||++|||++|+|||++++|||||+++
T Consensus 293 ~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 293 LSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp CCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 5444456 89999999999999999999999999985
No 11
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=3e-62 Score=513.64 Aligned_cols=321 Identities=31% Similarity=0.580 Sum_probs=288.5
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. +..|..++.|+|++|+||+..++.|.+.|++|
T Consensus 125 ~~~~~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~-s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdG 203 (451)
T 3qvc_A 125 EFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSKSKTYEKDDTPVKLTSKAG 203 (451)
T ss_dssp --CCCCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCC-SGGGTTSCCBCGGGCTTCEEEEEEEEEECSSE
T ss_pred cCCccceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCC-ccccCCCCCCCCCCCcccccCCCEEEEEECCC
Confidence 55678999999999999999999999999999999999999999996 46899999999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEe----cCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEE
Q 010233 156 AIAGFFSYDSVKVGDLVVKDQEFIEATR----EPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFW 231 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~----~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~ 231 (514)
++.|.+++|+|++|+..++ +.||++.. .++ +.....+||||||++..+.....|++++|++||.|++++||+|
T Consensus 204 s~~G~~~~Dtv~igg~~v~-~~Fg~a~~t~~~~~~--f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~ 280 (451)
T 3qvc_A 204 TISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPF--YSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIY 280 (451)
T ss_dssp EEEEEEEEEEEEETTEEEE-EEEEEEEEEEECTTH--HHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEE
T ss_pred EEEEEEEEEEEEECCEEEE-EEEEEEEeccccCCC--ccCCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEE
Confidence 9999999999999999999 99999987 443 4455679999999999887778899999999999999999999
Q ss_pred ecCCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010233 232 LNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 232 l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
|.+.. ...|.|+|||+|+++|.|++.|+|+.+.++|.|.++ |.|++. +.....++|||||+++++|++++++|
T Consensus 281 L~~~~--~~~G~l~fGgiD~s~y~G~l~~~pv~~~~~w~v~l~-I~Vgg~----~~~~~~aiiDSGTt~i~lP~~~~~~i 353 (451)
T 3qvc_A 281 LPPEN--KNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLD-VHFGNV----SSKKANVILDSATSVITVPTEFFNQF 353 (451)
T ss_dssp CCTTC--TTEEEEEESSCCGGGEEEEEEEEECSSTTSSEEEEE-EEETTE----EEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EcCCC--CCCCEEEECCcchhhcCCceEEEEcccCCeeEEEEE-EEECCc----cCCCceEEEeCCCccccCCHHHHHHH
Confidence 99873 238999999999999999999999999999999999 999998 34567899999999999999999999
Q ss_pred HHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhh
Q 010233 312 NHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSAC 391 (514)
Q Consensus 312 ~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+++++..
T Consensus 354 ~~~i~a~~------------------------------------------------------------------------ 361 (451)
T 3qvc_A 354 VESASVFK------------------------------------------------------------------------ 361 (451)
T ss_dssp HTTTTCEE------------------------------------------------------------------------
T ss_pred HHHcCCee------------------------------------------------------------------------
Confidence 99886640
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEE
Q 010233 392 EMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCI 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~ 471 (514)
....|.|.+||+ +..+|+|+|+|+|++++|||++|+++..+.....|+
T Consensus 362 -------------------------------~~~~g~y~v~C~-~~~~P~itf~fgg~~i~lp~~~yi~~~~~~~~~~C~ 409 (451)
T 3qvc_A 362 -------------------------------VPFLSLYVTTCG-NTKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCM 409 (451)
T ss_dssp -------------------------------CTTSSCEEEETT-CTTCCCEEEEETTEEEEECHHHHEEECTTTSTTEEE
T ss_pred -------------------------------cCCCCeEEeeCC-cCcCCcEEEEECCEEEEEcHHHheeecccCCCCeEE
Confidence 123577999999 789999999999999999999999987654557899
Q ss_pred EceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 472 SGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 472 ~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
++|++.+.+ ++.||||++|||++|+|||++++|||||+++
T Consensus 410 ~~i~~~~~~---~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 410 LNIVPIDLE---KNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp ECEEECCCS---TTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEeCCCC---CCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999875421 5689999999999999999999999999986
No 12
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=2.9e-62 Score=504.53 Aligned_cols=321 Identities=34% Similarity=0.683 Sum_probs=287.6
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
....+||.|+.+..|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 50 ~~~~~pl~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G 128 (375)
T 1miq_A 50 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 128 (375)
T ss_dssp TTBCCCGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCC-SSGGGGSCCBCGGGCTTCEEEEEEEEEEETTE
T ss_pred CcceEEcccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCC-cccccCCCcCCCccCCceEECCcEEEEEeCCC
Confidence 44568999988999999999999999999999999999999999995 45899899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEe----cCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEE
Q 010233 156 AIAGFFSYDSVKVGDLVVKDQEFIEATR----EPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFW 231 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~----~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~ 231 (514)
++.|.+++|+|++|+..+++ .||++.. .. .|....++||||||++..+.....|++++|++||.|++++||+|
T Consensus 129 s~~G~~~~Dtv~ig~~~v~~-~Fg~~~~~~~~~~--~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~ 205 (375)
T 1miq_A 129 TVKGFFSKDLVTLGHLSMPY-KFIEVTDTDDLEP--IYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFY 205 (375)
T ss_dssp EEEEEEEEEEEEETTEEEEE-EEEEEEECGGGTT--HHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEE
T ss_pred eEEEEEEEEEEEEcCceECc-EEEEEEecccccc--ccccCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEE
Confidence 99999999999999999999 9999998 43 45456789999999999888778899999999999999999999
Q ss_pred ecCCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHH
Q 010233 232 LNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMI 311 (514)
Q Consensus 232 l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l 311 (514)
|.+.+. ..|.|+|||+|+++|.|++.|+|+.+.++|.|.++ |+|+++.+ .+..++|||||+++++|.+++++|
T Consensus 206 L~~~~~--~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~-i~v~g~~~----~~~~aiiDSGTs~~~lP~~~~~~l 278 (375)
T 1miq_A 206 LPVHDV--HAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----EKANVIVDSGTTTITAPSEFLNKF 278 (375)
T ss_dssp CCTTCT--TEEEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE----EEEEEEECTTBSSEEECHHHHHHH
T ss_pred ecCCCC--CCeEEEEcccCHHHcCCceEEEecCCCceEEEEEE-EEECCEEc----ccceEEecCCCccEEcCHHHHHHH
Confidence 988632 48999999999999999999999999999999999 99999876 467899999999999999999999
Q ss_pred HHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhh
Q 010233 312 NHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSAC 391 (514)
Q Consensus 312 ~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+++++.
T Consensus 279 ~~~~~~~------------------------------------------------------------------------- 285 (375)
T 1miq_A 279 FANLNVI------------------------------------------------------------------------- 285 (375)
T ss_dssp HHHHTCE-------------------------------------------------------------------------
T ss_pred HHHhCCc-------------------------------------------------------------------------
Confidence 9999664
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEE
Q 010233 392 EMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCI 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~ 471 (514)
.+...|.|.++|+. ..+|+|+|+|+|+.++|+|++|+++....+...|+
T Consensus 286 ------------------------------~~~~~g~~~~~C~~-~~~P~i~f~f~g~~~~l~~~~yi~~~~~~g~~~C~ 334 (375)
T 1miq_A 286 ------------------------------KVPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCM 334 (375)
T ss_dssp ------------------------------ECTTSSCEEEETTC-TTCCCEEEECSSCEEEECGGGSEEESSSSSCSEEE
T ss_pred ------------------------------ccCCCCeEEEECCC-CCCCcEEEEECCEEEEECHHHhEeeccCCCCCeEE
Confidence 01235678999997 78999999999999999999999986543446899
Q ss_pred EceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 472 SGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 472 ~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
++|+..+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 335 ~~~~~~~~~---~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 335 ITMLPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp ESEEECCSS---SSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCC---CCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 999876521 2689999999999999999999999999985
No 13
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=1.4e-61 Score=507.97 Aligned_cols=322 Identities=33% Similarity=0.647 Sum_probs=287.2
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
....+||.|+.+..|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 126 ~~~~~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~-~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdG 204 (453)
T 2bju_A 126 SNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSG 204 (453)
T ss_dssp CSEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-STTGGGSCCBCGGGCTTCEEEEEEEEEECSSS
T ss_pred CCCceeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCC-ccccCCCCcCCCccCCceeECCcEEEEEcCCC
Confidence 34679999999999999999999999999999999999999999996 45899899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEecC--CccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEec
Q 010233 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREP--GVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~--~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~ 233 (514)
++.|.+++|+|++|+.+++ +.||++.... +..+.....+||||||++..+....+|++++|++||.|++++||+||.
T Consensus 205 s~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~ 283 (453)
T 2bju_A 205 TVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLP 283 (453)
T ss_dssp EEEEEEEEEEEEETTEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECC
T ss_pred CeEEEEEEEEEEEeCcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeC
Confidence 9999999999999999999 9999999876 444555678999999999988777889999999999999999999999
Q ss_pred CCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010233 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
+.+ ...|.|+|||+|+++|.|++.|+|+.+.++|.|.++ |+|++ .+ + .+..++|||||+++++|.+++++|.+
T Consensus 284 ~~~--~~~G~l~fGg~D~~~y~G~l~~~pv~~~~~w~V~l~-I~Vgg-~~--~-~~~~aIiDSGTsl~~lP~~~~~~l~~ 356 (453)
T 2bju_A 284 VHD--KHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLD-AHVGN-IM--L-EKANCIVDSGTSAITVPTDFLNKMLQ 356 (453)
T ss_dssp BTT--TBCEEEEESSCCGGGEEEEEEEEEEEEETTEEEEEE-EEETT-EE--E-EEEEEEECTTCCSEEECHHHHHHHTT
T ss_pred CCC--CCCeEEEECCCCHHHcCCceEEEecCCCceEEEEEE-EEECc-EE--e-ccccEEEcCCCCeEecCHHHHHHHHH
Confidence 862 348999999999999999999999998999999999 99999 33 3 56789999999999999999999988
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010233 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++++.
T Consensus 357 ~i~~~--------------------------------------------------------------------------- 361 (453)
T 2bju_A 357 NLDVI--------------------------------------------------------------------------- 361 (453)
T ss_dssp TSSCE---------------------------------------------------------------------------
T ss_pred HhCCc---------------------------------------------------------------------------
Confidence 77553
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCC-ceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEE
Q 010233 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMG-ESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCIS 472 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g-~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~ 472 (514)
+...| .|.++|+. ..+|+|+|+|+|++++|||++|+++....+...|++
T Consensus 362 -----------------------------~~~~g~~~~v~C~~-~~~P~itf~fgg~~~~l~~~~yi~~~~~~g~~~C~~ 411 (453)
T 2bju_A 362 -----------------------------KVPFLPFYVTLCNN-SKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCML 411 (453)
T ss_dssp -----------------------------ECTTSSCEEEETTC-TTCCCEEEECSSCEEEECHHHHEEECTTTSTTEEEE
T ss_pred -----------------------------ccCCCceEEEecCC-CCCCcEEEEECCEEEEECHHHhEeecccCCCceEEE
Confidence 12245 68999997 689999999999999999999999865434568999
Q ss_pred ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 473 GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+|++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 412 ~~~~~~~---~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 412 NIIGLDF---PVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp CEEECCC---SSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCC---CCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9987652 13589999999999999999999999999975
No 14
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=5.4e-61 Score=493.51 Aligned_cols=326 Identities=30% Similarity=0.517 Sum_probs=287.1
Q ss_pred CceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC
Q 010233 76 DTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G 155 (514)
....+||.|+.+..|+++|.||||+|++.|+|||||+++||+|..|.....|..++.|+|++|+||+..++.|.+.|++|
T Consensus 6 ~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G 85 (361)
T 1mpp_A 6 SVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTG 85 (361)
T ss_dssp CEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSC
T ss_pred ccceEEeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCc
Confidence 56678999999999999999999999999999999999999999994234799899999999999999999999999999
Q ss_pred eEEEEEEEEEEEEeeeeecCceEEEEEecCC-----ccccccccceeeeccccccccCC------CcchHHHHHHcCCCC
Q 010233 156 AIAGFFSYDSVKVGDLVVKDQEFIEATREPG-----VTFMVAKFDGILGLGFQEISVGN------AVPVWYNMVKQGLIQ 224 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~-----~~~~~~~~~GIlGLg~~~~s~~~------~~~~l~~L~~qg~i~ 224 (514)
++.|.+++|+|+||+..++++.||++....+ ..+.....+||||||++..+... .++++++|++||.|.
T Consensus 86 s~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~ 165 (361)
T 1mpp_A 86 GANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLIS 165 (361)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSS
T ss_pred eEEEEEEEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCC
Confidence 9999999999999999999999999998755 34555678999999998877543 778999999999999
Q ss_pred CCeEEEEecCCCCCCCCceEEECCCCCCCcccceeEEeccccc----ceEEEEceEEECCeeccccCCCceEE-EcCCCC
Q 010233 225 DPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKG----YWQFNMGDVLIGGKPTGYCAGGCSAI-ADSGTS 299 (514)
Q Consensus 225 ~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~----~w~v~l~~i~v~g~~~~~~~~~~~ai-iDSGtt 299 (514)
+++||+||.+. ...|.|+|||+|+++|.|++.|+|+.+.. +|.|.+++|+|+++.+. +.....++ |||||+
T Consensus 166 ~~~FS~~l~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~-~~~~~~ai~iDSGTt 241 (361)
T 1mpp_A 166 SPVFSVYMNTN---DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAV-SFDGAQAFTIDTGTN 241 (361)
T ss_dssp SSEEEEECCCS---SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEEETTCC
T ss_pred CcEEEEEecCC---CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEECCeeec-cCCCCEEEEECCCCC
Confidence 99999999875 23799999999999999999999997765 99999999999998764 33567899 999999
Q ss_pred CcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccc
Q 010233 300 LLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKS 379 (514)
Q Consensus 300 ~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 379 (514)
++++|.+++++|.+++++..
T Consensus 242 ~~~lP~~~~~~l~~~~~~~~------------------------------------------------------------ 261 (361)
T 1mpp_A 242 FFIAPSSFAEKVVKAALPDA------------------------------------------------------------ 261 (361)
T ss_dssp SEEEEHHHHHHHHHHHCTTC------------------------------------------------------------
T ss_pred ceeCCHHHHHHHHHHhCCcc------------------------------------------------------------
Confidence 99999999999999997640
Q ss_pred cCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCC-CeEEEEE--C-----CEEE
Q 010233 380 SGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSM-PIVSFTI--G-----GKVF 451 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~-P~l~f~f--~-----g~~~ 451 (514)
+...|.|.++|..+..+ |+|+|+| + |+++
T Consensus 262 -------------------------------------------~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~~ 298 (361)
T 1mpp_A 262 -------------------------------------------TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTIDV 298 (361)
T ss_dssp -------------------------------------------EEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEEE
T ss_pred -------------------------------------------cCCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeEE
Confidence 12245688999977788 9999999 8 8999
Q ss_pred EeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 452 DLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 452 ~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+|+|++|+++... ....|+++|+.. .++.||||++|||++|+|||++++|||||+++
T Consensus 299 ~i~~~~y~~~~~~-~~~~C~~~i~~~-----~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 355 (361)
T 1mpp_A 299 SVPISKMLLPVDK-SGETCMFIVLPD-----GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355 (361)
T ss_dssp EEEGGGGEEECSS-SSCEEEESEEEE-----SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EECHHHhEEecCC-CCCeeEEEEEeC-----CCCCEEEChHHhccEEEEEECCCCEEEEEEcc
Confidence 9999999998643 246899988864 24589999999999999999999999999975
No 15
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=7e-61 Score=486.49 Aligned_cols=318 Identities=29% Similarity=0.515 Sum_probs=283.3
Q ss_pred ceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCccc--CCCCcccCCCCCceeecCeEEEEEecC
Q 010233 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVAC--YFHSKYKSSQSSTYKKNGESASIQYGT 154 (514)
Q Consensus 77 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C--~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 154 (514)
...+||.|+.+..|+++|+|| ||++.|++||||+++||+|..|. ...| ..++.|+|++| ||+..++.|.+.|++
T Consensus 6 ~~~~~l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~~~y~~~~S-T~~~~~~~~~i~Yg~ 81 (330)
T 1yg9_A 6 PLYKLVHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECV-GGACVCPNLQKYEKLKP-KYISDGNVQVKFFDT 81 (330)
T ss_dssp CSCSCEEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCC-SGGGGSTTCCCCCCSSC-EEEEEEEEEEEETTT
T ss_pred eeEeeeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC-CccCcccccCccCCCCC-ceEECCCEEEEEECC
Confidence 344789999899999999999 89999999999999999999996 4579 88899999999 999999999999999
Q ss_pred CeEEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccc-cCCCcchHHHHHHcCCCCCCeEEEEec
Q 010233 155 GAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEIS-VGNAVPVWYNMVKQGLIQDPVFSFWLN 233 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s-~~~~~~~l~~L~~qg~i~~~~FSl~l~ 233 (514)
|++.|.+++|+|++|+..++++.||++... +..|....++||||||++..+ ....+|++++|++||.| +++||+||.
