BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010234
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/492 (52%), Positives = 326/492 (66%), Gaps = 41/492 (8%)
Query: 9 VPLDHKSRNLILDALHEMSTG--ALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNY 66
VP+ + IL + E TG LRCL A +D P E +L + S +
Sbjct: 536 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMVLDDSSRF 585
Query: 67 ASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC 126
E LTFVG+VG+ DPPR EV +I+ CR AGIRV++ITGDNK TA AICR IG+F
Sbjct: 586 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 645
Query: 127 NEDISLKSLTGKEF--MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG 184
NE+++ ++ TG+EF + + +++ R++ F+R EP HK +IV L+ E+ AMTG
Sbjct: 646 NEEVADRAYTGREFDDLPLAEQREACRRA--CCFARVEPSHKSKIVEYLQSYDEITAMTG 703
Query: 185 DGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFI 244
DGVNDAPALK A+IGIAMG +GT VAK AS+MVLADD+FSTIV+AV EGR+IYNNMK FI
Sbjct: 704 DGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 762
Query: 245 RYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 304
RY+ISSN+GEV IF TAALG+PE LIPVQLLWVNLVTDG PATALGFNPPD DIM +PP
Sbjct: 763 RYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 822
Query: 305 RRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTN 364
R + LIS W+ FRY+ IG YVG ATVG W+ + DG VTY QLT+
Sbjct: 823 RSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAE--------DGPG-VTYHQLTH 873
Query: 365 WGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALS 424
+ QC T + F D C+ F + MT++LSVLV IEM N+LN+LS
Sbjct: 874 FMQC-----------TEDHPHFEGLD--CEIFEAP--EPMTMALSVLVTIEMCNALNSLS 918
Query: 425 EDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPV 484
E+ SL+ MPPWVN WLL ++ +S LHFLILYV L IF + L +WL+VL I+ PV
Sbjct: 919 ENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPV 978
Query: 485 VLIDEVLKFVGR 496
+ +DE+LKF+ R
Sbjct: 979 IGLDEILKFIAR 990
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/492 (52%), Positives = 326/492 (66%), Gaps = 41/492 (8%)
Query: 9 VPLDHKSRNLILDALHEMSTG--ALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNY 66
VP+ + IL + E TG LRCL A +D P E +L + S +
Sbjct: 535 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMVLDDSSRF 584
Query: 67 ASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC 126
E LTFVG+VG+ DPPR EV +I+ CR AGIRV++ITGDNK TA AICR IG+F
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 644
Query: 127 NEDISLKSLTGKEF--MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG 184
NE+++ ++ TG+EF + + +++ R++ F+R EP HK +IV L+ E+ AMTG
Sbjct: 645 NEEVADRAYTGREFDDLPLAEQREACRRA--CCFARVEPSHKSKIVEYLQSYDEITAMTG 702
Query: 185 DGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFI 244
DGVNDAPALK A+IGIAMG +GT VAK AS+MVLADD+FSTIV+AV EGR+IYNNMK FI
Sbjct: 703 DGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 761
Query: 245 RYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 304
RY+ISSN+GEV IF TAALG+PE LIPVQLLWVNLVTDG PATALGFNPPD DIM +PP
Sbjct: 762 RYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 821
Query: 305 RRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTN 364
R + LIS W+ FRY+ IG YVG ATVG W+ + DG VTY QLT+
Sbjct: 822 RSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAE--------DGPG-VTYHQLTH 872
Query: 365 WGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALS 424
+ QC T + F D C+ F + MT++LSVLV IEM N+LN+LS
Sbjct: 873 FMQC-----------TEDHPHFEGLD--CEIFEAP--EPMTMALSVLVTIEMCNALNSLS 917
Query: 425 EDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPV 484
E+ SL+ MPPWVN WLL ++ +S LHFLILYV L IF + L +WL+VL I+ PV
Sbjct: 918 ENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPV 977
Query: 485 VLIDEVLKFVGR 496
+ +DE+LKF+ R
Sbjct: 978 IGLDEILKFIAR 989
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/492 (52%), Positives = 326/492 (66%), Gaps = 41/492 (8%)
Query: 9 VPLDHKSRNLILDALHEMSTG--ALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNY 66
VP+ + IL + E TG LRCL A +D P E +L + S +
