Query 010234
Match_columns 514
No_of_seqs 350 out of 2812
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 22:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0202 Ca2+ transporting ATPa 100.0 8E-80 1.7E-84 623.2 31.8 459 3-499 511-970 (972)
2 TIGR01116 ATPase-IIA1_Ca sarco 100.0 2.8E-65 6E-70 563.9 48.1 450 5-496 467-917 (917)
3 KOG0203 Na+/K+ ATPase, alpha s 100.0 6.5E-70 1.4E-74 550.0 10.0 475 2-506 517-1016(1019)
4 TIGR01523 ATPase-IID_K-Na pota 100.0 6.2E-65 1.3E-69 563.1 48.8 445 7-498 577-1048(1053)
5 TIGR01106 ATPase-IIC_X-K sodiu 100.0 7.1E-65 1.5E-69 564.2 48.2 472 4-505 497-993 (997)
6 KOG0204 Calcium transporting A 100.0 6.7E-66 1.5E-70 521.5 26.2 429 3-495 578-1006(1034)
7 TIGR01522 ATPase-IIA2_Ca golgi 100.0 3.8E-61 8.2E-66 530.0 47.6 406 5-497 477-882 (884)
8 TIGR01517 ATPase-IIB_Ca plasma 100.0 5.7E-61 1.2E-65 531.7 46.6 421 4-494 517-938 (941)
9 PRK15122 magnesium-transportin 100.0 3.6E-59 7.7E-64 511.7 46.0 415 4-501 485-901 (903)
10 COG0474 MgtA Cation transport 100.0 8.7E-60 1.9E-64 517.3 39.0 423 6-493 485-912 (917)
11 PRK10517 magnesium-transportin 100.0 1.3E-56 2.8E-61 490.8 44.0 412 4-503 487-902 (902)
12 TIGR01524 ATPase-IIIB_Mg magne 100.0 4.8E-56 1E-60 486.6 47.2 409 3-498 451-863 (867)
13 TIGR01657 P-ATPase-V P-type AT 100.0 5.7E-51 1.2E-55 456.0 35.2 394 14-471 598-1045(1054)
14 TIGR01652 ATPase-Plipid phosph 100.0 2.1E-50 4.5E-55 452.9 31.2 433 13-506 555-1055(1057)
15 PLN03190 aminophospholipid tra 100.0 1.2E-48 2.6E-53 434.6 34.0 324 12-338 649-1040(1178)
16 TIGR01647 ATPase-IIIA_H plasma 100.0 3.2E-45 6.9E-50 396.5 39.6 355 13-455 399-753 (755)
17 KOG0206 P-type ATPase [General 100.0 1.6E-49 3.4E-54 427.2 3.3 439 13-508 575-1087(1151)
18 KOG0208 Cation transport ATPas 100.0 1.1E-41 2.4E-46 350.5 21.9 418 15-498 648-1123(1140)
19 KOG0210 P-type ATPase [Inorgan 100.0 3.5E-42 7.6E-47 341.1 15.5 416 18-505 586-1048(1051)
20 PRK14010 potassium-transportin 100.0 1.1E-32 2.3E-37 289.7 20.0 181 19-264 409-589 (673)
21 KOG0209 P-type ATPase [Inorgan 100.0 3.2E-30 7E-35 260.9 33.4 423 14-500 617-1153(1160)
22 PRK01122 potassium-transportin 100.0 4.6E-30 1E-34 270.1 21.8 171 17-252 411-581 (679)
23 TIGR01497 kdpB K+-transporting 100.0 4.7E-28 1E-32 254.3 20.1 178 17-259 412-589 (675)
24 COG2217 ZntA Cation transport 100.0 2.5E-27 5.4E-32 249.4 22.1 158 71-260 524-681 (713)
25 KOG0207 Cation transport ATPas 99.9 1.6E-25 3.5E-30 231.6 21.6 206 19-290 691-899 (951)
26 KOG4383 Uncharacterized conser 99.9 6.8E-25 1.5E-29 217.8 16.6 487 3-513 711-1347(1354)
27 PRK11033 zntA zinc/cadmium/mer 99.9 3E-24 6.6E-29 232.4 22.8 174 18-258 535-708 (741)
28 KOG0205 Plasma membrane H+-tra 99.9 1.1E-24 2.4E-29 216.1 17.1 257 10-291 438-695 (942)
29 TIGR01494 ATPase_P-type ATPase 99.9 5.9E-24 1.3E-28 222.6 22.5 168 20-260 316-483 (499)
30 PF00689 Cation_ATPase_C: Cati 99.9 2.9E-24 6.2E-29 194.8 15.3 181 267-494 1-182 (182)
31 TIGR01525 ATPase-IB_hvy heavy 99.9 6.4E-23 1.4E-27 216.8 22.0 174 21-259 354-528 (556)
32 PRK10671 copA copper exporting 99.9 8E-23 1.7E-27 225.7 23.4 177 17-258 616-792 (834)
33 TIGR01512 ATPase-IB2_Cd heavy 99.9 3.9E-22 8.4E-27 209.6 20.2 160 69-259 347-507 (536)
34 TIGR01511 ATPase-IB1_Cu copper 99.9 1.5E-21 3.3E-26 205.8 21.5 157 69-258 390-546 (562)
35 COG2216 KdpB High-affinity K+ 99.9 3.5E-21 7.6E-26 187.2 14.9 137 71-239 434-570 (681)
36 PRK10513 sugar phosphate phosp 99.7 3.5E-16 7.6E-21 151.2 14.8 65 167-232 202-266 (270)
37 COG0561 Cof Predicted hydrolas 99.7 6.2E-16 1.3E-20 148.9 14.7 148 84-232 20-259 (264)
38 PRK10976 putative hydrolase; P 99.7 3.8E-16 8.3E-21 150.5 13.1 65 167-232 196-262 (266)
39 PRK15126 thiamin pyrimidine py 99.7 5.9E-16 1.3E-20 149.7 14.1 65 167-232 194-260 (272)
40 PLN02887 hydrolase family prot 99.7 4.8E-15 1E-19 154.5 19.1 65 167-232 513-577 (580)
41 PRK01158 phosphoglycolate phos 99.6 2.2E-15 4.8E-20 142.0 13.5 146 84-232 20-227 (230)
42 COG4087 Soluble P-type ATPase 99.6 5E-15 1.1E-19 118.5 11.7 127 72-230 18-146 (152)
43 PF00702 Hydrolase: haloacid d 99.6 5.2E-16 1.1E-20 144.6 6.8 97 72-197 115-215 (215)
44 PRK10530 pyridoxal phosphate ( 99.6 9.7E-15 2.1E-19 141.3 13.4 65 167-232 205-269 (272)
45 TIGR01487 SPP-like sucrose-pho 99.6 7.5E-15 1.6E-19 136.8 10.9 147 83-230 17-215 (215)
46 PF08282 Hydrolase_3: haloacid 99.6 2.3E-14 5E-19 136.8 14.3 63 167-230 192-254 (254)
47 TIGR01482 SPP-subfamily Sucros 99.6 1.4E-14 2.9E-19 136.2 12.4 148 83-231 14-222 (225)
48 PRK03669 mannosyl-3-phosphogly 99.6 5E-14 1.1E-18 135.9 14.6 66 167-232 193-266 (271)
49 TIGR01486 HAD-SF-IIB-MPGP mann 99.5 1.8E-13 3.9E-18 131.0 14.8 66 167-232 182-254 (256)
50 TIGR00099 Cof-subfamily Cof su 99.5 4.1E-13 9E-18 128.6 12.9 63 167-230 194-256 (256)
51 TIGR02726 phenyl_P_delta pheny 99.4 5.2E-13 1.1E-17 117.7 8.9 107 91-227 41-147 (169)
52 PRK00192 mannosyl-3-phosphogly 99.4 4.7E-12 1E-16 122.4 14.3 64 168-232 197-268 (273)
53 TIGR01670 YrbI-phosphatas 3-de 99.4 3.1E-12 6.8E-17 112.0 9.3 110 92-231 36-146 (154)
54 PRK11133 serB phosphoserine ph 99.4 3.8E-12 8.3E-17 124.3 10.8 134 83-231 180-316 (322)
55 TIGR02137 HSK-PSP phosphoserin 99.3 3.7E-11 7.9E-16 110.0 12.1 130 84-233 68-198 (203)
56 TIGR02471 sucr_syn_bact_C sucr 99.2 4.8E-11 1E-15 112.8 10.4 64 168-232 166-233 (236)
57 COG0560 SerB Phosphoserine pho 99.2 6.6E-11 1.4E-15 108.8 9.3 121 83-219 76-200 (212)
58 TIGR01485 SPP_plant-cyano sucr 99.2 1.7E-10 3.7E-15 109.9 12.1 150 82-232 19-245 (249)
59 COG1778 Low specificity phosph 99.2 8.4E-11 1.8E-15 98.0 7.8 118 85-238 38-163 (170)
60 PRK09484 3-deoxy-D-manno-octul 99.2 8.5E-11 1.8E-15 106.1 8.4 108 91-228 55-162 (183)
61 PLN02382 probable sucrose-phos 99.1 1.1E-09 2.5E-14 111.0 13.6 65 167-232 181-258 (413)
62 TIGR00338 serB phosphoserine p 99.1 5.1E-10 1.1E-14 104.5 9.1 131 84-229 85-218 (219)
63 TIGR02463 MPGP_rel mannosyl-3- 99.0 9.2E-09 2E-13 96.2 13.1 40 85-124 17-56 (221)
64 TIGR02461 osmo_MPG_phos mannos 98.9 9E-09 1.9E-13 96.1 12.1 43 82-124 13-55 (225)
65 PRK10187 trehalose-6-phosphate 98.9 3E-08 6.5E-13 95.0 12.7 140 84-230 36-240 (266)
66 COG0546 Gph Predicted phosphat 98.8 1.7E-08 3.7E-13 94.2 9.6 127 82-230 87-217 (220)
67 PRK13582 thrH phosphoserine ph 98.8 3.6E-08 7.9E-13 91.0 11.5 126 84-231 68-196 (205)
68 PRK14502 bifunctional mannosyl 98.8 7.2E-08 1.6E-12 100.8 14.3 47 77-123 425-472 (694)
69 PRK08238 hypothetical protein; 98.8 1.4E-06 3.1E-11 89.8 23.5 97 84-208 72-169 (479)
70 PTZ00174 phosphomannomutase; P 98.7 1.2E-07 2.6E-12 90.1 12.2 54 164-218 187-245 (247)
71 TIGR01491 HAD-SF-IB-PSPlk HAD- 98.7 4.7E-08 1E-12 89.9 8.9 117 84-215 80-200 (201)
72 TIGR01454 AHBA_synth_RP 3-amin 98.7 9.9E-08 2.1E-12 88.1 9.1 126 83-230 74-203 (205)
73 PRK09552 mtnX 2-hydroxy-3-keto 98.6 1.8E-07 3.8E-12 87.3 10.3 99 84-201 74-184 (219)
74 PRK13222 phosphoglycolate phos 98.6 2.4E-07 5.2E-12 86.9 10.3 128 83-232 92-223 (226)
75 TIGR03333 salvage_mtnX 2-hydro 98.6 3.8E-07 8.1E-12 84.8 11.3 110 83-203 69-182 (214)
76 KOG1615 Phosphoserine phosphat 98.6 1.8E-07 4E-12 81.0 7.6 122 84-216 88-213 (227)
77 PLN02770 haloacid dehalogenase 98.5 3.5E-07 7.5E-12 87.0 9.7 125 83-227 107-234 (248)
78 PRK12702 mannosyl-3-phosphogly 98.5 1.4E-06 2.9E-11 82.4 13.3 42 83-124 17-58 (302)
79 PRK13288 pyrophosphatase PpaX; 98.5 4.5E-07 9.7E-12 84.3 9.4 125 84-230 82-210 (214)
80 TIGR01484 HAD-SF-IIB HAD-super 98.5 7.3E-07 1.6E-11 82.2 10.6 39 84-122 17-55 (204)
81 cd01427 HAD_like Haloacid deha 98.5 2.5E-07 5.5E-12 78.8 6.6 114 80-197 20-133 (139)
82 TIGR01449 PGP_bact 2-phosphogl 98.5 3.4E-07 7.4E-12 85.0 7.9 116 84-219 85-204 (213)
83 PRK13223 phosphoglycolate phos 98.5 5.5E-07 1.2E-11 86.8 9.4 126 83-230 100-229 (272)
84 PF12710 HAD: haloacid dehalog 98.5 3E-07 6.6E-12 83.8 7.3 92 87-194 92-192 (192)
85 PLN02954 phosphoserine phospha 98.5 1.1E-06 2.3E-11 82.4 10.5 118 84-219 84-214 (224)
86 PRK10826 2-deoxyglucose-6-phos 98.5 4.9E-07 1.1E-11 84.5 8.2 99 83-201 91-189 (222)
87 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.5 5.7E-07 1.2E-11 82.8 8.2 105 82-203 85-197 (202)
88 TIGR01489 DKMTPPase-SF 2,3-dik 98.4 8.3E-07 1.8E-11 80.6 9.0 111 83-201 71-186 (188)
89 PRK13226 phosphoglycolate phos 98.4 7.7E-07 1.7E-11 83.6 9.0 117 83-219 94-215 (229)
90 PRK13225 phosphoglycolate phos 98.4 2.4E-06 5.3E-11 82.1 10.8 122 84-230 142-267 (273)
91 PF05116 S6PP: Sucrose-6F-phos 98.3 2.4E-06 5.2E-11 81.0 9.8 72 161-232 161-244 (247)
92 TIGR01488 HAD-SF-IB Haloacid D 98.3 1.1E-06 2.4E-11 79.0 7.1 99 84-196 73-177 (177)
93 TIGR01422 phosphonatase phosph 98.3 1.7E-06 3.7E-11 82.7 8.7 100 84-203 99-203 (253)
94 PLN03243 haloacid dehalogenase 98.3 2.5E-06 5.4E-11 81.4 8.0 117 84-220 109-226 (260)
95 TIGR01544 HAD-SF-IE haloacid d 98.3 9.2E-06 2E-10 77.0 11.6 134 83-230 120-273 (277)
96 PRK13478 phosphonoacetaldehyde 98.3 4.3E-06 9.4E-11 80.5 9.6 101 84-203 101-205 (267)
97 PRK14501 putative bifunctional 98.2 1.2E-05 2.5E-10 88.5 13.8 141 84-231 514-721 (726)
98 PRK11590 hypothetical protein; 98.2 7.5E-06 1.6E-10 75.8 9.4 106 84-203 95-202 (211)
99 TIGR03351 PhnX-like phosphonat 98.2 6.1E-06 1.3E-10 77.0 8.1 98 83-200 86-186 (220)
100 TIGR01545 YfhB_g-proteo haloac 98.2 1E-05 2.2E-10 74.7 9.3 106 84-203 94-201 (210)
101 PRK11587 putative phosphatase; 98.2 7.9E-06 1.7E-10 76.2 8.6 116 84-220 83-199 (218)
102 PLN02575 haloacid dehalogenase 98.1 1.2E-05 2.7E-10 79.8 9.3 117 84-220 216-333 (381)
103 PLN02779 haloacid dehalogenase 98.1 9.5E-06 2.1E-10 78.7 8.1 120 84-222 144-266 (286)
104 PRK08942 D,D-heptose 1,7-bisph 98.1 1.5E-05 3.2E-10 72.0 8.7 99 84-199 29-142 (181)
105 TIGR01662 HAD-SF-IIIA HAD-supe 98.1 1.1E-05 2.3E-10 68.7 6.9 93 84-200 25-127 (132)
106 TIGR01548 HAD-SF-IA-hyp1 haloa 98.0 1.3E-05 2.8E-10 73.4 7.6 93 83-196 105-197 (197)
107 TIGR01428 HAD_type_II 2-haloal 98.0 1.8E-05 3.9E-10 72.5 8.3 98 84-201 92-189 (198)
108 TIGR02253 CTE7 HAD superfamily 98.0 1.3E-05 2.9E-10 74.8 7.4 96 84-199 94-190 (221)
109 PHA02530 pseT polynucleotide k 98.0 1.4E-05 3E-10 78.4 7.6 106 82-200 185-292 (300)
110 PRK11009 aphA acid phosphatase 98.0 3.8E-05 8.2E-10 71.7 8.9 85 83-198 113-205 (237)
111 PRK14988 GMP/IMP nucleotidase; 97.9 1.9E-05 4.1E-10 73.8 7.0 98 83-200 92-189 (224)
112 PRK06769 hypothetical protein; 97.9 2.8E-05 6E-10 69.5 7.4 96 85-199 29-132 (173)
113 TIGR02009 PGMB-YQAB-SF beta-ph 97.9 2E-05 4.4E-10 71.2 6.6 96 83-200 87-182 (185)
114 TIGR01672 AphA HAD superfamily 97.9 3.2E-05 7E-10 72.2 7.6 95 84-205 114-215 (237)
115 PLN02940 riboflavin kinase 97.9 2.5E-05 5.5E-10 78.9 7.3 96 84-199 93-189 (382)
116 TIGR01685 MDP-1 magnesium-depe 97.9 5.8E-05 1.3E-09 66.9 8.5 114 72-202 33-155 (174)
117 TIGR01990 bPGM beta-phosphoglu 97.9 2.5E-05 5.3E-10 70.7 6.3 94 84-199 87-180 (185)
118 PRK06698 bifunctional 5'-methy 97.9 5.2E-05 1.1E-09 78.9 9.2 123 84-232 330-455 (459)
119 TIGR00213 GmhB_yaeD D,D-heptos 97.9 4.7E-05 1E-09 68.3 7.8 105 85-200 27-146 (176)
120 TIGR00685 T6PP trehalose-phosp 97.9 6.6E-05 1.4E-09 71.2 9.0 66 160-230 162-239 (244)
121 PF13419 HAD_2: Haloacid dehal 97.9 2.6E-05 5.6E-10 69.5 5.8 99 82-200 75-173 (176)
122 TIGR01509 HAD-SF-IA-v3 haloaci 97.8 5.7E-05 1.2E-09 68.1 8.0 95 84-199 85-179 (183)
123 TIGR01261 hisB_Nterm histidino 97.8 3.2E-05 6.9E-10 68.0 5.5 100 84-201 29-144 (161)
124 TIGR01656 Histidinol-ppas hist 97.8 4.8E-05 1E-09 66.0 6.3 101 84-201 27-142 (147)
125 PLN02423 phosphomannomutase 97.8 0.00026 5.7E-09 67.0 11.8 43 164-208 188-235 (245)
126 TIGR01668 YqeG_hyp_ppase HAD s 97.8 6.1E-05 1.3E-09 67.1 6.8 87 84-199 43-131 (170)
127 TIGR02252 DREG-2 REG-2-like, H 97.8 6.9E-05 1.5E-09 68.9 7.1 95 84-199 105-200 (203)
128 PLN02811 hydrolase 97.7 0.0001 2.3E-09 68.7 8.1 99 83-199 77-179 (220)
129 TIGR01691 enolase-ppase 2,3-di 97.7 0.00011 2.4E-09 68.0 7.9 99 81-201 92-193 (220)
130 smart00775 LNS2 LNS2 domain. T 97.7 0.00026 5.5E-09 62.0 9.5 106 82-199 25-141 (157)
131 COG3769 Predicted hydrolase (H 97.7 0.00037 8E-09 62.1 10.3 38 87-124 26-63 (274)
132 COG4359 Uncharacterized conser 97.7 0.00031 6.7E-09 60.7 9.1 109 84-201 73-183 (220)
133 PRK10444 UMP phosphatase; Prov 97.6 0.00037 8E-09 66.0 10.5 47 77-123 10-59 (248)
134 PLN02919 haloacid dehalogenase 97.6 0.00018 3.9E-09 81.9 9.5 135 84-238 161-299 (1057)
135 TIGR01549 HAD-SF-IA-v1 haloaci 97.6 0.00015 3.3E-09 63.4 7.1 93 82-197 62-154 (154)
136 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.6 0.0006 1.3E-08 64.8 11.4 49 77-125 10-61 (249)
137 TIGR02254 YjjG/YfnB HAD superf 97.6 0.00019 4E-09 67.1 7.6 95 84-199 97-193 (224)
138 PLN02205 alpha,alpha-trehalose 97.6 0.00044 9.5E-09 76.5 10.9 38 83-120 615-653 (854)
139 TIGR01681 HAD-SF-IIIC HAD-supe 97.6 0.00018 4E-09 60.7 6.2 88 84-195 29-126 (128)
140 PRK09449 dUMP phosphatase; Pro 97.5 0.00031 6.7E-09 65.7 8.1 96 84-200 95-192 (224)
141 TIGR01664 DNA-3'-Pase DNA 3'-p 97.5 0.00022 4.8E-09 63.1 6.5 94 85-200 43-158 (166)
142 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.5 0.00074 1.6E-08 64.5 10.4 48 77-124 10-64 (257)
143 smart00577 CPDc catalytic doma 97.4 0.00014 3.1E-09 63.1 4.3 95 84-201 45-139 (148)
144 COG2179 Predicted hydrolase of 97.4 0.00049 1.1E-08 58.9 7.1 86 84-198 46-132 (175)
145 PLN02580 trehalose-phosphatase 97.4 0.0013 2.9E-08 65.4 11.0 37 85-122 142-178 (384)
146 PRK09456 ?-D-glucose-1-phospha 97.3 0.00055 1.2E-08 62.7 7.2 97 84-200 84-181 (199)
147 TIGR02247 HAD-1A3-hyp Epoxide 97.3 0.00028 6.2E-09 65.2 5.0 98 83-200 93-192 (211)
148 TIGR01533 lipo_e_P4 5'-nucleot 97.2 0.0016 3.5E-08 61.8 9.0 86 82-193 116-204 (266)
149 TIGR01686 FkbH FkbH-like domai 97.2 0.00089 1.9E-08 66.2 7.6 94 85-203 32-129 (320)
150 PRK05446 imidazole glycerol-ph 97.2 0.00065 1.4E-08 67.2 6.4 101 84-201 30-145 (354)
151 TIGR01993 Pyr-5-nucltdase pyri 97.2 0.00091 2E-08 60.4 6.9 98 84-200 84-181 (184)
152 COG4030 Uncharacterized protei 97.2 0.0012 2.7E-08 59.0 6.8 147 84-231 83-262 (315)
153 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.1 0.0019 4.1E-08 61.1 8.3 97 77-198 17-116 (242)
154 PF06888 Put_Phosphatase: Puta 97.1 0.0011 2.3E-08 61.7 6.0 120 84-208 71-201 (234)
155 PRK10563 6-phosphogluconate ph 97.1 0.00097 2.1E-08 62.2 5.8 98 83-202 87-184 (221)
156 PRK10725 fructose-1-P/6-phosph 97.0 0.0016 3.4E-08 59.0 6.9 94 85-200 89-182 (188)
157 KOG3040 Predicted sugar phosph 97.0 0.0047 1E-07 54.7 8.8 51 73-123 12-65 (262)
158 TIGR01452 PGP_euk phosphoglyco 97.0 0.0053 1.1E-07 59.5 10.2 48 77-124 11-61 (279)
159 TIGR01675 plant-AP plant acid 97.0 0.0055 1.2E-07 56.6 9.5 81 82-190 118-209 (229)
160 COG0637 Predicted phosphatase/ 96.9 0.0019 4.2E-08 60.1 6.4 98 83-200 85-182 (221)
161 PHA02597 30.2 hypothetical pro 96.9 0.0022 4.7E-08 58.6 6.1 95 84-200 74-170 (197)
162 PLN03017 trehalose-phosphatase 96.8 0.021 4.6E-07 56.5 12.7 35 84-119 133-167 (366)
163 KOG3120 Predicted haloacid deh 96.8 0.0077 1.7E-07 54.0 8.6 120 84-209 84-215 (256)
164 PRK10748 flavin mononucleotide 96.6 0.005 1.1E-07 58.1 6.6 94 84-203 113-207 (238)
165 PF09419 PGP_phosphatase: Mito 96.5 0.014 3E-07 51.2 8.5 89 83-201 58-162 (168)
166 COG1011 Predicted hydrolase (H 96.5 0.01 2.3E-07 55.4 7.9 97 82-199 97-194 (229)
167 COG0647 NagD Predicted sugar p 96.4 0.022 4.8E-07 54.1 9.7 46 75-120 15-60 (269)
168 PLN02645 phosphoglycolate phos 96.3 0.0098 2.1E-07 58.5 6.8 98 77-203 37-137 (311)
169 COG0241 HisB Histidinol phosph 95.8 0.046 1E-06 48.5 8.2 97 85-199 32-144 (181)
170 PF13344 Hydrolase_6: Haloacid 95.8 0.016 3.4E-07 46.6 4.8 49 77-125 7-58 (101)
171 PF13242 Hydrolase_like: HAD-h 95.5 0.0084 1.8E-07 45.2 2.1 61 160-220 4-71 (75)
172 TIGR01663 PNK-3'Pase polynucle 95.3 0.03 6.5E-07 58.6 5.7 90 85-196 198-303 (526)
173 PF08235 LNS2: LNS2 (Lipin/Ned 95.2 0.11 2.4E-06 44.9 8.0 109 76-199 20-141 (157)
174 TIGR01493 HAD-SF-IA-v2 Haloaci 95.0 0.033 7.2E-07 49.6 4.7 86 84-196 90-175 (175)
175 PF03767 Acid_phosphat_B: HAD 95.0 0.049 1.1E-06 50.9 5.8 82 84-192 115-207 (229)
176 PF02358 Trehalose_PPase: Treh 94.9 0.18 3.8E-06 47.5 9.6 66 155-220 155-233 (235)
177 PLN02151 trehalose-phosphatase 94.7 0.5 1.1E-05 46.8 12.3 36 84-120 120-155 (354)
178 KOG3085 Predicted hydrolase (H 94.4 0.079 1.7E-06 49.1 5.5 101 82-203 111-213 (237)
179 PLN02177 glycerol-3-phosphate 94.3 0.46 9.9E-06 49.7 11.5 97 85-204 111-215 (497)
180 TIGR01680 Veg_Stor_Prot vegeta 94.1 0.29 6.2E-06 46.3 8.6 32 82-113 143-174 (275)
181 TIGR02244 HAD-IG-Ncltidse HAD 94.1 0.087 1.9E-06 52.0 5.4 111 85-198 185-317 (343)
182 KOG2882 p-Nitrophenyl phosphat 94.0 0.54 1.2E-05 44.7 10.1 49 76-124 30-81 (306)
183 TIGR01460 HAD-SF-IIA Haloacid 93.9 0.32 7E-06 45.7 8.9 47 77-123 7-57 (236)
184 TIGR02251 HIF-SF_euk Dullard-l 93.3 0.057 1.2E-06 47.5 2.5 97 81-200 39-135 (162)
185 TIGR01459 HAD-SF-IIA-hyp4 HAD- 93.1 0.13 2.7E-06 48.7 4.7 96 86-200 140-237 (242)
186 TIGR01684 viral_ppase viral ph 93.0 0.24 5.2E-06 47.3 6.2 42 86-127 148-189 (301)
187 PF05822 UMPH-1: Pyrimidine 5' 92.6 0.38 8.3E-06 44.8 6.8 133 84-230 90-241 (246)
188 KOG3109 Haloacid dehalogenase- 92.3 1.1 2.4E-05 40.6 9.0 99 85-199 101-200 (244)
189 TIGR01689 EcbF-BcbF capsule bi 92.1 0.2 4.4E-06 41.8 4.0 33 83-115 23-55 (126)
190 COG3700 AphA Acid phosphatase 92.1 0.32 7E-06 42.2 5.2 85 85-200 115-208 (237)
191 PHA03398 viral phosphatase sup 91.6 0.47 1E-05 45.4 6.3 41 86-126 150-190 (303)
192 COG1877 OtsB Trehalose-6-phosp 91.4 2.5 5.3E-05 40.3 11.0 122 82-203 38-228 (266)
193 PTZ00445 p36-lilke protein; Pr 90.6 1.9 4.1E-05 39.2 8.8 151 15-198 27-199 (219)
194 PF12689 Acid_PPase: Acid Phos 88.5 0.83 1.8E-05 40.3 4.9 42 83-124 44-86 (169)
195 COG2503 Predicted secreted aci 88.2 3.1 6.7E-05 38.4 8.4 86 84-195 122-211 (274)
196 KOG2914 Predicted haloacid-hal 87.8 1.4 3.1E-05 40.7 6.2 101 84-202 92-194 (222)
197 PLN03063 alpha,alpha-trehalose 85.6 16 0.00034 41.0 14.0 38 85-122 533-571 (797)
198 PLN02645 phosphoglycolate phos 84.0 1.6 3.5E-05 42.9 4.9 41 158-198 228-269 (311)
199 PF14336 DUF4392: Domain of un 83.0 6 0.00013 38.4 8.3 38 86-123 62-100 (291)
200 PF11019 DUF2608: Protein of u 78.3 6.1 0.00013 37.5 6.4 108 84-196 81-197 (252)
201 COG4229 Predicted enolase-phos 75.8 8.6 0.00019 33.9 6.0 99 81-198 100-198 (229)
202 PF05761 5_nucleotid: 5' nucle 73.0 5.8 0.00013 40.9 5.1 107 86-196 185-315 (448)
203 TIGR01456 CECR5 HAD-superfamil 70.2 18 0.0004 35.6 7.8 49 76-124 8-64 (321)
204 PRK14194 bifunctional 5,10-met 69.5 24 0.00051 34.3 8.1 64 157-220 137-209 (301)
205 KOG3128 Uncharacterized conser 69.1 13 0.00028 34.7 5.8 139 85-228 139-288 (298)
206 PF00389 2-Hacid_dh: D-isomer 68.6 33 0.00072 28.6 8.1 83 83-203 5-89 (133)
207 PF13380 CoA_binding_2: CoA bi 65.0 27 0.00059 28.5 6.6 40 85-124 64-104 (116)
208 TIGR02250 FCP1_euk FCP1-like p 64.6 9.3 0.0002 33.2 4.0 42 82-124 56-97 (156)
209 TIGR00216 ispH_lytB (E)-4-hydr 64.5 1.2E+02 0.0025 29.3 11.6 155 18-207 101-266 (280)
210 PRK01045 ispH 4-hydroxy-3-meth 64.4 87 0.0019 30.5 10.8 154 18-205 101-266 (298)
211 PRK14166 bifunctional 5,10-met 61.3 1.2E+02 0.0026 29.2 11.1 63 157-219 135-206 (282)
212 PRK14170 bifunctional 5,10-met 59.3 55 0.0012 31.5 8.4 62 158-219 136-206 (284)
213 PRK14189 bifunctional 5,10-met 58.8 1.1E+02 0.0023 29.6 10.3 65 156-220 135-208 (285)
214 PLN03064 alpha,alpha-trehalose 58.7 1.1E+02 0.0024 34.9 11.9 39 84-122 622-661 (934)
215 PRK14169 bifunctional 5,10-met 57.9 48 0.001 31.9 7.8 63 157-219 134-205 (282)
216 cd02067 B12-binding B12 bindin 57.7 12 0.00026 30.7 3.3 56 70-125 48-105 (119)
217 PRK14174 bifunctional 5,10-met 57.3 1.2E+02 0.0026 29.4 10.5 64 157-220 137-213 (295)
218 PRK12360 4-hydroxy-3-methylbut 55.4 1.5E+02 0.0034 28.5 10.7 153 18-205 104-265 (281)
219 PRK14182 bifunctional 5,10-met 55.0 1.2E+02 0.0027 29.1 10.0 62 158-219 136-206 (282)
220 PRK14191 bifunctional 5,10-met 54.8 1.6E+02 0.0035 28.4 10.7 63 157-219 135-206 (285)
221 PRK14180 bifunctional 5,10-met 54.2 2.1E+02 0.0046 27.6 12.8 177 1-219 1-207 (282)
222 PF06506 PrpR_N: Propionate ca 54.1 52 0.0011 29.1 7.1 108 87-242 64-172 (176)
223 cd05017 SIS_PGI_PMI_1 The memb 53.4 47 0.001 27.1 6.3 38 83-122 53-90 (119)
224 COG0279 GmhA Phosphoheptose is 53.0 29 0.00062 30.3 4.8 45 72-118 110-154 (176)
225 PRK14172 bifunctional 5,10-met 52.9 1.5E+02 0.0034 28.4 10.3 63 157-219 136-207 (278)
226 COG0761 lytB 4-Hydroxy-3-methy 51.5 1.8E+02 0.0039 27.9 10.2 155 18-208 102-271 (294)
227 PRK14190 bifunctional 5,10-met 51.1 66 0.0014 31.0 7.5 63 157-219 136-207 (284)
228 PRK14179 bifunctional 5,10-met 50.9 2.4E+02 0.0052 27.3 11.5 63 157-219 136-207 (284)
229 PRK14167 bifunctional 5,10-met 50.3 68 0.0015 31.2 7.5 63 157-219 135-210 (297)
230 PRK14186 bifunctional 5,10-met 49.0 73 0.0016 30.9 7.5 62 158-219 137-207 (297)
231 PRK14193 bifunctional 5,10-met 48.3 78 0.0017 30.5 7.5 62 158-219 137-209 (284)
232 PF06941 NT5C: 5' nucleotidase 47.1 13 0.00029 33.4 2.1 29 84-112 73-101 (191)
233 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.2 34 0.00074 28.0 4.4 35 84-118 57-91 (126)
234 PRK14183 bifunctional 5,10-met 45.8 2.6E+02 0.0056 27.0 10.6 63 157-219 135-206 (281)
235 cd02071 MM_CoA_mut_B12_BD meth 45.5 49 0.0011 27.2 5.2 82 25-125 22-105 (122)
236 PRK02261 methylaspartate mutas 45.5 61 0.0013 27.4 5.8 82 24-124 25-114 (137)
237 PRK14175 bifunctional 5,10-met 45.1 65 0.0014 31.1 6.5 63 157-219 136-207 (286)
238 PF02254 TrkA_N: TrkA-N domain 44.7 1.4E+02 0.0029 23.9 7.7 104 87-201 8-113 (116)
239 cd05014 SIS_Kpsf KpsF-like pro 44.5 31 0.00067 28.4 3.9 36 84-119 58-93 (128)
240 COG0190 FolD 5,10-methylene-te 43.6 3.1E+02 0.0067 26.4 11.9 64 156-219 133-205 (283)
241 COG4996 Predicted phosphatase 43.4 1.1E+02 0.0025 25.5 6.6 46 81-126 38-83 (164)
242 PF04273 DUF442: Putative phos 42.8 57 0.0012 26.5 4.9 39 90-128 17-63 (110)
243 cd05710 SIS_1 A subgroup of th 42.1 41 0.00089 27.6 4.1 35 84-118 58-92 (120)
244 cd05013 SIS_RpiR RpiR-like pro 41.0 1.7E+02 0.0036 24.0 8.0 108 88-202 2-111 (139)
245 PRK11557 putative DNA-binding 40.9 2.2E+02 0.0047 27.2 9.6 110 87-203 116-227 (278)
246 COG1916 Uncharacterized homolo 40.9 2.5E+02 0.0054 28.0 9.6 40 84-123 96-135 (388)
247 PRK10792 bifunctional 5,10-met 40.9 2.6E+02 0.0057 27.0 9.8 63 157-219 137-208 (285)
248 cd00860 ThrRS_anticodon ThrRS 40.2 75 0.0016 24.0 5.2 46 79-124 7-53 (91)
249 PF08645 PNK3P: Polynucleotide 39.4 24 0.00052 30.7 2.5 25 85-109 30-54 (159)
250 PRK13938 phosphoheptose isomer 38.7 67 0.0014 29.1 5.3 32 85-116 125-156 (196)
251 PRK14187 bifunctional 5,10-met 37.6 2.6E+02 0.0057 27.1 9.3 63 157-219 138-209 (294)
252 KOG2630 Enolase-phosphatase E- 37.1 1.9E+02 0.0041 26.9 7.7 97 84-199 123-219 (254)
253 cd05013 SIS_RpiR RpiR-like pro 36.6 60 0.0013 26.7 4.5 32 86-117 73-104 (139)
254 TIGR03127 RuMP_HxlB 6-phospho 36.6 52 0.0011 29.1 4.2 36 84-119 83-118 (179)
255 PF01380 SIS: SIS domain SIS d 36.4 99 0.0022 25.2 5.8 37 82-118 62-98 (131)
256 PF05240 APOBEC_C: APOBEC-like 36.2 47 0.001 23.1 2.9 23 87-109 2-24 (55)
257 PRK15424 propionate catabolism 35.9 4.8E+02 0.01 27.9 11.8 42 155-198 133-174 (538)
258 PRK14177 bifunctional 5,10-met 35.8 4.1E+02 0.009 25.6 12.5 63 157-219 137-208 (284)
259 PRK14185 bifunctional 5,10-met 35.5 4.2E+02 0.009 25.7 10.3 63 157-219 135-210 (293)
260 PF02401 LYTB: LytB protein; 35.2 49 0.0011 31.9 4.0 47 160-207 218-266 (281)
261 KOG1618 Predicted phosphatase 35.1 2.1E+02 0.0045 28.1 7.9 52 73-124 40-99 (389)
262 PLN02897 tetrahydrofolate dehy 34.4 2.1E+02 0.0045 28.4 8.2 64 156-219 191-263 (345)
263 PF00875 DNA_photolyase: DNA p 34.3 3E+02 0.0065 23.8 8.7 38 87-124 53-90 (165)
264 COG0731 Fe-S oxidoreductases [ 34.1 2.4E+02 0.0052 27.4 8.4 32 83-114 91-123 (296)
265 PRK14176 bifunctional 5,10-met 34.1 4.4E+02 0.0096 25.5 11.7 63 157-219 142-213 (287)
266 COG3981 Predicted acetyltransf 33.3 74 0.0016 28.0 4.3 99 12-110 10-140 (174)
267 PF02593 dTMP_synthase: Thymid 32.7 1.1E+02 0.0024 28.2 5.6 89 86-201 61-158 (217)
268 cd05006 SIS_GmhA Phosphoheptos 32.4 60 0.0013 28.6 4.0 44 76-119 104-147 (177)
269 PRK14184 bifunctional 5,10-met 32.3 4.7E+02 0.01 25.3 11.3 32 157-188 135-168 (286)
270 PRK14188 bifunctional 5,10-met 32.3 4.8E+02 0.01 25.4 13.6 65 156-220 135-208 (296)
271 TIGR03127 RuMP_HxlB 6-phospho 32.3 3.1E+02 0.0067 24.0 8.6 105 87-203 18-124 (179)
272 PRK14171 bifunctional 5,10-met 32.2 4.8E+02 0.01 25.3 11.9 64 156-219 136-208 (288)
273 TIGR00640 acid_CoA_mut_C methy 32.0 1.1E+02 0.0023 25.8 5.1 82 25-125 25-108 (132)
274 PRK13937 phosphoheptose isomer 31.9 68 0.0015 28.8 4.2 34 85-118 118-151 (188)
275 PRK00414 gmhA phosphoheptose i 31.2 1.3E+02 0.0027 27.2 5.8 32 85-116 123-154 (192)
276 KOG2470 Similar to IMP-GMP spe 30.9 1.1E+02 0.0024 30.1 5.5 28 87-114 243-270 (510)
277 KOG0208 Cation transport ATPas 30.8 1.2E+02 0.0026 34.4 6.3 100 82-200 645-752 (1140)
278 COG0309 HypE Hydrogenase matur 30.7 3.3E+02 0.0071 26.9 8.7 85 78-185 219-307 (339)
279 cd01017 AdcA Metal binding pro 30.5 1.4E+02 0.003 28.7 6.4 53 71-123 188-244 (282)
280 cd04906 ACT_ThrD-I_1 First of 30.4 65 0.0014 24.5 3.3 33 78-110 43-76 (85)
281 cd04795 SIS SIS domain. SIS (S 29.8 1E+02 0.0023 22.9 4.5 22 86-107 60-81 (87)
282 PF03332 PMM: Eukaryotic phosp 29.7 34 0.00073 31.5 1.8 45 164-209 161-211 (220)
283 cd01137 PsaA Metal binding pro 29.6 1.5E+02 0.0032 28.7 6.4 54 71-124 194-251 (287)
284 PF03129 HGTP_anticodon: Antic 29.6 1.1E+02 0.0025 23.3 4.7 47 78-124 4-54 (94)
285 TIGR01456 CECR5 HAD-superfamil 29.5 54 0.0012 32.3 3.4 48 156-203 229-291 (321)
286 TIGR03820 lys_2_3_AblA lysine- 29.5 94 0.002 31.8 5.1 39 83-121 228-272 (417)
287 cd02070 corrinoid_protein_B12- 28.5 34 0.00075 31.1 1.7 54 70-125 131-187 (201)
288 cd05005 SIS_PHI Hexulose-6-pho 28.3 80 0.0017 27.9 4.0 36 84-119 86-121 (179)
289 PRK00087 4-hydroxy-3-methylbut 28.1 5.2E+02 0.011 28.3 10.9 155 18-207 101-264 (647)
290 cd01019 ZnuA Zinc binding prot 28.1 1.6E+02 0.0036 28.3 6.4 53 71-123 196-252 (286)
291 TIGR00441 gmhA phosphoheptose 28.0 83 0.0018 27.1 3.9 44 76-119 82-125 (154)
292 PF05297 Herpes_LMP1: Herpesvi 27.8 20 0.00043 33.9 0.0 6 473-478 171-176 (381)
293 PRK15482 transcriptional regul 27.8 5.3E+02 0.011 24.6 10.0 110 87-203 123-234 (285)
294 COG1171 IlvA Threonine dehydra 27.7 1.7E+02 0.0038 29.0 6.4 73 89-193 60-136 (347)
295 KOG0209 P-type ATPase [Inorgan 27.5 3.4E+02 0.0073 30.4 8.8 46 70-118 492-549 (1160)
296 cd04728 ThiG Thiazole synthase 27.5 5.3E+02 0.011 24.3 10.0 100 21-120 24-143 (248)
297 COG1832 Predicted CoA-binding 27.2 1.1E+02 0.0024 25.9 4.2 41 68-108 11-51 (140)
298 TIGR01501 MthylAspMutase methy 27.0 2.1E+02 0.0045 24.2 6.0 82 24-124 23-112 (134)
299 PF03031 NIF: NLI interacting 26.6 70 0.0015 27.5 3.3 38 85-123 37-74 (159)
300 TIGR00238 KamA family protein. 26.6 56 0.0012 32.4 2.9 32 75-106 225-256 (331)
301 cd00859 HisRS_anticodon HisRS 26.5 1.5E+02 0.0032 22.0 4.9 44 80-123 8-52 (91)
302 PF08821 CGGC: CGGC domain; I 26.3 2.3E+02 0.0049 22.9 5.8 44 65-108 29-73 (107)
303 TIGR00129 fdhD_narQ formate de 26.1 1.1E+02 0.0025 28.6 4.7 35 90-124 182-216 (237)
304 TIGR02370 pyl_corrinoid methyl 26.1 1.1E+02 0.0023 27.7 4.5 54 70-125 133-189 (197)
305 PRK10886 DnaA initiator-associ 26.1 1.8E+02 0.0039 26.3 5.9 33 85-117 121-153 (196)
306 cd01018 ZntC Metal binding pro 26.1 2.2E+02 0.0047 27.1 6.8 53 71-123 187-241 (266)
307 PF04459 DUF512: Protein of un 25.9 57 0.0012 29.7 2.6 101 8-121 15-119 (204)
308 COG0036 Rpe Pentose-5-phosphat 25.9 5.3E+02 0.012 23.8 9.5 46 78-123 87-134 (220)
309 KOG0780 Signal recognition par 25.8 2.7E+02 0.0058 28.2 7.2 160 85-245 168-337 (483)
310 PF12017 Tnp_P_element: Transp 25.8 94 0.002 29.1 4.0 39 87-125 196-234 (236)
311 TIGR00216 ispH_lytB (E)-4-hydr 25.7 4E+02 0.0086 25.7 8.3 22 167-188 103-124 (280)
312 cd02072 Glm_B12_BD B12 binding 25.5 1.7E+02 0.0036 24.5 5.1 81 25-124 22-110 (128)
313 PRK00724 formate dehydrogenase 25.4 1.2E+02 0.0027 28.8 4.9 35 90-124 211-245 (263)
314 PF14163 SieB: Superinfection 25.3 49 0.0011 28.5 2.0 24 473-496 34-57 (151)
315 TIGR02329 propionate_PrpR prop 25.1 6E+02 0.013 27.1 10.4 37 85-125 130-166 (526)
316 KOG1250 Threonine/serine dehyd 25.1 3.2E+02 0.007 27.7 7.6 70 87-188 99-171 (457)
317 cd04886 ACT_ThrD-II-like C-ter 24.9 2.5E+02 0.0053 19.6 5.6 66 14-104 7-72 (73)
318 PF07297 DPM2: Dolichol phosph 24.7 3.1E+02 0.0067 20.7 6.7 26 469-494 41-66 (78)
319 KOG0068 D-3-phosphoglycerate d 24.7 1.8E+02 0.0039 28.8 5.7 51 156-206 50-100 (406)
320 PRK10747 putative protoheme IX 24.4 92 0.002 31.7 4.2 17 469-485 37-53 (398)
321 PRK11543 gutQ D-arabinose 5-ph 24.3 3.7E+02 0.008 26.2 8.3 112 85-203 27-141 (321)
322 PRK01045 ispH 4-hydroxy-3-meth 24.1 4.8E+02 0.01 25.4 8.7 22 167-188 103-124 (298)
323 TIGR01370 cysRS possible cyste 24.0 2.7E+02 0.0058 27.4 7.0 63 10-109 244-306 (315)
324 PRK11302 DNA-binding transcrip 23.5 5.3E+02 0.011 24.5 9.1 106 87-203 116-226 (284)
325 TIGR02826 RNR_activ_nrdG3 anae 23.1 2.2E+02 0.0048 24.4 5.6 48 74-122 63-111 (147)
326 COG5012 Predicted cobalamin bi 23.1 70 0.0015 29.4 2.5 55 71-125 154-209 (227)
327 PRK14178 bifunctional 5,10-met 22.7 4.6E+02 0.01 25.3 8.1 64 157-220 130-202 (279)
328 PRK09529 bifunctional acetyl-C 22.6 5.6E+02 0.012 28.0 9.3 145 84-239 146-297 (711)
329 CHL00200 trpA tryptophan synth 22.6 6.8E+02 0.015 23.8 11.3 118 78-203 96-231 (263)
330 cd03017 PRX_BCP Peroxiredoxin 22.6 2E+02 0.0044 23.7 5.3 37 87-123 44-80 (140)
331 PF01488 Shikimate_DH: Shikima 22.3 1.5E+02 0.0033 24.8 4.4 35 87-121 22-56 (135)
332 TIGR02329 propionate_PrpR prop 22.2 9.6E+02 0.021 25.5 11.7 42 155-198 123-164 (526)
333 PF13580 SIS_2: SIS domain; PD 22.1 79 0.0017 26.7 2.6 37 70-108 102-138 (138)
334 COG3707 AmiR Response regulato 22.0 5.6E+02 0.012 23.1 7.9 83 20-125 19-102 (194)
335 PF02634 FdhD-NarQ: FdhD/NarQ 21.9 1.2E+02 0.0027 28.3 4.1 35 90-124 182-216 (236)
336 PF01297 TroA: Periplasmic sol 21.9 2E+02 0.0043 27.1 5.6 54 71-124 167-224 (256)
337 PRK05742 nicotinate-nucleotide 21.8 6.1E+02 0.013 24.4 8.8 83 88-203 175-261 (277)
338 PF03345 DDOST_48kD: Oligosacc 21.8 3.9E+02 0.0085 27.5 7.9 94 15-126 10-105 (423)
339 PRK11337 DNA-binding transcrip 21.7 6.5E+02 0.014 24.1 9.3 110 87-203 128-239 (292)
340 cd03018 PRX_AhpE_like Peroxire 21.7 2.1E+02 0.0045 24.0 5.3 37 87-123 49-85 (149)
341 PF10727 Rossmann-like: Rossma 21.6 3E+02 0.0065 22.9 5.9 43 76-122 13-55 (127)
342 COG3954 PrkB Phosphoribulokina 21.5 3E+02 0.0064 24.9 6.0 40 157-196 43-82 (289)
343 PRK09545 znuA high-affinity zi 21.3 2.4E+02 0.0052 27.6 6.2 53 71-123 220-276 (311)
344 cd06533 Glyco_transf_WecG_TagA 21.2 5.6E+02 0.012 22.4 10.0 33 88-121 34-66 (171)
345 KOG3139 N-acetyltransferase [G 20.9 1.8E+02 0.004 25.3 4.5 51 75-125 86-143 (165)
346 PRK13670 hypothetical protein; 20.7 5.2E+02 0.011 26.3 8.5 98 74-196 2-113 (388)
347 TIGR03679 arCOG00187 arCOG0018 20.5 6E+02 0.013 23.3 8.3 37 88-124 9-58 (218)
348 PF01515 PTA_PTB: Phosphate ac 20.4 5.9E+02 0.013 25.1 8.6 41 86-127 24-64 (319)
349 PRK05265 pyridoxine 5'-phospha 20.3 1.9E+02 0.004 27.1 4.7 38 86-124 112-149 (239)
350 COG0052 RpsB Ribosomal protein 20.3 7.3E+02 0.016 23.4 11.1 47 84-130 48-96 (252)
351 PF08510 PIG-P: PIG-P; InterP 20.2 2.3E+02 0.005 23.5 5.0 42 442-483 12-54 (126)
352 PF00578 AhpC-TSA: AhpC/TSA fa 20.0 1.8E+02 0.0038 23.4 4.3 58 66-123 20-82 (124)
No 1
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-80 Score=623.17 Aligned_cols=459 Identities=60% Similarity=0.962 Sum_probs=423.6
Q ss_pred ccCC-ceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecc
Q 010234 3 LLDG-SVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGL 81 (514)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~ 81 (514)
..+| ..+|+++..|+.+.+...+|+++|||||++|+++.+. ..+.+..+.+..++...|+||+|+|++|+
T Consensus 511 ~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~~~~---------~~~~~~~l~~~s~~~~~E~~LtFvGlVGi 581 (972)
T KOG0202|consen 511 GSDGQTKVPLTQASRETILANVYEMGSEGLRVLALASKDSPG---------QVPDDQDLNDTSNRATAESDLTFVGLVGI 581 (972)
T ss_pred ccCCceeeeCcHHHHHHHHHHHHHHhhccceEEEEEccCCcc---------cChhhhhhcccccccccccceEEEEEeec
Confidence 3444 5699999999999999999999999999999997542 12333445566778899999999999999
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
.||+|++++++|+.|+++||+|.|+|||+..+|.++|+++|+.+.+.++....++|++++.+.+++.........+|+|+
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 99999999999999999999999999999999999999999999888888999999999999999988888889999999
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHH
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMK 241 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~ 241 (514)
+|.+|.++++.||+.++.|+|.|||.||.|+||.||+|||||.+|++++|++||.|+.|+|+..|..+++|||.+|.||+
T Consensus 662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GTdVaKeAsDMVL~DDnFstIvaAVEEGr~IynNik 741 (972)
T KOG0202|consen 662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGTDVAKEASDMVLADDNFSTIVAAVEEGRAIYNNIK 741 (972)
T ss_pred CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCccHhhHhhhhcEEecCcHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHH
Q 010234 242 AFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYL 321 (514)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~ 321 (514)
+++.|.++.|+..+...++...++.|.|++|+|+||+|+++|.+|+-+|+++|+|+++|++|||++++++++.|.+++++
T Consensus 742 ~Fir~~lSsnVgev~~I~l~aa~~~p~pL~pvQiLWiNlvtDG~PA~aLG~ep~D~DiM~kpPR~~~~~iit~~l~~r~l 821 (972)
T KOG0202|consen 742 NFIRYLLSSNVGEVVLIFLTAAFGIPEPLIPVQILWINLVTDGPPATALGFEPVDPDIMKKPPRDSKDGIITGWLIFRYL 821 (972)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCCCCcccchhhheeeeeccCCchhhcCCCCCChhHHhCCCCCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcch
Q 010234 322 VIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKV 401 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (514)
..|++.++.+++++..|+.+. +..+.+.++.+|..|.. .+...+|++|...
T Consensus 822 ~~g~~vg~~Tv~~f~~~~~~~-----------~~~vt~~~~~~~~~c~~----------------~~~~~~c~~F~~~-- 872 (972)
T KOG0202|consen 822 AIGIIVGVATVGVFVWWMYGA-----------DGKVTYRQLAHYNSCCR----------------DFYGSRCAVFEDM-- 872 (972)
T ss_pred HhheeeeeeEhHhhhHHHhcC-----------CCCcChhhhcchhhhcc----------------cccccchhhhccc--
Confidence 999999999999988887531 23345556666666544 1235567777775
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccccccccccccCChhhHHHHHHHH
Q 010234 402 KAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIA 481 (514)
Q Consensus 402 ~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~~~f~~~~l~~~~w~~~l~~~ 481 (514)
...|++|.++++.-+||.+++++..+++|..++|.|+|+.+++.+++.++++++|+|+++..|.+.++++..|++++.+.
T Consensus 873 ~~~tMa~tv~V~~emfNaL~~~se~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l~~~ew~~vl~~s 952 (972)
T KOG0202|consen 873 CPLTMALTVLVFIEMFNALNCLSENKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPLSLAEWLLVLAIS 952 (972)
T ss_pred ccceEEEeehhHHHHHHHhhcccCCcceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCCcHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccC
Q 010234 482 FPVVLIDEVLKFVGRCTN 499 (514)
Q Consensus 482 ~~~~l~~e~~K~~~r~~~ 499 (514)
+..++++|++|++.|+..
T Consensus 953 ~~V~i~dEilK~~~R~~~ 970 (972)
T KOG0202|consen 953 SPVIIVDEILKFIARNYF 970 (972)
T ss_pred hhhhhHHHHHHHHHHhcc
Confidence 999999999999999764
No 2
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=2.8e-65 Score=563.94 Aligned_cols=450 Identities=66% Similarity=1.084 Sum_probs=385.9
Q ss_pred CCceeeCCHHHHHHHHHHHHHHhh-cCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccC
Q 010234 5 DGSVVPLDHKSRNLILDALHEMST-GALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRD 83 (514)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~ 83 (514)
+|+..|++++.++++.+++++|++ +|+||+++|||.+++++.... ..+.+.++.+|+|++|+|+++++|
T Consensus 467 ~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k~~~~~~~~~~----------~~~~~~~~~~e~~l~~lGl~~~~D 536 (917)
T TIGR01116 467 DGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKDIPDPREEDL----------LSDPANFEAIESDLTFIGVVGMLD 536 (917)
T ss_pred CCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEEECCccccccc----------cccchhhhhhcCCcEEEEEeeeeC
Confidence 488899999999999999999999 999999999999865322110 011234567899999999999999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
+++++++++|++|+++|++++|+|||+..+|.++|+++|+..++..+....++|.++..+.+++......+..+|+|++|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 99999999999999999999999999999999999999998766554445678888888877666656667789999999
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAF 243 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~ 243 (514)
+||.++++.+|..++.|+|+|||.||++|+++||+||||| ++++.+|++||+++.++++..+.+++++||++++|++++
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~g~~~ak~aAD~vl~dd~f~~i~~~i~~GR~~~~ni~k~ 695 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-SGTEVAKEASDMVLADDNFATIVAAVEEGRAIYNNMKQF 695 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-CCcHHHHHhcCeEEccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHH
Q 010234 244 IRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI 323 (514)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~ 323 (514)
+.|.+++|+..++..+++.+++.+.|+++.|++|+|++++.+|+++++.+++++++|++||+++.+++++++.+++++..
T Consensus 696 i~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qll~inli~d~lp~~~l~~~~~~~~~m~~pP~~~~~~l~~~~~~~~~~~~ 775 (917)
T TIGR01116 696 IRYMISSNIGEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDEPLITGWLFFRYLVV 775 (917)
T ss_pred HHHHHhccHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCcchhHhcCCCCCCCCCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhh
Q 010234 324 GLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
|+++++.+++.|++++....+.+... . . ...|....+ ++.........+
T Consensus 776 g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~---------~~~~~~~~~------------------~~~~~~~~~~~~ 824 (917)
T TIGR01116 776 GVYVGLATVGGFVWWYLLTHFTGCDE---D-S---------FTTCPDFED------------------PDCYVFEGKQPA 824 (917)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccccc---c-c---------ccccccccc------------------ccccccccccch
Confidence 99999887766654432111100000 0 0 000000000 000000012457
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccccccccccccCChhhHHHHHHHHHH
Q 010234 404 MTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFP 483 (514)
Q Consensus 404 ~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~~~f~~~~l~~~~w~~~l~~~~~ 483 (514)
+|++|.+++++|++|.+++|+++.++|+.++++|++++++++++++++++++|+|+++.+|++.|+++.+|+++++++++
T Consensus 825 ~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~~~w~~~~~~~~~ 904 (917)
T TIGR01116 825 RTISLSVLVVIEMFNALNALSEDQSLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWLMVLKLSLP 904 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998888887888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 010234 484 VVLIDEVLKFVGR 496 (514)
Q Consensus 484 ~~l~~e~~K~~~r 496 (514)
.++++|++|++.|
T Consensus 905 ~~~~~e~~k~~~~ 917 (917)
T TIGR01116 905 VILVDEVLKFFSR 917 (917)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
No 3
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-70 Score=549.98 Aligned_cols=475 Identities=32% Similarity=0.530 Sum_probs=419.7
Q ss_pred cccCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecc
Q 010234 2 QLLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGL 81 (514)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~ 81 (514)
.+.+|++.|+|++.++.+.+...++.+.|.||++||++.++++++..... .+.+..+.--.++.|+|++++
T Consensus 517 i~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~---------f~~d~~n~p~~nl~FlGl~s~ 587 (1019)
T KOG0203|consen 517 ILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQ---------FDTDDVNFPTDNLRFLGLISM 587 (1019)
T ss_pred eeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceE---------eecCCCCCcchhccccchhhc
Confidence 35789999999999999999999999999999999999998765443322 111222223478999999999
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccc--------------------eecccChHHHh
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDI--------------------SLKSLTGKEFM 141 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~--------------------~~~~~~~~~~~ 141 (514)
-|++|..+++++.+++++||+++|+|||++.+|+++|++.||....... ...+++|.++.