T Consensus 82 Gs~~G~~~~Dtv~ig~~~~~~~~fg~~~~~-~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i-~~~FS~~l~ 159 (330)
T 1yg9_A 82 GSAVGRGIEDSLTISQLTTSQQDIVLADEL-SQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLI-APVFSIHHA 159 (330)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEE-CTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSS-CSEEEEEEE
T ss_pred ceEEEEEEEEEEEECCEEEcCeEEEEEEEc-ccccccccCceEEEcCcchhccccCCCCHHHHHHhcCCC-CceEEEEEc
Confidence 999999999999999999999999999987 434555678999999999887 66778899999999999 999999998
Q ss_pred CCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010233 234 RNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
+..+....|+|+|||+|+++|.|++.|+|+.+.++|.|.+++|.|+++.+. ..+..++|||||+++++|++++++|.+
T Consensus 160 ~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~--~~~~~aiiDSGTs~~~lP~~~~~~l~~ 237 (330)
T 1yg9_A 160 RFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINE 237 (330)
T ss_dssp ECTTSCEEEEEEETSCCGGGEEEEEEEEEBSCTTSCCEECSEEEETTEEEE--CTTCEEEECTTCSSEEEEHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCcCHHHccCceEEEECCCCCEEEEEeCeEEECCEEEc--CCCcEEEEecCCccccCCHHHHHHHHH
Confidence 764333379999999999999999999999999999999999999998763 567889999999999999999999999
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010233 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++++..
T Consensus 238 ~~~~~~-------------------------------------------------------------------------- 243 (330)
T 1yg9_A 238 AIGCVV-------------------------------------------------------------------------- 243 (330)
T ss_dssp HHTCEE--------------------------------------------------------------------------
T ss_pred HhCCcc--------------------------------------------------------------------------
Confidence 996640
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCC--ce-eeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceE
Q 010233 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMG--ES-AVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQC 470 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g--~~-~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C 470 (514)
...| .| .+||+.+..+|+|+|+|+|++++|+|++|+++. ...|
T Consensus 244 ------------------------------~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y~~~~----~~~C 289 (330)
T 1yg9_A 244 ------------------------------EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQN----GNLC 289 (330)
T ss_dssp ------------------------------EECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHHEEEE----TTEE
T ss_pred ------------------------------cCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHhcccC----CCcE
Confidence 1124 57 899998778999999999999999999999986 3589
Q ss_pred EEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 471 ISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 471 ~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+++|+.. +.++.||||++|||++|+|||++++|||||+++
T Consensus 290 ~~~i~~~----~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 290 YSGFQPC----GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EESEEEE----TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeC----CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9999864 234689999999999999999999999999985
No 16
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1e-58 Score=469.63 Aligned_cols=311 Identities=36% Similarity=0.658 Sum_probs=271.5
Q ss_pred eccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-EEEEEE
Q 010233 84 NYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFS 162 (514)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~~G~~~ 162 (514)
+..+..|+++|+||||+|++.|++||||+++||+|..|..+ |..++.|+|++|+||+..++.|.+.|++|+ +.|.++
T Consensus 11 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c--~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~~ 88 (325)
T 2apr_A 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC--GSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILA 88 (325)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC--CTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH--hcCCCCCCcccCCCeeeCCCEEEEEECCCCCEEEEEE
Confidence 44588999999999999999999999999999999999744 677889999999999999999999999998 799999
Q ss_pred EEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc-CCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCC
Q 010233 163 YDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV-GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEG 241 (514)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~-~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~ 241 (514)
+|+|++++..++++.||++....+ .|.....+||||||++..+. ...++++++|++||+|++++||+||.+.. ....
T Consensus 89 ~D~v~~g~~~v~~~~fg~~~~~~~-~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~-~~~~ 166 (325)
T 2apr_A 89 KDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAK-NGGG 166 (325)
T ss_dssp EEEEEETTEEEEEEEEEEEEEECH-HHHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGG-GTCC
T ss_pred EEEEEECCEEECcEEEEEEeccCc-ccccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecCCC-CCCC
Confidence 999999999999999999987654 24444589999999998764 35678999999999999999999997642 1247
Q ss_pred ceEEECCCCCCCcccceeEEecc-cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCc
Q 010233 242 GEIVFGGVDPNHYKGKHTYVPVT-QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (514)
Q Consensus 242 G~L~fGg~D~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~ 320 (514)
|.|+|||+|+++|.|++.|+|+. ..++|.|.+++|+|++ .+ +.....++|||||+++++|+++|+++.+++.+.-
T Consensus 167 G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~-~~--~~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~- 242 (325)
T 2apr_A 167 GEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGT-ST--VASSFDGILDTGTTLLILPNNIAASVARAYGASD- 242 (325)
T ss_dssp EEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETT-EE--EECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEE-
T ss_pred CEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECC-Ee--cCCCceEEEecCCccEECCHHHHHHHHHHHhccc-
Confidence 99999999999999999999996 5789999999999999 33 4567899999999999999999999999986540
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHH
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 243 -------------------------------------------------------------------------------- 242 (325)
T 2apr_A 243 -------------------------------------------------------------------------------- 242 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCC
Q 010233 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
+. .|.|.++|+. ..+|+|+|+|+|.+++||+++|+++.. ...|+..|+..+
T Consensus 243 ----------------------~~-~g~~~~~C~~-~~~p~i~f~f~g~~~~ip~~~~~~~~~---~~~C~~~i~~~~-- 293 (325)
T 2apr_A 243 ----------------------NG-DGTYTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-- 293 (325)
T ss_dssp ----------------------CS-SSCEEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEE---TTEEEESEEEES--
T ss_pred ----------------------CC-CCeEEEECCC-CCCCcEEEEECCEEEEECHHHEEEcCC---CCeEEEEEEcCC--
Confidence 01 1568899984 348999999998899999999998754 468999887543
Q ss_pred CCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 481 PPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.+.||||++|||++|+|||++++|||||+++
T Consensus 294 ---~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 294 ---WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp ---SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ---CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 4579999999999999999999999999985
No 17
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.5e-58 Score=469.17 Aligned_cols=312 Identities=29% Similarity=0.470 Sum_probs=269.1
Q ss_pred ccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceee-cCeEEEEEecCCe-EEEEEE
Q 010233 85 YMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK-NGESASIQYGTGA-IAGFFS 162 (514)
Q Consensus 85 ~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Yg~G~-~~G~~~ 162 (514)
+.+..|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|+|++|+||+. .++.|.+.|++|+ +.|.++
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~ 90 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP-KSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDVY 90 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC-ccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEEEEEE
Confidence 45789999999999999999999999999999999996 23466788999999999999 6899999999998 899999
Q ss_pred EEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc---CCCcchHHHHHHcCCCCCCeEEEEecCCCCCC
Q 010233 163 YDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV---GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQED 239 (514)
Q Consensus 163 ~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~---~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~ 239 (514)
+|+|++|+..++++.||++....+..+.....+||||||++..+. ...++++++|+++ |++++||+||.+.
T Consensus 91 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~l~~~---- 164 (329)
T 3c9x_A 91 TDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASS--LAEPLFTADLRHG---- 164 (329)
T ss_dssp EEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTT--SSSSEEEEECCSS----
T ss_pred EEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHh--cCCCEEEEEecCC----
Confidence 999999999999999999997654322235679999999998775 2467899999986 8899999999874
Q ss_pred CCceEEECCCCCCCcccceeEEecc-cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCC
Q 010233 240 EGGEIVFGGVDPNHYKGKHTYVPVT-QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGAS 318 (514)
Q Consensus 240 ~~G~L~fGg~D~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~ 318 (514)
..|.|+|||+|+++|.|++.|+|+. +.++|.|.+++|+|+++.+ +.....++|||||+++++|++++++|.+++.+.
T Consensus 165 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~--~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a 242 (329)
T 3c9x_A 165 QNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKL--NRNSIDGIADTGTTLLLLDDNVVDAYYANVQSA 242 (329)
T ss_dssp SCEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCC--CSCCEEEEECTTCCSEEECHHHHHHHHTTCTTC
T ss_pred CCcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEec--cCCCceEEEECCCCcEeCCHHHHHHHHHhCCCc
Confidence 2799999999999999999999996 5789999999999999876 356789999999999999999999998887433
Q ss_pred CcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHH
Q 010233 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.
T Consensus 243 ~------------------------------------------------------------------------------- 243 (329)
T 3c9x_A 243 Q------------------------------------------------------------------------------- 243 (329)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEecc
Q 010233 399 QNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
.+...+.|.++|+ ..+|+|+|+|+|++++||+++|++.........|+..|+..+
T Consensus 244 -----------------------~~~~~~~~~~~C~--~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~ 298 (329)
T 3c9x_A 244 -----------------------YDNQQEGVVFDCD--EDLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQSSS 298 (329)
T ss_dssp -----------------------EETTTTEEEEETT--CCCCCEEEEETTEEEEECGGGGEEEESSTTCSEEEESEEECT
T ss_pred -----------------------EcCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeeccCCCCCeEEEEEEcCC
Confidence 0122467889999 589999999999999999999998754333468999887542
Q ss_pred CCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEc
Q 010233 479 VPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEA 513 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~ 513 (514)
..+.||||++|||++|+|||++++|||||+.
T Consensus 299 ----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 299 ----GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp ----TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred ----CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 3468999999999999999999999999984
No 18
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=2.2e-58 Score=468.09 Aligned_cols=310 Identities=28% Similarity=0.458 Sum_probs=266.7
Q ss_pred cCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceee-cCeEEEEEecCCe-EEEEEEE
Q 010233 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK-NGESASIQYGTGA-IAGFFSY 163 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~-~~~~~~~~Yg~G~-~~G~~~~ 163 (514)
.+..|+++|.||||+|++.|++||||+++||+|..|. ...| .++.|+|++|+||+. .++.|.+.|++|+ +.|.+++
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~-~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~~ 90 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEV-XQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYT 90 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-GGGC--CCCBCGGGCTTCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC-cccc-ccCccCCccCccceecCCCeEEEEeCCCCcEEEEEEE
Confidence 4789999999999999999999999999999999996 2345 688999999999998 6899999999998 8999999
Q ss_pred EEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc---CCCcchHHHHHHcCCCCCCeEEEEecCCCCCCC
Q 010233 164 DSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV---GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240 (514)
Q Consensus 164 D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~---~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
|+|++|+..++++.||++....+..+.....+||||||++..+. ...++++++|++| |.+++||+||.+. .
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~~----~ 164 (329)
T 1oew_A 91 DTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKAS--LDSPVFTADLGYH----A 164 (329)
T ss_dssp EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTT--SSSSEEEEECCSS----S
T ss_pred EEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHh--ccCcEEEEEccCC----C
Confidence 99999999999999999997654322225679999999998775 2467899999887 8899999999874 2
Q ss_pred CceEEECCCCCCCcccceeEEecc-cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCC
Q 010233 241 GGEIVFGGVDPNHYKGKHTYVPVT-QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319 (514)
Q Consensus 241 ~G~L~fGg~D~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~ 319 (514)
.|.|+|||+|+++|.|++.|+|+. +.++|.|.+++|+|+++.+ +.....++|||||+++++|++++++|.+++.+..
T Consensus 165 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~--~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~ 242 (329)
T 1oew_A 165 PGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTF--KSTSIDGIADTGTTLLYLPATVVSAYWAQVSGAK 242 (329)
T ss_dssp CEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCC--EEEEEEEEECTTCCSEEECHHHHHHHHTTSTTCE
T ss_pred CeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeec--cCCCceEEEeCCCCCEECCHHHHHHHHHhCCCcE
Confidence 799999999999999999999996 6789999999999999865 3456789999999999999999999988874330
Q ss_pred cccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHH
Q 010233 320 VVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
T Consensus 243 -------------------------------------------------------------------------------- 242 (329)
T 1oew_A 243 -------------------------------------------------------------------------------- 242 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccC
Q 010233 400 NQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~ 479 (514)
.+...|.|.++|+ ..+|+|+|+|+|++++||+++|+++........|+..|+..+
T Consensus 243 ----------------------~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~- 297 (329)
T 1oew_A 243 ----------------------SSSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA- 297 (329)
T ss_dssp ----------------------EETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEEST-
T ss_pred ----------------------EcCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeeecCCCCCeEEEEEEeCC-
Confidence 0123467889999 579999999999999999999998754333468999887542
Q ss_pred CCCCCCcEEeCHhhhcceEEEEeC-CCCeEEEEEc
Q 010233 480 PPPRGPLWILGDVFMGRYHTVFDF-GELRVGFAEA 513 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~-~~~riGfa~~ 513 (514)
..+.||||++|||++|+|||+ +++|||||++
T Consensus 298 ---~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 298 ---GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp ---TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred ---CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 346899999999999999999 9999999984
No 19
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=1.7e-57 Score=463.57 Aligned_cols=314 Identities=28% Similarity=0.472 Sum_probs=273.4
Q ss_pred ceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCC--CCCCcccCCCCcccCCCCCceeecCeEEEEEecC
Q 010233 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN--CYFSVACYFHSKYKSSQSSTYKKNGESASIQYGT 154 (514)
Q Consensus 77 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~--C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~ 154 (514)
...+||.+. +..|+++|.||||||++.|++||||+++||++.. |..+..|..++.|+|++|+||+..++.|.+.|++
T Consensus 2 ~i~~~l~~~-~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~ 80 (339)
T 3fv3_A 2 SISLSLINE-GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGD 80 (339)
T ss_dssp CEEEEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTT
T ss_pred ceeeEEEcC-CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECC
Confidence 356788887 6799999999999999999999999999999664 6544589989999999999999999999999999
Q ss_pred C-eEEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc----------CCCcchHHHHHHcCCC
Q 010233 155 G-AIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV----------GNAVPVWYNMVKQGLI 223 (514)
Q Consensus 155 G-~~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~----------~~~~~~l~~L~~qg~i 223 (514)
| .+.|.+++|+|+||+..++++.||++..... .+||||||++..+. ...++++.+|++||.|
T Consensus 81 gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~-------~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i 153 (339)
T 3fv3_A 81 GSTSQGTWGKDTVTINGVSITGQQIADVTQTSV-------DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKI 153 (339)
T ss_dssp SCEEEEEEEEEEEEETTEEEEEEEEEEEEEESS-------SSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSC
T ss_pred CceEEEEEEEEEEEECCEEECceEEEEEEecCC-------CceeEEecCccccccccccccccCccCCcHHHHHHHCCCC
Confidence 9 5899999999999999999999999987643 48999999998753 2345689999999999
Q ss_pred CCCeEEEEecCCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCccc
Q 010233 224 QDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAG 303 (514)
Q Consensus 224 ~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~l 303 (514)
++++||+||.+.. ...|+|+|||+|+++|.|++.|+|+....+|.|.+++|.+++..+.. ...++|||||+++++
T Consensus 154 ~~~~fsl~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~---~~~~iiDSGtt~~~l 228 (339)
T 3fv3_A 154 RTNAYSLYLNSPS--AETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYF 228 (339)
T ss_dssp SSSEEEEECCCTT--CSEEEEEETEEETTSBSSCCEEEEBCCSSSCEEEEEEEEESSCEEEE---EEEEEECTTBSSEEE
T ss_pred CCceEEEEECCCC--CCCeEEEEeeechHHeecceEEEecccCccEEEEEEEEEECCEeecC---CccEEEeCCCCCEec
Confidence 9999999998753 23899999999999999999999999889999999999999987743 367999999999999
Q ss_pred CHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCcc
Q 010233 304 PTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVL 383 (514)
Q Consensus 304 P~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (514)
|++++++|.+++++.. +
T Consensus 229 P~~~~~~i~~~~~~~~---------------------------------------~------------------------ 245 (339)
T 3fv3_A 229 PSDFAAQLADKAGARL---------------------------------------V------------------------ 245 (339)
T ss_dssp CHHHHHHHHHHHTCEE---------------------------------------E------------------------
T ss_pred CHHHHHHHHHHcCCEE---------------------------------------c------------------------
Confidence 9999999999997650 0
Q ss_pred ccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEE-CCEEEEeCcccceEee
Q 010233 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTI-GGKVFDLSPEEYILKV 462 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f-~g~~~~l~~~~y~~~~ 462 (514)
..+...+.|.++|+. ..+|+|+|+| +|++++||+++|+++.
