Query 010235
Match_columns 514
No_of_seqs 279 out of 2036
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 22:49:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qdm_A Prophytepsin; aspartic 100.0 1.3E-85 4.3E-90 696.4 40.9 478 31-514 1-478 (478)
2 3psg_A Pepsinogen; hydrolase(a 100.0 2.7E-69 9.1E-74 555.6 36.4 368 30-514 1-370 (370)
3 2x0b_A Renin; hydrolase-hormon 100.0 1.1E-68 3.9E-73 552.2 35.9 373 29-514 7-383 (383)
4 1tzs_A Cathepsin E; hydrolase, 100.0 2.6E-63 8.7E-68 508.4 35.3 331 77-514 12-342 (351)
5 3cms_A Chymosin B; hydrolase, 100.0 4.9E-63 1.7E-67 500.7 36.8 322 76-514 2-323 (323)
6 3k1w_A Renin; protease, altern 100.0 3.1E-63 1.1E-67 506.0 35.5 332 76-514 6-340 (341)
7 1dpj_A Proteinase A; proteinas 100.0 9.5E-63 3.2E-67 499.9 36.8 326 78-514 3-329 (329)
8 4aa9_A Chymosin; hydrolase, as 100.0 4.7E-63 1.6E-67 500.3 33.1 319 79-514 2-320 (320)
9 1am5_A Pepsin, acid proteinase 100.0 1E-62 3.5E-67 498.6 34.2 322 79-514 3-324 (324)
10 1htr_B Gastricsin; aspartyl pr 100.0 1.3E-62 4.6E-67 498.8 33.0 325 79-514 4-329 (329)
11 3qvc_A Histo-aspartic protease 100.0 3.1E-62 1.1E-66 513.1 34.1 322 75-514 124-449 (451)
12 1miq_A Plasmepsin; aspartic pr 100.0 6.2E-62 2.1E-66 501.7 33.4 321 76-514 50-374 (375)
13 2bju_A Plasmepsin II; aspartic 100.0 9E-62 3.1E-66 508.9 34.0 322 76-514 126-450 (453)
14 1mpp_A Pepsin; hydrolase(acid 100.0 1.9E-60 6.4E-65 489.1 32.0 327 75-514 5-355 (361)
15 1yg9_A Aspartic protease BLA G 100.0 2.6E-60 8.8E-65 482.0 32.4 318 77-514 6-329 (330)
16 2apr_A Rhizopuspepsin; hydrola 100.0 4.6E-58 1.6E-62 464.5 38.0 311 84-514 11-324 (325)
17 3c9x_A Trichoderma reesei aspa 100.0 4.3E-58 1.5E-62 465.5 35.2 312 85-513 12-329 (329)
18 1oew_A Endothiapepsin; hydrola 100.0 6E-58 2.1E-62 464.5 33.8 310 86-513 13-329 (329)
19 3fv3_A SAPP1P-secreted asparti 100.0 5E-57 1.7E-61 459.8 35.8 313 78-514 3-329 (339)
20 2qzx_A Candidapepsin-5; aspart 100.0 1.3E-56 4.4E-61 457.3 36.7 314 78-514 3-331 (342)
21 1ibq_A Aspergillopepsin; aspar 100.0 8.6E-57 2.9E-61 455.2 34.4 309 86-514 12-325 (325)
22 1izd_A Aspartic proteinase; su 100.0 8.2E-57 2.8E-61 454.9 33.6 312 78-514 7-323 (323)
23 1j71_A Candidapepsin, aspartic 100.0 1.5E-56 5.3E-61 455.1 35.8 309 78-514 3-324 (334)
24 3pvk_A Candidapepsin-2; hydrol 100.0 2.1E-56 7.1E-61 455.8 33.9 315 78-514 3-331 (342)
25 1bxo_A Protein (penicillopepsi 100.0 7.2E-57 2.5E-61 455.4 28.7 312 78-514 7-323 (323)
26 1wkr_A Polyporopepsin; hydrola 100.0 2.8E-55 9.5E-60 447.1 34.7 312 78-514 3-333 (340)
27 3lpj_A Beta-secretase 1; alzhe 100.0 1.1E-54 3.9E-59 459.1 28.8 325 80-514 66-420 (455)
28 2ewy_A Beta-secretase 2; BACE2 100.0 6.8E-54 2.3E-58 443.9 30.9 325 80-514 5-355 (383)
29 2qp8_A Beta-secretase 1; BACE1 100.0 1.9E-53 6.5E-58 442.2 29.8 324 80-514 13-367 (395)
30 3vf3_A Beta-secretase 1; struc 100.0 1.7E-53 6E-58 443.5 28.7 323 82-514 22-374 (402)
31 3aup_A SBG7S, BG, basic 7S glo 100.0 3.4E-52 1.1E-56 433.7 27.7 324 77-513 9-386 (403)
32 3vla_A EDGP; extracellular, in 100.0 1.3E-51 4.4E-56 429.3 24.2 335 76-513 7-398 (413)
33 1t6e_X Xylanase inhibitor; two 100.0 1E-48 3.4E-53 404.5 21.5 324 79-514 4-373 (381)
34 1b5f_A Protein (cardosin A); h 100.0 1.2E-47 4.1E-52 371.1 25.7 237 78-318 3-239 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 6.2E-44 2.1E-48 345.7 26.8 241 169-514 1-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 4.6E-23 1.6E-27 169.4 10.7 93 78-170 3-96 (97)
37 1b5f_B Protein (cardosin A); h 99.8 1.1E-20 3.7E-25 152.5 9.7 87 427-514 1-87 (87)
38 3rfi_A Asp; PSI, saposin, hydr 99.5 2.6E-15 8.9E-20 125.3 4.4 106 317-423 3-108 (108)
39 3bqp_A Proactivator polypeptid 96.4 0.002 7E-08 49.7 3.3 47 385-434 2-48 (80)
40 2qyp_A Proactivator polypeptid 96.2 0.0019 6.6E-08 51.4 2.5 48 384-434 4-51 (91)
41 4ddj_A Saposin-A, protein A; s 95.9 0.0053 1.8E-07 47.8 3.6 40 386-425 4-43 (83)
42 1l9l_A Granulysin; saposin fol 95.0 0.012 4.2E-07 44.6 2.7 37 387-424 3-39 (74)
43 2gtg_A Proactivator polypeptid 94.9 0.016 5.4E-07 45.0 3.2 41 384-424 3-43 (83)
44 1of9_A Pore-forming peptide am 94.6 0.018 6.1E-07 44.1 2.6 40 385-425 2-41 (77)
45 1nkl_A NK-lysin; saposin fold, 94.1 0.022 7.6E-07 43.7 2.2 38 387-424 3-40 (78)
46 1n69_A Saposin B; lipid bindin 94.0 0.031 1E-06 43.2 2.9 39 386-424 4-43 (81)