T Consensus 588 idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~ 667 (1019)
T KOG0203|consen 588 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELP 667 (1019)
T ss_pred cCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccccc
Confidence 9999999999999999999999999999999999999999975533221 12346677777
Q ss_pred hhhHHH--HHHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhccccccc
Q 010234 142 EMHDKK--AHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLA 219 (514)
Q Consensus 142 ~~~~~~--~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~ 219 (514)
.+..+. +.+......+|+|.+|+||..+++..|..|+.|.+.|||.||.|+||.||+|||||.+|+|+.|++||.++.
T Consensus 668 ~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvsKqAADmILL 747 (1019)
T KOG0203|consen 668 DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILL 747 (1019)
T ss_pred ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHHHhhcceEEe
Confidence 775543 344455678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccc
Q 010234 220 DDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDI 299 (514)
Q Consensus 220 ~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~i 299 (514)
|+++.+++..+++||-+++|++|.+.|.+++|+..+.+.+++.+++.|.|+..+++|++++.+|++|++++++++|+.++
T Consensus 748 DDNFASIVtGVEEGRLiFDNLKKsIAYTLTsNipEI~PfL~fi~~giPLplgtitIL~IDLgTDmvPAiSLAYE~aEsDI 827 (1019)
T KOG0203|consen 748 DDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFILFGIPLPLGTVTILCIDLGTDIVPAISLAYEKAESDI 827 (1019)
T ss_pred cCcchhheeecccceehhhhHHHHHHHHHHhcchhHhHHHHHHHhCCCcccchhhhhhhHhhcccchhhhHhccCchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-CCCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccC
Q 010234 300 MKKPPRR-SDDSLISAWIL-FRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVS 377 (514)
Q Consensus 300 m~~~P~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (514)
|+|+||. +.+.+.|.+.+ ..++..|.+++++.++.|+..+...+|.+..+. +...+|++...+
T Consensus 828 M~r~PR~p~~D~LVN~rLi~~aY~qIG~iqa~agF~tYFvima~nGf~P~~L~---------------~ir~~W~d~~~~ 892 (1019)
T KOG0203|consen 828 MLRPPRNPKDDKLVNKRLISYSYLQIGMIQALAGFFTYFVIMAENGFLPRTLV---------------GLREDWDDDGVN 892 (1019)
T ss_pred HhcCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH---------------hhHHhhhhhhhh
Confidence 9999998 78888886554 578899999999999999999999888876543 234567777777
Q ss_pred CCc-CCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHh
Q 010234 378 PFT-AGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILY 456 (514)
Q Consensus 378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ 456 (514)
.++ ++++.|+++.+.... .+.+|.+|++++++|+++.+.|++|+.|+|.++ ++||.++++++..++++++++|
T Consensus 893 Dl~DsyGQeWtyeqRk~le-----~tc~taFfvsIvV~Q~adLii~KTRRnSlfqqG-mrN~vl~f~v~~e~~La~fl~y 966 (1019)
T KOG0203|consen 893 DLTDSYGQEWTYEQRKYLE-----YTCYTAFFISIVVVQWADLIICKTRRNSIFQQG-MRNKVLIFAVIFETCLACFLCY 966 (1019)
T ss_pred hhhhhccccccHHHHHHHH-----HhhhhheeeeehHHhHhhHHhhhcchhHHHHhh-hhhhhHHHHHHHHHHHHHHHhc
Confidence 776 778888775554322 457889999999999999999999999999988 7999999999999999999999
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCccccc
Q 010234 457 VPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCTNGSQTSRR 506 (514)
Q Consensus 457 ip~~~~~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K~~~r~~~~~~~~~~ 506 (514)
.|++...++..|+.+.+|+..++.+++++++||++|++.|+++..|..|.
T Consensus 967 ~pg~~~~l~~~pl~~~~wl~a~P~~ilIfvydE~Rk~~IR~~P~gw~e~e 1016 (1019)
T KOG0203|consen 967 CPGVLYALGMYPLKFQWWLVAFPFGILIFVYDEVRKLFIRRYPGGWLEKE 1016 (1019)
T ss_pred CccHHHHhccCCCCcEEEEecccceeeeeeHHHHHhHhhhhCCCchhhhh
Confidence 99999999999999999999999999999999999999999999998763
No 4
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=6.2e-65 Score=563.06 Aligned_cols=445 Identities=30% Similarity=0.511 Sum_probs=376.1
Q ss_pred ceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCC
Q 010234 7 SVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPR 86 (514)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~ 86 (514)
+++++++++++++.+.+++|+++|+||||+|||.+++++...+ ..+ . +..+.+.+|+||+|+|+++++|++|
T Consensus 577 ~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~--~~~---~---~~~~~~~~e~~L~~~G~~~~~Dp~r 648 (1053)
T TIGR01523 577 KISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDD--QLK---N---ETLNRATAESDLEFLGLIGIYDPPR 648 (1053)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccch--hhh---c---cccchhhhccCCEEEEEEeeecCCc
Confidence 5679999999999999999999999999999999876432110 000 0 0112346789999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcc------ceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNED------ISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
++++++|++|+++||+++|+|||+..+|.++|+++|+...+.. ....+++|.++..+.+.+.........+|+|
T Consensus 649 ~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V~ar 728 (1053)
T TIGR01523 649 NESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLVIAR 728 (1053)
T ss_pred hhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeEEEe
Confidence 9999999999999999999999999999999999999754211 1235788999888876655555556789999
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHH
Q 010234 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNM 240 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i 240 (514)
++|+||.++++.+|..++.|+|+|||.||+|||+.||+|||||.++++.+|++||+++.++++..+..++++||++++|+
T Consensus 729 ~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~vak~aADivl~dd~f~~I~~~i~~gR~~~~ni 808 (1053)
T TIGR01523 729 CAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSDVAKDASDIVLSDDNFASILNAIEEGRRMFDNI 808 (1053)
T ss_pred cCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccHHHHHhcCEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----C-CCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHH
Q 010234 241 KAFIRYMISSNIGEVASIFFTAALG----I-PEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAW 315 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~ 315 (514)
++++.|.+++|+..+++.+++.+++ . +.|+++.|++|+|++++.+|+++++++|+++++|++||+.+.++++++.
T Consensus 809 ~k~i~y~l~~ni~~i~~~~~~~~~~~~~g~~~~Pl~~~qiL~inli~d~~palaL~~e~~~~~~m~~~Pr~~~~~l~~~~ 888 (1053)
T TIGR01523 809 MKFVLHLLAENVAEAILLIIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPDLMDRLPHDNEVGIFQKE 888 (1053)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcccCCCcCchHHHHHHHHHHHHHHHHHHhhccCCCChhHHhcCCCCCCccccCHH
Confidence 9999999999999999998888874 2 4689999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCc
Q 010234 316 ILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDY 395 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
.+.+++..|++.++.+++.|++++.. + + ..... ..|..+.+ .++.
T Consensus 889 ~~~~~~~~g~~~~~~~l~~~~~~~~~--~-~--~~~~~------------~~~~~~~~-----------------~~~~- 933 (1053)
T TIGR01523 889 LIIDMFAYGFFLGGSCLASFTGILYG--F-G--SGNLG------------HDCDAHYH-----------------AGCN- 933 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--c-c--Ccccc------------cccccccc-----------------cccc-
Confidence 88889999999988887777644321 0 0 00000 01111000 0000
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccC---------------CCcchHHHHHHHHHHHHHHHHHhcccc
Q 010234 396 FHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMP---------------PWVNPWLLLAMSVSFGLHFLILYVPFL 460 (514)
Q Consensus 396 ~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~---------------~~~N~~~~~~~~~~~~l~~~~~~ip~~ 460 (514)
....++|++|.+++++|+++.+++|+++.++|+.+ .++|++++++++++++++++++|+|++
T Consensus 934 ---~~~~a~t~~f~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~ 1010 (1053)
T TIGR01523 934 ---DVFKARSAAFATMTFCALILAVEVKDFDNSFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVI 1010 (1053)
T ss_pred ---chhhhHHHHHHHHHHHHHHHHHHHhcCchhhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 01457999999999999999999999988888653 679999999999999999999999999
Q ss_pred cc-ccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010234 461 AQ-IFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCT 498 (514)
Q Consensus 461 ~~-~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K~~~r~~ 498 (514)
+. +|++.|+++ .|+++++++++.++++|++|++.|+.
T Consensus 1011 ~~~~f~~~~l~~-~w~~~~~~~~~~~~~~e~~K~~~r~~ 1048 (1053)
T TIGR01523 1011 NDDVFKHKPIGA-EWGLAAAATIAFFFGAEIWKCGKRRL 1048 (1053)
T ss_pred hhhhhccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 86 999999996 89999999999999999999987655
No 5
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=7.1e-65 Score=564.21 Aligned_cols=472 Identities=28% Similarity=0.476 Sum_probs=381.9
Q ss_pred cCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccC
Q 010234 4 LDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRD 83 (514)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~ 83 (514)
.+|++.+++++.++.+.+++++|+++|+||+++|||.++++++..... .+.++.+.+|+||+|+|+++++|
T Consensus 497 ~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~---------~~~~~~~~~e~~L~flGli~i~D 567 (997)
T TIGR01106 497 IHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQ---------FDTDDVNFPTDNLCFVGLISMID 567 (997)
T ss_pred cCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCccccccccc---------ccchhhhccccCcEEEEEEeccC
Confidence 578889999999999999999999999999999999987643321100 01122234589999999999999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcc--------------------ceecccChHHHhhh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNED--------------------ISLKSLTGKEFMEM 143 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~--------------------~~~~~~~~~~~~~~ 143 (514)
++|++++++|++|+++|++++|+|||+..++.++++++|+...+.. -...+++|.++..+
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 9999999999999999999999999999999999999999654321 01247788888887
Q ss_pred hHHHHHH--hhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCC
Q 010234 144 HDKKAHL--RQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADD 221 (514)
Q Consensus 144 ~~~~~~~--~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~ 221 (514)
.+++... ......+|+|++|+||.++++.+|..++.|+|+|||.||+|||++||+|||||++|+|.+|++||+++.++
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~vak~aADivL~dd 727 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQAADMILLDD 727 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccHHHHHhhceEEecC
Confidence 6654332 22334699999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccC
Q 010234 222 DFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMK 301 (514)
Q Consensus 222 ~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~ 301 (514)
++..+.+++++||+++.|+++++.|.++.|+..+++.+++.+++.|+|++++|++|+|+++|.+|+++++.+|+++++|+
T Consensus 728 ~f~~Iv~ai~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qlL~inli~d~lp~~al~~e~~~~~~m~ 807 (997)
T TIGR01106 728 NFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMK 807 (997)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCC
Q 010234 302 KPPRRS-DDSLISAWILFRY-LVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPF 379 (514)
Q Consensus 302 ~~P~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (514)
+||+++ ...+++.+.+..+ +..|+++++..++++++.+...++.+..... ....|.+...+++
T Consensus 808 ~~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~~~~~~~~ 872 (997)
T TIGR01106 808 RQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPLHLVG---------------LRVQWDDRWINDL 872 (997)
T ss_pred CCCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccc---------------ccccccccccccc
Confidence 999985 6788888776654 4568888887776666544222221110000 0000100000000
Q ss_pred cC-CCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhcc
Q 010234 380 TA-GNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVP 458 (514)
Q Consensus 380 ~~-~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip 458 (514)
+. .+..+....+ ......++|++|.+++++|+++.++||+++.++|+.+ +.|++++++++++++++++++|+|
T Consensus 873 ~~~~~~~~~~~~~-----~~~~~~~~t~~f~~~v~~q~~~~~~~R~~~~~~f~~~-~~n~~l~~~~~~~~~l~~~~~~~p 946 (997)
T TIGR01106 873 EDSYGQEWTYEQR-----KYVEFTCHTAFFVSIVVVQWADLIICKTRRNSVFQQG-MKNKILIFGLFEETALAAFLSYCP 946 (997)
T ss_pred ccccccccchhcc-----cchhhhhhHHHHHHHHHHHHHHHHHhccCcccccccC-CcCHHHHHHHHHHHHHHHHHHHhh
Confidence 00 0000000000 0001247899999999999999999999888888766 799999999999999999999999
Q ss_pred ccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 010234 459 FLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCTNGSQTSR 505 (514)
Q Consensus 459 ~~~~~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K~~~r~~~~~~~~~ 505 (514)
+++.+|++.++++.+|+++++++++.++++|++|++.|++..+|..|
T Consensus 947 ~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~~~~k~~~r~~~~~~~~~ 993 (997)
T TIGR01106 947 GMGVALRMYPLKPTWWFCAFPYSLLIFVYDEIRKLIIRRNPGGWVEK 993 (997)
T ss_pred hhHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhhH
Confidence 99999999999999999999999999999999999998876666543
No 6
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-66 Score=521.47 Aligned_cols=429 Identities=34% Similarity=0.532 Sum_probs=374.1
Q ss_pred ccCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEeccc
Q 010234 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLR 82 (514)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~ 82 (514)
..+|+..+++++.+..+++.++.||++|||++|+|||+..+.... ..+.++.+..+.+++++|++|++
T Consensus 578 ~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~lAy~df~~~~~~------------~~~~~~~~~~~~~lt~laivGIk 645 (1034)
T KOG0204|consen 578 DSNGELVPFNEDDRKSFKDVIEPMASEGLRTICLAYRDFVAGPDE------------EPSWDNEELPEGGLTLLAIVGIK 645 (1034)
T ss_pred CCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeEEeeccccCCCC------------CCCccccccCCCCeEEEEEeecc
Confidence 468999999999999999999999999999999999986554110 01223345668999999999999
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
||+|||++++|+.|+++||.|-|+|||+..+|+++|.+|||..++.+ ...+.|.++.++.+++.....++-.+++|++
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d--~~~lEG~eFr~~s~ee~~~i~pkl~VlARSS 723 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGD--FLALEGKEFRELSQEERDKIWPKLRVLARSS 723 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCc--cceecchhhhhcCHHHHHhhhhhheeeecCC
Confidence 99999999999999999999999999999999999999999887765 5789999999999999888888899999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKA 242 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~ 242 (514)
|.+|.-+++.+++.++.|++.|||.||.|+|+.||+|.|||.+|+|++|+++|+++.|+|+.+|+.++++||+.|.+++|
T Consensus 724 P~DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVAKEaSDIIi~DDNFssIVk~v~WGR~VY~nIqK 803 (1034)
T KOG0204|consen 724 PNDKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVAKEASDIIILDDNFSSIVKAVKWGRNVYDNIQK 803 (1034)
T ss_pred CchHHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhccccchhhhhhhCCeEEEcCchHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHH
Q 010234 243 FIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLV 322 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~ 322 (514)
+++|.++-|+..+...|+.++....+|++.+|+||+|+++|.+.+++|+.+||.+++|+|+|..+.++++++-++..++.
T Consensus 804 FiQFQLTVNVvAliv~fv~A~~~~dsPLtAVQlLWVNLIMDTLgALALATepPt~~Lm~RkP~GR~~~LIt~tMwknil~ 883 (1034)
T KOG0204|consen 804 FLQFQLTVNVVALIVNFVSACATGDSPLTAVQLLWVNLIMDTLGALALATEPPTDELMKRKPVGRTKPLITRTMWKNILG 883 (1034)
T ss_pred hheeEEEEEEEeehhhhhhhhhcCCccHHHHHHHHHHHHHHHHHHHHhccCCCChHHhcCCCCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877666777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchh
Q 010234 323 IGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVK 402 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
+++++-+..+.+. +.+..+++. ++ +. + + ....
T Consensus 884 qa~YQl~vl~iL~---F~G~~if~~----~~-------~~-~-------------------------~--------~~~~ 915 (1034)
T KOG0204|consen 884 QAVYQLIVLFILN---FAGKSIFGL----NG-------PL-H-------------------------S--------PPSV 915 (1034)
T ss_pred HHHHHHHHHHHHH---hcchhhhcc----CC-------CC-C-------------------------C--------chhh
Confidence 8888755443322 222111110 00 00 0 0 0134
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccccccccccccCChhhHHHHHHHHH
Q 010234 403 AMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAF 482 (514)
Q Consensus 403 ~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~~~f~~~~l~~~~w~~~l~~~~ 482 (514)
..|+.|.+|+++|+||.++.|.....-...+.++|++|+..+...+++|++++. +...+|+++++++.+|++|+.+++
T Consensus 916 ~nTiIFNtFV~~qvFNEinaRki~~~NvFkgi~~N~~F~~ii~~T~v~QviIve--F~g~~~st~~L~~~qWl~ci~~g~ 993 (1034)
T KOG0204|consen 916 HNTIIFNTFVFCQVFNEINARKIDERNVFKGIFRNRLFCVIITITVVSQVIIVE--FGGAFFSTTPLSLTQWLWCIFIGV 993 (1034)
T ss_pred heeeehhHHHHHHHHHHHhhcchhHHhHHHHHhcCceEEEEeeeeeehhhhhhh--hcCcceeeecccHHHHHHHHHHHH
Confidence 568999999999999999999876443445888999999999999999987654 467779999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 010234 483 PVVLIDEVLKFVG 495 (514)
Q Consensus 483 ~~~l~~e~~K~~~ 495 (514)
+.+.+..+.|.+-
T Consensus 994 ~sl~~g~~ik~iP 1006 (1034)
T KOG0204|consen 994 LSLPWGQLLKCIP 1006 (1034)
T ss_pred HHHHHHHHheecc
Confidence 9999999999764
No 7
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=3.8e-61 Score=529.97 Aligned_cols=406 Identities=39% Similarity=0.678 Sum_probs=368.3
Q ss_pred CCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCC
Q 010234 5 DGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDP 84 (514)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~ 84 (514)
+|...+++++.++++.+.+++++++|+||+++|||.+ +++++|+|+++++|+
T Consensus 477 ~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~----------------------------~~~l~~lGli~l~Dp 528 (884)
T TIGR01522 477 DGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPE----------------------------KGQLTFLGLVGINDP 528 (884)
T ss_pred CCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcC----------------------------CCCeEEEEEEeccCc
Confidence 4777889999999999999999999999999999963 367999999999999
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
++|+++++|++|+++|++++|+|||+..+|.++|+++|+...... .++|+++..+.+++......+..+|+|++|+
T Consensus 529 ~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~----~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~ 604 (884)
T TIGR01522 529 PRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQ----SVSGEKLDAMDDQQLSQIVPKVAVFARASPE 604 (884)
T ss_pred chhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCc----eeEhHHhHhCCHHHHHHHhhcCeEEEECCHH
Confidence 999999999999999999999999999999999999999765432 4678888887776655556678899999999
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHH
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFI 244 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~ 244 (514)
+|.++++.+|..++.|+|+|||.||++|+++||+|||||.++++.++++||+++.++++..+.+++++||++++|+++++
T Consensus 605 ~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g~~g~~va~~aaDivl~dd~~~~i~~~i~~gR~~~~ni~k~i 684 (884)
T TIGR01522 605 HKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATILSAIEEGKGIFNNIKNFI 684 (884)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHHH
Q 010234 245 RYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIG 324 (514)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~~ 324 (514)
.|.++.|+..++..+++.+++.+.|+++.|++|+|++++.+|+++++.+|+++++|++||+++.++++++..+..++.+|
T Consensus 685 ~~~l~~ni~~~~~~~~~~~~~~~~pl~~~qiL~inl~~d~~~a~~l~~e~~~~~~m~~~P~~~~~~~~~~~~~~~~~~~g 764 (884)
T TIGR01522 685 TFQLSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPPAQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSA 764 (884)
T ss_pred HHHhhhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhhHHHHhccCCCChhHhhCCCCCCCCCccCHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhH
Q 010234 325 LYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAM 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (514)
++.++..++.|+..+. .+ .....++
T Consensus 765 ~~~~~~~~~~~~~~~~-----------~~--------------------------------------------~~~~~~~ 789 (884)
T TIGR01522 765 IIIVVGTLFVFVREMQ-----------DG--------------------------------------------VITARDT 789 (884)
T ss_pred HHHHHHHHHHHHHHHc-----------CC--------------------------------------------cchhhHH
Confidence 8877665444332110 00 0002468
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccccccccccccCChhhHHHHHHHHHHH
Q 010234 405 TLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPV 484 (514)
Q Consensus 405 t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~~~f~~~~l~~~~w~~~l~~~~~~ 484 (514)
|++|.+++++|++|.+++|+++.+.|+.++++|++++++++++++++++++|+|+++.+|++.|+++.+|+++++++++.
T Consensus 790 t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~ 869 (884)
T TIGR01522 790 TMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLITSSV 869 (884)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988889888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 010234 485 VLIDEVLKFVGRC 497 (514)
Q Consensus 485 ~l~~e~~K~~~r~ 497 (514)
+++.|++|++.|+
T Consensus 870 ~~~~~~~k~~~~~ 882 (884)
T TIGR01522 870 CIVDEIRKKVERS 882 (884)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 8
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=5.7e-61 Score=531.67 Aligned_cols=421 Identities=32% Similarity=0.546 Sum_probs=364.1
Q ss_pred cCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccC
Q 010234 4 LDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRD 83 (514)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~ 83 (514)
.+|++.++++ .++++.+.+++++++|+||+++|||.++.++.. ..+..|+|++|+|+++++|
T Consensus 517 ~~g~~~~~~~-~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~-----------------~~~~~e~~l~~lGli~~~D 578 (941)
T TIGR01517 517 SNGEATPISD-DKDRCADVIEPLASDALRTICLAYRDFAPEEFP-----------------RKDYPNGGLTLIGVVGIKD 578 (941)
T ss_pred cCCCcccCcH-HHHHHHHHHHHHHhcCCEEEEEEEEecCccccc-----------------cccccccCcEEEEEeeccC
Confidence 4677778887 789999999999999999999999987643211 0123478999999999999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++||+++++|++|+++|++++|+|||+..+|.++|+++|+...+. .+++|+++..+.+++......+..+|+|++|
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~----~vi~G~~~~~l~~~el~~~i~~~~Vfar~sP 654 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGG----LAMEGKEFRRLVYEEMDPILPKLRVLARSSP 654 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCc----eEeeHHHhhhCCHHHHHHHhccCeEEEECCH
Confidence 999999999999999999999999999999999999999976543 3678888888877665555566789999999
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAF 243 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~ 243 (514)
+||.++++.+|+.++.|+|+|||.||+|||++||+|||||.+++|.+|++||+++.++++..+..++++||+++.|++++
T Consensus 655 e~K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~gtdvAk~aADivL~dd~f~~I~~~i~~gR~~~~ni~k~ 734 (941)
T TIGR01517 655 LDKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKF 734 (941)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCccHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHH
Q 010234 244 IRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI 323 (514)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~ 323 (514)
+.|.+++|+..++..+++.+++.++|+++.|++|+|++++.+|+++++.++|++++|++||+++.++++++.++.+++.+
T Consensus 735 i~~~l~~n~~~i~~~~~~~~~~~~~pl~~~qil~inl~~d~~~al~l~~e~~~~~lm~~~P~~~~~~li~~~~~~~i~~~ 814 (941)
T TIGR01517 735 LQFQLTVNVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQ 814 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhHHHHccCCccHHHHhCCCCCCCCCcCCHHHHHHHHHH
Confidence 99999999999999999889989999999999999999999999999999999999999999999999999888888889
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhh
Q 010234 324 GLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
++++++..++.++.... +++.. .. ..|. + .....+
T Consensus 815 ~~~~~~~~~~~~~~~~~---~~~~~---~~------------~~~~-------------------------~--~~~~~~ 849 (941)
T TIGR01517 815 AGYQLVVTFILLFAGGS---IFDVS---GP------------DEIT-------------------------S--HQQGEL 849 (941)
T ss_pred HHHHHHHHHHHHHHHHh---hhccc---Cc------------cccc-------------------------c--cccchh
Confidence 98887776655443210 11000 00 0000 0 001347
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-CccccCCCcchHHHHHHHHHHHHHHHHHhccccccccccccCChhhHHHHHHHHH
Q 010234 404 MTLSLSVLVAIEMFNSLNALSEDG-SLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAF 482 (514)
Q Consensus 404 ~t~~f~~lv~~~~~~~~~~~~~~~-s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~~~f~~~~l~~~~w~~~l~~~~ 482 (514)
+|++|.+++++|+++.+++|+.+. ++|+ ++++|++++++++++++++++ ++|+++.+|++.++++.+|++++++++
T Consensus 850 ~t~~f~~~v~~~~~~~~~~r~~~~~~~~~-~~~~n~~~~~~~~~~~~l~~~--~~~~~~~~f~~~~l~~~~w~~~~~~~~ 926 (941)
T TIGR01517 850 NTIVFNTFVLLQLFNEINARKLYERNVFE-GLFKNRIFVTIMGFTFGFQVI--IVEFGGSFFSTVSLSIEQWIGCVLLGM 926 (941)
T ss_pred hHHHHHHHHHHHHHHHHHHccCCcccccc-cccccHHHHHHHHHHHHHHHH--HHHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 899999999999999999998765 4555 888999999999998888865 446788999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010234 483 PVVLIDEVLKFV 494 (514)
Q Consensus 483 ~~~l~~e~~K~~ 494 (514)
+.+++.|+.|++
T Consensus 927 ~~~~~~~~~~~~ 938 (941)
T TIGR01517 927 LSLIFGVLLRLI 938 (941)
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 9
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=3.6e-59 Score=511.73 Aligned_cols=415 Identities=24% Similarity=0.362 Sum_probs=346.3
Q ss_pred cCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccC
Q 010234 4 LDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRD 83 (514)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~ 83 (514)
.+|++.+++++.++++.+.+++++++|+||+++|||.++.++... ...+..|+|++|+|+++++|
T Consensus 485 ~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~---------------~~~~~~e~~l~~lGli~l~D 549 (903)
T PRK15122 485 DGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRA---------------QYSTADERDLVIRGFLTFLD 549 (903)
T ss_pred cCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCcccccc---------------ccccccccCcEEEEEEeccC
Confidence 457778999999999999999999999999999999875432100 01123478999999999999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++||+++++|++|+++||+++|+|||+..+|.++|+++|+... ..++|.++..+.+++......+..+|+|.+|
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~------~vi~G~el~~~~~~el~~~v~~~~VfAr~sP 623 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPG------EPLLGTEIEAMDDAALAREVEERTVFAKLTP 623 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC------CccchHhhhhCCHHHHHHHhhhCCEEEEeCH
Confidence 9999999999999999999999999999999999999999532 3578999998887766666666789999999
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAF 243 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~ 243 (514)
+||.++++.+|..++.|+|+|||.||+|+|++||+||||| +++|++|++||+|+.++++..+.+++++||++++|++++
T Consensus 624 e~K~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg-~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~i~~nI~k~ 702 (903)
T PRK15122 624 LQKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKY 702 (903)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC-cccHHHHHhcCEEEecCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHH
Q 010234 244 IRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI 323 (514)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~ 323 (514)
+.|.++.|+..++..++..++..+.|+++.|++|+|+++|. |+++++.+|+++++| +||++++.+++++..++ .
T Consensus 703 i~~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~~nli~D~-~~lal~~d~~~~~~m-~~P~~~~~~~~~~~~~~----~ 776 (903)
T PRK15122 703 LNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLLQNLMYDI-SQLSLPWDKMDKEFL-RKPRKWDAKNIGRFMLW----I 776 (903)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHHhhcCCCCCHhhc-CCCCCCChhhhHHHHHH----H
Confidence 99999999999888877777766689999999999999995 999999999999999 99999999999874433 3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhh
Q 010234 324 GLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
|...+++.++.+++.+.. +.. +.. ......
T Consensus 777 g~~~~~~~~~~~~~~~~~---~~~-----~~~------------------------------------------~~~~~~ 806 (903)
T PRK15122 777 GPTSSIFDITTFALMWFV---FAA-----NSV------------------------------------------EMQALF 806 (903)
T ss_pred HHHHHHHHHHHHHHHHHH---hcc-----CcH------------------------------------------hhhhhh
Confidence 333333333333221100 000 000 000113
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccc--cccccccccCChhhHHHHHHHH
Q 010234 404 MTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPF--LAQIFGIVPLSFNEWLLVLAIA 481 (514)
Q Consensus 404 ~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~--~~~~f~~~~l~~~~w~~~l~~~ 481 (514)
+|..|.+++++|+++.+++|+++.+ +|.|++.+..++++++++++++++|+ ++.+|++.++++.+|+++++.+
T Consensus 807 ~t~~f~~l~~~q~~~~~~~R~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~ 881 (903)
T PRK15122 807 QSGWFIEGLLSQTLVVHMLRTQKIP-----FIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATL 881 (903)
T ss_pred HHHHHHHHHHHHHHHHHhhCcCCCC-----cCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5778999999999999999987543 44577777888889999999999997 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCC
Q 010234 482 FPVVLIDEVLKFVGRCTNGS 501 (514)
Q Consensus 482 ~~~~l~~e~~K~~~r~~~~~ 501 (514)
++.+++.|+.|.+..+..+.
T Consensus 882 ~~~~~~~e~~k~~~~r~~~~ 901 (903)
T PRK15122 882 LGYCLVAQGMKRFYIRRFGQ 901 (903)
T ss_pred HHHHHHHHHHHHHHhhhccc
Confidence 99999999988554444333
No 10
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-60 Score=517.30 Aligned_cols=423 Identities=39% Similarity=0.632 Sum_probs=363.3
Q ss_pred CceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCC
Q 010234 6 GSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPP 85 (514)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l 85 (514)
|+..+++++.++.+.+..++|+++|+||+++|||.+++++.. .+. +++|+|++|+|+++++||+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~---------------~~~-~~~E~dl~~lGl~g~~Dpp 548 (917)
T COG0474 485 GELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKD---------------DEV-DEIESDLVFLGLTGIEDPP 548 (917)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc---------------chh-hhhhccceeehhhhccCCC
Confidence 667789999999999999999999999999999976543211 111 5779999999999999999
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhh
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRH 165 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~ 165 (514)
|++++++|+.|+++||+++|+|||+..+|.++|+++|+..+... ..+++|.++..+.+++......+..+|||++|+|
T Consensus 549 r~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~--~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~q 626 (917)
T COG0474 549 REDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAES--ALVIDGAELDALSDEELAELVEELSVFARVSPEQ 626 (917)
T ss_pred CccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCc--eeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHH
Confidence 99999999999999999999999999999999999998765443 4578999999998876555555566999999999
Q ss_pred HHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHH
Q 010234 166 KQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIR 245 (514)
Q Consensus 166 k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~ 245 (514)
|.++++.+|+.++.|+|+|||.||+||||+||+|||||.+|+|++|++||+++.++++..+..+++|||++|.|+++++.
T Consensus 627 K~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~Gtdaak~Aadivl~dd~~~~i~~av~eGR~~~~ni~k~i~ 706 (917)
T COG0474 627 KARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAVVEGRRVYVNIKKFIL 706 (917)
T ss_pred HHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecccHHHHHHhhcceEeecCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC-CchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHH-
Q 010234 246 YMISSNIGEVASIFFTAALGIP-EGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI- 323 (514)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~- 323 (514)
|.+++|+..++..+++.+++.+ .|+++.|++|+|++++.+|+++++.++++.+.|++||+++..++++.+.++++++.
T Consensus 707 ~~l~~n~~~~~~~~~~~~~~~~~~p~~~~qll~inll~d~~pa~~L~~~~~~~~~m~~~~~~p~~~i~~~~~~~~~i~~~ 786 (917)
T COG0474 707 YLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILII 786 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhhhhheeecCCCcccccccCCCCccccccchhHHHHHHHHH
Confidence 9999999999999999888888 89999999999999999999999999999999999999999999999999996554
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhh
Q 010234 324 GLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
+...++..++.|.+++...... ..+. .. .....
T Consensus 787 ~~~~~i~~~~~~~~~~~~~~~~-----~~~~-------------------------------------~~-----~~~~~ 819 (917)
T COG0474 787 GLLSAILFILTFLLYLLGFIAN-----TLGL-------------------------------------DL-----FQALL 819 (917)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-----ccch-------------------------------------hh-----HHHHH
Confidence 5555554444444433210000 0000 00 12557
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccccc-cccccccCChhhHHHHHHHH-
Q 010234 404 MTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLA-QIFGIVPLSFNEWLLVLAIA- 481 (514)
Q Consensus 404 ~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~-~~f~~~~l~~~~w~~~l~~~- 481 (514)
++++|..+++.|.++.+.+++.+.+.+...++.|+.++.++++.++++++..+.|... ..|...+++...|++++++.
T Consensus 820 ~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 899 (917)
T COG0474 820 QTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVAL 899 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCcHHHHHHHHHHHH
Confidence 8999999999999999999999888888788899999999999999999999999888 79999999988899877776
Q ss_pred -HHHHHHHHHHHH
Q 010234 482 -FPVVLIDEVLKF 493 (514)
Q Consensus 482 -~~~~l~~e~~K~ 493 (514)
...+...+..|.
T Consensus 900 ~~~~~~~~~~~~~ 912 (917)
T COG0474 900 LLLYIVVSELYKL 912 (917)
T ss_pred HHHHHHHHHHHHH
Confidence 344444454444
No 11
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=1.3e-56 Score=490.80 Aligned_cols=412 Identities=25% Similarity=0.365 Sum_probs=336.6
Q ss_pred cCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccC
Q 010234 4 LDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRD 83 (514)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~ 83 (514)
.+|++.+++++.++++.+.+++++++|+||+++|||+++.++.. .+ ...|+|++|+|+++++|
T Consensus 487 ~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~----------------~~-~~~e~~l~~lGli~~~D 549 (902)
T PRK10517 487 HNGEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGD----------------YQ-RADESDLILEGYIAFLD 549 (902)
T ss_pred cCCCeecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccc----------------cc-cccccCceeeehHhhhC
Confidence 46778899999999999999999999999999999987542210 00 11278999999999999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++||+++++|++|+++||+++|+|||+..+|.++|+++|+... .+++|.+++.+.+++......+..+|+|.+|
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~------~v~~G~el~~l~~~el~~~~~~~~VfAr~sP 623 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDAG------EVLIGSDIETLSDDELANLAERTTLFARLTP 623 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcc------CceeHHHHHhCCHHHHHHHHhhCcEEEEcCH
Confidence 9999999999999999999999999999999999999999532 3678899988877766555566789999999
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAF 243 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~ 243 (514)
+||.++++.+|..++.|+|+|||.||+|+|++||+||||| +++|++|++||+|+.++++..+.+++++||+++.|++++
T Consensus 624 e~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg-~gtdvAkeaADiVLldd~~~~I~~ai~~gR~i~~nI~k~ 702 (902)
T PRK10517 624 MHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GAVDIAREAADIILLEKSLMVLEEGVIEGRRTFANMLKY 702 (902)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC-CcCHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHH
Q 010234 244 IRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVI 323 (514)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~ 323 (514)
+.|.++.|+..++..+++.++..+.|++|.|++|+|+++| +|+++++.+|+++++|++||+. +.+. ....++..
T Consensus 703 i~~~ls~n~~~v~~~~~~~~~~~~~pl~~~qiL~inl~~D-~~~~al~~d~~~~~~m~~p~r~-~~~~----~~~~~~~~ 776 (902)
T PRK10517 703 IKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYD-VSQVAIPFDNVDDEQIQKPQRW-NPAD----LGRFMVFF 776 (902)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HhHHhhcCCCCChhhhcCCCCC-CHHH----HHHHHHHH
Confidence 9999999999998888877775557999999999999999 6899999999999999998872 2211 22334556
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhh
Q 010234 324 GLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKA 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (514)
|.+.+++.++.|++.+.. ++. ... ......
T Consensus 777 g~~~~~~~~~~~~~~~~~---~~~---~~~--------------------------------------------~~~~~~ 806 (902)
T PRK10517 777 GPISSIFDILTFCLMWWV---FHA---NTP--------------------------------------------ETQTLF 806 (902)
T ss_pred HHHHHHHHHHHHHHHHHH---ccc---cch--------------------------------------------hhHhHH
Confidence 666555554444432210 000 000 000113
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhcc--ccccccccccCC--hhhHHHHHH
Q 010234 404 MTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVP--FLAQIFGIVPLS--FNEWLLVLA 479 (514)
Q Consensus 404 ~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip--~~~~~f~~~~l~--~~~w~~~l~ 479 (514)
++..|.+++++|+++.+++|+++. ++|.|++.+.+++.+++++++.+++| +++.+|++.+++ +..|+++++
T Consensus 807 ~~~~F~~~~~~q~~~~~~~R~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 881 (902)
T PRK10517 807 QSGWFVVGLLSQTLIVHMIRTRRI-----PFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAIL 881 (902)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCC-----CcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHH
Confidence 445599999999999999998644 45678899999999999999999999 789999999999 567777666
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcc
Q 010234 480 IAFPVVLIDEVLKFVGRCTNGSQT 503 (514)
Q Consensus 480 ~~~~~~l~~e~~K~~~r~~~~~~~ 503 (514)
+++. +..|+.|....+... ||
T Consensus 882 ~~~~--~~~e~~K~~~~~~~~-~~ 902 (902)
T PRK10517 882 AGYM--TLTQLVKGFYSRRYG-WQ 902 (902)
T ss_pred HHHH--HHHHHHHHHHHHhhc-CC
Confidence 6555 567887765443333 54
No 12
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=4.8e-56 Score=486.61 Aligned_cols=409 Identities=26% Similarity=0.374 Sum_probs=334.2
Q ss_pred ccCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEeccc
Q 010234 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLR 82 (514)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~ 82 (514)
..+|.+.+++++.++++.+.+++++++|+||+++|||+++.++.. . .++.|++++|+|+++++
T Consensus 451 ~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~-~----------------~~~~e~~l~~lGli~l~ 513 (867)
T TIGR01524 451 RFGGAVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEAD-F----------------TKTDEEQLIIEGFLGFL 513 (867)
T ss_pred hcCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCccccc-c----------------cccccCCcEEEEEEEee
Confidence 346778899999999999999999999999999999987653210 0 01126899999999999
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
|++||+++++|++|+++||+++|+|||+..+|.++|+++|+... ..++|.++..+.+.+......+..+|+|.+
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~------~v~~g~~l~~~~~~el~~~~~~~~vfAr~~ 587 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDAN------DFLLGADIEELSDEELARELRKYHIFARLT 587 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCC------CeeecHhhhhCCHHHHHHHhhhCeEEEECC
Confidence 99999999999999999999999999999999999999999642 356788888877666555556678999999
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKA 242 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~ 242 (514)
|+||.++++.+|..++.|+|+|||.||+|+|++||+||||| +++|++|++||+|+.++++..+..++++||++++|+++
T Consensus 588 Pe~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg-~gtdvAk~aADiVLldd~~~~I~~ai~~gR~i~~ni~k 666 (867)
T TIGR01524 588 PMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILK 666 (867)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC-CccHHHHHhCCEEEecCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHH
Q 010234 243 FIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLV 322 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~ 322 (514)
++.|.++.|+..++..+++.++..+.|+++.|++|+|+++| +|+++++.+|+++++|++||+ ++.+.+ ...++.
T Consensus 667 ~i~~~ls~n~~~~~~~~~~~~~~~~~pl~~~qil~inl~~d-~~~~al~~~~~~~~~m~~p~~-~~~~~~----~~~~~~ 740 (867)
T TIGR01524 667 YLKMTASSNFGNVFSVLVASAFIPFLPMLSLHLLIQNLLYD-FSQLTLPWDKMDREFLKKPHQ-WEQKGM----GRFMLC 740 (867)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHhhcCCCCChHhhCCCCC-CChhhH----HHHHHH
Confidence 99999999999988888877776668999999999999999 799999999999999986665 555322 233444
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchh
Q 010234 323 IGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVK 402 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (514)
.|.+.++..+..+++.+... .. .+ . .....
T Consensus 741 ~g~~~~~~~~~~~~~~~~~~---~~----~~-~------------------------------------------~~~~~ 770 (867)
T TIGR01524 741 IGPVSSIFDIATFLLMWFVF---SA----NT-V------------------------------------------EEQAL 770 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cc----cc-h------------------------------------------hhhhH
Confidence 56555544444443322100 00 00 0 00012
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhccc--cccccccccCCh--hhHHHHH
Q 010234 403 AMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPF--LAQIFGIVPLSF--NEWLLVL 478 (514)
Q Consensus 403 ~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip~--~~~~f~~~~l~~--~~w~~~l 478 (514)
.+|..|.+++++|+++.+++|+++. ++|.|++.+.+++++++++++++++|+ ++.+|++.++|+ ..|++++
T Consensus 771 ~~t~~f~~~~~~~~~~~~~~R~~~~-----~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~ 845 (867)
T TIGR01524 771 FQSGWFVVGLLSQTLVVHMIRTEKI-----PFIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAI 845 (867)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCCC-----CcCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHH
Confidence 4678899999999999999998754 345689999999999999999999997 488999998854 4576666
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 010234 479 AIAFPVVLIDEVLKFVGRCT 498 (514)
Q Consensus 479 ~~~~~~~l~~e~~K~~~r~~ 498 (514)
+++++ ++.|+.|.+..+.
T Consensus 846 ~~~~~--~~~e~~k~~~~~~ 863 (867)
T TIGR01524 846 LVGYM--ATMQLVKTFYIRR 863 (867)
T ss_pred HHHHH--HHHHHHHHHHHHh
Confidence 65554 6678887654433
No 13
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=5.7e-51 Score=456.00 Aligned_cols=394 Identities=24% Similarity=0.291 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHH
Q 010234 14 KSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAI 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I 93 (514)
+.++++.+.+++|+++|+||+|+|||++++...... ...+++++|+||+|+|+++++|++||+++++|
T Consensus 598 ~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~------------~~~~r~~~E~~L~flGli~~~d~lr~~~~~~I 665 (1054)
T TIGR01657 598 TVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKA------------QDLSRDAVESNLTFLGFIVFENPLKPDTKEVI 665 (1054)
T ss_pred CCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhh------------hhccHHHHhcCceEEEEEEEecCCCccHHHHH
Confidence 346778899999999999999999999863211100 01234678999999999999999999999999
Q ss_pred HHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccc-------------------------------------------
Q 010234 94 EDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDI------------------------------------------- 130 (514)
Q Consensus 94 ~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~------------------------------------------- 130 (514)
++|+++||+++|+|||+..+|.++|+++|+..++..+
T Consensus 666 ~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1054)
T TIGR01657 666 KELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQVEIPYPLGQDSVE 745 (1054)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccccccccccccCcccccchh
Confidence 9999999999999999999999999999996543211
Q ss_pred ------eecccChHHHhhhhH---HHHHHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 131 ------SLKSLTGKEFMEMHD---KKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 131 ------~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
...+++|+++..+.+ +.......+..+|+|++|+||.++++.+|..++.|+|+|||.||++|||+||+|||
T Consensus 746 ~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GDG~ND~~ALK~AdVGIa 825 (1054)
T TIGR01657 746 DLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGDGANDCGALKQADVGIS 825 (1054)
T ss_pred hhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHhcCccee
Confidence 123556666655422 12222234567999999999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 010234 202 MGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLV 281 (514)
Q Consensus 202 mg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 281 (514)
||++ | +..+||++..++++.++.++|++||+++.++.++++|.+.+++...+..++..+ ...++++.|++|+|++
T Consensus 826 m~~~--d-as~AA~f~l~~~~~~~I~~~I~eGR~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~l~~~Q~l~i~li 900 (1054)
T TIGR01657 826 LSEA--E-ASVAAPFTSKLASISCVPNVIREGRCALVTSFQMFKYMALYSLIQFYSVSILYL--IGSNLGDGQFLTIDLL 900 (1054)
T ss_pred eccc--c-ceeecccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcCccHHHHHHHHH
Confidence 9943 3 357899999999999999999999999999999999999999988666554433 4478999999999999
Q ss_pred hhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccc
Q 010234 282 TDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQ 361 (514)
Q Consensus 282 ~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (514)
++.+++++++.++|.+++|+++| .++++++..+.+++.+++++.+..++.+.+...+.++.+....
T Consensus 901 ~~~~~~l~l~~~~p~~~l~~~~P---~~~l~~~~~~~si~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~----------- 966 (1054)
T TIGR01657 901 LIFPVALLMSRNKPLKKLSKERP---PSNLFSVYILTSVLIQFVLHILSQVYLVFELHAQPWYKPENPV----------- 966 (1054)
T ss_pred HHHHHHHHHHcCCchhhcCCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCC-----------
Confidence 99999999999999999999988 4789999999999999999988887776654433222110000
Q ss_pred cccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHH
Q 010234 362 LTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLL 441 (514)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~ 441 (514)
+ ....+ .....+|++|.+.. .|.+..+.+++. +++|+.+.++|++++
T Consensus 967 ---------------~--------------~~~~~--~~~~~~T~~f~~~~-~~~~~~~~~~~~-g~pf~~~~~~N~~~~ 1013 (1054)
T TIGR01657 967 ---------------D--------------LEKEN--FPNLLNTVLFFVSS-FQYLITAIVNSK-GPPFREPIYKNKPFV 1013 (1054)
T ss_pred ---------------C--------------ccccc--CccHHHHHHHHHHH-HHHHHheEEEcC-CcchhhhHHHhHHHH
Confidence 0 00000 01235788884444 455555556654 889999999999998
Q ss_pred HHHHHHHHHHHH--HHhccccccccccccCCh
Q 010234 442 LAMSVSFGLHFL--ILYVPFLAQIFGIVPLSF 471 (514)
Q Consensus 442 ~~~~~~~~l~~~--~~~ip~~~~~f~~~~l~~ 471 (514)
+++++.+++++. +.++|.++..|++++++.
T Consensus 1014 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1045 (1054)
T TIGR01657 1014 YLLITGLGLLLVLLLDPHPLLGKILQIVPLPQ 1045 (1054)
T ss_pred HHHHHHHHHHHHhhhCCCHHHHhhheeeeCCH
Confidence 888887776653 336788999999999985
No 14
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=2.1e-50 Score=452.87 Aligned_cols=433 Identities=21% Similarity=0.273 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCc-----cccccCCcEEEEEecccCCCCh
Q 010234 13 HKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSN-----YASMECGLTFVGLVGLRDPPRN 87 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~l~~lG~~~~~~~l~~ 87 (514)
++.++.+.+++++|+++|+||+++|||.++++++..+.+++++++..+.++++ ++++|+||+|+|+++++|++++
T Consensus 555 ~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~ 634 (1057)
T TIGR01652 555 NQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQE 634 (1057)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhh
Confidence 45678899999999999999999999999987766555555555554443322 4678999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccce------------------------------------
Q 010234 88 EVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDIS------------------------------------ 131 (514)
Q Consensus 88 ~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~------------------------------------ 131 (514)
+++++|++|+++||++||+|||+.++|..+|+++|+.+.+..+.
T Consensus 635 ~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 714 (1057)
T TIGR01652 635 GVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLGDSGN 714 (1057)
T ss_pred ccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhccCCc
Confidence 99999999999999999999999999999999999976543211
Q ss_pred -ecccChHHHhhhhHHH------HHHhhcCceEEEecChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 132 -LKSLTGKEFMEMHDKK------AHLRQSGGLLFSRAEPRHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 132 -~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
..+++|+++..+.+.. .....+..+++||++|+||.++++.+|.. ++.|+|+|||.||++||++||+||++
T Consensus 715 ~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVGIgi- 793 (1057)
T TIGR01652 715 VALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVGVGI- 793 (1057)
T ss_pred eEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCeeeEe-
Confidence 1355666665443321 12234556799999999999999999998 89999999999999999999999976
Q ss_pred CCCcH--HHHhcccccccCCCchhHHHHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---chhHHHHHH
Q 010234 204 IAGTE--VAKEASDMVLADDDFSTIVSAV-GEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPE---GLIPVQLLW 277 (514)
Q Consensus 204 ~~~~~--~~k~~ad~v~~~~~~~~i~~~i-~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ 277 (514)
.+.+ .++.+||+++.+ +..+..++ .|||++|.|+++.+.|.+++|+.+++.++++.++..++ ++.+++++|
T Consensus 794 -~g~eg~qA~~aaD~~i~~--F~~L~~lll~~GR~~~~r~~~~i~~~~~kn~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 870 (1057)
T TIGR01652 794 -SGKEGMQAVMASDFAIGQ--FRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFYNGFSGQTLYEGWYMVL 870 (1057)
T ss_pred -cChHHHHHHHhhhhhhhh--HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455 689999999974 88888876 89999999999999999999999999999988876654 477889999
Q ss_pred HHHHhhhhhhccccc--CCCCccccCCCCC----CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 010234 278 VNLVTDGPPATALGF--NPPDKDIMKKPPR----RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIG 351 (514)
Q Consensus 278 ~~~i~~~~~~l~l~~--~~~~~~im~~~P~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (514)
+|++++.+|+++++. .++++++|.++|+ .++.+.++.+.++.|++.|+++++.++++.++.+...... .
T Consensus 871 ~n~~~t~lp~~~l~~~d~~~~~~~l~~~P~ly~~~~~~~~~~~~~f~~~~~~~~~~~~ii~~~~~~~~~~~~~~-----~ 945 (1057)
T TIGR01652 871 YNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWMLDGIYQSLVIFFFPMFAYILGDFV-----S 945 (1057)
T ss_pred HHHHHHhHHHHHHHHhcccCCHHHHHhChHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-----c
Confidence 999999999999987 5667889999997 4577889999999999999999988765444333210000 0
Q ss_pred CCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccc
Q 010234 352 DGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLT 431 (514)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~ 431 (514)
+| ...++ ....++.|.++++...+..+...+
T Consensus 946 ~g-------------------------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------- 976 (1057)
T TIGR01652 946 SG-------------------------------------SLDDF-----SSVGVIVFTALVVIVNLKIALEIN------- 976 (1057)
T ss_pred CC-------------------------------------cccch-----hhHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 00 00011 112333444433333322221111
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHhc----cc---cccccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q 010234 432 MPPWVNPWLLLAMSVSFGLHFLILYV----PF---LAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCTNGSQTS 504 (514)
Q Consensus 432 ~~~~~N~~~~~~~~~~~~l~~~~~~i----p~---~~~~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K~~~r~~~~~~~~ 504 (514)
.++|+-++++.+++++.+++..+ +. +...+.....++.+|+.+++.++++++++.+.|++.+.+.|+...
T Consensus 977 ---~wt~~~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~l~~ll~~~~~l~p~~~~~~~~~~~~P~~~~ 1053 (1057)
T TIGR01652 977 ---RWNWISLITIWGSILVWLIFVIVYSSIFPSPAFYKAAPRVMGTFGFWLVLLVIVLISLLPRFTYKAIQRLFRPPDYD 1053 (1057)
T ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 12333344444444444333222 11 111122233468899999999999999999999999999987765
Q ss_pred cc
Q 010234 505 RR 506 (514)
Q Consensus 505 ~~ 506 (514)
+.
T Consensus 1054 ~i 1055 (1057)
T TIGR01652 1054 IV 1055 (1057)
T ss_pred Hh
Confidence 54
No 15
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=1.2e-48 Score=434.58 Aligned_cols=324 Identities=23% Similarity=0.262 Sum_probs=266.2
Q ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCc-----cccccCCcEEEEEecccCCCC
Q 010234 12 DHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSN-----YASMECGLTFVGLVGLRDPPR 86 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~l~~lG~~~~~~~l~ 86 (514)
+++.++++.+++++|+++|+||||+|||.++++++..|.+.++++++.+.++++ .+++|+||+++|+++++|+++
T Consensus 649 ~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr 728 (1178)
T PLN03190 649 NMNVIRATEAHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQ 728 (1178)
T ss_pred cchhHHHHHHHHHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCc
Confidence 345678899999999999999999999999988777676666666666655543 467899999999999999999
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccce-----------------------------------
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDIS----------------------------------- 131 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~----------------------------------- 131 (514)
++++++|++|+++||+++|+|||+..+|..+|+++|+..++....
T Consensus 729 ~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 808 (1178)
T PLN03190 729 QGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTG 808 (1178)
T ss_pred hhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHHHHHHhhhhhhcccccccccccc
Confidence 999999999999999999999999999999999999865542211
Q ss_pred ----------ecccChHHHhhhhHH------HHHHhhcCceEEEecChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhh
Q 010234 132 ----------LKSLTGKEFMEMHDK------KAHLRQSGGLLFSRAEPRHKQEIVRLLKED-GEVVAMTGDGVNDAPALK 194 (514)
Q Consensus 132 ----------~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~ 194 (514)
..+++|..+..+.+. ......+..+++||++|.||.++++.++.. ++.|+|+|||.||++|++
T Consensus 809 ~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv~mIq 888 (1178)
T PLN03190 809 GSSAAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQ 888 (1178)
T ss_pred ccccccCCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchHHHHH
Confidence 134455555544321 122334566799999999999999999987 578999999999999999
Q ss_pred hcCcceeeCCCCcH--HHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---
Q 010234 195 LADIGIAMGIAGTE--VAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEG--- 269 (514)
Q Consensus 195 ~A~igvamg~~~~~--~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 269 (514)
+||||| |..|.| +|+.+||+.+....+..-+-++ |||++|.|+...+.|++|+|++++++++++.++..+++
T Consensus 889 ~AdVGI--GIsG~EG~qA~~aSDfaI~~Fr~L~rLLlv-HGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg~~l 965 (1178)
T PLN03190 889 MADVGV--GISGQEGRQAVMASDFAMGQFRFLVPLLLV-HGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTLTTA 965 (1178)
T ss_pred hcCeee--eecCchhHHHHHhhccchhhhHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999 557777 8899999999877776555555 99999999999999999999999999999999988887
Q ss_pred hhHHHHHHHHHHhhhhhhcccccCCCC--ccccCCCCCC----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 270 LIPVQLLWVNLVTDGPPATALGFNPPD--KDIMKKPPRR----SDDSLISAWILFRYLVIGLYVGIATVGVFIIW 338 (514)
Q Consensus 270 ~~~~~~l~~~~i~~~~~~l~l~~~~~~--~~im~~~P~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (514)
+.++.+.++|++++.+|.++++.-+.| ++...+.|.- +....++.+.++.|++.|+++++.++++.++.
T Consensus 966 y~~~~~~~yN~~fTslPii~~~ifD~dv~~~~l~~~P~LY~~~~~~~~~n~~~F~~w~~~~i~qs~iiff~~~~~ 1040 (1178)
T PLN03190 966 INEWSSVLYSVIYTALPTIVVGILDKDLSRRTLLKYPQLYGAGQRQEAYNSKLFWLTMIDTLWQSAVVFFVPLFA 1040 (1178)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHhCcHhhhhhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999874444 4455555643 35567889999999999999998876554443
No 16
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=3.2e-45 Score=396.48 Aligned_cols=355 Identities=26% Similarity=0.355 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHH
Q 010234 13 HKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQA 92 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~ 92 (514)
++.++++.+.+++++++|+||+++|||. .|++++|+|+++++|++||+++++
T Consensus 399 ~~~~~~~~~~~~~~~~~G~rvl~vA~~~----------------------------~e~~l~~~Gli~l~Dp~R~~a~~a 450 (755)
T TIGR01647 399 KEIEEKVEEKVDELASRGYRALGVARTD----------------------------EEGRWHFLGLLPLFDPPRHDTKET 450 (755)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEEEc----------------------------CCCCcEEEEEeeccCCChhhHHHH
Confidence 3456778889999999999999999983 147899999999999999999999
Q ss_pred HHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHH
Q 010234 93 IEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRL 172 (514)
Q Consensus 93 I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~ 172 (514)
|++|+++||+++|+|||+..+|.++|+++|+.+.... .....++.+.+.+.+++......+..+|+|.+|+||.++++.
T Consensus 451 I~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~ 529 (755)
T TIGR01647 451 IERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYT-ADVLLKGDNRDDLPSGELGEMVEDADGFAEVFPEHKYEIVEI 529 (755)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCcC-HHHhcCCcchhhCCHHHHHHHHHhCCEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999999652100 001112222233333333333344669999999999999999
Q ss_pred HhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 010234 173 LKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNI 252 (514)
Q Consensus 173 l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~ 252 (514)
+|..++.|+|+|||.||.|+|++||+||||| +++|.+|++||+++.++++..+..++++||++++|+++++.|.++.|+
T Consensus 530 lq~~G~~VamvGDGvNDapAL~~AdVGIAm~-~gtdvAkeaADivLl~d~l~~I~~ai~~gR~~~~ni~k~i~~~~~~n~ 608 (755)
T TIGR01647 530 LQKRGHLVGMTGDGVNDAPALKKADVGIAVA-GATDAARSAADIVLTEPGLSVIVDAILESRKIFQRMKSYVIYRIAETI 608 (755)
T ss_pred HHhcCCEEEEEcCCcccHHHHHhCCeeEEec-CCcHHHHHhCCEEEEcCChHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Q 010234 253 GEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATV 332 (514)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (514)
..++..++..++.. .+++|+|++|+|++.+. ++++++++++++. ++|. ...+. ..+...+..|.+.++.++
T Consensus 609 ~~~~~~~~~~l~~~-~~l~~~~il~~~l~~d~-~~~~l~~~~~~~~---~~p~---~~~~~-~~~~~~~~~g~~~~~~~~ 679 (755)
T TIGR01647 609 RIVFFFGLLILILN-FYFPPIMVVIIAILNDG-TIMTIAYDNVKPS---KLPQ---RWNLR-EVFTMSTVLGIYLVISTF 679 (755)
T ss_pred HHHHHHHHHHHHhC-cchhHHHHHHHHHHHhH-hHhhccCCCCCCC---CCCC---ccchH-HHHHHHHHHHHHHHHHHH
Confidence 98776666554322 34999999999999996 6999999988752 3333 33333 444556677877777666
Q ss_pred HHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHH
Q 010234 333 GVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLV 412 (514)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv 412 (514)
+++++.+....+... .+ .......++|++|..++
T Consensus 680 ~~~~~~~~~~~~~~~----~~------------------------------------------~~~~~~~~~t~~f~~~~ 713 (755)
T TIGR01647 680 LLLAIALDTSFFIDK----FG------------------------------------------LQLLHGNLQSLIYLQVS 713 (755)
T ss_pred HHHHHHHhcccchhc----cc------------------------------------------ccccHhhhHHHHHHHHH
Confidence 655543310000000 00 00001347899999999
Q ss_pred HHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHH
Q 010234 413 AIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLIL 455 (514)
Q Consensus 413 ~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~ 455 (514)
+.|.++.+++|+++.+.+. +.|+++.++.++..++..++.