T Consensus 246 -------------------------------------~~~~~~~~~~~~C~~-~~~p~i~f~f~~g~~~~v~~~~~~~~~ 287 (339)
T 3fv3_A 246 -------------------------------------QVARDQYLYFIDCNT-DTSGTTVFNFGNGAKITVPNTEYVYQN 287 (339)
T ss_dssp -------------------------------------EEETTEEEEEECTTC-CCCSEEEEEETTSCEEEEEGGGGEEEC
T ss_pred -------------------------------------cccccCceEEEecCC-CCCCcEEEEECCCCEEEECHHHheeeC
Confidence 000124578999996 4689999999 5899999999999875
Q ss_pred cCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 463 GEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 463 ~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
.. ..|.++|+. .+.||||++|||++|+|||++++|||||+++
T Consensus 288 ~~---~~C~~~i~~-------~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 329 (339)
T 3fv3_A 288 GD---GTCLWGIQP-------SDDTILGDNFLRHAYLLYNLDANTISIAQVK 329 (339)
T ss_dssp SS---SCEEESEEE-------CSSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CC---CeEEEEEEe-------CCcEEeChHHHhCEEEEEECCCCEEEEEecC
Confidence 32 579998885 2469999999999999999999999999985
No 20
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=4.5e-57 Score=457.65 Aligned_cols=309 Identities=28% Similarity=0.433 Sum_probs=267.1
Q ss_pred cCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-EEEEEEEE
Q 010233 86 MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-IAGFFSYD 164 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~~G~~~~D 164 (514)
.+.+|+++|+|| ||++.|++||||+++||+|..|. ...|..++.|+|++|+ ++..++.|.+.|++|+ +.|.+++|
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~-~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~~D 87 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELP-SSEQTGHDLYTPSSSA-TKLSGYSWDISYGDGSSASGDVYRD 87 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSC-HHHHTTSCCCBCCSSC-EECTTCBEEEECSSSCEEEEEEEEE
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCC-ccccCCCCCCCchhcC-CccCCCEEEEEeCCCCEEEEEEEEe
Confidence 478999999999 89999999999999999999996 2356778999999999 7778999999999998 89999999
Q ss_pred EEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc---CCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCC
Q 010233 165 SVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV---GNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEG 241 (514)
Q Consensus 165 ~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~---~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~ 241 (514)
+|++|+..++++.||++....+..+....++||||||++..+. ...++++++|+++ |.+++||+||.+. ..
T Consensus 88 ~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~l~~~----~~ 161 (325)
T 1ibq_A 88 TVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKHD----AP 161 (325)
T ss_dssp EEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEEEETT----EE
T ss_pred EEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHh--cCCcEEEEEecCC----CC
Confidence 9999999999999999998654322235679999999998775 3567899999987 8899999999874 27
Q ss_pred ceEEECCCCCCCcccceeEEecc-cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCc
Q 010233 242 GEIVFGGVDPNHYKGKHTYVPVT-QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGV 320 (514)
Q Consensus 242 G~L~fGg~D~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~ 320 (514)
|.|+|||+|+++|.|++.|+|+. +.++|.|.+++|+|+++.+ +.....++|||||+++++|++++++|.+++.+..
T Consensus 162 G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~--~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~- 238 (325)
T 1ibq_A 162 GVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSS--SSSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ- 238 (325)
T ss_dssp EEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCC--BSCCEEEEECTTCCSEEECHHHHHHHHTTSTTCB-
T ss_pred ceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeec--cCCCceEEEeCCCCcEeCCHHHHHHHHHhCCCce-
Confidence 99999999999999999999996 5789999999999999866 4567899999999999999999999999884320
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHH
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 239 -------------------------------------------------------------------------------- 238 (325)
T 1ibq_A 239 -------------------------------------------------------------------------------- 238 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCC
Q 010233 401 QLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
.+...|.|.++|+ ..+|+|+|+|+|++++||+++|+++........|+..|+..+
T Consensus 239 ---------------------~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~-- 293 (325)
T 1ibq_A 239 ---------------------ESYEAGGYVFSCS--TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQSNS-- 293 (325)
T ss_dssp ---------------------CCSSSSSCEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEECT--
T ss_pred ---------------------EcCcCCeEEEEcC--CCCCcEEEEECCEEEEECHHHhcccccCCCCCeEEEEEEcCC--
Confidence 0123467889999 589999999999999999999998754323468999887642
Q ss_pred CCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 481 PPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
..+.||||++|||++|+|||++++|||||++|
T Consensus 294 --~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 294 --GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp --TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred --CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 34689999999999999999999999999986
No 21
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=2.9e-57 Score=458.61 Aligned_cols=311 Identities=28% Similarity=0.422 Sum_probs=267.9
Q ss_pred eEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-E
Q 010233 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-I 157 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~ 157 (514)
..|+. .+.+|+++|+|| ||++.|++||||+++||+|..|. ...|..++.|+|++|+ ++..++.|.+.|++|+ +
T Consensus 8 ~~~~~--~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~-~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~ 81 (323)
T 1izd_A 8 TNPTS--NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTP-SSERSGHDYYTPGSSA-QKIDGATWSISYGDGSSA 81 (323)
T ss_dssp EEECG--GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC-HHHHTTCCCBCCCTTC-EEEEEEEEEEECTTSCEE
T ss_pred eeEcC--CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCC-cccccCCCCCCccccC-CccCCCeEEEEcCCCCeE
Confidence 34553 478999999999 79999999999999999999996 2356788999999999 7778899999999998 8
Q ss_pred EEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc---CCCcchHHHHHHcCCCCCCeEEEEecC
Q 010233 158 AGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV---GNAVPVWYNMVKQGLIQDPVFSFWLNR 234 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~---~~~~~~l~~L~~qg~i~~~~FSl~l~~ 234 (514)
.|.+++|+|++|+.+++++.||+++...+..+....++||||||++.++. ...++++++|++| |.+++||+||.+
T Consensus 82 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~L~~ 159 (323)
T 1izd_A 82 SGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSS--LSEPIFAVALKH 159 (323)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEECCT
T ss_pred EEEEEEEEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHh--ccCcEEEEEccC
Confidence 99999999999999999999999998655322235679999999998775 3567899999987 899999999987
Q ss_pred CCCCCCCceEEECCCCCCCcccceeEEecc-cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010233 235 NQQEDEGGEIVFGGVDPNHYKGKHTYVPVT-QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 235 ~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
. ..|+|+|||+|+++|.|++.|+|+. +.++|.|.+++|+|++ .+ +..+..++|||||+++++|++++++|.+
T Consensus 160 ~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~--~~~~~~aiiDSGTs~~~lp~~~~~~i~~ 232 (323)
T 1izd_A 160 N----APGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DS--SSDSITGIADTGTTLLLLDDSIVDAYYE 232 (323)
T ss_dssp T----SCEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EE--ECCCEEEEECTTCCSEEECHHHHHHHHT
T ss_pred C----CCCEEEECCcCccccccceEEEECCCCCceEEEEECeEEECC-cc--cCCCceEEEeCCCcceeCCHHHHHHHHH
Confidence 4 2799999999999999999999996 6789999999999999 44 5667899999999999999999999998
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010233 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++.+..
T Consensus 233 ~i~ga~-------------------------------------------------------------------------- 238 (323)
T 1izd_A 233 QVNGAS-------------------------------------------------------------------------- 238 (323)
T ss_dssp TSTTCE--------------------------------------------------------------------------
T ss_pred hCCCcE--------------------------------------------------------------------------
Confidence 874320
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEc
Q 010233 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISG 473 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (514)
.+...|.|.+||+ +.+|+|+|+|+|++++||+++|+++... ...|+..
T Consensus 239 ----------------------------~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~~--~~~C~~~ 286 (323)
T 1izd_A 239 ----------------------------YDSSQGGYVFPSS--ASLPDFSVTIGDYTATVPGEYISFADVG--NGQTFGG 286 (323)
T ss_dssp ----------------------------EETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEECS--TTEEEES
T ss_pred ----------------------------EcCcCCEEEEECC--CCCceEEEEECCEEEecCHHHeEEecCC--CCeEEEE
Confidence 0123467899999 5899999999999999999999987532 4689998
Q ss_pred eEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 474 FTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 474 i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
|+..+ ..+.||||++|||++|+|||++++|||||++|
T Consensus 287 i~~~~----~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 287 IQSNS----GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp EEECT----TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEcCC----CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 88642 34689999999999999999999999999986
No 22
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=5.7e-57 Score=460.19 Aligned_cols=315 Identities=26% Similarity=0.435 Sum_probs=271.2
Q ss_pred ceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCC--CCCC------CcccCCCCcccCCCCCceeecCeEE
Q 010233 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPST--NCYF------SVACYFHSKYKSSQSSTYKKNGESA 148 (514)
Q Consensus 77 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~--~C~~------~~~C~~~~~f~~~~SsT~~~~~~~~ 148 (514)
...+||.| .+..|+++|+||||+|++.|+|||||+++||++. .|.. ...|..++.|+|++|+||+..++.|
T Consensus 2 ~v~~~l~~-~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~ 80 (342)
T 2qzx_A 2 PVAVTLHN-EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRF 80 (342)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEE
T ss_pred ceeEEEec-CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcE
Confidence 35678888 4789999999999999999999999999999866 6752 2478888999999999999999999
Q ss_pred EEEecCCe-EEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccC--CCcchHHHHHHcCCCCC
Q 010233 149 SIQYGTGA-IAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVG--NAVPVWYNMVKQGLIQD 225 (514)
Q Consensus 149 ~~~Yg~G~-~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~--~~~~~l~~L~~qg~i~~ 225 (514)
.+.|++|+ +.|.+++|+|++|+..++++.||++.... ..+||||||++..+.. ...+++.+|++||.|++
T Consensus 81 ~i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~ 153 (342)
T 2qzx_A 81 DIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWSTS-------ARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGK 153 (342)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC-------SSSCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSS
T ss_pred EEEeCCCCeEEEEEEEEEEEECCEEecceEEEEEEecC-------CCcCEEEEccccccCCCccCccHHHHHHHCCCcCc
Confidence 99999998 68999999999999999999999998653 4589999999887542 34578999999999999
Q ss_pred CeEEEEecCCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCH
Q 010233 226 PVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305 (514)
Q Consensus 226 ~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~ 305 (514)
++||+||.+.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+. .+..++|||||+++++|+
T Consensus 154 ~~Fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~---~~~~aiiDSGTt~~~lP~ 228 (342)
T 2qzx_A 154 AAYSLYLNSAE--ASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVD---ANTNVLLDSGTTISYFTR 228 (342)
T ss_dssp SEEEEECCCTT--CSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEEECH
T ss_pred cEEEEEeCCCC--CCCeEEEECccchhhEecceEEEeccCCceEEEEEeEEEECCEecC---CCcCEEEeCCCCCEEcCH
Confidence 99999998752 2379999999999999999999999988899999999999998764 246799999999999999
Q ss_pred HHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCcccc
Q 010233 306 TVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNN 385 (514)
Q Consensus 306 ~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (514)
+++++|.+++++...
T Consensus 229 ~~~~~l~~~~~~~~~----------------------------------------------------------------- 243 (342)
T 2qzx_A 229 SIVRNILYAIGAQMK----------------------------------------------------------------- 243 (342)
T ss_dssp HHHHHHHHHHTCEEE-----------------------------------------------------------------
T ss_pred HHHHHHHHHhCCeee-----------------------------------------------------------------
Confidence 999999999976510
Q ss_pred ccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEE-CCEEEEeCcccceEeec-
Q 010233 386 AMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTI-GGKVFDLSPEEYILKVG- 463 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f-~g~~~~l~~~~y~~~~~- 463 (514)
..+...+.|.++|+ .+|.|+|+| +|++++|++++|+++..
T Consensus 244 -----------------------------------~~~~~~~~~~~~C~---~~p~i~f~f~~g~~~~i~~~~~~~~~~~ 285 (342)
T 2qzx_A 244 -----------------------------------FDSAGNKVYVADCK---TSGTIDFQFGNNLKISVPVSEFLFQTYY 285 (342)
T ss_dssp -----------------------------------ECTTSCEEEEECTT---CCCEEEEEETTTEEEEEEGGGGEECCBC
T ss_pred -----------------------------------eccCCCcEEEEECC---CCCcEEEEECCCcEEEEcHHHhcccccc
Confidence 00112347889998 489999999 79999999999998743
Q ss_pred --CCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 464 --EGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 464 --~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
......|+..|+.. +.||||++|||++|+|||++++|||||+++
T Consensus 286 ~~~~~~~~C~~~i~~~-------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 331 (342)
T 2qzx_A 286 TSGKPFPKCEVRIRES-------EDNILGDNFLRSAYVVYNLDDKKISMAPVK 331 (342)
T ss_dssp TTSCBCSSEEESEEEC-------SSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred cCCCCCCccEEEEecC-------CCcEeChHhhhcEEEEEECCCCEEEEEeeC
Confidence 12246799988753 259999999999999999999999999975
No 23
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=4.4e-57 Score=459.48 Aligned_cols=309 Identities=29% Similarity=0.447 Sum_probs=270.3
Q ss_pred eeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCC--CCCC------CcccCCCCcccCCCCCceeecCeEEE
Q 010233 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPST--NCYF------SVACYFHSKYKSSQSSTYKKNGESAS 149 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~--~C~~------~~~C~~~~~f~~~~SsT~~~~~~~~~ 149 (514)
..+||.|. +..|+++|.||||||++.|++||||+++||++. .|.. ...|..++.|+|++|+||+..++.|.
T Consensus 3 ~~~~l~~~-~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~ 81 (334)
T 1j71_A 3 VPTTLINE-GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFS 81 (334)
T ss_dssp EEEEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEE
T ss_pred eeEEEecC-CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceE
Confidence 46789886 789999999999999999999999999999876 6752 23788889999999999999999999
Q ss_pred EEecCCe-EEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc--CCCcchHHHHHHcCCCCCC
Q 010233 150 IQYGTGA-IAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV--GNAVPVWYNMVKQGLIQDP 226 (514)
Q Consensus 150 ~~Yg~G~-~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~l~~L~~qg~i~~~ 226 (514)
+.|++|+ +.|.+++|+|++|+..++++.||++.... ..+||||||++..+. ...++++.+|++||.|+++
T Consensus 82 i~Yg~Gs~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~ 154 (334)
T 1j71_A 82 IEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTS-------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKN 154 (334)
T ss_dssp EEBTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSS
T ss_pred EEECCCCEEEEEEEEEEEEECCEEEccEEEEEEEecC-------CCccEEEEcCCcccCccccCCcHHHHHHHCCCCCcc
Confidence 9999997 68999999999999999999999998653 458999999987754 2455789999999999999
Q ss_pred eEEEEecCCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 227 VFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 227 ~FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
+||+||.+.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+. .+..++|||||+++++|++
T Consensus 155 ~Fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~---~~~~~iiDSGTt~~~lP~~ 229 (334)
T 1j71_A 155 AYSLYLNSED--ASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVS---TNADVVLDSGTTITYFSQS 229 (334)
T ss_dssp EEEEECCCTT--CSEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEE---EEEEEEECTTCSSEEECHH
T ss_pred EEEEEeCCCC--CCCeEEEEeeechHHccCceEEEEccCCCeEEEEEeEEEECCEecc---CCccEEEeCCCCcEecCHH
Confidence 9999998752 2389999999999999999999999988899999999999998774 2467999999999999999
Q ss_pred HHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccc
Q 010233 307 VITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNA 386 (514)
Q Consensus 307 ~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
++++|.+++++..
T Consensus 230 ~~~~l~~~~~~~~------------------------------------------------------------------- 242 (334)
T 1j71_A 230 TADKFARIVGATW------------------------------------------------------------------- 242 (334)
T ss_dssp HHHHHHHHHTCEE-------------------------------------------------------------------
T ss_pred HHHHHHHHcCCcc-------------------------------------------------------------------
Confidence 9999999997650
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCcee-eeCCCCCCCCeEEEEE-CCEEEEeCcccceEeecC
Q 010233 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESA-VDCGKLSSMPIVSFTI-GGKVFDLSPEEYILKVGE 464 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~-~~C~~~~~~P~l~f~f-~g~~~~l~~~~y~~~~~~ 464 (514)
+...+.|. ++|+ .+|.|+|+| +|++++|++++|+++..+
T Consensus 243 ------------------------------------~~~~~~~~~~~C~---~~p~i~f~f~~g~~~~i~~~~y~~~~~~ 283 (334)
T 1j71_A 243 ------------------------------------DSRNEIYRLPSCD---LSGDAVFNFDQGVKITVPLSELILKDSD 283 (334)
T ss_dssp ------------------------------------ETTTTEEECSSSC---CCSEEEEEESTTCEEEEEGGGGEEECSS
T ss_pred ------------------------------------cCCCceEEEEcCC---CCCceEEEEcCCcEEEECHHHheeecCC
Confidence 01234677 8998 489999999 799999999999998543
Q ss_pred CCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 465 GPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 465 ~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+ ..|+..|+.. +.||||++|||++|+|||++++|||||+++
T Consensus 284 ~--~~C~~~i~~~-------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (334)
T 1j71_A 284 S--SICYFGISRN-------DANILGDNFLRRAYIVYDLDDKTISLAQVK 324 (334)
T ss_dssp S--SCEEESEEEC-------TTCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred C--CeeEEEEeEC-------CCcEEChHhhccEEEEEECCCCEEEEEecC
Confidence 3 3599988753 359999999999999999999999999975
No 24
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=7.6e-57 Score=459.31 Aligned_cols=315 Identities=28% Similarity=0.441 Sum_probs=269.0
Q ss_pred eeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCC--CC------CCcccCCCCcccCCCCCceeecCeEEE
Q 010233 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN--CY------FSVACYFHSKYKSSQSSTYKKNGESAS 149 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~--C~------~~~~C~~~~~f~~~~SsT~~~~~~~~~ 149 (514)
..+||.+. +.+|+++|.||||||++.|++||||+++||++.. |. ....|..++.|+|++|+||+..++.|.