47 2qyp_A Proactivator polypeptid 93.9 0.052 1.8E-06 42.9 4.2 39 321-359 46-84 (91)
48 2i1a_A DNA damage-inducible pr 93.9 0.085 2.9E-06 45.6 5.9 96 81-201 18-115 (148)
49 1nkl_A NK-lysin; saposin fold, 92.7 0.044 1.5E-06 42.0 1.9 37 321-357 41-77 (78)
50 3bqp_A Proactivator polypeptid 92.5 0.046 1.6E-06 41.8 1.8 37 321-357 43-79 (80)
51 2js9_A Saposin-like protein fa 92.3 0.045 1.5E-06 44.0 1.5 38 320-357 62-99 (99)
52 2i1a_A DNA damage-inducible pr 91.8 0.52 1.8E-05 40.5 7.9 26 486-511 109-134 (148)
53 2js9_A Saposin-like protein fa 91.7 0.023 8E-07 45.7 -0.8 52 383-436 19-70 (99)
54 1of9_A Pore-forming peptide am 91.5 0.052 1.8E-06 41.5 1.0 37 320-356 41-77 (77)
55 2gtg_A Proactivator polypeptid 91.4 0.069 2.4E-06 41.3 1.6 37 321-357 45-81 (83)
56 4ddj_A Saposin-A, protein A; s 89.3 0.11 3.9E-06 40.0 1.2 37 321-357 45-82 (83)
57 3s8i_A Protein DDI1 homolog 1; 89.1 0.49 1.7E-05 40.9 5.3 91 87-201 22-114 (148)
58 3s8i_A Protein DDI1 homolog 1; 88.1 0.76 2.6E-05 39.7 5.8 26 486-511 108-133 (148)
59 1l9l_A Granulysin; saposin fol 88.0 0.2 6.9E-06 37.8 1.8 33 321-353 41-73 (74)
60 1n69_A Saposin B; lipid bindin 88.0 0.18 6.3E-06 38.7 1.6 36 321-357 45-80 (81)
61 2hs1_A HIV-1 protease; ultra-h 77.8 2.7 9.2E-05 33.5 4.5 29 91-121 10-38 (99)
62 1fmb_A EIAV protease; hydrolas 76.7 2.3 8E-05 34.2 4.0 26 90-117 9-34 (104)
63 3ec0_A Protease; HIV-2, inhibi 73.1 4.3 0.00015 32.2 4.6 29 91-121 10-38 (99)
64 3s64_A AC-SLP-1, saposin-like 71.9 3.3 0.00011 32.1 3.5 51 306-356 36-87 (87)
65 3liy_A Protease; hydrolase, hy 68.9 4.1 0.00014 33.2 3.6 32 91-122 12-46 (116)
66 2hah_A Protease, retropepsin; 62.4 6.6 0.00023 32.2 3.7 26 91-119 16-41 (116)
67 3vcm_P Prorenin; aspartic prot 59.3 7.2 0.00025 25.6 2.9 24 29-52 7-30 (43)
68 3sqf_A Protease; folded monome 55.7 11 0.00037 30.7 3.8 29 91-121 11-39 (114)
69 3slz_A GAG-Pro-POL polyprotein 53.2 15 0.00053 30.7 4.6 29 90-120 23-51 (132)
70 3ka2_A [L-Ala51;Gly51']HIV-1 p 42.7 20 0.00068 32.3 3.8 29 90-120 9-37 (203)
71 2rsp_A RSV protease; hydrolase 41.1 25 0.00086 29.0 3.9 24 96-121 27-50 (124)
72 1bxo_A Protein (penicillopepsi 36.6 37 0.0013 32.7 5.1 42 255-306 3-44 (323)
73 1htr_P Progastricsin (Pro segm 35.3 18 0.00062 23.1 1.8 23 29-51 1-23 (43)
74 1ibq_A Aspergillopepsin; aspar 35.1 39 0.0013 32.5 5.0 41 256-306 3-43 (325)
75 1izd_A Aspartic proteinase; su 33.9 43 0.0015 32.2 5.1 41 256-306 4-44 (323)
76 1lya_A Cathepsin D; lysosomal 33.6 29 0.001 27.0 3.1 31 267-305 13-43 (97)
77 1tzs_P Activation peptide from 33.4 17 0.00058 21.9 1.4 21 29-49 2-22 (35)
78 1mpp_A Pepsin; hydrolase(acid 24.5 68 0.0023 31.2 4.7 44 255-306 4-49 (361)
79 1oew_A Endothiapepsin; hydrola 23.9 80 0.0027 30.3 5.0 43 256-306 3-46 (329)
80 3c9x_A Trichoderma reesei aspa 22.0 91 0.0031 29.9 5.0 43 256-306 3-46 (329)
81 3ka2_A [L-Ala51;Gly51']HIV-1 p 21.7 97 0.0033 27.8 4.6 29 91-121 114-142 (203)
82 2apr_A Rhizopuspepsin; hydrola 20.7 1E+02 0.0035 29.5 5.0 42 257-306 5-46 (325)
83 1b5f_A Protein (cardosin A); h 20.4 1E+02 0.0034 28.1 4.7 38 79-118 181-226 (239)
No 1
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=1.3e-85 Score=696.38 Aligned_cols=478 Identities=73% Similarity=1.277 Sum_probs=399.2
Q ss_pred EEEeccccCCchhhhhhhccccccccchhhccccccccCCCCCCCCccEEeceeccCceEEEEEEecCCCceEEEEeeCC
Q 010235 31 YRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTG 110 (514)
Q Consensus 31 ~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTG 110 (514)
+||||+|+++.++.+.+.+......+.+. +++. ...++.....+||.|+.+.+|+++|+||||||+|.|+||||
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTG 74 (478)
T 1qdm_A 1 VRIALKKRPIDRNSRVATGLSGGEEQPLL---SGAN---PLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTG 74 (478)
T ss_dssp CEEEEEECCCCHHHHHHHHTC----------------------CCSSCSGGGCCGGGCCEEEEEEETTTTEEEEEEEETT
T ss_pred CeeeeeeccchHHHHHhcchhhhhHHHHH---hhcc---cccCcCCCceEEeEeccCCEEEEEEEECCCCeEEEEEEcCC
Confidence 48999999999888877664322111011 1111 11222345679999999999999999999999999999999
Q ss_pred CCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEEEECceeecccEEEEEEeeCCcccc
Q 010235 111 SSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFL 190 (514)
Q Consensus 111 Ss~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~ 190 (514)
|+++||+|..|..+..|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|+|++..++++.||++....+..|.