T Consensus 714 ~~~~~~~~~~r~~~~~~~~---~p~~~l~~~~~~~~~~~~~~~ 753 (755)
T TIGR01647 714 ISGQATIFVTRTHGFFWSE---RPGKLLFIAFVIAQIIATFIA 753 (755)
T ss_pred HHHHHHHheeccCCCCccc---CCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999987655432 357777777777776666544
No 17
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=1.6e-49 Score=427.23 Aligned_cols=439 Identities=21% Similarity=0.274 Sum_probs=321.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCc-----cccccCCcEEEEEecccCCCCh
Q 010234 13 HKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSN-----YASMECGLTFVGLVGLRDPPRN 87 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~l~~lG~~~~~~~l~~ 87 (514)
++.+++..++++++|.+|+||||+|||++++++++.|.+++++|.+++.++++ ++.+|+||+++|..++||++++
T Consensus 575 ~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQd 654 (1151)
T KOG0206|consen 575 EKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQD 654 (1151)
T ss_pred hHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhcc
Confidence 34567777899999999999999999999999999999999999999987765 8899999999999999999999
Q ss_pred hHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceec----------------------------------
Q 010234 88 EVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLK---------------------------------- 133 (514)
Q Consensus 88 ~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~---------------------------------- 133 (514)
+++++|++|++||||+|++|||..++|..++..|++.+.+......
T Consensus 655 gVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~~m~~i~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 734 (1151)
T KOG0206|consen 655 GVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQDMKLIIINTETSEELSSLDATAALKETLLRKFTEELEEAKL 734 (1151)
T ss_pred CchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCCCceEEEEecCChhhhcchhhHHHHHHHHHHhhhHHHHHHhh
Confidence 9999999999999999999999999999999999987654332211
Q ss_pred ---------ccChHHHhhhhHH------HHHHhhcCceEEEecChhhHHHHHHHHhh-CCCEEEEEcCCcCCHHhhhhcC
Q 010234 134 ---------SLTGKEFMEMHDK------KAHLRQSGGLLFSRAEPRHKQEIVRLLKE-DGEVVAMTGDGVNDAPALKLAD 197 (514)
Q Consensus 134 ---------~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~p~~k~~iv~~l~~-~~~~v~~iGDg~ND~~ml~~A~ 197 (514)
+++|+.+....+. ......+..+++||++|.||+.+++..+. .+..++|||||+||++|++.||
T Consensus 735 ~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~Ah 814 (1151)
T KOG0206|consen 735 EHSEKPFALVIDGKTLAYALEDELRKKFLELAKRCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAH 814 (1151)
T ss_pred ccCcCCceEEEECHHHHhhhCchhhHHHHHHHHhcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCC
Confidence 1222222111111 12234567899999999999999999974 5678999999999999999999
Q ss_pred cceeeCCCCcH--HHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc---hhH
Q 010234 198 IGIAMGIAGTE--VAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEG---LIP 272 (514)
Q Consensus 198 igvamg~~~~~--~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 272 (514)
+||.+ +|.| .|..++|+-+....+..-+-++ |||++|.|+.+++.|++|+|+.+.+.+|++.++..+++ +.+
T Consensus 815 VGVGI--sG~EGmQAvmsSD~AIaqFrfL~rLLLV-HGhW~Y~R~a~~ilyfFYKNi~f~~~~fwy~f~~gfSgq~~yd~ 891 (1151)
T KOG0206|consen 815 VGVGI--SGQEGMQAVMSSDFAIAQFRFLERLLLV-HGHWSYIRLAKMILYFFYKNIAFTFTLFWYQFFNGFSGQTLYDD 891 (1151)
T ss_pred cCeee--ccchhhhhhhcccchHHHHHHHhhhhee-ecceeHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Confidence 99955 4555 7788899999988888888777 99999999999999999999999999999999888765 778
Q ss_pred HHHHHHHHHhhhhhhcccccCCC--CccccCCCCCCCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010234 273 VQLLWVNLVTDGPPATALGFNPP--DKDIMKKPPRRSD----DSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLG 346 (514)
Q Consensus 273 ~~~l~~~~i~~~~~~l~l~~~~~--~~~im~~~P~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (514)
+++.++|++++.+|.+++|.-+. +.+.+.+.|..+. ...++.+.++.+++.|++++++++++.+..+... ...
T Consensus 892 ~~l~lyNv~FTSlPvi~lGvfdqDvsa~~~l~~P~LY~~g~~~~~f~~~~f~~~~~~g~~~sli~Ff~~~~~~~~~-~~~ 970 (1151)
T KOG0206|consen 892 WYLSLYNVLFTSLPVIVLGVFDQDVSAETLLRFPELYQRGQLNLLFNWKRFWGWMLDGFYQSLVIFFLPYLVFEEQ-AVT 970 (1151)
T ss_pred eEEEEEeEEeecCchhheeecccCCCHHHHhhCCcchhhhhhccccchHHHHHHHHHHHHhheeeeeeeHhhheee-eec
Confidence 88999999999999999998444 4556667776543 3456677888888899998887765544433211 000
Q ss_pred ccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCC
Q 010234 347 INLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSED 426 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~ 426 (514)
.+| ...+++..|...++.+.+++.+. +. ..
T Consensus 971 ----~~G-------------------------------------~~~d~~~~G~~~~T~~Vivv~~~--ia-------L~ 1000 (1151)
T KOG0206|consen 971 ----SNG-------------------------------------LTADYWTLGTTVFTIIVIVVNLK--IA-------LE 1000 (1151)
T ss_pred ----cCC-------------------------------------CcCChhhccceEEEEEEEEEEee--ee-------ee
Confidence 011 11122222222222222211111 00 01
Q ss_pred CCccccCCCcchHH-HHHHHHHHHHHHHHHh-ccc------cccccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010234 427 GSLLTMPPWVNPWL-LLAMSVSFGLHFLILY-VPF------LAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFVGRCT 498 (514)
Q Consensus 427 ~s~~~~~~~~N~~~-~~~~~~~~~l~~~~~~-ip~------~~~~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K~~~r~~ 498 (514)
.+.|. |.|+.. |.++++-+++.+++.. .|. +..++.....++.+|+.+++.++.+++++.+.|.+.+.+
T Consensus 1001 ~~ywT---~i~~i~i~gSi~~~f~f~~iy~~~~~~~~~~~~~~~~~~~~~~~p~fWl~~ll~~v~~Llp~~~~~~l~~~~ 1077 (1151)
T KOG0206|consen 1001 TSYWT---WINHIVIWGSILLWFVFLFIYSELTPAISTPDPFYGVAEHLLSSPSFWLTLLLTVVAALLPDFVYKSLQRTF 1077 (1151)
T ss_pred ehhee---HHHHHHHHHHHHHHHHHHHHHhccccccCCCccHHHHHHHHhcCchHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 11221 122222 2223333322222211 121 122333444678899999999999999999999999999
Q ss_pred CCCccccccc
Q 010234 499 NGSQTSRRKS 508 (514)
Q Consensus 499 ~~~~~~~~~~ 508 (514)
+|+...+.|+
T Consensus 1078 ~Pt~~~~i~~ 1087 (1151)
T KOG0206|consen 1078 FPTDHDIIQE 1087 (1151)
T ss_pred CCcHHHHHHH
Confidence 9998666443
No 18
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=350.53 Aligned_cols=418 Identities=22% Similarity=0.287 Sum_probs=298.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHH
Q 010234 15 SRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIE 94 (514)
Q Consensus 15 ~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~ 94 (514)
..+.+.+.++.++.+|+||+++|+|.|... .+.+ .....++.+|+||+|+|++.++|+++++++.+|+
T Consensus 648 vP~dy~evl~~Yt~~GfRVIAlA~K~L~~~---~~~~---------~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~ 715 (1140)
T KOG0208|consen 648 VPADYQEVLKEYTHQGFRVIALASKELETS---TLQK---------AQKLSRDTVESNLEFLGLIVMENKLKEETKRVID 715 (1140)
T ss_pred CCccHHHHHHHHHhCCeEEEEEecCccCcc---hHHH---------HhhccHhhhhccceeeEEEEeecccccccHHHHH
Confidence 367899999999999999999999998653 1111 1123567889999999999999999999999999
Q ss_pred HHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcccee------------------------------------------
Q 010234 95 DCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISL------------------------------------------ 132 (514)
Q Consensus 95 ~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~------------------------------------------ 132 (514)
+|++++||.+|+|||+..||..+|++||+..+...++.
T Consensus 716 eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~~~~~~~~~~~~~~~~~ 795 (1140)
T KOG0208|consen 716 ELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFLDPKEPDPDLASVKLSL 795 (1140)
T ss_pred HHHhhcceEEEEcCCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccCCCCccCccccCCccCh
Confidence 99999999999999999999999999999655433321
Q ss_pred ---------cccChHHHhhhhH---HHHHHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 133 ---------KSLTGKEFMEMHD---KKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 133 ---------~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
.+++|+.+..+.. +.......+..+|+|++|+||.++++.+|+.+..|.++|||+||+.+||+||+||
T Consensus 796 d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCGDGANDCgALKaAdvGI 875 (1140)
T KOG0208|consen 796 DVLSEKDYHLAMSGKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCGDGANDCGALKAADVGI 875 (1140)
T ss_pred hhhccceeEEEecCchhHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecCCCcchhhhhhhcccCc
Confidence 1222222222211 1111122356799999999999999999999999999999999999999999999
Q ss_pred eeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 010234 201 AMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNL 280 (514)
Q Consensus 201 amg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 280 (514)
+.+ ...|.-+|.+.....+..++.++|+|||+.+...-.+++|+..+++......+ .++.....++..|.+++++
T Consensus 876 SLS---eaEASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkYMalYs~iqFisv~--~LY~~~~nl~D~Qfl~iDL 950 (1140)
T KOG0208|consen 876 SLS---EAEASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKYMALYSAIQFISVV--FLYLINSNLGDLQFLFIDL 950 (1140)
T ss_pred chh---hhhHhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhh--eeeeecccccchhhhhhHH
Confidence 887 33446679999999999999999999999999999999999988877655443 3334456799999999999
Q ss_pred HhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccc
Q 010234 281 VTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYS 360 (514)
Q Consensus 281 i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (514)
+...+.+++++..++..++-..+| +..+++.+.+...+.+-++..+.....+++...++++.+.
T Consensus 951 lii~pia~~m~~~~a~~~L~~~rP---~~~L~s~~~~~~l~~q~vli~l~q~i~~l~~~~qpw~~pp------------- 1014 (1140)
T KOG0208|consen 951 LIITPIAVMMSRFDASDKLFPKRP---PTNLLSKKILVPLLLQIVLICLVQWILTLIVEPQPWYEPP------------- 1014 (1140)
T ss_pred HHHHHHHHHHccCcHHHHhcCCCC---CccccccchhhhhHHHHHHHHHHHHhhheeeccccceecC-------------
Confidence 999999999999999988777666 6778888888877777776666655555544444333321
Q ss_pred ccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHH
Q 010234 361 QLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWL 440 (514)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~ 440 (514)
+|.. + ++.. ....|..|.+..+..+++. ..-..+++|+.+.|+|+.+
T Consensus 1015 ---------~~~~---~------------~nt~-------s~~~T~lF~vS~fqYi~~a--~v~S~g~pfr~pl~~n~~f 1061 (1140)
T KOG0208|consen 1015 ---------NPQV---D------------DNTQ-------SSDNTSLFFVSSFQYIFIA--LVLSKGSPFRRPLWKNVLF 1061 (1140)
T ss_pred ---------CCCc---C------------cccc-------cceeeEeeehhHHHHHHhh--eeeccCCcccCchhcCcee
Confidence 1100 0 0000 0112223333333333322 2334688999999999998
Q ss_pred HHHHHHHHHHHHHHHhccccc---cccccccCChhhH-HHHHHHHHHHHHHHHHHHHHhhcc
Q 010234 441 LLAMSVSFGLHFLILYVPFLA---QIFGIVPLSFNEW-LLVLAIAFPVVLIDEVLKFVGRCT 498 (514)
Q Consensus 441 ~~~~~~~~~l~~~~~~ip~~~---~~f~~~~l~~~~w-~~~l~~~~~~~l~~e~~K~~~r~~ 498 (514)
...+.+..+..+.++.++... ..+.+++.+-+.. ++.+...+..+....+.+.+.+.+
T Consensus 1062 ~~~i~~i~~~~i~l~~~~~~~~~~~l~~~t~~~~~~~~fii~~~~~~~~~~~~~~~~~~~~~ 1123 (1140)
T KOG0208|consen 1062 KVFITVIILSTIYLLFVNYLFIEWKLLQLTYIPTTFDRFIILLVVISYFALNYIQPSVGRML 1123 (1140)
T ss_pred eeehhhHHhhhhhhhhccccchhhhhhceeccCcchhHHHHHHHHHHHHHHHHhhhhhhchh
Confidence 776666666555555554322 3466677666333 333434444444455554444433
No 19
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=341.08 Aligned_cols=416 Identities=19% Similarity=0.235 Sum_probs=309.1
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCc------cccccCCcEEEEEecccCCCChhHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSN------YASMECGLTFVGLVGLRDPPRNEVHQ 91 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~l~~lG~~~~~~~l~~~~~~ 91 (514)
.++|...+||.+|+|||++|.|.|++++++.+.+.++.|+.++.|+.. ...+|+||.++|+.|.||+++++++.
T Consensus 586 WleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dVk~ 665 (1051)
T KOG0210|consen 586 WLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDDVKP 665 (1051)
T ss_pred hhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhhhHh
Confidence 466789999999999999999999999999888889999998887764 33789999999999999999999999
Q ss_pred HHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccce------------------------ecccChHHHhhhh---
Q 010234 92 AIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDIS------------------------LKSLTGKEFMEMH--- 144 (514)
Q Consensus 92 ~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~------------------------~~~~~~~~~~~~~--- 144 (514)
+++.||++||++||+|||..++|.-+|+..++.+.++.+. ..+++|+.+.-..
T Consensus 666 tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yy 745 (1051)
T KOG0210|consen 666 TLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVIDGESLEFCLKYY 745 (1051)
T ss_pred HHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEcCchHHHHHHHH
Confidence 9999999999999999999999999999999977665431 2233333322111
Q ss_pred --HHHHHHhhcCceEEEecChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCcceeeCCCCcH--HHHhccccccc
Q 010234 145 --DKKAHLRQSGGLLFSRAEPRHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADIGIAMGIAGTE--VAKEASDMVLA 219 (514)
Q Consensus 145 --~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~--~~k~~ad~v~~ 219 (514)
+..+.......+++||++|+||+++++.+|+. +..|+|||||.||+.|+++||+||.+ .|.| ++.-+||+.+.
T Consensus 746 e~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~A~~GiGI--~gkEGkQASLAADfSIt 823 (1051)
T KOG0210|consen 746 EDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQAADVGIGI--VGKEGKQASLAADFSIT 823 (1051)
T ss_pred HHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheeecccceee--ecccccccchhccccHH
Confidence 11123345678999999999999999999875 68999999999999999999999954 3333 56788999987
Q ss_pred CCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHH---HHHHHHHhhhhhhcccccC-CC
Q 010234 220 DDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQ---LLWVNLVTDGPPATALGFN-PP 295 (514)
Q Consensus 220 ~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~i~~~~~~l~l~~~-~~ 295 (514)
....-+-+-+. |||.+|.|..+.-+|.+...+....++.+++....+.|...+| ++.+..+++++|.+++.++ +.
T Consensus 824 qF~Hv~rLLl~-HGR~SYkrsa~laqfViHRGL~Is~~Qavfs~v~yF~~V~LyqG~LmvgysT~YTmlPVFSlv~d~Dv 902 (1051)
T KOG0210|consen 824 QFSHVSRLLLW-HGRNSYKRSAKLAQFVIHRGLIISTMQAVFSSVFYFAPVALYQGFLMVGYSTCYTMLPVFSLVLDRDV 902 (1051)
T ss_pred HHHHHHHHhhc-cccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcchHHhhhhHHHHHHHHHHHhhhheeeecccc
Confidence 66555555444 9999999999999999999999988888888777777755444 6777889999999999984 33
Q ss_pred CccccCCCCCC----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCC
Q 010234 296 DKDIMKKPPRR----SDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSW 371 (514)
Q Consensus 296 ~~~im~~~P~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (514)
.++.-...|.- ...+.++.+.|+.|.+.+++++..+...+++.+.. .|
T Consensus 903 ~~~~a~~yPELYKeL~kgr~lSYKtF~iwvLISiYQG~vim~g~~~l~~~-ef--------------------------- 954 (1051)
T KOG0210|consen 903 SESLAVLYPELYKELTKGRSLSYKTFFIWVLISIYQGSVIMYGALLLFDT-EF--------------------------- 954 (1051)
T ss_pred cHHHHhhhHHHHHHHhcCCccchhhhhhhhhHHHHcccHHHHHHHHHhhh-hh---------------------------
Confidence 33333344431 35667888889999999999987765433332210 00
Q ss_pred CCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHH
Q 010234 372 GNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLH 451 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~ 451 (514)
....++.|.++++..+.-..-.. ..++|..+++-+++++++
T Consensus 955 -----------------------------~~ivaisFtaLi~tELiMVaLtv----------~tw~~~m~vae~lsL~~Y 995 (1051)
T KOG0210|consen 955 -----------------------------IHIVAISFTALILTELIMVALTV----------RTWHWLMVVAELLSLALY 995 (1051)
T ss_pred -----------------------------eEeeeeeeHHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHHHH
Confidence 11234555555554443221111 113566777777777766
Q ss_pred HHHHhccccccccccccCCh-hhHHHHHHHHHHHHHHHHHHHHHhhccCCCcccc
Q 010234 452 FLILYVPFLAQIFGIVPLSF-NEWLLVLAIAFPVVLIDEVLKFVGRCTNGSQTSR 505 (514)
Q Consensus 452 ~~~~~ip~~~~~f~~~~l~~-~~w~~~l~~~~~~~l~~e~~K~~~r~~~~~~~~~ 505 (514)
+ +.+|.+.+.|....++. .+.+-+.++.++.+++..+.|+..|++.|...-|
T Consensus 996 i--vsl~~l~~yfd~~f~~~~~Fl~k~t~I~~vS~Lpl~~~K~lrrk~sPpSYaK 1048 (1051)
T KOG0210|consen 996 I--VSLAFLHEYFDRYFILTYVFLWKVTVITLVSCLPLYFIKALRRKLSPPSYAK 1048 (1051)
T ss_pred H--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Confidence 5 35566777776655543 3333345567788889999999999988776544
No 20
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.1e-32 Score=289.71 Aligned_cols=181 Identities=28% Similarity=0.432 Sum_probs=169.0
Q ss_pred HHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHH
Q 010234 19 ILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRA 98 (514)
Q Consensus 19 ~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~ 98 (514)
+.+..++++++|+|+++++ .|++++|+++++|++||+++++|++||+
T Consensus 409 ~~~~~~~~a~~G~~~l~v~---------------------------------~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~ 455 (673)
T PRK14010 409 LDALVKGVSKKGGTPLVVL---------------------------------EDNEILGVIYLKDVIKDGLVERFRELRE 455 (673)
T ss_pred HHHHHHHHHhCCCeEEEEE---------------------------------ECCEEEEEEEeecCCcHHHHHHHHHHHH
Confidence 5566778999999999865 2457999999999999999999999999
Q ss_pred cCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhCCC
Q 010234 99 AGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGE 178 (514)
Q Consensus 99 ~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~ 178 (514)
+||+++|+|||+..+|.++|+++|+++ +++|.+|++|.++++.+|.+++
T Consensus 456 ~GI~vvMiTGDn~~TA~aIA~elGI~~-------------------------------v~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 456 MGIETVMCTGDNELTAATIAKEAGVDR-------------------------------FVAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred CCCeEEEECCCCHHHHHHHHHHcCCce-------------------------------EEcCCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999952 7899999999999999999999
Q ss_pred EEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 179 VVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 258 (514)
Q Consensus 179 ~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~ 258 (514)
.|+|+|||.||.|+|++||+||||| ++++.+|++||+|+.++++..+.+++++||++|.|+++.+.|.+..|+...+..
T Consensus 505 ~VaMtGDGvNDAPALa~ADVGIAMg-sGTdvAkeAADiVLldd~ls~Iv~av~~gR~i~~n~~~~~~f~~~~~~~~~~~i 583 (673)
T PRK14010 505 IVAMTGDGTNDAPALAEANVGLAMN-SGTMSAKEAANLIDLDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDIAKYFAI 583 (673)
T ss_pred EEEEECCChhhHHHHHhCCEEEEeC-CCCHHHHHhCCEEEcCCCHHHHHHHHHHHHHHHHHHHHHHheeeeccHHHHHHH
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999988877
Q ss_pred HHHHhh
Q 010234 259 FFTAAL 264 (514)
Q Consensus 259 ~~~~~~ 264 (514)
+...+.
T Consensus 584 ~~a~~~ 589 (673)
T PRK14010 584 LPAMFM 589 (673)
T ss_pred HHHHHH
Confidence 665544
No 21
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-30 Score=260.88 Aligned_cols=423 Identities=19% Similarity=0.202 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHH
Q 010234 14 KSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAI 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I 93 (514)
+....+++...+++.+|-|||+++||++..-...+ ....+++++|+||+|.|++.+.-++++|++++|
T Consensus 617 dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q------------~rd~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I 684 (1160)
T KOG0209|consen 617 DVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQ------------VRDLKREDVESDLTFAGFLIFSCPLKPDSKKTI 684 (1160)
T ss_pred hCchhHHHHHHHHhhccceEEEEecccccccchhh------------hhhhhhhhhhhcceeeeeEEEeCCCCccHHHHH
Confidence 34566888899999999999999999975211000 112457789999999999999999999999999
Q ss_pred HHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCc------------cc-------------------------eecccC
Q 010234 94 EDCRAAGIRVMVITGDNKNTAEAICREIGVFECNE------------DI-------------------------SLKSLT 136 (514)
Q Consensus 94 ~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~------------~~-------------------------~~~~~~ 136 (514)
+.|++.+++++|+|||++.+|.++|+++|+..+.. ++ +..+++
T Consensus 685 ~el~~SSH~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~~~~l~~~~dlcit 764 (1160)
T KOG0209|consen 685 KELNNSSHRVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKKKTLLAETHDLCIT 764 (1160)
T ss_pred HHHhccCceEEEEeCCCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCCccchhhhhhhhhhcc
Confidence 99999999999999999999999999999854311 11 112334
Q ss_pred hHHHhhhhHHHH-HHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHH-----
Q 010234 137 GKEFMEMHDKKA-HLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVA----- 210 (514)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~----- 210 (514)
|+.+..+..... ........+|+|..|.||..++..++..|..++|+|||.||+.+||+|++|||.-+++.+..
T Consensus 765 G~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVALL~~~~e~~~~~~~ 844 (1160)
T KOG0209|consen 765 GSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNNPEESKKDKEK 844 (1160)
T ss_pred hhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceehhcCChhhhhHHhh
Confidence 444444433321 12233578999999999999999999999999999999999999999999999865443210
Q ss_pred -----------------------------------------------------------------HhcccccccCCCchh
Q 010234 211 -----------------------------------------------------------------KEASDMVLADDDFST 225 (514)
Q Consensus 211 -----------------------------------------------------------------k~~ad~v~~~~~~~~ 225 (514)
.-+|.+.....+.++
T Consensus 845 ~~~~k~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~i~kdlee~~~~p~vKLGDASiAAPFTsK~asv~~ 924 (1160)
T KOG0209|consen 845 RRKKKLKLEPAKQTIAANRQNSPRPPVPPAERHNPHAEKTRERLKKILKDLEEDKGDPLVKLGDASIAAPFTSKLASVSS 924 (1160)
T ss_pred hhhhccccCchhhHHHhhhccCCCCCCCCccccChhHHHHHHHHHHHHHHHhhcccCccccccccccccccccccchHHH
Confidence 013334444446778
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCC
Q 010234 226 IVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPR 305 (514)
Q Consensus 226 i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~ 305 (514)
|.+.|++||+.+.+.-+++.......++....+-+..+-| --++..|...-.+++- .--+.++..+|-+.+.++.|
T Consensus 925 v~~IIrQGRctLVtTlQMfKILALN~LisAYslSvlyldG--VKfgD~QaTisGlLla-~cFlfISrskPLetLSkeRP- 1000 (1160)
T KOG0209|consen 925 VTHIIRQGRCTLVTTLQMFKILALNCLISAYSLSVLYLDG--VKFGDTQATISGLLLA-ACFLFISRSKPLETLSKERP- 1000 (1160)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ceecchhHhHHHHHHH-HHHhheecCCchhhHhhcCC-
Confidence 9999999999999998888876555444433332111112 1256666544433322 12234556777788888776
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcc
Q 010234 306 RSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQV 385 (514)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (514)
..+++|...+.+.+.+..++... +++.... .+.-. .. .+. .+.
T Consensus 1001 --~~nIFN~Y~i~svl~QFaVH~~t----LvYi~~~-a~~~~---p~--------------~~~------vdl------- 1043 (1160)
T KOG0209|consen 1001 --LPNIFNVYIILSVLLQFAVHIAT----LVYITGE-AYKLE---PP--------------EEK------VDL------- 1043 (1160)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHH----hhhhHHH-HHhcC---Cc--------------ccc------cCh-------
Confidence 56688877776666666655322 1111110 00000 00 000 000
Q ss_pred cccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHh--ccccccc
Q 010234 386 FTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILY--VPFLAQI 463 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~--ip~~~~~ 463 (514)
...|... ...+++.+ .-+..|+... .+...+.+|+.+...|+.+..+++++.++.+.+.. .|-+..-
T Consensus 1044 -------~~~F~Ps-llNt~vyi-isl~~QvsTF--AVNY~G~PF~Esl~eNK~l~y~ll~~~~~~~~l~tg~~peLn~~ 1112 (1160)
T KOG0209|consen 1044 -------EEKFSPS-LLNTTVYI-ISLAQQVSTF--AVNYQGRPFRESLRENKGLLYGLLGSAGVIIALATGSSPELNEK 1112 (1160)
T ss_pred -------hcccChh-hhhhHHHH-HHHHHHHHHh--hhhccCcchhhhhhhccchHHHHHHHHHHHHHHHhccChhHHhh
Confidence 0111111 33444444 3344444432 23446889999999999999888887776655443 3457778
Q ss_pred cccccCChhhHH----HHHHHHHHHHHHHHHHHHHhhccCC
Q 010234 464 FGIVPLSFNEWL----LVLAIAFPVVLIDEVLKFVGRCTNG 500 (514)
Q Consensus 464 f~~~~l~~~~w~----~~l~~~~~~~l~~e~~K~~~r~~~~ 500 (514)
|.+++++-.+-. +.++-.+++++++.+.|++....++
T Consensus 1113 ~~lV~mp~~fk~~ll~~l~lD~v~c~~~er~~~f~f~~~k~ 1153 (1160)
T KOG0209|consen 1113 FELVDMPQDFKIKLLAVLVLDFVLCYLVERVLKFFFGDHKP 1153 (1160)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 888888754422 2333466788889998888774443
No 22
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.97 E-value=4.6e-30 Score=270.08 Aligned_cols=171 Identities=34% Similarity=0.515 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHH
Q 010234 17 NLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDC 96 (514)
Q Consensus 17 ~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l 96 (514)
+++.+.+++++++|.|++++|+ |++++|+++++|++||+++++|++|
T Consensus 411 ~~~~~~~~~~a~~G~~~l~va~---------------------------------~~~~lG~i~l~D~~R~~~~eai~~L 457 (679)
T PRK01122 411 AELDAAVDEVARKGGTPLVVAE---------------------------------DNRVLGVIYLKDIVKPGIKERFAEL 457 (679)
T ss_pred HHHHHHHHHHHhCCCcEEEEEE---------------------------------CCeEEEEEEEeccCchhHHHHHHHH
Confidence 5677788899999999999994 2478999999999999999999999
Q ss_pred HHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhC
Q 010234 97 RAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKED 176 (514)
Q Consensus 97 ~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~ 176 (514)
+++||+++|+|||++.+|.++|+++|+++ +++|.+|++|.++++.+|..
T Consensus 458 r~~GI~vvMiTGDn~~TA~aIA~elGId~-------------------------------v~A~~~PedK~~iV~~lQ~~ 506 (679)
T PRK01122 458 RKMGIKTVMITGDNPLTAAAIAAEAGVDD-------------------------------FLAEATPEDKLALIRQEQAE 506 (679)
T ss_pred HHCCCeEEEECCCCHHHHHHHHHHcCCcE-------------------------------EEccCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999942 78999999999999999999
Q ss_pred CCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 010234 177 GEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNI 252 (514)
Q Consensus 177 ~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~ 252 (514)
++.|+|+|||.||.|+|++||+||||| ++++.+|++||+|+.++|+..+.++++.||+..-+--..-.|++..-+
T Consensus 507 G~~VaMtGDGvNDAPALa~ADVGIAMg-sGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~tr~~~~~f~~~n~~ 581 (679)
T PRK01122 507 GRLVAMTGDGTNDAPALAQADVGVAMN-SGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLMTRGALTTFSIANDV 581 (679)
T ss_pred CCeEEEECCCcchHHHHHhCCEeEEeC-CCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHhhhHhhhhhhHHHHH
Confidence 999999999999999999999999999 999999999999999999999999999999998554444556555433
No 23
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.96 E-value=4.7e-28 Score=254.33 Aligned_cols=178 Identities=33% Similarity=0.504 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHH
Q 010234 17 NLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDC 96 (514)
Q Consensus 17 ~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l 96 (514)
+.+.+.+++++++|.|++++|+. .+++|+++++|++||+++++|++|
T Consensus 412 ~~~~~~~~~~a~~G~r~l~va~~---------------------------------~~~lG~i~l~D~~Rp~a~eaI~~l 458 (675)
T TIGR01497 412 TDLDQAVDQVARQGGTPLVVCED---------------------------------NRIYGVIYLKDIVKGGIKERFAQL 458 (675)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEC---------------------------------CEEEEEEEecccchhHHHHHHHHH
Confidence 45677888999999999999953 278999999999999999999999
Q ss_pred HHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhC
Q 010234 97 RAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKED 176 (514)
Q Consensus 97 ~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~ 176 (514)
+++|++++|+|||+..++.++|+++|+++ ++++++|++|.++++.+|..
T Consensus 459 ~~~Gi~v~miTGD~~~ta~~iA~~lGI~~-------------------------------v~a~~~PedK~~~v~~lq~~ 507 (675)
T TIGR01497 459 RKMGIKTIMITGDNRLTAAAIAAEAGVDD-------------------------------FIAEATPEDKIALIRQEQAE 507 (675)
T ss_pred HHCCCEEEEEcCCCHHHHHHHHHHcCCCE-------------------------------EEcCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999942 78899999999999999999
Q ss_pred CCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 010234 177 GEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVA 256 (514)
Q Consensus 177 ~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~ 256 (514)
++.|+|+|||.||.|+|++||+|+||| ++++.+|++||+++.++|+..+.++++.||+++-+-.....|++...++..+
T Consensus 508 g~~VamvGDG~NDapAL~~AdvGiAm~-~gt~~akeaadivLldd~~s~Iv~av~~GR~~~~t~~~~~t~~~~~~~~~~~ 586 (675)
T TIGR01497 508 GKLVAMTGDGTNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTFSIANDVAKYF 586 (675)
T ss_pred CCeEEEECCCcchHHHHHhCCEeEEeC-CCCHHHHHhCCEEECCCCHHHHHHHHHHHHHHHHHHHHHheeeecccHHHHH
Confidence 999999999999999999999999999 8999999999999999999999999999999999888888888877776554
Q ss_pred HHH
Q 010234 257 SIF 259 (514)
Q Consensus 257 ~~~ 259 (514)
..+
T Consensus 587 ~~~ 589 (675)
T TIGR01497 587 AII 589 (675)
T ss_pred HHH
Confidence 443
No 24
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=249.42 Aligned_cols=158 Identities=42% Similarity=0.607 Sum_probs=150.3
Q ss_pred CCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHH
Q 010234 71 CGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHL 150 (514)
Q Consensus 71 ~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (514)
.|-.++|+++++|++||+++++|++|++.|++++|+|||+..+++.+|+++||++
T Consensus 524 ~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~------------------------- 578 (713)
T COG2217 524 VDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDE------------------------- 578 (713)
T ss_pred ECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHh-------------------------
Confidence 4558999999999999999999999999999999999999999999999999953
Q ss_pred hhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHH
Q 010234 151 RQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 151 ~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
+++...|++|.++++.+|..++.|+|+|||.||.|+|.+||+||||| +++|+++++||+++.+++...+.+++
T Consensus 579 ------v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG-~GtDvA~eaADvvL~~~dL~~v~~ai 651 (713)
T COG2217 579 ------VRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMG-SGTDVAIEAADVVLMRDDLSAVPEAI 651 (713)
T ss_pred ------heccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeec-CCcHHHHHhCCEEEecCCHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999 79999999999999999999999999
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 231 GEGRSIYNNMKAFIRYMISSNIGEVASIFF 260 (514)
Q Consensus 231 ~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~ 260 (514)
+-+|+.+.++++++.|.+.+|.+.+.....
T Consensus 652 ~lsr~t~~~IkqNl~~A~~yn~~~iplA~~ 681 (713)
T COG2217 652 DLSRATRRIIKQNLFWAFGYNAIAIPLAAG 681 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988665543
No 25
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=231.58 Aligned_cols=206 Identities=30% Similarity=0.441 Sum_probs=172.2
Q ss_pred HHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHH
Q 010234 19 ILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRA 98 (514)
Q Consensus 19 ~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~ 98 (514)
+++.+++-...|.-+..++.- -++.|+++++|++|||+..+|+.|++
T Consensus 691 i~~~~~~~e~~g~tvv~v~vn---------------------------------~~l~gv~~l~D~vr~~a~~av~~Lk~ 737 (951)
T KOG0207|consen 691 ILDALTESERKGQTVVYVAVN---------------------------------GQLVGVFALEDQVRPDAALAVAELKS 737 (951)
T ss_pred HHHhhhhHhhcCceEEEEEEC---------------------------------CEEEEEEEeccccchhHHHHHHHHHh
Confidence 555666666677777666643 37899999999999999999999999
Q ss_pred cCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhCCC
Q 010234 99 AGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGE 178 (514)
Q Consensus 99 ~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~ 178 (514)
.|++++|+|||+..+|+++|+++|++ .+++...|++|.+.++.+|+++.
T Consensus 738 ~Gi~v~mLTGDn~~aA~svA~~VGi~-------------------------------~V~aev~P~~K~~~Ik~lq~~~~ 786 (951)
T KOG0207|consen 738 MGIKVVMLTGDNDAAARSVAQQVGID-------------------------------NVYAEVLPEQKAEKIKEIQKNGG 786 (951)
T ss_pred cCceEEEEcCCCHHHHHHHHHhhCcc-------------------------------eEEeccCchhhHHHHHHHHhcCC
Confidence 99999999999999999999999973 48999999999999999999999
Q ss_pred EEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 179 VVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASI 258 (514)
Q Consensus 179 ~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~ 258 (514)
.|+|+|||.||.|+|.+||+||||| ++++.+.++||+|+..|+..+++.+++.+|+...|++.++.|.+.+|+..+...
T Consensus 787 ~VaMVGDGINDaPALA~AdVGIaig-~gs~vAieaADIVLmrn~L~~v~~ai~LSrkt~~rIk~N~~~A~~yn~~~IpIA 865 (951)
T KOG0207|consen 787 PVAMVGDGINDAPALAQADVGIAIG-AGSDVAIEAADIVLMRNDLRDVPFAIDLSRKTVKRIKLNFVWALIYNLVGIPIA 865 (951)
T ss_pred cEEEEeCCCCccHHHHhhccceeec-cccHHHHhhCCEEEEccchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999 789999999999999999999999999999999999999999999998865432
Q ss_pred HHHHhhcCCCchhHH---HHHHHHHHhhhhhhccc
Q 010234 259 FFTAALGIPEGLIPV---QLLWVNLVTDGPPATAL 290 (514)
Q Consensus 259 ~~~~~~~~~~~~~~~---~~l~~~~i~~~~~~l~l 290 (514)
...|..++..+.|+ ..+..+.+...+-++.+
T Consensus 866 -agvF~P~~~~L~Pw~A~lama~SSvsVv~sSllL 899 (951)
T KOG0207|consen 866 -AGVFAPFGIVLPPWMASLAMAASSVSVVLSSLLL 899 (951)
T ss_pred -eecccCCccccCchHHHHHHHhhhHHHhhhHHHH
Confidence 22333333113333 34444544444444443
No 26
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=6.8e-25 Score=217.77 Aligned_cols=487 Identities=14% Similarity=0.140 Sum_probs=318.3
Q ss_pred ccCCceeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccC----CCCCC-CCcccccc-----------------
Q 010234 3 LLDGSVVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFET----YDGNE-DHPAHTLL----------------- 60 (514)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~----~~~~~-~~~~~~~~----------------- 60 (514)
|.+.++.|++..+|.+.++-+.+-...| .+++||||+....... +..+. .++.++.+
T Consensus 711 WdGadi~PlSg~dkkkV~DFY~RaclsG-~C~AfaYkP~~caLasqL~GKciEl~~~p~~SkI~T~celp~sipikqnar 789 (1354)
T KOG4383|consen 711 WDGADIIPLSGRDKKKVKDFYLRACLSG-HCLAFAYKPCFCALASQLAGKCIELPLNPEHSKIETACELPHSIPIKQNAR 789 (1354)
T ss_pred cCCceeeecCcchHHHHHHHHHHHhhcc-cchheecccHHHHHHHHhCCceEEeccCcccchhhhhccCCCCCcchhhhh
Confidence 5667889999999999999988888888 6899999984321100 00000 00000000
Q ss_pred -------------cCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccC
Q 010234 61 -------------LNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECN 127 (514)
Q Consensus 61 -------------~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~ 127 (514)
...+...+.-++.+|.|++..+.+.+++....|+.|.++.||++..|-.+....+-+|+++|+...+
T Consensus 790 ~S~~e~Degige~l~~e~c~Qa~sGQIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEaGW 869 (1354)
T KOG4383|consen 790 ESFDEIDEGIGERLADEACDQAFSGQIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEAGW 869 (1354)
T ss_pred hhhhhhccccceeccHhHHHHHhccchhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhcccccc
Confidence 0001122233678999999999999999999999999999999999999999999999999998776
Q ss_pred ccceecccChH----------------------HHhhhh----------HHHH---------------------------
Q 010234 128 EDISLKSLTGK----------------------EFMEMH----------DKKA--------------------------- 148 (514)
Q Consensus 128 ~~~~~~~~~~~----------------------~~~~~~----------~~~~--------------------------- 148 (514)
++.....-.++ ++..+. .++.
T Consensus 870 NCHISLa~~~d~Pg~e~~pa~~q~a~qkpSlhddlnqia~ddaeg~lL~~Eeg~~dliSfq~~dsdi~kf~ed~N~AkLP 949 (1354)
T KOG4383|consen 870 NCHISLAEEEDAPGREAGPAHEQFAAQKPSLHDDLNQIALDDAEGELLDCEEGARDLISFQKMDSDIAKFAEDPNIAKLP 949 (1354)
T ss_pred ceeEEeccCCCCCcccCCCCChhhhccCcchhHHHHHhhhcccccceeehhhcccCCccccccccchhhhcCCCchhhcC
Confidence 66543322211 011110 0000
Q ss_pred --------HHhhc-----CceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcC--CHHhhhhcCcceeeCCCC-------
Q 010234 149 --------HLRQS-----GGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVN--DAPALKLADIGIAMGIAG------- 206 (514)
Q Consensus 149 --------~~~~~-----~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~N--D~~ml~~A~igvamg~~~------- 206 (514)
++..- -+.+|.+++|+...+|++.+|++|++|+++|...| ..-.+-+||++||+..-.
T Consensus 950 rGihnVRPHL~~iDNVPLLV~LFTDcnpeamcEMIeIMQE~GEVtcclGS~aN~rNSciflkadISialD~l~~~~C~~e 1029 (1354)
T KOG4383|consen 950 RGIHNVRPHLDEIDNVPLLVGLFTDCNPEAMCEMIEIMQENGEVTCCLGSCANARNSCIFLKADISIALDDLEEPACRLE 1029 (1354)
T ss_pred cchhhcCcccccccCcceeeeeccCCCHHHHHHHHHHHHHcCcEEEEeccccccccceEEEccceeEEeccCCCccceec
Confidence 00000 13578899999999999999999999999999988 345677899999885210
Q ss_pred ------cH-----------------HHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010234 207 ------TE-----------------VAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIFFTAA 263 (514)
Q Consensus 207 ------~~-----------------~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 263 (514)
.- ...-++|+.....+.-.+..+|+.+|+....+|+++.|.+++.+.+....|+..+
T Consensus 1030 ~fg~assismaqandglsplQiSgqLnaL~c~~~f~~ee~ikiirLIe~ARHa~~g~R~cfLFiLq~qL~l~Vi~flSc~ 1109 (1354)
T KOG4383|consen 1030 DFGVASSISMAQANDGLSPLQISGQLNALACDFRFDHEELIKIIRLIECARHAMSGFRHCFLFILQAQLLLSVIIFLSCF 1109 (1354)
T ss_pred ccccchhhhhhhhcCCCCceeecccccccccccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111234444444455688899999999999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHHhhhhhhcc-cccCCCCccccCCCCCCCCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 264 LGIPEGLIPVQLLWVNLVTDGPPATA-LGFNPPDKDIMKKPPRRSDDSLISA---WILFRYLVIGLYVGIATVGVFIIWY 339 (514)
Q Consensus 264 ~~~~~~~~~~~~l~~~~i~~~~~~l~-l~~~~~~~~im~~~P~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
+.+|..++-.+++|..++..++..+. +-..++++.+|.+...+....+... +.....++.....+..+...|.+..
T Consensus 1110 ~~LP~i~s~sdii~lScfc~PlL~i~tL~gk~~hkSii~maagKNlqeIPKk~kh~fllcFilkFsls~ssclIcFgf~L 1189 (1354)
T KOG4383|consen 1110 FFLPIIFSHSDIILLSCFCIPLLFIGTLFGKFEHKSIIIMAAGKNLQEIPKKEKHKFLLCFILKFSLSASSCLICFGFLL 1189 (1354)
T ss_pred HhccchhccchHHHHHHHHHHHHHHHHHhcCCCccceEEeeccCChhhcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999988877776 3346666666655543333333221 1222222222222222222221111
Q ss_pred hhcccccccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHH
Q 010234 340 THGSFLGINLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNS 419 (514)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~ 419 (514)
..+.+..-..+..+........+-+++..|++. |..|+..++...-.-++.+.++..
T Consensus 1190 --~afcd~~~d~n~~nC~~~m~~S~ddqa~a~Fed---------------------fangL~saQkl~aa~iilH~ifiq 1246 (1354)
T KOG4383|consen 1190 --MAFCDLMCDFNDINCLFNMDGSADDQALAEFED---------------------FANGLGSAQKLLAAEIILHIIFIQ 1246 (1354)
T ss_pred --HHhhhhhccccccceeeccCCCcCcccchhHHH---------------------HHhhhhhHHHHHHHHHHHHhheeE
Confidence 111111111111111111111122223333221 222344566667777788888888
Q ss_pred HHhhcCCCCccccCCCcchHHHHHHHHHHHHHHHHHhcc------ccc-cccccccCChhhHHHHHHHHHHHHHHHHHHH
Q 010234 420 LNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVP------FLA-QIFGIVPLSFNEWLLVLAIAFPVVLIDEVLK 492 (514)
Q Consensus 420 ~~~~~~~~s~~~~~~~~N~~~~~~~~~~~~l~~~~~~ip------~~~-~~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K 492 (514)
+.+.++..++|+..+..|.||-+.+-..+.-+.+++.+. ... -.|++...+..-|++.+++..++.+.+|++|
T Consensus 1247 IThih~tkpl~~ks~LsnLWwa~~i~~lLl~a~V~taldlQi~thrd~~VHfgldd~pLL~~~igcisi~iiVitNEiiK 1326 (1354)
T KOG4383|consen 1247 ITHIHCTKPLSFKSGLSNLWWAFPIKCLLLDAAVITALDLQIGTHRDRGVHFGLDDFPLLPLGIGCISICIIVITNEIIK 1326 (1354)
T ss_pred EEEEEEecchhhhcccchheeecccceeehhhHHHHHHhhhhhhccccceeeccccchhHHHHHHHHheeeeeehhhHHH
Confidence 999999999999899999988666544444443333321 111 2466777788889998888888889999999
Q ss_pred HHhhccCCCcccccccCCCCC
Q 010234 493 FVGRCTNGSQTSRRKSSKPKS 513 (514)
Q Consensus 493 ~~~r~~~~~~~~~~~~~~~~~ 513 (514)
..+.+.+-|+|||+|.+..++
T Consensus 1327 iheIR~~~R~QkRqK~eFdTK 1347 (1354)
T KOG4383|consen 1327 IHEIRQFTREQKRQKFEFDTK 1347 (1354)
T ss_pred HHHHHHHHHHHHhhhheeccc
Confidence 999999999999999988654
No 27
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.92 E-value=3e-24 Score=232.42 Aligned_cols=174 Identities=30% Similarity=0.460 Sum_probs=158.4
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCR 97 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~ 97 (514)
.+.+.++++..+|.|++++|+. .+++|+++++|+++|+++++|++|+
T Consensus 535 ~~~~~~~~~~~~g~~~v~va~~---------------------------------~~~~g~i~l~d~~r~~a~~~i~~L~ 581 (741)
T PRK11033 535 AFAGQINELESAGKTVVLVLRN---------------------------------DDVLGLIALQDTLRADARQAISELK 581 (741)
T ss_pred HHHHHHHHHHhCCCEEEEEEEC---------------------------------CEEEEEEEEecCCchhHHHHHHHHH
Confidence 3555677889999999999852 3789999999999999999999999
Q ss_pred HcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhCC
Q 010234 98 AAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDG 177 (514)
Q Consensus 98 ~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~ 177 (514)
++|++++|+|||+..++.++++++|+. .+++..|++|.++++.++..
T Consensus 582 ~~gi~~~llTGd~~~~a~~ia~~lgi~--------------------------------~~~~~~p~~K~~~v~~l~~~- 628 (741)
T PRK11033 582 ALGIKGVMLTGDNPRAAAAIAGELGID--------------------------------FRAGLLPEDKVKAVTELNQH- 628 (741)
T ss_pred HCCCEEEEEcCCCHHHHHHHHHHcCCC--------------------------------eecCCCHHHHHHHHHHHhcC-
Confidence 999999999999999999999999994 23456899999999999965
Q ss_pred CEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 010234 178 EVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVAS 257 (514)
Q Consensus 178 ~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~ 257 (514)
+.|+|+|||.||.+||+.||+||||| ++++.++++||+++.+++..++.++++.||+.+.++++++.|.+.+|...+..
T Consensus 629 ~~v~mvGDgiNDapAl~~A~vgia~g-~~~~~a~~~adivl~~~~l~~l~~~i~~sr~~~~~I~~nl~~a~~~n~~~i~~ 707 (741)
T PRK11033 629 APLAMVGDGINDAPAMKAASIGIAMG-SGTDVALETADAALTHNRLRGLAQMIELSRATHANIRQNITIALGLKAIFLVT 707 (741)
T ss_pred CCEEEEECCHHhHHHHHhCCeeEEec-CCCHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 78999999999999999999999999999999999999999999999876554
Q ss_pred H
Q 010234 258 I 258 (514)
Q Consensus 258 ~ 258 (514)
.
T Consensus 708 a 708 (741)
T PRK11033 708 T 708 (741)
T ss_pred H
Confidence 4
No 28
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=216.15 Aligned_cols=257 Identities=33% Similarity=0.437 Sum_probs=196.0
Q ss_pred eCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhH
Q 010234 10 PLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEV 89 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~ 89 (514)
.-+++.++...+.+++|+++|+|.+++|++...++..+ .-.....|+|++-+-|++|.++
T Consensus 438 ~~~~~i~~~vh~~id~~AeRGlRSLgVArq~v~e~~~~--------------------~~g~pw~~~gllp~fdpprhds 497 (942)
T KOG0205|consen 438 NEDHDIPERVHSIIDKFAERGLRSLAVARQEVPEKTKE--------------------SPGGPWEFVGLLPLFDPPRHDS 497 (942)
T ss_pred hccCcchHHHHHHHHHHHHhcchhhhhhhhcccccccc--------------------CCCCCcccccccccCCCCccch
Confidence 34667889999999999999999999999986543211 1135578999999999999999
Q ss_pred HHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcccee-cccChHHHhhhhHHHHHHhhcCceEEEecChhhHHH
Q 010234 90 HQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISL-KSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQE 168 (514)
Q Consensus 90 ~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~ 168 (514)
.++|++....|..|.|+|||...-++..++++|+-.+-..-.. .-..+++...-.+..... .+..-|+..-|++|.+
T Consensus 498 a~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~eli--e~adgfAgVfpehKy~ 575 (942)
T KOG0205|consen 498 AETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELI--EKADGFAGVFPEHKYE 575 (942)
T ss_pred HHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHh--hhccCccccCHHHHHH
Confidence 9999999999999999999999999999999988543211000 000000000000011111 1234577888999999
Q ss_pred HHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHH
Q 010234 169 IVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMI 248 (514)
Q Consensus 169 iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~ 248 (514)
+++.+|++++.+.|.|||.||.|+++.||+|+|+. ++++.++.++|+|+..+..+.+..++..+|.+|+|++.+..|.+
T Consensus 576 iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava-~atdaar~asdiVltepglSviI~avltSraIfqrmknytiyav 654 (942)
T KOG0205|consen 576 IVKILQERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 654 (942)
T ss_pred HHHHHhhcCceecccCCCcccchhhcccccceeec-cchhhhcccccEEEcCCCchhhHHHHHHHHHHHHHHhhheeeee
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhhhhcccc
Q 010234 249 SSNIGEVASIFFTAALGIPEGLIPVQLLWVNLVTDGPPATALG 291 (514)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~l~ 291 (514)
+..+-.++... ...+-+...++|+..+++.++-+. +..+.+
T Consensus 655 sitiriv~gfm-l~alIw~~df~pfmvliiailnd~-t~mtis 695 (942)
T KOG0205|consen 655 SITIRIVFGFM-LIALIWEFDFSPFMVLIIAILNDG-TIMTIS 695 (942)
T ss_pred hhHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHhcCC-ceEEEE
Confidence 87776543222 222223345777777777666553 333443
No 29
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.92 E-value=5.9e-24 Score=222.55 Aligned_cols=168 Identities=48% Similarity=0.773 Sum_probs=155.8
Q ss_pred HHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHc
Q 010234 20 LDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAA 99 (514)
Q Consensus 20 ~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~ 99 (514)
.+.+++++.+|+|++++|++. +++|++.++|++++++.++|+.|+++
T Consensus 316 ~~~~~~~~~~g~~~~~~a~~~---------------------------------~~~g~i~l~d~lr~~~~~~i~~l~~~ 362 (499)
T TIGR01494 316 EEKVKELAQSGLRVLAVASKE---------------------------------TLLGLLGLEDPLRDDAKETISELREA 362 (499)
T ss_pred HHHHHHHHhCCCEEEEEEECC---------------------------------eEEEEEEecCCCchhHHHHHHHHHHC
Confidence 445667889999999999763 58999999999999999999999999
Q ss_pred CCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhCCCE
Q 010234 100 GIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEV 179 (514)
Q Consensus 100 Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~ 179 (514)
|++++|+|||+..++..+++++|+ +++.+|++|.++++.++..++.
T Consensus 363 gi~~~~ltGD~~~~a~~ia~~lgi----------------------------------~~~~~p~~K~~~v~~l~~~g~~ 408 (499)
T TIGR01494 363 GIRVIMLTGDNVLTAKAIAKELGI----------------------------------FARVTPEEKAALVEALQKKGRV 408 (499)
T ss_pred CCeEEEEcCCCHHHHHHHHHHcCc----------------------------------eeccCHHHHHHHHHHHHHCCCE
Confidence 999999999999999999999986 4678999999999999999999
Q ss_pred EEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 180 VAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIF 259 (514)
Q Consensus 180 v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~ 259 (514)
|+|+|||.||.+|++.||+||+|| ++++||+++.+++...+..++++||+.+.++++++.|.+.+|+..+...+
T Consensus 409 v~~vGDg~nD~~al~~Advgia~~------a~~~adivl~~~~l~~i~~~~~~~r~~~~~i~~~~~~~~~~n~~~~~~a~ 482 (499)
T TIGR01494 409 VAMTGDGVNDAPALKKADVGIAMG------AKAAADIVLLDDNLSTIVDALKEGRKTFSTIKSNIFWAIAYNLILIPLAA 482 (499)
T ss_pred EEEECCChhhHHHHHhCCCccccc------hHHhCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 48889999999999999999999999999999999999999999766554
Q ss_pred H
Q 010234 260 F 260 (514)
Q Consensus 260 ~ 260 (514)
+
T Consensus 483 ~ 483 (499)
T TIGR01494 483 L 483 (499)
T ss_pred H
Confidence 4
No 30
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=99.92 E-value=2.9e-24 Score=194.84 Aligned_cols=181 Identities=39% Similarity=0.696 Sum_probs=148.9
Q ss_pred CCchhHHHHHHHHHHhhhhhhcccccCCCCccccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010234 267 PEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFIIWYTHGSFLG 346 (514)
Q Consensus 267 ~~~~~~~~~l~~~~i~~~~~~l~l~~~~~~~~im~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (514)
|.|+++.|++|+|+++|.+|+++++.+|+|+++|+|+|+++++++++++.+.+.+.+|++.++.+++.|+..... .+
T Consensus 1 P~Pl~~~qiL~inli~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~---~~ 77 (182)
T PF00689_consen 1 PLPLTPIQILWINLITDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYI---FG 77 (182)
T ss_dssp S-SS-HHHHHHHHHTTTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHS---TC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhc---cc
Confidence 578999999999999999999999999999999999999999999999999989889999999888877765531 00
Q ss_pred ccccCCCCccccccccccCCCCCCCCCcccCCCcCCCcccccCCCCCCccCCcchhhHHHHHHHHHHHHHHHHHHhhcCC
Q 010234 347 INLIGDGHSLVTYSQLTNWGQCPSWGNFTVSPFTAGNQVFTFNDNPCDYFHGGKVKAMTLSLSVLVAIEMFNSLNALSED 426 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~~~~~~~~~~~~~ 426 (514)
. . ..........++|++|.+++++|+++.+++|+++
T Consensus 78 ~-----~---------------------------------------~~~~~~~~~~a~T~~F~~lv~~q~~~~~~~r~~~ 113 (182)
T PF00689_consen 78 W-----D---------------------------------------EETNNDNLAQAQTMAFTALVLSQLFNAFNCRSRR 113 (182)
T ss_dssp S-----S---------------------------------------SHHHTTCHHHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred c-----c---------------------------------------cccchhHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 0 0 0000001256999999999999999999999999
Q ss_pred CCccc-cCCCcchHHHHHHHHHHHHHHHHHhccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 010234 427 GSLLT-MPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSFNEWLLVLAIAFPVVLIDEVLKFV 494 (514)
Q Consensus 427 ~s~~~-~~~~~N~~~~~~~~~~~~l~~~~~~ip~~~~~f~~~~l~~~~w~~~l~~~~~~~l~~e~~K~~ 494 (514)
.+.|+ .+.++|++++.+++++++++++++|+|+++..|++.++++.+|+++++++++.++++|++|++
T Consensus 114 ~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~~~~~~~ei~K~i 182 (182)
T PF00689_consen 114 RSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLALALLPFIVDEIRKLI 182 (182)
T ss_dssp STCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHHHCHHHHHHHHHHHH
T ss_pred ccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99998 788899999999999999999999999999999999999999999999999999999999985
No 31
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.91 E-value=6.4e-23 Score=216.83 Aligned_cols=174 Identities=39% Similarity=0.601 Sum_probs=158.8
Q ss_pred HHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcC
Q 010234 21 DALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAG 100 (514)
Q Consensus 21 ~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~G 100 (514)
+.+++++++|.|++.++. |.+++|.+.++|+++|+++++|+.|+++|
T Consensus 354 ~~~~~~~~~g~~~~~v~~---------------------------------~~~~~g~i~~~d~~~~g~~e~l~~L~~~g 400 (556)
T TIGR01525 354 DLLNEGESQGKTVVFVAV---------------------------------DGELLGVIALRDQLRPEAKEAIAALKRAG 400 (556)
T ss_pred HHHHHHhhCCcEEEEEEE---------------------------------CCEEEEEEEecccchHhHHHHHHHHHHcC
Confidence 455667778888877773 23789999999999999999999999999
Q ss_pred -CcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhCCCE
Q 010234 101 -IRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEV 179 (514)
Q Consensus 101 -i~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~ 179 (514)
+++.++|||+...+..+++++|+.. +|.+..|++|.++++.++..+++
T Consensus 401 ~i~v~ivTgd~~~~a~~i~~~lgi~~-------------------------------~f~~~~p~~K~~~v~~l~~~~~~ 449 (556)
T TIGR01525 401 GIKLVMLTGDNRSAAEAVAAELGIDE-------------------------------VHAELLPEDKLAIVKELQEEGGV 449 (556)
T ss_pred CCeEEEEeCCCHHHHHHHHHHhCCCe-------------------------------eeccCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999999999942 56777899999999999999999
Q ss_pred EEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 180 VAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVASIF 259 (514)
Q Consensus 180 v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~ 259 (514)
|+|+|||.||++|++.||+|++|| ++++.+++.||+++.+++..++.++++.||+.+.++++++.|.+.+|+..+...+
T Consensus 450 v~~vGDg~nD~~al~~A~vgia~g-~~~~~~~~~Ad~vi~~~~~~~l~~~i~~~r~~~~~i~~nl~~a~~~N~~~i~~a~ 528 (556)
T TIGR01525 450 VAMVGDGINDAPALAAADVGIAMG-AGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYNLVAIPLAA 528 (556)
T ss_pred EEEEECChhHHHHHhhCCEeEEeC-CCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 7888889999999999999999999999999999999999999999998865443
No 32
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.91 E-value=8e-23 Score=225.72 Aligned_cols=177 Identities=32% Similarity=0.463 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHH
Q 010234 17 NLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDC 96 (514)
Q Consensus 17 ~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l 96 (514)
+.+.+.+++++++|.+++.+|+. ..++|++.++|+++|++.++|++|
T Consensus 616 ~~~~~~~~~~~~~g~~~v~va~~---------------------------------~~~~g~~~l~d~~r~~a~~~i~~L 662 (834)
T PRK10671 616 KALEAEITAQASQGATPVLLAVD---------------------------------GKAAALLAIRDPLRSDSVAALQRL 662 (834)
T ss_pred HHHHHHHHHHHhCCCeEEEEEEC---------------------------------CEEEEEEEccCcchhhHHHHHHHH
Confidence 34556677888899999888853 257999999999999999999999
Q ss_pred HHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHHHHhhC
Q 010234 97 RAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVRLLKED 176 (514)
Q Consensus 97 ~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~~l~~~ 176 (514)
++.|++++++|||+..++..+++++|+.. +++...|++|.++++.++.+
T Consensus 663 ~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~-------------------------------~~~~~~p~~K~~~i~~l~~~ 711 (834)
T PRK10671 663 HKAGYRLVMLTGDNPTTANAIAKEAGIDE-------------------------------VIAGVLPDGKAEAIKRLQSQ 711 (834)
T ss_pred HHCCCeEEEEcCCCHHHHHHHHHHcCCCE-------------------------------EEeCCCHHHHHHHHHHHhhc
Confidence 99999999999999999999999999942 66778899999999999999
Q ss_pred CCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 010234 177 GEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKAFIRYMISSNIGEVA 256 (514)
Q Consensus 177 ~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~~~~~~~~~~~~~~~ 256 (514)
+++|+|+|||.||++|++.||+||||| ++++.++++||+++.+++..++.++++.||+.+.++++++.|.+.+|++.+.