T Consensus 3 v~~~l~~~-~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~ 81 (342)
T 3pvk_A 3 VPVTLHNE-QVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFK 81 (342)
T ss_dssp EEEEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEE
T ss_pred cceEEecC-CcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEE
Confidence 46788775 7899999999999999999999999999998764 63 235798899999999999999999999
Q ss_pred EEecCCe-EEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccC-CCcchHHHHHHcCCCCCCe
Q 010233 150 IQYGTGA-IAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVG-NAVPVWYNMVKQGLIQDPV 227 (514)
Q Consensus 150 ~~Yg~G~-~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~-~~~~~l~~L~~qg~i~~~~ 227 (514)
+.|++|+ +.|.+++|+|+||+..++++.||++.... ..+||||||++..+.. ..++++.+|++||.|++++
T Consensus 82 i~Yg~gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~ 154 (342)
T 3pvk_A 82 IGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNA 154 (342)
T ss_dssp EECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSE
T ss_pred EEecCCCeEEEEEEEEEEEECCEEecceEEEEEEccC-------CCccEEEecCccccccccCCcHHHHHHhcCCCCCce
Confidence 9999998 89999999999999999999999998653 4589999999886543 3467899999999999999
Q ss_pred EEEEecCCCCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHH
Q 010233 228 FSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTV 307 (514)
Q Consensus 228 FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~ 307 (514)
||+||.+.. ...|.|+|||+|+++|.|++.|+|+....+|.|.+++|.++++.+.. .+..++|||||+++++|+++
T Consensus 155 fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~--~~~~~iiDSGtt~~~lP~~~ 230 (342)
T 3pvk_A 155 YSLYLNSPD--AATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--DNVDVLLDSGTTITYLQQDL 230 (342)
T ss_dssp EEEECCCTT--CSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEE--EEEEEEECTTCSSEEECHHH
T ss_pred EEEEeCCCC--CCCcEEEECccCccceeeeeEEeecCccceEEEEEeEEEECCEEecC--CCceEEEeCCCCCeecCHHH
Confidence 999998753 23799999999999999999999999888999999999999988743 34789999999999999999
Q ss_pred HHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCcccccc
Q 010233 308 ITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAM 387 (514)
Q Consensus 308 ~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (514)
+++|.+++++...
T Consensus 231 ~~~i~~~~~~~~~------------------------------------------------------------------- 243 (342)
T 3pvk_A 231 ADQIIKAFNGKLT------------------------------------------------------------------- 243 (342)
T ss_dssp HHHHHHHTTCEEE-------------------------------------------------------------------
T ss_pred HHHHHHHcCCeec-------------------------------------------------------------------
Confidence 9999999976510
Q ss_pred chhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEEC-CEEEEeCcccceEeecCCC
Q 010233 388 CSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIG-GKVFDLSPEEYILKVGEGP 466 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~-g~~~~l~~~~y~~~~~~~~ 466 (514)
......+.|.++|+ ..|+|+|+|+ |.+++||+++|+++.....
T Consensus 244 ---------------------------------~~~~~~~~~~~~C~---~~p~i~f~f~~g~~~~vp~~~~~~~~~~~~ 287 (342)
T 3pvk_A 244 ---------------------------------QDSNGNSFYEVDCN---LSGDVVFNFSKNAKISVPASEFAASLQGDD 287 (342)
T ss_dssp ---------------------------------ECTTSCEEEEECSC---CCSEEEEEESTTCEEEEEGGGGEEC-----
T ss_pred ---------------------------------ccCCCceEEEEecC---CCCceEEEECCCCEEEEcHHHheeeccccC
Confidence 00011235899999 4599999997 8999999999998743211
Q ss_pred ---cceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 467 ---EAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 467 ---~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
...|+..|+. .+.||||++|||++|++||++++|||||+++
T Consensus 288 g~~~~~C~~~i~~-------~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 331 (342)
T 3pvk_A 288 GQPYDKCQLLFDV-------NDANILGDNFLRSAYIVYDLDDNEISLAQVK 331 (342)
T ss_dssp -----CEEESEEE-------CTTCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCcCCeeEEEEee-------CCCeEeCHHHHhcEEEEEECCCCEEEEEecC
Confidence 2679998875 2478999999999999999999999999985
No 25
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=2.6e-57 Score=458.97 Aligned_cols=311 Identities=28% Similarity=0.443 Sum_probs=266.4
Q ss_pred eEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe-E
Q 010233 79 IVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA-I 157 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~-~ 157 (514)
..|+. .+..|+++|+|| ||++.|++||||+++||+|..|. ...|..++.|+|++|+ ++..++.|.+.|++|+ +
T Consensus 8 ~~~~~--~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~-~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~ 81 (323)
T 1bxo_A 8 NTPTA--NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELP-ASQQSGHSVYNPSATG-KELSGYTWSISYGDGSSA 81 (323)
T ss_dssp EEECG--GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCBCHHHHC-EEEEEEEEEEECTTSCEE
T ss_pred eeecC--CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC-chhccCCCCCCcccCC-cccCCCeEEEEeCCCCeE
Confidence 34443 478999999999 89999999999999999999996 2356788999999999 8778899999999998 8
Q ss_pred EEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc---CCCcchHHHHHHcCCCCCCeEEEEecC
Q 010233 158 AGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV---GNAVPVWYNMVKQGLIQDPVFSFWLNR 234 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~---~~~~~~l~~L~~qg~i~~~~FSl~l~~ 234 (514)
.|.+++|+|++|+..++++.||+++...+..+.....+||||||++..+. ...++++++|+++ |.+++||+||.+
T Consensus 82 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~ 159 (323)
T 1bxo_A 82 SGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS--LAQPLFAVALKH 159 (323)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG--BSSSEEEEECCS
T ss_pred EEEEEEEEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHh--cCCcEEEEEEeC
Confidence 99999999999999999999999998654322235679999999998775 2467899999987 899999999987
Q ss_pred CCCCCCCceEEECCCCCCCcccceeEEecc-cccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHH
Q 010233 235 NQQEDEGGEIVFGGVDPNHYKGKHTYVPVT-QKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINH 313 (514)
Q Consensus 235 ~~~~~~~G~L~fGg~D~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~ 313 (514)
. ..|+|+|||+|+++|.|++.|+|+. +.++|.|.+++|+|++ + +.....++|||||+++++|++++++|.+
T Consensus 160 ~----~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~--~--~~~~~~aiiDSGTs~~~lP~~~~~~l~~ 231 (323)
T 1bxo_A 160 Q----QPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS--Q--SGDGFSGIADTGTTLLLLDDSVVSQYYS 231 (323)
T ss_dssp S----SCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT--E--EEEEEEEEECTTCSSEEECHHHHHHHHT
T ss_pred C----CCceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC--c--cCCCceEEEeCCCCceeCCHHHHHHHHH
Confidence 4 2799999999999999999999996 6789999999999999 2 3456789999999999999999999998
Q ss_pred HhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHH
Q 010233 314 AIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEM 393 (514)
Q Consensus 314 ~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++.+..
T Consensus 232 ~i~~a~-------------------------------------------------------------------------- 237 (323)
T 1bxo_A 232 QVSGAQ-------------------------------------------------------------------------- 237 (323)
T ss_dssp TSTTCE--------------------------------------------------------------------------
T ss_pred hCCCce--------------------------------------------------------------------------
Confidence 884330
Q ss_pred HHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEc
Q 010233 394 AVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISG 473 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~ 473 (514)
.+...|.|.++|+ ..+|+|+|+|+|++++||+++|+++... ....|+..
T Consensus 238 ----------------------------~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~l~~~~~~~~~~~-~~~~C~~~ 286 (323)
T 1bxo_A 238 ----------------------------QDSNAGGYVFDCS--TNLPDFSVSISGYTATVPGSLINYGPSG-DGSTCLGG 286 (323)
T ss_dssp ----------------------------EETTTTEEEECTT--CCCCCEEEEETTEEEEECHHHHEEEECS-SSSCEEES
T ss_pred ----------------------------EcCcCCEEEEECC--CCCceEEEEECCEEEEECHHHeEEeccC-CCCeEEEE
Confidence 0123467899999 5899999999999999999999987532 23689998
Q ss_pred eEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 474 FTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 474 i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
|+..+ ..+.||||++|||++|+|||++++|||||++|
T Consensus 287 i~~~~----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 287 IQSNS----GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp EEECT----TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EECCC----CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 88642 34689999999999999999999999999986
No 26
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=6e-56 Score=452.29 Aligned_cols=312 Identities=27% Similarity=0.492 Sum_probs=265.7
Q ss_pred eeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeE
Q 010233 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAI 157 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~ 157 (514)
..+||.|+ +..|+++|.||||||++.|+|||||+++||+|. +.|+|++|+++ .++.|.+.|++|++
T Consensus 3 ~~~~l~n~-~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-----------~~y~~s~Ss~~--~~~~~~i~Yg~Gs~ 68 (340)
T 1wkr_A 3 GSVPATNQ-LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-----------KSYVKTSTSSA--TSDKVSVTYGSGSF 68 (340)
T ss_dssp EEEEEEEC-SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS-----------SCCCCCTTCEE--EEEEEEEECSSCEE
T ss_pred ccEeeecc-CcEEEEEEEECCCCcEEEEEEeCCChhheecCC-----------CccCCcCCccc--cCceEEEEECCcEE
Confidence 46899997 679999999999999999999999999999752 56899888754 57899999999999
Q ss_pred EEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeecccccccc--------CCCcchHHHHHHcCCCCCCeEE
Q 010233 158 AGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISV--------GNAVPVWYNMVKQGLIQDPVFS 229 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--------~~~~~~l~~L~~qg~i~~~~FS 229 (514)
.|.+++|+|+||+.+++++.||++....+ + ..++||||||++..+. ...++++++|++||+|++++||
T Consensus 69 ~G~~~~Dtv~~g~~~v~~~~fg~~~~~~~--~--~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS 144 (340)
T 1wkr_A 69 SGTEYTDTVTLGSLTIPKQSIGVASRDSG--F--DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLA 144 (340)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEES--C--TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEE
T ss_pred EEEEEEEEEEECCEEEcceEEEEEEccCC--C--cCCCcEEECCccccccccccccccccCCCHHHHHHHcCCCCCCEEE
Confidence 99999999999999999999999998644 2 2579999999998775 3457899999999999999999
Q ss_pred EEecCCC-CCCCCceEEECCCCCCCcccceeEEeccc----ccceEEEEceEEECC-eeccccCCCceEEEcCCCCCccc
Q 010233 230 FWLNRNQ-QEDEGGEIVFGGVDPNHYKGKHTYVPVTQ----KGYWQFNMGDVLIGG-KPTGYCAGGCSAIADSGTSLLAG 303 (514)
Q Consensus 230 l~l~~~~-~~~~~G~L~fGg~D~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g-~~~~~~~~~~~aiiDSGtt~i~l 303 (514)
+||.+.. +....|.|+|||+|+++|.|++.|+|+.. ..+|.|. .+|.|++ +.+. .+..++|||||+++++
T Consensus 145 ~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~---~~~~aiiDSGTt~~~l 220 (340)
T 1wkr_A 145 VSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSIL---SSTAGIVDTGTTLTLI 220 (340)
T ss_dssp EECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEE---EEEEEEECTTBCSEEE
T ss_pred EEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEcc---CCCeEEEeCCcccccC
Confidence 9998642 12247999999999999999999999976 7899999 9999998 6653 2468999999999999
Q ss_pred CHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCcc
Q 010233 304 PTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVL 383 (514)
Q Consensus 304 P~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (514)
|++++++|.+++++..
T Consensus 221 P~~~~~~l~~~~~a~~---------------------------------------------------------------- 236 (340)
T 1wkr_A 221 ASDAFAKYKKATGAVA---------------------------------------------------------------- 236 (340)
T ss_dssp CHHHHHHHHHHHTCEE----------------------------------------------------------------
T ss_pred CHHHHHHHHHhhCCEE----------------------------------------------------------------
Confidence 9999999988886540
Q ss_pred ccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeec
Q 010233 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVG 463 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~ 463 (514)
....|.|.+||+....+|+|+|+|+|++++|+|++|+++..
T Consensus 237 ---------------------------------------~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~~yi~~~~ 277 (340)
T 1wkr_A 237 ---------------------------------------DNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRN 277 (340)
T ss_dssp ---------------------------------------CTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGG
T ss_pred ---------------------------------------cCCCCeEEeeccccccCCcEEEEECCEEEEEcHHHhccccc
Confidence 12346789999877789999999999999999999998653
Q ss_pred C-----CCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 464 E-----GPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 464 ~-----~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
. +....|++.|..++.....+..||||++|||++|+|||++++|||||+++
T Consensus 278 ~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 333 (340)
T 1wkr_A 278 LNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTS 333 (340)
T ss_dssp GGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECT
T ss_pred cccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecC
Confidence 2 12357998888765433345679999999999999999999999999975
No 27
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=4.5e-55 Score=462.57 Aligned_cols=324 Identities=26% Similarity=0.446 Sum_probs=262.9
Q ss_pred eceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEE
Q 010233 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~ 160 (514)
+|.+..+..|+++|+||||||+++|+|||||+++||+|..| |..++.|+|++|+||+..++.|.+.|++|++.|.
T Consensus 67 ~l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c-----c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~ 141 (455)
T 3lpj_A 67 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH-----PFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGE 141 (455)
T ss_dssp CEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC-----TTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred cccCCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc-----cccCCcccCCCCCCcccCCccEEEEeCCeEEEEE
Confidence 45555678999999999999999999999999999999887 6678899999999999999999999999999999
Q ss_pred EEEEEEEEee-eeec-CceEEEEEecCCccccccccceeeeccccccccC--CCcchHHHHHHcCCCCCCeEEEEecCCC
Q 010233 161 FSYDSVKVGD-LVVK-DQEFIEATREPGVTFMVAKFDGILGLGFQEISVG--NAVPVWYNMVKQGLIQDPVFSFWLNRNQ 236 (514)
Q Consensus 161 ~~~D~v~ig~-~~i~-~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~--~~~~~l~~L~~qg~i~~~~FSl~l~~~~ 236 (514)
+++|+|+|++ ..+. .+.|+++............++||||||++..+.. ..++++++|++|+.|+ ++||+||.+..
T Consensus 142 ~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~L~~~~ 220 (455)
T 3lpj_A 142 LGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAG 220 (455)
T ss_dssp EEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCS
T ss_pred EEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCCC-ceeEEEecccc
Confidence 9999999984 2222 3567777665442222356799999999988754 3788999999999997 99999997631
Q ss_pred C--------CCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccC---CCceEEEcCCCCCcccCH
Q 010233 237 Q--------EDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCA---GGCSAIADSGTSLLAGPT 305 (514)
Q Consensus 237 ~--------~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~---~~~~aiiDSGtt~i~lP~ 305 (514)
. ....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+.+.. ....++|||||+++++|.
T Consensus 221 ~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~ 300 (455)
T 3lpj_A 221 FPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPK 300 (455)
T ss_dssp SCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTSSSEEEEH
T ss_pred ccccccccccCCCceEEECCcCcccccCceEEEecCCCceeEEEEeEEEECCEEccccccccCCCeEEEECCCcceeCCH
Confidence 0 23479999999999999999999999999999999999999999876432 256899999999999999
Q ss_pred HHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCcccc
Q 010233 306 TVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNN 385 (514)
Q Consensus 306 ~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (514)
+++++|.+++++....
T Consensus 301 ~~~~~i~~~i~~~~~~---------------------------------------------------------------- 316 (455)
T 3lpj_A 301 KVFEAAVKSIKAASST---------------------------------------------------------------- 316 (455)
T ss_dssp HHHHHHHHHHHHHTTT----------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhccc----------------------------------------------------------------
Confidence 9999999999765100
Q ss_pred ccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCC-CCceeeeCCCCCC-----CCeEEEEECCE------EEEe
Q 010233 386 AMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSP-MGESAVDCGKLSS-----MPIVSFTIGGK------VFDL 453 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~g~~~~~C~~~~~-----~P~l~f~f~g~------~~~l 453 (514)
...+.. ...+.++|..... +|+|+|+|+|. +++|
T Consensus 317 ----------------------------------~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l 362 (455)
T 3lpj_A 317 ----------------------------------EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITI 362 (455)
T ss_dssp ----------------------------------SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEE
T ss_pred ----------------------------------cccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCceEEEEE
Confidence 000000 0123577776554 89999999775 5999
Q ss_pred CcccceEeecCCC--cceEEE-ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 454 SPEEYILKVGEGP--EAQCIS-GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 454 ~~~~y~~~~~~~~--~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+|++|+++..+.. ...|+. .+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 363 ~~~~yi~~~~~~~~~~~~C~~f~~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 420 (455)
T 3lpj_A 363 LPQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 420 (455)
T ss_dssp CHHHHEEEECCTTCCSCEEEEECEEE------ESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred CHHHheEeccCCCCCCceEEEEeccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence 9999999865432 257996 2321 23579999999999999999999999999974
No 28
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.7e-54 Score=446.12 Aligned_cols=322 Identities=28% Similarity=0.456 Sum_probs=259.3
Q ss_pred eceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEE
Q 010233 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~ 160 (514)
+|++..+..|+++|+||||||++.|+|||||+++||+|..|. .| ++.|+|++|+||+..++.|.+.|++|++.|.