T Consensus 75 Ss~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~ 154 (478)
T 1qdm_A 75 SSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFL 154 (478)
T ss_dssp CCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEECCBSHHH
T ss_pred CcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCCeEEEEEEEEEEECCeEECCEEEEEEEecCCcccc
Confidence 99999999999655689999999999999999999999999999999999999999999999999999999987665555
Q ss_pred cccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceE
Q 010235 191 LAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQ 270 (514)
Q Consensus 191 ~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~ 270 (514)
...++||||||++..+.....|++++|++||+|++++||+||++..+....|.|+|||+|+++|.|++.|+|+...++|.
T Consensus 155 ~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~~~w~ 234 (478)
T 1qdm_A 155 VAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQ 234 (478)
T ss_dssp HCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEE
T ss_pred cccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCCCeEE
Confidence 66789999999998887677889999999999999999999988643334899999999999999999999999889999
Q ss_pred EEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchh
Q 010235 271 FDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKIC 350 (514)
Q Consensus 271 v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~ 350 (514)
|.+++|.|++..+.++.....++|||||+++++|.+++++|.+++++.+.+..+|+.++++|++++++.+.++..|.++|
T Consensus 235 v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC 314 (478)
T 1qdm_A 235 FDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKIC 314 (478)
T ss_dssp EEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHH
T ss_pred EEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhh
Confidence 99999999998876666778999999999999999999999999999988899999999999999999999999999999
Q ss_pred ccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCee
Q 010235 351 SQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESA 430 (514)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 430 (514)
.+.++|..++.+.+++++++++++.++.+++..++.+|++|||++.|++++|++|.|+++|+++++++|+.++...|.|.
T Consensus 315 ~~iglC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~ 394 (478)
T 1qdm_A 315 SQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESA 394 (478)
T ss_dssp HHTTCC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCE
T ss_pred ccccccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEE
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEE
Q 010235 431 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGF 510 (514)
Q Consensus 431 ~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGf 510 (514)
++|+.+..+|+|+|+|+|+.|+|+|++|+++..++....|+++|++++++++.++.||||++|||++|+|||++|+||||
T Consensus 395 v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~fl~~~y~vfD~~~~rIGf 474 (478)
T 1qdm_A 395 VDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGF 474 (478)
T ss_dssp ECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEECHHHHTTEEEEEETTTTEEEE
T ss_pred eecccccccccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEECHHHhccEEEEEECCCCEEEE
Confidence 99998889999999999999999999999986654456899999988776566789999999999999999999999999
Q ss_pred EEcC
Q 010235 511 AEAA 514 (514)
Q Consensus 511 a~a~ 514 (514)
|+++
T Consensus 475 A~a~ 478 (478)
T 1qdm_A 475 AKAA 478 (478)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 9986
No 2
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=2.7e-69 Score=555.58 Aligned_cols=368 Identities=42% Similarity=0.768 Sum_probs=320.0
Q ss_pred eEEEeccccCCchhhhhhhccccccccchhhccccccccCCCCCC--CCccEEeceeccCceEEEEEEecCCCceEEEEe
Q 010235 30 LYRIGLKKRKFDLNNRVAARLDSKEGESFRTSIRKYSLRGNLGES--GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIF 107 (514)
Q Consensus 30 ~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~ 107 (514)
++||||+|.++.++.+.+.+...+ +++. |++....+.... .....+||.|+.|.+|+++|+||||||+|.|++
T Consensus 1 ~~~ipl~~~~s~r~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~ 75 (370)
T 3psg_A 1 LVKVPLVRKKSLRQNLIKDGKLKD---FLKT--HKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIF 75 (370)
T ss_dssp CEEEEEEECCCHHHHHHHTTCHHH---HHHH--CCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEE
T ss_pred CEEEEeEEcCcHHHHHHhcCcHHH---HHhh--hhcchhhhhccccccccceecceeccCCEEEEEEEEcCCCCEEEEEE
Confidence 479999999999998888776554 4442 222222111111 145678999999999999999999999999999
Q ss_pred eCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEEEECceeecccEEEEEEeeCCc
Q 010235 108 DTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPSL 187 (514)
Q Consensus 108 DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~ 187 (514)
||||+++||+|..|. +..|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|+|++..++++.||++....+.
T Consensus 76 DTGSs~lWV~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~ 154 (370)
T 3psg_A 76 DTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGS 154 (370)
T ss_dssp ETTCCCEEEEBTTCC-SGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCG
T ss_pred eCCCCccEEECCCCC-CcccCCCCCCCCccCcCcEECCcEEEEEeCCceEEEEEEEEEEeeCCcccCCeEEEEEEeeccc
Confidence 999999999999996 5689999999999999999999999999999999999999999999999999999999987765
Q ss_pred ccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCcc
Q 010235 188 TFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKG 267 (514)
Q Consensus 188 ~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~ 267 (514)
.+....++||||||++..+.....|++++|++||+|++++||+||.+.. ...|+|+|||+|+++|.|++.|+|+.+.+
T Consensus 155 ~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~~~G~l~fGg~D~~~y~g~l~~~pv~~~~ 232 (370)
T 3psg_A 155 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSND--DSGSVVLLGGIDSSYYTGSLNWVPVSVEG 232 (370)
T ss_dssp GGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSEET
T ss_pred ccccCCccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCC--CCCeEEEEEeeChHhcCCcceeecccccc
Confidence 5667788999999999988777889999999999999999999999862 23899999999999999999999999999
Q ss_pred ceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCcc
Q 010235 268 YWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQ 347 (514)
Q Consensus 268 ~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~ 347 (514)
+|.|.+++|++++..+. +.....++|||||+++++|.+++++|.+++++..