Sbjct: 535 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMVLDDSSRF 584
Query: 67 ASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC 126
E LTFVG+VG+ DPPR EV +I+ CR AGIRV++ITGDNK TA AICR IG+F
Sbjct: 585 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 644
Query: 127 NEDISLKSLTGKEF--MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG 184
NE+++ ++ TG+EF + + +++ R++ F+R EP HK +IV L+ E+ AMTG
Sbjct: 645 NEEVADRAYTGREFDDLPLAEQREACRRA--CCFARVEPSHKSKIVEYLQSYDEITAMTG 702
Query: 185 DGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFI 244
DGVNDAPALK A+IGIAMG +GT VAK AS+MVLADD+FSTIV+AV EGR+IYNNMK FI
Sbjct: 703 DGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 761
Query: 245 RYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 304
RY+ISSN+GEV IF TAALG+PE LIPVQLLWVNLVTDG PATALGFNPPD DIM +PP
Sbjct: 762 RYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 821
Query: 305 RRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTN 364
R + LIS W+ FRY+ IG YVG ATVG W+ + DG VTY QLT+
Sbjct: 822 RSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAE--------DGPG-VTYHQLTH 872
Query: 365 WGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALS 424
+ QC T + F D C+ F + MT++LSVLV IEM N+LN+LS
Sbjct: 873 FMQC-----------TEDHPHFEGLD--CEIFEAP--EPMTMALSVLVTIEMCNALNSLS 917
Query: 425 EDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPV 484
E+ SL+ MPPWVN WLL ++ +S LHFLILYV L IF + L +WL+VL I+ PV
Sbjct: 918 ENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPV 977
Query: 485 VLIDEVLKFVGR 496
+ +DE+LKF+ R
Sbjct: 978 IGLDEILKFIAR 989
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 453 bits (1165), Expect = e-127, Method: Compositional matrix adjust.
Identities = 258/492 (52%), Positives = 325/492 (66%), Gaps = 41/492 (8%)
Query: 9 VPLDHKSRNLILDALHEMSTG--ALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNY 66
VP+ + IL + E TG LRCL A +D P E +L + + +
Sbjct: 534 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE----------EMVLDDSTKF 583
Query: 67 ASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC 126
E LTFVG+VG+ DPPR EV +I+ CR AGIRV++ITGDNK TA AICR IG+F
Sbjct: 584 MEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGE 643
Query: 127 NEDISLKSLTGKEF--MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG 184
NED++ ++ TG+EF + + +++ R++ F+R EP HK +IV L+ E+ AMTG
Sbjct: 644 NEDVADRAYTGREFDDLPLAEQREACRRA--CCFARVEPTHKSKIVEYLQSFDEITAMTG 701
Query: 185 DGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFI 244
DGVNDAPALK A+IGIAMG +GT VAK AS+MVLADD+FSTIV+AV EGR+IYNNMK FI
Sbjct: 702 DGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFI 760
Query: 245 RYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 304
RY+ISSN+GEV IF TAALG+PE LIPVQLLWVNLVTDG PATALGFNPPD DIM +PP
Sbjct: 761 RYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPP 820
Query: 305 RRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTN 364
R + LIS W+ FRY+ IG YVG ATVG W+ + DG VTYSQLT+
Sbjct: 821 RTPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFLYAE--------DGPH-VTYSQLTH 871
Query: 365 WGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALS 424
+ +C SP F C+ F + MT++LSVLV IEM N+LN+LS
Sbjct: 872 FMKCSEH-----SP--------DFEGVDCEVFEAP--QPMTMALSVLVTIEMCNALNSLS 916
Query: 425 EDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPV 484
E+ SL+ MPPWVN WL+ ++ +S LHFLILYV L IF + L WL+VL I+ PV
Sbjct: 917 ENQSLVRMPPWVNIWLVGSIGLSMSLHFLILYVDPLPMIFKLQALDLYHWLMVLKISLPV 976
Query: 485 VLIDEVLKFVGR 496
+ +DE+LKFV R
Sbjct: 977 IGLDEILKFVAR 988
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 158/530 (29%), Positives = 249/530 (46%), Gaps = 66/530 (12%)
Query: 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHP-AHTLLL 61
L+ G +PLD + R A + R LGF + Y +D+P + +
Sbjct: 532 LIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFC--------QLYLSEKDYPPGYAFDV 583
Query: 62 NPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREI 121