T Consensus 712 ~~~v~~vGDg~nD~~al~~Agvgia~g-~g~~~a~~~ad~vl~~~~~~~i~~~i~l~r~~~~~i~~Nl~~a~~yn~~~i~ 790 (834)
T PRK10671 712 GRQVAMVGDGINDAPALAQADVGIAMG-GGSDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSLGIP 790 (834)
T ss_pred CCEEEEEeCCHHHHHHHHhCCeeEEec-CCCHHHHHhCCEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 7899999999999999999999999999999999999999999999988765
Q ss_pred HH
Q 010234 257 SI 258 (514)
Q Consensus 257 ~~ 258 (514)
..
T Consensus 791 ~a 792 (834)
T PRK10671 791 IA 792 (834)
T ss_pred HH
Confidence 44
No 33
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.89 E-value=3.9e-22 Score=209.57 Aligned_cols=160 Identities=38% Similarity=0.569 Sum_probs=148.9
Q ss_pred ccCCcEEEEEecccCCCChhHHHHHHHHHHcCC-cEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHH
Q 010234 69 MECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI-RVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKK 147 (514)
Q Consensus 69 ~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi-~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 147 (514)
+..|..++|.+.++|+++|+++++|++|+++|+ +++++|||+...+..+++++|+..
T Consensus 347 v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~---------------------- 404 (536)
T TIGR01512 347 VARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE---------------------- 404 (536)
T ss_pred EEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh----------------------
Confidence 456889999999999999999999999999999 999999999999999999999943
Q ss_pred HHHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHH
Q 010234 148 AHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIV 227 (514)
Q Consensus 148 ~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~ 227 (514)
++++..|++|.++++.++..+++|+|+|||.||++|++.||+|++||.++++.+++.||+++.+++..++.
T Consensus 405 ---------~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~~~~~ad~vl~~~~l~~l~ 475 (536)
T TIGR01512 405 ---------VHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLP 475 (536)
T ss_pred ---------hhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHHHHHhCCEEEECCCHHHHH
Confidence 45666799999999999999999999999999999999999999999667888899999999999999999
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 228 SAVGEGRSIYNNMKAFIRYMISSNIGEVASIF 259 (514)
Q Consensus 228 ~~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~~ 259 (514)
++++.||+++.++++++.|.+.+|+..+...+
T Consensus 476 ~~i~~~r~~~~~i~~nl~~a~~~n~~~i~~a~ 507 (536)
T TIGR01512 476 QAIRLARRTRRIVKQNVVIALGIILLLILLAL 507 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765543
No 34
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.88 E-value=1.5e-21 Score=205.82 Aligned_cols=157 Identities=36% Similarity=0.604 Sum_probs=146.6
Q ss_pred ccCCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHH
Q 010234 69 MECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKA 148 (514)
Q Consensus 69 ~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (514)
+..|.+++|++.++|+++|+++++|++|+++|++++++|||+...+..+++++|+.
T Consensus 390 ~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~------------------------ 445 (562)
T TIGR01511 390 VAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN------------------------ 445 (562)
T ss_pred EEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc------------------------
Confidence 45688999999999999999999999999999999999999999999999999983
Q ss_pred HHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHH
Q 010234 149 HLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVS 228 (514)
Q Consensus 149 ~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~ 228 (514)
++++..|++|.++++.++.++++|+|+|||.||.+|+++||+||+|| ++.+.+++.||+++.+++...+.+
T Consensus 446 --------~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g-~g~~~a~~~Advvl~~~~l~~l~~ 516 (562)
T TIGR01511 446 --------VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIG-AGTDVAIEAADVVLMRNDLNDVAT 516 (562)
T ss_pred --------EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeC-CcCHHHHhhCCEEEeCCCHHHHHH
Confidence 34566789999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 010234 229 AVGEGRSIYNNMKAFIRYMISSNIGEVASI 258 (514)
Q Consensus 229 ~i~~gr~~~~~i~~~~~~~~~~~~~~~~~~ 258 (514)
+++.||+.++++++++.|.+.+|++.+...
T Consensus 517 ~i~lsr~~~~~i~qn~~~a~~~n~~~i~la 546 (562)
T TIGR01511 517 AIDLSRKTLRRIKQNLLWAFGYNVIAIPIA 546 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865443
No 35
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.5e-21 Score=187.15 Aligned_cols=137 Identities=38% Similarity=0.598 Sum_probs=128.7
Q ss_pred CCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHH
Q 010234 71 CGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHL 150 (514)
Q Consensus 71 ~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (514)
.|-.++|++.++|-++|+.+|-.++||+.||+.+|+|||++.+|..++.+.|+++
T Consensus 434 ~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDd------------------------- 488 (681)
T COG2216 434 ENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD------------------------- 488 (681)
T ss_pred ECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchh-------------------------
Confidence 3447899999999999999999999999999999999999999999999999964
Q ss_pred hhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHH
Q 010234 151 RQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 151 ~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
..+.++|++|.++++.-|..++-|+|+|||.||.|+|.+||+|+||. +++..+|++++.|-.|.|...+.+.+
T Consensus 489 ------fiAeatPEdK~~~I~~eQ~~grlVAMtGDGTNDAPALAqAdVg~AMN-sGTqAAkEAaNMVDLDS~PTKlievV 561 (681)
T COG2216 489 ------FIAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSNPTKLIEVV 561 (681)
T ss_pred ------hhhcCChHHHHHHHHHHHhcCcEEEEcCCCCCcchhhhhcchhhhhc-cccHHHHHhhcccccCCCccceehHh
Confidence 46788999999999999999999999999999999999999999997 99999999999999999999999999
Q ss_pred HHhHhHHHH
Q 010234 231 GEGRSIYNN 239 (514)
Q Consensus 231 ~~gr~~~~~ 239 (514)
+-|++++-.
T Consensus 562 ~IGKqlLiT 570 (681)
T COG2216 562 EIGKQLLIT 570 (681)
T ss_pred hhhhhheee
Confidence 999986643
No 36
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.69 E-value=3.5e-16 Score=151.18 Aligned_cols=65 Identities=25% Similarity=0.332 Sum_probs=58.9
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
..++++++...++|++||||.||++||+.||+||||| |+.+.+|+.||+|+.+++.+|++++|++
T Consensus 202 ~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~-NA~~~vK~~A~~vt~~n~~dGva~~i~~ 266 (270)
T PRK10513 202 KSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMG-NAIPSVKEVAQFVTKSNLEDGVAFAIEK 266 (270)
T ss_pred HHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEec-CccHHHHHhcCeeccCCCcchHHHHHHH
Confidence 5566667777899999999999999999999999999 7788889999999999999999999964
No 37
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=148.89 Aligned_cols=148 Identities=28% Similarity=0.362 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcc----cCc--------cceecccChHHHhhhhH------
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFE----CNE--------DISLKSLTGKEFMEMHD------ 145 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~----~~~--------~~~~~~~~~~~~~~~~~------ 145 (514)
++++.++++|++++++|++++++|||+...+..+.+++++.. .+. .+....++.+....+.+
T Consensus 20 ~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~~~~~i~~~~~~~~ 99 (264)
T COG0561 20 TISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNGGELLFQKPLSREDVEELLELLEDFQ 99 (264)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecCCcEEeeecCCHHHHHHHHHHHHhcc
Confidence 389999999999999999999999999999999999999853 111 11111111111111000
Q ss_pred ----------------------------------------------------------HHHHHhh---cCceEEEecC--
Q 010234 146 ----------------------------------------------------------KKAHLRQ---SGGLLFSRAE-- 162 (514)
Q Consensus 146 ----------------------------------------------------------~~~~~~~---~~~~i~~~~~-- 162 (514)
....+.. .....+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~ 179 (264)
T COG0561 100 GIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFPDLGLTVSSSGPI 179 (264)
T ss_pred CceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHHHHhhhccccceEEEEcCCc
Confidence 0000000 0111111111
Q ss_pred -------hhhH----HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHH
Q 010234 163 -------PRHK----QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVG 231 (514)
Q Consensus 163 -------p~~k----~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~ 231 (514)
..+| ..+++.++...++|++|||+.||++||+.||.||||| |+++.+|+.||+++.+++.+||+++++
T Consensus 180 ~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~-Na~~~~k~~A~~vt~~n~~~Gv~~~l~ 258 (264)
T COG0561 180 SLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMG-NADEELKELADYVTTSNDEDGVAEALE 258 (264)
T ss_pred eEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeecc-CCCHHHHhhCCcccCCccchHHHHHHH
Confidence 1334 5566666777788999999999999999999999999 568888999999999999999999997
Q ss_pred H
Q 010234 232 E 232 (514)
Q Consensus 232 ~ 232 (514)
+
T Consensus 259 ~ 259 (264)
T COG0561 259 K 259 (264)
T ss_pred H
Confidence 5
No 38
>PRK10976 putative hydrolase; Provisional
Probab=99.67 E-value=3.8e-16 Score=150.53 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=57.7
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhccc--ccccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASD--MVLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad--~v~~~~~~~~i~~~i~~ 232 (514)
..++++++...++|++|||+.||++||+.||+||||| |+.+.+|+.|| +|+.+++.+|++++|++
T Consensus 196 ~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~-NA~~~vK~~A~~~~v~~~n~edGVa~~l~~ 262 (266)
T PRK10976 196 EAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMG-NAHQRLKDLLPELEVIGSNADDAVPHYLRK 262 (266)
T ss_pred HHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeec-CCcHHHHHhCCCCeecccCchHHHHHHHHH
Confidence 5566667777899999999999999999999999999 77888899987 78899999999999964
No 39
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.67 E-value=5.9e-16 Score=149.69 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=57.9
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccc--cccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDM--VLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~--v~~~~~~~~i~~~i~~ 232 (514)
..++++++...++|++|||+.||++||+.||+||||| |+.+.+|++||+ ++.+++.+|++++|++
T Consensus 194 ~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~-Na~~~vK~~A~~~~v~~~n~edGva~~l~~ 260 (272)
T PRK15126 194 AVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMG-NAMPQLRAELPHLPVIGHCRNQAVSHYLTH 260 (272)
T ss_pred HHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceecc-CChHHHHHhCCCCeecCCCcchHHHHHHHH
Confidence 5566667778899999999999999999999999999 788888999997 7889999999999954
No 40
>PLN02887 hydrolase family protein
Probab=99.65 E-value=4.8e-15 Score=154.47 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=58.3
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
..++++++...++|++||||.||++||+.||+||||| |+.+.+|+.||+|+.+++.+||+++|++
T Consensus 513 k~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMg-NA~eeVK~~Ad~VT~sNdEDGVA~aLek 577 (580)
T PLN02887 513 KMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALS-NGAEKTKAVADVIGVSNDEDGVADAIYR 577 (580)
T ss_pred HHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeC-CCCHHHHHhCCEEeCCCCcCHHHHHHHH
Confidence 4556666777889999999999999999999999999 7788889999999999999999999964
No 41
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.64 E-value=2.2e-15 Score=142.03 Aligned_cols=146 Identities=25% Similarity=0.292 Sum_probs=102.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcc----cCccc----------eecccChHHHhhhhHH---
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFE----CNEDI----------SLKSLTGKEFMEMHDK--- 146 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~----~~~~~----------~~~~~~~~~~~~~~~~--- 146 (514)
++++.+.++|++++++|++++++|||+...+..+++.+|+.. .+... ....+. ....+.+.
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ 97 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLGDIE--ECEKAYSELKK 97 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEcCCCCEEEEcchH--HHHHHHHHHHH
Confidence 489999999999999999999999999999999999998742 11111 000000 00000000
Q ss_pred --------------------------------HHHHhhcC-ceE------EEecCh--hhH----HHHHHHHhhCCCEEE
Q 010234 147 --------------------------------KAHLRQSG-GLL------FSRAEP--RHK----QEIVRLLKEDGEVVA 181 (514)
Q Consensus 147 --------------------------------~~~~~~~~-~~i------~~~~~p--~~k----~~iv~~l~~~~~~v~ 181 (514)
........ ... +....| .+| ..+++.++...++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i 177 (230)
T PRK01158 98 RFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVA 177 (230)
T ss_pred hccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEE
Confidence 00000000 000 111121 123 556666777788999
Q ss_pred EEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHH
Q 010234 182 MTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 182 ~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
+|||+.||++|++.||+|+||| |+.+.+|+.||+++.+++.+|+++++++
T Consensus 178 ~~GD~~NDi~m~~~ag~~vam~-Na~~~vk~~a~~v~~~n~~~Gv~~~l~~ 227 (230)
T PRK01158 178 AIGDSENDLEMFEVAGFGVAVA-NADEELKEAADYVTEKSYGEGVAEAIEH 227 (230)
T ss_pred EECCchhhHHHHHhcCceEEec-CccHHHHHhcceEecCCCcChHHHHHHH
Confidence 9999999999999999999999 7788889999999999999999999864
No 42
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=99.62 E-value=5e-15 Score=118.47 Aligned_cols=127 Identities=26% Similarity=0.377 Sum_probs=108.9
Q ss_pred CcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHh
Q 010234 72 GLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLR 151 (514)
Q Consensus 72 ~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (514)
-....+.++--.++-+++.++|++|++. ++++++|||...+....|+..|+..
T Consensus 18 ~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~-------------------------- 70 (152)
T COG4087 18 AGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPV-------------------------- 70 (152)
T ss_pred cceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCce--------------------------
Confidence 3567899999999999999999999999 9999999999999999999999854
Q ss_pred hcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceee-CC-CCcHHHHhcccccccCCCchhHHHH
Q 010234 152 QSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAM-GI-AGTEVAKEASDMVLADDDFSTIVSA 229 (514)
Q Consensus 152 ~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvam-g~-~~~~~~k~~ad~v~~~~~~~~i~~~ 229 (514)
..+++-..|+.|.++++.|+.+++.|+|+|||.||.+||+.||+||+. ++ +.++.+...||+++. +...++++
T Consensus 71 ---~rv~a~a~~e~K~~ii~eLkk~~~k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik--~i~e~ldl 145 (152)
T COG4087 71 ---ERVFAGADPEMKAKIIRELKKRYEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLK--EIAEILDL 145 (152)
T ss_pred ---eeeecccCHHHHHHHHHHhcCCCcEEEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhh--hHHHHHHH
Confidence 347888899999999999999999999999999999999999999865 32 345566788999986 34444443
Q ss_pred H
Q 010234 230 V 230 (514)
Q Consensus 230 i 230 (514)
+
T Consensus 146 ~ 146 (152)
T COG4087 146 L 146 (152)
T ss_pred h
Confidence 3
No 43
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.62 E-value=5.2e-16 Score=144.58 Aligned_cols=97 Identities=47% Similarity=0.835 Sum_probs=92.2
Q ss_pred CcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHh
Q 010234 72 GLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLR 151 (514)
Q Consensus 72 ~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (514)
+..++|.+.+.|+++|++.++|+.|+++|++++|+|||+..++..+++++|+..
T Consensus 115 ~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~-------------------------- 168 (215)
T PF00702_consen 115 NLIFLGLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD-------------------------- 168 (215)
T ss_dssp SHEEEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS--------------------------
T ss_pred cCeEEEEEeecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc--------------------------
Confidence 789999999999999999999999999999999999999999999999999943
Q ss_pred hcCceEEEec--ChhhH--HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcC
Q 010234 152 QSGGLLFSRA--EPRHK--QEIVRLLKEDGEVVAMTGDGVNDAPALKLAD 197 (514)
Q Consensus 152 ~~~~~i~~~~--~p~~k--~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ 197 (514)
..++++. +|++| .++++.++.++++|+|+|||.||++|+++||
T Consensus 169 ---~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 169 ---SIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp ---EEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred ---ccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 4588899 99999 9999999988889999999999999999997
No 44
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.60 E-value=9.7e-15 Score=141.33 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=57.5
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
.++++.++...+++++|||+.||++|++.||+||||| ++.+.+|+.||+++.+++.+|++++|++
T Consensus 205 ~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vamg-na~~~lk~~Ad~v~~~n~~dGv~~~l~~ 269 (272)
T PRK10530 205 TQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAMG-NADDAVKARADLVIGDNTTPSIAEFIYS 269 (272)
T ss_pred HHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEec-CchHHHHHhCCEEEecCCCCcHHHHHHH
Confidence 4566666777889999999999999999999999999 5677779999999999999999999964
No 45
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.58 E-value=7.5e-15 Score=136.78 Aligned_cols=147 Identities=22% Similarity=0.271 Sum_probs=99.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCccc----Cccce--------ecccChHHHhhhhHH----
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC----NEDIS--------LKSLTGKEFMEMHDK---- 146 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~----~~~~~--------~~~~~~~~~~~~~~~---- 146 (514)
.++.+++.++|++|+++|++++++|||+...+..+++.+++... +..+. ........+......
T Consensus 17 ~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (215)
T TIGR01487 17 RMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKEDIFLANMEEEWFLDEEKKKRFP 96 (215)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCCcEEEecccchhhHHHhhhhhhh
Confidence 35899999999999999999999999999999999999987421 11110 000000000000000
Q ss_pred -------------------------HHHHhhcCc-------eEEEecChhhHHH----HHHHHhhCCCEEEEEcCCcCCH
Q 010234 147 -------------------------KAHLRQSGG-------LLFSRAEPRHKQE----IVRLLKEDGEVVAMTGDGVNDA 190 (514)
Q Consensus 147 -------------------------~~~~~~~~~-------~i~~~~~p~~k~~----iv~~l~~~~~~v~~iGDg~ND~ 190 (514)
......... .+.......+|.. +++.++...+++++|||+.||+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~ 176 (215)
T TIGR01487 97 RDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDI 176 (215)
T ss_pred hhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence 000000000 0111122345544 4444556677899999999999
Q ss_pred HhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHH
Q 010234 191 PALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 191 ~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
+|++.||+|+||+ |+.+.+|+.||+++.+++.+|++++|
T Consensus 177 ~ml~~ag~~vam~-na~~~~k~~A~~v~~~~~~~Gv~~~l 215 (215)
T TIGR01487 177 DLFRVVGFKVAVA-NADDQLKEIADYVTSNPYGEGVVEVL 215 (215)
T ss_pred HHHHhCCCeEEcC-CccHHHHHhCCEEcCCCCCchhhhhC
Confidence 9999999999999 77888899999999999999998764
No 46
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.58 E-value=2.3e-14 Score=136.82 Aligned_cols=63 Identities=27% Similarity=0.368 Sum_probs=55.6
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
..+++.++...+++++|||+.||++||+.||.||||+ ++++.+|+.||+++.+++.+|++++|
T Consensus 192 ~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~-na~~~~k~~a~~i~~~~~~~gv~~~i 254 (254)
T PF08282_consen 192 KYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMG-NATPELKKAADYITPSNNDDGVAKAI 254 (254)
T ss_dssp HHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEET-TS-HHHHHHSSEEESSGTCTHHHHHH
T ss_pred HHHhhhcccccceeEEeecccccHhHHhhcCeEEEEc-CCCHHHHHhCCEEecCCCCChHHHhC
Confidence 5566666777899999999999999999999999999 77777799999999999999999875
No 47
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.58 E-value=1.4e-14 Score=136.16 Aligned_cols=148 Identities=22% Similarity=0.251 Sum_probs=99.6
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCccc----Ccc----------ceecccChHHHhhhhH---
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC----NED----------ISLKSLTGKEFMEMHD--- 145 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~----~~~----------~~~~~~~~~~~~~~~~--- 145 (514)
..+.+.+.++|++++++|++++++|||+...+..+.+.+|+... +.. .....+..........
T Consensus 14 ~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (225)
T TIGR01482 14 RAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIAKT 93 (225)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCCCCceEEecccCHHHHHHHHHhcc
Confidence 35889999999999999999999999999999999999985321 111 0011111100000000
Q ss_pred -------------------------H--HHHHhhcCceE-------EEecCh--hhH----HHHHHHHhhCCCEEEEEcC
Q 010234 146 -------------------------K--KAHLRQSGGLL-------FSRAEP--RHK----QEIVRLLKEDGEVVAMTGD 185 (514)
Q Consensus 146 -------------------------~--~~~~~~~~~~i-------~~~~~p--~~k----~~iv~~l~~~~~~v~~iGD 185 (514)
+ ..........+ +....| .+| ..+++.++...+++++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD 173 (225)
T TIGR01482 94 FPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGD 173 (225)
T ss_pred cchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECC
Confidence 0 00000000000 111111 244 4555666777889999999
Q ss_pred CcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchh----HHHHHH
Q 010234 186 GVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFST----IVSAVG 231 (514)
Q Consensus 186 g~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~----i~~~i~ 231 (514)
+.||++|++.||+|+||+ |+.+.+|+.||+|+.+++.+| +.++++
T Consensus 174 ~~NDi~m~~~ag~~vam~-Na~~~~k~~A~~vt~~~~~~G~~~~v~~~l~ 222 (225)
T TIGR01482 174 SENDIDLFEVPGFGVAVA-NAQPELKEWADYVTESPYGEGGAEAIGEILQ 222 (225)
T ss_pred CHhhHHHHHhcCceEEcC-ChhHHHHHhcCeecCCCCCCcHHHHHHHHHH
Confidence 999999999999999999 678888999999999999999 777664
No 48
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.56 E-value=5e-14 Score=135.94 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHhh---CCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHH-----HHhcccccccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKE---DGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEV-----AKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~---~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~-----~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
..++++++. ..++|++||||.||++||+.||+|||||++..+. .+..||+++...+.+|+.+++++
T Consensus 193 ~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~l~~ 266 (271)
T PRK03669 193 NWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGLNREGVHLQDDDPARVYRTQREGPEGWREGLDH 266 (271)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCCCCCCcccccccCCceEeccCCCcHHHHHHHHH
Confidence 667788888 8899999999999999999999999999655331 45579999999999999999864
No 49
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.52 E-value=1.8e-13 Score=131.03 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=56.4
Q ss_pred HHHHHHHhhC--CCEEEEEcCCcCCHHhhhhcCcceeeCCCCc--HHHHhc--c-cccccCCCchhHHHHHHH
Q 010234 167 QEIVRLLKED--GEVVAMTGDGVNDAPALKLADIGIAMGIAGT--EVAKEA--S-DMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l~~~--~~~v~~iGDg~ND~~ml~~A~igvamg~~~~--~~~k~~--a-d~v~~~~~~~~i~~~i~~ 232 (514)
..+++.++.. .+++++|||+.||++||+.||+||||+|+.. +.+|+. | ++|+.+++.+|+++++++
T Consensus 182 ~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~~~~dGva~~l~~ 254 (256)
T TIGR01486 182 NALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPAPGPEGWREALEH 254 (256)
T ss_pred HHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCCCCcHHHHHHHHH
Confidence 5677777777 8999999999999999999999999995542 456886 4 599999999999999865
No 50
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.47 E-value=4.1e-13 Score=128.62 Aligned_cols=63 Identities=32% Similarity=0.384 Sum_probs=54.1
Q ss_pred HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHH
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
..+++.++...+++++|||+.||++|++.||+|+||+ ++.+.+|+.||+++.+++.+||+++|
T Consensus 194 ~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~-na~~~~k~~a~~~~~~n~~dGV~~~l 256 (256)
T TIGR00099 194 QSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG-NADEELKALADYVTDSNNEDGVALAL 256 (256)
T ss_pred HHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEec-CchHHHHHhCCEEecCCCCcchhhhC
Confidence 4444555556789999999999999999999999999 67777899999999999999998754
No 51
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.42 E-value=5.2e-13 Score=117.75 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHH
Q 010234 91 QAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIV 170 (514)
Q Consensus 91 ~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv 170 (514)
.+|+.|+++|+++.++|+++...+....+.+|+..... .....|+....++
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~-----------------------------~~kpkp~~~~~~~ 91 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE-----------------------------GIKKKTEPYAQML 91 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe-----------------------------cCCCCHHHHHHHH
Confidence 78999999999999999999999999999999963211 0134567778889
Q ss_pred HHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHH
Q 010234 171 RLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIV 227 (514)
Q Consensus 171 ~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~ 227 (514)
+.++...+++++|||+.||++|++.||+++||+ ++.+.+|..|++|+.+++.+|+.
T Consensus 92 ~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~-nA~~~lk~~A~~I~~~~~~~g~v 147 (169)
T TIGR02726 92 EEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG-DAVADVKEAAAYVTTARGGHGAV 147 (169)
T ss_pred HHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc-CchHHHHHhCCEEcCCCCCCCHH
Confidence 999988999999999999999999999999999 67777799999999877777654
No 52
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.39 E-value=4.7e-12 Score=122.35 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=53.2
Q ss_pred HHHHHHhhCC-CEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHH----hcc-cccc--cCCCchhHHHHHHH
Q 010234 168 EIVRLLKEDG-EVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAK----EAS-DMVL--ADDDFSTIVSAVGE 232 (514)
Q Consensus 168 ~iv~~l~~~~-~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k----~~a-d~v~--~~~~~~~i~~~i~~ 232 (514)
++.+.++... ++|++|||+.||++|++.||+|+||+ |+.+.+| .+| +.++ ..++.+|+++++++
T Consensus 197 ~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~-NA~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~~ 268 (273)
T PRK00192 197 WLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVP-GPDGPNPPLLPGIADGEFILASAPGPEGWAEAINK 268 (273)
T ss_pred HHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeC-CCCCCCcccCccccCCceEEecCCCcHHHHHHHHH
Confidence 4445556778 99999999999999999999999999 6666657 666 6777 67889999999854
No 53
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.35 E-value=3.1e-12 Score=112.03 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=91.7
Q ss_pred HHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHHH
Q 010234 92 AIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIVR 171 (514)
Q Consensus 92 ~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv~ 171 (514)
+|++|+++|+++.++||++...+..+++.+|+..... .....|+...++++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~-----------------------------~~~~k~~~~~~~~~ 86 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQ-----------------------------GQSNKLIAFSDILE 86 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEe-----------------------------cccchHHHHHHHHH
Confidence 8999999999999999999999999999999864211 01234566677788
Q ss_pred HHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchh-HHHHHH
Q 010234 172 LLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFST-IVSAVG 231 (514)
Q Consensus 172 ~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~-i~~~i~ 231 (514)
.++...++++++||+.||++|++.||++++|. ++.+..+..|++++.++..+| +.++++
T Consensus 87 ~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~v~-~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 146 (154)
T TIGR01670 87 KLALAPENVAYIGDDLIDWPVMEKVGLSVAVA-DAHPLLIPRADYVTRIAGGRGAVREVCE 146 (154)
T ss_pred HcCCCHHHEEEECCCHHHHHHHHHCCCeEecC-CcCHHHHHhCCEEecCCCCCcHHHHHHH
Confidence 88888899999999999999999999999998 666777999999998887665 776664
No 54
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.35 E-value=3.8e-12 Score=124.30 Aligned_cols=134 Identities=17% Similarity=0.251 Sum_probs=98.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcc-ce--ecccChHHHhhhhHHHHHHhhcCceEEE
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNED-IS--LKSLTGKEFMEMHDKKAHLRQSGGLLFS 159 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (514)
-++.|++.+.|+.|++.|+++.++||.....+..+.+++|+...... +. ...+++.. ....+..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v-------------~g~iv~~ 246 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNV-------------LGDIVDA 246 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEe-------------cCccCCc
Confidence 36899999999999999999999999998889999999998542110 00 00000000 0000111
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHH
Q 010234 160 RAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVG 231 (514)
Q Consensus 160 ~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~ 231 (514)
...++--.++.+.++...+++++||||.||++|++.||+|||| ++.+.+++.||.++..++.++++.++-
T Consensus 247 k~K~~~L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~--nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 247 QYKADTLTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY--HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred ccHHHHHHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe--CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 2223333455566666789999999999999999999999999 567777999999999999999998773
No 55
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.28 E-value=3.7e-11 Score=109.98 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=98.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccCh-HHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTG-KEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
++.|++.+.|+.+++.| +++++||.....+..+++++|+....... ..+.+ ..+ . ... ...
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~--l~~~~~g~~------------t-G~~--~~~ 129 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHK--LEIDDSDRV------------V-GYQ--LRQ 129 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhcee--eEEecCCee------------E-Cee--ecC
Confidence 68999999999999975 99999999999999999999996421100 00000 000 0 000 134
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHh
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEG 233 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~g 233 (514)
++.|...++.++..+.+++++|||.||++|++.||+||++. +.+.++++||-...-.+.+.+...+.++
T Consensus 130 ~~~K~~~l~~l~~~~~~~v~vGDs~nDl~ml~~Ag~~ia~~--ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 130 KDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFH--APENVIREFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred cchHHHHHHHHHhhCCCEEEEeCCHHHHHHHHhCCCCEEec--CCHHHHHhCCCCCcccCHHHHHHHHHHH
Confidence 67899999999888889999999999999999999999995 5666677777666667888888888765
No 56
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.23 E-value=4.8e-11 Score=112.83 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=54.7
Q ss_pred HHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhccc----ccccCCCchhHHHHHHH
Q 010234 168 EIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASD----MVLADDDFSTIVSAVGE 232 (514)
Q Consensus 168 ~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad----~v~~~~~~~~i~~~i~~ 232 (514)
.+++.++...+++++|||+.||++|++.+|+||+|+ |+.+.+|+.|+ +|+.+++.+|++++|++
T Consensus 166 ~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~-na~~~~k~~a~~~~~~v~~~~~~~Gv~~~i~~ 233 (236)
T TIGR02471 166 YLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVG-NHDPELEGLRHQQRIYFANNPHAFGILEGINH 233 (236)
T ss_pred HHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEc-CCcHHHHHhhcCCcEEEcCCCChhHHHHHHHh
Confidence 344444555678999999999999999999999999 67777799999 88889999999999965
No 57
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.19 E-value=6.6e-11 Score=108.80 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=87.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.+++|++.+.++.++++|++++++||-...-+.++++.+|++.......... +| . ....++...+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~-dG-~------------ltG~v~g~~~~ 141 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEID-DG-K------------LTGRVVGPICD 141 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEe-CC-E------------EeceeeeeecC
Confidence 5789999999999999999999999999999999999999975332211000 00 0 00122333444
Q ss_pred hhhHHHHH----HHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhccccccc
Q 010234 163 PRHKQEIV----RLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLA 219 (514)
Q Consensus 163 p~~k~~iv----~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~ 219 (514)
.+.|.+.+ +.++...++++++|||.||.|||+.||.++++. +.+..+..|+....
T Consensus 142 ~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n--~~~~l~~~a~~~~~ 200 (212)
T COG0560 142 GEGKAKALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVN--PKPKLRALADVRIW 200 (212)
T ss_pred cchHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeC--cCHHHHHHHHHhcC
Confidence 45665544 444555678999999999999999999999984 55555666766553
No 58
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.19 E-value=1.7e-10 Score=109.88 Aligned_cols=150 Identities=12% Similarity=0.161 Sum_probs=95.9
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCccc------Cccceecc---cChHHH------------
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC------NEDISLKS---LTGKEF------------ 140 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~------~~~~~~~~---~~~~~~------------ 140 (514)
+.++.|.+.+++++++++|++++++|||+...++.+.+++++..+ +....... .....+
T Consensus 19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~~~~ 98 (249)
T TIGR01485 19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAEVPDQHWAEYLSEKWQRDI 98 (249)
T ss_pred ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCCcCCHHHHHHHhcccCHHH
Confidence 345789999999999999999999999999999999998886432 11111000 000000
Q ss_pred -hhhh------------------------H-H--------HHHHhhc--CceE-E-------EecChhhHHHHH----HH
Q 010234 141 -MEMH------------------------D-K--------KAHLRQS--GGLL-F-------SRAEPRHKQEIV----RL 172 (514)
Q Consensus 141 -~~~~------------------------~-~--------~~~~~~~--~~~i-~-------~~~~p~~k~~iv----~~ 172 (514)
..+. . . ....... ...+ . .......|...+ +.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~~ 178 (249)
T TIGR01485 99 VVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQK 178 (249)
T ss_pred HHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHHH
Confidence 0000 0 0 0000000 0000 1 111223454444 44
Q ss_pred HhhCCCEEEEEcCCcCCHHhhhh-cCcceeeCCCCcHHHHhccc-------ccccCCCchhHHHHHHH
Q 010234 173 LKEDGEVVAMTGDGVNDAPALKL-ADIGIAMGIAGTEVAKEASD-------MVLADDDFSTIVSAVGE 232 (514)
Q Consensus 173 l~~~~~~v~~iGDg~ND~~ml~~-A~igvamg~~~~~~~k~~ad-------~v~~~~~~~~i~~~i~~ 232 (514)
++...++++++||+.||++|++. ++.||||+ |+.+.+|+.++ +++.....+|+++++++
T Consensus 179 ~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~-na~~~~k~~~~~~~~~~~~~~~~~~~~Gi~e~l~~ 245 (249)
T TIGR01485 179 LAMEPSQTLVCGDSGNDIELFEIGSVRGVIVS-NAQEELLQWYDENAKDKIYHASERCAGGIIEAIAH 245 (249)
T ss_pred cCCCccCEEEEECChhHHHHHHccCCcEEEEC-CCHHHHHHHHHhcccCcEEEecCCCcHHHHHHHHH
Confidence 45667899999999999999998 67999999 66666676543 77788889999999864
No 59
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.17 E-value=8.4e-11 Score=98.03 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=92.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
++++ ..|+.|.+.||++.++|||+...++.-++++|+..-... -+
T Consensus 38 v~DG--~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~qG---------------------------------~~ 82 (170)
T COG1778 38 VRDG--HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQG---------------------------------IS 82 (170)
T ss_pred ccCc--HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeeec---------------------------------hH
Confidence 3444 678999999999999999999999999999999642111 12
Q ss_pred hH----HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchh----HHHHHHHhHhH
Q 010234 165 HK----QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFST----IVSAVGEGRSI 236 (514)
Q Consensus 165 ~k----~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~----i~~~i~~gr~~ 236 (514)
+| .++.+.++...++|+++||..||.|+|+.+|+++|+. ++.+.+++.||+|+....-.| +.++|-.++..
T Consensus 83 dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~~-dAh~~v~~~a~~Vt~~~GG~GAvREv~dlil~aq~~ 161 (170)
T COG1778 83 DKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAVA-DAHPLLKQRADYVTSKKGGEGAVREVCDLILQAQGK 161 (170)
T ss_pred hHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCccccc-ccCHHHHHhhHhhhhccCcchHHHHHHHHHHHccCc
Confidence 33 4566677778899999999999999999999999999 677777999999997665443 44555555554
Q ss_pred HH
Q 010234 237 YN 238 (514)
Q Consensus 237 ~~ 238 (514)
++
T Consensus 162 ~d 163 (170)
T COG1778 162 LD 163 (170)
T ss_pred HH
Confidence 44
No 60
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.16 E-value=8.5e-11 Score=106.11 Aligned_cols=108 Identities=20% Similarity=0.236 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHH
Q 010234 91 QAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIV 170 (514)
Q Consensus 91 ~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv 170 (514)
.+|+.|+++|+++.++||++...+..+++++|+..... + ....++.-.+++
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~--------g---------------------~~~k~~~l~~~~ 105 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ--------G---------------------QSNKLIAFSDLL 105 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec--------C---------------------CCcHHHHHHHHH
Confidence 68999999999999999999999999999999853210 0 011234556777
Q ss_pred HHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHH
Q 010234 171 RLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVS 228 (514)
Q Consensus 171 ~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~ 228 (514)
+.++..++++++|||+.||++|++.||++++++ ++.+..+..||+++..+..+|...
T Consensus 106 ~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~v~-~~~~~~~~~a~~v~~~~~g~g~~~ 162 (183)
T PRK09484 106 EKLAIAPEQVAYIGDDLIDWPVMEKVGLSVAVA-DAHPLLLPRADYVTRIAGGRGAVR 162 (183)
T ss_pred HHhCCCHHHEEEECCCHHHHHHHHHCCCeEecC-ChhHHHHHhCCEEecCCCCCCHHH
Confidence 788888899999999999999999999999998 677777889999997666555543
No 61
>PLN02382 probable sucrose-phosphatase
Probab=99.09 E-value=1.1e-09 Score=110.97 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=49.1
Q ss_pred HHHHHHH---hhCCCEEEEEcCCcCCHHhhhhcC-cceeeCCCCcHHHHhcc--------ccc-ccCCCchhHHHHHHH
Q 010234 167 QEIVRLL---KEDGEVVAMTGDGVNDAPALKLAD-IGIAMGIAGTEVAKEAS--------DMV-LADDDFSTIVSAVGE 232 (514)
Q Consensus 167 ~~iv~~l---~~~~~~v~~iGDg~ND~~ml~~A~-igvamg~~~~~~~k~~a--------d~v-~~~~~~~~i~~~i~~ 232 (514)
..+++.+ +...+++++|||+.||++||+.+| +||||| |+.+.+|+.+ +++ ..+++.+||.+++++
T Consensus 181 ~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~-NA~~elk~~a~~~~~~~~~~~~a~~~~~~GI~~al~~ 258 (413)
T PLN02382 181 AYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVS-NAQEELLQWYAENAKDNPKIIHATERCAAGIIQAIGH 258 (413)
T ss_pred HHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEc-CCcHHHHHHHHhhccCCCcEEEcCCCCccHHHHHHHH
Confidence 3344444 556789999999999999999999 799999 5666667643 333 246678999999965
No 62
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.06 E-value=5.1e-10 Score=104.55 Aligned_cols=131 Identities=21% Similarity=0.304 Sum_probs=93.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcccee---cccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISL---KSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
++.|++.+.|+.|+++|++++++||.....+..+.+.+|+......... ..+++.. ........
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 151 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLV-------------EGPIVDAS 151 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEe-------------cCcccCCc
Confidence 5899999999999999999999999999999999999998642111000 0000000 00000111
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHH
Q 010234 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSA 229 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~ 229 (514)
+.|.--.++++.++...+++++|||+.||+++++.||++++++ +.+.++++||+++.+.++..++.+
T Consensus 152 ~k~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~--~~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 152 YKGKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAFN--AKPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred ccHHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeC--CCHHHHHhchhccCCCCHHHHHhh
Confidence 1333334555566667789999999999999999999999985 567778899999998887776654
No 63
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.96 E-value=9.2e-09 Score=96.20 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=36.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
..+.++++|++|+++|++++++|||+...+..+.+.+|+.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 4555999999999999999999999999999999999875
No 64
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.94 E-value=9e-09 Score=96.11 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=39.0
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
++...+++.++|++|+++|++++++|||+...+..+.+++|+.
T Consensus 13 ~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 13 PGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 4556778999999999999999999999999999999999973
No 65
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.85 E-value=3e-08 Score=95.01 Aligned_cols=140 Identities=12% Similarity=0.145 Sum_probs=84.5
Q ss_pred CCChhHHHHHHHHHH-cCCcEEEECCCChHHHHHHHHHcCC--cccCccc--------eecccChHHHhhhhHHHH----
Q 010234 84 PPRNEVHQAIEDCRA-AGIRVMVITGDNKNTAEAICREIGV--FECNEDI--------SLKSLTGKEFMEMHDKKA---- 148 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~-~Gi~v~i~TG~~~~~a~~ia~~~gi--~~~~~~~--------~~~~~~~~~~~~~~~~~~---- 148 (514)
.+.+++.++|++|++ .|++++++|||+...+..+.+.+++ ...+... ....+..+....+.+...
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~l~~~~~~~i~~~l~~~~~ 115 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIARDISVQLHTALA 115 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCCeeeccCChhHHHHHHHHHHHHhc
Confidence 678999999999998 7999999999999999988877663 1211111 111111111111100000
Q ss_pred ---------------------------------HHh-hcC--------ceEEEecChhhHHHH----HHHHhhCCCEEEE
Q 010234 149 ---------------------------------HLR-QSG--------GLLFSRAEPRHKQEI----VRLLKEDGEVVAM 182 (514)
Q Consensus 149 ---------------------------------~~~-~~~--------~~i~~~~~p~~k~~i----v~~l~~~~~~v~~ 182 (514)
... ... ..+-.+....+|... ++.++...+.+++
T Consensus 116 ~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~~Kg~al~~ll~~~~~~~~~v~~ 195 (266)
T PRK10187 116 QLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGTNKGEAIAAFMQEAPFAGRTPVF 195 (266)
T ss_pred cCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 000 000 011112222355444 4444455678999
Q ss_pred EcCCcCCHHhhhhc----CcceeeCCCCcHHHHhcccccccCCCchhHHHHH
Q 010234 183 TGDGVNDAPALKLA----DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 183 iGDg~ND~~ml~~A----~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
+||+.||.+||+.+ ++||+||+ +.+. |++.+. +..++...+
T Consensus 196 ~GD~~nD~~mf~~~~~~~g~~vavg~-a~~~----A~~~l~--~~~~v~~~L 240 (266)
T PRK10187 196 VGDDLTDEAGFAVVNRLGGISVKVGT-GATQ----ASWRLA--GVPDVWSWL 240 (266)
T ss_pred EcCCccHHHHHHHHHhcCCeEEEECC-CCCc----CeEeCC--CHHHHHHHH
Confidence 99999999999999 99999994 4333 677664 555555555
No 66
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.82 E-value=1.7e-08 Score=94.18 Aligned_cols=127 Identities=20% Similarity=0.336 Sum_probs=98.6
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
+.++-|++.++++.|+++|++..++|+++...+..+.+..|+......+.. ++ ..-..++
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g----~~----------------~~~~~KP 146 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVG----GD----------------DVPPPKP 146 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEc----CC----------------CCCCCCc
Confidence 456889999999999999999999999999999999999999765443221 00 1223346
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcC---cceeeCCC-CcHHHHhcccccccCCCchhHHHHH
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLAD---IGIAMGIA-GTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~---igvamg~~-~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
+|.....+++.++..+++++||||+.+|+.|-+.|| +||..|.+ ..+.....+|+++. +...+...+
T Consensus 147 ~P~~l~~~~~~~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~--~~~el~~~l 217 (220)
T COG0546 147 DPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVID--SLAELLALL 217 (220)
T ss_pred CHHHHHHHHHHhCCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEEC--CHHHHHHHH
Confidence 778888999999988779999999999999999999 77888854 34455566888875 344444333
No 67
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.82 E-value=3.6e-08 Score=90.99 Aligned_cols=126 Identities=21% Similarity=0.293 Sum_probs=89.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEE--ec
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFS--RA 161 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~ 161 (514)
++.|++.+.++.|+++ ++++++|+.....+..+.+++|+........ ....+ ..+.. ..
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~--~~~~~----------------~~i~~~~~~ 128 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSL--EVDED----------------GMITGYDLR 128 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceE--EECCC----------------CeEECcccc
Confidence 4689999999999999 9999999999999999999999853211000 00000 00100 12
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccc-cccCCCchhHHHHHH
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDM-VLADDDFSTIVSAVG 231 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~-v~~~~~~~~i~~~i~ 231 (514)
.|..|...++.++..++++++||||.||++|.+.||+|++++ ...+.....+++ +. ++...+...++
T Consensus 129 ~p~~k~~~l~~~~~~~~~~v~iGDs~~D~~~~~aa~~~v~~~-~~~~~~~~~~~~~~~--~~~~el~~~l~ 196 (205)
T PRK13582 129 QPDGKRQAVKALKSLGYRVIAAGDSYNDTTMLGEADAGILFR-PPANVIAEFPQFPAV--HTYDELLAAID 196 (205)
T ss_pred ccchHHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCCEEEC-CCHHHHHhCCccccc--CCHHHHHHHHH
Confidence 456788888889888999999999999999999999999886 444444445555 33 34455555443
No 68
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.80 E-value=7.2e-08 Score=100.84 Aligned_cols=47 Identities=9% Similarity=0.119 Sum_probs=40.1
Q ss_pred EEeccc-CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCC
Q 010234 77 GLVGLR-DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV 123 (514)
Q Consensus 77 G~~~~~-~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi 123 (514)
|++.-. +...+.+.++|++|+++|++++++|||+...+..+++++|+
T Consensus 425 GTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 425 GTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred CCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 444433 34667899999999999999999999999999999999986
No 69
>PRK08238 hypothetical protein; Validated
Probab=98.80 E-value=1.4e-06 Score=89.80 Aligned_cols=97 Identities=22% Similarity=0.353 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
+..|++.+.+++++++|++++++|+.+...++.+++.+|+.+. + +..++ ..+..|
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~---V----igsd~------------------~~~~kg 126 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDG---V----FASDG------------------TTNLKG 126 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCE---E----EeCCC------------------ccccCC
Confidence 4679999999999999999999999999999999999997221 1 00000 012334
Q ss_pred hhHHHHHH-HHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcH
Q 010234 164 RHKQEIVR-LLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTE 208 (514)
Q Consensus 164 ~~k~~iv~-~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~ 208 (514)
+.|.+.+. .+++ +.+.++||+.+|++|++.|+-+++++ .+..
T Consensus 127 ~~K~~~l~~~l~~--~~~~yvGDS~~Dlp~~~~A~~av~Vn-~~~~ 169 (479)
T PRK08238 127 AAKAAALVEAFGE--RGFDYAGNSAADLPVWAAARRAIVVG-ASPG 169 (479)
T ss_pred chHHHHHHHHhCc--cCeeEecCCHHHHHHHHhCCCeEEEC-CCHH
Confidence 44544333 3332 33678999999999999999999997 4443
No 70
>PTZ00174 phosphomannomutase; Provisional
Probab=98.73 E-value=1.2e-07 Score=90.11 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhCCCEEEEEcC----CcCCHHhhhhc-CcceeeCCCCcHHHHhcccccc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGD----GVNDAPALKLA-DIGIAMGIAGTEVAKEASDMVL 218 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGD----g~ND~~ml~~A-~igvamg~~~~~~~k~~ad~v~ 218 (514)
.+|..-++.+.+..++|++||| |.||++||+.| -.|++++ |+++.+|..+..+.
T Consensus 187 vsKg~al~~L~~~~~eviafGD~~~~~~NDieMl~~~~~~g~~v~-n~~~~~~~~~~~~~ 245 (247)
T PTZ00174 187 WDKTYCLRHLENDFKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK-NPEDTIKILKELFL 245 (247)
T ss_pred CcHHHHHHHHHhhhhhEEEEcccCCCCCCcHhhhhcCCCceEEeC-CHHHHHHHHHHHhc
Confidence 4677777777666899999999 99999999966 3556667 77888788776544
No 71
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.72 E-value=4.7e-08 Score=89.89 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+.|+.|+++|++++++|+.....+..+++.+|+....... ....+. .. .. ...+....+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~--g~-------~~--p~~~~~~~~ 145 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNE---LVFDEK--GF-------IQ--PDGIVRVTF 145 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEE---EEEcCC--Ce-------Ee--cceeeEEcc
Confidence 58999999999999999999999999999999999999975321110 000000 00 00 001111223
Q ss_pred hhHHHH----HHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhccc
Q 010234 164 RHKQEI----VRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASD 215 (514)
Q Consensus 164 ~~k~~i----v~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad 215 (514)
..|.++ .+.++...++++++||+.||++|++.||++++++ ......+.++|
T Consensus 146 ~~k~~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~-~~~~~~~~a~~ 200 (201)
T TIGR01491 146 DNKGEAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISISLG-DEGHADYLAKD 200 (201)
T ss_pred ccHHHHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEEC-CCccchhhccc
Confidence 344444 4445556788999999999999999999999997 33333333333
No 72
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.66 E-value=9.9e-08 Score=88.10 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=92.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-++.|++.+++++|+++|+++.++||.+...+....+.+|+......+. ..+ .....++.
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~----~~~----------------~~~~~KP~ 133 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVI----GSD----------------EVPRPKPA 133 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEE----ecC----------------cCCCCCCC
Confidence 3678999999999999999999999999999999999999854322111 000 11123556
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc---eeeCCC-CcHHHHhcccccccCCCchhHHHHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG---IAMGIA-GTEVAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig---vamg~~-~~~~~k~~ad~v~~~~~~~~i~~~i 230 (514)
|+--.++++.++..++++++|||+.+|+.+.+.+|+. +..|.. ..+..+..+|+++. +...+..++
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~--~~~~l~~~~ 203 (205)
T TIGR01454 134 PDIVREALRLLDVPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLR--KPQSLLALC 203 (205)
T ss_pred hHHHHHHHHHcCCChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeC--CHHHHHHHh
Confidence 6677888889998899999999999999999999964 444532 22344667888874 444444443
No 73
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=98.64 E-value=1.8e-07 Score=87.31 Aligned_cols=99 Identities=20% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccce--ecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDIS--LKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
++.|++.+.++.|+++|+++.++||.....+..+.+.+ +.. ..+. ...++++. ......
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~--~~i~~n~~~~~~~~----------------~~~~kp 134 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPK--EQIYCNGSDFSGEY----------------ITITWP 134 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCc--CcEEEeEEEecCCe----------------eEEecc
Confidence 68999999999999999999999999999999999987 633 1111 11112211 011111
Q ss_pred Ch----------hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 162 EP----------RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 162 ~p----------~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
.| ..|..+++.++..++++++||||.||++|.+.||+.++
T Consensus 135 ~p~~~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 135 HPCDEHCQNHCGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred CCccccccccCCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 11 24788999999888999999999999999999999776
No 74
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=98.61 E-value=2.4e-07 Score=86.89 Aligned_cols=128 Identities=22% Similarity=0.345 Sum_probs=92.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.++.|++.+.++.|+++|++++++||........+.+.+|+......+ +..+ ..-..+..
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~----~~~~----------------~~~~~kp~ 151 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVV----IGGD----------------SLPNKKPD 151 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEE----EcCC----------------CCCCCCcC
Confidence 468899999999999999999999999999999999999985432211 1100 00112334
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc---ceeeCCC-CcHHHHhcccccccCCCchhHHHHHHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI---GIAMGIA-GTEVAKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i---gvamg~~-~~~~~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
|+--..+++.++.+.+++++|||+.||+++.+.+|+ +|..|.+ ..+.....+++++ ++...+...+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i--~~~~~l~~~l~~ 223 (226)
T PRK13222 152 PAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVI--DHFAELLPLLGL 223 (226)
T ss_pred hHHHHHHHHHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEE--CCHHHHHHHHHH
Confidence 566678888999999999999999999999999997 4433422 2334345677776 466666666644
No 75
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.60 E-value=3.8e-07 Score=84.76 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcccee--cccChHHHhhhhHHHHHHhhcCceEE--
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISL--KSLTGKEFMEMHDKKAHLRQSGGLLF-- 158 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~-- 158 (514)
.+++|++.+.++.|+++|+++.++||.....+..+++.++... .+.. ....+..+.. .......+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~---~i~~n~~~~~~~~~~~--------~~p~~~~~~~ 137 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKD---RIYCNEADFSNEYIHI--------DWPHPCDGTC 137 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcc---cEEeceeEeeCCeeEE--------eCCCCCcccc
Confidence 4689999999999999999999999999999999988874321 1110 1111111000 00000000
Q ss_pred EecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 159 SRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 159 ~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
.......|..+++.++..++.+++||||.||++|++.||+.+|-+
T Consensus 138 ~~~cg~~K~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ar~ 182 (214)
T TIGR03333 138 QNQCGCCKPSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCFARD 182 (214)
T ss_pred ccCCCCCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeEehH
Confidence 000023588999999888899999999999999999999977644
No 76
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.57 E-value=1.8e-07 Score=81.02 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=80.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChH-HHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGK-EFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
+++|++++.+..|++.|.++.++||.-...+.+++.++||+..+..-....+... ++... ...-.-+.
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gf-----------d~~~ptsd 156 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGF-----------DTNEPTSD 156 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCccccc-----------ccCCcccc
Confidence 5899999999999999999999999999999999999999763321111100000 00000 00000112
Q ss_pred hhhHHHHHHHHhhC--CCEEEEEcCCcCCHHhhhhcCcceeeCCC-CcHHHHhcccc
Q 010234 163 PRHKQEIVRLLKED--GEVVAMTGDGVNDAPALKLADIGIAMGIA-GTEVAKEASDM 216 (514)
Q Consensus 163 p~~k~~iv~~l~~~--~~~v~~iGDg~ND~~ml~~A~igvamg~~-~~~~~k~~ad~ 216 (514)
...|.+++..+++. .+.++|||||.||++|+..|+.=++.|.+ -.+.+|..|+.
T Consensus 157 sggKa~~i~~lrk~~~~~~~~mvGDGatDlea~~pa~afi~~~g~~~r~~vk~nak~ 213 (227)
T KOG1615|consen 157 SGGKAEVIALLRKNYNYKTIVMVGDGATDLEAMPPADAFIGFGGNVIREGVKANAKW 213 (227)
T ss_pred CCccHHHHHHHHhCCChheeEEecCCccccccCCchhhhhccCCceEcHhhHhccHH
Confidence 24677788877764 46789999999999999998866665522 22333444443
No 77
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.55 E-value=3.5e-07 Score=87.04 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=92.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-++.|++.++++.|+++|+++.++|+.+...+....+.+|+......+ +.++ ..-..++.
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~i----v~~~----------------~~~~~KP~ 166 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAV----IIGS----------------ECEHAKPH 166 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEE----EecC----------------cCCCCCCC
Confidence 357899999999999999999999999999999999999986543321 1111 11123566
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc---ceeeCCCCcHHHHhcccccccCCCchhHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI---GIAMGIAGTEVAKEASDMVLADDDFSTIV 227 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i---gvamg~~~~~~~k~~ad~v~~~~~~~~i~ 227 (514)
|+--..+++.++..++++++|||+.+|+.+-+.||+ ++.-|....+.....+|+++.+.....+.
T Consensus 167 p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~~~ 234 (248)
T PLN02770 167 PDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPKLW 234 (248)
T ss_pred hHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhHHH
Confidence 777788899999999999999999999999999995 44444222223344688888765543333
No 78
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.54 E-value=1.4e-06 Score=82.43 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=38.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
+...+.+.++|++|+++||+++++|||+...+..+.+++|+.