T Consensus 233 ~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~---------------------------- 283 (370)
T 3psg_A 233 YWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASE---------------------------- 283 (370)
T ss_dssp TEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEE----------------------------
T ss_pred eeEEEEeEEEECCEEEe-cCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcc----------------------------
Confidence 99999999999998775 5567899999999999999999999999997751
Q ss_pred chhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCC
Q 010235 348 KICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMG 427 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 427 (514)
...|
T Consensus 284 ----------------------------------------------------------------------------~~~g 287 (370)
T 3psg_A 284 ----------------------------------------------------------------------------NSDG 287 (370)
T ss_dssp ----------------------------------------------------------------------------CTTC
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 2346
Q ss_pred CeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCe
Q 010235 428 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMR 507 (514)
Q Consensus 428 ~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~r 507 (514)
.|.++|+.+..+|+|+|+|+|++++||+++|+++ . .+.|+++|+..+.+++.++.||||++|||++|+|||++++|
T Consensus 288 ~~~v~C~~~~~lP~i~f~~~g~~~~l~~~~yi~~-~---~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~r 363 (370)
T 3psg_A 288 EMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQ-D---DDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNK 363 (370)
T ss_dssp CEECCGGGGGGCCCEEEEETTEEEEECHHHHEEE-C---SSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTE
T ss_pred cEEEECCCcccCCcEEEEECCEEEEECHHHhccc-C---CCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCE
Confidence 7999999888899999999999999999999998 2 24799999987755445567999999999999999999999
Q ss_pred EEEEEcC
Q 010235 508 VGFAEAA 514 (514)
Q Consensus 508 iGfa~a~ 514 (514)
||||+|+
T Consensus 364 iGfA~a~ 370 (370)
T 3psg_A 364 VGLAPVA 370 (370)
T ss_dssp EEEEEBC
T ss_pred EEEEEcC
Confidence 9999986
No 3
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.1e-68 Score=552.18 Aligned_cols=373 Identities=40% Similarity=0.758 Sum_probs=297.9
Q ss_pred ceEEEeccccCCchhhhhhhcc-ccccccchhhccccccccCCCCCCCCccEEeceeccCceEEEEEEecCCCceEEEEe
Q 010235 29 GLYRIGLKKRKFDLNNRVAARL-DSKEGESFRTSIRKYSLRGNLGESGDADIVALKNYMDAQYFGEIGIGTPPQNFTVIF 107 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~ 107 (514)
+++||||+|+++.++.+.+.+. ..+ +++.....+.. .........+||.|+.+.+|+++|+||||||+|.|+|
T Consensus 7 ~~~~i~l~k~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~l~n~~~~~Y~~~I~IGTP~Q~f~vi~ 80 (383)
T 2x0b_A 7 TFKRIFLKRMPSIRESLKERGVDMAR---LGPEWSQPMKR---LTLGNTTSSVILTNYMDTQYYGEIGIGTPPQTFKVVF 80 (383)
T ss_dssp --------------------------------------------------CEEEEEEETTTEEEEEEEETTTTEEEEEEE
T ss_pred cEEEEEEEECCcHHHHHHHhCchHHH---HHHhhcccccc---ccccCCcceEeeeecCCCEEEEEEEECCCCcEEEEEE
Confidence 4789999999888777666554 222 22211000000 0001234569999999999999999999999999999
Q ss_pred eCCCCceeeeCCCCCC-CcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEEEEEEEEECceeecccEEEEEEeeCC
Q 010235 108 DTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFFSEDHVKIGDLVVKDQEFIEATREPS 186 (514)
Q Consensus 108 DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~ 186 (514)
||||+++||+|..|.. ...|..++.|+|++|+||+..++.|.+.|++|++.|.+++|+|+|++..++ +.||++....+
T Consensus 81 DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~g 159 (383)
T 2x0b_A 81 DTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITVT-QMFGEVTEMPA 159 (383)
T ss_dssp ETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEEEEEEEEEEEETTEEEE-EEEEEEEECCH
T ss_pred eCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCccEEEEEEeeEEEEcCceEE-EEEEEEEecCC
Confidence 9999999999999962 358999999999999999999999999999999999999999999999999 99999998766
Q ss_pred cccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCC--CCcEEEECccCCCCCccceeEEecc
Q 010235 187 LTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE--EGGEIVFGGMDPDHYKGEHTYVPVT 264 (514)
Q Consensus 187 ~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~--~~G~L~fGg~d~~~~~g~l~~~p~~ 264 (514)
..|....++||||||++..+.....|++++|++||+|++++||+||++..+.. ..|+|+|||+|+++|.|++.|+|+.
T Consensus 160 ~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~ 239 (383)
T 2x0b_A 160 LPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI 239 (383)
T ss_dssp HHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBS
T ss_pred cccccCCCceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcC
Confidence 55666788999999999988777889999999999999999999998864321 3799999999999999999999999
Q ss_pred CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccC
Q 010235 265 QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKD 344 (514)
Q Consensus 265 ~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~ 344 (514)
+.++|.|.+++|.|+++.+. +.....+||||||+++++|.+++++|.+++++.