T Consensus 6 ~l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~---~~--~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~ 80 (383)
T 2ewy_A 6 NLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS---YI--DTYFDTERSSTYRSKGFDVTVKYTQGSWTGF 80 (383)
T ss_dssp CEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT---TB--SCCCCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred eccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCC---cc--ccCcccccCccceeCCceEEEEECCcEEEEE
Confidence 677777889999999999999999999999999999998884 34 5789999999999999999999999999999
Q ss_pred EEEEEEEEeeeeec--CceEEEEEecCCccccccccceeeecccccccc--CCCcchHHHHHHcCCCCCCeEEEEecCC-
Q 010233 161 FSYDSVKVGDLVVK--DQEFIEATREPGVTFMVAKFDGILGLGFQEISV--GNAVPVWYNMVKQGLIQDPVFSFWLNRN- 235 (514)
Q Consensus 161 ~~~D~v~ig~~~i~--~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~--~~~~~~l~~L~~qg~i~~~~FSl~l~~~- 235 (514)
+++|+|+|++.... .+.|++.....+.......++||||||++.++. ....+++++|++|+.| +++||+||++.
T Consensus 81 ~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i-~~~FS~~l~~~~ 159 (383)
T 2ewy_A 81 VGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAG 159 (383)
T ss_dssp EEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTC-CSCEEEEECCC-
T ss_pred EEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCC-CcceEEEeeccc
Confidence 99999999853222 245777654433211234679999999998875 4577899999999999 79999999752
Q ss_pred ----CCCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCC---CceEEEcCCCCCcccCHHHH
Q 010233 236 ----QQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAG---GCSAIADSGTSLLAGPTTVI 308 (514)
Q Consensus 236 ----~~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~---~~~aiiDSGtt~i~lP~~~~ 308 (514)
......|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|+++.+.+... ...++|||||+++++|++++
T Consensus 160 ~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~ 239 (383)
T 2ewy_A 160 LPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVF 239 (383)
T ss_dssp --------CCEEEEETSCCGGGCCSCEEEEECSSBTTBBCCEEEEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHH
T ss_pred cccccCCCCCeEEEeCccchhhccCccEEEecCCCceEEEEEEEEEECCEEccccccccCCccEEEEcCCccccCCHHHH
Confidence 12234899999999999999999999999889999999999999988754322 46899999999999999999
Q ss_pred HHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccc
Q 010233 309 TMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMC 388 (514)
Q Consensus 309 ~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (514)
++|.+++++.....
T Consensus 240 ~~l~~~i~~~~~~~------------------------------------------------------------------ 253 (383)
T 2ewy_A 240 DAVVEAVARASLIP------------------------------------------------------------------ 253 (383)
T ss_dssp HHHHHHHHHTTCSS------------------------------------------------------------------
T ss_pred HHHHHHHhhhcccc------------------------------------------------------------------
Confidence 99999997651000
Q ss_pred hhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCC---CceeeeCCCC-----CCCCeEEEEECC------EEEEeC
Q 010233 389 SACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPM---GESAVDCGKL-----SSMPIVSFTIGG------KVFDLS 454 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~---g~~~~~C~~~-----~~~P~l~f~f~g------~~~~l~ 454 (514)
.... ..+.++|... ..+|+|+|+|+| .+++|+
T Consensus 254 ----------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~ 299 (383)
T 2ewy_A 254 ----------------------------------EFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITIL 299 (383)
T ss_dssp ----------------------------------CCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEEEEC
T ss_pred ----------------------------------cCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEEEEC
Confidence 0000 1235677644 258999999976 389999
Q ss_pred cccceEeecC-CCcceEEE-ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 455 PEEYILKVGE-GPEAQCIS-GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 455 ~~~y~~~~~~-~~~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
|++|+.+..+ .....|+. .+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 300 ~~~yi~~~~~~~~~~~C~~~~i~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 355 (383)
T 2ewy_A 300 PQLYIQPMMGAGLNYECYRFGISP------STNALVIGATVMEGFYVIFDRAQKRVGFAASP 355 (383)
T ss_dssp HHHHEEEECCCTTCSEEEEESEEE------ESSCEEECHHHHTTEEEEEETTTTEEEEEECT
T ss_pred hHHheeecccCCCCceeEEEEecC------CCCcEEEChHHhCCeeEEEECCCCeEEEEecc
Confidence 9999987642 22467985 4542 13479999999999999999999999999974
No 29
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=9.3e-54 Score=445.89 Aligned_cols=323 Identities=26% Similarity=0.446 Sum_probs=259.1
Q ss_pred ceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEEE
Q 010233 82 LKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFF 161 (514)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~~ 161 (514)
|....+..|+++|+||||||+++|+|||||+++||+|..| |..++.|+|++|+||+..++.|.+.|++|++.|.+
T Consensus 22 l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c-----~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~ 96 (402)
T 3vf3_A 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH-----PFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGEL 96 (402)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC-----TTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEE
T ss_pred ccCCCCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC-----CcccCCcCcccCcccccCCCEEEEEECcEEEEEEE
Confidence 3444467899999999999999999999999999999887 56688999999999999999999999999999999
Q ss_pred EEEEEEEe-eeeecC-ceEEEEEecCCccccccccceeeeccccccccCC--CcchHHHHHHcCCCCCCeEEEEecCCC-
Q 010233 162 SYDSVKVG-DLVVKD-QEFIEATREPGVTFMVAKFDGILGLGFQEISVGN--AVPVWYNMVKQGLIQDPVFSFWLNRNQ- 236 (514)
Q Consensus 162 ~~D~v~ig-~~~i~~-~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~--~~~~l~~L~~qg~i~~~~FSl~l~~~~- 236 (514)
++|+|+|+ +..+.. +.|+++............++||||||++..+... .++++++|++|+.|+ ++||+||.+..
T Consensus 97 ~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~l~~~~~ 175 (402)
T 3vf3_A 97 GTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGF 175 (402)
T ss_dssp EEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCC-
T ss_pred EEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCCc-cceEEEeecccc
Confidence 99999998 444443 3467666544322224567999999999887643 788999999999997 99999997531
Q ss_pred ----C---CCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccC---CCceEEEcCCCCCcccCHH
Q 010233 237 ----Q---EDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCA---GGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 237 ----~---~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~---~~~~aiiDSGtt~i~lP~~ 306 (514)
. ....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|+++.+.+.. ....++|||||+++++|.+
T Consensus 176 ~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~ 255 (402)
T 3vf3_A 176 PLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKK 255 (402)
T ss_dssp ------------EEEEESSCCGGGEEEEEEEEECSSBTTBEECEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHH
T ss_pred cccccccccCCCCEEEeCCcCcccccCceEEEeCCcCcEEEEEEeEEEECCEEecccccccCCCeEEEECCCCcccCCHH
Confidence 0 23479999999999999999999999999999999999999999876432 2568999999999999999
Q ss_pred HHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccc
Q 010233 307 VITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNA 386 (514)
Q Consensus 307 ~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
++++|.+++++....
T Consensus 256 ~~~~i~~~i~~~~~~----------------------------------------------------------------- 270 (402)
T 3vf3_A 256 VFEAAVKSIKAASST----------------------------------------------------------------- 270 (402)
T ss_dssp HHHHHHHHHHHHTTT-----------------------------------------------------------------
T ss_pred HHHHHHHHHhhhccc-----------------------------------------------------------------
Confidence 999999999665100
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCC-CCceeeeCCCCC-----CCCeEEEEECCE------EEEeC
Q 010233 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSP-MGESAVDCGKLS-----SMPIVSFTIGGK------VFDLS 454 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~g~~~~~C~~~~-----~~P~l~f~f~g~------~~~l~ 454 (514)
...+.. ...+.++|.... .+|+|+|+|+|. +++|+
T Consensus 271 ---------------------------------~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~ 317 (402)
T 3vf3_A 271 ---------------------------------EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITIL 317 (402)
T ss_dssp ---------------------------------SCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEEEEEC
T ss_pred ---------------------------------cccCccccccccccccccccchHhhCCceEEEEecCCCCceEEEEEC
Confidence 000000 112357887554 689999999764 59999
Q ss_pred cccceEeecCCC--cceEEE-ceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 455 PEEYILKVGEGP--EAQCIS-GFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 455 ~~~y~~~~~~~~--~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
|++|+++..... ...|+. .+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 318 ~~~yi~~~~~~~~~~~~C~~~~~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 374 (402)
T 3vf3_A 318 PQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 374 (402)
T ss_dssp HHHHEEECCCGGGTTEEEEEECEEE------ESSCEEECHHHHTTEEEEEEGGGTEEEEEEET
T ss_pred HHHheehhccCCCCCceEEEEeccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence 999999865432 247995 3332 23579999999999999999999999999974
No 30
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.3e-53 Score=443.69 Aligned_cols=324 Identities=26% Similarity=0.433 Sum_probs=258.8
Q ss_pred eceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCeEEEE
Q 010233 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGF 160 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~~~G~ 160 (514)
+|.+..+..|+++|+||||+|++.|+|||||+++||+|..|. .| ++.|+|++|+||+..++.|.+.|++|++.|.
T Consensus 14 ~l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~---~~--~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~ 88 (395)
T 2qp8_A 14 NLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP---FL--HRYYQRQLSSTYRDLRKGVYVPYTQGKWEGE 88 (395)
T ss_dssp CEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT---TC--SCCCCGGGCTTCEEEEEEEEEECSSCEEEEE
T ss_pred ecCCCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCc---cc--cCCcCcccCCCceeCCceEEEEECCcEEEEE
Confidence 566666889999999999999999999999999999999884 33 6889999999999999999999999999999
Q ss_pred EEEEEEEEe-eeeec-CceEEEEEecCCcccc-ccccceeeeccccccccC--CCcchHHHHHHcCCCCCCeEEEEecCC
Q 010233 161 FSYDSVKVG-DLVVK-DQEFIEATREPGVTFM-VAKFDGILGLGFQEISVG--NAVPVWYNMVKQGLIQDPVFSFWLNRN 235 (514)
Q Consensus 161 ~~~D~v~ig-~~~i~-~~~fg~~~~~~~~~~~-~~~~~GIlGLg~~~~s~~--~~~~~l~~L~~qg~i~~~~FSl~l~~~ 235 (514)
+++|+|+++ +..+. .+.|++...... .|. ....+||||||++.++.. ...+++++|++|+.|+ ++||+||.+.
T Consensus 89 ~~~Dtv~ig~g~~~~~~~~~~~~~~~~~-~f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i~-~~FS~~L~~~ 166 (395)
T 2qp8_A 89 LGTDLVSIPHGPNVTVRANIAAITESDK-FFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGA 166 (395)
T ss_dssp EEEEEEECTTSCSCEEEEEEEEEEEEES-CSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCC
T ss_pred EEeEEEEECCCCCceEEEEEEEEEccCc-ccccccCccceEEcCchhhccCCCCCCCHHHHHHHccCCc-ceEEEEeccc
Confidence 999999998 55443 255676654433 222 346799999999987753 5678999999999997 8999999863
Q ss_pred C--------CCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccC---CCceEEEcCCCCCcccC
Q 010233 236 Q--------QEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCA---GGCSAIADSGTSLLAGP 304 (514)
Q Consensus 236 ~--------~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~---~~~~aiiDSGtt~i~lP 304 (514)
. .....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|+|+++.+.+.. ....++|||||+++++|
T Consensus 167 ~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP 246 (395)
T 2qp8_A 167 GFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP 246 (395)
T ss_dssp SSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEE
T ss_pred cccccccccccCCCcEEEECCcCcccccCceEEeccCCCceEEEEEEEEEECCEEcccCccccCCceEEEEcCCCcEecC
Confidence 1 012479999999999999999999999988999999999999998875432 24679999999999999
Q ss_pred HHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccc
Q 010233 305 TTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLN 384 (514)
Q Consensus 305 ~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (514)
++++++|.+++++..... ++
T Consensus 247 ~~~~~~l~~~i~~~~~~~--------~~---------------------------------------------------- 266 (395)
T 2qp8_A 247 KKVFEAAVKSIKAASSTE--------KF---------------------------------------------------- 266 (395)
T ss_dssp HHHHHHHHHHHHHHTTTS--------CC----------------------------------------------------
T ss_pred HHHHHHHHHHHhhhcccc--------cC----------------------------------------------------
Confidence 999999999986541000 00
Q ss_pred cccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCC-----CCCeEEEEECCE------EEEe
Q 010233 385 NAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLS-----SMPIVSFTIGGK------VFDL 453 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~-----~~P~l~f~f~g~------~~~l 453 (514)
. ..++ ..+.++|.... .+|+|+|+|+|. +++|
T Consensus 267 ----------------------~----~~~~-----------~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l 309 (395)
T 2qp8_A 267 ----------------------P----DGFW-----------LGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITI 309 (395)
T ss_dssp ----------------------C----HHHH-----------TTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEEE
T ss_pred ----------------------C----cccc-----------ccccccccccccchHhhCCcEEEEEccCCCCceEEEEE
Confidence 0 0000 11245665443 589999999764 7999
Q ss_pred CcccceEeecC--CCcceEE-EceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 454 SPEEYILKVGE--GPEAQCI-SGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 454 ~~~~y~~~~~~--~~~~~C~-~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+|++|+++..+ .....|+ .++... ++.||||++|||++|+|||++++|||||+++
T Consensus 310 ~p~~yi~~~~~~~~~~~~C~~~~i~~~------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 367 (395)
T 2qp8_A 310 LPQQYLRPVEDVATSQDDCYKFAISQS------STGTVMGAVIMEGFYVVFDRARKRIGFAVSA 367 (395)
T ss_dssp CHHHHEEEECCTTCCSCEEEEECEEEE------SSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred CHHHhEeecccCCCCCceEEEEEecCC------CCcEEEChHHhCCeeEEEECCCCEEEEEecc
Confidence 99999998653 2235897 456531 2579999999999999999999999999974
No 31
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=1.1e-52 Score=437.70 Aligned_cols=324 Identities=18% Similarity=0.245 Sum_probs=254.5
Q ss_pred ceeEece-eccCceEEEEEEecCCCCeeEEEecCCCCceeEeCC-----------CCCCCcccCCCCcc------cCCCC
Q 010233 77 TDIVALK-NYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPST-----------NCYFSVACYFHSKY------KSSQS 138 (514)
Q Consensus 77 ~~~~~l~-n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~-----------~C~~~~~C~~~~~f------~~~~S 138 (514)
...+||. |+.+.+|+++|.||||||++.|+|||||+++||+|. .|. +..|..+..| ++.+|
T Consensus 9 ~~~~pl~~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~-s~~C~~~~~~~c~~c~~~~~s 87 (403)
T 3aup_A 9 LVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCH-STQCSRANTHQCLSCPAASRP 87 (403)
T ss_dssp CEEEEEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTT-BHHHHHTTCCCEEECSSSCBT
T ss_pred cEEEeeecCCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCC-CccccCccccCccccCCCCCC
Confidence 4568999 778999999999999999999999999999999999 553 3457767777 55554
Q ss_pred CceeecCeEEEEEec-CCe-EEEEEEEEEEEEee-----------eeecCceEEEEEecCCccccccccceeeecccccc
Q 010233 139 STYKKNGESASIQYG-TGA-IAGFFSYDSVKVGD-----------LVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEI 205 (514)
Q Consensus 139 sT~~~~~~~~~~~Yg-~G~-~~G~~~~D~v~ig~-----------~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~ 205 (514)
+ +....|.|.+.|+ +|+ +.|.+++|+|+|++ ..++++.|||+.......+....++||||||++.+
T Consensus 88 ~-~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~ 166 (403)
T 3aup_A 88 G-CHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPI 166 (403)
T ss_dssp T-BCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTT
T ss_pred C-CCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCc
Confidence 3 4556789999998 555 89999999999998 88999999999876432133457899999999876
Q ss_pred ccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCCCCCCc--c-c-----ceeEEecccc--cceEEEEce
Q 010233 206 SVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHY--K-G-----KHTYVPVTQK--GYWQFNMGD 275 (514)
Q Consensus 206 s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~--~-g-----~l~~~pv~~~--~~w~v~l~~ 275 (514)
+ +..+|. ++.+.+++||+||.+.. ...|.|+||| |+++| . | ++.|+|+... ++|.|.+++
T Consensus 167 s------~~~ql~-~~~~~~~~FS~~L~~~~--~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~~~~y~v~l~~ 236 (403)
T 3aup_A 167 S------LPNQLA-SHFGLQRQFTTCLSRYP--TSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNS 236 (403)
T ss_dssp S------HHHHHH-HHHTCCSEEEEECCSCT--TSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECTTSCEEECEEE
T ss_pred C------HHHHHH-hhcCCCCeEEEEcCCCC--CCCeeEEECC-CchhccccccccccCceeecccccCCCCcceEEEEE
Confidence 6 555664 55577899999998752 2389999999 99888 5 6 9999999765 899999999
Q ss_pred EEECCeec-cccCC--------CceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCc
Q 010233 276 VLIGGKPT-GYCAG--------GCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHP 346 (514)
Q Consensus 276 i~v~g~~~-~~~~~--------~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~ 346 (514)
|+|+++.+ .+... ...+||||||++++||++++++|.+++.+... .+ ...