T Consensus 17 ~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 17 FNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 346788999999999999999999999999999999999984
No 79
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.52 E-value=4.5e-07 Score=84.31 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=90.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++++.|+++|+++.++||.....+....+.+|+......+. ..+ ..-..++.|
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~----~~~----------------~~~~~Kp~p 141 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVI----TLD----------------DVEHAKPDP 141 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEE----ecC----------------cCCCCCCCc
Confidence 478999999999999999999999999999999999999865332211 100 011134566
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc---ceeeCCCCcH-HHHhcccccccCCCchhHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI---GIAMGIAGTE-VAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i---gvamg~~~~~-~~k~~ad~v~~~~~~~~i~~~i 230 (514)
+--.++++.++..++++++|||+.+|+.+.++||+ +|+.|....+ .....+|+++. +...+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~--~~~~l~~~i 210 (214)
T PRK13288 142 EPVLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLD--KMSDLLAIV 210 (214)
T ss_pred HHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEEC--CHHHHHHHH
Confidence 77788889998889999999999999999999996 4444522223 32345777764 455555443
No 80
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.51 E-value=7.3e-07 Score=82.22 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG 122 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~g 122 (514)
++.+++.++|++|+++|++++++|||....+..+.+.++
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~ 55 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP 55 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC
Confidence 588999999999999999999999999999999988754
No 81
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.50 E-value=2.5e-07 Score=78.83 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=79.8
Q ss_pred cccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEE
Q 010234 80 GLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFS 159 (514)
Q Consensus 80 ~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (514)
....++.+++.+.+++|+++|++++++||+....+....+.+|+......+... ......................
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~ 95 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITS----NGAAIYYPKEGLFLGGGPFDIG 95 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheecc----chhhhhcccccccccccccccC
Confidence 344578999999999999999999999999999999999999874322211100 0000000000000111233444
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcC
Q 010234 160 RAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLAD 197 (514)
Q Consensus 160 ~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ 197 (514)
+..++.+..+.+.++...+.++++||+.+|++|++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g 133 (139)
T cd01427 96 KPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAG 133 (139)
T ss_pred CCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcC
Confidence 66777788888898888899999999999999999955
No 82
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.49 E-value=3.4e-07 Score=85.01 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++++.|+++|+++.++|+.+...+..+.+..|+......+. .++ ..-..+..|
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~----~~~----------------~~~~~Kp~p 144 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLI----GGD----------------SLAQRKPHP 144 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEE----ecC----------------CCCCCCCCh
Confidence 678999999999999999999999999999999999999864322211 000 011124556
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee---eCCCCc-HHHHhccccccc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA---MGIAGT-EVAKEASDMVLA 219 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva---mg~~~~-~~~k~~ad~v~~ 219 (514)
+--.++++.++..++++++|||+.+|+.+.+.||+.+. -|.... +.....||+++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~ 204 (213)
T TIGR01449 145 DPLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYD 204 (213)
T ss_pred HHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeC
Confidence 66788899999999999999999999999999996532 242222 232345777764
No 83
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.49 E-value=5.5e-07 Score=86.80 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=89.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.++.|++.++|+.|+++|++++++||.+...+..+.+..|+......+. .++ ..-..+..
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~----~~d----------------~~~~~Kp~ 159 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWII----GGD----------------TLPQKKPD 159 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEE----ecC----------------CCCCCCCC
Confidence 4678999999999999999999999999999999988888854322110 000 00112445
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc---ceeeCCCCcH-HHHhcccccccCCCchhHHHHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI---GIAMGIAGTE-VAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i---gvamg~~~~~-~~k~~ad~v~~~~~~~~i~~~i 230 (514)
|+--..+++.++..++++++|||+.||+.+.+.||+ +|+.|.+..+ ..+..+|+++. +...+.+++
T Consensus 160 p~~~~~~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~--~l~el~~~~ 229 (272)
T PRK13223 160 PAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVID--DLRALLPGC 229 (272)
T ss_pred cHHHHHHHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEEC--CHHHHHHHH
Confidence 555678888888889999999999999999999996 3444422222 33456788774 444454443
No 84
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.49 E-value=3e-07 Score=83.76 Aligned_cols=92 Identities=25% Similarity=0.420 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh--
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR-- 164 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~-- 164 (514)
+++.+.|+.++++|++++|+||.+...+.++++.+|+.......... .... ......+.++.
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~-~~~~---------------~~~~~~~~~~~~~ 155 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNEL-FDNG---------------GGIFTGRITGSNC 155 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEE-ECTT---------------CCEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEee-eecc---------------cceeeeeECCCCC
Confidence 77779999999999999999999999999999999997532111000 0000 11223333333
Q ss_pred -hHHHHHHHH------hhCCCEEEEEcCCcCCHHhhh
Q 010234 165 -HKQEIVRLL------KEDGEVVAMTGDGVNDAPALK 194 (514)
Q Consensus 165 -~k~~iv~~l------~~~~~~v~~iGDg~ND~~ml~ 194 (514)
.|.+.++.+ +...+.++++|||.||++|+|
T Consensus 156 ~~K~~~l~~~~~~~~~~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 156 GGKAEALKELYIRDEEDIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp SHHHHHHHHHHHHHHHTHTCCEEEEEESSGGGHHHHH
T ss_pred CcHHHHHHHHHHHhhcCCCCCeEEEEECCHHHHHHhC
Confidence 498999988 567899999999999999986
No 85
>PLN02954 phosphoserine phosphatase
Probab=98.46 E-value=1.1e-06 Score=82.43 Aligned_cols=118 Identities=20% Similarity=0.259 Sum_probs=77.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceec--ccChHHHhhhhHHHHHHhhcCceEEEe-
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLK--SLTGKEFMEMHDKKAHLRQSGGLLFSR- 160 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~- 160 (514)
++.|++.++++.|+++|+++.++||.....+..+++.+|+.... +... ....+ ..+...
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~--~~~~~~~~~~~----------------g~~~g~~ 145 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPEN--IFANQILFGDS----------------GEYAGFD 145 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhh--EEEeEEEEcCC----------------CcEECcc
Confidence 47899999999999999999999999999999999999985310 0000 00000 000000
Q ss_pred -----cChhhHHHHHHHHhhC--CCEEEEEcCCcCCHHhhhhcC--cceeeCCCC-cHHHHhccccccc
Q 010234 161 -----AEPRHKQEIVRLLKED--GEVVAMTGDGVNDAPALKLAD--IGIAMGIAG-TEVAKEASDMVLA 219 (514)
Q Consensus 161 -----~~p~~k~~iv~~l~~~--~~~v~~iGDg~ND~~ml~~A~--igvamg~~~-~~~~k~~ad~v~~ 219 (514)
+....|.+.++.+... .+++++|||+.||+.|.+.++ ++++.|... .+.....+|+++.
T Consensus 146 ~~~~~~~~~~K~~~i~~~~~~~~~~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 214 (224)
T PLN02954 146 ENEPTSRSGGKAEAVQHIKKKHGYKTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVT 214 (224)
T ss_pred CCCcccCCccHHHHHHHHHHHcCCCceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEEC
Confidence 0122355555555433 468999999999999988855 445555222 2334556888875
No 86
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.46 E-value=4.9e-07 Score=84.54 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=79.1
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.++.|++.++|+.|+++|++++++|+........+.+.+|+......+. .++ ..-..+..
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~----~~~----------------~~~~~Kp~ 150 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALA----SAE----------------KLPYSKPH 150 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEE----Ecc----------------cCCCCCCC
Confidence 4688999999999999999999999999999999999999865433211 100 11123456
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
|+.-..+++.++..++++++|||+.||+++.+.||+..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG~~~i 189 (222)
T PRK10826 151 PEVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAARMRSI 189 (222)
T ss_pred HHHHHHHHHHcCCCHHHeEEEcCChhhHHHHHHcCCEEE
Confidence 667788889999899999999999999999999997643
No 87
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.45 E-value=5.7e-07 Score=82.76 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=74.1
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCcc-cee---cccChHHHhhhhHHHHHHhhcCceE
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNED-ISL---KSLTGKEFMEMHDKKAHLRQSGGLL 157 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~i 157 (514)
..++.|++.+.|+.++++|++++++||.....+..+++.+|+...... +.. ...+|. ..
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~-----------------~~ 147 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGN-----------------ID 147 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCC-----------------cc
Confidence 346899999999999999999999999999999999999998642111 000 000000 00
Q ss_pred EEecChhhHHHHHHHH----hhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 158 FSRAEPRHKQEIVRLL----KEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l----~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
-..+..+.|.+.++.+ +...++++++||+.+|++|++.||.++++.
T Consensus 148 ~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 148 GNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred CCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 0112334555544433 334568999999999999999999999886
No 88
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.44 E-value=8.3e-07 Score=80.56 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=76.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecc--cChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKS--LTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
-++.|++.+.++.|++.|+++.++|+.+...+..+.+..|+......+.... ..+.... ........-+.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~--------~~~~~~~~~~~ 142 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRH--------IVWPHHCHGCC 142 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcE--------EEecCCCCccC
Confidence 4789999999999999999999999999999999999998854322221100 0000000 00000000011
Q ss_pred c--ChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCccee
Q 010234 161 A--EPRHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 161 ~--~p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
. ....|.++++.++.. +++++++|||.||++|.+.||+-.|
T Consensus 143 ~~~~g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~a 186 (188)
T TIGR01489 143 SCPCGCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVFA 186 (188)
T ss_pred cCCCCCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCcccc
Confidence 1 123588899998887 8999999999999999999987654
No 89
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.44 E-value=7.7e-07 Score=83.59 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=86.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+......+ +.++ ..-..++.
T Consensus 94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i----~~~~----------------~~~~~KP~ 153 (229)
T PRK13226 94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVL----IGGD----------------TLAERKPH 153 (229)
T ss_pred CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEE----EecC----------------cCCCCCCC
Confidence 367899999999999999999999999998888888888885432211 1110 11123566
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc---eeeCCC-Cc-HHHHhccccccc
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG---IAMGIA-GT-EVAKEASDMVLA 219 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig---vamg~~-~~-~~~k~~ad~v~~ 219 (514)
|+--.++++.++..++++++|||+.+|+.+.+.||+. |..|.. .. +.....+|+++.
T Consensus 154 p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~ 215 (229)
T PRK13226 154 PLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVE 215 (229)
T ss_pred HHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeC
Confidence 7777889999999999999999999999999999954 334422 11 232345788774
No 90
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.38 E-value=2.4e-06 Score=82.06 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++++.|+++|+++.++|+.....+....+.+|+......+ ..+++ . ...|
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~v----i~~~~-----------------~--~~k~ 198 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVV----QAGTP-----------------I--LSKR 198 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEE----EecCC-----------------C--CCCH
Confidence 57899999999999999999999999999999999999986533211 11110 0 0123
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc---eeeCCCCcH-HHHhcccccccCCCchhHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG---IAMGIAGTE-VAKEASDMVLADDDFSTIVSAV 230 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig---vamg~~~~~-~~k~~ad~v~~~~~~~~i~~~i 230 (514)
+.-..+++.++..++++++|||+.+|+.+.+.||+- |.-|.+..+ .....+|+++. +...+.+.+
T Consensus 199 ~~~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~--~~~eL~~~~ 267 (273)
T PRK13225 199 RALSQLVAREGWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLE--TPSDLLQAV 267 (273)
T ss_pred HHHHHHHHHhCcChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEEC--CHHHHHHHH
Confidence 444666777777889999999999999999999954 444533333 33445888774 445555443
No 91
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.34 E-value=2.4e-06 Score=80.97 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=47.9
Q ss_pred cChhhHHHHHHHHhh----CCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHH----HHhccc----ccccCCCchhHHH
Q 010234 161 AEPRHKQEIVRLLKE----DGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEV----AKEASD----MVLADDDFSTIVS 228 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~----~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~----~k~~ad----~v~~~~~~~~i~~ 228 (514)
+...+|...++.+.. ..++|+++||+.||.+||..++.||.+||+..+. .....+ |....+.-.||++
T Consensus 161 P~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL~~~~~~vvV~Na~~e~~~~~~~~~~~~~~iy~a~~~~a~GIle 240 (247)
T PF05116_consen 161 PKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEMLEGGDHGVVVGNAQPELLSWLLEKLRQQERIYFAQGPYAAGILE 240 (247)
T ss_dssp ETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHHCCSSEEEE-TTS-HHHHHHHHHCC-TTE--EE-SS-THHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHHcCcCCEEEEcCCCHHHHHHHHHhcccCCceEecCCCCcHHHHH
Confidence 334567666665544 4678999999999999999999999999655551 222221 5666777889998
Q ss_pred HHHH
Q 010234 229 AVGE 232 (514)
Q Consensus 229 ~i~~ 232 (514)
.++|
T Consensus 241 gl~~ 244 (247)
T PF05116_consen 241 GLQH 244 (247)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 92
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.34 E-value=1.1e-06 Score=78.98 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEE--Eec
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLF--SRA 161 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~ 161 (514)
++.|++.+.++.++++|++++++||.....+..+++.+|+...........-.| . + . .... ..+
T Consensus 73 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g-~---~-------~---g~~~~~~~~ 138 (177)
T TIGR01488 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNG-L---L-------T---GPIEGQVNP 138 (177)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCC-E---E-------e---CccCCcccC
Confidence 367999999999999999999999999999999999999853211100000000 0 0 0 0000 123
Q ss_pred ChhhHHHHHHHHhh----CCCEEEEEcCCcCCHHhhhhc
Q 010234 162 EPRHKQEIVRLLKE----DGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 162 ~p~~k~~iv~~l~~----~~~~v~~iGDg~ND~~ml~~A 196 (514)
.+..|.++++.+.. ..++++++|||.||++|++.|
T Consensus 139 ~~~~K~~~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 139 EGECKGKVLKELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred CcchHHHHHHHHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 34667777766543 357899999999999999875
No 93
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.34 E-value=1.7e-06 Score=82.66 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccC-ccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECN-EDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
++.|++.+.|+.|+++|+++.++||.+...+..+.+.+|+.... ..+ +.++ ..-..++.
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~i----i~~~----------------~~~~~KP~ 158 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYN----VTTD----------------DVPAGRPA 158 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceE----Eccc----------------cCCCCCCC
Confidence 57899999999999999999999999999999999999886532 111 1111 11123566
Q ss_pred hhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCc---ceeeC
Q 010234 163 PRHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADI---GIAMG 203 (514)
Q Consensus 163 p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~i---gvamg 203 (514)
|+--...++.++.. ++++++|||+.+|+.+-+.||+ +|..|
T Consensus 159 p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g 203 (253)
T TIGR01422 159 PWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILS 203 (253)
T ss_pred HHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecC
Confidence 77778888899874 8899999999999999999994 45445
No 94
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.27 E-value=2.5e-06 Score=81.44 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++|+.|+++|+++.++|+.+...+..+.+.+|+......+ ++++ ..-..++.|
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~i----i~~~----------------d~~~~KP~P 168 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVV----LAAE----------------DVYRGKPDP 168 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEE----Eecc----------------cCCCCCCCH
Confidence 57899999999999999999999999999999999999986543322 1111 111235667
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce-eeCCCCcHHHHhcccccccC
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI-AMGIAGTEVAKEASDMVLAD 220 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv-amg~~~~~~~k~~ad~v~~~ 220 (514)
+--...++.++...+++++|||+.+|+.+-+.||+.+ ++...........+|+++.+
T Consensus 169 e~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g~~~~~~l~~ad~vi~~ 226 (260)
T PLN03243 169 EMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAGKHPVYELSAGDLVVRR 226 (260)
T ss_pred HHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcCCEEEEEecCCchhhhccCCEEeCC
Confidence 7778899999999999999999999999999999632 22212222223346776543
No 95
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.26 E-value=9.2e-06 Score=76.99 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=86.5
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-+++||+.+.++.|+++|+++.++||.....+..+.+++|+...+..+....+.-. .+...-....
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~--------------~dGvltG~~~ 185 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFD--------------EDGVLKGFKG 185 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEEC--------------CCCeEeCCCC
Confidence 46899999999999999999999999999999999999998654433321111100 0011111111
Q ss_pred h----hhHHH-----HHHHHh--hCCCEEEEEcCCcCCHHhhhhcC-----cceeeCCCCcH----HHHhcccccccCCC
Q 010234 163 P----RHKQE-----IVRLLK--EDGEVVAMTGDGVNDAPALKLAD-----IGIAMGIAGTE----VAKEASDMVLADDD 222 (514)
Q Consensus 163 p----~~k~~-----iv~~l~--~~~~~v~~iGDg~ND~~ml~~A~-----igvamg~~~~~----~~k~~ad~v~~~~~ 222 (514)
| ..|.+ ..+.++ ...++++++|||.||++|..-.. +.|..=|...+ .-+++-|+|+.++.
T Consensus 186 P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~ 265 (277)
T TIGR01544 186 PLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDE 265 (277)
T ss_pred CcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCC
Confidence 2 23333 334455 56788999999999999966551 22222233333 34667799998776
Q ss_pred chhHHHHH
Q 010234 223 FSTIVSAV 230 (514)
Q Consensus 223 ~~~i~~~i 230 (514)
--.++..|
T Consensus 266 t~~v~~~i 273 (277)
T TIGR01544 266 TLEVANSI 273 (277)
T ss_pred CchHHHHH
Confidence 66666554
No 96
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.26 E-value=4.3e-06 Score=80.51 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++|+.|+++|+++.++||.....+..+.+..|+...... ..+.++ ..-..++.|
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d---~i~~~~----------------~~~~~KP~p 161 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPD---HVVTTD----------------DVPAGRPYP 161 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCce---EEEcCC----------------cCCCCCCCh
Confidence 5789999999999999999999999999998888888776542111 011111 111234566
Q ss_pred hhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCc---ceeeC
Q 010234 164 RHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADI---GIAMG 203 (514)
Q Consensus 164 ~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~i---gvamg 203 (514)
+--..+++.++.. .+++++|||+.+|+.+-+.||+ ||..|
T Consensus 162 ~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g 205 (267)
T PRK13478 162 WMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILS 205 (267)
T ss_pred HHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccC
Confidence 7778888888875 5899999999999999999995 56555
No 97
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.25 E-value=1.2e-05 Score=88.54 Aligned_cols=141 Identities=18% Similarity=0.266 Sum_probs=87.3
Q ss_pred CCChhHHHHHHHHHH-cCCcEEEECCCChHHHHHHHHHcCC--cccCccce--------ecccChHHHhh----hhH---
Q 010234 84 PPRNEVHQAIEDCRA-AGIRVMVITGDNKNTAEAICREIGV--FECNEDIS--------LKSLTGKEFME----MHD--- 145 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~-~Gi~v~i~TG~~~~~a~~ia~~~gi--~~~~~~~~--------~~~~~~~~~~~----~~~--- 145 (514)
.+.+++.++|++|.+ .|+.|+++|||+...........++ ...++... ........+.. +.+
T Consensus 514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i~~~~~~w~~~~~~~~~w~~~v~~il~~~~ 593 (726)
T PRK14501 514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAEHGAWSRAPGGEWQLLEPVATEWKDAVRPILEEFV 593 (726)
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEEeCCCCceEECCCcchhHHHHHHHHHHHHH
Confidence 478999999999999 5999999999999999888765553 22221110 00000100000 000
Q ss_pred -------------------------------H--HHHHhh-----------cCceEEEecChhhHHHHHHHHhh--CCCE
Q 010234 146 -------------------------------K--KAHLRQ-----------SGGLLFSRAEPRHKQEIVRLLKE--DGEV 179 (514)
Q Consensus 146 -------------------------------~--~~~~~~-----------~~~~i~~~~~p~~k~~iv~~l~~--~~~~ 179 (514)
. ...+.. .+..+-.++...+|...++.+.+ ..+.
T Consensus 594 ~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~~~veV~p~~vnKG~al~~ll~~~~~d~ 673 (726)
T PRK14501 594 DRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAPLEVLRGNKVVEVRPAGVNKGRAVRRLLEAGPYDF 673 (726)
T ss_pred hcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECCeEEEEEECCCCHHHHHHHHHhcCCCCE
Confidence 0 000000 01112233344577777766654 3578
Q ss_pred EEEEcCCcCCHHhhhhc---CcceeeCCCCcHHHHhcccccccCCCchhHHHHHH
Q 010234 180 VAMTGDGVNDAPALKLA---DIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVG 231 (514)
Q Consensus 180 v~~iGDg~ND~~ml~~A---~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~ 231 (514)
++++||+.||.+||+.+ +++|+||+ + +.+|++.+.++ +++..+++
T Consensus 674 vl~~GD~~nDe~Mf~~~~~~~~~v~vG~-~----~s~A~~~l~~~--~eV~~~L~ 721 (726)
T PRK14501 674 VLAIGDDTTDEDMFRALPETAITVKVGP-G----ESRARYRLPSQ--REVRELLR 721 (726)
T ss_pred EEEECCCCChHHHHHhcccCceEEEECC-C----CCcceEeCCCH--HHHHHHHH
Confidence 99999999999999996 69999994 3 45688888754 45666664
No 98
>PRK11590 hypothetical protein; Provisional
Probab=98.20 E-value=7.5e-06 Score=75.84 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCChhHHHHH-HHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAI-EDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I-~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.+.|++.+.| +.+++.|++++++|+.+...+..+++.+|+.... .+....+.. .......-..+.
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~-~~i~t~l~~-------------~~tg~~~g~~c~ 160 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRV-NLIASQMQR-------------RYGGWVLTLRCL 160 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccC-ceEEEEEEE-------------EEccEECCccCC
Confidence 4589999999 5688899999999999999999999999862211 111111100 000011122355
Q ss_pred hhhHHHHHHH-HhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 163 PRHKQEIVRL-LKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 163 p~~k~~iv~~-l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
.+.|..-++. ++...+...+-||+.||.|||+.|+.+++++
T Consensus 161 g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vn 202 (211)
T PRK11590 161 GHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVT 202 (211)
T ss_pred ChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEEEC
Confidence 5777665554 4656667789999999999999999999985
No 99
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.16 E-value=6.1e-06 Score=77.02 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=77.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc--ccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF--ECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
.++.||+.+.++.|+++|+++.++||.....+....+.+|+. .....+ +...+ .-..+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i----~~~~~----------------~~~~K 145 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAV----VCPSD----------------VAAGR 145 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEE----EcCCc----------------CCCCC
Confidence 368999999999999999999999999999999999999986 322221 11111 01124
Q ss_pred cChhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCcce
Q 010234 161 AEPRHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
+.|+--..+++.++.. ++++++|||+.+|+.+-+.||+.+
T Consensus 146 P~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 146 PAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred CCHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 5667778888888876 689999999999999999999886
No 100
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=98.16 E-value=1e-05 Score=74.68 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCChhHHHHHH-HHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIE-DCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~-~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.+.|++.+.|+ .++++|++++++|+.+...++.+++..++......+ ...+... ......-..+.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i-~t~le~~-------------~gg~~~g~~c~ 159 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLI-ASQIERG-------------NGGWVLPLRCL 159 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEE-EEEeEEe-------------CCceEcCccCC
Confidence 57899999996 788899999999999999999999886653311111 1100000 00011222345
Q ss_pred hhhHHHHHH-HHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 163 PRHKQEIVR-LLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 163 p~~k~~iv~-~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
.+.|.+-++ .++...+...+-||+.||.|||+.||.++++.
T Consensus 160 g~~Kv~rl~~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vn 201 (210)
T TIGR01545 160 GHEKVAQLEQKIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVS 201 (210)
T ss_pred ChHHHHHHHHHhCCChhheEEecCCcccHHHHHhCCCcEEEC
Confidence 567766555 44545556789999999999999999999984
No 101
>PRK11587 putative phosphatase; Provisional
Probab=98.15 E-value=7.9e-06 Score=76.16 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++|+.|+++|+++.++|+.+...+....+..|+... .. .+++++ .-..++.|
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~-~~----i~~~~~----------------~~~~KP~p 141 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAP-EV----FVTAER----------------VKRGKPEP 141 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCc-cE----EEEHHH----------------hcCCCCCc
Confidence 5789999999999999999999999988777777777776321 11 111111 11235667
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc-eeeCCCCcHHHHhcccccccC
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG-IAMGIAGTEVAKEASDMVLAD 220 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig-vamg~~~~~~~k~~ad~v~~~ 220 (514)
+--...++.++..++++++|||+.+|+.+-+.||+. |++...........+|+++.+
T Consensus 142 ~~~~~~~~~~g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~ 199 (218)
T PRK11587 142 DAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLDEVDLVLHS 199 (218)
T ss_pred HHHHHHHHHcCCCcccEEEEecchhhhHHHHHCCCEEEEECCCCchhhhccCCEEecc
Confidence 777888899999999999999999999999999974 445422222223346666544
No 102
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.11 E-value=1.2e-05 Score=79.82 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.||+.+.++.|+++|+++.++|+.+...+..+.+.+|+......+. .++ .....+..|
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv----~sd----------------dv~~~KP~P 275 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIV----AAE----------------DVYRGKPDP 275 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEE----ecC----------------cCCCCCCCH
Confidence 578999999999999999999999999999999999999865433221 111 111234566
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc-eeeCCCCcHHHHhcccccccC
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG-IAMGIAGTEVAKEASDMVLAD 220 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig-vamg~~~~~~~k~~ad~v~~~ 220 (514)
+--...++.++..++++++|||+.+|+.+-+.||+- |++...........||+++.+
T Consensus 276 eifl~A~~~lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~~l~~Ad~iI~s 333 (381)
T PLN02575 276 EMFIYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIYELGAADLVVRR 333 (381)
T ss_pred HHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChhHhcCCCEEECC
Confidence 777888999999999999999999999999999964 223311112212347777643
No 103
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.09 E-value=9.5e-06 Score=78.72 Aligned_cols=120 Identities=20% Similarity=0.210 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+.++.|+++|+++.++|+.+......+.+..+......... .+.+++ .-..++.|
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~--~v~~~~----------------~~~~KP~p 205 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLD--VFAGDD----------------VPKKKPDP 205 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceE--EEeccc----------------cCCCCCCH
Confidence 578999999999999999999999999888888777653221111100 011111 11235566
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCC---cHHHHhcccccccCCC
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAG---TEVAKEASDMVLADDD 222 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~---~~~~k~~ad~v~~~~~ 222 (514)
+--..+++.++..++++++|||+.+|+.+-+.||+.+..-..+ .+. ...+|+++.+..
T Consensus 206 ~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~-l~~ad~vi~~~~ 266 (286)
T PLN02779 206 DIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADED-FSGADAVFDCLG 266 (286)
T ss_pred HHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccc-cCCCcEEECChh
Confidence 7778899999999999999999999999999999654322122 222 234777765433
No 104
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.09 E-value=1.5e-05 Score=71.96 Aligned_cols=99 Identities=22% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCCh---------------HHHHHHHHHcCCcccCccceecccChHHHhhhhHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNK---------------NTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKA 148 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~---------------~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (514)
.+.|++.+++++|+++|+++.++|+.+. .......+..|+.. ..+......+.
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f--~~i~~~~~~~~---------- 96 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRL--DGIYYCPHHPE---------- 96 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCcc--ceEEECCCCCC----------
Confidence 3679999999999999999999998763 11222334444410 00000000000
Q ss_pred HHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 149 HLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 149 ~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
+..-..++.|+--..+++.++...+++++|||+.+|+.+-+.||+.
T Consensus 97 -----~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~ 142 (181)
T PRK08942 97 -----DGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVT 142 (181)
T ss_pred -----CCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCe
Confidence 0112235567777888999999999999999999999999999964
No 105
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.06 E-value=1.1e-05 Score=68.75 Aligned_cols=93 Identities=22% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCC--------hHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCc
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDN--------KNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGG 155 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~--------~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
++.|++.++++.|+++|++++++|+.. ...+..+.+.+|+..... ...+
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~------------------ 81 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL-----YACP------------------ 81 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE-----EECC------------------
Confidence 578999999999999999999999998 777888888888742110 0000
Q ss_pred eEEEecChhhHHHHHHHH-hhCCCEEEEEcC-CcCCHHhhhhcCcce
Q 010234 156 LLFSRAEPRHKQEIVRLL-KEDGEVVAMTGD-GVNDAPALKLADIGI 200 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l-~~~~~~v~~iGD-g~ND~~ml~~A~igv 200 (514)
-..++.|+.-..+++.+ +..++++++||| ..+|+.+.+.+|+-.
T Consensus 82 -~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~ 127 (132)
T TIGR01662 82 -HCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAF 127 (132)
T ss_pred -CCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeE
Confidence 01244566667888888 488999999999 699999999999643
No 106
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.04 E-value=1.3e-05 Score=73.40 Aligned_cols=93 Identities=17% Similarity=0.072 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
+++.++..++++.|+++|+++.++||.+...+..+.+.+|+......+. ..+ .... ++.
T Consensus 105 ~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~----~~~----------------~~~~-KP~ 163 (197)
T TIGR01548 105 DETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQI----WME----------------DCPP-KPN 163 (197)
T ss_pred cccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEE----eec----------------CCCC-CcC
Confidence 3456667999999999999999999999999999999999865332211 100 1111 566
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhc
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A 196 (514)
|+....+++.++..++++++|||+.+|+.+-+.|
T Consensus 164 p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 164 PEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 7777888899999999999999999999887654
No 107
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.03 E-value=1.8e-05 Score=72.53 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+++++|+++|++++++|+.+...+....+.+|+......+ +..++ .-..++.|
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i----~~s~~----------------~~~~KP~~ 151 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAV----LSADA----------------VRAYKPAP 151 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhhee----Eehhh----------------cCCCCCCH
Confidence 57899999999999999999999999999999999999985432221 11111 01124456
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
+--..+++.++..++++++|||+.+|+.+-+.+|+...
T Consensus 152 ~~~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 152 QVYQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred HHHHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEE
Confidence 66688888999999999999999999999999997643
No 108
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.02 E-value=1.3e-05 Score=74.77 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++|+.|+++|++++++|+.+...+....+.+|+......+. .++ ..-..++.|
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~----~~~----------------~~~~~KP~~ 153 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVI----TSE----------------EEGVEKPHP 153 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEE----Eec----------------cCCCCCCCH
Confidence 678999999999999999999999999888888889999865332211 000 011234566
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhcCcc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLADIG 199 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A~ig 199 (514)
+--..+++.++..++++++|||+. +|+.+-+.||+-
T Consensus 154 ~~~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~ 190 (221)
T TIGR02253 154 KIFYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMK 190 (221)
T ss_pred HHHHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCE
Confidence 667888899998899999999998 999999999963
No 109
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.01 E-value=1.4e-05 Score=78.42 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=77.8
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcc-cCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFE-CNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
.+++.+++.++|++|+++|++++++||++...+..+.+.+|+.. ....+. +.+ .....++... -.+
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~-----~~~-----~~~~~~~~~~---~~k 251 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLI-----GRP-----PDMHFQREQG---DKR 251 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhh-----CCc-----chhhhcccCC---CCC
Confidence 56789999999999999999999999999999999999998854 211110 000 0000010100 125
Q ss_pred cChhhHHHHHHHHhh-CCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 161 AEPRHKQEIVRLLKE-DGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~-~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
..|+-+.+.++.+.. ..+++++|||+.+|+.+-+.||+.+
T Consensus 252 p~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~ 292 (300)
T PHA02530 252 PDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLEC 292 (300)
T ss_pred CcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeE
Confidence 667788888888766 5689999999999999999999754
No 110
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.95 E-value=3.8e-05 Score=71.67 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=61.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCC----hHHHHHHHHHcCC--cccCccceecccChHHHhhhhHHHHHHhhcCce
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDN----KNTAEAICREIGV--FECNEDISLKSLTGKEFMEMHDKKAHLRQSGGL 156 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~----~~~a~~ia~~~gi--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
-.+.+++++.++.++++|+++.++|||+ ..++..+.+.+|+ ..... .
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~---------------------------v 165 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP---------------------------V 165 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee---------------------------E
Confidence 3577889999999999999999999985 5588888888998 33111 1
Q ss_pred EEEecC--hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc
Q 010234 157 LFSRAE--PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI 198 (514)
Q Consensus 157 i~~~~~--p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i 198 (514)
++...+ ..+|...++. ...++++||+.+|+.+.+.||+
T Consensus 166 il~gd~~~K~~K~~~l~~----~~i~I~IGDs~~Di~aA~~AGi 205 (237)
T PRK11009 166 IFAGDKPGQYTKTQWLKK----KNIRIFYGDSDNDITAAREAGA 205 (237)
T ss_pred EEcCCCCCCCCHHHHHHh----cCCeEEEcCCHHHHHHHHHcCC
Confidence 111111 1344444443 2348999999999999999995
No 111
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.95 E-value=1.9e-05 Score=73.80 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=76.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-++.|++.+.++.|+++|+++.++|+.+...+....+..|+......+. .++ ..-..++.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv----~s~----------------~~~~~KP~ 151 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLL----STH----------------TFGYPKED 151 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEE----Eee----------------eCCCCCCC
Confidence 4678999999999999999999999999888888888888855332211 000 00112445
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
|+--..+++.++..++++++|||+.+|+.+-+.||+..
T Consensus 152 p~~~~~~~~~~~~~p~~~l~igDs~~di~aA~~aG~~~ 189 (224)
T PRK14988 152 QRLWQAVAEHTGLKAERTLFIDDSEPILDAAAQFGIRY 189 (224)
T ss_pred HHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHcCCeE
Confidence 66668888899999999999999999999999999863
No 112
>PRK06769 hypothetical protein; Validated
Probab=97.93 E-value=2.8e-05 Score=69.52 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChH--------HHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCce
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKN--------TAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGL 156 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~--------~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
+.|++.+++++|+++|+++.++|+.+.. ......+..|+...... ....++ ..
T Consensus 29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~----------------~~ 89 (173)
T PRK06769 29 LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLC---PHKHGD----------------GC 89 (173)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEEC---cCCCCC----------------CC
Confidence 6799999999999999999999997631 22333444555321000 000000 11
Q ss_pred EEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 157 LFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
-..++.|+--.++++.++...+++++|||+.+|+.+-+.||+-
T Consensus 90 ~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~ 132 (173)
T PRK06769 90 ECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNAT 132 (173)
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence 2245667777889999998899999999999999999999964
No 113
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.93 E-value=2e-05 Score=71.22 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-++.|++.++++.|+++|+++.++|+. ..+..+.+.+|+......+. ...+ .-..++.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~----~~~~----------------~~~~kp~ 144 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIV----DADE----------------VKEGKPH 144 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEee----ehhh----------------CCCCCCC
Confidence 468999999999999999999999998 66788888888864332211 1000 0112344
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
|+--..+++.++..++++++|||+.+|+.+-+.||+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~v~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 145 PETFLLAAELLGVSPNECVVFEDALAGVQAARAAGMFA 182 (185)
T ss_pred hHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCeE
Confidence 55557778888888899999999999999999999753
No 114
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.91 E-value=3.2e-05 Score=72.20 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCC----ChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEE
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGD----NKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFS 159 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~----~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (514)
.+.+++.+.++.++++|+++.++|+| ...++..+.+.+|+...... .+.++. ..
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~----i~~~d~----------------~~-- 171 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPV----IFAGDK----------------PG-- 171 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeE----EECCCC----------------CC--
Confidence 35556999999999999999999999 66789999999999642211 111110 00
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc---ceeeCCC
Q 010234 160 RAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI---GIAMGIA 205 (514)
Q Consensus 160 ~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i---gvamg~~ 205 (514)
...| ++...++. ...++++||+.||+.+-+.||+ ++..|.+
T Consensus 172 ~~Kp-~~~~~l~~----~~i~i~vGDs~~DI~aAk~AGi~~I~V~~g~~ 215 (237)
T TIGR01672 172 QYQY-TKTQWIQD----KNIRIHYGDSDNDITAAKEAGARGIRILRASN 215 (237)
T ss_pred CCCC-CHHHHHHh----CCCeEEEeCCHHHHHHHHHCCCCEEEEEecCC
Confidence 0112 23333322 2347999999999999999994 5555533
No 115
>PLN02940 riboflavin kinase
Probab=97.90 E-value=2.5e-05 Score=78.89 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=75.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH-HcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR-EIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~-~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
++.|++.+.++.|+++|+++.++|+.....+....+ ..|+......+ +.++ .+-..++.
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~i----i~~d----------------~v~~~KP~ 152 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVI----VGGD----------------EVEKGKPS 152 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEE----Eehh----------------hcCCCCCC
Confidence 578999999999999999999999999888887765 57775432221 1111 11123556
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
|+--.++++.++..++++++|||+.+|+.+-+.||+.
T Consensus 153 p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~aGi~ 189 (382)
T PLN02940 153 PDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGME 189 (382)
T ss_pred HHHHHHHHHHcCCChhHEEEEeCCHHHHHHHHHcCCE
Confidence 7777888999999999999999999999999999965
No 116
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.89 E-value=5.8e-05 Score=66.95 Aligned_cols=114 Identities=8% Similarity=0.045 Sum_probs=75.0
Q ss_pred CcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCC-ChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHH
Q 010234 72 GLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGD-NKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHL 150 (514)
Q Consensus 72 ~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~-~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (514)
+.+.....+-+-++.|++.++++.|+++|+++.++|+. ....+..+.+.+|+..........
T Consensus 33 ~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~----------------- 95 (174)
T TIGR01685 33 NSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMH----------------- 95 (174)
T ss_pred CCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHH-----------------
Confidence 34455555566678999999999999999999999987 888889999999985211100000
Q ss_pred hhcCceEEEecC--hhhHHHHHHHHh------hCCCEEEEEcCCcCCHHhhhhcCcceee
Q 010234 151 RQSGGLLFSRAE--PRHKQEIVRLLK------EDGEVVAMTGDGVNDAPALKLADIGIAM 202 (514)
Q Consensus 151 ~~~~~~i~~~~~--p~~k~~iv~~l~------~~~~~v~~iGDg~ND~~ml~~A~igvam 202 (514)
...+..+..... +..-..+.+.++ ..++++++|||+..|+.+-++||+-++.
T Consensus 96 ~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~ 155 (174)
T TIGR01685 96 SLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCY 155 (174)
T ss_pred HhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEE
Confidence 000011111111 111123344443 5678999999999999999999975543
No 117
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.88 E-value=2.5e-05 Score=70.69 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++|+.|+++|+++.++|+... +....+.+|+......+ +.+.+ .-..++.|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~----~~~~~----------------~~~~kp~p 144 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAI----VDPAE----------------IKKGKPDP 144 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEE----Eehhh----------------cCCCCCCh
Confidence 6789999999999999999999998643 45667778875432221 11111 11235566
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
+--..+++.++...+++++|||+.+|+.+-+.+|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 145 EIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred HHHHHHHHHcCCCHHHeEEEecCHHHHHHHHHcCCE
Confidence 667888888888889999999999999999999974
No 118
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.87 E-value=5.2e-05 Score=78.92 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=82.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+.|+.|+++|+++.++|+.....+..+.+.+|+......+ +++++ +-....|
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i----~~~d~-----------------v~~~~kP 388 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTET----FSIEQ-----------------INSLNKS 388 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhccee----EecCC-----------------CCCCCCc
Confidence 67899999999999999999999999999999999999986533221 11110 0012334
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc-eee--CCCCcHHHHhcccccccCCCchhHHHHHHH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG-IAM--GIAGTEVAKEASDMVLADDDFSTIVSAVGE 232 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig-vam--g~~~~~~~k~~ad~v~~~~~~~~i~~~i~~ 232 (514)
+.-...++.+ ..+++++|||+.+|+.+-+.||+. |++ |....+. ...+|+++. +...+.+.+.+
T Consensus 389 ~~~~~al~~l--~~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~-~~~~d~~i~--~l~el~~~l~~ 455 (459)
T PRK06698 389 DLVKSILNKY--DIKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDE-LAQADIVID--DLLELKGILST 455 (459)
T ss_pred HHHHHHHHhc--CcceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccc-cCCCCEEeC--CHHHHHHHHHH
Confidence 4444444444 357899999999999999999963 333 3111222 235777764 44555555533
No 119
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.87 E-value=4.7e-05 Score=68.30 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChH---------------HHHHHHHHcCCcccCccceecccChHHHhhhhHHHHH
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKN---------------TAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAH 149 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~---------------~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (514)
+.|++.++|++|+++|++++++|+.+.. ....+....++.- ..+........+..
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~i~~~~~~~~~~~-------- 96 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDL--DGIYYCPHHPEGVE-------- 96 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCc--cEEEECCCCCcccc--------
Confidence 5799999999999999999999987741 1112233333321 00000000000000
Q ss_pred HhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 150 LRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 150 ~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
...+..-..++.|+--..+++.++...+++++|||+.+|+.+-+.||+..
T Consensus 97 -~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 97 -EFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred -cccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcE
Confidence 00001112355667778888889989999999999999999999999753
No 120
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.86 E-value=6.6e-05 Score=71.19 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=44.7
Q ss_pred ecChhhHHHHHH----HHhhCCCEEEEEcCCcCCHHhhhhc--------CcceeeCCCCcHHHHhcccccccCCCchhHH
Q 010234 160 RAEPRHKQEIVR----LLKEDGEVVAMTGDGVNDAPALKLA--------DIGIAMGIAGTEVAKEASDMVLADDDFSTIV 227 (514)
Q Consensus 160 ~~~p~~k~~iv~----~l~~~~~~v~~iGDg~ND~~ml~~A--------~igvamg~~~~~~~k~~ad~v~~~~~~~~i~ 227 (514)
+..+.+|...++ .++.....++++||+.||.+|++.+ +++|+|+ .+ ..+..|++++. +.+.+.
T Consensus 162 ~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~-~g--~~~~~A~~~~~--~~~~v~ 236 (244)
T TIGR00685 162 KPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG-SG--SKKTVAKFHLT--GPQQVL 236 (244)
T ss_pred eeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe-cC--CcCCCceEeCC--CHHHHH
Confidence 344455644444 4444567899999999999999999 5888885 22 23566888886 444455
Q ss_pred HHH
Q 010234 228 SAV 230 (514)
Q Consensus 228 ~~i 230 (514)
+.+
T Consensus 237 ~~L 239 (244)
T TIGR00685 237 EFL 239 (244)
T ss_pred HHH
Confidence 555
No 121
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.85 E-value=2.6e-05 Score=69.47 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=77.7
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
..++.|++.+.+++|+++|++++++|+.+........+.+|+......+.. .++ .-..++
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~----~~~----------------~~~~Kp 134 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIIS----SDD----------------VGSRKP 134 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEE----GGG----------------SSSSTT
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccc----cch----------------hhhhhh
Confidence 346889999999999999999999999999999999999998743322211 110 001234
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
.|+--..+++.++..++++++|||+..|+.+-+.||+..
T Consensus 135 ~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 135 DPDAYRRALEKLGIPPEEILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp SHHHHHHHHHHHTSSGGGEEEEESSHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHcCCeE
Confidence 456668888999999999999999999999999999753
No 122
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.84 E-value=5.7e-05 Score=68.07 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=72.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+.++.|+++|++++++|+..... ..+..++|+......+.. +. ..-..+++|
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~----~~----------------~~~~~KP~~ 143 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIF----SG----------------DVGRGKPDP 143 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEE----cC----------------CCCCCCCCH
Confidence 678999999999999999999999998887 666666888543322110 00 111234556
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
+--..+++.++..++++++|||+..|+.+-+.+|+-
T Consensus 144 ~~~~~~~~~~~~~~~~~~~vgD~~~di~aA~~~G~~ 179 (183)
T TIGR01509 144 DIYLLALKKLGLKPEECLFVDDSPAGIEAAKAAGMH 179 (183)
T ss_pred HHHHHHHHHcCCCcceEEEEcCCHHHHHHHHHcCCE
Confidence 667888888888999999999999999999999974
No 123
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.81 E-value=3.2e-05 Score=68.04 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCC---------------hHHHHHHHHHcCCcccCccceec-ccChHHHhhhhHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDN---------------KNTAEAICREIGVFECNEDISLK-SLTGKEFMEMHDKK 147 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~---------------~~~a~~ia~~~gi~~~~~~~~~~-~~~~~~~~~~~~~~ 147 (514)
++-|++.++|++|+++|++++++|... ...+..+.+.+|+. ...+... ....+
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~--------- 97 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDD--------- 97 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCC---------
Confidence 467999999999999999999999863 44566677777774 1111000 00000
Q ss_pred HHHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 148 AHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 148 ~~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
..-..++.|+--..+++.++...+++++|||+.+|+.+.+.+|+...
T Consensus 98 -------~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i 144 (161)
T TIGR01261 98 -------NCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGI 144 (161)
T ss_pred -------CCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEE
Confidence 11122445566677788888888999999999999999999997644
No 124
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.79 E-value=4.8e-05 Score=66.03 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCCh---------------HHHHHHHHHcCCcccCccceecccChHHHhhhhHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNK---------------NTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKA 148 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~---------------~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (514)
++.|++.++++.|+++|++++++|+.+. ..+....+.+|+.... . +.......
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~-~~~~~~~~---------- 94 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDG-V-LFCPHHPA---------- 94 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeE-E-EECCCCCC----------
Confidence 4689999999999999999999999763 4555666777774210 0 00000000
Q ss_pred HHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 149 HLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 149 ~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
+..-..++.|+--..+++.++...+++++|||+..|+.+-+.+|+-..
T Consensus 95 -----~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v 142 (147)
T TIGR01656 95 -----DNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAV 142 (147)
T ss_pred -----CCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEE
Confidence 000112455666688888888888999999999999999999997543
No 125
>PLN02423 phosphomannomutase
Probab=97.79 E-value=0.00026 Score=67.01 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhhCCCEEEEEcC----CcCCHHhhhh-cCcceeeCCCCcH
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGD----GVNDAPALKL-ADIGIAMGIAGTE 208 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGD----g~ND~~ml~~-A~igvamg~~~~~ 208 (514)
.+|...++.++ ..++|++||| +.||++||+. .-.++++. +..+
T Consensus 188 vnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~-~~~~ 235 (245)
T PLN02423 188 WDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVT-SPDD 235 (245)
T ss_pred CCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeC-CHHH
Confidence 57888899998 8999999999 8999999997 44688885 4433
No 126
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.77 E-value=6.1e-05 Score=67.10 Aligned_cols=87 Identities=16% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCC-hHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDN-KNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~-~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.+.|++.++++.|++.|++++++|+.+ ...+..+.+.+|+.... -..++.
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~-----------------------------~~~KP~ 93 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP-----------------------------HAVKPP 93 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc-----------------------------CCCCCC
Confidence 568999999999999999999999998 57777777777763210 012455
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhcCcc
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLADIG 199 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A~ig 199 (514)
|+--..+++.++..++++++|||+. .|+.+-+.+|+-
T Consensus 94 p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~ 131 (170)
T TIGR01668 94 GCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSY 131 (170)
T ss_pred hHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCe
Confidence 6666778888888889999999998 799999999963
No 127
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.75 E-value=6.9e-05 Score=68.93 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=70.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++++.|+++|++++++|+.... .....+.+|+......+.. .. ..-..+++|
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~----s~----------------~~~~~KP~~ 163 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVT----SY----------------EVGAEKPDP 163 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEe----ec----------------ccCCCCCCH
Confidence 57899999999999999999999987654 4667777887543222110 00 011124556
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhcCcc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLADIG 199 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A~ig 199 (514)
+--..+++.++..++++++|||+. +|+.+-+.||+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~ 200 (203)
T TIGR02252 164 KIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWR 200 (203)
T ss_pred HHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCe
Confidence 666788888998999999999997 899999999864
No 128
>PLN02811 hydrolase
Probab=97.74 E-value=0.0001 Score=68.70 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHH-HHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEA-ICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~-ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
.++.|++.++|+.|+++|+++.++||........ ..+..++......+ +++++. ..-..++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i----~~~~~~--------------~~~~~KP 138 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHV----VTGDDP--------------EVKQGKP 138 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEE----EECChh--------------hccCCCC
Confidence 4578999999999999999999999987654432 22222332211111 111100 0112245
Q ss_pred ChhhHHHHHHHHh---hCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 162 EPRHKQEIVRLLK---EDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 162 ~p~~k~~iv~~l~---~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
.|+--...++.++ ...+++++|||+..|+.+-+.||+.
T Consensus 139 ~p~~~~~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 139 APDIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred CcHHHHHHHHHhCCCCCCccceEEEeccHhhHHHHHHCCCe
Confidence 6667788888886 7789999999999999999999964
No 129
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.72 E-value=0.00011 Score=67.97 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=75.3
Q ss_pred ccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHc---CCcccCccceecccChHHHhhhhHHHHHHhhcCceE
Q 010234 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREI---GVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLL 157 (514)
Q Consensus 81 ~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 157 (514)
.+.++.|++.+++++|+++|+++.++|..+......+.+.. ++........ +..+
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~f----------------------d~~~ 149 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYF----------------------DTTV 149 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEE----------------------EeCc
Confidence 34568999999999999999999999999888777776654 2322111100 0112
Q ss_pred EEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 158 FSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
..+..|+--..+++.++..+++++++||+..|+.+-+.||+-..
T Consensus 150 g~KP~p~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti 193 (220)
T TIGR01691 150 GLKTEAQSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTG 193 (220)
T ss_pred ccCCCHHHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEE
Confidence 34567777789999999999999999999999999999997543
No 130
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.70 E-value=0.00026 Score=62.02 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=64.7
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHH---HHHHHc---CCcccCccceecccChHHHhhhhHHHHHHhhcCc
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAE---AICREI---GVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGG 155 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~---~ia~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
++.+.|++.+++++++++|++++++|||+...+. .+.+++ |..-+...+ ..-.+...... . .
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~l--i~~~g~~~~~~---------~-~ 92 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPV--LLSPDRLFAAL---------H-R 92 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceE--EEcCCcchhhh---------h-c
Confidence 4678999999999999999999999999988874 555552 211111111 11111111000 0 0
Q ss_pred eEEEecChhhHHHHHHHHhh-----CCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 156 LLFSRAEPRHKQEIVRLLKE-----DGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~-----~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
.+..+...+.|.+.++.+.. ...-++++||+.+|+.+.+++|+.
T Consensus 93 e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 93 EVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 11112222336666665554 335567799999999999998865
No 131
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.70 E-value=0.00037 Score=62.11 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
+.+...+.+|+++|++|+.+|.........+-+.+|+.
T Consensus 26 ~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 26 QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999999999875
No 132
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00031 Score=60.74 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=75.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
+++|+-++.++.+++++++++++|+........+.+.++=...-.++ ..++..... +.......++...++
T Consensus 73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~i--di~sn~~~i-------h~dg~h~i~~~~ds~ 143 (220)
T COG4359 73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCI--DIVSNNDYI-------HIDGQHSIKYTDDSQ 143 (220)
T ss_pred ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeee--EEeecCceE-------cCCCceeeecCCccc
Confidence 68999999999999999999999999999999999887611100000 000000000 000000122222222
Q ss_pred --hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 164 --RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 164 --~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
.+|...++.+.++.+.+.++|||..|+++-+.+++-.|
T Consensus 144 fG~dK~~vI~~l~e~~e~~fy~GDsvsDlsaaklsDllFA 183 (220)
T COG4359 144 FGHDKSSVIHELSEPNESIFYCGDSVSDLSAAKLSDLLFA 183 (220)
T ss_pred cCCCcchhHHHhhcCCceEEEecCCcccccHhhhhhhHhh
Confidence 57889999999999999999999999999999988775
No 133
>PRK10444 UMP phosphatase; Provisional
Probab=97.65 E-value=0.00037 Score=66.03 Aligned_cols=47 Identities=13% Similarity=0.237 Sum_probs=40.3
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH---cCC
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE---IGV 123 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~---~gi 123 (514)
|++.-.+++-|++.++|++|+++|++++++||++..+...++++ +|+
T Consensus 10 GtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 10 GVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 66666678899999999999999999999999998887777766 466
No 134
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.63 E-value=0.00018 Score=81.86 Aligned_cols=135 Identities=11% Similarity=0.166 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc-ccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF-ECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.+.|++.+.++.|+++|+++.++|+.....+....+.+|+. .....+ +..+ ..-..++.
T Consensus 161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~i----v~~~----------------~~~~~KP~ 220 (1057)
T PLN02919 161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAI----VSAD----------------AFENLKPA 220 (1057)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEE----EECc----------------ccccCCCC
Confidence 36799999999999999999999999999999999999985 222211 1111 11123456
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc---ceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHH
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI---GIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYN 238 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i---gvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~ 238 (514)
|+--.++++.++..++++++|||+.+|+.+-+.||+ +|.-+....+.....+|+++.+...-.+.+++..|-....
T Consensus 221 Pe~~~~a~~~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~~~~~~~~~~~~ 299 (1057)
T PLN02919 221 PDIFLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLSDILTGGSDATP 299 (1057)
T ss_pred HHHHHHHHHHcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHHHHHhcCCCCCC
Confidence 677788899999999999999999999999999995 4433322233444567888877766666666655544443
No 135
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.63 E-value=0.00015 Score=63.37 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=69.2
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
+....+++.+.++.|+++|+++.++|+.....+....+.. +......+. ..+ . ...++
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~----~~~----------------~-~~~Kp 119 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLIL----GSD----------------E-FGAKP 119 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEE----ecC----------------C-CCCCc
Confidence 3345689999999999999999999999999988887775 432211110 000 1 11345
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcC
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLAD 197 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ 197 (514)
.|+--..+++.++..+ ++++|||+.+|+.+-+.||
T Consensus 120 ~~~~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 120 EPEIFLAALESLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CHHHHHHHHHHcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 6666788888888888 9999999999999988875
No 136
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.61 E-value=0.0006 Score=64.82 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=40.7
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEECC---CChHHHHHHHHHcCCcc
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITG---DNKNTAEAICREIGVFE 125 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG---~~~~~a~~ia~~~gi~~ 125 (514)
|++.-.+++-|++.++|++|+++|++++++|| |+........+++|+..
T Consensus 10 Gtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~ 61 (249)
T TIGR01457 10 GTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA 61 (249)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 44555566677999999999999999999996 88888888888898843
No 137
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.59 E-value=0.00019 Score=67.07 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+++++|+++ ++++++|+.....+....+.+|+......+... . ..-..+++|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~----~----------------~~~~~KP~~ 155 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVS----E----------------DAGIQKPDK 155 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEc----C----------------ccCCCCCCH
Confidence 5789999999999999 999999999999999999999986533222110 0 011124556
Q ss_pred hhHHHHHHHH-hhCCCEEEEEcCCc-CCHHhhhhcCcc
Q 010234 164 RHKQEIVRLL-KEDGEVVAMTGDGV-NDAPALKLADIG 199 (514)
Q Consensus 164 ~~k~~iv~~l-~~~~~~v~~iGDg~-ND~~ml~~A~ig 199 (514)
+--..+++.+ +..++++++|||+. +|+.+-+.+|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~ 193 (224)
T TIGR02254 156 EIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLD 193 (224)
T ss_pred HHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCc
Confidence 6667888888 88889999999998 899999999964
No 138
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.56 E-value=0.00044 Score=76.51 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCChhHHHHHHHH-HHcCCcEEEECCCChHHHHHHHHH
Q 010234 83 DPPRNEVHQAIEDC-RAAGIRVMVITGDNKNTAEAICRE 120 (514)
Q Consensus 83 ~~l~~~~~~~I~~l-~~~Gi~v~i~TG~~~~~a~~ia~~ 120 (514)
..+.+++.+++++| ++.|+.|+++|||...........
T Consensus 615 ~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 615 KSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 36778999999997 778999999999999999988754
No 139
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.55 E-value=0.00018 Score=60.71 Aligned_cols=88 Identities=9% Similarity=0.108 Sum_probs=64.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCC-ChHHHHHHHHHcC-------CcccCccceecccChHHHhhhhHHHHHHhhcCc
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGD-NKNTAEAICREIG-------VFECNEDISLKSLTGKEFMEMHDKKAHLRQSGG 155 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~-~~~~a~~ia~~~g-------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
++.+++.+.++.|+++|+++.++|+. ....+..+.+..+ +......+ .. ..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~----~~----------------~~- 87 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPL----TI----------------GY- 87 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhh----hh----------------cC-
Confidence 68899999999999999999999999 7777777777766 21111000 00 00
Q ss_pred eEEEecChhhHHHHHHHHh--hCCCEEEEEcCCcCCHHhhhh
Q 010234 156 LLFSRAEPRHKQEIVRLLK--EDGEVVAMTGDGVNDAPALKL 195 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~--~~~~~v~~iGDg~ND~~ml~~ 195 (514)
....|+.-..+++.++ ..++++++|||+..|+..++.
T Consensus 88 ---~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 88 ---WLPKSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred ---CCcHHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHHh
Confidence 0134556678888899 889999999999999876653
No 140
>PRK09449 dUMP phosphatase; Provisional
Probab=97.53 E-value=0.00031 Score=65.66 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=72.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++++.|+ +|+++.++|+.....+....+.+|+......+.. .. ..-..+++|
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~----~~----------------~~~~~KP~p 153 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVI----SE----------------QVGVAKPDV 153 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEE----EC----------------ccCCCCCCH
Confidence 57899999999999 6899999999998888888888888643322110 00 011124556
Q ss_pred hhHHHHHHHHhhC-CCEEEEEcCCc-CCHHhhhhcCcce
Q 010234 164 RHKQEIVRLLKED-GEVVAMTGDGV-NDAPALKLADIGI 200 (514)
Q Consensus 164 ~~k~~iv~~l~~~-~~~v~~iGDg~-ND~~ml~~A~igv 200 (514)
+--..+++.++.. .+++++|||+. +|+.+-+.||+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~ 192 (224)
T PRK09449 154 AIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDT 192 (224)
T ss_pred HHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcE
Confidence 6667888888864 47899999998 7999999999753
No 141
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.51 E-value=0.00022 Score=63.12 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChH------------HHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKN------------TAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQ 152 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~------------~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
+-|++.++|++|+++|+++.++|..+.. .+..+.+.+|+.. ..+ ...+.