T Consensus 240 ~~~~w~v~l~~i~v~~~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~-------------------------- 292 (383)
T 2x0b_A 240 KTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLMEALGAK-------------------------- 292 (383)
T ss_dssp STTSCEEEECEEEESSCCCB-STTCEEEEECTTCSSEEECHHHHHHHHHHHTCE--------------------------
T ss_pred CCceEEEEEeEEEeCCceEE-cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCc--------------------------
Confidence 99999999999999998753 567789999999999999999999999999765
Q ss_pred CccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCC
Q 010235 345 EPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS 424 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
+
T Consensus 293 ------------------------------------------------------------------------------~- 293 (383)
T 2x0b_A 293 ------------------------------------------------------------------------------K- 293 (383)
T ss_dssp ------------------------------------------------------------------------------E-
T ss_pred ------------------------------------------------------------------------------c-
Confidence 0
Q ss_pred CCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECC
Q 010235 425 PMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYS 504 (514)
Q Consensus 425 ~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~ 504 (514)
..|.|.++|+.+..+|+|+|+|+|++|+|+|++|+++..+.+...|+++|++.+.+++.++.||||++|||++|+|||++
T Consensus 294 ~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~ 373 (383)
T 2x0b_A 294 RLFDYVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRR 373 (383)
T ss_dssp CSSCEEEEGGGTTTCCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETT
T ss_pred cCCcEEEeccccccCceEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECC
Confidence 24578999998889999999999999999999999986654456899999987765555678999999999999999999
Q ss_pred CCeEEEEEcC
Q 010235 505 NMRVGFAEAA 514 (514)
Q Consensus 505 ~~riGfa~a~ 514 (514)
|+|||||+++
T Consensus 374 ~~rIGfA~a~ 383 (383)
T 2x0b_A 374 NNRIGFALAR 383 (383)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEeEEEcC
Confidence 9999999986
No 4
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.6e-63 Score=508.35 Aligned_cols=331 Identities=48% Similarity=0.885 Sum_probs=292.1
Q ss_pred ccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce
Q 010235 77 ADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA 156 (514)
Q Consensus 77 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~ 156 (514)
...+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|+
T Consensus 12 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs 90 (351)
T 1tzs_A 12 SAKEPLINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT-SPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS 90 (351)
T ss_dssp --CCTTGGGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE
T ss_pred ccceeceecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC-ccccCCCCcCCcccCcceEECCCEEEEEeCCCC
Confidence 3458999988999999999999999999999999999999999996 468998999999999999999999999999999
Q ss_pred EEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCC
Q 010235 157 ISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNA 236 (514)
Q Consensus 157 ~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~ 236 (514)
+.|.+++|+|+|++..++++.||++....+..+....++||||||++..+.....+++++|++||.|++++||+||.+..
T Consensus 91 ~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~ 170 (351)
T 1tzs_A 91 LSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNP 170 (351)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC
T ss_pred eEEEEEEeEEEECCeEECCeEEEEEEeccccccccCCCceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 99999999999999999999999998776655556678999999999888777788999999999999999999998874
Q ss_pred CCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhc
Q 010235 237 DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316 (514)
Q Consensus 237 ~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~ 316 (514)
+....|.|+|||+|+++|.|++.|+|+...++|.|.+++|+|++..+. +.....++|||||+++++|.+++++|.++++
T Consensus 171 ~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~ 249 (351)
T 1tzs_A 171 EGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMF-CSEGCQAIVDTGTSLITGPSDKIKQLQNAIG 249 (351)
T ss_dssp --CTTCEEEETSCCGGGBCSCCEEEECSEETTEEEEEEEEEETTEEEE-CTTCEEEEECTTCSSEEECHHHHHHHHHHHT
T ss_pred CCCCCCEEEECCCCHHHcCCceEEEecCCCceEEEEeCEEEECCceEE-cCCCceEEeccCCcceeCCHHHHHHHHHHhC
Confidence 333479999999999999999999999988999999999999998763 4567899999999999999999999999997
Q ss_pred CccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHH
Q 010235 317 ATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVV 396 (514)
Q Consensus 317 ~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+..
T Consensus 250 ~~~----------------------------------------------------------------------------- 252 (351)
T 1tzs_A 250 AAP----------------------------------------------------------------------------- 252 (351)
T ss_dssp CEE-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 651
Q ss_pred HHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEe
Q 010235 397 WMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSA 476 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~ 476 (514)
.. |.|.++|+.+..+|+|+|+|+|++++|++++|+++..+.+...|+++|+.
T Consensus 253 ---------------------------~~-g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~ 304 (351)
T 1tzs_A 253 ---------------------------VD-GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQG 304 (351)
T ss_dssp ---------------------------CS-SSEEECGGGGGGSCCEEEEETTEEEEECTTTSEECC-----CCEEESEEE
T ss_pred ---------------------------cC-CeEEEeCCCCccCCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEE
Confidence 12 56889999877899999999999999999999988654334689999987
Q ss_pred cccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 477 LDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 477 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus 305 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~ 342 (351)
T 1tzs_A 305 LDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPAV 342 (351)
T ss_dssp CCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred CCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEECC
Confidence 76543455689999999999999999999999999985
No 5
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=4.9e-63 Score=500.68 Aligned_cols=322 Identities=44% Similarity=0.825 Sum_probs=289.6
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccc
Q 010235 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G 155 (514)
+...+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 2 ~~~~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G 80 (323)
T 3cms_A 2 EVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTG 80 (323)
T ss_dssp CCEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE
T ss_pred CcceeeeEeccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCC-cccccCCCCCCCccCCCeEECCcEEEEEeCCC
Confidence 35678999999999999999999999999999999999999999995 56899899999999999999999999999999
Q ss_pred eEEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCC
Q 010235 156 AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRN 235 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~ 235 (514)
++.|.+++|+|+|++.+++++.||++....+..|....++||||||++..+.....+++++|++||.|.+++||+||.+.
T Consensus 81 s~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~ 160 (323)
T 3cms_A 81 SMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRN 160 (323)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTT
T ss_pred CeEEEEEEEEEEECCeEEeccEEEEEEecccccccccCCceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCC
Confidence 99999999999999999999999999987654455567899999999998877788999999999999999999999886
Q ss_pred CCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHh
Q 010235 236 ADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAI 315 (514)
Q Consensus 236 ~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l 315 (514)
.. .|.|+|||+|++++.|++.|+|+.+.++|.|.+++|+|+++.+. ......++|||||+++++|++++++|.+++
T Consensus 161 ~~---~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~ 236 (323)
T 3cms_A 161 GQ---ESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVA-CEGGCQAILDTGTSKLVGPSSDILNIQQAI 236 (323)
T ss_dssp SS---CEEEEESCCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE-STTCEEEEECTTCCSEEECHHHHHHHHHHH
T ss_pred CC---CEEEEECCCChhhccCceEEEECccCCeEEEEEeeEEECCEEee-cCCCcEEEEecCCccEeCCHHHHHHHHHHh
Confidence 32 49999999999999999999999999999999999999998875 345789999999999999999999999999
Q ss_pred cCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHH
Q 010235 316 GATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAV 395 (514)
Q Consensus 316 ~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
++..