T Consensus 237 i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~----------~~---------~~~-- 295 (403)
T 3aup_A 237 IRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLP----------KQ---------AQV-- 295 (403)
T ss_dssp EEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSC----------GG---------GEE--
T ss_pred EEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhc----------cc---------ccc--
Confidence 99999877 43221 23599999999999999999999999854300 00 000
Q ss_pred ccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCC
Q 010233 347 KKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPM 426 (514)
Q Consensus 347 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 426 (514)
-+...
T Consensus 296 ---------------------------------------------------------------------------~~~~~ 300 (403)
T 3aup_A 296 ---------------------------------------------------------------------------KSVAP 300 (403)
T ss_dssp ---------------------------------------------------------------------------CCCTT
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 00112
Q ss_pred CceeeeCCCCCCCCeEEEEECC---EEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeC
Q 010233 427 GESAVDCGKLSSMPIVSFTIGG---KVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDF 503 (514)
Q Consensus 427 g~~~~~C~~~~~~P~l~f~f~g---~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~ 503 (514)
..+-++|+.+..+|+|+|+|+| +.++|++++|+++... ...|+ +|+..+. ...+.||||+.|||++|+|||+
T Consensus 301 ~~~c~~c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvfD~ 375 (403)
T 3aup_A 301 FGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP--GVTCL-GVMNGGM--QPRAEITLGARQLEENLVVFDL 375 (403)
T ss_dssp CSCEECGGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC-----CEEE-CEEECCS--CCSSSEEECHHHHTTSCEEEET
T ss_pred CCceEECCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCC--CeEEE-EEEcCCC--CCCCcEEEChHHhcCeEEEEEC
Confidence 2366789877789999999976 5999999999997542 36899 7876542 1246899999999999999999
Q ss_pred CCCeEEE-EEc
Q 010233 504 GELRVGF-AEA 513 (514)
Q Consensus 504 ~~~riGf-a~~ 513 (514)
+++|||| |++
T Consensus 376 ~~~rIGf~A~~ 386 (403)
T 3aup_A 376 ARSRVGFSTSS 386 (403)
T ss_dssp TTTEEEEESSC
T ss_pred CCCEEEEeccc
Confidence 9999999 765
No 32
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=6.7e-52 Score=431.88 Aligned_cols=335 Identities=16% Similarity=0.201 Sum_probs=254.9
Q ss_pred CceeEeceec-cCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCC----------CcccCCCCcccCCC-----CC
Q 010233 76 DTDIVALKNY-MDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF----------SVACYFHSKYKSSQ-----SS 139 (514)
Q Consensus 76 ~~~~~~l~n~-~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~----------~~~C~~~~~f~~~~-----Ss 139 (514)
....+|++.. .+++|+++|+||||||++.|++||||+++||+|..|.. +..|..++.|++.. ++
T Consensus 7 ~~~~~pv~~d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~~~~ 86 (413)
T 3vla_A 7 SALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRP 86 (413)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSSCCCTTCEECBTTSHHHHHTTCCEEECCSSCCBT
T ss_pred ccEEEEeeecCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCCCCCCCcCccCCCcccccccccCCCcccccCCCC
Confidence 5667888854 47899999999999999999999999999999975521 34576677787642 34
Q ss_pred ceeecCeEEEEEec-CCe-EEEEEEEEEEEEe---------eeeecCceEEEEEecCCccccccccceeeeccccccccC
Q 010233 140 TYKKNGESASIQYG-TGA-IAGFFSYDSVKVG---------DLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVG 208 (514)
Q Consensus 140 T~~~~~~~~~~~Yg-~G~-~~G~~~~D~v~ig---------~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~ 208 (514)
++....|.|.+.|+ +|+ +.|.+++|+|+|+ ++.++++.|||+....... ....++||||||++.++
T Consensus 87 ~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g-~~~~~dGIlGLg~~~lS-- 163 (413)
T 3vla_A 87 GCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQN-LASGVVGMAGLGRTRIA-- 163 (413)
T ss_dssp TBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTT-SCTTCCEEEECSSSSSS--
T ss_pred CCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccC-cccccccccccCCCCcc--
Confidence 56666799999995 655 7899999999997 3678899999998753211 23568999999999877
Q ss_pred CCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCCCCC-----Ccccc-eeEEecccc--------------cc
Q 010233 209 NAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPN-----HYKGK-HTYVPVTQK--------------GY 268 (514)
Q Consensus 209 ~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~-----~~~g~-l~~~pv~~~--------------~~ 268 (514)
+..+|.+++.+ +++||+||.+.. ..+|.|+|||+|.. ++.|+ +.|+|+... .+
T Consensus 164 ----l~sql~~~~~i-~~~FS~cL~~~~--~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~ 236 (413)
T 3vla_A 164 ----LPSQFASAFSF-KRKFAMCLSGST--SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVE 236 (413)
T ss_dssp ----HHHHHHHHHTC-CSEEEEECCSCS--SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCS
T ss_pred ----hHHHHhhhcCC-CceEEEeCCCCC--CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCce
Confidence 77889999988 899999998842 24799999999875 37888 999999754 69
Q ss_pred eEEEEceEEECCeeccccC--------CCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHh
Q 010233 269 WQFNMGDVLIGGKPTGYCA--------GGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLL 340 (514)
Q Consensus 269 w~v~l~~i~v~g~~~~~~~--------~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~ 340 (514)
|.|.|++|+|+++.+.+.. +...+||||||++++||.++|++|.++|.+... ..++
T Consensus 237 y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~--------~~~~-------- 300 (413)
T 3vla_A 237 YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA--------ARNI-------- 300 (413)
T ss_dssp CEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHH--------HTTC--------
T ss_pred EEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhc--------ccCC--------
Confidence 9999999999999876432 357899999999999999999999999865400 0000
Q ss_pred hhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhcc
Q 010233 341 LFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCD 420 (514)
Q Consensus 341 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 420 (514)
...++ ......|+
T Consensus 301 -~~~~~------------------------------------------------------------------~~~~~~C~ 313 (413)
T 3vla_A 301 -TRVAS------------------------------------------------------------------VAPFGACF 313 (413)
T ss_dssp -CEECC------------------------------------------------------------------CTTCSCEE
T ss_pred -CcCCC------------------------------------------------------------------CCCCccee
Confidence 00000 00012333
Q ss_pred CCCCCCCceeeeCCCCCCCCeEEEEECC--EEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceE
Q 010233 421 RMPSPMGESAVDCGKLSSMPIVSFTIGG--KVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYH 498 (514)
Q Consensus 421 ~~~~~~g~~~~~C~~~~~~P~l~f~f~g--~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y 498 (514)
..+..... .....+|+|+|+|+| +.|+|++++|+++..+ +..|+ +|...+. ..++.||||+.|||++|
T Consensus 314 ~~~~~~~~-----~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~--~~~~~~IlGd~fl~~~~ 383 (413)
T 3vla_A 314 STDNILST-----RLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCL-GVVDGGS--NLRTSIVIGGHQLEDNL 383 (413)
T ss_dssp ECTTCCEE-----TTEECCCCEEEECSSTTCEEEECHHHHEEEEET--TEEEE-CEEEEES--SCSSSEEECHHHHTTEE
T ss_pred ccCCcccc-----ccccCCCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEE-EEEecCC--CcccceeEehhhhcCeE
Confidence 33211000 001278999999987 9999999999998654 36798 5765542 23468999999999999
Q ss_pred EEEeCCCCeEEEEEc
Q 010233 499 TVFDFGELRVGFAEA 513 (514)
Q Consensus 499 ~vfD~~~~riGfa~~ 513 (514)
+|||++++|||||++
T Consensus 384 vvfD~~~~riGfa~~ 398 (413)
T 3vla_A 384 VQFDLATSRVGFSGT 398 (413)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEECCCCEEEEEEe
Confidence 999999999999986
No 33
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=4.4e-49 Score=407.56 Aligned_cols=334 Identities=15% Similarity=0.195 Sum_probs=238.2
Q ss_pred eeEece-eccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCC-------CCcccCCCCcccCCCCCcee-------
Q 010233 78 DIVALK-NYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCY-------FSVACYFHSKYKSSQSSTYK------- 142 (514)
Q Consensus 78 ~~~~l~-n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~-------~~~~C~~~~~f~~~~SsT~~------- 142 (514)
..+||. ++.+.+|+++|+|||| |+|||||+++||+|..|. .+..|..++.|++..+ ++.
T Consensus 3 ~~~pv~~~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~~~~~~~C~s~~C~~~~~~~~~sc-~~~~~~~~~~ 76 (381)
T 1t6e_X 3 VLAPVTKDPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGC-PAPSCGSDKH 76 (381)
T ss_dssp EEEEEEECTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTC-CCCCC-----
T ss_pred eEEeEEecCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCCCCCccCCCCchhccccCCCCCCC-CCccCCcCcC
Confidence 357887 6778999999999997 999999999999996542 1345665667877533 332
Q ss_pred ecCe-EEEEEecCCeE-EEEEEEEEEEEee----eeecCc----eEEEEEecCCccccccccceeeeccccccccCCCcc
Q 010233 143 KNGE-SASIQYGTGAI-AGFFSYDSVKVGD----LVVKDQ----EFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVP 212 (514)
Q Consensus 143 ~~~~-~~~~~Yg~G~~-~G~~~~D~v~ig~----~~i~~~----~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~ 212 (514)
...| .|.+.|++|+. .|.+++|+|++++ ..++++ .|||+.......+ ...++||||||++.++
T Consensus 77 ~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~-~~~~dGIlGLg~~~~s------ 149 (381)
T 1t6e_X 77 DKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL-PRGSTGVAGLANSGLA------ 149 (381)
T ss_dssp -CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS-CTTEEEEEECSSSTTS------
T ss_pred CCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCC-CCCCceEEEeCCCcch------
Confidence 2234 59999999985 8999999999985 466665 5699876522222 3578999999998776
Q ss_pred hHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECCCCCC--CcccceeEEecccc---cceEEEEceEEECCeeccccC
Q 010233 213 VWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPN--HYKGKHTYVPVTQK---GYWQFNMGDVLIGGKPTGYCA 287 (514)
Q Consensus 213 ~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~--~~~g~l~~~pv~~~---~~w~v~l~~i~v~g~~~~~~~ 287 (514)
+..+|.+|+++ +++||+||.+. ..|+|+|||+|.. +|.|++.|+|+... .+|.|.+++|+|+++.+..+.
T Consensus 150 ~~~ql~~~~~~-~~~FS~~L~~~----~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~ 224 (381)
T 1t6e_X 150 LPAQVASAQKV-ANRFLLCLPTG----GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPE 224 (381)
T ss_dssp HHHHHHHHHTC-CSEEEEECCSS----SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCT
T ss_pred hHHHHhhhccc-CceEEEEeCCC----CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEecCCH
Confidence 66789998854 79999999875 3899999998765 58999999999753 467799999999998876443
Q ss_pred C---CceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcc
Q 010233 288 G---GCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGV 364 (514)
Q Consensus 288 ~---~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 364 (514)
. ...+||||||+++++|+++|++|.+++.+.- .....+ . ..+. ... +
T Consensus 225 ~~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~---------~~~~~~----g--~~~~--~~~--------~----- 274 (381)
T 1t6e_X 225 GALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKAL---------AAQHAN----G--APVA--RAV--------E----- 274 (381)
T ss_dssp TCSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHH---------HHC-------------C--CEE--------C-----
T ss_pred HHccCCCEEEECCCccEEeCHHHHHHHHHHHHHhh---------cccccc----c--cccc--ccC--------C-----
Confidence 3 3579999999999999999999999885530 000000 0 0000 000 0
Q ss_pred cccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEE
Q 010233 365 SMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSF 444 (514)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f 444 (514)
.. .....|+..+..... .....+|+|+|
T Consensus 275 ---------~~--------------------------------------~~~~~C~~~~~~~~~-----~~~~~~P~i~f 302 (381)
T 1t6e_X 275 ---------AV--------------------------------------APFGVCYDTKTLGNN-----LGGYAVPNVQL 302 (381)
T ss_dssp ---------CC--------------------------------------TTCSCEEEGGGCCEE-----TTEECCCCEEE
T ss_pred ---------CC--------------------------------------CCCCccCCCCCCccc-----ccCCcCCeEEE
Confidence 00 000122221110000 00126899999
Q ss_pred EEC-CEEEEeCcccceEeecCCCcceEEEceEeccCC---CCCCCcEEeCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 445 TIG-GKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP---PPRGPLWILGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 445 ~f~-g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~---~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
+|+ |++++|++++|+++... ...|+ +|...+.. ...++.||||+.|||++|+|||++++|||||+++
T Consensus 303 ~f~gg~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~ 373 (381)
T 1t6e_X 303 GLDGGSDWTMTGKNSMVDVKQ--GTACV-AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLP 373 (381)
T ss_dssp EETTSCEEEECHHHHEEEEET--TEEEE-SEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECC
T ss_pred EECCCcEEEeCCCeEEEEcCC--CeEEE-EEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEeccc
Confidence 997 59999999999998643 36798 57765421 1123689999999999999999999999999974
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=4.8e-48 Score=374.22 Aligned_cols=238 Identities=68% Similarity=1.173 Sum_probs=217.0
Q ss_pred ceeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe
Q 010233 77 TDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA 156 (514)
Q Consensus 77 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~ 156 (514)
...+||.|+.+.+|+++|.||||||++.|+|||||+++||+|..|..+..|..++.|+|++|+||+..++.|.+.|++|+
T Consensus 2 ~~~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs 81 (239)
T 1b5f_A 2 SAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS 81 (239)
T ss_dssp CEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE
T ss_pred CceeeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc
Confidence 34689999999999999999999999999999999999999999964568998999999999999999999999999999
Q ss_pred EEEEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCC
Q 010233 157 IAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQ 236 (514)
Q Consensus 157 ~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~ 236 (514)
+.|.+++|+|++++..++++.||++....+..|....++||||||++..+ .|++++|++||+|++++||+||.+..
T Consensus 82 ~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s----~p~~~~l~~qg~i~~~~FS~~l~~~~ 157 (239)
T 1b5f_A 82 ITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTIS----VPVWYNMLNQGLVKERRFSFWLNRNV 157 (239)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSS----CCHHHHHHHTTCCSSSEEEEEECCSC
T ss_pred EEEEEEEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccc----cHHHHHHHHCCCCCCCEEEEEEeCCC
Confidence 99999999999999999999999998765544555678999999998776 67889999999999999999998764
Q ss_pred CCCCCceEEECCCCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhc
Q 010233 237 QEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIG 316 (514)
Q Consensus 237 ~~~~~G~L~fGg~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~ 316 (514)
+....|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|.|+++.+.++.....++|||||+++++|++++++|.++++
T Consensus 158 ~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i~~~ig 237 (239)
T 1b5f_A 158 DEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIG 237 (239)
T ss_dssp SSSCCEEEEETSCCGGGEEEEEEEEEEEEETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCcChhhccCceEEEEcccCCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHHHHHHHHHHhC
Confidence 33458999999999999999999999998899999999999999988766677899999999999999999999999997
Q ss_pred CC
Q 010233 317 AS 318 (514)
Q Consensus 317 ~~ 318 (514)
++
T Consensus 238 a~ 239 (239)
T 1b5f_A 238 AN 239 (239)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=2.3e-44 Score=349.10 Aligned_cols=241 Identities=49% Similarity=0.932 Sum_probs=210.5
Q ss_pred eeeeecCceEEEEEecCCccccccccceeeeccccccccCCCcchHHHHHHcCCCCCCeEEEEecCCCCCCCCceEEECC
Q 010233 169 GDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGG 248 (514)
Q Consensus 169 g~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~~~~l~~L~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg 248 (514)
|+.+++++.|||++...+..|....++||||||++..+....+|++++|++||.|++++||+||.+..+....|+|+|||
T Consensus 1 gg~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg 80 (241)
T 1lya_B 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG 80 (241)
T ss_dssp CCEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETS
T ss_pred CCeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECC
Confidence 46788999999999876655666678999999999888777789999999999999999999998874333479999999
Q ss_pred CCCCCcccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHHHHHHHHHHhcCCCcccccchhH
Q 010233 249 VDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAV 328 (514)
Q Consensus 249 ~D~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~~~~~l~~~i~~~~~~~~~c~~~ 328 (514)
+|+++|.|++.|+|+.+.++|.|.+++|+|+++.+. +..+..+++||||+++++|.+++++|.+++++..