N+ + GL+F GLV + DPPR V A+ CR AGIRV+++TGD+ TA+AI +
Sbjct: 584 EAMNFPT--SGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASV 641
Query: 122 GVF----ECNEDISLKSLTGKEFMEMHDKKA------------------HLRQSGGLLFS 159
G+ E EDI+ + + + D +A LR ++F+
Sbjct: 642 GIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFA 701
Query: 160 RAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLA 219
R P+ K IV + G +VA+TGDGVND+PALK ADIG+AMGIAG++ AK A+DM+L
Sbjct: 702 RTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILL 761
Query: 220 DDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVAS--IFFTAALGIPEGLIPVQLLW 277
DD+F++IV+ V +GR I++N+K I Y ++ NI E+ I+ T ++ +P G I + L+
Sbjct: 762 DDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITI--LF 819
Query: 278 VNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVF 335
+ L TD P+ +L + + DIM PR + D + + Y IG I + F
Sbjct: 820 IELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIG---AIQSFAGF 876
Query: 336 IIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFT-AGNQVFTFNDNPCD 394
++T + G + L G P W N + + Q +TF
Sbjct: 877 TDYFTAMAQEG------------WFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQR--- 921
Query: 395 YFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPP---WVNPWLLLAMSVSFGLH 451
+ T ++IEM + L L+ + N L++A+ +
Sbjct: 922 -----LYQQYTCYTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIG 976
Query: 452 FLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCTNGS 501
+ Y P + IF +P+ F WL+ + + + DE+ K RC GS
Sbjct: 977 CFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGS 1026
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 202/378 (53%), Gaps = 43/378 (11%)
Query: 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAY----KDELPDFETYDGNE-DHPAH 57
L+ G PLD + ++ +A E+ R LGF + ++ P+ +D ++ + P
Sbjct: 491 LIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD 550
Query: 58 TLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAI 117
L FVGL+ + DPPR V A+ CR+AGI+V+++TGD+ TA+AI
Sbjct: 551 NL--------------CFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI 596
Query: 118 CREIGVF----ECNEDISLK----------------SLTGKEFMEMHDKKAH--LRQSGG 155
+ +G+ E EDI+ + + G + +M ++ L+
Sbjct: 597 AKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTE 656
Query: 156 LLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASD 215
++F+R P+ K IV + G +VA+TGDGVND+PA K ADIG+AMGIAG++V+K+A+D
Sbjct: 657 IVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAAD 716
Query: 216 MVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQL 275
M+L DD+F++IV+ V EGR I++N+K I Y ++SNI E+ IP L V +
Sbjct: 717 MILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTI 776
Query: 276 LWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVG 333
L ++L TD PA +L + + DIMK+ PR ++D + I Y IG+ +
Sbjct: 777 LCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFF 836
Query: 334 VFIIWYTHGSFLGINLIG 351
+ + FL I+L+G
Sbjct: 837 TYFVILAENGFLPIHLLG 854
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 202/378 (53%), Gaps = 43/378 (11%)
Query: 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAY----KDELPDFETYDGNE-DHPAH 57
L+ G PLD + ++ +A E+ R LGF + ++ P+ +D ++ + P
Sbjct: 497 LIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLD 556
Query: 58 TLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAI 117
L FVGL+ + DPPR V A+ CR+AGI+V+++TGD+ TA+AI
Sbjct: 557 NL--------------CFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI 602
Query: 118 CREIGVF----ECNEDISLK----------------SLTGKEFMEMHDKKAH--LRQSGG 155
+ +G+ E EDI+ + + G + +M ++ L+
Sbjct: 603 AKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTE 662
Query: 156 LLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASD 215
++F+R P+ K IV + G +VA+TGDGVND+PA K ADIG+AMGIAG++V+K+A+D
Sbjct: 663 IVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAAD 722
Query: 216 MVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQL 275
M+L DD+F++IV+ V EGR I++N+K I Y ++SNI E+ IP L V +