T Consensus 237 ~~~~---------------------------------------------------------------------------- 240 (323)
T 3cms_A 237 GATQ---------------------------------------------------------------------------- 240 (323)
T ss_dssp TCEE----------------------------------------------------------------------------
T ss_pred CCee----------------------------------------------------------------------------
Confidence 7651
Q ss_pred HHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeE
Q 010235 396 VWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFS 475 (514)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~ 475 (514)
...+.|.++|+.+..+|+|+|+|+|++++|++++|+++ ....|+++|+
T Consensus 241 ----------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~----~~~~C~~~i~ 288 (323)
T 3cms_A 241 ----------------------------NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQ 288 (323)
T ss_dssp ----------------------------ETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEEE----ETTEEEESEE
T ss_pred ----------------------------cCCCcEEEECCCCccCceEEEEECCEEEEECHHHhccC----CCCEEEEEEE
Confidence 12356889999888999999999999999999999998 2368999888
Q ss_pred ecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 476 ALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 476 ~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
..+ .++.||||++|||++|+|||++++|||||+++
T Consensus 289 ~~~----~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 289 SEN----HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp EC-------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred eCC----CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 643 34689999999999999999999999999985
No 6
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=3.1e-63 Score=506.00 Aligned_cols=332 Identities=43% Similarity=0.863 Sum_probs=296.8
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCC-CcccCCCCcccCCCCCcceeCCceEEEEecc
Q 010235 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
+...+||.|+.|.+|+++|+||||||++.|++||||+++||+|..|.. ...|..++.|+|++|+||+..++.|.+.|++
T Consensus 6 ~~~~~~l~n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~ 85 (341)
T 3k1w_A 6 TTSSVILTNYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYST 85 (341)
T ss_dssp BCEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETT
T ss_pred CCccccceEccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECC
Confidence 566799999999999999999999999999999999999999999963 3479889999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecC
Q 010235 155 GAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNR 234 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~ 234 (514)
|++.|.+++|+|+|++..+ ++.||++.......+....++||||||++..+.....+++++|++||.|++++||+||.+
T Consensus 86 gs~~G~~~~D~v~ig~~~v-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~ 164 (341)
T 3k1w_A 86 GTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR 164 (341)
T ss_dssp EEEEEEEEEEEEEETTEEE-EEEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECC
T ss_pred cEEEEEEEEEEEEECCcee-eEEEEEEEEccccccccCCcceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeC
Confidence 9999999999999999999 999999998765445566789999999998887777889999999999999999999988
Q ss_pred CC--CCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHH
Q 010235 235 NA--DEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 235 ~~--~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
.. +....|.|+|||+|+++|.|+++|+|+.+.++|.|.+++|.+++..+. ......++|||||+++++|++++++|+
T Consensus 165 ~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~~~~~~i~ 243 (341)
T 3k1w_A 165 DSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLL-CEDGCLALVDTGASYISGSTSSIEKLM 243 (341)
T ss_dssp CC-----CCEEEEESSCCGGGEEEEEEEEECSSTTSCEEEECCEEETTEEEE-CTTCEEEEECTTCSSEEECHHHHHHHH
T ss_pred CCCcCCCCCCEEEECccChHHccCceEEEecCCCCEEEEEEeEEEECCEEee-cCCCCEEEEECCCChhcCCHHHHHHHH
Confidence 64 223479999999999999999999999999999999999999998753 456789999999999999999999999
Q ss_pred HHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhH
Q 010235 313 HAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCE 392 (514)
Q Consensus 313 ~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++++..
T Consensus 244 ~~~~~~~------------------------------------------------------------------------- 250 (341)
T 3k1w_A 244 EALGAKK------------------------------------------------------------------------- 250 (341)
T ss_dssp HHHTCEE-------------------------------------------------------------------------
T ss_pred HHcCCee-------------------------------------------------------------------------
Confidence 9997651
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeee
Q 010235 393 MAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
...| |.++|+....+|+|+|+|+|++++|++++|+++..+.+...|++
T Consensus 251 -------------------------------~~~g-~~~~C~~~~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~C~~ 298 (341)
T 3k1w_A 251 -------------------------------RLFD-YVVKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTL 298 (341)
T ss_dssp -------------------------------CSSC-EEEEGGGGGGCCCEEEEETTEEEEECHHHHBCCSCCCTTSEEEB
T ss_pred -------------------------------cCCC-eEEeCCCCCcCCcEEEEECCEEEEECHHHheeEccCCCCCeEEe
Confidence 1235 99999987789999999999999999999998865544678999
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+|+..+.++..++.||||++|||++|+|||++++|||||+++
T Consensus 299 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 299 AIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp SEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 999876544556789999999999999999999999999985
No 7
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=9.5e-63 Score=499.89 Aligned_cols=326 Identities=44% Similarity=0.839 Sum_probs=291.4
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceE
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI 157 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~ 157 (514)
..+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++
T Consensus 3 ~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~ 81 (329)
T 1dpj_A 3 HDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG-SLACFLHSKYDHEASSSYKANGTEFAIQYGTGSL 81 (329)
T ss_dssp EEEECEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEE
T ss_pred cceeeeecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCC-CcccCCcCcCCcccCcCeEECCcEEEEEECCceE
Confidence 458999999999999999999999999999999999999999996 3469888999999999999999999999999999
Q ss_pred EEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCC
Q 010235 158 SGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNAD 237 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~ 237 (514)
.|.+++|+|+|++..++++.||+++...+..|....++||||||++..+.....+++++|++||+|++++||+||.+...
T Consensus 82 ~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~ 161 (329)
T 1dpj_A 82 EGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSK 161 (329)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGG
T ss_pred EEEEEEEEEEECCeEECCeEEEEEEecCccccccCCcceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCC
Confidence 99999999999999999999999998665345556789999999998877677889999999999999999999987531
Q ss_pred -CCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhc
Q 010235 238 -EEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIG 316 (514)
Q Consensus 238 -~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~ 316 (514)
....|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|++++..+. .....++|||||+++++|++++++|.++++
T Consensus 162 ~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~ 239 (329)
T 1dpj_A 162 DTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAE--LESHGAAIDTGTSLITLPSGLAEMINAEIG 239 (329)
T ss_dssp TCSSSEEEEESSCCGGGEEEEEEEEECSSBTTBEEEEEEEEETTEEEE--CSSCEEEECTTCSCEEECHHHHHHHHHHHT
T ss_pred CCCCCcEEEEcCCChhhcCCceEEEEcCCCceEEEEeeeEEECCeEec--CCCccEEeeCCCCcEECCHHHHHHHHHHhC
Confidence 22479999999999999999999999999999999999999998764 356789999999999999999999999997
Q ss_pred CccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHH
Q 010235 317 ATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVV 396 (514)
Q Consensus 317 ~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+..