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~i---i~~~~-------------- 103 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVL---AATHA-------------- 103 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEE---EecCC--------------
Confidence 3599999999999999999999986642 4566778888742 110 00000
Q ss_pred cCceEEEecChhhHHHHHHHHh--hCCCEEEEEcCCc--------CCHHhhhhcCcce
Q 010234 153 SGGLLFSRAEPRHKQEIVRLLK--EDGEVVAMTGDGV--------NDAPALKLADIGI 200 (514)
Q Consensus 153 ~~~~i~~~~~p~~k~~iv~~l~--~~~~~v~~iGDg~--------ND~~ml~~A~igv 200 (514)
.....+.|+--..+++.++ ...+++++|||.. +|+.+-+.||+-.
T Consensus 104 ---~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~ 158 (166)
T TIGR01664 104 ---GLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEF 158 (166)
T ss_pred ---CCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCc
Confidence 0112344556677888887 7789999999986 6999999998765
No 142
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.50 E-value=0.00074 Score=64.50 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=37.5
Q ss_pred EEecccCC----CChhHHHHHHHHHHcCCcEEEECCCChHH---HHHHHHHcCCc
Q 010234 77 GLVGLRDP----PRNEVHQAIEDCRAAGIRVMVITGDNKNT---AEAICREIGVF 124 (514)
Q Consensus 77 G~~~~~~~----l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~---a~~ia~~~gi~ 124 (514)
|++.-.++ +-|++.++|++|+++|++++++||++..+ .....+++|+.
T Consensus 10 Gtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 10 GVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred CeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 55555555 88999999999999999999999987665 45555667763
No 143
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.44 E-value=0.00014 Score=63.09 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=68.9
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
+++|++.+.++.|+ +++++.++|+.+...+..+.+.+++.... ....+.+++. .+..|
T Consensus 45 ~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~---f~~i~~~~d~------------------~~~KP 102 (148)
T smart00577 45 KKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYF---GYRRLFRDEC------------------VFVKG 102 (148)
T ss_pred EECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCE---eeeEEECccc------------------cccCC
Confidence 57999999999998 67999999999999999999998874311 0011111110 01112
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
. -.+.++.++..++++++|||+.+|+.+-+.+++-|.
T Consensus 103 ~-~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 103 K-YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred e-EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEec
Confidence 2 344567778889999999999999999888877663
No 144
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.43 E-value=0.00049 Score=58.91 Aligned_cols=86 Identities=19% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
...|+.++-+++++++|++++++|..+...+...++.+|+..-. --.++.+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~-----------------------------~A~KP~~ 96 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIY-----------------------------RAKKPFG 96 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceee-----------------------------cccCccH
Confidence 36899999999999999999999999999999999999985311 0112334
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhcCc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLADI 198 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A~i 198 (514)
..-.+.++.++...++|+||||.. .|+-.-+.+|+
T Consensus 97 ~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~ 132 (175)
T COG2179 97 RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM 132 (175)
T ss_pred HHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCc
Confidence 455788999999999999999986 79988888874
No 145
>PLN02580 trehalose-phosphatase
Probab=97.40 E-value=0.0013 Score=65.40 Aligned_cols=37 Identities=8% Similarity=0.208 Sum_probs=31.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcC
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG 122 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~g 122 (514)
+.++..+++++|.+. .+++|+|||+......+....+
T Consensus 142 ~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~~ 178 (384)
T PLN02580 142 MSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLTE 178 (384)
T ss_pred CCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCCC
Confidence 678999999999988 5899999999999888765433
No 146
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.35 E-value=0.00055 Score=62.73 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH-cCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE-IGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
++.|++.++++.|+++|+++.++|+.+.......... .++......+ +... ..-..+++
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v----~~s~----------------~~~~~KP~ 143 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHI----YLSQ----------------DLGMRKPE 143 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEE----EEec----------------ccCCCCCC
Confidence 4789999999999999999999999886655443322 2332211110 0000 01112455
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
|+--..+++.++..++++++|||+..|+.+-+.+|+..
T Consensus 144 p~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~ 181 (199)
T PRK09456 144 ARIYQHVLQAEGFSAADAVFFDDNADNIEAANALGITS 181 (199)
T ss_pred HHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEE
Confidence 66668889999999999999999999999999999754
No 147
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.32 E-value=0.00028 Score=65.24 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=67.4
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHH--HHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNT--AEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~--a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
-++.|++.++++.|+++|+++.++|+..... ........++......+. .. ...-..+
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~----~s----------------~~~~~~K 152 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVV----ES----------------CLEGLRK 152 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEE----Ee----------------eecCCCC
Confidence 3578999999999999999999999875432 222222334322211110 00 0011134
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
+.|+--..+++.++..++++++|||...|+.+-+.||+-.
T Consensus 153 P~p~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 153 PDPRIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred CCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEE
Confidence 5666668888899988999999999999999999999743
No 148
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.22 E-value=0.0016 Score=61.82 Aligned_cols=86 Identities=14% Similarity=0.272 Sum_probs=59.2
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHH---HHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEE
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNT---AEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLF 158 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~---a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (514)
..++-|++.+.++.|+++|++++++|+|.... +....+..|+..... ..++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~--------------------------d~ll 169 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADE--------------------------EHLL 169 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCc--------------------------ceEE
Confidence 44577999999999999999999999998443 445566778753211 1233
Q ss_pred EecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhh
Q 010234 159 SRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPAL 193 (514)
Q Consensus 159 ~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml 193 (514)
.+.....|..-.+.+.+....+++|||..+|+...
T Consensus 170 lr~~~~~K~~rr~~I~~~y~Ivl~vGD~~~Df~~~ 204 (266)
T TIGR01533 170 LKKDKSSKESRRQKVQKDYEIVLLFGDNLLDFDDF 204 (266)
T ss_pred eCCCCCCcHHHHHHHHhcCCEEEEECCCHHHhhhh
Confidence 33333344444555555566799999999999643
No 149
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.22 E-value=0.00089 Score=66.18 Aligned_cols=94 Identities=10% Similarity=0.107 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH----cCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE----IGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
+.+++.++|++|+++|+++.++|..+...+..+.+. +++...... ......
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~-------------------------~~~~~~ 86 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDA-------------------------RSINWG 86 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeE-------------------------EEEecC
Confidence 479999999999999999999999999999999888 666432211 011224
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
+.|+.-.++++.++...+.+++|||+..|+.+.+.+...|.+-
T Consensus 87 pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~~~~~ 129 (320)
T TIGR01686 87 PKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKITLPVKTLL 129 (320)
T ss_pred chHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCCCccC
Confidence 5667778899999999999999999999999999988776554
No 150
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.21 E-value=0.00065 Score=67.22 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=67.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCC---------------ChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGD---------------NKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKA 148 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~---------------~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (514)
++.|++.++++.|+++|++++++|+. ....+..+.+..|+.. ..+......+.
T Consensus 30 ~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~f--d~i~i~~~~~s---------- 97 (354)
T PRK05446 30 AFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKF--DEVLICPHFPE---------- 97 (354)
T ss_pred eECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCce--eeEEEeCCcCc----------
Confidence 57899999999999999999999994 2334555666666631 11100000000
Q ss_pred HHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 149 HLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 149 ~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
+..-+.++.|.--..+++.++..++++++|||+.+|+.+-+.||+...
T Consensus 98 -----d~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I 145 (354)
T PRK05446 98 -----DNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGI 145 (354)
T ss_pred -----ccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence 000112334445566667777788999999999999999999997643
No 151
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.20 E-value=0.00091 Score=60.39 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=72.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.+++.+++++|+ .+++++|+.+...+....+.+|+......+.. .++.. ......++.|
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~----~~~~~------------~~~~~~KP~p 144 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFC----FDTAN------------PDYLLPKPSP 144 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEE----eeccc------------CccCCCCCCH
Confidence 47899999999997 47999999999999999999998653322111 00000 0000125566
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
+--..+++.++..++++++|||+..|+.+-+.+|+..
T Consensus 145 ~~~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 145 QAYEKALREAGVDPERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred HHHHHHHHHhCCCccceEEEeCCHHHHHHHHHcCCEE
Confidence 6678889999999999999999999999999999754
No 152
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.15 E-value=0.0012 Score=59.05 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=85.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccc-----eecccChHHHhhhhH--------HHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDI-----SLKSLTGKEFMEMHD--------KKAHL 150 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~-----~~~~~~~~~~~~~~~--------~~~~~ 150 (514)
++.|++.++++.|++.=-.+++ |-.-...+.++|..+|+...+... .......++-.++.. ....+
T Consensus 83 ~lvPgA~etm~~l~~~~tp~v~-STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~geel 161 (315)
T COG4030 83 KLVPGAEETMATLQERWTPVVI-STSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGEEL 161 (315)
T ss_pred ccCCChHHHHHHHhccCCceEE-eccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHHHH
Confidence 5789999999999877445554 444566788889988884322111 111111111000000 00000
Q ss_pred hhcCceEEEecChhh---------------HHHHHHHHhh---CCCEEEEEcCCcCCHHhhhhcC-c-ceeeCCCCcHHH
Q 010234 151 RQSGGLLFSRAEPRH---------------KQEIVRLLKE---DGEVVAMTGDGVNDAPALKLAD-I-GIAMGIAGTEVA 210 (514)
Q Consensus 151 ~~~~~~i~~~~~p~~---------------k~~iv~~l~~---~~~~v~~iGDg~ND~~ml~~A~-i-gvamg~~~~~~~ 210 (514)
...-..+|.|..|.. |.++++.+-+ .....+++||+..|..||+.+. - |+|+.-|+.+-+
T Consensus 162 fe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~sa~~VGDSItDv~ml~~~rgrGglAvaFNGNeYa 241 (315)
T COG4030 162 FEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFSAVVVGDSITDVKMLEAARGRGGLAVAFNGNEYA 241 (315)
T ss_pred HHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcceeEecCcccchHHHHHhhccCceEEEecCCccc
Confidence 001112344444433 3444444332 2344789999999999999885 3 366666888877
Q ss_pred HhcccccccCCCchhHHHHHH
Q 010234 211 KEASDMVLADDDFSTIVSAVG 231 (514)
Q Consensus 211 k~~ad~v~~~~~~~~i~~~i~ 231 (514)
...||..+.+.+....+.+|+
T Consensus 242 l~eAdVAvisp~~~a~~pvie 262 (315)
T COG4030 242 LKEADVAVISPTAMAEAPVIE 262 (315)
T ss_pred ccccceEEeccchhhhhHHHH
Confidence 888998888888777666664
No 153
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.10 E-value=0.0019 Score=61.13 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=63.2
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHH--HHHHHcCCcc-cCccceecccChHHHhhhhHHHHHHhhc
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAE--AICREIGVFE-CNEDISLKSLTGKEFMEMHDKKAHLRQS 153 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~--~ia~~~gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
|.+.-..++.|++.++|++|+++|+++.++|+.+..... ...+++|+.. ....+ ++..+.
T Consensus 17 G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~I----i~s~~~------------- 79 (242)
T TIGR01459 17 GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMI----ISSGEI------------- 79 (242)
T ss_pred cccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceE----EccHHH-------------
Confidence 555556778999999999999999999999997665544 5678888854 22211 111110
Q ss_pred CceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc
Q 010234 154 GGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI 198 (514)
Q Consensus 154 ~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i 198 (514)
....-.+..+.++..++.++++||+.+|...+..++.
T Consensus 80 --------~~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 80 --------AVQMILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred --------HHHHHHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 0011111223334456789999999999988865543
No 154
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.07 E-value=0.0011 Score=61.67 Aligned_cols=120 Identities=22% Similarity=0.257 Sum_probs=73.0
Q ss_pred CCChhHHHHHHHH--HHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 84 PPRNEVHQAIEDC--RAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 84 ~l~~~~~~~I~~l--~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
++.|+..++++.+ ++.|+.++|+|.-+......+.+.-|+......++.....-++--.+ ........-+.++
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l-----~v~pyh~h~C~~C 145 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRL-----RVRPYHSHGCSLC 145 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceE-----EEeCccCCCCCcC
Confidence 6789999999999 45899999999999999999999999865433332211110000000 0000001112233
Q ss_pred Ch-hhHHHHHHHHhhC-------CCEEEEEcCCcCCH-HhhhhcCcceeeCCCCcH
Q 010234 162 EP-RHKQEIVRLLKED-------GEVVAMTGDGVNDA-PALKLADIGIAMGIAGTE 208 (514)
Q Consensus 162 ~p-~~k~~iv~~l~~~-------~~~v~~iGDg~ND~-~ml~~A~igvamg~~~~~ 208 (514)
++ .=|..+++.+... .++|++||||.||. |+++-..--++|.-.+-+
T Consensus 146 ~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~ 201 (234)
T PF06888_consen 146 PPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYP 201 (234)
T ss_pred CCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCCh
Confidence 33 3477777776654 37999999999994 555433333444433433
No 155
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.06 E-value=0.00097 Score=62.15 Aligned_cols=98 Identities=11% Similarity=0.128 Sum_probs=74.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
-++.|++.++|+.| ++++.++|+.+...+....+..|+....... .+++.+ .-..++.
T Consensus 87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~---v~~~~~----------------~~~~KP~ 144 (221)
T PRK10563 87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPDK---LFSGYD----------------IQRWKPD 144 (221)
T ss_pred CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcce---EeeHHh----------------cCCCCCC
Confidence 45778999999988 5999999999988888888888886533211 111111 0112456
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceee
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAM 202 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvam 202 (514)
|+--..+++.++..++++++|||+.+|+.+-+.||+.+..
T Consensus 145 p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 145 PALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred hHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCEEEE
Confidence 7777888999999899999999999999999999987653
No 156
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.05 E-value=0.0016 Score=58.95 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=71.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
+.|+ .+.++.|++. +++.++||.....+....+.+|+......+ ++.++ .-..++.|+
T Consensus 89 ~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i----~~~~~----------------~~~~KP~p~ 146 (188)
T PRK10725 89 PLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAV----VAADD----------------VQHHKPAPD 146 (188)
T ss_pred CccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEE----Eehhh----------------ccCCCCChH
Confidence 4454 6899999865 899999999999999999999986533221 11111 112355667
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
--...++.++..++++++|||+.+|+.+-+.||+-+
T Consensus 147 ~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~~ 182 (188)
T PRK10725 147 TFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMDA 182 (188)
T ss_pred HHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCEE
Confidence 778888999988899999999999999999999753
No 157
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=96.99 E-value=0.0047 Score=54.75 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=42.8
Q ss_pred cEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH---cCC
Q 010234 73 LTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE---IGV 123 (514)
Q Consensus 73 l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~---~gi 123 (514)
+.+-|++..++..-|++.|++++|++++.+|-.+|.-..++-+.+.++ +|+
T Consensus 12 lDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf 65 (262)
T KOG3040|consen 12 LDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGF 65 (262)
T ss_pred EeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCC
Confidence 456799999999999999999999999999999998877666665544 566
No 158
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.98 E-value=0.0053 Score=59.46 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=35.6
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHH---HHHHHcCCc
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAE---AICREIGVF 124 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~---~ia~~~gi~ 124 (514)
|++.-.++.-|++.++|++|+++|++++++||++..+.. .-.+++|+.
T Consensus 11 Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 11 GVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 444445667788999999999999999999997644333 334557763
No 159
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.96 E-value=0.0055 Score=56.60 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=56.2
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHH---HHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEE
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNT---AEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLF 158 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~---a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (514)
+.+.-|++.++++.++++|++|+++|||+... +..-..+.|+... . .++
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~---------------------------~Li 169 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-K---------------------------HLI 169 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-C---------------------------eee
Confidence 34678999999999999999999999999765 4444455676531 1 122
Q ss_pred Eec-Ch------hhHHHHHHHHhhCCCE-EEEEcCCcCCH
Q 010234 159 SRA-EP------RHKQEIVRLLKEDGEV-VAMTGDGVNDA 190 (514)
Q Consensus 159 ~~~-~p------~~k~~iv~~l~~~~~~-v~~iGDg~ND~ 190 (514)
-|. .. .-|.+.-+.+...+.+ ++.+||..+|+
T Consensus 170 LR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl 209 (229)
T TIGR01675 170 LRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDL 209 (229)
T ss_pred ecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHh
Confidence 222 11 1166666666666655 57799999998
No 160
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.93 E-value=0.0019 Score=60.09 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=81.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+......+ +++.+ +.-.++.
T Consensus 85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~----v~~~d----------------v~~~KP~ 144 (221)
T COG0637 85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVI----VTADD----------------VARGKPA 144 (221)
T ss_pred CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchh----ccHHH----------------HhcCCCC
Confidence 368899999999999999999999999999999999999997654321 22222 1222678
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
|+--....+.|+..++++++|.|+.+.+.+.++||.-+
T Consensus 145 Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~v 182 (221)
T COG0637 145 PDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAGMRV 182 (221)
T ss_pred CHHHHHHHHHcCCChHHeEEEecchhHHHHHHHCCCEE
Confidence 88889999999999999999999999999999999543
No 161
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.86 E-value=0.0022 Score=58.64 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=61.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+++++|++++ +.+++|..+........+.+++...........+.+++ ....|
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~-------------------~~~kp 133 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH-------------------DESKE 133 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc-------------------CcccH
Confidence 47899999999999875 67777776655555555666664321111101111000 01224
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhc--Ccce
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA--DIGI 200 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A--~igv 200 (514)
+--..+++.++ .+++++|||+.+|+.+-++| |+-+
T Consensus 134 ~~~~~a~~~~~--~~~~v~vgDs~~di~aA~~a~~Gi~~ 170 (197)
T PHA02597 134 KLFIKAKEKYG--DRVVCFVDDLAHNLDAAHEALSQLPV 170 (197)
T ss_pred HHHHHHHHHhC--CCcEEEeCCCHHHHHHHHHHHcCCcE
Confidence 44455666676 67899999999999999999 9753
No 162
>PLN03017 trehalose-phosphatase
Probab=96.80 E-value=0.021 Score=56.53 Aligned_cols=35 Identities=6% Similarity=0.134 Sum_probs=31.7
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR 119 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~ 119 (514)
.+.+++.++|++|. +|++++++|||....+..+..
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~ 167 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFVK 167 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhhc
Confidence 58899999999999 789999999999999998843
No 163
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.78 E-value=0.0077 Score=54.00 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=74.6
Q ss_pred CCChhHHHHHHHHHHcCC-cEEEECCCChHHHHHHHHHcCCcccCccceecccChHH-HhhhhHHHHHHhhc-CceEEEe
Q 010234 84 PPRNEVHQAIEDCRAAGI-RVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKE-FMEMHDKKAHLRQS-GGLLFSR 160 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi-~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~~~ 160 (514)
++.|+..++|+.+++.|. .++|+|--+.-....+.+..|+.+....+. +... ++.- ........ ...-+.+
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~If----TNPa~~da~--G~L~v~pyH~~hsC~~ 157 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIF----TNPACVDAS--GRLLVRPYHTQHSCNL 157 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHh----cCCcccCCC--CcEEeecCCCCCccCc
Confidence 678999999999999997 999999999999999999998843211110 0000 0000 00000000 0112222
Q ss_pred cChh-hHHHHHHHHhhC-------CCEEEEEcCCcCC-HHhhhhcCcceeeCCCCcHH
Q 010234 161 AEPR-HKQEIVRLLKED-------GEVVAMTGDGVND-APALKLADIGIAMGIAGTEV 209 (514)
Q Consensus 161 ~~p~-~k~~iv~~l~~~-------~~~v~~iGDg~ND-~~ml~~A~igvamg~~~~~~ 209 (514)
+.+. =|..+++++... .++++++|||.|| +|+++..+.-+||--.+-+.
T Consensus 158 CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl 215 (256)
T KOG3120|consen 158 CPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPL 215 (256)
T ss_pred CchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCch
Confidence 2221 255566655432 3589999999999 78999888888886444443
No 164
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=96.58 E-value=0.005 Score=58.10 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=65.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.+++++|++. +++.++|+.+.. .+..|+......+. ..+ ..-..++.|
T Consensus 113 ~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~----~~~----------------~~~~~KP~p 166 (238)
T PRK10748 113 DVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVL----RAG----------------PHGRSKPFS 166 (238)
T ss_pred CCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeE----ecc----------------cCCcCCCcH
Confidence 5679999999999875 999999997654 24566643222110 000 001123455
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCC-cCCHHhhhhcCcceeeC
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDG-VNDAPALKLADIGIAMG 203 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg-~ND~~ml~~A~igvamg 203 (514)
+--..+++.++..++++++|||+ ..|+.+-+.||+-.+..
T Consensus 167 ~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v 207 (238)
T PRK10748 167 DMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWI 207 (238)
T ss_pred HHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEE
Confidence 56677788888889999999999 59999999999765544
No 165
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.54 E-value=0.014 Score=51.22 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHHcCCc--EEEECCC-------ChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhc
Q 010234 83 DPPRNEVHQAIEDCRAAGIR--VMVITGD-------NKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQS 153 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~--v~i~TG~-------~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
+++.|+..+.+++|++.+.. ++|+|.. ....|..+.+.+|+.
T Consensus 58 ~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp----------------------------- 108 (168)
T PF09419_consen 58 DEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP----------------------------- 108 (168)
T ss_pred CcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc-----------------------------
Confidence 45789999999999999875 9999997 488899999999973
Q ss_pred CceEEEecChhhHHHHHHHHhhC-----CCEEEEEcCCc-CCHHhhhhcC-ccee
Q 010234 154 GGLLFSRAEPRHKQEIVRLLKED-----GEVVAMTGDGV-NDAPALKLAD-IGIA 201 (514)
Q Consensus 154 ~~~i~~~~~p~~k~~iv~~l~~~-----~~~v~~iGDg~-ND~~ml~~A~-igva 201 (514)
...+....|....++.++++.. .+++++|||-. .|+-|-...| .+|-
T Consensus 109 -vl~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~til 162 (168)
T PF09419_consen 109 -VLRHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTIL 162 (168)
T ss_pred -EEEeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEE
Confidence 1123334566677888888765 88999999975 8998888777 4543
No 166
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.46 E-value=0.01 Score=55.37 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=75.2
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
.-+..+++.+++++++++ ++++++|.-.........+++|+.+....+.... ..-..++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~--------------------~~g~~KP 155 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISE--------------------DVGVAKP 155 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEec--------------------ccccCCC
Confidence 347889999999999998 9999999998889999999999765443321110 1123455
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhcCcc
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLADIG 199 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A~ig 199 (514)
.|+-=..+++.++..++++++|||+. ||+..-+.+|.-
T Consensus 156 ~~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~ 194 (229)
T COG1011 156 DPEIFEYALEKLGVPPEEALFVGDSLENDILGARALGMK 194 (229)
T ss_pred CcHHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcE
Confidence 66666889999999999999999976 787888888864
No 167
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.022 Score=54.09 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=38.8
Q ss_pred EEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH
Q 010234 75 FVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE 120 (514)
Q Consensus 75 ~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~ 120 (514)
+=|++.-.++.-|++.++|++|+++|++++++|..+..+...++++
T Consensus 15 lDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~ 60 (269)
T COG0647 15 LDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAAR 60 (269)
T ss_pred CcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 4588888889999999999999999999999999886666644444
No 168
>PLN02645 phosphoglycolate phosphatase
Probab=96.27 E-value=0.0098 Score=58.53 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=62.8
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH---HHcCCcccCccceecccChHHHhhhhHHHHHHhhc
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC---REIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQS 153 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia---~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
|++.-.+.+-|++.++|++|+++|++++++|+++..+...++ +++|+......
T Consensus 37 Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~------------------------ 92 (311)
T PLN02645 37 GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEE------------------------ 92 (311)
T ss_pred CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhh------------------------
Confidence 666666778899999999999999999999999966666665 55776432221
Q ss_pred CceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 154 GGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 154 ~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
++... ......++..+..+...++++++..|...++.+|+-+.-|
T Consensus 93 ---I~ts~--~~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~g 137 (311)
T PLN02645 93 ---IFSSS--FAAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYLGG 137 (311)
T ss_pred ---EeehH--HHHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEecC
Confidence 11111 1122223322222223355556678899999988765433
No 169
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=95.85 E-value=0.046 Score=48.48 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHh-----hcCceEEE
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLR-----QSGGLLFS 159 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~ 159 (514)
+.+++.+++.+|+++|++++++|.-+ |+-. ...+...+...++.-.... .-+...+|
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTNQs-----------Gi~r-------gyf~~~~f~~~~~~m~~~l~~~gv~id~i~~C 93 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTNQS-----------GIGR-------GYFTEADFDKLHNKMLKILASQGVKIDGILYC 93 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEECCC-----------Cccc-------cCccHHHHHHHHHHHHHHHHHcCCccceEEEC
Confidence 67999999999999999999999743 2211 1122222222222111110 01122333
Q ss_pred e-----------cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 160 R-----------AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 160 ~-----------~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
. +.|.--.++++.++.......+|||...|+.+-..+|+.
T Consensus 94 ph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 94 PHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred CCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence 3 333444777788888889999999999999999999875
No 170
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.81 E-value=0.016 Score=46.56 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=35.7
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH---HHcCCcc
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC---REIGVFE 125 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia---~~~gi~~ 125 (514)
|++...+++-|++.++|+.|+++|++++++|..+..+...++ +.+|+.-
T Consensus 7 Gvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 7 GVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred cEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 455566778899999999999999999999998755544444 5567753
No 171
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=95.53 E-value=0.0084 Score=45.18 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=45.0
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEEcCC-cCCHHhhhhcCc---ceeeCCCCcHHHH---hcccccccC
Q 010234 160 RAEPRHKQEIVRLLKEDGEVVAMTGDG-VNDAPALKLADI---GIAMGIAGTEVAK---EASDMVLAD 220 (514)
Q Consensus 160 ~~~p~~k~~iv~~l~~~~~~v~~iGDg-~ND~~ml~~A~i---gvamg~~~~~~~k---~~ad~v~~~ 220 (514)
+++|.--..+.+.++...+++++|||+ ..|+.+-+.+|+ .|.-|....+... ..+|+|+.+
T Consensus 4 KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~ 71 (75)
T PF13242_consen 4 KPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDD 71 (75)
T ss_dssp TTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESS
T ss_pred CCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECC
Confidence 456667788888998889999999999 999999999994 4444433333322 467887754
No 172
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.25 E-value=0.03 Score=58.57 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=61.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCCh------------HHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNK------------NTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQ 152 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~------------~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
+.|++.++|++|+++|++++|+|.... ..+..+.+.+|+.- .. +.+.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipf--dv-----iia~-------------- 256 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPF--QV-----FIAI-------------- 256 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCce--EE-----EEeC--------------
Confidence 469999999999999999999999765 34666677777631 00 0000
Q ss_pred cCceEEEecChhhHHHHHHHHh----hCCCEEEEEcCCcCCHHhhhhc
Q 010234 153 SGGLLFSRAEPRHKQEIVRLLK----EDGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 153 ~~~~i~~~~~p~~k~~iv~~l~----~~~~~v~~iGDg~ND~~ml~~A 196 (514)
....+.++.|.--..+++.++ .+.+++++|||...|+.+-+.|
T Consensus 257 -~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~a 303 (526)
T TIGR01663 257 -GAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAA 303 (526)
T ss_pred -CCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhc
Confidence 011122344555566677664 5678999999999998775544
No 173
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=95.18 E-value=0.11 Score=44.94 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=69.0
Q ss_pred EEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH---HHc-----CCcccCccceecccChHHHhhhhHHH
Q 010234 76 VGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC---REI-----GVFECNEDISLKSLTGKEFMEMHDKK 147 (514)
Q Consensus 76 lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia---~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~ 147 (514)
+.+++- |..++++.+..++++++|++++.+|+|+...+...- ... ++. ...+ .++.+.+..
T Consensus 20 ~~~~G~-d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP--~Gpv---~~sP~~l~~----- 88 (157)
T PF08235_consen 20 LPILGK-DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLP--DGPV---LLSPDSLFS----- 88 (157)
T ss_pred hhccCc-hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCC--CCCE---EECCcchhh-----
Confidence 334444 589999999999999999999999999966555433 333 221 1111 011000000
Q ss_pred HHHhhcCceEEEecChhhHHHHHHHHhhC-----CCEEEEEcCCcCCHHhhhhcCcc
Q 010234 148 AHLRQSGGLLFSRAEPRHKQEIVRLLKED-----GEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 148 ~~~~~~~~~i~~~~~p~~k~~iv~~l~~~-----~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
.....+..+.+.+.|...++.++.. ..-.+++|+..+|+.+.+++|+.
T Consensus 89 ----al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 89 ----ALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred ----hhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 0001133444556788888877654 34568899999999999998865
No 174
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.02 E-value=0.033 Score=49.58 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=63.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
++.|++.++++ ++.++|+.+........+..|+...... +++.++ .-..++.|
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~----v~~~~~----------------~~~~KP~p 142 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDR----AFSVDT----------------VRAYKPDP 142 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhh----hccHhh----------------cCCCCCCH
Confidence 57899999988 3789999999999989999988543221 111111 11235666
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A 196 (514)
+--..+++.++..++++++|||+..|+.+-+++
T Consensus 143 ~~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 143 VVYELVFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHHHHHHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 666888999999999999999999999876653
No 175
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=94.97 E-value=0.049 Score=50.89 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=54.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChH---HHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKN---TAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~---~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
+.-|++.+.++.++++|++|+++|||+.. .+..=.++.|+..... .++..
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~---------------------------l~lr~ 167 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDH---------------------------LILRP 167 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSC---------------------------GEEEE
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccch---------------------------hcccc
Confidence 45688999999999999999999999855 3333345556543111 11111
Q ss_pred cC-------hhhHHHHHHHHhhCCC-EEEEEcCCcCCHHh
Q 010234 161 AE-------PRHKQEIVRLLKEDGE-VVAMTGDGVNDAPA 192 (514)
Q Consensus 161 ~~-------p~~k~~iv~~l~~~~~-~v~~iGDg~ND~~m 192 (514)
.. .+-|..-.+.+.+.|. .++.+||..+|+.-
T Consensus 168 ~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~ 207 (229)
T PF03767_consen 168 DKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSG 207 (229)
T ss_dssp ESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHC
T ss_pred ccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhc
Confidence 11 1236677777777754 56779999999865
No 176
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=94.93 E-value=0.18 Score=47.46 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=32.3
Q ss_pred ceEEEecChhhHHHHHHHHhhCC-------CEEEEEcCCcCCHHhhhhc------CcceeeCCCCcHHHHhcccccccC
Q 010234 155 GLLFSRAEPRHKQEIVRLLKEDG-------EVVAMTGDGVNDAPALKLA------DIGIAMGIAGTEVAKEASDMVLAD 220 (514)
Q Consensus 155 ~~i~~~~~p~~k~~iv~~l~~~~-------~~v~~iGDg~ND~~ml~~A------~igvamg~~~~~~~k~~ad~v~~~ 220 (514)
..+-.+..-..|...++.+-... ..++++||...|-.||+.. ++++.++..........|+|-+.+
T Consensus 155 ~~vEvrp~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~~~~~~t~A~y~l~~ 233 (235)
T PF02358_consen 155 KVVEVRPPGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVSVGEKPTAASYRLDD 233 (235)
T ss_dssp SEEEEE-TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES-----------------
T ss_pred CEEEEEeCCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeeccccccccccccccc
Confidence 44555666666877777665433 3689999999999999874 567777733222334456665544
No 177
>PLN02151 trehalose-phosphatase
Probab=94.73 E-value=0.5 Score=46.81 Aligned_cols=36 Identities=3% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE 120 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~ 120 (514)
.+.+++.++|++|. ++..++++|||+...+..+..-
T Consensus 120 ~~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~~~ 155 (354)
T PLN02151 120 FMSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFVKL 155 (354)
T ss_pred cCCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHcCC
Confidence 47899999999998 5689999999999998887654
No 178
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.37 E-value=0.079 Score=49.12 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=70.0
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
.-++-++..+++++||++|..+.++|.-..+ .+.+...+|+......+ ..+. ..=.-++
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~~~l~~~~l~~~fD~v---v~S~-----------------e~g~~KP 169 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDR-LRLLLLPLGLSAYFDFV---VESC-----------------EVGLEKP 169 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHH-HHHHhhccCHHHhhhhh---hhhh-----------------hhccCCC
Confidence 3345677779999999999888888875543 34666777774322111 0000 1112244
Q ss_pred ChhhHHHHHHHHhhCCCEEEEEcCC-cCCHHhhhhcCc-ceeeC
Q 010234 162 EPRHKQEIVRLLKEDGEVVAMTGDG-VNDAPALKLADI-GIAMG 203 (514)
Q Consensus 162 ~p~~k~~iv~~l~~~~~~v~~iGDg-~ND~~ml~~A~i-gvamg 203 (514)
+|.-=...++.++..+++++.+||. .||+..-+.+|. ++-+.
T Consensus 170 Dp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~ 213 (237)
T KOG3085|consen 170 DPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVD 213 (237)
T ss_pred ChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEc
Confidence 5566688999999999999999996 599999999994 56666
No 179
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=94.28 E-value=0.46 Score=49.67 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH-cCCccc-Cccce---ecccChHHHhhhhHHHHHHhhcCceEEE
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE-IGVFEC-NEDIS---LKSLTGKEFMEMHDKKAHLRQSGGLLFS 159 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~-~gi~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (514)
+++++.+. ++++|.+ +++|+-+...++.++++ +|++.- ...+. ...++|. +-.
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~------------------i~g 168 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGF------------------MKK 168 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeee------------------ecC
Confidence 56665554 4567754 99999999999999987 898631 00000 0001100 000
Q ss_pred --ecChhhHHHHHHH-HhhCCCEEEEEcCCcCCHHhhhhcCcceeeCC
Q 010234 160 --RAEPRHKQEIVRL-LKEDGEVVAMTGDGVNDAPALKLADIGIAMGI 204 (514)
Q Consensus 160 --~~~p~~k~~iv~~-l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~ 204 (514)
.+.-++|.+-++. ++..... .+.||+.||.+||+.|+.+++++.
T Consensus 169 ~~~c~Ge~Kv~rl~~~~g~~~~~-~aYgDS~sD~plL~~a~e~y~V~~ 215 (497)
T PLN02177 169 PGVLVGDHKRDAVLKEFGDALPD-LGLGDRETDHDFMSICKEGYMVPR 215 (497)
T ss_pred CCCCccHHHHHHHHHHhCCCCce-EEEECCccHHHHHHhCCccEEeCC
Confidence 0223456555543 3333233 899999999999999999999984
No 180
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=94.10 E-value=0.29 Score=46.31 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=27.9
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHH
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNT 113 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~ 113 (514)
+.+.-|++.+..+.+++.|++++++|||....
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~ 174 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDK 174 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence 44667899999999999999999999998543
No 181
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=94.09 E-value=0.087 Score=51.98 Aligned_cols=111 Identities=15% Similarity=0.235 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHc-C-------CcccCccceeccc------ChHHHhhhhHHHHHH
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREI-G-------VFECNEDISLKSL------TGKEFMEMHDKKAHL 150 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~-g-------i~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 150 (514)
..|++.+++++|+++|+++.++|+.+...+..+.+.+ | +......+....- .+..+..+.......
T Consensus 185 ~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g~~ 264 (343)
T TIGR02244 185 RDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETGSL 264 (343)
T ss_pred cchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCCcc
Confidence 4789999999999999999999999999999999986 6 3221111100000 001111110000000
Q ss_pred h------hcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhh-hcCc
Q 010234 151 R------QSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGV-NDAPALK-LADI 198 (514)
Q Consensus 151 ~------~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~-~A~i 198 (514)
. .....+++.- .-..+.+.++..+++|++|||.. .|+-.-+ .+|.
T Consensus 265 ~~~~~~~l~~g~vY~gG---n~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw 317 (343)
T TIGR02244 265 KWGEVDGLEPGKVYSGG---SLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGW 317 (343)
T ss_pred cCCccccccCCCeEeCC---CHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCc
Confidence 0 0112233332 23667778888999999999986 7988777 6774
No 182
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=93.97 E-value=0.54 Score=44.74 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=40.6
Q ss_pred EEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH---cCCc
Q 010234 76 VGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE---IGVF 124 (514)
Q Consensus 76 lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~---~gi~ 124 (514)
=|++-..+.+-|++.++++.|++.|-++.++|..+-.+-+.++++ +|+.
T Consensus 30 DGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 30 DGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred CcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 377778888999999999999999999999999887777666554 5553
No 183
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=93.94 E-value=0.32 Score=45.70 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=37.0
Q ss_pred EEecccCCCChhHHHHHHHHHHcCCcEEEEC---CCChHHHHHHHHH-cCC
Q 010234 77 GLVGLRDPPRNEVHQAIEDCRAAGIRVMVIT---GDNKNTAEAICRE-IGV 123 (514)
Q Consensus 77 G~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~T---G~~~~~a~~ia~~-~gi 123 (514)
|++.-.+++-+++.++|+.++++|++++++| |++.........+ .|+
T Consensus 7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGV 57 (236)
T ss_pred CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5555556677899999999999999999998 7777766655555 676
No 184
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=93.33 E-value=0.057 Score=47.51 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=65.0
Q ss_pred ccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 81 ~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
+.-..||++.+.++.|.+. +.+++.|......|..+.+.++..... + ...+..+. ....
T Consensus 39 ~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~--f-~~~l~r~~----------------~~~~- 97 (162)
T TIGR02251 39 VYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKV--I-SRRLYRES----------------CVFT- 97 (162)
T ss_pred EEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCE--E-eEEEEccc----------------cEEe-
Confidence 3346899999999999987 999999999999999999988864210 0 00010000 0000
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcce
Q 010234 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGI 200 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igv 200 (514)
.+. -.+-++.++...++|++|||...|+.+-+.+++-+
T Consensus 98 -~~~-~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i 135 (162)
T TIGR02251 98 -NGK-YVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPI 135 (162)
T ss_pred -CCC-EEeEchhcCCChhhEEEEeCChhhhccCccCEeec
Confidence 011 12224455667789999999999998777766554
No 185
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=93.13 E-value=0.13 Score=48.67 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhh
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRH 165 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~ 165 (514)
.++..++++.++++|+++ ++|+.....+.......|.. . +....+ . ...+.....+++|+-
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g-------------~-~~~~i~---~-~g~~~~~~gKP~~~~ 200 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAG-------------Y-YAELIK---Q-LGGKVIYSGKPYPAI 200 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEeccc-------------H-HHHHHH---H-hCCcEecCCCCCHHH
Confidence 478888999888889997 77887655443322222211 0 000000 0 011122345666776
Q ss_pred HHHHHHHHhhC-CCEEEEEcCC-cCCHHhhhhcCcce
Q 010234 166 KQEIVRLLKED-GEVVAMTGDG-VNDAPALKLADIGI 200 (514)
Q Consensus 166 k~~iv~~l~~~-~~~v~~iGDg-~ND~~ml~~A~igv 200 (514)
-..+++.++.. .++++||||+ .+|+.+-+.+|+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~ 237 (242)
T TIGR01459 201 FHKALKECSNIPKNRMLMVGDSFYTDILGANRLGIDT 237 (242)
T ss_pred HHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeE
Confidence 77788888754 5789999999 69999999999753
No 186
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=92.97 E-value=0.24 Score=47.33 Aligned_cols=42 Identities=5% Similarity=0.130 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccC
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECN 127 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~ 127 (514)
.|++.+++++|+++|++++++|+.....+....+.+|+....
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 499999999999999999999999999999999999997543
No 187
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=92.59 E-value=0.38 Score=44.84 Aligned_cols=133 Identities=23% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec--
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA-- 161 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 161 (514)
.+|+++.+.++.|++.+|++.|+|+.-......+.++.|...++..+.+.-+.=++ +..+..-.
T Consensus 90 ~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~--------------~g~l~gF~~~ 155 (246)
T PF05822_consen 90 MLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDE--------------DGVLVGFKGP 155 (246)
T ss_dssp -B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-T--------------TSBEEEE-SS
T ss_pred hhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECC--------------cceEeecCCC
Confidence 57999999999999999999999999999999999988876665444322111000 01111111
Q ss_pred --ChhhHHH-HH---HHHhh--CCCEEEEEcCCcCCHHhhhhc-C--cceeeC--CCCcH----HHHhcccccccCCCch
Q 010234 162 --EPRHKQE-IV---RLLKE--DGEVVAMTGDGVNDAPALKLA-D--IGIAMG--IAGTE----VAKEASDMVLADDDFS 224 (514)
Q Consensus 162 --~p~~k~~-iv---~~l~~--~~~~v~~iGDg~ND~~ml~~A-~--igvamg--~~~~~----~~k~~ad~v~~~~~~~ 224 (514)
.+-.|.+ .+ .+.+. ...+|+-.||+..|+.|-.-. + .-+.+| |...+ .-+++-|+|+.++.--
T Consensus 156 lIH~~NKn~~~l~~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm 235 (246)
T PF05822_consen 156 LIHTFNKNESALEDSPYFKQLKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTM 235 (246)
T ss_dssp ---TT-HHHHHHTTHHHHHCTTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-
T ss_pred ceEEeeCCcccccCchHHHHhccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCc
Confidence 1112221 11 22222 356899999999999998766 2 112222 22333 3456779999876655
Q ss_pred hHHHHH
Q 010234 225 TIVSAV 230 (514)
Q Consensus 225 ~i~~~i 230 (514)
.++..|
T Consensus 236 ~v~~~i 241 (246)
T PF05822_consen 236 DVPNAI 241 (246)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 555544
No 188
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=92.35 E-value=1.1 Score=40.60 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=77.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
+.+..++.+-.|+.++ -|+.|.-...-|.++.+.+||.++.+.+........ .+..+.|+++++
T Consensus 101 PD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np--------------~~~~~vcKP~~~ 164 (244)
T KOG3109|consen 101 PDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNP--------------IEKTVVCKPSEE 164 (244)
T ss_pred CCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCC--------------CCCceeecCCHH
Confidence 4455567777777665 899999999999999999999887665433222111 125688999999
Q ss_pred hHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcCcc
Q 010234 165 HKQEIVRLLKED-GEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 165 ~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
.-..+.+..+.. +++++.|-|+.+.+..-+..|..
T Consensus 165 afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~ 200 (244)
T KOG3109|consen 165 AFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLK 200 (244)
T ss_pred HHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccce
Confidence 999999999988 89999999999999999988843
No 189
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=92.13 E-value=0.2 Score=41.77 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHH
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAE 115 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~ 115 (514)
+++.+++.+++++++++|+.++++|||+.....
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 468899999999999999999999999976544
No 190
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=92.09 E-value=0.32 Score=42.21 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=52.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHH----HHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNT----AEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~----a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
+++-+++.|+-=+++|-.++.+|||.... ++.+++...|...+ .++|+-
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~---------------------------pv~f~G 167 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMN---------------------------PVIFAG 167 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCc---------------------------ceeecc
Confidence 34445677777778899999999998654 34455555553221 233333
Q ss_pred cCh----hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc-ce
Q 010234 161 AEP----RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI-GI 200 (514)
Q Consensus 161 ~~p----~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i-gv 200 (514)
..| .+|... ++. ...-+.-||+.||+.+-+.||+ ||
T Consensus 168 dk~k~~qy~Kt~~---i~~-~~~~IhYGDSD~Di~AAkeaG~RgI 208 (237)
T COG3700 168 DKPKPGQYTKTQW---IQD-KNIRIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred CCCCcccccccHH---HHh-cCceEEecCCchhhhHHHhcCccce
Confidence 322 223222 222 2345778999999999999984 45
No 191
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=91.59 E-value=0.47 Score=45.43 Aligned_cols=41 Identities=10% Similarity=0.114 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCccc
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC 126 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~ 126 (514)
.|++.++|++|+++|++++++|+.+...+....+.+|+...
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~y 190 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGY 190 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcc
Confidence 49999999999999999999999888999999999999654
No 192
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=91.44 E-value=2.5 Score=40.26 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=74.2
Q ss_pred cCCCChhHHHHHHHHHHc-CCcEEEECCCChHHHHHHHHHcCC--cccCccce--------ecccChHHHh---hhhHHH
Q 010234 82 RDPPRNEVHQAIEDCRAA-GIRVMVITGDNKNTAEAICREIGV--FECNEDIS--------LKSLTGKEFM---EMHDKK 147 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~-Gi~v~i~TG~~~~~a~~ia~~~gi--~~~~~~~~--------~~~~~~~~~~---~~~~~~ 147 (514)
...+.++..+.+++|.+. ..-++|+|||+.........-.|+ ...++... .......... ++.+..
T Consensus 38 ~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i~l~aehGa~~r~~~g~~~~~~~~~~~~~~~~~v~~~l 117 (266)
T COG1877 38 AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGIGLIAEHGAEVRDPNGKWWINLAEEADLRWLKEVAAIL 117 (266)
T ss_pred ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCccEEEecceEEecCCCCeeEecCHHHHhhHHHHHHHHH
Confidence 446889999999999877 456999999999999988764333 32222111 1111111111 010000
Q ss_pred H-----------------------------------------------HHhhcCceEEEecChhhHHHHHHHH-hhCCC-
Q 010234 148 A-----------------------------------------------HLRQSGGLLFSRAEPRHKQEIVRLL-KEDGE- 178 (514)
Q Consensus 148 ~-----------------------------------------------~~~~~~~~i~~~~~p~~k~~iv~~l-~~~~~- 178 (514)
+ .....+.++.+|++-..|...++.+ +..+.
T Consensus 118 ~~~v~r~pGs~iE~K~~a~~~Hyr~a~~~~~~~~a~~~~~~~~~~~~~~v~~gk~vVEvrp~~~~KG~a~~~i~~~~~~~ 197 (266)
T COG1877 118 EYYVERTPGSYIERKGFAVALHYRNAEDDEGAALALAEAATLINELKLRVTPGKMVVELRPPGVSKGAAIKYIMDELPFD 197 (266)
T ss_pred HHHhhcCCCeEEEEcCcEEEEeeccCCchhhHHHHHHHHHhccccccEEEEeCceEEEEeeCCcchHHHHHHHHhcCCCC
Confidence 0 0001134566777777788888744 44443
Q ss_pred --EEEEEcCCcCCHHhhhhcC----cceeeC
Q 010234 179 --VVAMTGDGVNDAPALKLAD----IGIAMG 203 (514)
Q Consensus 179 --~v~~iGDg~ND~~ml~~A~----igvamg 203 (514)
-+++.||...|-.||+..+ ++|-+|
T Consensus 198 ~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~ 228 (266)
T COG1877 198 GRFPIFAGDDLTDEDAFAAVNKLDSITVKVG 228 (266)
T ss_pred CCcceecCCCCccHHHHHhhccCCCceEEec
Confidence 4899999999999999987 455555
No 193
>PTZ00445 p36-lilke protein; Provisional
Probab=90.63 E-value=1.9 Score=39.21 Aligned_cols=151 Identities=10% Similarity=0.093 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHH
Q 010234 15 SRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIE 94 (514)
Q Consensus 15 ~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~ 94 (514)
.++..+...+.+.+.|.|++++=.-. .--. .++.- +.+-.++. ..+-..++|+.++.++
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~Dn---TlI~--------~HsgG-----~~~~~~~~-----~~~~~~~tpefk~~~~ 85 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDFDL---TMIT--------KHSGG-----YIDPDNDD-----IRVLTSVTPDFKILGK 85 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecchh---hhhh--------hhccc-----ccCCCcch-----hhhhccCCHHHHHHHH
Confidence 34556677888999999999875321 1000 00000 00000000 1112247999999999
Q ss_pred HHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCce------------------
Q 010234 95 DCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGL------------------ 156 (514)
Q Consensus 95 ~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 156 (514)
+|+++||+++++|=..... +...+. ...+.|+++.+..-........-..
T Consensus 86 ~l~~~~I~v~VVTfSd~~~---------~~~~~~---~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 86 RLKNSNIKISVVTFSDKEL---------IPSENR---PRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred HHHHCCCeEEEEEccchhh---------ccccCC---cceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhh
Confidence 9999999999999665433 111110 1123333332221111000000001
Q ss_pred EEEecChhh--H--HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc
Q 010234 157 LFSRAEPRH--K--QEIVRLLKEDGEVVAMTGDGVNDAPALKLADI 198 (514)
Q Consensus 157 i~~~~~p~~--k--~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i 198 (514)
-...+.|+. - .++++..+..+++++.|=|....+.+.+..|+
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi 199 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGY 199 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCC
Confidence 122345555 3 67888889999999999999999999999885
No 194
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=88.50 E-value=0.83 Score=40.27 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=31.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECC-CChHHHHHHHHHcCCc
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITG-DNKNTAEAICREIGVF 124 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG-~~~~~a~~ia~~~gi~ 124 (514)
=.+-|++.+.|+.|+++|+++.++|- +.+..|+.+.+.+++.
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 35789999999999999999999994 6688999999999997
No 195
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=88.21 E-value=3.1 Score=38.39 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHH----HHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEE
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNT----AEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFS 159 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~----a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (514)
+.-||+.|.++-.-+.|..+..+|.|..+. +..=..+.|+...... ..++-
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~-------------------------~~llk 176 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLES-------------------------HLLLK 176 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccccccc-------------------------ceEEe
Confidence 456899999999999999999999998665 3333445566442221 11222
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhh
Q 010234 160 RAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKL 195 (514)
Q Consensus 160 ~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~ 195 (514)
-....|..-.+.+++..+.|+-|||..+|..-...
T Consensus 177 -k~~k~Ke~R~~~v~k~~~iVm~vGDNl~DF~d~~~ 211 (274)
T COG2503 177 -KDKKSKEVRRQAVEKDYKIVMLVGDNLDDFGDNAY 211 (274)
T ss_pred -eCCCcHHHHHHHHhhccceeeEecCchhhhcchhh
Confidence 22223333333444477789999999999865443
No 196
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=87.84 E-value=1.4 Score=40.66 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=71.4
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcC-CcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG-VFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~g-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
.+-||+.+.++.|+..|+++.++|+.+..+...-.+..+ +......... .++. .+-..++.
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~--~d~~----------------~v~~gKP~ 153 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVL--GDDP----------------EVKNGKPD 153 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCee--cCCc----------------cccCCCCC
Confidence 456799999999999999999999997666555444443 3221111000 1111 11222567
Q ss_pred hhhHHHHHHHHhhCC-CEEEEEcCCcCCHHhhhhcCcceee
Q 010234 163 PRHKQEIVRLLKEDG-EVVAMTGDGVNDAPALKLADIGIAM 202 (514)
Q Consensus 163 p~~k~~iv~~l~~~~-~~v~~iGDg~ND~~ml~~A~igvam 202 (514)
|+--....+.++..+ +.++++.|+.+=+.+.++||.-+-|
T Consensus 154 Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~ 194 (222)
T KOG2914|consen 154 PDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVG 194 (222)
T ss_pred chHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEE
Confidence 777788888999888 9999999999999999999966554
No 197
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.58 E-value=16 Score=41.02 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.3
Q ss_pred CChhHHHHHHHHHHc-CCcEEEECCCChHHHHHHHHHcC
Q 010234 85 PRNEVHQAIEDCRAA-GIRVMVITGDNKNTAEAICREIG 122 (514)
Q Consensus 85 l~~~~~~~I~~l~~~-Gi~v~i~TG~~~~~a~~ia~~~g 122 (514)
+.+++.+++++|.+. +..|+|+|||+..........++
T Consensus 533 p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~ 571 (797)
T PLN03063 533 LHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN 571 (797)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC
Confidence 678899999999865 78999999999999998876543
No 198
>PLN02645 phosphoglycolate phosphatase
Probab=83.96 E-value=1.6 Score=42.88 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=34.5
Q ss_pred EEecChhhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhcCc
Q 010234 158 FSRAEPRHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLADI 198 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A~i 198 (514)
+.+++|.--..+++.++...++++||||.. +|+.+-+.||+
T Consensus 228 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~ 269 (311)
T PLN02645 228 VGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQNGGC 269 (311)
T ss_pred CCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCC
Confidence 345666666778888888899999999997 99999999994
No 199
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=83.04 E-value=6 Score=38.36 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHH-HHHHHHHcCC
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNT-AEAICREIGV 123 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~-a~~ia~~~gi 123 (514)
.+++...-+.|++.|.+++++|.+.... .+...+.++.
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAGL 100 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHhh
Confidence 6888888899999999999999886444 3445555555
No 200
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=78.26 E-value=6.1 Score=37.47 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHH---cCCcccCccceecccChHHHhhh----hHHHHHHhhcCce
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICRE---IGVFECNEDISLKSLTGKEFMEM----HDKKAHLRQSGGL 156 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~---~gi~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 156 (514)
.+-+++.+.|+.|+++|++++-+|.|.+.......++ +|++-..... ..+.+... ..........+.+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~-----~~~~~~~~~~~~~~~~~~~~~~~GI 155 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSF-----PEDGIISFPVFDSALSRAPSFYDGI 155 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCcccccc-----ccCcceecccccCCCCCCceeecCe
Confidence 4678999999999999999999999997766655544 5665432210 00000000 0000000111244
Q ss_pred EEEecChh--hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhc
Q 010234 157 LFSRAEPR--HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 157 i~~~~~p~--~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A 196 (514)
+|+...+. ....++..++..++.+++|-|....+..+..|
T Consensus 156 lft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a 197 (252)
T PF11019_consen 156 LFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKA 197 (252)
T ss_pred EEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 55444332 22445556677789999999999877655443
No 201
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=75.75 E-value=8.6 Score=33.89 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=62.7
Q ss_pred ccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEe
Q 010234 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSR 160 (514)
Q Consensus 81 ~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (514)
++.++-|++.++|++-+++|+++.+-|..+...-+-+.... + ..++..+... ..+..+..+
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs---~-----------agdL~~lfsG-----yfDttiG~K 160 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHS---D-----------AGDLNSLFSG-----YFDTTIGKK 160 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhccc---c-----------cccHHhhhcc-----eeecccccc
Confidence 35578999999999999999999998887654333222111 0 0001000000 001112222
Q ss_pred cChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc
Q 010234 161 AEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI 198 (514)
Q Consensus 161 ~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i 198 (514)
.....-.++.+..+..+.+++..-|..+.+.+-+.+|+
T Consensus 161 rE~~SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 161 RESQSYAKIAGDIGLPPAEILFLSDNPEELKAAAGVGL 198 (229)
T ss_pred ccchhHHHHHHhcCCCchheEEecCCHHHHHHHHhcch
Confidence 23344578899999999999999999998888776664
No 202
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=73.04 E-value=5.8 Score=40.90 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcc------cCccceecccChHHHhhh-hHHHH----------
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFE------CNEDISLKSLTGKEFMEM-HDKKA---------- 148 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~------~~~~~~~~~~~~~~~~~~-~~~~~---------- 148 (514)
.|+....+++|+++|.++.++|+.+...+..+..-+ +.. ++....-.++.+..-... .+...
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl-~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g~ 263 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYL-LGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETGK 263 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHH-CGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTSS
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhc-cCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCCc
Confidence 578999999999999999999999999998888775 322 333332222222110000 00000
Q ss_pred ------HHhhcCceEEEecChhhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhc
Q 010234 149 ------HLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLA 196 (514)
Q Consensus 149 ------~~~~~~~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A 196 (514)
........+++.-+- ..+.+.++..+.+|+.|||.. .|+.--+..
T Consensus 264 l~~~~~~~~l~~g~vY~gGn~---~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~ 315 (448)
T PF05761_consen 264 LKWGKYVGPLEKGKVYSGGNW---DQLHKLLGWRGKEVLYFGDHIYGDILKSKKR 315 (448)
T ss_dssp EECS---SS--TC-EEEE--H---HHHHHHCT--GGGEEEEESSTTTTHHHHHHH
T ss_pred cccccccccccCCCEeecCCH---HHHHHHHccCCCeEEEECCchhhhhhhhccc
Confidence 001112334444443 455666778899999999987 698666554
No 203
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=70.20 E-value=18 Score=35.63 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=38.6
Q ss_pred EEEecccCCCChhHHHHHHHHHHc----CCcEEEECCCC---hHH-HHHHHHHcCCc
Q 010234 76 VGLVGLRDPPRNEVHQAIEDCRAA----GIRVMVITGDN---KNT-AEAICREIGVF 124 (514)
Q Consensus 76 lG~~~~~~~l~~~~~~~I~~l~~~----Gi~v~i~TG~~---~~~-a~~ia~~~gi~ 124 (514)
=|++.-.+++-+++.++++.|++. |+++.++|... ... +..+.+++|+.
T Consensus 8 DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 8 DGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred cCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 477777788899999999999998 99999999665 333 44455777774
No 204
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.53 E-value=24 Score=34.32 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=44.6
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCC-cCCH---HhhhhcCcceeeCCCCc---HHHHhcccccccC
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDG-VNDA---PALKLADIGIAMGIAGT---EVAKEASDMVLAD 220 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg-~ND~---~ml~~A~igvamg~~~~---~~~k~~ad~v~~~ 220 (514)
.+.-++|..-.+++++++. .+.+++.+|-| .-=. .+|..+|..|.+-+..+ ..+...||+++.-
T Consensus 137 ~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsa 209 (301)
T PRK14194 137 VLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAA 209 (301)
T ss_pred CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 4567888888999998865 58899999997 4343 35667887776653332 2334568988753
No 205
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.06 E-value=13 Score=34.69 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
+|+++.+..+.|++.+|++.++|..-......+.++.....++..+.+.-..=.+-..+......+ ...|.+.. .