Sbjct: 723 MILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTI 782
Query: 276 LWVNLVTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVG 333
L ++L TD PA +L + + DIMK+ PR ++D + I Y IG+ +
Sbjct: 783 LCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFF 842
Query: 334 VFIIWYTHGSFLGINLIG 351
+ + FL I+L+G
Sbjct: 843 TYFVILAENGFLPIHLLG 860
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 202/373 (54%), Gaps = 33/373 (8%)
Query: 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLN 62
LL+G+ PL + +A E+ R LGF + LP+ + Y NE +P +
Sbjct: 527 LLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHF-ALPE-DKY--NEGYPFDA---D 579
Query: 63 PSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG 122
N+ + + L FVGL+ + DPPR V A+ CR+AGI+V+++TGD+ TA+AI + +G
Sbjct: 580 EPNFPTTD--LCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG 637
Query: 123 VF----ECNEDISLKSLTGKEFMEMHDKKAHLRQSGGL------------------LFSR 160
+ E EDI+ + + D KA + L +F+R
Sbjct: 638 IISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFAR 697
Query: 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLAD 220
P+ K IV + G +VA+TGDGVND+PALK ADIG+AMGI+G++V+K+A+DM+L D
Sbjct: 698 TSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLD 757
Query: 221 DDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNL 280
D+F++IV+ V EGR I++N+K I Y ++SNI E+ +P L V +L ++L
Sbjct: 758 DNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDL 817
Query: 281 VTDGPPATALGFNPPDKDIMKKPPR--RSDDSLISAWILFRYLVIGLYVGIATVGVFIIW 338
TD PA +L + + DIMK+ PR ++D + I Y IG+ + + +
Sbjct: 818 GTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVI 877
Query: 339 YTHGSFLGINLIG 351
FL ++LIG
Sbjct: 878 LAENGFLPMDLIG 890
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 135/279 (48%), Gaps = 33/279 (11%)
Query: 75 FVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG----------VF 124
FVGL+ L DPPR++ + I G+ V +ITGD + R +G +
Sbjct: 479 FVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALL 538
Query: 125 ECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTG 184
++D +L S+ +E +E D F+ P HK EIV+ L+E +V MTG
Sbjct: 539 GTHKDANLASIPVEELIEKADG-----------FAGVFPEHKYEIVKKLQERKHIVGMTG 587
Query: 185 DGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFI 244
DGVNDAPALK ADIGIA+ A T+ A+ ASD+VL + S I+SAV R+I+ MK +
Sbjct: 588 DGVNDAPALKKADIGIAVADA-TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYT 646
Query: 245 RYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPP 304
Y +S I + F AL +L + ++ DG T KD +K P
Sbjct: 647 IYAVSITI-RIVFGFMLIALIWEFDFSAFMVLIIAILNDGTIMTI------SKDRVKPSP 699
Query: 305 RRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGS 343
+ DS I +V+G Y I TV F W H +
Sbjct: 700 --TPDSWKLKEIFATGVVLGGYQAIMTVIFF--WAAHKT 734
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 70 ECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV------ 123
E +G++ DPPR++ ++ + + + G+ + ++TGD A R++G+
Sbjct: 521 EGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYN 580
Query: 124 FECNEDISLKSLTGKE---FMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVV 180
E + G E F+E D F+ P+HK +V +L++ G +V
Sbjct: 581 AERLGLGGGGDMPGSEVYDFVEAADG-----------FAEVFPQHKYNVVEILQQRGYLV 629
Query: 181 AMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNM 240
AMTGDGVNDAP+LK AD GIA+ ++ A+ A+D+V I+ A+ R I++ M
Sbjct: 630 AMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRM 688
Query: 241 KAFIRYMISSNI 252
A++ Y I+ +I
Sbjct: 689 YAYVVYRIALSI 700
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 40/229 (17%)
Query: 24 HEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRD 83
H ++ G R + D P FE D A + M V L+ + D
Sbjct: 502 HHVAIGNARLMQEHGGDNAPLFEKADELRGKGASVMF--------MAVDGKTVALLVVED 553
Query: 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEM 143
P ++ + I + + +GI ++++TGD+K TAEA+ +G+ + +I
Sbjct: 554 PIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAEIM------------ 601
Query: 144 HDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203