T Consensus 81 ~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~--------- 150 (241)
T 1lya_B 81 TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTL-CKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVP--------- 150 (241)
T ss_dssp CCGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCEE-STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE---------
T ss_pred cCHHHcCCceEEEECccccEEEEEEeEEEECCeeEe-ccCCCEEEEECCCccccCCHHHHHHHHHHhCCee---------
Confidence 999999999999999999999999999999998642 4567899999999999999999999999986640
Q ss_pred HHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHHHHHHHhhhchhH
Q 010233 329 VEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQ 408 (514)
Q Consensus 329 ~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
T Consensus 151 -------------------------------------------------------------------------------- 150 (241)
T 1lya_B 151 -------------------------------------------------------------------------------- 150 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhccCCCCCCCceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEE
Q 010233 409 ENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWI 488 (514)
Q Consensus 409 ~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~i 488 (514)
...|.|.++|+....+|+|+|+|+|++++|+|++|+++........|+++|+..+.+.+.++.||
T Consensus 151 ---------------~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~i 215 (241)
T 1lya_B 151 ---------------LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWI 215 (241)
T ss_dssp ---------------EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEE
T ss_pred ---------------ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEE
Confidence 11356899999888899999999999999999999998765445689999998765444567899
Q ss_pred eCHhhhcceEEEEeCCCCeEEEEEcC
Q 010233 489 LGDVFMGRYHTVFDFGELRVGFAEAA 514 (514)
Q Consensus 489 LG~~fl~~~y~vfD~~~~riGfa~~~ 514 (514)
||++|||++|+|||++++|||||+++
T Consensus 216 lG~~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 216 LGDVFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp ECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred echHHhcceEEEEECCCCEEEEEEcC
Confidence 99999999999999999999999985
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.89 E-value=2.6e-23 Score=171.07 Aligned_cols=93 Identities=63% Similarity=1.089 Sum_probs=86.8
Q ss_pred eeEeceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCC-CcccCCCCcccCCCCCceeecCeEEEEEecCCe
Q 010233 78 DIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYF-SVACYFHSKYKSSQSSTYKKNGESASIQYGTGA 156 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~ 156 (514)
..+||.|+.+..|+++|.||||||++.|+|||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|+
T Consensus 3 ~~~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~~~y~p~~SsT~~~~~~~~~i~Yg~Gs 82 (97)
T 1lya_A 3 IPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGS 82 (97)
T ss_dssp EEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE
T ss_pred ceEeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCCCCCCchhCCCceeCCCcEEEEECCcE
Confidence 4589999999999999999999999999999999999999999952 247988999999999999999999999999999
Q ss_pred EEEEEEEEEEEEee
Q 010233 157 IAGFFSYDSVKVGD 170 (514)
Q Consensus 157 ~~G~~~~D~v~ig~ 170 (514)
+.|.+++|+|+|++
T Consensus 83 ~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 83 LSGYLSQDTVSVPC 96 (97)
T ss_dssp EEEEEEEEEEEESC
T ss_pred EEEEEEEEEEEECC
Confidence 99999999999975
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.84 E-value=5.6e-21 Score=154.37 Aligned_cols=87 Identities=74% Similarity=1.209 Sum_probs=77.3
Q ss_pred CceeeeCCCCCCCCeEEEEECCEEEEeCcccceEeecCCCcceEEEceEeccCCCCCCCcEEeCHhhhcceEEEEeCCCC
Q 010233 427 GESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWILGDVFMGRYHTVFDFGEL 506 (514)
Q Consensus 427 g~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~ 506 (514)
|.|.+||+.++.+|+|+|+|+|++++|+|++|+++........|+++|++.+.+ +.++.||||++|||++|+|||++++
T Consensus 1 G~y~v~C~~~~~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~-~~~~~~ILGd~Fl~~~y~vfD~~~~ 79 (87)
T 1b5f_B 1 EELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDAT-LLGPLWILGDVFMRPYHTVFDYGNL 79 (87)
T ss_dssp CCCEECGGGGGGCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCB-SSSBEEEECHHHHTTEEEEEETTTT
T ss_pred CcEEEECCCCCcCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCC-CCCCeEEechHHhccEEEEEECCCC
Confidence 578999998889999999999999999999999987554456899999987654 4557899999999999999999999
Q ss_pred eEEEEEcC
Q 010233 507 RVGFAEAA 514 (514)
Q Consensus 507 riGfa~~~ 514 (514)
|||||+++
T Consensus 80 riGfA~~~ 87 (87)
T 1b5f_B 80 LVGFAEAA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999985
No 38
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=99.58 E-value=6.7e-16 Score=129.03 Aligned_cols=106 Identities=51% Similarity=0.945 Sum_probs=76.8
Q ss_pred CCCcccccchhHHHhhhhHHHHHhhhccCcccccccCcccccCCCCcccccccccccccCccccCccccccchhhHHHHH
Q 010233 317 ASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVV 396 (514)
Q Consensus 317 ~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
++|.+...|+.++++|++.++++++++++|+.+|.+.|+|..++.+.++++++.++++.+..++ ......|.+|+|+++
T Consensus 3 a~g~~~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~~lglC~~~~~~~~~~~i~~vv~~~~~~~~-~~~~~~C~~Ce~~V~ 81 (108)
T 3rfi_A 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSS-VGEAPLCTACEMAVV 81 (108)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSSCC-------------------------CCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCcCCCccccccccccccccccccccc-CCCCCcChhHHHHHH
Confidence 4566778899999999999999999999999999999999999988888888877665433222 237889999999999
Q ss_pred HHHHHhhhchhHHHHHHHhhhhccCCC
Q 010233 397 WMQNQLQQNQTQENILQYVNELCDRMP 423 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
|+++.|.+|.|+++|+.++++.|.++|
T Consensus 82 ~ie~~L~~N~Te~eI~~~l~k~C~~LP 108 (108)
T 3rfi_A 82 WMQNQLKQEGTKEKVLEYVNQLCEKIP 108 (108)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999876
No 39
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=96.86 E-value=0.00059 Score=52.90 Aligned_cols=47 Identities=26% Similarity=0.654 Sum_probs=41.1
Q ss_pred cccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCC
Q 010233 385 NAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCG 434 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~ 434 (514)
...|..|++++.++++.|..|.|+++|.+++++.|..+|.. +...|.
T Consensus 2 ~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~~---~~~~C~ 48 (80)
T 3bqp_A 2 GGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP---YQKQCD 48 (80)
T ss_dssp CTTHHHHHHHHHHHHHHSCTTCCHHHHHHHHHHHGGGSCGG---GHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCCCc---cchhhH
Confidence 45799999999999999999999999999999999999863 444554
No 40
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=96.65 E-value=0.00093 Score=53.30 Aligned_cols=48 Identities=23% Similarity=0.649 Sum_probs=42.0
Q ss_pred ccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCC
Q 010233 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCG 434 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~ 434 (514)
++..|..|++++.++++.|..|.|+++|.+++++.|..+|.. +...|.
T Consensus 4 ~~~~C~~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~~lp~~---~~~~C~ 51 (91)
T 2qyp_A 4 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKS---LSEECQ 51 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTSCSS---TTTTHH
T ss_pred CCCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHCCCC---cccchH
Confidence 467899999999999999999999999999999999999864 344554
No 41
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=96.52 E-value=0.0016 Score=50.82 Aligned_cols=41 Identities=34% Similarity=0.699 Sum_probs=38.2
Q ss_pred cccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCC
Q 010233 385 NAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSP 425 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 425 (514)
+..|..|++++.++++.+..|.|+++|++++.+.|..+|..
T Consensus 3 ~~~C~~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C~~lp~~ 43 (83)
T 4ddj_A 3 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP 43 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTSCTT
T ss_pred CCcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhCCCc
Confidence 45799999999999999999999999999999999999864
No 42
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=96.20 E-value=0.0031 Score=49.21 Aligned_cols=41 Identities=24% Similarity=0.673 Sum_probs=38.0
Q ss_pred ccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 010233 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPS 424 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
++..|..|++++.++++.+..|.|+++|++++.+.|..+|.
T Consensus 3 ~~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~ 43 (83)
T 2gtg_A 3 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPK 43 (83)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSCH
T ss_pred CCCcChhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999999999999999999874
No 43
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=95.87 E-value=0.005 Score=46.91 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=35.3
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 010233 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPS 424 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
.|..|++++..+++.| +|.|+++|++.+.+.|..+|.
T Consensus 3 ~C~~C~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~~ 39 (74)
T 1l9l_A 3 DYRTCLTIVQKLKKMV-DKPTQRSVSNAATRVCRTGRS 39 (74)
T ss_dssp HHHHHHHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSCH
T ss_pred CChHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHhCCh
Confidence 6999999999999999 999999999999999999874
No 44
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=95.42 E-value=0.0087 Score=45.96 Aligned_cols=40 Identities=18% Similarity=0.522 Sum_probs=36.7
Q ss_pred cccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCC
Q 010233 385 NAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSP 425 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 425 (514)
...|..|++++..+++.+..| |+++|++++.+.|..+|..
T Consensus 2 ~~~C~~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C~~lp~~ 41 (77)
T 1of9_A 2 EILCNLCTGLINTLENLLTTK-GADKVKDYISSLCNKASGF 41 (77)
T ss_dssp CSSHHHHHHHHHHHHHHCSSS-CSHHHHHHHHHHHTTCSST
T ss_pred CCcchhHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHcCChH
Confidence 356999999999999999999 9999999999999999754
No 45
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=95.38 E-value=0.01 Score=46.05 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=37.6
Q ss_pred cccchhhHHHHHHHHHHhhhchhH-HHHHHHhhhhccCCCC
Q 010233 385 NAMCSACEMAVVWMQNQLQQNQTQ-ENILQYVNELCDRMPS 424 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~~~~ 424 (514)
...|..|++++..+++.+..|.|+ ++|.+++.+.|..+|.
T Consensus 3 ~~~C~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~C~~lp~ 43 (81)
T 1n69_A 3 GDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGP 43 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCT
T ss_pred CCcchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHcCc
Confidence 457999999999999999999999 9999999999999985
No 46
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=95.38 E-value=0.0073 Score=46.52 Aligned_cols=38 Identities=13% Similarity=0.531 Sum_probs=36.4
Q ss_pred cchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCC
Q 010233 387 MCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPS 424 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
.|..|++++..+++.+..|.|+++|+.++.+.|..+|.
T Consensus 3 ~C~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~lp~ 40 (78)
T 1nkl_A 3 FCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCS
T ss_pred cchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCch
Confidence 59999999999999999999999999999999999875
No 47
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=94.08 E-value=0.0066 Score=49.02 Aligned_cols=50 Identities=14% Similarity=0.354 Sum_probs=42.5
Q ss_pred ccccchhhHHHHHHHHHHhhhchhHHHHHHHhhhhccCCCCCCCceeeeCCC
Q 010233 384 NNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGK 435 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~ 435 (514)
+...|..|++++..+++.+ |.|+++|++.+.+.|..+|.....+.-.|..
T Consensus 20 ~~~~C~~C~~vV~~ve~~l--n~t~~~I~~~L~~~C~~lp~~ipf~~~~C~~ 69 (99)
T 2js9_A 20 SALSCQMCELVVKKYEGSA--DKDANVIKKDFDAECKKLFHTIPFGTRECDH 69 (99)
T ss_dssp CSSTHHHHHHHHHHHTTTS--SCCHHHHHHHHHHHHHTGGGGSTTHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 5678999999999999999 8999999999999999998543445566763
No 48
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=93.67 E-value=0.051 Score=42.98 Aligned_cols=39 Identities=41% Similarity=0.859 Sum_probs=34.7
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccccC
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFD 359 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~ 359 (514)
+...|+.++++|++.+++.+.++.+|+.+|...|+|..+
T Consensus 46 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~~ 84 (91)
T 2qyp_A 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGT 84 (91)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHTTTCC---
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCCCc
Confidence 677899999999999999999999999999999999865
No 49
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.1 Score=45.12 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred eceeccCceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCCe--EE
Q 010233 81 ALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGA--IA 158 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G~--~~ 158 (514)
|..-.....+++++.|+ ++++++++|||++.+.+..... ..+.-....+. .+. ....|.|. ..
T Consensus 18 p~~~~~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~~~a---~~lgl~~~~~~----~~~------~~a~g~g~~~~~ 82 (148)
T 2i1a_A 18 PEMFTQVPMLYINIEIN--NYPVKAFVDTGAQTTIMSTRLA---KKTGLSRMIDK----RFI------GEARGVGTGKII 82 (148)
T ss_dssp -----CCCCCEEEEEET--TEEEEEEECTTCSSCEEEHHHH---HHHTGGGGCBC----CCC-----------------C
T ss_pred chhhcccceEEEEEEEC--CEEEEEEEECCCCccccCHHHH---HHcCCCccCCc----ceE------EEEecCCCcccc
Confidence 33333467789999998 5899999999999998863211 11111011111 111 01122222 34
Q ss_pred EEEEEEEEEEeeeeecCceEEEEEecCCccccccccceeeecc
Q 010233 159 GFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (514)
Q Consensus 159 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (514)
|.+..+.+.+|+...+ ..|.+.. .+.+||||+-
T Consensus 83 ~~~~~~~i~ig~~~~~-~~~~vl~---------~~~d~iLG~d 115 (148)
T 2i1a_A 83 GRIHQAQVKIETQYIP-CSFTVLD---------TDIDVLIGLD 115 (148)
T ss_dssp EEEEEEEEEETTEEEE-EEEEEEC---------SSCSEEECHH
T ss_pred cEEEEEEEEECCEEec-eeEEEec---------CCCCeEecHH
Confidence 6666788999987754 5554432 1358999985
No 50
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=92.23 E-value=0.089 Score=40.22 Aligned_cols=37 Identities=24% Similarity=0.683 Sum_probs=34.9
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~ 357 (514)
+...|+.++++|++.+++.+.+..+|+.+|...|+|+
T Consensus 43 ~~~~C~~~v~~y~~~ii~~l~~~~~P~~iC~~l~~C~ 79 (80)
T 3bqp_A 43 YQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACP 79 (80)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHTTSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHCCCHHHHHhhcCCCC
Confidence 5678999999999999999999999999999999996
No 51
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.37 Score=41.51 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=23.5
Q ss_pred cEEeCHhhhcceEEEEeCCCCeEEEE
Q 010233 486 LWILGDVFMGRYHTVFDFGELRVGFA 511 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa 511 (514)
..|||..||+++-+.+|+.++++-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 47999999999999999999998763
No 52
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=90.56 E-value=0.057 Score=43.46 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=34.8
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~ 357 (514)
+...|+.++++|.+.+++++....+|+.+|...|+|+
T Consensus 63 ~~~~C~~~V~~y~~~II~~L~~~~~P~~VC~~L~lC~ 99 (99)
T 2js9_A 63 GTRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNECP 99 (99)
T ss_dssp HHHHHHTTTTTTHHHHHHHHHHTCCTTHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Confidence 5677999999999999999999999999999999995
No 53
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=90.38 E-value=0.077 Score=40.66 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=35.0
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~ 357 (514)
+...|+.++++|.+.+++.+....+|+.+|...|+|.
T Consensus 41 ~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC~ 77 (78)
T 1nkl_A 41 LRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICK 77 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccCCCC
Confidence 6678999999999999999999999999999999995
No 54
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=89.96 E-value=0.1 Score=40.37 Aligned_cols=38 Identities=42% Similarity=0.882 Sum_probs=34.6
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCccccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTF 358 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~ 358 (514)
+...|+.+++.|++.+++.+.+..+|+.+|...|+|..
T Consensus 45 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~ 82 (83)
T 2gtg_A 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCC-
T ss_pred chhHHHHHHHHHHHHHHHHHHHCCCHHHHHHhcCCCCC
Confidence 45679999999999999999999999999999999963
No 55
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=89.47 E-value=0.77 Score=39.70 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=23.3
Q ss_pred cEEeCHhhhcceEEEEeCCCCeEEEE
Q 010233 486 LWILGDVFMGRYHTVFDFGELRVGFA 511 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa 511 (514)
..|||..||+++-.+.|++++++-|.
T Consensus 108 d~LLGmD~L~~~~~~ID~~~~~L~l~ 133 (148)
T 3s8i_A 108 DMLLGLDMLRRHQCSIDLKKNVLVIG 133 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEECT
T ss_pred CeeccHHHHHhCCEEEEcCCCEEEEc
Confidence 57999999999999999999998663
No 56
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=89.36 E-value=0.45 Score=41.17 Aligned_cols=91 Identities=15% Similarity=0.284 Sum_probs=53.2
Q ss_pred CceEEEEEEecCCCCeeEEEecCCCCceeEeCCCCCCCcccCCCCcccCCCCCceeecCeEEEEEecCC--eEEEEEEEE
Q 010233 87 DAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTG--AIAGFFSYD 164 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C~~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~G--~~~G~~~~D 164 (514)
...|++++.|. ++++++++|||++.+.+... |. ..|.-...-+. . +. . ...+.| ...|.+...