T Consensus 240 ~~~----------------------------------------------------------------------------- 242 (329)
T 1dpj_A 240 AKK----------------------------------------------------------------------------- 242 (329)
T ss_dssp CEE-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 540
Q ss_pred HHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEe
Q 010235 397 WMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSA 476 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~ 476 (514)
...+.|.++|+....+|.|+|+|+|.+++|++++|+++.+ +.|+++|+.
T Consensus 243 ---------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----~~C~~~~~~ 291 (329)
T 1dpj_A 243 ---------------------------GWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITP 291 (329)
T ss_dssp ---------------------------CTTSSEEECGGGGGGCCCEEEEETTEEEEECTTTSEEEET----TEEEECEEE
T ss_pred ---------------------------CCCCeEEEECCCCCcCCcEEEEECCEEEEECHHHhEecCC----CEEEEEEEe
Confidence 1246789999987789999999999999999999999754 589999987
Q ss_pred cccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 477 LDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 477 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.+.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus 292 ~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 292 MDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp CCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred cccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 76543455789999999999999999999999999985
No 8
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=4.7e-63 Score=500.31 Aligned_cols=319 Identities=45% Similarity=0.831 Sum_probs=284.3
Q ss_pred EEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEE
Q 010235 79 IVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~ 158 (514)
.+||.|+.|.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.
T Consensus 2 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~ 80 (320)
T 4aa9_A 2 REPLTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCK-SNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGSME 80 (320)
T ss_dssp ------CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEE
T ss_pred CccceeccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCC-ccccCCCCCCCCCCCcCeEcCCcEEEEEECCcEEE
Confidence 47999999999999999999999999999999999999999996 56898899999999999999999999999999999
Q ss_pred EEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCC
Q 010235 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|+|++..++++.||++....+..+....++||||||++..+.....+++++|++||.|++++||+||.+.
T Consensus 81 G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~--- 157 (320)
T 4aa9_A 81 GFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRN--- 157 (320)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSS---
T ss_pred EEEEEEEEEECCEeecCeEEEEEEEcccccccccCcccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCCC---
Confidence 99999999999999999999999987765555667899999999998877778899999999999999999999985
Q ss_pred CCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCc
Q 010235 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (514)
Q Consensus 239 ~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~ 318 (514)
...|.|+|||+|++++.|++.|+|+.+.++|.|.+++|.++++.+. ......++|||||+++++|++++++|.+++++.
T Consensus 158 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~ 236 (320)
T 4aa9_A 158 GQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAVA-CVGGCQAILDTGTSVLFGPSSDILKIQMAIGAT 236 (320)
T ss_dssp SSCCEEEETCCCGGGEEEEEEEEECSSBTTBEEEECEEEETTEEEE-STTCEEEEECTTCSSEEEEHHHHHHHHHHTTCE
T ss_pred CCCeEEEEcccCHHHccCceEEEEcccCCceEEEEeEEEECCEEec-cCCCcEEEEECCCCcEECCHHHHHHHHHHhCCc
Confidence 2389999999999999999999999999999999999999998875 345789999999999999999999999999765
Q ss_pred cccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHH
Q 010235 319 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.
T Consensus 237 ~------------------------------------------------------------------------------- 237 (320)
T 4aa9_A 237 E------------------------------------------------------------------------------- 237 (320)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecc
Q 010235 399 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...|.|.++|+....+|+|+|+|+|++++|++++|+.+. ...|+++|+..
T Consensus 238 -------------------------~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~----~~~C~~~i~~~- 287 (320)
T 4aa9_A 238 -------------------------NRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTSKD----QGFCTSGFQGD- 287 (320)
T ss_dssp -------------------------CTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEEEE----TTEEEESEEEE-
T ss_pred -------------------------cCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhccCC----CCeEEEEEEcC-
Confidence 124679999998778999999999999999999999762 36899988752
Q ss_pred cCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 479 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
..++.||||++|||++|+|||++++|||||+|+
T Consensus 288 ---~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 288 ---NNSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp ---TTCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred ---CCCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 234679999999999999999999999999986
No 9
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=1e-62 Score=498.63 Aligned_cols=322 Identities=43% Similarity=0.790 Sum_probs=290.0
Q ss_pred EEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEE
Q 010235 79 IVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~ 158 (514)
.+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.
T Consensus 3 ~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~ 81 (324)
T 1am5_A 3 TEQMKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS-AQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMR 81 (324)
T ss_dssp EEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEEE
T ss_pred eeeeecCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCC-cccccCCCcCCCccCCCeEeCCcEEEEEECCCCeE
Confidence 47999999999999999999999999999999999999999996 45798899999999999999999999999999999
Q ss_pred EEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCC
Q 010235 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|++++..++++.||++....+..+....++||||||++..+.....+++++|++||.|++++||+||.+...
T Consensus 82 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~- 160 (324)
T 1am5_A 82 GILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGA- 160 (324)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTC-
T ss_pred EEEEECceeECCcEEcccEEEEEEecccccccCCCCceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecCCCC-
Confidence 9999999999999999999999998766545566789999999998887677889999999999999999999988632
Q ss_pred CCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCc
Q 010235 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (514)
Q Consensus 239 ~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~ 318 (514)
..|.|+|||+|++++.|++.|+|+.+.++|.|.+++|+++++.+. +.+ ..++|||||+++++|++++++|.+++++.