P K IV LK+ G +VAM GDGVNDAPAL ADIGIAMG
Sbjct: 602 -------------------PEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMG 642
Query: 204 IAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNI 252
GT+VA E++ + L D I A S +N++ + + N+
Sbjct: 643 -TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNV 690
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 38/190 (20%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ + D + A+++ + GI+V +ITGDN +AEAI RE+ N D
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL-----NLD------- 497
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 498 -------------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 537
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVA 256
D+GIA+G +G++VA E+ D+VL DD +V+A+ R + +K I + + N+
Sbjct: 538 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV---- 592
Query: 257 SIFFTAALGI 266
I AA G+
Sbjct: 593 -ILIPAAAGL 601
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 38/190 (20%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ + D + A+++ + GI+V +ITGDN +AEAI RE+ N D
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL-----NLD------- 575
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 576 -------------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 615
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVA 256
D+GIA+G +G++VA E+ D+VL DD +V+A+ R + +K I + + N+
Sbjct: 616 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV---- 670
Query: 257 SIFFTAALGI 266
I AA G+
Sbjct: 671 -ILIPAAAGL 679
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 33/165 (20%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ + D + A+++ + GI+V +ITGDN +AEAI RE+ +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 203 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 243
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMK 241
D+GIA+G +G++VA E+ D+VL DD +V+A+ R + +K
Sbjct: 244 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 33/165 (20%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ + D + A+++ + GI+V +ITGDN +AEAI RE+ +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 203 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 243
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMK 241
D+GIA+G +G++VA E+ D+VL DD +V+A+ R + +K
Sbjct: 244 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 33/154 (21%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ + D + A+++ + GI+V ITGDN +AEAI RE+ +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL------------- 182
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
L+ + P K E V+ L+ EVVA GDG+NDAPAL A
Sbjct: 183 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 223
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230
D+GIA+G +G++VA E+ D+VL DD +V+A+
Sbjct: 224 DLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 256
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 33/165 (20%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ L D R E +AI +A GI+ M++TGDN+ A+ + E+G+ +
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDD----------- 185
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
F+ P K E V+ +++ V AM GDGVNDAPAL A
Sbjct: 186 --------------------YFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQA 224
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMK 241
D+GIA+G AGT+VA E +D+VL +D + + V R Y+ ++
Sbjct: 225 DVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 33/163 (20%)
Query: 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLT 136
G++ L D R E +AI +A GI+ M++TGDN+ A+ + E+G+ +
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDD----------- 185
Query: 137 GKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196
F+ P K E V+ +++ V AM GDGVNDAPAL A
Sbjct: 186 --------------------YFAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAPALAQA 224
Query: 197 DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNN 239
D+GIA+G AGT+VA E +D+VL +D + + V R Y+