T Consensus 22 ~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~-~A--~rlGL~~~~~~-~---~~-----~-~a~g~G~~~~~g~v~~~ 86 (148)
T 3s8i_A 22 VTMLYINCKVN--GHPLKAFVDSGAQMTIMSQA-CA--ERCNIMRLVDR-R---WA-----G-VAKGVGTQRIIGRVHLA 86 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH-HH--HHTTCGGGEEG-G---GC-----E-ECCC---CEEEEEEEEE
T ss_pred cCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH-HH--HHcCCccccCc-c---ee-----E-EEEcCCccEEEEEEEEE
Confidence 45789999998 69999999999999998642 21 12221100000 0 00 0 112222 246777778
Q ss_pred EEEEeeeeecCceEEEEEecCCccccccccceeeecc
Q 010233 165 SVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLG 201 (514)
Q Consensus 165 ~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~~GIlGLg 201 (514)
.+.+|+..++ ..|.+.. ....++|||+-
T Consensus 87 ~I~Ig~~~~~-~~~~Vle--------~~~~d~LLGmD 114 (148)
T 3s8i_A 87 QIQIEGDFLQ-CSFSILE--------DQPMDMLLGLD 114 (148)
T ss_dssp EEEETTEEEE-EEEEEET--------TCSSSEEECHH
T ss_pred EEEECCEEEE-EEEEEeC--------CCCcCeeccHH
Confidence 8999887653 4444332 12347999984
No 57
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=88.62 E-value=0.097 Score=39.97 Aligned_cols=38 Identities=18% Similarity=0.494 Sum_probs=34.8
Q ss_pred CcccccchhHHHhhhhHHHHHhhhccCcccccccCccc
Q 010233 319 GVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 356 (514)
+.+...|+.++++|.+.+++.+.+..+|+.+|...|+|
T Consensus 40 ~~~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC 77 (77)
T 1of9_A 40 GFIATLCTKVLDFGIDKLIQLIEDKVDANAICAKIHAC 77 (77)
T ss_dssp STTHHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCC
Confidence 34567899999999999999999999999999999988
No 58
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=86.95 E-value=0.14 Score=39.48 Aligned_cols=37 Identities=38% Similarity=0.797 Sum_probs=33.8
Q ss_pred ccccchhHHHhhhhHHHHHhhhcc-CcccccccCcccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEA-HPKKICSQMGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~c~ 357 (514)
+...|+.+++.|++.+++.+.+++ +|+.+|...|+|.
T Consensus 45 ~~~~C~~~v~~y~~~ii~~l~~~~~~p~~vC~~l~lC~ 82 (83)
T 4ddj_A 45 MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCE 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCHHHHHhHcCCCC
Confidence 356799999999999999999995 9999999999996
No 59
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=82.92 E-value=0.4 Score=36.82 Aligned_cols=36 Identities=28% Similarity=0.833 Sum_probs=30.9
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCcccccccCcccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~ 357 (514)
+...|+.++++|++.+++.+ +..+|+.+|...|+|+
T Consensus 45 ~~~~C~~~V~~y~~~ii~~l-~~~~P~~iC~~lglC~ 80 (81)
T 1n69_A 45 MADICKNYISQYSEIAIQMM-MHMQPKEICALVGFCD 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCHHHHHhhcCCCC
Confidence 56689999999999776655 4799999999999996
No 60
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=78.27 E-value=0.65 Score=35.03 Aligned_cols=32 Identities=16% Similarity=0.476 Sum_probs=29.5
Q ss_pred ccccchhHHHhhhhHHHHHhhhccCccccccc
Q 010233 321 VSQQCKAVVEQYGQTILDLLLFEAHPKKICSQ 352 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~ 352 (514)
+...|+.++++|++.+++.++++.+|+.+|..
T Consensus 41 ~~~~C~~~V~~y~~~Ii~~L~~~~~P~~IC~~ 72 (74)
T 1l9l_A 41 WRDVCRNFMRRYQSRVIQGLVAGETAQQICED 72 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Confidence 56679999999999999999999999999975
No 61
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=76.74 E-value=2.8 Score=33.43 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=24.9
Q ss_pred EEEEEecCCCCeeEEEecCCCCceeEeCCCC
Q 010233 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (514)
++.|.|| +|.+.+++|||.+++.+...+.
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~~ 38 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMSL 38 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCSS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecccC
Confidence 5778999 6999999999999999976544
No 62
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=75.13 E-value=2.6 Score=33.97 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.7
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeC
Q 010233 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPS 118 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~ 118 (514)
-++.|.|| +|.+.+++|||.+++.+..
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEcc
Confidence 46789999 6999999999999999973
No 63
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=71.59 E-value=4.2 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=24.8
Q ss_pred EEEEEecCCCCeeEEEecCCCCceeEeCCCC
Q 010233 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (514)
++.|.|| +|.+.+++|||.+++-+...+.
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~~ 38 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIEL 38 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCccc
Confidence 6779999 6999999999999999965444
No 64
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=70.06 E-value=3.8 Score=33.35 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=26.3
Q ss_pred EEEEEec---CCCCeeEEEecCCCCceeEeCCCCC
Q 010233 91 YGEIGIG---TPPQKFTVIFDTGSSNLWVPSTNCY 122 (514)
Q Consensus 91 ~~~i~iG---tP~Q~~~v~lDTGSs~~Wv~~~~C~ 122 (514)
.+.|.|| +|+|.+..++|||.+++.+...+++
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~lP 46 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFS 46 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGSC
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccCC
Confidence 5566666 7899999999999999999866553
No 65
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=60.66 E-value=7 Score=32.05 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=22.5
Q ss_pred EEEEEecCCCCeeEEEecCCCCceeEeCC
Q 010233 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPST 119 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~ 119 (514)
++ |.|| +|.+.+++|||.+++.+...
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 45 8999 69999999999999999743
No 66
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=55.50 E-value=11 Score=30.78 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.9
Q ss_pred EEEEEecCCCCeeEEEecCCCCceeEeCCCC
Q 010233 91 YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (514)
.+.+.|| +|.+..++|||.+++-+...+.
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 5678898 6999999999999999976554
No 67
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=55.18 E-value=3.9 Score=31.70 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=39.7
Q ss_pred HHHHHHHHHh-cCCCcccccchhHHHhhhhHHHHHhhhccCcccccccCccc
Q 010233 306 TVITMINHAI-GASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLC 356 (514)
Q Consensus 306 ~~~~~l~~~i-~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 356 (514)
..+++.=+.+ ++..+....|+.++.+|.+.|++.+-.+.+|+.+|...+.|
T Consensus 36 ~~~d~~Ckk~~~~ip~a~k~C~~~v~~~~d~II~eLe~g~~P~~VC~~L~~C 87 (87)
T 3s64_A 36 KEFIQGCMTLIGWLPYAEKECKALAKIEMGAIKTLLENGSAPEEICTTLHAC 87 (87)
T ss_dssp HHHHHHHHHHHCSSTTHHHHHHHHHHHHHHHHHHHHHTTCCTTTHHHHHHCC
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHhccC
Confidence 3344444444 44445567899999999999999999999999999887776
No 68
>3vcm_P Prorenin; aspartic proteases, hydrolase; HET: NAG; 2.93A {Homo sapiens}
Probab=50.69 E-value=10 Score=24.87 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=18.5
Q ss_pred ceEEEeeeeccCChhhhhhhchh
Q 010233 29 GLVRIGLKKMKLDPNNRLAARLE 51 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~ 51 (514)
.++||||+|.++.++...+.+..
T Consensus 7 ~l~RIPL~k~kS~R~~l~e~g~~ 29 (43)
T 3vcm_P 7 TFKRIFLKRMPSIRESLKERGVD 29 (43)
T ss_dssp CCEEEEEEECCCHHHHHHHHTCC
T ss_pred ceeEEeeeecccHHHHHHHcCch
Confidence 57899999999888887776554
No 69
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=49.84 E-value=17 Score=30.45 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=25.1
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCCC
Q 010233 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN 120 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~ 120 (514)
.-++.+.|+ +|.+.+++|||.+++.+....
T Consensus 22 RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~~ 51 (132)
T 3slz_A 22 EPRITLKVG--GQPVTFLVDTGAQHSVLTQNP 51 (132)
T ss_dssp SSEEEEEET--TEEEEEEECTTCSSCEECSCC
T ss_pred CCEEEEEEC--CEEEEEEEeCCCCeEEEcccc
Confidence 447779999 699999999999999997543
No 70
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=41.01 E-value=20 Score=32.32 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.7
Q ss_pred eEEEEEEecCCCCeeEEEecCCCCceeEeCC
Q 010233 89 QYYGEIGIGTPPQKFTVIFDTGSSNLWVPST 119 (514)
Q Consensus 89 ~Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~ 119 (514)
.-.+.|.|| +|.+.+++|||.+++.+...
T Consensus 8 RP~vtv~I~--Gq~~e~LLDTGAD~TVl~~~ 36 (203)
T 3ka2_A 8 RPLVTIRIG--GQLKEALLDTGADDTVIEEL 36 (203)
T ss_dssp CCEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCeEEEEEC--CEEEEEEEecCCCceEEecc
Confidence 346789999 69999999999999999643
No 71
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=40.19 E-value=24 Score=29.18 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=19.8
Q ss_pred ecCCCCeeEEEecCCCCceeEeCCCC
Q 010233 96 IGTPPQKFTVIFDTGSSNLWVPSTNC 121 (514)
Q Consensus 96 iGtP~Q~~~v~lDTGSs~~Wv~~~~C 121 (514)
|| +|.+..++|||.+++.+...+.
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEEDW 50 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTTS
T ss_pred CC--CEEEEEEecCCCCcEEEecccC
Confidence 55 4778999999999999986554
No 72
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=38.59 E-value=28 Score=33.61 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=30.3
Q ss_pred ccceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 255 KGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 255 ~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
.|.+...|+.....|.++ |.||.+. ..+++|||++.+++|..
T Consensus 3 ~g~v~~~~~~~~~~Y~~~---i~iG~Q~-------~~v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 3 SGVATNTPTANDEEYITP---VTIGGTT-------LNLNFDTGSADLWVFST 44 (323)
T ss_dssp CEEEEEEECGGGSCEEEE---EEETTEE-------EEEEEETTCCCEEECBT
T ss_pred CCceeeeecCCCCEEEEE---EEECCEE-------EEEEEeCCCcceEEecC
Confidence 355666777666677654 6778443 34999999999999964
No 73
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=35.66 E-value=30 Score=33.41 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=29.3
Q ss_pred cceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
|.+...|+.....|.++ |.||.+. ..+++|||++.+++|..
T Consensus 3 ~~v~~~~~~~~~~Y~~~---i~iG~Q~-------~~v~~DTGSs~lWv~~~ 43 (325)
T 1ibq_A 3 GSAVTTPQNNDEEYLTP---VTVGKST-------LHLDFDTGSADLWVFSD 43 (325)
T ss_dssp EEEEEEECTTTSCEEEE---EEEBTEE-------EEEEEETTCCCEEEECT
T ss_pred ceEEeEEcCCCCEEEEE---EEECCEE-------EEEEEeCCCccceEeeC
Confidence 45556676666677654 6677443 34999999999999864
No 74
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=35.47 E-value=33 Score=33.06 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=29.4
Q ss_pred cceeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 256 GKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
|.+...|+.....|.++ |.||.+. ..+++|||++.+++|..
T Consensus 4 ~~v~~~~~~~~~~Y~~~---i~iG~q~-------~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 4 GSVTTNPTSNDEEYITQ---VTVGDDT-------LGLDFDTGSADLWVFSS 44 (323)
T ss_dssp EEEEEEECGGGCCEEEE---EEETTEE-------EEEEEETTCCCEEECBT
T ss_pred CceeeeEcCCCCEEEEE---EEECCEE-------EEEEEcCCCcceEEecC
Confidence 45566677666667654 6777433 34999999999999964
No 75
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=32.69 E-value=24 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=22.3
Q ss_pred ccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 266 KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 266 ~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
...|.+ .|.||.- .+...++||||++.+++|..
T Consensus 12 ~~~Y~~---~i~iGTP-----~Q~~~v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 12 DAQYYG---EIGIGTP-----PQCFTVVFDTGSSNLWVPSI 44 (97)
T ss_dssp TTEEEE---EEEETTT-----TEEEEEEEETTCCCEEEEBT
T ss_pred CCeEEE---EEEECCC-----CeEEEEEEeCCCCceEEeEc
Confidence 344544 3667732 23456999999999999953
No 76
>1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P
Probab=29.06 E-value=31 Score=21.90 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.2
Q ss_pred eEEEeeeeccCChhhhhhhch
Q 010233 30 LVRIGLKKMKLDPNNRLAARL 50 (514)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~ 50 (514)
++||||+|.++.++...+.+.
T Consensus 2 l~RIpL~K~~s~R~~l~~~g~ 22 (43)
T 1htr_P 2 VVKVPLKKFKSIRETMKEKGL 22 (43)
T ss_dssp CEEEEEEECCCHHHHHHHTTC
T ss_pred eEEEeeeEcchHHHHHHHcCc
Confidence 689999999888777665443
No 77
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=27.27 E-value=50 Score=32.22 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=29.7
Q ss_pred ccceeEEeccc--ccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 255 KGKHTYVPVTQ--KGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 255 ~g~l~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
+|.+...|+.+ ...|.+. |.||.- .+...++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~~~~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDFDLEEYAIP---VSIGTP-----GQDFYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEETTTTEEEEE---EEETTT-----TEEEEEEEETTCCCCEEEBT
T ss_pred CCccceEEeecCCCCEEEEE---EEECCC-----CcEEEEEEcCCCCCeEECCC
Confidence 46666778754 4556554 667732 23455999999999999954
No 78
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=26.78 E-value=31 Score=20.69 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=15.4
Q ss_pred ceEEEeeeeccCChhhhhhhc
Q 010233 29 GLVRIGLKKMKLDPNNRLAAR 49 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~ 49 (514)
.++||||+|.++.+....+.+
T Consensus 2 ~l~rIpL~K~~s~r~~l~~~g 22 (35)
T 1tzs_P 2 SLHRVPLRRHPSLKKKLRARS 22 (35)
T ss_pred cEEEEEeEEchHHHHHHHHcc
Confidence 478999999877766655444
No 79
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=25.71 E-value=73 Score=29.07 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=26.8
Q ss_pred eEeceeccCceEEEE---EEecCC-----CCeeEEEecCCCCceeEeC
Q 010233 79 IVALKNYMDAQYYGE---IGIGTP-----PQKFTVIFDTGSSNLWVPS 118 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~---i~iGtP-----~Q~~~v~lDTGSs~~Wv~~ 118 (514)
.+|+.+ ...|.++ |.||.. .....++||||++.+++|.
T Consensus 181 ~~p~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~ 226 (239)
T 1b5f_A 181 YVPVTY--QYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPT 226 (239)
T ss_dssp EEEEEE--ETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECH
T ss_pred EEEccc--CCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCH
Confidence 356654 3467664 678752 3456899999999999985
No 80
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=24.58 E-value=62 Score=31.14 Aligned_cols=43 Identities=23% Similarity=0.084 Sum_probs=28.1
Q ss_pred cceeEE-ecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 256 GKHTYV-PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~-pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
|.+... |......|.+ .|.||.- .+...+++|||++.+++|..
T Consensus 3 ~~v~~~~~~~~~~~Y~~---~i~iGTP-----~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 3 GSATTTPIDSLDDAYIT---PVQIGTP-----AQTLNLDFDTGSSDLWVFSS 46 (329)
T ss_dssp EEEEEEESSTTCCCEEE---EEEETTT-----TEEEEEEEETTCCCEEECBT
T ss_pred ceeEeeecCCCCCEEEE---EEEECCC-----CeEEEEEECCCCCCeEEecC
Confidence 334445 5555566655 4677731 23455999999999999964
No 81
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=23.53 E-value=66 Score=30.91 Aligned_cols=43 Identities=21% Similarity=0.071 Sum_probs=27.9
Q ss_pred cceeEE-ecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 256 GKHTYV-PVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~-pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
|.+... |......|.+ .|.||.- .+...+++|||++.+++|..
T Consensus 3 ~~v~~~~~~~~~~~Y~~---~i~iGTP-----~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 3c9x_A 3 GSAPNHPSDSADSEYIT---SVSIGTP-----AQVLPLDFDTGSSDLWVFSS 46 (329)
T ss_dssp EEEEEEESSTTCCCEEE---EEEETTT-----TEEEEEEEETTCCCEEECBT
T ss_pred cceeeecCCCCCCEEEE---EEEECCC-----CeEEEEEEcCCCCCeEEecC
Confidence 344445 4445556655 4677732 23455999999999999964
No 82
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=21.77 E-value=78 Score=30.32 Aligned_cols=41 Identities=20% Similarity=-0.004 Sum_probs=26.1
Q ss_pred eeEEecccccceEEEEceEEECCeeccccCCCceEEEcCCCCCcccCHH
Q 010233 258 HTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTT 306 (514)
Q Consensus 258 l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aiiDSGtt~i~lP~~ 306 (514)
+.-.+......|.++ |.||. +.+...+++|||++.+++|..
T Consensus 6 v~~~~~~~~~~Y~~~---i~iGT-----P~q~~~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 6 VPMTDYGNDIEYYGQ---VTIGT-----PGKKFNLDFDTGSSDLWIAST 46 (325)
T ss_dssp EEEEEETTTTEEEEE---EEETT-----TTEEEEEEEETTCCCCEEEBT
T ss_pred eeeeecCCCCEEEEE---EEECC-----CCeEEEEEEcCCCCCEEEccC
Confidence 333444445556554 66773 123455999999999999854
No 83
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=21.02 E-value=73 Score=28.66 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.4
Q ss_pred EEEEEEecCCCCeeEEEecCCCCceeEeCCC
Q 010233 90 YYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN 120 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~lDTGSs~~Wv~~~~ 120 (514)
=.+.+.|| +|.+..++|||.+++.+...+
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~~~ 141 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEELN 141 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECSCC
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeeccc
Confidence 36788999 699999999999999996443
Done!