T Consensus 139 lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~L----ihtfnkn~-~ 213 (298)
T KOG3128|consen 139 LREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPL----IHTFNKNS-S 213 (298)
T ss_pred HHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHH----HHHHccch-H
Confidence 678899999999999999999999888888777666544333322111000000000000000000 00111111 1
Q ss_pred hHHHHHHHHhh--CCCEEEEEcCCcCCHHhhhhcC-----cceeeCCCCcH----HHHhcccccccCCCchhHHH
Q 010234 165 HKQEIVRLLKE--DGEVVAMTGDGVNDAPALKLAD-----IGIAMGIAGTE----VAKEASDMVLADDDFSTIVS 228 (514)
Q Consensus 165 ~k~~iv~~l~~--~~~~v~~iGDg~ND~~ml~~A~-----igvamg~~~~~----~~k~~ad~v~~~~~~~~i~~ 228 (514)
......++++. .+..|+..||+..|+.|-..+- .-+..++..-| .-++.-|+|+.++....++.
T Consensus 214 v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~~D~tldv~~ 288 (298)
T KOG3128|consen 214 VLQNESEYFHQLAGRVNVILLGDSIGDLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLVHDETLDVAN 288 (298)
T ss_pred HHHhhhHHHhhccCCceEEEeccccccchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEecCcccchhH
Confidence 11222344433 3567899999999999865432 11222322222 22445677877666555443
No 206
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=68.61 E-value=33 Score=28.61 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=47.0
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
+++.++..+.+++ |+.+.+............++.. ..++....
T Consensus 5 ~~~~~~~~~~l~~----~~~v~~~~~~~~~~~~~~l~~~---------------------------------d~ii~~~~ 47 (133)
T PF00389_consen 5 DPLPDEEIERLEE----GFEVEFCDSPSEEELAERLKDA---------------------------------DAIIVGSG 47 (133)
T ss_dssp SS-SHHHHHHHHH----TSEEEEESSSSHHHHHHHHTTE---------------------------------SEEEESTT
T ss_pred ccCCHHHHHHHHC----CceEEEeCCCCHHHHHHHhCCC---------------------------------eEEEEcCC
Confidence 4556665555544 7777777755554444333322 22344444
Q ss_pred hhhHHHHHHHHhhCCCEEEEEcCCcC--CHHhhhhcCcceeeC
Q 010234 163 PRHKQEIVRLLKEDGEVVAMTGDGVN--DAPALKLADIGIAMG 203 (514)
Q Consensus 163 p~~k~~iv~~l~~~~~~v~~iGDg~N--D~~ml~~A~igvamg 203 (514)
+.-..++++.+ ...+-+...|-|.| |++.++.-|+-|+=.
T Consensus 48 ~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~ 89 (133)
T PF00389_consen 48 TPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERGIPVTNV 89 (133)
T ss_dssp STBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEEEE-
T ss_pred CCcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCeEEEEEe
Confidence 42234555555 45567888899988 788888888877643
No 207
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=65.02 E-value=27 Score=28.55 Aligned_cols=40 Identities=23% Similarity=0.464 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHHcCCc-EEEECCCChHHHHHHHHHcCCc
Q 010234 85 PRNEVHQAIEDCRAAGIR-VMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~-v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
..+.+.+.++++.+.|++ +|+.+|...+.+...+++.|+.
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIR 104 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCE
Confidence 467889999999999986 7888998889999999998874
No 208
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=64.61 E-value=9.3 Score=33.24 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=37.4
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
.-+++|++.+.+++|++. ++++++|......|..+.+.++..
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcC
Confidence 345799999999999855 999999999999999999998865
No 209
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=64.47 E-value=1.2e+02 Score=29.29 Aligned_cols=155 Identities=10% Similarity=0.185 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccC-CCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFET-YDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDC 96 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l 96 (514)
+..+...+++.+|+.++.++.+.=++-.-- -+.+ +. .....+.++.+.+.. ..-+|+++=.-...++..+.++.|
T Consensus 101 kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~--~~-~~vv~~~~d~~~l~~-~~~v~vvsQTT~~~~~~~~i~~~l 176 (280)
T TIGR00216 101 KVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAP--DK-AIVVETLEDLENFKV-EDLLGVVSQTTLSQEDTKEIVAEL 176 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcC--CC-EEEECCHHHHHhCCC-CCcEEEEEcCCCcHHHHHHHHHHH
Confidence 466778899999999999998752221100 0000 00 000111122222211 122666665555667777777778
Q ss_pred HHcC----C----cEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHH
Q 010234 97 RAAG----I----RVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQE 168 (514)
Q Consensus 97 ~~~G----i----~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~ 168 (514)
+++. + .++-+|-+....+..+++++.+. .+....+-.+-.+
T Consensus 177 ~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~m-------------------------------iVVGg~nSsNT~r 225 (280)
T TIGR00216 177 KARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLM-------------------------------IVIGGKNSSNTTR 225 (280)
T ss_pred HHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEE-------------------------------EEECCCCCchHHH
Confidence 7765 2 34566777777777777765431 1222222234445
Q ss_pred HHHHHhhCCCEEEEEcCC-cCCHHhhhhcC-cceeeCCCCc
Q 010234 169 IVRLLKEDGEVVAMTGDG-VNDAPALKLAD-IGIAMGIAGT 207 (514)
Q Consensus 169 iv~~l~~~~~~v~~iGDg-~ND~~ml~~A~-igvamg~~~~ 207 (514)
+.+.-+..+..+..|.+. .-|-++|+.++ +||.-|.+.+
T Consensus 226 L~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP 266 (280)
T TIGR00216 226 LYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTP 266 (280)
T ss_pred HHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCC
Confidence 555555555667777664 34777888765 7998883333
No 210
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=64.42 E-value=87 Score=30.45 Aligned_cols=154 Identities=13% Similarity=0.176 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccc-cccCCCcccccc-CCcEEEEEecccCCCChhHHHHHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHT-LLLNPSNYASME-CGLTFVGLVGLRDPPRNEVHQAIED 95 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e-~~l~~lG~~~~~~~l~~~~~~~I~~ 95 (514)
+..+.+.+++.+|+.++.++.+.=.+-.--.- +-+... ...+.++.+.++ .+..=+++++=.-...++..+.++.
T Consensus 101 k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g---~~~~~~~vv~~~~e~~~l~~~~~~~v~vvsQTT~~~~~~~~i~~~ 177 (298)
T PRK01045 101 KVHKEVARMSREGYEIILIGHKGHPEVEGTMG---QAPGGVYLVESPEDVAKLEVKDPDKLALVTQTTLSVDDTAEIIAA 177 (298)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCeeeeecc---CcCCCEEEEcCHHHHhhcccCCCCcEEEEEcCCCcHHHHHHHHHH
Confidence 45677889999999999999875221100000 000000 011111222221 1123355555444455666666666
Q ss_pred HHHcCCcE--------EEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHH
Q 010234 96 CRAAGIRV--------MVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQ 167 (514)
Q Consensus 96 l~~~Gi~v--------~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~ 167 (514)
|++..-.+ +-+|-+....+..++++.... .+....+-.+-.
T Consensus 178 l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~m-------------------------------iVVGg~~SsNT~ 226 (298)
T PRK01045 178 LKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLV-------------------------------IVVGSKNSSNSN 226 (298)
T ss_pred HHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEE-------------------------------EEECCCCCccHH
Confidence 66554222 224444555555555544321 122222223334
Q ss_pred HHHHHHhhCCCEEEEEcCC-cCCHHhhhhcC-cceeeCCC
Q 010234 168 EIVRLLKEDGEVVAMTGDG-VNDAPALKLAD-IGIAMGIA 205 (514)
Q Consensus 168 ~iv~~l~~~~~~v~~iGDg-~ND~~ml~~A~-igvamg~~ 205 (514)
++.+.-+..+..+..|.+- .-|-.+|+..+ +||.-|.+
T Consensus 227 kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGAS 266 (298)
T PRK01045 227 RLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGAS 266 (298)
T ss_pred HHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCC
Confidence 4555555555567777663 34667777554 89988833
No 211
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.34 E-value=1.2e+02 Score=29.22 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=44.1
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVND----APALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~ND----~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-|.-++|..-.+++++++. .+.+++.+|-|..= ..||...|..|.+-+..+. ..-..||+++.
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIV 206 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 4677899999999998874 57899999998752 4466666766665544433 23456888774
No 212
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.25 E-value=55 Score=31.53 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=41.2
Q ss_pred EEecChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 158 FSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVND----APALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~ND----~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
|.-++|..-.+++++++. .+.+++.+|-|..= ..||...|..|..-++.+. ..-..||+++.
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 567888888889988764 58899999998752 3355555655544333332 23456788775
No 213
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.81 E-value=1.1e+02 Score=29.63 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=44.0
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC-C---HHhhhhcCcceeeCCCCcH---HHHhcccccccC
Q 010234 156 LLFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN-D---APALKLADIGIAMGIAGTE---VAKEASDMVLAD 220 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N-D---~~ml~~A~igvamg~~~~~---~~k~~ad~v~~~ 220 (514)
..|.-++|..-.+++++++. .+.+++.+|-|.. - ..||...|..|.+-+..++ ..-..||+++.-
T Consensus 135 ~~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~a 208 (285)
T PRK14189 135 PLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAA 208 (285)
T ss_pred CCCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEc
Confidence 34677889888999998874 5789999999876 2 3456666666654433332 234568888753
No 214
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=58.71 E-value=1.1e+02 Score=34.88 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHc-CCcEEEECCCChHHHHHHHHHcC
Q 010234 84 PPRNEVHQAIEDCRAA-GIRVMVITGDNKNTAEAICREIG 122 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~-Gi~v~i~TG~~~~~a~~ia~~~g 122 (514)
.+.+++.+++++|.+. +..|+|+|||+..........++
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~ 661 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD 661 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 3668899999999865 78999999999999998876654
No 215
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.89 E-value=48 Score=31.91 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=43.1
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.+.-+||..-.+++++++. .+.+++.+|-|.. =..||...|..|.+-++.+. ..-..||+++.
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEE
Confidence 3567888888899998875 5789999999875 23456666666655544332 23456888774
No 216
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=57.68 E-value=12 Score=30.69 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=43.1
Q ss_pred cCCcEEEEEecccCCCChhHHHHHHHHHHcCC--cEEEECCCChHHHHHHHHHcCCcc
Q 010234 70 ECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI--RVMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 70 e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi--~v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
+.+-.++|+-.....-.+.+.+.++.+++.+- ..+++.|.........+++.|.+.
T Consensus 48 ~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~ 105 (119)
T cd02067 48 EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDA 105 (119)
T ss_pred HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeE
Confidence 45667888888877777999999999999975 457778877665456788888753
No 217
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.32 E-value=1.2e+02 Score=29.43 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=40.7
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC---CHH-hhh------hcCcceeeCCCC-cHHHHhcccccccC
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN---DAP-ALK------LADIGIAMGIAG-TEVAKEASDMVLAD 220 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N---D~~-ml~------~A~igvamg~~~-~~~~k~~ad~v~~~ 220 (514)
-+.-+||..-.++++.++. .+.+|+.+|-|.. -+. ||. .|.+-++-.... .+..-..||+++..
T Consensus 137 ~~~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~A 213 (295)
T PRK14174 137 CFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAA 213 (295)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEe
Confidence 4667899988999998874 5899999999875 233 332 234444433111 12334668888753
No 218
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=55.42 E-value=1.5e+02 Score=28.48 Aligned_cols=153 Identities=12% Similarity=0.106 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccc-cccCCCccccccCCcEEEEEecccCCCChhHHHHHHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHT-LLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDC 96 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l 96 (514)
+......+++.+|+.++.++.+.=.+-.--.- +-+... -..+.++.+.++. ..=+++++=.-...++..+.++.|
T Consensus 104 k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g---~~~~~~~vv~~~~d~~~l~~-~~kv~~vsQTT~~~~~~~~iv~~l 179 (281)
T PRK12360 104 KIQNIVEEYYNKGYSIIIVGDKNHPEVIGING---WCDNSAYIVNSIEEVENIPF-LDKACVVAQTTIIPELWEDILNVI 179 (281)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCceeeEecc---CcCCCeEEECCHHHHhhCcc-ccCEEEEECCCCcHHHHHHHHHHH
Confidence 45667889999999999999775221100000 000000 0111111122110 122444444444556666666666
Q ss_pred HHcCCcE------EEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHH
Q 010234 97 RAAGIRV------MVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIV 170 (514)
Q Consensus 97 ~~~Gi~v------~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv 170 (514)
+++.-.+ +-+|-+....+..+++++.+. .+....+-.+-.++.
T Consensus 180 ~~~~~~~~v~~TIC~aT~~RQ~a~~~La~~vD~m-------------------------------iVVGg~~SsNT~rL~ 228 (281)
T PRK12360 180 KLKSKELVFFNTICSATKKRQESAKELSKEVDVM-------------------------------IVIGGKHSSNTQKLV 228 (281)
T ss_pred HHhCcccccCCCcchhhhhHHHHHHHHHHhCCEE-------------------------------EEecCCCCccHHHHH
Confidence 6554332 333444455555555544321 122222223344455
Q ss_pred HHHhhCCCEEEEEcC-CcCCHHhhhhcC-cceeeCCC
Q 010234 171 RLLKEDGEVVAMTGD-GVNDAPALKLAD-IGIAMGIA 205 (514)
Q Consensus 171 ~~l~~~~~~v~~iGD-g~ND~~ml~~A~-igvamg~~ 205 (514)
+.-+..+..+..|.+ +.-|.++|+.++ +||.-|.+
T Consensus 229 eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGAS 265 (281)
T PRK12360 229 KICEKNCPNTFHIETADELDLEMLKDYKIIGITAGAS 265 (281)
T ss_pred HHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCC
Confidence 555555556777755 345777888664 89988833
No 219
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.05 E-value=1.2e+02 Score=29.12 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=41.6
Q ss_pred EEecChhhHHHHHHHHh--hCCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 158 FSRAEPRHKQEIVRLLK--EDGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l~--~~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
+.-++|..-.+++++++ ..+.+++.+|-|.. =..||...|.-|.+-+..+. ..-..||+++.
T Consensus 136 ~~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 136 PRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVA 206 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 56788888899999887 45789999999875 24466555555544433333 22345888774
No 220
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.78 E-value=1.6e+02 Score=28.44 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=41.6
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-+.-+||..-.+++++++. .+.+|+.+|.|.. =..||...|..|.+-...++ ..-..||+++.
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 135 GFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEE
Confidence 3667899999999998875 4789999999943 23455555655544323332 23456787764
No 221
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.22 E-value=2.1e+02 Score=27.59 Aligned_cols=177 Identities=15% Similarity=0.179 Sum_probs=93.0
Q ss_pred CcccCCceeeCCHHHHHHHHHHHHHHhhc-CCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEe
Q 010234 1 MQLLDGSVVPLDHKSRNLILDALHEMSTG-ALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLV 79 (514)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~ 79 (514)
|-..+|+ ++.++.++++++.++++.++ |.+. .+|--...
T Consensus 1 ~~ildGk--~va~~i~~~lk~~v~~~~~~~g~~P-~La~I~vg------------------------------------- 40 (282)
T PRK14180 1 MILIDGK--SLSKDLKERLATQVQEYKHHTAITP-KLVAIIVG------------------------------------- 40 (282)
T ss_pred CceeeHH--HHHHHHHHHHHHHHHHHHhccCCCC-eEEEEEeC-------------------------------------
Confidence 3345565 57788899999999998776 6443 22221111
Q ss_pred cccCC-CChhHHHHHHHHHHcCCcEEEE---CCCChHHHHHHHHHcCCcccCccceec-ccC----hHH----------H
Q 010234 80 GLRDP-PRNEVHQAIEDCRAAGIRVMVI---TGDNKNTAEAICREIGVFECNEDISLK-SLT----GKE----------F 140 (514)
Q Consensus 80 ~~~~~-l~~~~~~~I~~l~~~Gi~v~i~---TG~~~~~a~~ia~~~gi~~~~~~~~~~-~~~----~~~----------~ 140 (514)
.|+ -.--++..++.+++.|+.+-.. ............++++-+.....+... .+. ..+ .
T Consensus 41 --~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDV 118 (282)
T PRK14180 41 --NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDV 118 (282)
T ss_pred --CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccc
Confidence 111 0123345666677778877665 333445555555665433322221111 110 011 1
Q ss_pred hhhhHHH-HHHhhcCceEEEecChhhHHHHHHHHhhC--CCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HH
Q 010234 141 MEMHDKK-AHLRQSGGLLFSRAEPRHKQEIVRLLKED--GEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VA 210 (514)
Q Consensus 141 ~~~~~~~-~~~~~~~~~i~~~~~p~~k~~iv~~l~~~--~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~ 210 (514)
+.+.... ..+...+..-+.-++|..-.+++++++.+ +.+++.+|-|.. =..||...|..|.+-+..+. ..
T Consensus 119 DGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~ 198 (282)
T PRK14180 119 DGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSH 198 (282)
T ss_pred cccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHH
Confidence 1111110 01111112346678999999999988754 889999999875 23456555655555433332 22
Q ss_pred Hhccccccc
Q 010234 211 KEASDMVLA 219 (514)
Q Consensus 211 k~~ad~v~~ 219 (514)
-..||+++.
T Consensus 199 ~k~ADIvIs 207 (282)
T PRK14180 199 TTKADILIV 207 (282)
T ss_pred hhhcCEEEE
Confidence 456788764
No 222
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=54.10 E-value=52 Score=29.13 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHH-HHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhh
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNT-AEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRH 165 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~-a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~ 165 (514)
.|..+++.++++.|-++.+++=++... ...+.+-+|+. ...+.-.++++
T Consensus 64 ~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~------------------------------i~~~~~~~~~e 113 (176)
T PF06506_consen 64 FDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVD------------------------------IKIYPYDSEEE 113 (176)
T ss_dssp HHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-E------------------------------EEEEEESSHHH
T ss_pred hHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCc------------------------------eEEEEECCHHH
Confidence 444555555555566666666554332 55555555552 34555667888
Q ss_pred HHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhHHHHHHH
Q 010234 166 KQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSIYNNMKA 242 (514)
Q Consensus 166 k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~~~~i~~ 242 (514)
-...++.+...+- -+.+|++.- +.+.+..|+ ..+......+++..++++++++.+..++
T Consensus 114 ~~~~i~~~~~~G~-~viVGg~~~-~~~A~~~gl----------------~~v~i~sg~esi~~Al~eA~~i~~~~~~ 172 (176)
T PF06506_consen 114 IEAAIKQAKAEGV-DVIVGGGVV-CRLARKLGL----------------PGVLIESGEESIRRALEEALRIARARRR 172 (176)
T ss_dssp HHHHHHHHHHTT---EEEESHHH-HHHHHHTTS----------------EEEESS--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-cEEECCHHH-HHHHHHcCC----------------cEEEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887763 344555431 233333332 3344455678888899999988876653
No 223
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=53.42 E-value=47 Score=27.09 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=29.8
Q ss_pred CCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcC
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG 122 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~g 122 (514)
.--.+++.++++.++++|++++.+|++.. ..+.+++.|
T Consensus 53 SG~t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~ 90 (119)
T cd05017 53 SGNTEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHG 90 (119)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcC
Confidence 34578999999999999999999998763 444565544
No 224
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=52.97 E-value=29 Score=30.29 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=36.8
Q ss_pred CcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH
Q 010234 72 GLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC 118 (514)
Q Consensus 72 ~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia 118 (514)
+-+++|+-..- -++++.+++++.+++|++++-+||++-.....++
T Consensus 110 GDvLigISTSG--NS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 110 GDVLIGISTSG--NSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLL 154 (176)
T ss_pred CCEEEEEeCCC--CCHHHHHHHHHHHHcCCEEEEEecCCCccccccc
Confidence 34666766554 5789999999999999999999999987777666
No 225
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.89 E-value=1.5e+02 Score=28.42 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=44.3
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.|.-++|..-.+++++++. .+.+++.+|-|.. =..||...|..|.+-++.+. ..-..||+++.
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 136 CFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVV 207 (278)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 3677899999999998875 6789999999875 24466667766666544333 22355888764
No 226
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=51.47 E-value=1.8e+02 Score=27.92 Aligned_cols=155 Identities=12% Similarity=0.175 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccc-cCCCccccc----cCCcEEEEEecccCCCChhHHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLL-LNPSNYASM----ECGLTFVGLVGLRDPPRNEVHQA 92 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----e~~l~~lG~~~~~~~l~~~~~~~ 92 (514)
+..+..++++++|+.++.++.+.=.+-.-..- ++-+....+ ...++...+ ++++.++-=.. -..+++.+.
T Consensus 102 Kvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~G--q~~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTT---ls~ddt~~I 176 (294)
T COG0761 102 KVHKEVERYAREGYEIILIGHKGHPEVIGTMG--QYPEGGVLLVESVEDVANLKVQLPDKLAFVTQTT---LSVDDTAEI 176 (294)
T ss_pred HHHHHHHHHHhCCCEEEEEccCCCCceeeecc--ccCCCceEEEecHHHHHhcccCCcccEEEEeeee---cCHHHHHHH
Confidence 46678899999999999999875322110000 000000001 111112222 22344433333 346888888
Q ss_pred HHHHHHcCC--------cEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 93 IEDCRAAGI--------RVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 93 I~~l~~~Gi--------~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
++.|+++=- .++.+|-.....++.++.++.+. .+....+..
T Consensus 177 v~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~-------------------------------iVVG~~nSS 225 (294)
T COG0761 177 VAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLV-------------------------------IVVGSKNSS 225 (294)
T ss_pred HHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEE-------------------------------EEECCCCCc
Confidence 888887633 27777888888888888877652 122222333
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhh-cCcceeeCCCCcH
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGV-NDAPALKL-ADIGIAMGIAGTE 208 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~-A~igvamg~~~~~ 208 (514)
+-.++.+.-++.+.....|.+.. =|-+-|+. ..+||.-|.+.+|
T Consensus 226 Ns~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd 271 (294)
T COG0761 226 NSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPD 271 (294)
T ss_pred cHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCH
Confidence 44455555555555666665532 35556666 4488887844444
No 227
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.12 E-value=66 Score=31.01 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=41.8
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.|.-+||..-.+++++++. .+.+++.+|-|.. =..||...|..|.+-...+. ..-..||+++.
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIV 207 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEE
Confidence 3567888888999998874 5889999999874 23355555555544333333 23456888774
No 228
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.93 E-value=2.4e+02 Score=27.26 Aligned_cols=63 Identities=14% Similarity=0.255 Sum_probs=43.2
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcC-CcCCHH---hhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGD-GVNDAP---ALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGD-g~ND~~---ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.+.-+||..-.+++++++. .+.+++.+|- +.-=.| +|..+|..|.+-...++ ..-..||+++.
T Consensus 136 ~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 136 VMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVV 207 (284)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEE
Confidence 3678899999999998875 5789999999 444444 56677766665323222 23456888875
No 229
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.33 E-value=68 Score=31.17 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=41.3
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC---C-HHhhhhc----CcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN---D-APALKLA----DIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N---D-~~ml~~A----~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-|.-++|..-.+++++++. .+.+++.+|-|.. - ..||... +..|.+-++.+. ..-..||+++.
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 135 RFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 3566888888999998875 6889999999875 2 3344443 444544433333 23456888875
No 230
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.99 E-value=73 Score=30.94 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=41.7
Q ss_pred EEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 158 FSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
+.-++|..-.+++++++. .+.+++.+|-|.. =..||...|..|.+-++.+. ..-..||+++.
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVA 207 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 556888888999998864 5789999999864 23456555655554433332 23456888875
No 231
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.30 E-value=78 Score=30.54 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=40.7
Q ss_pred EEecChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHhhhh--cCcceeeCCCCcH---HHHhccccccc
Q 010234 158 FSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVND----APALKL--ADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 158 ~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~ND----~~ml~~--A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
+.-++|..-.+++++++. .+.+++.+|-|..= ..||.. .+..|.+-+..+. ..-..||+++.
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~ 209 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVA 209 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEE
Confidence 457788888999998875 47899999998752 234544 4555554433333 23455888774
No 232
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=47.09 E-value=13 Score=33.39 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=23.6
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKN 112 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~ 112 (514)
++-||+.+++++|.+.|...+++|+++..
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 56799999999999999999999998754
No 233
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.19 E-value=34 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=28.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC 118 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia 118 (514)
.-.+++.++++.++++|.+++.+|+.+.......+
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 91 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTLAREA 91 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhC
Confidence 34678999999999999999999998765544443
No 234
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.83 E-value=2.6e+02 Score=26.95 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=41.9
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-+.-++|..-.+++++++. .+.+++.+|-|.. =..||...|..|.+-+..++ ..-..||+++.
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEE
Confidence 3667888888999998865 5789999999853 23356556655554433332 22456788764
No 235
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.55 E-value=49 Score=27.22 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=56.4
Q ss_pred HHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcCC--c
Q 010234 25 EMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI--R 102 (514)
Q Consensus 25 ~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi--~ 102 (514)
-+...|++|+-.+-.. +.++. ...-.+.+-.++++-+......+.+++.++.|+++|. .
T Consensus 22 ~l~~~G~~vi~lG~~v-p~e~~------------------~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i 82 (122)
T cd02071 22 ALRDAGFEVIYTGLRQ-TPEEI------------------VEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDI 82 (122)
T ss_pred HHHHCCCEEEECCCCC-CHHHH------------------HHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCC
Confidence 4678899998877552 11110 0111245667788888888888999999999999976 3
Q ss_pred EEEECCCChHHHHHHHHHcCCcc
Q 010234 103 VMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 103 v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
.+++-|+.+..-....++.|++.
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~ 105 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAE 105 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCE
Confidence 46777777766666677889753
No 236
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.51 E-value=61 Score=27.44 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcCC--
Q 010234 24 HEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI-- 101 (514)
Q Consensus 24 ~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi-- 101 (514)
.-+...|++|+-++... +.++. ...-.+.+-.++|+-.....-.+..++.+++|+++|.
T Consensus 25 ~~lr~~G~eVi~LG~~v-p~e~i------------------~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~ 85 (137)
T PRK02261 25 RALTEAGFEVINLGVMT-SQEEF------------------IDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGD 85 (137)
T ss_pred HHHHHCCCEEEECCCCC-CHHHH------------------HHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCC
Confidence 45678999999998764 11110 0112246678899988888899999999999999955
Q ss_pred cEEEECCCC------hHHHHHHHHHcCCc
Q 010234 102 RVMVITGDN------KNTAEAICREIGVF 124 (514)
Q Consensus 102 ~v~i~TG~~------~~~a~~ia~~~gi~ 124 (514)
..+++-|.. +......++++|+.
T Consensus 86 ~~i~vGG~~~~~~~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 86 ILLYVGGNLVVGKHDFEEVEKKFKEMGFD 114 (137)
T ss_pred CeEEEECCCCCCccChHHHHHHHHHcCCC
Confidence 245666654 45566778888864
No 237
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.11 E-value=65 Score=31.11 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=41.1
Q ss_pred EEEecChhhHHHHHHHHh--hCCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLK--EDGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~--~~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.+.-+||..-.+++++++ ..+.+++.+|-|.. =..||...|..|.+-++.+. ..-..||+++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIs 207 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVS 207 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEE
Confidence 356778888889999885 56889999999872 23355555555544433332 23455787764
No 238
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.67 E-value=1.4e+02 Score=23.91 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhH
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHK 166 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k 166 (514)
+-..+.++.|++.+++++++.-+... +.. +++-|.. .+.|+....-.-........+..+.+-.+++.-
T Consensus 8 ~~~~~i~~~L~~~~~~vvvid~d~~~-~~~-~~~~~~~---------~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 8 RIGREIAEQLKEGGIDVVVIDRDPER-VEE-LREEGVE---------VIYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHH-HHH-HHHTTSE---------EEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEECCcHH-HHH-HHhcccc---------cccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 45678888899988889999887654 222 2333321 111111111111111222333445554555566
Q ss_pred HHHHHHHhh-C-CCEEEEEcCCcCCHHhhhhcCccee
Q 010234 167 QEIVRLLKE-D-GEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 167 ~~iv~~l~~-~-~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
..++...++ . ...+++.-+..++...|+.+|+...
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDPENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEE
Confidence 666666665 2 3578888888888888888876543
No 239
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=44.46 E-value=31 Score=28.40 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR 119 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~ 119 (514)
.-.+++.++++.++++|++++.+|+.+.....+.++
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad 93 (128)
T cd05014 58 GETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSD 93 (128)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCC
Confidence 357899999999999999999999987655555443
No 240
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=43.64 E-value=3.1e+02 Score=26.42 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=46.3
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 156 LLFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
..+.-|||..-.+++++++. .+.+++.+|=|.- =..||..++..|.+-+..+. ..-+.||+++.
T Consensus 133 ~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 133 PGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVV 205 (283)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEE
Confidence 34667899999999999988 7889999998752 24567778877777654442 33455787764
No 241
>COG4996 Predicted phosphatase [General function prediction only]
Probab=43.36 E-value=1.1e+02 Score=25.52 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=40.6
Q ss_pred ccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCccc
Q 010234 81 LRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEC 126 (514)
Q Consensus 81 ~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~ 126 (514)
.+-.+.++++++++.+++.|.-+..+|=.....|....+.+++...
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~y 83 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQY 83 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhh
Confidence 3345899999999999999999999999999999999999998653
No 242
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.80 E-value=57 Score=26.45 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCcEEEECC---CC-----hHHHHHHHHHcCCcccCc
Q 010234 90 HQAIEDCRAAGIRVMVITG---DN-----KNTAEAICREIGVFECNE 128 (514)
Q Consensus 90 ~~~I~~l~~~Gi~v~i~TG---~~-----~~~a~~ia~~~gi~~~~~ 128 (514)
.+-+++++++|++.+|.=- .. .......++++||.....
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~i 63 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHI 63 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE-
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEe
Confidence 4567788999999999852 21 112457889999965433
No 243
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=42.09 E-value=41 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC 118 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia 118 (514)
.-.+++.++++.++++|.+++.+|+.........+
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~a 92 (120)
T cd05710 58 GNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLA 92 (120)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhC
Confidence 35789999999999999999999998765544433
No 244
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=41.01 E-value=1.7e+02 Score=23.98 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec--Chhh
Q 010234 88 EVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA--EPRH 165 (514)
Q Consensus 88 ~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~p~~ 165 (514)
...++++.+.+++.-.++.+|.....+..++..+..... .. ....+.+.. ..........+..++... ...+
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~--~~--~~~~~~~~~--~~~~~~~~~~~~~i~iS~~g~~~~ 75 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGK--PV--VLLSDPHLQ--LMSAANLTPGDVVIAISFSGETKE 75 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHcCC--ce--EEecCHHHH--HHHHHcCCCCCEEEEEeCCCCCHH
Confidence 356778888888877777788878777777776643321 11 111111111 111111122222333322 3345
Q ss_pred HHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceee
Q 010234 166 KQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAM 202 (514)
Q Consensus 166 k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvam 202 (514)
..++++..+..+-.++.|.+..+ .++-+.+|..+-.
T Consensus 76 ~~~~~~~a~~~g~~iv~iT~~~~-~~l~~~~d~~i~~ 111 (139)
T cd05013 76 TVEAAEIAKERGAKVIAITDSAN-SPLAKLADIVLLV 111 (139)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCC-ChhHHhcCEEEEc
Confidence 56778888888888877766432 3444556655544
No 245
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=40.95 E-value=2.2e+02 Score=27.20 Aligned_cols=110 Identities=11% Similarity=0.011 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhH
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHK 166 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k 166 (514)
+...++++.+.+++.-.++-.|.+...|..++.++........ .. .+..............+..+....+...+
T Consensus 116 ~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~----~~--~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~ 189 (278)
T PRK11557 116 EKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAV----AE--RDMHALLATVQALSPDDLLLAISYSGERR 189 (278)
T ss_pred HHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEE----Ec--CChHHHHHHHHhCCCCCEEEEEcCCCCCH
Confidence 5556777888888887888888888888888877654332211 11 11111111122233344455554444443
Q ss_pred --HHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 167 --QEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 167 --~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
.++++..+..+-.|++|-|.. +.++-+.||+.+...
T Consensus 190 ~~~~~~~~ak~~ga~iI~IT~~~-~s~la~~ad~~l~~~ 227 (278)
T PRK11557 190 ELNLAADEALRVGAKVLAITGFT-PNALQQRASHCLYTI 227 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCC-CCchHHhCCEEEEeC
Confidence 677888888898999888764 444455677666443
No 246
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=40.88 E-value=2.5e+02 Score=27.98 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV 123 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi 123 (514)
++-.+.+++|+..++.|+++.++--|-..|.++.-.++++
T Consensus 96 ~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R~~~~~~~ 135 (388)
T COG1916 96 KPGSEMKAAIEAARELGAPVALIDRDIGVTLRRAWAKMPF 135 (388)
T ss_pred CChHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHhCCH
Confidence 5677889999999999999999998888888887776665
No 247
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.85 E-value=2.6e+02 Score=27.00 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=42.7
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC-C---HHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN-D---APALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N-D---~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.|.-+||..-.+++++++. .+.+++.+|-|.. - ..||...|..|.+-+..+. ..-..||+++.
T Consensus 137 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 137 LLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEE
Confidence 3667899999999998875 4889999999873 2 3356666666655433333 22456788774
No 248
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=40.25 E-value=75 Score=24.03 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=35.9
Q ss_pred ecccCCCChhHHHHHHHHHHcCCcEEE-ECCCChHHHHHHHHHcCCc
Q 010234 79 VGLRDPPRNEVHQAIEDCRAAGIRVMV-ITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 79 ~~~~~~l~~~~~~~I~~l~~~Gi~v~i-~TG~~~~~a~~ia~~~gi~ 124 (514)
+...+...+.+.+..+.|++.|+++.+ ..+++...-...|++.|..
T Consensus 7 i~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 7 IPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 334455677888999999999999988 5677777777788888864
No 249
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=39.40 E-value=24 Score=30.74 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCC
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGD 109 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~ 109 (514)
+.+++.++|++|.+.|++++|+|.-
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3567999999999999999999963
No 250
>PRK13938 phosphoheptose isomerase; Provisional
Probab=38.66 E-value=67 Score=29.12 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHH
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEA 116 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ 116 (514)
-++++.++++.++++|++++.+||.+......
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~ 156 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESGGQLAE 156 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 47899999999999999999999977644444
No 251
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.58 E-value=2.6e+02 Score=27.14 Aligned_cols=63 Identities=13% Similarity=0.085 Sum_probs=41.9
Q ss_pred EEEecChhhHHHHHHHHh--hCCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLK--EDGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~--~~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.+.-++|..-.+++++++ ..+.+++.+|-|.. =..||...|..|.+-+..+. ..-..||+++.
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVA 209 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 466788888888999876 45789999999864 23355556655555433332 22455788764
No 252
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=37.07 E-value=1.9e+02 Score=26.88 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=64.0
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
.+.+|+..++++-+.+|+++.+-|.+....-+.+....+- |+ +.+... -.-+..+.-+..-
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~-------------gd-l~~y~~-----gyfDt~iG~K~e~ 183 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDA-------------GD-LRKYIS-----GYFDTTIGLKVES 183 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCc-------------ch-HHHHhh-----hhhhccccceehh
Confidence 5789999999999999999999999876555444322210 00 000000 0001122222233
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcc
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIG 199 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~ig 199 (514)
..-.+|.+.++....+++..-|-.+-..+.+.||+-
T Consensus 184 ~sy~~I~~~Ig~s~~eiLfLTd~~~Ea~aa~~aGl~ 219 (254)
T KOG2630|consen 184 QSYKKIGHLIGKSPREILFLTDVPREAAAARKAGLQ 219 (254)
T ss_pred HHHHHHHHHhCCChhheEEeccChHHHHHHHhcccc
Confidence 444677788888999999999999999999999853
No 253
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=36.63 E-value=60 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHH
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAI 117 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~i 117 (514)
.++..++++.++++|++++.+|++........
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~ 104 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANSPLAKL 104 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCChhHHh
Confidence 47889999999999999999999876544443
No 254
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=36.57 E-value=52 Score=29.10 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR 119 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~ 119 (514)
.-.+++.++++.++++|++++.+|+.+.......+.
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad 118 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPESTLGKLAD 118 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCC
Confidence 457899999999999999999999988766666554
No 255
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.37 E-value=99 Score=25.23 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.2
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC 118 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia 118 (514)
...-.++..+.++.++++|.+++.+|+.........+
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 3446689999999999999999999988776655554
No 256
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=36.20 E-value=47 Score=23.13 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHcCCcEEEECCC
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGD 109 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~ 109 (514)
|+-++.++.|.++|++|-|.|-.
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~ 24 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYS 24 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HH
T ss_pred cHHHHHHHHHHHCCCeEEecCcH
Confidence 67789999999999999998753
No 257
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=35.93 E-value=4.8e+02 Score=27.88 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=29.3
Q ss_pred ceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc
Q 010234 155 GLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI 198 (514)
Q Consensus 155 ~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i 198 (514)
...+.-.++++-...++.++..|.++ .+||+.- ..+-+.+|.
T Consensus 133 i~~~~~~~~~e~~~~v~~lk~~G~~~-vvG~~~~-~~~A~~~g~ 174 (538)
T PRK15424 133 IEQRSYVTEEDARGQINELKANGIEA-VVGAGLI-TDLAEEAGM 174 (538)
T ss_pred eEEEEecCHHHHHHHHHHHHHCCCCE-EEcCchH-HHHHHHhCC
Confidence 45677778888899999999888655 4588654 444555553
No 258
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.75 E-value=4.1e+02 Score=25.64 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=43.2
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVND----APALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~ND----~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-+..++|..-.+++++++. .+.+++.+|-|..= ..||...|..|.+-++.+. ..-..||+++.
T Consensus 137 ~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 137 TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 4667899888899998865 57899999998752 3456666666666544333 23456888774
No 259
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.45 E-value=4.2e+02 Score=25.75 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=39.8
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC---C-HHhhhhc----CcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN---D-APALKLA----DIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N---D-~~ml~~A----~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-|.-++|..-.+++++++. .+.+++.+|-|.. - ..||... |..|.+-++.+. ..-..||+++.
T Consensus 135 ~~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIs 210 (293)
T PRK14185 135 CFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIA 210 (293)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEE
Confidence 3668899999999998875 5889999999864 2 3345444 344444322222 22345777763
No 260
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=35.24 E-value=49 Score=31.88 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=29.6
Q ss_pred ecChhhHHHHHHHHhhCCCEEEEEcCCc-CCHHhhhhc-CcceeeCCCCc
Q 010234 160 RAEPRHKQEIVRLLKEDGEVVAMTGDGV-NDAPALKLA-DIGIAMGIAGT 207 (514)
Q Consensus 160 ~~~p~~k~~iv~~l~~~~~~v~~iGDg~-ND~~ml~~A-~igvamg~~~~ 207 (514)
..+-.+-.++.+.-+..+..+..|.|-. =|-.+|+.+ .+||.-| +++
T Consensus 218 g~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaG-AST 266 (281)
T PF02401_consen 218 GKNSSNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAG-AST 266 (281)
T ss_dssp -TT-HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE--TTS
T ss_pred CCCCccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEcc-CCC
Confidence 3344566777787777777888887743 356778888 4899888 443
No 261
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=35.14 E-value=2.1e+02 Score=28.06 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=40.5
Q ss_pred cEEEEEecccCCCChhHHHHHHHHHHc----CCcEEEECCCC----hHHHHHHHHHcCCc
Q 010234 73 LTFVGLVGLRDPPRNEVHQAIEDCRAA----GIRVMVITGDN----KNTAEAICREIGVF 124 (514)
Q Consensus 73 l~~lG~~~~~~~l~~~~~~~I~~l~~~----Gi~v~i~TG~~----~~~a~~ia~~~gi~ 124 (514)
+.+=|++-.-.++-+++.++++.|.+. .|+++++|... ...|+.+...+|..
T Consensus 40 fDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 40 FDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE 99 (389)
T ss_pred EecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc
Confidence 445688888888999999999999999 89999999764 33455566666653
No 262
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=34.35 E-value=2.1e+02 Score=28.44 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=42.9
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC----CHHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 156 LLFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN----DAPALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N----D~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
..|.-++|..-.+++++.+. .+.+++.+|-|.. =..||...|.-|.+-+..+. ..-..||+++.
T Consensus 191 ~~~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 191 PLFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIA 263 (345)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEE
Confidence 34677888888999988865 4889999999864 23466666665555433222 23456888774
No 263
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=34.30 E-value=3e+02 Score=23.75 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
+...+.=++|++.|+++.+..|+.......+++++|+.
T Consensus 53 ~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~ 90 (165)
T PF00875_consen 53 ESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGAT 90 (165)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTES
T ss_pred HHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcC
Confidence 34444555677889999999999999999999999874
No 264
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=34.13 E-value=2.4e+02 Score=27.40 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=27.2
Q ss_pred CCCChhHHHHHHHHHHcC-CcEEEECCCChHHH
Q 010234 83 DPPRNEVHQAIEDCRAAG-IRVMVITGDNKNTA 114 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~G-i~v~i~TG~~~~~a 114 (514)
-.+-+..-+.|+.+++.| +++.++|....+.+
T Consensus 91 PTLy~~L~elI~~~k~~g~~~tflvTNgslpdv 123 (296)
T COG0731 91 PTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDV 123 (296)
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCChHHH
Confidence 347899999999999999 79999999887433
No 265
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.06 E-value=4.4e+02 Score=25.49 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=42.4
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC-C---HHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN-D---APALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N-D---~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
-+.-+||..-.+++++++. .+.+++.+|-|.. - ..||...|..|.+-+..+. ..-..||+++.
T Consensus 142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEE
Confidence 3667899999999998875 5789999999873 2 3356666666655433332 22355787763
No 266
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=33.31 E-value=74 Score=27.95 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEeeCC-CCccCCCCCCCCcccccccCCC------ccccccCCcEEEEEecccCC
Q 010234 12 DHKSRNLILDALHEMSTGALRCLGFAYKDEL-PDFETYDGNEDHPAHTLLLNPS------NYASMECGLTFVGLVGLRDP 84 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~l~~lG~~~~~~~ 84 (514)
+-.+++++.+...++...|.+....+++.=. .+.++.|.+...........++ .|-....|-..+|++.++.+
T Consensus 10 ~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~i~lRh~ 89 (174)
T COG3981 10 TLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGFINLRHQ 89 (174)
T ss_pred chhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEEEEeeee
Confidence 4556788999999999999998888887521 1222222211000000000011 12233347789999999987
Q ss_pred CChhH-------------------------HHHHHHHHHcCCcEEEECCCC
Q 010234 85 PRNEV-------------------------HQAIEDCRAAGIRVMVITGDN 110 (514)
Q Consensus 85 l~~~~-------------------------~~~I~~l~~~Gi~v~i~TG~~ 110 (514)
+.+.. +-+++++++.||+-+++|-|.
T Consensus 90 Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~ 140 (174)
T COG3981 90 LNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDK 140 (174)
T ss_pred cchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 76654 457888889999988888765
No 267
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=32.70 E-value=1.1e+02 Score=28.21 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=59.3
Q ss_pred ChhH-HHHHHHHHHcCCcEEEECCCChH-----HHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEE
Q 010234 86 RNEV-HQAIEDCRAAGIRVMVITGDNKN-----TAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFS 159 (514)
Q Consensus 86 ~~~~-~~~I~~l~~~Gi~v~i~TG~~~~-----~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (514)
.||. .+..+.++++|++.+|+.+.... ..+..+++.|+.-.. ...||
T Consensus 61 HPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~---------------------------P~~~C 113 (217)
T PF02593_consen 61 HPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEF---------------------------PKPFC 113 (217)
T ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeec---------------------------Ccccc
Confidence 4444 47777788899999999888877 777777777753211 12444
Q ss_pred ecCh---hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCccee
Q 010234 160 RAEP---RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIA 201 (514)
Q Consensus 160 ~~~p---~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igva 201 (514)
...+ ..-.+.++.++...-++..=+|..-|+.-++.|-+|-+
T Consensus 114 sL~~~~~p~i~~F~~~fGkP~~ei~v~~~~I~~V~VlR~aPCGsT 158 (217)
T PF02593_consen 114 SLEENGNPQIDEFAEYFGKPKVEIEVENGKIKDVKVLRSAPCGST 158 (217)
T ss_pred ccCCCCChhHHHHHHHhCCceEEEEecCCcEEEEEEEecCCCccH
Confidence 4443 34566777777766566555666677777877776653
No 268
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=32.39 E-value=60 Score=28.64 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred EEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH
Q 010234 76 VGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR 119 (514)
Q Consensus 76 lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~ 119 (514)
+-++.-...-.+++.++++.++++|.+++.+|+.........++
T Consensus 104 v~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD 147 (177)
T cd05006 104 VLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELAD 147 (177)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCC
No 269
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.29 E-value=4.7e+02 Score=25.28 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=26.6
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCcC
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVN 188 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~N 188 (514)
-|.-++|..-.+++++++. .+.+++.+|-|..
T Consensus 135 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~i 168 (286)
T PRK14184 135 GFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNI 168 (286)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcc
Confidence 3668899999999999875 4789999999864
No 270
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.28 E-value=4.8e+02 Score=25.37 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=44.0
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEEcCCc-CCH---HhhhhcCcceeeCCCC---cHHHHhcccccccC
Q 010234 156 LLFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGV-NDA---PALKLADIGIAMGIAG---TEVAKEASDMVLAD 220 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~-ND~---~ml~~A~igvamg~~~---~~~~k~~ad~v~~~ 220 (514)
..+.-++|..-.+++++.+. .+.+|+++|-+. -=. .+|..+|..|.+-++. .+.+...||+++.-
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 135 TALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAA 208 (296)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEe
Confidence 34677889888999998864 688999999544 333 3566778777665322 22334568888753
No 271
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.26 E-value=3.1e+02 Score=24.01 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh--
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR-- 164 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~-- 164 (514)
+...++++.+.+++.-+++-.|.+...|..++.++.-....... .... . .......+..+....+.+
T Consensus 18 ~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~----~~~~-~------~~~~~~~Dv~I~iS~sG~t~ 86 (179)
T TIGR03127 18 EELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYV----VGET-T------TPSIKKGDLLIAISGSGETE 86 (179)
T ss_pred HHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEE----eCCc-c------cCCCCCCCEEEEEeCCCCcH
Confidence 45677888888888666666788888888877776332211110 0000 0 011222334444444443
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
+-.++++..++.+..|+++-|..+ .++-+.||+.+.+.
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~-s~la~~ad~~l~~~ 124 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPE-STLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCC-CchHHhCCEEEEeC
Confidence 346788888888888888866544 56677788877665
No 272
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.16 E-value=4.8e+02 Score=25.28 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=43.8
Q ss_pred eEEEecChhhHHHHHHHHhh--CCCEEEEEcCCcCC----HHhhhhcCcceeeCCCCcH---HHHhccccccc
Q 010234 156 LLFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGVND----APALKLADIGIAMGIAGTE---VAKEASDMVLA 219 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~ND----~~ml~~A~igvamg~~~~~---~~k~~ad~v~~ 219 (514)
.-|.-++|..-.+++++++. .+.+++.+|-|..= ..||...|..|.+-++.+. ..-..||+++.
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVA 208 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEE
Confidence 34678899998899998864 57899999998642 3456666666665543333 22456888875
No 273
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.02 E-value=1.1e+02 Score=25.76 Aligned_cols=82 Identities=16% Similarity=0.094 Sum_probs=55.6
Q ss_pred HHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcCC-c-
Q 010234 25 EMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI-R- 102 (514)
Q Consensus 25 ~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi-~- 102 (514)
-|...|++|+-..... ++++. -..-.|.+-..+|+-++...-.+..++.+++|+++|. .
T Consensus 25 ~l~~~GfeVi~lg~~~-s~e~~------------------v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i 85 (132)
T TIGR00640 25 AYADLGFDVDVGPLFQ-TPEEI------------------ARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDI 85 (132)
T ss_pred HHHhCCcEEEECCCCC-CHHHH------------------HHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCC
Confidence 4677888888766442 11110 0122356778899999988888899999999999986 3
Q ss_pred EEEECCCChHHHHHHHHHcCCcc
Q 010234 103 VMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 103 v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
.+++-|-.+..-..-.+++|++.
T Consensus 86 ~vivGG~~~~~~~~~l~~~Gvd~ 108 (132)
T TIGR00640 86 LVVVGGVIPPQDFDELKEMGVAE 108 (132)
T ss_pred EEEEeCCCChHhHHHHHHCCCCE
Confidence 45565555555556678888854
No 274
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.89 E-value=68 Score=28.75 Aligned_cols=34 Identities=24% Similarity=0.516 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHH
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC 118 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia 118 (514)
-.+++.++++.++++|++++.+|+.........+
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~a 151 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKMKELC 151 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhC
Confidence 5799999999999999999999997655544433
No 275
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.16 E-value=1.3e+02 Score=27.16 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHH
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEA 116 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ 116 (514)
-.+++.++++.++++|++++.+||........
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 47999999999999999999999986544444
No 276
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=30.92 E-value=1.1e+02 Score=30.12 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHH
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTA 114 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a 114 (514)
|.+...+++|+++|-+..++|..+...+
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFV 270 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFV 270 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhh
Confidence 6778889999999999999999886554
No 277
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=30.83 E-value=1.2e+02 Score=34.35 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=56.1
Q ss_pred cCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEec
Q 010234 82 RDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRA 161 (514)
Q Consensus 82 ~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 161 (514)
.+.+..+-.|.++....+|.|++-+-+++..+. ...+...+..... +..+....-.++-..
T Consensus 645 p~tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~-~~~~~~~~~Rd~v------------------Es~l~FlGLiVmeNk 705 (1140)
T KOG0208|consen 645 PETVPADYQEVLKEYTHQGFRVIALASKELETS-TLQKAQKLSRDTV------------------ESNLEFLGLIVMENK 705 (1140)
T ss_pred cccCCccHHHHHHHHHhCCeEEEEEecCccCcc-hHHHHhhccHhhh------------------hccceeeEEEEeecc
Confidence 335677788999999999999999988876655 2222222211000 000000111233333
Q ss_pred ChhhHHHHHHHHhh-CCCEEEEEcCCc-------CCHHhhhhcCcce
Q 010234 162 EPRHKQEIVRLLKE-DGEVVAMTGDGV-------NDAPALKLADIGI 200 (514)
Q Consensus 162 ~p~~k~~iv~~l~~-~~~~v~~iGDg~-------ND~~ml~~A~igv 200 (514)
-.++-..+++.|+. +.+.|++.||+. -++.|++..+--+
T Consensus 706 LK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~ 752 (1140)
T KOG0208|consen 706 LKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVI 752 (1140)
T ss_pred cccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEE
Confidence 33444566666665 456778889985 3666666665433
No 278
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=30.67 E-value=3.3e+02 Score=26.93 Aligned_cols=85 Identities=19% Similarity=0.425 Sum_probs=63.4
Q ss_pred EecccCCCChhHHHHHHHHH-HcCCcEEEECCCC--hHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcC
Q 010234 78 LVGLRDPPRNEVHQAIEDCR-AAGIRVMVITGDN--KNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSG 154 (514)
Q Consensus 78 ~~~~~~~l~~~~~~~I~~l~-~~Gi~v~i~TG~~--~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
..+++|+-+-+...++.++- ++|+.+.+--.+- .+.++.+++.+|++.-. ...+
T Consensus 219 vtAMhDaTrGGla~aLnEmA~aSgvgi~I~ee~Ipv~~eVr~vce~lGiDPl~-----------------------~anE 275 (339)
T COG0309 219 VTAMHDATRGGLAGALNEMAEASGVGISIEEEKIPVREEVRGVCELLGLDPLE-----------------------LANE 275 (339)
T ss_pred hhhccCCchhHHHHHHHHHHHHcCCeEEEeeccccccHHHHHHHHHhCCCHHH-----------------------hhcC
Confidence 34589999999999998865 5577777776664 67889999999996521 1123
Q ss_pred ceEEEecChhhHHHHHHHHhhCC-CEEEEEcC
Q 010234 155 GLLFSRAEPRHKQEIVRLLKEDG-EVVAMTGD 185 (514)
Q Consensus 155 ~~i~~~~~p~~k~~iv~~l~~~~-~~v~~iGD 185 (514)
..+..-.+|++-.++++.|+..+ .+...||-
T Consensus 276 G~lv~~V~~~~a~~~l~~L~~~~~~~A~iIGe 307 (339)
T COG0309 276 GKLVIAVPPEHAEEVLEALRSHGLKDAAIIGE 307 (339)
T ss_pred ceEEEEECHHHHHHHHHHHHhcCCccceeEEE
Confidence 56777888898899999999888 56666663
No 279
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=30.47 E-value=1.4e+02 Score=28.67 Aligned_cols=53 Identities=19% Similarity=0.463 Sum_probs=40.2
Q ss_pred CCcEEEEEecccC---CCChhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCC
Q 010234 71 CGLTFVGLVGLRD---PPRNEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGV 123 (514)
Q Consensus 71 ~~l~~lG~~~~~~---~l~~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi 123 (514)
-++..+|+++... +-..+..+.++.+++.|+++++. +.-+...++.++++.|.
T Consensus 188 ~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~ 244 (282)
T cd01017 188 YGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGA 244 (282)
T ss_pred CCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCC
Confidence 4677788776532 33455678888899999998888 55567888999999986
No 280
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.44 E-value=65 Score=24.51 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=25.6
Q ss_pred EecccCCC-ChhHHHHHHHHHHcCCcEEEECCCC
Q 010234 78 LVGLRDPP-RNEVHQAIEDCRAAGIRVMVITGDN 110 (514)
Q Consensus 78 ~~~~~~~l-~~~~~~~I~~l~~~Gi~v~i~TG~~ 110 (514)
.++++-+- .+...+.++.|+++|+++...|.+.
T Consensus 43 ~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 43 FVGVSVANGAEELAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCCH
Confidence 34555555 6788999999999999998877654
No 281
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.84 E-value=1e+02 Score=22.91 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.8
Q ss_pred ChhHHHHHHHHHHcCCcEEEEC
Q 010234 86 RNEVHQAIEDCRAAGIRVMVIT 107 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~T 107 (514)
++++.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 6889999999999999999998
No 282
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=29.70 E-value=34 Score=31.46 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=30.0
Q ss_pred hhHHHHHHHHhhC-CCEEEEEcC----CcCCHHhhhhcC-cceeeCCCCcHH
Q 010234 164 RHKQEIVRLLKED-GEVVAMTGD----GVNDAPALKLAD-IGIAMGIAGTEV 209 (514)
Q Consensus 164 ~~k~~iv~~l~~~-~~~v~~iGD----g~ND~~ml~~A~-igvamg~~~~~~ 209 (514)
-+|.-.++++... .+++..||| |-||.|.+...+ +|+++. +..|-
T Consensus 161 wDKty~Lr~l~~~~~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~-~p~DT 211 (220)
T PF03332_consen 161 WDKTYCLRHLEDEGFDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVT-SPEDT 211 (220)
T ss_dssp -SGGGGGGGTTTTT-SEEEEEESS-STTSTTHHHHHSTTSEEEE-S-SHHHH
T ss_pred ccHHHHHHHHHhcccceEEEEehhccCCCCCceeeecCCccEEEeC-CHHHH
Confidence 3555555555443 578999999 679999998876 588886 44443
No 283
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.64 E-value=1.5e+02 Score=28.67 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred CCcEEEEEecccCC---CChhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCCc
Q 010234 71 CGLTFVGLVGLRDP---PRNEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGVF 124 (514)
Q Consensus 71 ~~l~~lG~~~~~~~---l~~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi~ 124 (514)
-++..+|+++.... -..+..+.++.+++.|+++++. .+-+...+..++++.|..
T Consensus 194 yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 194 YGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred cCCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 46777777765333 3345577888899999998876 555778899999999974
No 284
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=29.63 E-value=1.1e+02 Score=23.33 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=35.1
Q ss_pred EecccC---CCChhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCCc
Q 010234 78 LVGLRD---PPRNEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGVF 124 (514)
Q Consensus 78 ~~~~~~---~l~~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi~ 124 (514)
++.+.+ ...+-+.+..+.|+++|+++.+- ++++...-.+-|...|+.
T Consensus 4 Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 4 IIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 444444 55677888999999999998888 555666677778888874
No 285
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=29.51 E-value=54 Score=32.29 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=33.2
Q ss_pred eEEEecChhhHHHHHHHHh-------------hCCCEEEEEcCCc-CCHHhhhhcCc-ceeeC
Q 010234 156 LLFSRAEPRHKQEIVRLLK-------------EDGEVVAMTGDGV-NDAPALKLADI-GIAMG 203 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~-------------~~~~~v~~iGDg~-ND~~ml~~A~i-gvamg 203 (514)
..+.+++|.--..+.+.++ ...++++||||.. .|+.+-+.+|+ ++-+.
T Consensus 229 ~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~ 291 (321)
T TIGR01456 229 YTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVK 291 (321)
T ss_pred EEcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEec
Confidence 4556777765555555552 1236999999997 99999999995 34444
No 286
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=29.47 E-value=94 Score=31.82 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCCChhHHHHHHHHHHcCCcEE----EECC--CChHHHHHHHHHc
Q 010234 83 DPPRNEVHQAIEDCRAAGIRVM----VITG--DNKNTAEAICREI 121 (514)
Q Consensus 83 ~~l~~~~~~~I~~l~~~Gi~v~----i~TG--~~~~~a~~ia~~~ 121 (514)
.++.+++.+++++|+++||.+. ++-| |+..+...+.+++
T Consensus 228 ~Eit~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L 272 (417)
T TIGR03820 228 REITASSKKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHKL 272 (417)
T ss_pred HhChHHHHHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHHH
Confidence 3478999999999999999754 4444 4566666665554
No 287
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.55 E-value=34 Score=31.06 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=40.9
Q ss_pred cCCcEEEEEecccCCCChhHHHHHHHHHHcCC--cE-EEECCCChHHHHHHHHHcCCcc
Q 010234 70 ECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI--RV-MVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 70 e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi--~v-~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
+.+-.++|+-.....-.+..++.++.+++++. ++ +++-|.... ..+++.+|-+.