Sbjct: 225 DVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSK 266
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 41/139 (29%)
Query: 92 AIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLR 151
A+++ + GI+V ITGDN +AEAI RE+ +
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAISRELNL---------------------------- 61
Query: 152 QSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAK 211
L+ + P K E V+ L+ EVVA GDG+NDAPAL AD+GIA+G
Sbjct: 62 ---DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-------- 109
Query: 212 EASDMVLADDDFSTIVSAV 230
+ D+VL DD +V+A+
Sbjct: 110 -SGDIVLIRDDLRDVVAAI 127
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 232 EGRSIYNNMKAFIRYMISSNIGEVASIFFTAA 263
EGR+IYNNMK FIRY+ISSN+GEV IF TAA
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 32
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEF 140
+ D PR + +E + G+++++++GD ++ + + +E+ + E
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY-------------- 178
Query: 141 MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200
+S P K I+ LK++G V M GDGVNDA AL LAD+ +
Sbjct: 179 -----------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 201 AMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYN 238
AMG G +++K +D++L +D T++ + + + N
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEF 140
+ D PR + +E + G+++++++GD ++ + + +E+ + E
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY-------------- 178
Query: 141 MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200
+S P K I+ LK++G V M GDGVNDA AL LAD+ +
Sbjct: 179 -----------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 201 AMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYN 238
AMG G +++K +D++L +D T++ + + + N
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEF 140
+ D PR + +E + G+++++++GD ++ + + +E+ + E
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQEY-------------- 178
Query: 141 MEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200
+S P K I+ LK++G V M GDGVNDA AL LAD+ +
Sbjct: 179 -----------------YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221
Query: 201 AMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYN 238
AMG G +++K +D++L +D T++ + + + N
Sbjct: 222 AMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSN 258
>pdb|2VOY|L Chain L, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 21
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 272 PVQLLWVNLVTDGPPATALGF 292
PVQLLWVNLVTDG PATALGF
Sbjct: 1 PVQLLWVNLVTDGLPATALGF 21
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 178 EVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDD 222
EV+A+ GDG ND +K A +G+AMG A V K A + L +D+
Sbjct: 215 EVIAI-GDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDE 258
>pdb|4B6J|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
pdb|4B6J|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From T.
Onnurineus
Length = 201
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 88 EVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKK 147
E + +E R G +V++I+G + E K L G EFM
Sbjct: 83 EARELVETLREKGFKVVLISGSFEEVLE---------------PFKEL-GDEFMANR--- 123
Query: 148 AHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203
+ + G R R K E ++ + DG ++AM GDG DA + AD+GIA+G
Sbjct: 124 -AIFEDGKFQGIRLRFRDKGEFLKRFR-DGFILAM-GDGYADAKMFERADMGIAVG 176
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 178 EVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDD 222
EV+A+ GDG ND +K A G+A G A V K A + L +D+
Sbjct: 215 EVIAI-GDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTNDE 258
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 168 EIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIV 227
EI+R E GDG ND L+ A IG+AMG A +V K A+D V A D I
Sbjct: 194 EIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGIS 252
Query: 228 SAV 230
A+
Sbjct: 253 KAM 255
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 168 EIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIV 227