T Consensus 131 ~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~--~~~~~~~GaD~ 187 (201)
T cd02070 131 EHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN--QEFADEIGADG 187 (201)
T ss_pred HcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC--HHHHHHcCCcE
Confidence 45678899988877778999999999999987 55 566665543 35788888653
No 288
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=28.33 E-value=80 Score=27.91 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR 119 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~ 119 (514)
.-.+++.++++.++++|++++.+|+.........+.
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad 121 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLAD 121 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCC
Confidence 357889999999999999999999987665555443
No 289
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=28.14 E-value=5.2e+02 Score=28.35 Aligned_cols=155 Identities=8% Similarity=0.107 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccc-cCCCccccccCCcEEEEEecccCCCChhHHHHHHHH
Q 010234 18 LILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLL-LNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDC 96 (514)
Q Consensus 18 ~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l 96 (514)
+..+...+++.+|+.++.++.+.=++-.--.- +-+..... ...++.+.++.+ .=+++++=.-...++..+.++.|
T Consensus 101 k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g---~~~~~~~vv~~~~~~~~~~~~-~~~~~~~QTT~~~~~~~~~~~~l 176 (647)
T PRK00087 101 NIQKLAKKYYEEGYQIVIVGDKNHPEVIGING---WCNNSAIIVEDGEEAEKLPFD-KKICVVSQTTEKQENFEKVLKEL 176 (647)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCCeeeeecc---ccCCCEEEECCHHHHhhCCCC-CCEEEEEcCCCcHHHHHHHHHHH
Confidence 35677889999999999999875221100000 00000000 111111121111 22555554444556667777777
Q ss_pred HHcCCc------EEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhHHHHH
Q 010234 97 RAAGIR------VMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHKQEIV 170 (514)
Q Consensus 97 ~~~Gi~------v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k~~iv 170 (514)
+++.-. ++-+|-+....+..+|+++... .+....+-.+-.++.
T Consensus 177 ~~~~~~~~~~~tiC~at~~Rq~a~~~la~~~d~~-------------------------------~vvGg~~SsNt~~L~ 225 (647)
T PRK00087 177 KKKGKEVKVFNTICNATEVRQEAAEKLAKKVDVM-------------------------------IVVGGKNSSNTTKLY 225 (647)
T ss_pred HHhCCCcccCCCcchhhhhHHHHHHHHHhhCCEE-------------------------------EEECCCCCccHHHHH
Confidence 765433 2334444455555555544321 122222223334455
Q ss_pred HHHhhCCCEEEEEcCCc-CCHHhhhhcC-cceeeCCCCc
Q 010234 171 RLLKEDGEVVAMTGDGV-NDAPALKLAD-IGIAMGIAGT 207 (514)
Q Consensus 171 ~~l~~~~~~v~~iGDg~-ND~~ml~~A~-igvamg~~~~ 207 (514)
+.-+..+..+..|-+.. =|..+|+.++ +||+-|.+.+
T Consensus 226 ~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitagaStP 264 (647)
T PRK00087 226 EICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGASTP 264 (647)
T ss_pred HHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEeccCCC
Confidence 55555556677775532 3556788665 8998883333
No 290
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.07 E-value=1.6e+02 Score=28.32 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=39.5
Q ss_pred CCcEEEEEecccC--CCC-hhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCC
Q 010234 71 CGLTFVGLVGLRD--PPR-NEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGV 123 (514)
Q Consensus 71 ~~l~~lG~~~~~~--~l~-~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi 123 (514)
-++..+++++... +++ .+..+.++.+++.|+++++. +.-+...+..++++.|.
T Consensus 196 ~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~ 252 (286)
T cd01019 196 YGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGA 252 (286)
T ss_pred cCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCc
Confidence 3566677776543 333 44567888899999999888 55578899999999986
No 291
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=27.96 E-value=83 Score=27.11 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=0.0
Q ss_pred EEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHH
Q 010234 76 VGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICR 119 (514)
Q Consensus 76 lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~ 119 (514)
+-++.-...-.+++.++++.++++|++++.+|+.+.......+.
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad 125 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLAD 125 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCC
No 292
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=27.83 E-value=20 Score=33.88 Aligned_cols=6 Identities=50% Similarity=1.292 Sum_probs=0.0
Q ss_pred hHHHHH
Q 010234 473 EWLLVL 478 (514)
Q Consensus 473 ~w~~~l 478 (514)
+|++.+
T Consensus 171 ~WL~LF 176 (381)
T PF05297_consen 171 YWLLLF 176 (381)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 466544
No 293
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.80 E-value=5.3e+02 Score=24.64 Aligned_cols=110 Identities=9% Similarity=0.031 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh--
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR-- 164 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~-- 164 (514)
+...++++.+.+++.-.++-.|.+...|..+...+...+.... ...+... ...........+..+....++.
T Consensus 123 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~----~~~d~~~--~~~~~~~~~~~Dv~i~iS~sg~t~ 196 (285)
T PRK15482 123 ARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVA----CEADTHV--QATVSQALKKGDVQIAISYSGSKK 196 (285)
T ss_pred HHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeE----EeccHhH--HHHHHhcCCCCCEEEEEeCCCCCH
Confidence 4456777788888887888888888888888877643322111 1111111 0111112223334444444433
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
+-.++++..+..+..|++|-|..+ .++-+.||+.+.+.
T Consensus 197 ~~~~~~~~a~~~g~~iI~IT~~~~-s~la~~ad~~l~~~ 234 (285)
T PRK15482 197 EIVLCAEAARKQGATVIAITSLAD-SPLRRLAHFTLDTV 234 (285)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-CchHHhCCEEEEcC
Confidence 346778888888889999887644 44456666666543
No 294
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=27.73 E-value=1.7e+02 Score=29.04 Aligned_cols=73 Identities=16% Similarity=0.271 Sum_probs=47.8
Q ss_pred HHHHHHHHH---HcCCcEEEECCCCh-HHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChh
Q 010234 89 VHQAIEDCR---AAGIRVMVITGDNK-NTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPR 164 (514)
Q Consensus 89 ~~~~I~~l~---~~Gi~v~i~TG~~~-~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ 164 (514)
+-..+.+|. +....|+-+|..|. .....-|+.+|+.. ..+....+|.
T Consensus 60 A~n~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a-----------------------------~IvMP~~tp~ 110 (347)
T COG1171 60 AYNKLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKA-----------------------------TIVMPETTPK 110 (347)
T ss_pred HHHHHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCE-----------------------------EEEecCCCcH
Confidence 444444443 12333666665554 44445577788854 4567788999
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHhh
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGVNDAPAL 193 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~ND~~ml 193 (514)
+|..-++.++ .+|+..||...|....
T Consensus 111 ~Kv~a~r~~G---aeVil~g~~~dda~~~ 136 (347)
T COG1171 111 IKVDATRGYG---AEVILHGDNFDDAYAA 136 (347)
T ss_pred HHHHHHHhcC---CEEEEECCCHHHHHHH
Confidence 9977666665 5899999999887643
No 295
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=27.54 E-value=3.4e+02 Score=30.42 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=30.4
Q ss_pred cCCcEEEEEecccCCC---------ChhHHHHHHHHHHc---CCcEEEECCCChHHHHHHH
Q 010234 70 ECGLTFVGLVGLRDPP---------RNEVHQAIEDCRAA---GIRVMVITGDNKNTAEAIC 118 (514)
Q Consensus 70 e~~l~~lG~~~~~~~l---------~~~~~~~I~~l~~~---Gi~v~i~TG~~~~~a~~ia 118 (514)
+.+|.+-|+-++.... ..++..+|..++.. .-+ +.||+.+.|.--+
T Consensus 492 ~d~lvv~Gvag~~~~~~~~~~~s~~p~~t~~vlAscHsLv~le~~---lVGDPlEKA~l~~ 549 (1160)
T KOG0209|consen 492 EDDLVVEGVAGLSADEGALTPASKAPNETVLVLASCHSLVLLEDK---LVGDPLEKATLEA 549 (1160)
T ss_pred cccEEEEecccccCCcccccchhhCCchHHHHHHHHHHHHHhcCc---ccCChHHHHHHHh
Confidence 4678888888855433 55677777777643 111 7899988776544
No 296
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=27.53 E-value=5.3e+02 Score=24.31 Aligned_cols=100 Identities=10% Similarity=0.018 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCeEEEEEEeeCCCCc--cCCCCCCCC-cccccccCCC------c--------cccccCCcEEEEEecccC
Q 010234 21 DALHEMSTGALRCLGFAYKDELPDF--ETYDGNEDH-PAHTLLLNPS------N--------YASMECGLTFVGLVGLRD 83 (514)
Q Consensus 21 ~~~~~~~~~G~r~l~~a~~~l~~~~--~~~~~~~~~-~~~~~~~~~~------~--------~~~~e~~l~~lG~~~~~~ 83 (514)
...+.....|-.++-+|.|..+... .....+... .....+.|.. + ++-...|++=|=+++=.+
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~ 103 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDK 103 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 3445566789999999999986311 111111011 0011111111 1 344456777777888778
Q ss_pred CCChhHHHHHHHHHHc---CCcEEEECCCChHHHHHHHHH
Q 010234 84 PPRNEVHQAIEDCRAA---GIRVMVITGDNKNTAEAICRE 120 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~---Gi~v~i~TG~~~~~a~~ia~~ 120 (514)
.+.|+..++++++++. |..++-.+.+++..++++++-
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA 143 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc
Confidence 8999999999999988 999996777788888888764
No 297
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=27.19 E-value=1.1e+02 Score=25.85 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=35.5
Q ss_pred cccCCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECC
Q 010234 68 SMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITG 108 (514)
Q Consensus 68 ~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG 108 (514)
++.++..-+.++|+.+++...+-.+.+.|+++|++++-+--
T Consensus 11 ~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 11 EILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred HHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence 34456677999999999999999999999999999998865
No 298
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.95 E-value=2.1e+02 Score=24.16 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcCC--
Q 010234 24 HEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI-- 101 (514)
Q Consensus 24 ~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi-- 101 (514)
..+...|++|+-.+...-.+ +. -..-.|.+-.++|+-++--.--+..++++++|+++|.
T Consensus 23 ~~l~~~GfeVi~LG~~v~~e-~~------------------v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 23 HAFTNAGFNVVNLGVLSPQE-EF------------------IKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred HHHHHCCCEEEECCCCCCHH-HH------------------HHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCC
Confidence 34677899999888664211 10 0112346778899888888888889999999999987
Q ss_pred cEEEECCCC---hHH---HHHHHHHcCCc
Q 010234 102 RVMVITGDN---KNT---AEAICREIGVF 124 (514)
Q Consensus 102 ~v~i~TG~~---~~~---a~~ia~~~gi~ 124 (514)
..+++-|-. ... ...-++++|+.
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 456677752 111 23457888874
No 299
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=26.63 E-value=70 Score=27.50 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCC
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV 123 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi 123 (514)
+||++.+.++.+.+ .+++++.|......|..+.+.+.-
T Consensus 37 ~RP~l~~FL~~l~~-~~ev~i~T~~~~~ya~~v~~~ldp 74 (159)
T PF03031_consen 37 LRPGLDEFLEELSK-HYEVVIWTSASEEYAEPVLDALDP 74 (159)
T ss_dssp E-TTHHHHHHHHHH-HCEEEEE-SS-HHHHHHHHHHHTT
T ss_pred eCchHHHHHHHHHH-hceEEEEEeehhhhhhHHHHhhhh
Confidence 59999999999955 499999999999999999998873
No 300
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=26.56 E-value=56 Score=32.40 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=19.9
Q ss_pred EEEEecccCCCChhHHHHHHHHHHcCCcEEEE
Q 010234 75 FVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVI 106 (514)
Q Consensus 75 ~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~ 106 (514)
.++..+-.+++.+.+.++++.|+++|+.+..-
T Consensus 225 ~vsh~nh~~Ei~~~~~~ai~~L~~aGi~v~~q 256 (331)
T TIGR00238 225 LVTHINHCNEITEEFAEAMKKLRTVNVTLLNQ 256 (331)
T ss_pred EEccCCChHhCCHHHHHHHHHHHHcCCEEEee
Confidence 33333333446777888888888888765443
No 301
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.51 E-value=1.5e+02 Score=21.99 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=32.2
Q ss_pred cccCCCChhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCC
Q 010234 80 GLRDPPRNEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGV 123 (514)
Q Consensus 80 ~~~~~l~~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi 123 (514)
...+...+.+.+..++|+++|+++.+. .+++.......|+..|+
T Consensus 8 ~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~ 52 (91)
T cd00859 8 PLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGA 52 (91)
T ss_pred EcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCC
Confidence 344445567888889999999998874 44566777777777775
No 302
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=26.25 E-value=2.3e+02 Score=22.86 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=36.1
Q ss_pred cccccc-CCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECC
Q 010234 65 NYASME-CGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITG 108 (514)
Q Consensus 65 ~~~~~e-~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG 108 (514)
.++..+ .+.+++|++.=..=+.++...-+++|++.|+.++.++.
T Consensus 29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcC
Confidence 344555 36999999999887789999999999999999887754
No 303
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=26.11 E-value=1.1e+02 Score=28.55 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 90 HQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 90 ~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
.|.+.++-.+||++++..+.+-..+..+|++.|+.
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giT 216 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNIT 216 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCE
Confidence 46778888999999999999999999999999973
No 304
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=26.09 E-value=1.1e+02 Score=27.75 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=42.6
Q ss_pred cCCcEEEEEecccCCCChhHHHHHHHHHHcCCc---EEEECCCChHHHHHHHHHcCCcc
Q 010234 70 ECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIR---VMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 70 e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~---v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
+.+-.++|+-....+-.+..++.++.++++|.+ .+++-|+... ..+++++|-+.
T Consensus 133 ~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~--~~~~~~~gad~ 189 (197)
T TIGR02370 133 KEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT--QDWADKIGADV 189 (197)
T ss_pred HcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC--HHHHHHhCCcE
Confidence 466788999988888899999999999999874 5677776652 46788888654
No 305
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.08 E-value=1.8e+02 Score=26.31 Aligned_cols=33 Identities=12% Similarity=0.321 Sum_probs=27.9
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHH
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAI 117 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~i 117 (514)
-.+++.++++.++++|.+++.+||.+......+
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l 153 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGL 153 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhc
Confidence 368899999999999999999999876555544
No 306
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.06 E-value=2.2e+02 Score=27.10 Aligned_cols=53 Identities=30% Similarity=0.488 Sum_probs=39.0
Q ss_pred CCcEEEEEecccCCC-ChhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCC
Q 010234 71 CGLTFVGLVGLRDPP-RNEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGV 123 (514)
Q Consensus 71 ~~l~~lG~~~~~~~l-~~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi 123 (514)
-++..+|+..-+.++ ..+..+.++.+++.|+++++. ++-+...+..++++.|+
T Consensus 187 ygl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~ 241 (266)
T cd01018 187 YGLTQIPIEEEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGA 241 (266)
T ss_pred cCCEEEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCC
Confidence 456666654333334 347788889999999999887 55567788899999987
No 307
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=25.87 E-value=57 Score=29.75 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=60.0
Q ss_pred eeeCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCC---CccccccCCcEEEEEecccCC
Q 010234 8 VVPLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNP---SNYASMECGLTFVGLVGLRDP 84 (514)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~l~~lG~~~~~~~ 84 (514)
..|++++.-.+..++++.++.+-.+-.+-....++.|.|-.- ...+.+. +.+.++|++ +|++-.
T Consensus 15 l~~~~~~~a~~vi~~i~~~q~~~~~~~g~~fv~~sDEfYl~A-------g~p~P~~~~Y~~fpQlenG---VGm~r~--- 81 (204)
T PF04459_consen 15 LRPFTPEEAREVIDQIESWQREFRKEYGTRFVYLSDEFYLLA-------GRPLPDAEFYEDFPQLENG---VGMVRL--- 81 (204)
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEechHHHHHc-------CCCCCChhhcCCCcccCCC---eeEhHH---
Confidence 457888888888888888877665555422222222221100 0111111 234455554 455532
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCC-hHHHHHHHHHc
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDN-KNTAEAICREI 121 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~-~~~a~~ia~~~ 121 (514)
..++..++++++.....++.++||.. ....+.+++++
T Consensus 82 f~~e~~~~l~~l~~~~~~v~ivTG~la~~~l~~~~~~l 119 (204)
T PF04459_consen 82 FLDEWEEALRKLPKKPRRVTIVTGVLAYPFLKPLVEKL 119 (204)
T ss_pred HHHHHHHHHhhcCCCCeeEEEEeeHHHHHHHHHHHHHH
Confidence 35677778777777889999999987 44566677777
No 308
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.85 E-value=5.3e+02 Score=23.81 Aligned_cols=46 Identities=9% Similarity=0.292 Sum_probs=31.3
Q ss_pred EecccCCCChhHHHHHHHHHHcCCcEEE--ECCCChHHHHHHHHHcCC
Q 010234 78 LVGLRDPPRNEVHQAIEDCRAAGIRVMV--ITGDNKNTAEAICREIGV 123 (514)
Q Consensus 78 ~~~~~~~l~~~~~~~I~~l~~~Gi~v~i--~TG~~~~~a~~ia~~~gi 123 (514)
.+.++-+..+...++|+..|+.|++..+ .-+-+......+..++.+
T Consensus 87 ~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~ 134 (220)
T COG0036 87 IITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL 134 (220)
T ss_pred EEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE
Confidence 4555656777888888888888887444 355566666677776654
No 309
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.81 E-value=2.7e+02 Score=28.20 Aligned_cols=160 Identities=14% Similarity=0.217 Sum_probs=81.7
Q ss_pred CChhHHHHHHHHHHcCCcEEEE--CCCChHHHHHHHHHcCCc---ccCcccee-cccChHHHhhhhHHHHHHhhcCceEE
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVI--TGDNKNTAEAICREIGVF---ECNEDISL-KSLTGKEFMEMHDKKAHLRQSGGLLF 158 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~--TG~~~~~a~~ia~~~gi~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (514)
+-.=+.+.+++.++.+..++|+ |||+...+.-+-+-..+. .++..+.. ....|...............-..++.
T Consensus 168 pv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIl 247 (483)
T KOG0780|consen 168 PVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVIL 247 (483)
T ss_pred hHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEE
Confidence 4455678889999999998887 888876665554443332 12222111 11112211111111111112234555
Q ss_pred EecChhhH-HHHHHHHhhCCCEEEEEcCC--cCCHHhhhhcC-cceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhH
Q 010234 159 SRAEPRHK-QEIVRLLKEDGEVVAMTGDG--VNDAPALKLAD-IGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGR 234 (514)
Q Consensus 159 ~~~~p~~k-~~iv~~l~~~~~~v~~iGDg--~ND~~ml~~A~-igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr 234 (514)
.+.+-..| .-.+...-..+..+..||-| .+|++-|..-- +|=-.|....+-..+...-+. .++...+.+-|++|+
T Consensus 248 TKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~-~~d~~el~~kl~~gk 326 (483)
T KOG0780|consen 248 TKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG-KDDAKELVEKLKQGK 326 (483)
T ss_pred EecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHh-hhhHHHHHHHHHhCC
Confidence 55554444 11222222334557676655 57988776432 343333223333333333333 467778888899999
Q ss_pred hHHHHHHHHHH
Q 010234 235 SIYNNMKAFIR 245 (514)
Q Consensus 235 ~~~~~i~~~~~ 245 (514)
-.++-+.+-++
T Consensus 327 Ftlrd~y~Qfq 337 (483)
T KOG0780|consen 327 FTLRDFYDQFQ 337 (483)
T ss_pred ccHHHHHHHHH
Confidence 87776655444
No 310
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=25.81 E-value=94 Score=29.08 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcc
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
+-..+.|++|+++|+.|+-++.|....-...-+++|+..
T Consensus 196 ~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~~ 234 (236)
T PF12017_consen 196 DILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGISE 234 (236)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCCC
Confidence 445788999999999999999999999999999999854
No 311
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=25.73 E-value=4e+02 Score=25.70 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.5
Q ss_pred HHHHHHHhhCCCEEEEEcCCcC
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVN 188 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~N 188 (514)
+..++.+.+.+..++.+||...
T Consensus 103 ~~~v~~~~~~Gy~iiiiG~~~H 124 (280)
T TIGR00216 103 HNAVKKYAKEGYHVILIGKKNH 124 (280)
T ss_pred HHHHHHHHhCCCEEEEEeCCCC
Confidence 6678888889999999999543
No 312
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.55 E-value=1.7e+02 Score=24.52 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=54.7
Q ss_pred HHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHHcCC-cE
Q 010234 25 EMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGI-RV 103 (514)
Q Consensus 25 ~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi-~v 103 (514)
.|...|+.|+=.+...-.+ +. -..-.|.+-.++|+-++--.--+..+++++.|+++|+ .+
T Consensus 22 ~L~~~GfeVidLG~~v~~e-~~------------------v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v 82 (128)
T cd02072 22 AFTEAGFNVVNLGVLSPQE-EF------------------IDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDI 82 (128)
T ss_pred HHHHCCCEEEECCCCCCHH-HH------------------HHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCC
Confidence 4557899998877654111 10 0123356778899999988888999999999999997 55
Q ss_pred -EEECCCCh------HHHHHHHHHcCCc
Q 010234 104 -MVITGDNK------NTAEAICREIGVF 124 (514)
Q Consensus 104 -~i~TG~~~------~~a~~ia~~~gi~ 124 (514)
+++-|-.. .....-++++|+.
T Consensus 83 ~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 83 LLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred eEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 55555422 2334567788874
No 313
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=25.41 E-value=1.2e+02 Score=28.84 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 90 HQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 90 ~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
.|.++++-.+||++++.-+-+...|..+|++.|+.
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giT 245 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLT 245 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCE
Confidence 46778888899999999998888999999998873
No 314
>PF14163 SieB: Superinfection exclusion protein B
Probab=25.30 E-value=49 Score=28.50 Aligned_cols=24 Identities=21% Similarity=0.449 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 010234 473 EWLLVLAIAFPVVLIDEVLKFVGR 496 (514)
Q Consensus 473 ~w~~~l~~~~~~~l~~e~~K~~~r 496 (514)
.|....++..+.+++..+......
T Consensus 34 ~~i~~~fl~s~s~li~~~~~~~~~ 57 (151)
T PF14163_consen 34 PWIGLIFLFSVSYLIAQLLSFIYK 57 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433333344444444444333
No 315
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.15 E-value=6e+02 Score=27.06 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcc
Q 010234 85 PRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 85 l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
-.+++.+.|+++++.|+++++ |+. .+...|++.|+..
T Consensus 130 ~~~e~~~~~~~l~~~G~~~vi--G~~--~~~~~A~~~gl~~ 166 (526)
T TIGR02329 130 TEEDARSCVNDLRARGIGAVV--GAG--LITDLAEQAGLHG 166 (526)
T ss_pred CHHHHHHHHHHHHHCCCCEEE--CCh--HHHHHHHHcCCce
Confidence 357889999999999999999 443 5678899999853
No 316
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=25.10 E-value=3.2e+02 Score=27.66 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHcC--CcEEEECCCChHHHHHH-HHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 87 NEVHQAIEDCRAAG--IRVMVITGDNKNTAEAI-CREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 87 ~~~~~~I~~l~~~G--i~v~i~TG~~~~~a~~i-a~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
.++..++.++-+.+ -.|+-+|+.+...+..+ |+++|+.. .++....+|
T Consensus 99 RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~Lgipa-----------------------------TIVmP~~tp 149 (457)
T KOG1250|consen 99 RGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPA-----------------------------TIVMPVATP 149 (457)
T ss_pred hhHHHHHHHHHHhhhcCceEEecCccHHHHHHHHHHhcCCce-----------------------------EEEecCCCh
Confidence 46778888887665 35777788877666655 68889854 456667777
Q ss_pred hhHHHHHHHHhhCCCEEEEEcCCcC
Q 010234 164 RHKQEIVRLLKEDGEVVAMTGDGVN 188 (514)
Q Consensus 164 ~~k~~iv~~l~~~~~~v~~iGDg~N 188 (514)
..| ++.++..+.+|+..|+..-
T Consensus 150 ~~k---iq~~~nlGA~Vil~G~~~d 171 (457)
T KOG1250|consen 150 LMK---IQRCRNLGATVILSGEDWD 171 (457)
T ss_pred HHH---HHHHhccCCEEEEecccHH
Confidence 766 5566667788999888754
No 317
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.91 E-value=2.5e+02 Score=19.61 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHH
Q 010234 14 KSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAI 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I 93 (514)
+.+..+.+..+.++..|..+..+.+..-... ..+-...-.+.++-.-.+...+.+
T Consensus 7 d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~-------------------------~~~~~~~~~i~v~~~~~~~l~~l~ 61 (73)
T cd04886 7 DRPGQLAKLLAVIAEAGANIIEVSHDRAFKT-------------------------LPLGEVEVELTLETRGAEHIEEII 61 (73)
T ss_pred CCCChHHHHHHHHHHcCCCEEEEEEEeccCC-------------------------CCCceEEEEEEEEeCCHHHHHHHH
Confidence 3445677888889999999988876641100 001112222334434456778999
Q ss_pred HHHHHcCCcEE
Q 010234 94 EDCRAAGIRVM 104 (514)
Q Consensus 94 ~~l~~~Gi~v~ 104 (514)
+.|++.|+++.
T Consensus 62 ~~l~~~g~~~~ 72 (73)
T cd04886 62 AALREAGYDVR 72 (73)
T ss_pred HHHHHcCCEEe
Confidence 99999998864
No 318
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=24.74 E-value=3.1e+02 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=14.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Q 010234 469 LSFNEWLLVLAIAFPVVLIDEVLKFV 494 (514)
Q Consensus 469 l~~~~w~~~l~~~~~~~l~~e~~K~~ 494 (514)
.++..|.+.++..++.+...-+--++
T Consensus 41 F~Pr~yAi~lP~~lll~~~~~vg~f~ 66 (78)
T PF07297_consen 41 FPPREYAIILPIFLLLLGLSGVGTFL 66 (78)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678887666655555444444433
No 319
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=24.73 E-value=1.8e+02 Score=28.76 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=34.7
Q ss_pred eEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeCCCC
Q 010234 156 LLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAG 206 (514)
Q Consensus 156 ~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg~~~ 206 (514)
.++.|+...--+++++.-......|...|-|.|.+..=.++..||.+-|.+
T Consensus 50 aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P 100 (406)
T KOG0068|consen 50 ALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTP 100 (406)
T ss_pred EEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCC
Confidence 456666666667777764445567788899998766666777888776433
No 320
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=24.45 E-value=92 Score=31.69 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=7.2
Q ss_pred CChhhHHHHHHHHHHHH
Q 010234 469 LSFNEWLLVLAIAFPVV 485 (514)
Q Consensus 469 l~~~~w~~~l~~~~~~~ 485 (514)
+-.+.|..++++++.++
T Consensus 37 ie~sl~~~~~~~~~~~~ 53 (398)
T PRK10747 37 IETSVTGLAIILILAMV 53 (398)
T ss_pred EEehHHHHHHHHHHHHH
Confidence 43444554444433333
No 321
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=24.29 E-value=3.7e+02 Score=26.21 Aligned_cols=112 Identities=11% Similarity=0.052 Sum_probs=65.0
Q ss_pred CChhHHHHHHHHHHcC-CcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 85 PRNEVHQAIEDCRAAG-IRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 85 l~~~~~~~I~~l~~~G-i~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
+.++..++++.+.++. .-.++-+|.+...|..++.++.-...... ...... ............+..++...+.
T Consensus 27 l~~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~----~~~~~~--~~~~~~~~~~~~d~~i~iS~sG 100 (321)
T PRK11543 27 LGDDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAF----FVHPAE--ALHGDLGMIESRDVMLFISYSG 100 (321)
T ss_pred ccHHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCcee----ecChHH--HhhCCcCccCCCCEEEEEeCCC
Confidence 4467788888887764 56777789999889888887744322111 111110 0000001112223444444444
Q ss_pred h--hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 164 R--HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 164 ~--~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
+ +-.++++..++.+-.|+++-+..| .++-+.||+.+.+.
T Consensus 101 ~t~~~~~~~~~ak~~g~~vI~iT~~~~-s~la~~ad~~l~~~ 141 (321)
T PRK11543 101 GAKELDLIIPRLEDKSIALLAMTGKPT-SPLGLAAKAVLDIS 141 (321)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEECCCC-ChhHHhCCEEEEcC
Confidence 3 447788888888888888766543 45667777777554
No 322
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.13 E-value=4.8e+02 Score=25.40 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCEEEEEcCCcC
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVN 188 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~N 188 (514)
+..++.+..++..++.+||...
T Consensus 103 ~~~v~~~~~~Gy~vvi~G~~~H 124 (298)
T PRK01045 103 HKEVARMSREGYEIILIGHKGH 124 (298)
T ss_pred HHHHHHHHhCCCEEEEEeCCCC
Confidence 6678888889999999999543
No 323
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=23.98 E-value=2.7e+02 Score=27.37 Aligned_cols=63 Identities=24% Similarity=0.197 Sum_probs=48.1
Q ss_pred eCCHHHHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhH
Q 010234 10 PLDHKSRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEV 89 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~ 89 (514)
+-++++++...+.++++...|+.|+++-|-.-.++ .. +-+..+
T Consensus 244 ~~~e~dr~~~l~~L~~~~~~G~~Vl~IDY~~~~~~--------------------~~-----------------~n~~~~ 286 (315)
T TIGR01370 244 RPTEAERQRRLLALYRLWQQGKFVLTVDYVDDGTK--------------------TN-----------------ENPARM 286 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCcEEEEEecCCccc--------------------ch-----------------hhHHHH
Confidence 45788999999999999999999999999751000 00 014677
Q ss_pred HHHHHHHHHcCCcEEEECCC
Q 010234 90 HQAIEDCRAAGIRVMVITGD 109 (514)
Q Consensus 90 ~~~I~~l~~~Gi~v~i~TG~ 109 (514)
+++.++++++|....+.+++
T Consensus 287 ~~~~~~~~~~Gf~pYVsd~~ 306 (315)
T TIGR01370 287 KDAAEKARAAGLIPYVAESD 306 (315)
T ss_pred HHHHHHHHHcCCeeeecCch
Confidence 89999999999988888754
No 324
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=23.53 E-value=5.3e+02 Score=24.50 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHc---CCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREI---GVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP 163 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 163 (514)
+...++++.+.+++.-+++-.|.+...|..+...+ |+.. .......... .........+..+....+.
T Consensus 116 ~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~-------~~~~~~~~~~--~~~~~~~~~D~vI~iS~sG 186 (284)
T PRK11302 116 SAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPV-------VYFDDIVMQR--MSCMNSSDGDVVVLISHTG 186 (284)
T ss_pred HHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCce-------EecCCHHHHH--HHHHhCCCCCEEEEEeCCC
Confidence 55667777888887656666666666665544333 3321 1111111000 0111222333444444443
Q ss_pred --hhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 164 --RHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 164 --~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
.+-.++++..++.+..|++|-+ ++.++.+.||+.+.+.
T Consensus 187 ~t~~~~~~~~~ak~~g~~vI~IT~--~~s~l~~~ad~~l~~~ 226 (284)
T PRK11302 187 RTKSLVELAQLARENGATVIAITS--AGSPLAREATLALTLD 226 (284)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECC--CCChhHHhCCEEEecC
Confidence 3346678888899999999985 4778888999888664
No 325
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.12 E-value=2.2e+02 Score=24.38 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=34.4
Q ss_pred EEEEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChH-HHHHHHHHcC
Q 010234 74 TFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKN-TAEAICREIG 122 (514)
Q Consensus 74 ~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~-~a~~ia~~~g 122 (514)
.-+-+.|=| -..++..+.++.+++.|+++.+-||...+ ....+++.+.
T Consensus 63 ~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD 111 (147)
T TIGR02826 63 SCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLD 111 (147)
T ss_pred CEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCC
Confidence 346666666 44577999999999999999999997653 3334554443
No 326
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=23.10 E-value=70 Score=29.44 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=45.0
Q ss_pred CCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECC-CChHHHHHHHHHcCCcc
Q 010234 71 CGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITG-DNKNTAEAICREIGVFE 125 (514)
Q Consensus 71 ~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG-~~~~~a~~ia~~~gi~~ 125 (514)
.+-.++++.++--.--++-++.+++|++.|+|--+.+| ...+..+.+++++|-+.
T Consensus 154 ~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~ 209 (227)
T COG5012 154 LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADA 209 (227)
T ss_pred cCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCc
Confidence 45678888888888888999999999999999766666 55667788899998764
No 327
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.67 E-value=4.6e+02 Score=25.26 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=43.8
Q ss_pred EEEecChhhHHHHHHHHhh--CCCEEEEEcCCc-CCHH---hhhhcCcceeeCCCCcH---HHHhcccccccC
Q 010234 157 LFSRAEPRHKQEIVRLLKE--DGEVVAMTGDGV-NDAP---ALKLADIGIAMGIAGTE---VAKEASDMVLAD 220 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~--~~~~v~~iGDg~-ND~~---ml~~A~igvamg~~~~~---~~k~~ad~v~~~ 220 (514)
-+.-+||..-.+++++++. .+.+|+.+|-|. -=.| |+...|..|......+. ..-..||+++..
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~A 202 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSA 202 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEEC
Confidence 4677899999999998864 578999999994 3455 66666655555433333 233567887753
No 328
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=22.64 E-value=5.6e+02 Score=27.95 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=82.2
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHH-hhhhHHHHHHhhcCceEEEecC
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEF-MEMHDKKAHLRQSGGLLFSRAE 162 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~ 162 (514)
+-.+++.+.++.++++|+-+.++ |.-.+....-..+.|++. ..+..|.+. ...+-.....+. ..+|...+
T Consensus 146 pd~e~a~~Ia~Elq~r~~lvfl~-G~l~EQl~e~gvk~G~~~------~lvp~G~~~ts~vHa~g~AiRa--AliFGgv~ 216 (711)
T PRK09529 146 PDSEKAKKIIKELQKKNLLTFLC-GEVIEQLIEAGVKLGLDY------RLVPLGDDITSAIHAANFAIRA--ALIFGGVE 216 (711)
T ss_pred CChHHHHHHHHHHHHCCcEEEEc-CcHHHHhhhcccccccce------eEEecCCchhhHHHHHHHHHHH--HHHhcCCC
Confidence 33478889999999999877766 644444333334444432 112222111 111111111111 45788888
Q ss_pred hhhHHHHHHHHhhC-CCEEEEEcCCcCCHHhhhhcC-----cceeeCCCCcHHHHhcccccccCCCchhHHHHHHHhHhH
Q 010234 163 PRHKQEIVRLLKED-GEVVAMTGDGVNDAPALKLAD-----IGIAMGIAGTEVAKEASDMVLADDDFSTIVSAVGEGRSI 236 (514)
Q Consensus 163 p~~k~~iv~~l~~~-~~~v~~iGDg~ND~~ml~~A~-----igvamg~~~~~~~k~~ad~v~~~~~~~~i~~~i~~gr~~ 236 (514)
|-+..++.++..++ +..|+|.| ..+|..+-..|| +.+-- +...+..+...+.++.+.+.+.+.+-=-+.|.+
T Consensus 217 pGd~~ei~dY~~nRV~AfViA~G-~~s~~~~A~aaGai~~GfPVIt-d~~~pe~~~~~~~~~~~~~~d~iv~~~le~rgi 294 (711)
T PRK09529 217 PGDYEELLDYTKERVPAFVNALG-ELDDEWVAAAAGAINLGFPVIT-DQDVPEGICVPEWVLSEPDYDKIVQKALEVRGI 294 (711)
T ss_pred CcCHHHHHHHHHhhccEEEEeec-ccCHHHHHHHhhHHhcCCcEee-CCCCccccccccccccCCCHHHHHHHHHHhcCc
Confidence 99999999988765 56788899 556655544444 22221 122222234567777777777776655477765
Q ss_pred HHH
Q 010234 237 YNN 239 (514)
Q Consensus 237 ~~~ 239 (514)
--.
T Consensus 295 ki~ 297 (711)
T PRK09529 295 KVT 297 (711)
T ss_pred eEE
Confidence 443
No 329
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.60 E-value=6.8e+02 Score=23.85 Aligned_cols=118 Identities=15% Similarity=0.235 Sum_probs=68.8
Q ss_pred EecccCCCC-hhHHHHHHHHHHcCCcEEEECCCChHHHHHHH---HHcCCcccCccceecccChHHHhhhhHHHHHHhhc
Q 010234 78 LVGLRDPPR-NEVHQAIEDCRAAGIRVMVITGDNKNTAEAIC---REIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQS 153 (514)
Q Consensus 78 ~~~~~~~l~-~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia---~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
+++--|++- -+..+.+++++++|+.-+++-.-+.+....+. ++.|+.. +.....+. ..+.+ .......
T Consensus 96 lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~----I~lv~PtT-~~eri---~~i~~~a 167 (263)
T CHL00200 96 IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIEL----ILLIAPTS-SKSRI---QKIARAA 167 (263)
T ss_pred EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCE----EEEECCCC-CHHHH---HHHHHhC
Confidence 555556644 49999999999999999999988888777655 4446532 11111111 11111 1111222
Q ss_pred CceEEEec----------ChhhHHHHHHHHhhCCCEEEEEcCCcCCHHh---hhhcCc-ceeeC
Q 010234 154 GGLLFSRA----------EPRHKQEIVRLLKEDGEVVAMTGDGVNDAPA---LKLADI-GIAMG 203 (514)
Q Consensus 154 ~~~i~~~~----------~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~m---l~~A~i-gvamg 203 (514)
+.-+|+-. -+++..++++.++...+.-+++|=|.|+-+. +..+|. ||.+|
T Consensus 168 ~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 168 PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 22333321 2345577788887766666788999985544 444433 67677
No 330
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.56 E-value=2e+02 Score=23.70 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCC
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV 123 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi 123 (514)
+...+..+++++.|+.++-+|-|+...+..++++.++
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 80 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL 80 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 3444555666778899999998888888888887765
No 331
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.30 E-value=1.5e+02 Score=24.78 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHc
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREI 121 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~ 121 (514)
.-.+.++..|.+.|.+-+.+++|+...+..+++.+
T Consensus 22 g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 22 GAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 45678888999999998888999999999999998
No 332
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.24 E-value=9.6e+02 Score=25.52 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=29.0
Q ss_pred ceEEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCc
Q 010234 155 GLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADI 198 (514)
Q Consensus 155 ~~i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~i 198 (514)
...+.-.++++-...++.++..|..+ .+||+.- ..+-+.+|+
T Consensus 123 i~~~~~~~~~e~~~~~~~l~~~G~~~-viG~~~~-~~~A~~~gl 164 (526)
T TIGR02329 123 IVQRSYVTEEDARSCVNDLRARGIGA-VVGAGLI-TDLAEQAGL 164 (526)
T ss_pred eEEEEecCHHHHHHHHHHHHHCCCCE-EECChHH-HHHHHHcCC
Confidence 45677788888899999998887654 4588743 334455553
No 333
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.08 E-value=79 Score=26.66 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=25.6
Q ss_pred cCCcEEEEEecccCCCChhHHHHHHHHHHcCCcEEEECC
Q 010234 70 ECGLTFVGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITG 108 (514)
Q Consensus 70 e~~l~~lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG 108 (514)
..+=.++++-.-- -+|.+.++++..|++|.+++-+||
T Consensus 102 ~~gDvli~iS~SG--~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 102 RPGDVLIVISNSG--NSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp -TT-EEEEEESSS---SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCEEEEECCCC--CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3444455554433 359999999999999999999986
No 334
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=22.01 E-value=5.6e+02 Score=23.12 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHHHHHH-
Q 010234 20 LDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIEDCRA- 98 (514)
Q Consensus 20 ~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~~l~~- 98 (514)
....+.+...|+++++.+-..+-+. +......-|+++ +.++++-++ ..+.+-.+.+
T Consensus 19 ~~i~~~l~eag~~~Vg~~~~~~~~~-------------------~~~~~~~pDvVi---ldie~p~rd-~~e~~~~~~~~ 75 (194)
T COG3707 19 MDIREGLLEAGYQRVGEAADGLEAV-------------------EVCERLQPDVVI---LDIEMPRRD-IIEALLLASEN 75 (194)
T ss_pred hhHHHHHHHcCCeEeeeecccccch-------------------hHHHhcCCCEEE---EecCCCCcc-HHHHHHHhhcC
Confidence 3455667789999999998764321 122233445544 567778888 5555555544
Q ss_pred cCCcEEEECCCChHHHHHHHHHcCCcc
Q 010234 99 AGIRVMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 99 ~Gi~v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
.+-.++++|+.+......-+.+.|...
T Consensus 76 ~~~piv~lt~~s~p~~i~~a~~~Gv~a 102 (194)
T COG3707 76 VARPIVALTAYSDPALIEAAIEAGVMA 102 (194)
T ss_pred CCCCEEEEEccCChHHHHHHHHcCCeE
Confidence 677899999999999999999988743
No 335
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=21.93 E-value=1.2e+02 Score=28.29 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 90 HQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 90 ~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
.|.+.++..+||++++.-+-+...+..+|++.|+.
T Consensus 182 ~emv~Ka~~aGipvivS~sapT~~av~~A~~~git 216 (236)
T PF02634_consen 182 SEMVQKAARAGIPVIVSRSAPTSLAVELARKLGIT 216 (236)
T ss_dssp HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-E
T ss_pred HHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCE
Confidence 57888888999999999999999999999999973
No 336
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=21.90 E-value=2e+02 Score=27.09 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=36.3
Q ss_pred CCcEEEEEecccC--CCC-hhHHHHHHHHHHcCCcEEEE-CCCChHHHHHHHHHcCCc
Q 010234 71 CGLTFVGLVGLRD--PPR-NEVHQAIEDCRAAGIRVMVI-TGDNKNTAEAICREIGVF 124 (514)
Q Consensus 71 ~~l~~lG~~~~~~--~l~-~~~~~~I~~l~~~Gi~v~i~-TG~~~~~a~~ia~~~gi~ 124 (514)
-++..+|.++... +++ .+..+.++.+++.|+++++. ++-+...+..++++.|+.
T Consensus 167 ~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~ 224 (256)
T PF01297_consen 167 YGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVK 224 (256)
T ss_dssp TT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-E
T ss_pred cCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCc
Confidence 5678888884443 333 45567778889999998887 555677889999999863
No 337
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.83 E-value=6.1e+02 Score=24.39 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHcC-CcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecChhhH
Q 010234 88 EVHQAIEDCRAAG-IRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEPRHK 166 (514)
Q Consensus 88 ~~~~~I~~l~~~G-i~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~k 166 (514)
++.+++++.++.. -+.+-++.++.+.+...+ +.|.+ ...+...+|++.
T Consensus 175 ~v~~av~~~r~~~~~~~I~VEv~tleea~eA~-~~gaD------------------------------~I~LD~~~~e~l 223 (277)
T PRK05742 175 GIAQAVAAAHRIAPGKPVEVEVESLDELRQAL-AAGAD------------------------------IVMLDELSLDDM 223 (277)
T ss_pred CHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH-HcCCC------------------------------EEEECCCCHHHH
Confidence 4456666666553 234566666666655543 33331 334456788888
Q ss_pred HHHHHHHhhCCCEEEEEcCCcC--CHHhhhhcCc-ceeeC
Q 010234 167 QEIVRLLKEDGEVVAMTGDGVN--DAPALKLADI-GIAMG 203 (514)
Q Consensus 167 ~~iv~~l~~~~~~v~~iGDg~N--D~~ml~~A~i-gvamg 203 (514)
.++++..+ ..-.+.+.| |.| +++.+..+|+ +|++|
T Consensus 224 ~~~v~~~~-~~i~leAsG-GIt~~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 224 REAVRLTA-GRAKLEASG-GINESTLRVIAETGVDYISIG 261 (277)
T ss_pred HHHHHHhC-CCCcEEEEC-CCCHHHHHHHHHcCCCEEEEC
Confidence 88887663 234678888 554 6778888885 67787
No 338
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=21.81 E-value=3.9e+02 Score=27.48 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhhcCCeEEEEEEeeCCCCccCCCCCCCCcccccccCCCccccccCCcEEEEEecccCCCChhHHHHHH
Q 010234 15 SRNLILDALHEMSTGALRCLGFAYKDELPDFETYDGNEDHPAHTLLLNPSNYASMECGLTFVGLVGLRDPPRNEVHQAIE 94 (514)
Q Consensus 15 ~~~~~~~~~~~~~~~G~r~l~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~~~~~l~~~~~~~I~ 94 (514)
.++.+..-.+.+..+|+.+---+.+. +... +.+-. +.+=.+++++..-.-+-... =..+.|-
T Consensus 10 ~~~~yS~Ff~~L~~rg~~l~~~~~~d---~~l~------------L~~~g--e~~YD~LIif~~~~k~~g~~-ls~~~ll 71 (423)
T PF03345_consen 10 IKETYSTFFNSLKERGYELTFKSADD---ESLS------------LFKYG--ERLYDHLIIFPPSVKEFGGS-LSPKTLL 71 (423)
T ss_pred chhhHHHHHHHHHhCCCEEEEecCCC---CCcc------------hhhCC--hhhcceEEEeCCcccccCCC-CCHHHHH
Confidence 35557778889999999874444332 1110 10000 11124455444332221111 1245566
Q ss_pred HHHHcCCcEEEECCCC--hHHHHHHHHHcCCccc
Q 010234 95 DCRAAGIRVMVITGDN--KNTAEAICREIGVFEC 126 (514)
Q Consensus 95 ~l~~~Gi~v~i~TG~~--~~~a~~ia~~~gi~~~ 126 (514)
+.-++|-.+.++++.. ....+.++.+||+.-.
T Consensus 72 ~Fvd~GgNilv~~s~~~~~~~ir~~~~E~gi~~~ 105 (423)
T PF03345_consen 72 DFVDNGGNILVAGSSDAIPDSIREFANELGIEFD 105 (423)
T ss_pred HHHhCCCcEEEEeCCCcCcHHHHHHHHHCCeEEC
Confidence 6667777777766666 8899999999998653
No 339
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.69 E-value=6.5e+02 Score=24.08 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccCccceecccChHHHhhhhHHHHHHhhcCceEEEecCh--h
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECNEDISLKSLTGKEFMEMHDKKAHLRQSGGLLFSRAEP--R 164 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p--~ 164 (514)
+...++++.+.++....++-.|.....|..++.++.-.... .....+... ...........+..+....+. .
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~----~~~~~d~~~--~~~~~~~~~~~Dl~I~iS~sG~t~ 201 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVR----CQAYDDAHI--MLMSAALLQEGDVVLVVSHSGRTS 201 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCe----EEEcCCHHH--HHHHHhcCCCCCEEEEEeCCCCCH
Confidence 55667777788887777888888888888887765322111 111111111 111112223334444444333 3
Q ss_pred hHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhcCcceeeC
Q 010234 165 HKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMG 203 (514)
Q Consensus 165 ~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A~igvamg 203 (514)
.-.++++..+..+-.+++|-|.. +.++-+.||+-+.+.
T Consensus 202 ~~~~~~~~ak~~g~~ii~IT~~~-~s~la~~ad~~l~~~ 239 (292)
T PRK11337 202 DVIEAVELAKKNGAKIICITNSY-HSPIAKLADYVICST 239 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCC-CChhHHhCCEEEEcC
Confidence 34677788888888888887765 335556677666544
No 340
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.66 E-value=2.1e+02 Score=24.00 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCC
Q 010234 87 NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV 123 (514)
Q Consensus 87 ~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi 123 (514)
+...+..+++++.|++++.++.++...+..++++.++
T Consensus 49 ~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 49 CALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 3445555666777899999999888888888887765
No 341
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=21.57 E-value=3e+02 Score=22.92 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=27.4
Q ss_pred EEEecccCCCChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcC
Q 010234 76 VGLVGLRDPPRNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIG 122 (514)
Q Consensus 76 lG~~~~~~~l~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~g 122 (514)
+|+++- .++-... -..|+++|+.+.-+.+|+...+...+..++
T Consensus 13 I~iIGa-GrVG~~L---a~aL~~ag~~v~~v~srs~~sa~~a~~~~~ 55 (127)
T PF10727_consen 13 IGIIGA-GRVGTAL---ARALARAGHEVVGVYSRSPASAERAAAFIG 55 (127)
T ss_dssp EEEECT-SCCCCHH---HHHHHHTTSEEEEESSCHH-HHHHHHC--T
T ss_pred EEEECC-CHHHHHH---HHHHHHCCCeEEEEEeCCcccccccccccc
Confidence 555554 2333332 334678999999999999888888777654
No 342
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=21.53 E-value=3e+02 Score=24.86 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=31.2
Q ss_pred EEEecChhhHHHHHHHHhhCCCEEEEEcCCcCCHHhhhhc
Q 010234 157 LFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 157 i~~~~~p~~k~~iv~~l~~~~~~v~~iGDg~ND~~ml~~A 196 (514)
.|-|.+.+....-++.-+..+...-.+|-..||.+.|++.
T Consensus 43 sFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~ 82 (289)
T COG3954 43 SFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQT 82 (289)
T ss_pred cccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHH
Confidence 4556665666666777778899999999999999988764
No 343
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=21.35 E-value=2.4e+02 Score=27.62 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCcEEEEEecccCC---CChhHHHHHHHHHHcCCcEEEECC-CChHHHHHHHHHcCC
Q 010234 71 CGLTFVGLVGLRDP---PRNEVHQAIEDCRAAGIRVMVITG-DNKNTAEAICREIGV 123 (514)
Q Consensus 71 ~~l~~lG~~~~~~~---l~~~~~~~I~~l~~~Gi~v~i~TG-~~~~~a~~ia~~~gi 123 (514)
-++..+|.+..... -..+..+.++.+++.|++++++-- -+...++.+++++|.
T Consensus 220 ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~ 276 (311)
T PRK09545 220 YGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSV 276 (311)
T ss_pred CCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCC
Confidence 45666777665433 334556789999999999998754 467788999999986
No 344
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.20 E-value=5.6e+02 Score=22.39 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHc
Q 010234 88 EVHQAIEDCRAAGIRVMVITGDNKNTAEAICREI 121 (514)
Q Consensus 88 ~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~ 121 (514)
=..+.++.+.+.|.++.++ |..+..+...++.+
T Consensus 34 l~~~ll~~~~~~~~~v~ll-G~~~~~~~~~~~~l 66 (171)
T cd06533 34 LMPALLELAAQKGLRVFLL-GAKPEVLEKAAERL 66 (171)
T ss_pred HHHHHHHHHHHcCCeEEEE-CCCHHHHHHHHHHH
Confidence 3457777888889999999 44555555555444
No 345
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=20.88 E-value=1.8e+02 Score=25.27 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=40.0
Q ss_pred EEEEecccCCCCh------hHHHHHHHHHHcCC-cEEEECCCChHHHHHHHHHcCCcc
Q 010234 75 FVGLVGLRDPPRN------EVHQAIEDCRAAGI-RVMVITGDNKNTAEAICREIGVFE 125 (514)
Q Consensus 75 ~lG~~~~~~~l~~------~~~~~I~~l~~~Gi-~v~i~TG~~~~~a~~ia~~~gi~~ 125 (514)
.++.++++.+-|. =++.+|+.+++.|. .|++=|......|.++.+.+|+..
T Consensus 86 yi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r 143 (165)
T KOG3139|consen 86 YIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKR 143 (165)
T ss_pred EEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceE
Confidence 4555666555432 25789999999998 578889999999999999999865
No 346
>PRK13670 hypothetical protein; Provisional
Probab=20.68 E-value=5.2e+02 Score=26.27 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=59.2
Q ss_pred EEEEEecccCCCChhHHHHHHHHHH---cCCcEEEECCCC----------hHHHHHHHHHcCCcccCccceecccChHHH
Q 010234 74 TFVGLVGLRDPPRNEVHQAIEDCRA---AGIRVMVITGDN----------KNTAEAICREIGVFECNEDISLKSLTGKEF 140 (514)
Q Consensus 74 ~~lG~~~~~~~l~~~~~~~I~~l~~---~Gi~v~i~TG~~----------~~~a~~ia~~~gi~~~~~~~~~~~~~~~~~ 140 (514)
..+|+|+-=|++..|=...|+++++ +|..+++.+|+- ...=..++.++|++-- ..
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~p~i~~~~~R~~~a~~~GvD~v----ie-------- 69 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGEPAIVDKWTRAKMALENGVDLV----VE-------- 69 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCCCCCCCHHHHHHHHHHcCCCEE----EE--------
Confidence 4689999999999999999988874 477788887651 1122233444444210 00
Q ss_pred hhhhHHHHHHhhcCceEEEecChhhHH-HHHHHHhhCCCEEEEEcCCcCCHHhhhhc
Q 010234 141 MEMHDKKAHLRQSGGLLFSRAEPRHKQ-EIVRLLKEDGEVVAMTGDGVNDAPALKLA 196 (514)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~~~p~~k~-~iv~~l~~~~~~v~~iGDg~ND~~ml~~A 196 (514)
.+. .++..+|+.=. ..|+.++..+-..++||....|.+.|+..
T Consensus 70 ------------lpf-~~a~~sae~F~~~aV~iL~~l~v~~lv~G~e~g~~~~L~~~ 113 (388)
T PRK13670 70 ------------LPF-LYSVQSADFFAEGAVSILDALGVDSLVFGSESGDIEDFQKI 113 (388)
T ss_pred ------------eCC-chHhCCHHHHHHhHHHHHHHcCCCEEEEcCCCCCHHHHHHH
Confidence 001 14445555433 33445555556789999997777666654
No 347
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=20.48 E-value=6e+02 Score=23.31 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHcCCcEE-EEC------------CCChHHHHHHHHHcCCc
Q 010234 88 EVHQAIEDCRAAGIRVM-VIT------------GDNKNTAEAICREIGVF 124 (514)
Q Consensus 88 ~~~~~I~~l~~~Gi~v~-i~T------------G~~~~~a~~ia~~~gi~ 124 (514)
|..-++..+++.|+.+. ++| +.....++.+|+.+|+.
T Consensus 9 DS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip 58 (218)
T TIGR03679 9 DSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIP 58 (218)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCC
Confidence 44456667777888874 444 33456778888888875
No 348
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=20.40 E-value=5.9e+02 Score=25.07 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=32.6
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCcccC
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFECN 127 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~~~~ 127 (514)
.+.+.++++++.+.|+---++-| +....+..++++|+.-..
T Consensus 24 D~~vL~Aa~~~~~egia~pILvG-~~~~I~~~a~~~~l~l~~ 64 (319)
T PF01515_consen 24 DERVLEAAKQAVEEGIAKPILVG-DREEIREIAKELGLDLDG 64 (319)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEES--HHHHHHHHHHTTC--TT
T ss_pred CHHHHHHHHHHHHcCceEEEEEe-ChHHhcchhhhccccccc
Confidence 58899999999999997777777 677888889999987655
No 349
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=20.32 E-value=1.9e+02 Score=27.06 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=32.9
Q ss_pred ChhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCCc
Q 010234 86 RNEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVF 124 (514)
Q Consensus 86 ~~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi~ 124 (514)
.+..++++++|+++||+|-++= |+.......++++|-+
T Consensus 112 ~~~l~~~i~~L~~~gIrVSLFi-dP~~~qi~~A~~~GAd 149 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGAD 149 (239)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHhCcC
Confidence 4778899999999999998888 7888888889999864
No 350
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.28 E-value=7.3e+02 Score=23.38 Aligned_cols=47 Identities=11% Similarity=0.209 Sum_probs=31.8
Q ss_pred CCChhHHHHHHHHHHcCCcEEEECCCC--hHHHHHHHHHcCCcccCccc
Q 010234 84 PPRNEVHQAIEDCRAAGIRVMVITGDN--KNTAEAICREIGVFECNEDI 130 (514)
Q Consensus 84 ~l~~~~~~~I~~l~~~Gi~v~i~TG~~--~~~a~~ia~~~gi~~~~~~~ 130 (514)
+.-..+...+++..+.|-++.+++-+. .+.+...|+.+|...-+..+
T Consensus 48 ~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g~~yV~~Rw 96 (252)
T COG0052 48 ERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTGAYYVNGRW 96 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhCCceecCcc
Confidence 334667777888877788887777774 34566778888875544433
No 351
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=20.19 E-value=2.3e+02 Score=23.53 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhccc-cccccccccCChhhHHHHHHHHHH
Q 010234 442 LAMSVSFGLHFLILYVPF-LAQIFGIVPLSFNEWLLVLAIAFP 483 (514)
Q Consensus 442 ~~~~~~~~l~~~~~~ip~-~~~~f~~~~l~~~~w~~~l~~~~~ 483 (514)
++..+.+++.++-.++|- .-+.++.+-.|-.+|.+++.+-++
T Consensus 12 i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l 54 (126)
T PF08510_consen 12 ILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLL 54 (126)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHH
Confidence 444455555555566664 222367777888888886665433
No 352
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=20.00 E-value=1.8e+02 Score=23.37 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=42.3
Q ss_pred cccccCCcEEEEEecc-cCCCC----hhHHHHHHHHHHcCCcEEEECCCChHHHHHHHHHcCC
Q 010234 66 YASMECGLTFVGLVGL-RDPPR----NEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGV 123 (514)
Q Consensus 66 ~~~~e~~l~~lG~~~~-~~~l~----~~~~~~I~~l~~~Gi~v~i~TG~~~~~a~~ia~~~gi 123 (514)
.+++....+++.+... ..+.- ++..+..++++++|++++.+|-++......+.++.++
T Consensus 20 l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 20 LSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred HHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 4455566788888777 44433 3334555566677999999999999999999888874
Done!