EI+R E GDG ND L+ A IG+AMG A +V K A+D V A D I
Sbjct: 194 EIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGIS 252
Query: 228 SAV 230
A+
Sbjct: 253 KAM 255
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 184 GDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230
GDG ND P LK A IG+AMG A +E + +D V D S + A+
Sbjct: 217 GDGGNDIPMLKAAGIGVAMGNA-SEKVQSVADFVTDTVDNSGLYKAL 262
>pdb|2VOY|C Chain C, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 22
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 474 WLLVLAIAFPVVLIDEVLKFVG 495
WL+VL I+ PV+ +DE+LKF+
Sbjct: 1 WLMVLKISLPVIGLDEILKFIA 22
>pdb|4AP9|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|C Chain C, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
pdb|4AP9|D Chain D, Crystal Structure Of Phosphoserine Phosphatase From
T.Onnurineus In Complex With Ndsb-201
Length = 201
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
Query: 88 EVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG-VFECNEDISLKSLTGKEFMEMHDK 146
E + +E R G +V++I+G + E +E+G F N I
Sbjct: 83 EARELVETLREKGFKVVLISGSFEEVLEPF-KELGDEFXANRAIF--------------- 126
Query: 147 KAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203
+ G R R K E ++ + DG ++A GDG DA + AD GIA+G
Sbjct: 127 -----EDGKFQGIRLRFRDKGEFLKRFR-DGFILA-XGDGYADAKXFERADXGIAVG 176
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 19/88 (21%)
Query: 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAY----KDELPDFETYDGNE-DHPAH 57
LL G PLD + ++ +A E+ R LGF + ++ P+ +D +E + P
Sbjct: 140 LLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDEVNFPVD 199
Query: 58 TLLLNPSNYASMECGLTFVGLVGLRDPP 85
L FVGL+ + DPP
Sbjct: 200 N--------------LCFVGLISMIDPP 213
>pdb|2PQ0|A Chain A, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2PQ0|B Chain B, Crystal Structure Of Hyopthetical Protein (Gk_1056) From
Geobacillus Kaustophilus Hta426
pdb|2QYH|A Chain A, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|B Chain B, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|C Chain C, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
pdb|2QYH|D Chain D, Crystal Structure Of The Hypothetical Protein (gk1056)
From Geobacillus Kaustophilus Hta426
Length = 258
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 109 DNKNTAEAI--CREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP-RH 165
+NK+ +A+ CR E+ +++ F+ HD + +GG S+AE R
Sbjct: 139 ENKDIYQALLFCRA-----EEEEPYVRNYPEFRFVRWHDVSTDVLPAGG---SKAEGIRX 190
Query: 166 KQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMV 217
E + + K+D V GDG+ND L G+A G A EV K +D V
Sbjct: 191 XIEKLGIDKKD---VYAFGDGLNDIEXLSFVGTGVAXGNAHEEV-KRVADFV 238
>pdb|2FEA|A Chain A, Crystal Structure Of Mtnx Phosphatase From Bacillus
Subtilis At 2.00 A Resolution
pdb|2FEA|B Chain B, Crystal Structure Of Mtnx Phosphatase From Bacillus
Subtilis At 2.00 A Resolution
Length = 236
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 166 KQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFST 225
K ++ L E + + GD V D A KL+D+ A E +E + L DF
Sbjct: 152 KPSVIHELSEPNQYIIXIGDSVTDVEAAKLSDLCFARDYLLNE-CREQNLNHLPYQDFYE 210
Query: 226 IVSAVGEGRSIYNNMKAFIRYMISSNIGE 254
I R N+K ++ + N GE
Sbjct: 211 I-------RKEIENVKEVQEWLQNKNAGE 232
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 124 FECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMT 183
+E ED++L S F E+ +KA S G R + + L E A
Sbjct: 192 YEHAEDLTLVSSAEHNF-ELSSRKA----SKGQALKR--------LAKQLNIPLEETAAV 238
Query: 184 GDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDD 222
GD +ND L+ A G+A G A ++ A + L +D+
Sbjct: 239 GDSLNDKSXLEAAGKGVAXGNAREDIKSIADAVTLTNDE 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,700,703
Number of Sequences: 62578
Number of extensions: 670089
Number of successful extensions: 1653
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1569
Number of HSP's gapped (non-prelim): 62
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)