T Consensus 161 -~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~ 237 (324)
T 1am5_A 161 -NGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAA-CEG-CQAIVDTGTSKIVAPVSALANIMKDIGAS 237 (324)
T ss_dssp -SCEEEEESSCCGGGBCSCCEEEEEEEETTEEEEECEEEETTEECC-CCC-EEEEECTTCSSEEECTTTHHHHHHHHTCE
T ss_pred -CCcEEEECccCHHHcCCceEEEecCCCcEEEEEEeEEEECCceee-ccC-ceEEEecCCccEECCHHHHHHHHHHhCCc
Confidence 379999999999999999999999988999999999999998763 333 88999999999999999999999988642
Q ss_pred cccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHH
Q 010235 319 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
T Consensus 238 -------------------------------------------------------------------------------- 237 (324)
T 1am5_A 238 -------------------------------------------------------------------------------- 237 (324)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecc
Q 010235 399 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...|.|.++|+.+..+|+|+|+|+|.+++|++++|+++. ...|+++|+..+
T Consensus 238 -------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~ 288 (324)
T 1am5_A 238 -------------------------ENQGEMMGNCASVQSLPDITFTINGVKQPLPPSAYIEGD----QAFCTSGLGSSG 288 (324)
T ss_dssp -------------------------ECCCCEECCTTSSSSSCCEEEEETTEEEEECHHHHEEES----SSCEEECEEECC
T ss_pred -------------------------ccCCcEEEeCCCcccCCcEEEEECCEEEEECHHHhcccC----CCeEEEEEEECc
Confidence 013568899998889999999999999999999999885 368999998776
Q ss_pred cCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 479 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.+.+.++.||||++|||++|+|||++++|||||+++
T Consensus 289 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 289 VPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp SCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred cCCCCCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 544445789999999999999999999999999986
No 10
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=1.3e-62 Score=498.79 Aligned_cols=325 Identities=44% Similarity=0.851 Sum_probs=290.6
Q ss_pred EEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEE
Q 010235 79 IVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAIS 158 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~ 158 (514)
.+||. +.+.+|+++|.||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|++.
T Consensus 4 ~~~l~-~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs~~ 81 (329)
T 1htr_B 4 YEPMA-YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLT 81 (329)
T ss_dssp CCGGG-GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-SHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEEEE
T ss_pred eeeeE-EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCCCCcCCCccCCCeEECCcEEEEEeCCCCeE
Confidence 47888 88999999999999999999999999999999999996 45798899999999999999999999999999999
Q ss_pred EEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCC
Q 010235 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADE 238 (514)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~ 238 (514)
|.+++|+|+|++..++++.||++....+..+....++||||||++..+.....+++++|++||.|++++||+||.+....
T Consensus 82 G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~ 161 (329)
T 1htr_B 82 GFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGS 161 (329)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSS
T ss_pred EEEEeeeEEEcceEECceEEEEEEEccccccccCCCceEEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCC
Confidence 99999999999999999999999987665455667899999999988877778899999999999999999999886421
Q ss_pred CCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCc
Q 010235 239 EEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (514)
Q Consensus 239 ~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~ 318 (514)
..|.|+|||+|++++.|++.|+|+.+.++|.|.+++|+|+++.+..+.....++|||||+++++|++++++|.+++++.
T Consensus 162 -~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~ 240 (329)
T 1htr_B 162 -SGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQ 240 (329)
T ss_dssp -EEEEEEESSCCGGGEEEEEEEEEBCSSSSCEEEECEEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCE
T ss_pred -CCcEEEEcccCHHHcCCceEEEECCCCceEEEEEeEEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCe
Confidence 3799999999999999999999999899999999999999987643456789999999999999999999999999765
Q ss_pred cccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHH
Q 010235 319 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
.
T Consensus 241 ~------------------------------------------------------------------------------- 241 (329)
T 1htr_B 241 E------------------------------------------------------------------------------- 241 (329)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecc
Q 010235 399 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
...|.|.++|+.+..+|+|+|+|+|++++|++++|+++.. +.|+++|+..+
T Consensus 242 -------------------------~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~~----g~C~~~~~~~~ 292 (329)
T 1htr_B 242 -------------------------DEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTY 292 (329)
T ss_dssp -------------------------CTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHEEECS----SCEEESEEEEC
T ss_pred -------------------------cCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhcccCC----CEEEEEEEECC
Confidence 1235688999987789999999999999999999998854 38999998766
Q ss_pred cCCCCCC-eeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 479 VAPPRGP-LWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 479 ~~~~~~~-~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.+.+.++ .||||++|||++|+|||++++|||||+++
T Consensus 293 ~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 293 LSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp CCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 4434455 89999999999999999999999999985
No 11
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=3.1e-62 Score=513.05 Aligned_cols=322 Identities=32% Similarity=0.577 Sum_probs=288.2
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEecc
Q 010235 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
.....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. +..|..++.|+|++|+||+..++.+.+.|++
T Consensus 124 ~~~~~~pL~n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~-s~~C~~~~~ydps~SsT~~~~~~~f~i~Ygd 202 (451)
T 3qvc_A 124 SEFDNVELKDLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT-SESCESKNHYDSSKSKTYEKDDTPVKLTSKA 202 (451)
T ss_dssp ---CCCCGGGGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCC-SGGGTTSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred ccCCccceeecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCC-ccccCCCCCCCCCCCcccccCCCEEEEEECC
Confidence 356678999999999999999999999999999999999999999996 5689999999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecccEEEEEEe----eCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEE
Q 010235 155 GAISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSF 230 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~~~~~~fg~~~~----~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl 230 (514)
|++.|.+++|+|++|+..++ +.||+++. .++ +....++||||||++..+.....+++++|++||.|++++||+
T Consensus 203 Gs~~G~~~~Dtv~igg~~v~-~~Fg~a~~t~~~~~~--f~~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~ 279 (451)
T 3qvc_A 203 GTISGIFSKDLVTIGKLSVP-YKFIEMTEIVGFEPF--YSESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSI 279 (451)
T ss_dssp EEEEEEEEEEEEEETTEEEE-EEEEEEEEEEECTTH--HHHSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEE
T ss_pred CEEEEEEEEEEEEECCEEEE-EEEEEEEeccccCCC--ccCCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEE
Confidence 99999999999999999999 99999987 443 455567999999999888777789999999999999999999
Q ss_pred EecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHH
Q 010235 231 WFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQ 310 (514)
Q Consensus 231 ~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~ 310 (514)
||.+.. ...|.|+|||+|++++.|++.|+|+.+.++|.|.++ |.+++. +.....++|||||+++++|++++++
T Consensus 280 ~L~~~~--~~~G~l~fGgiD~s~y~G~l~~~pv~~~~~w~v~l~-I~Vgg~----~~~~~~aiiDSGTt~i~lP~~~~~~ 352 (451)
T 3qvc_A 280 YLPPEN--KNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLD-VHFGNV----SSKKANVILDSATSVITVPTEFFNQ 352 (451)
T ss_dssp ECCTTC--TTEEEEEESSCCGGGEEEEEEEEECSSTTSSEEEEE-EEETTE----EEEEEEEEECTTBSSEEECHHHHHH
T ss_pred EEcCCC--CCCCEEEECCcchhhcCCceEEEEcccCCeeEEEEE-EEECCc----cCCCceEEEeCCCccccCCHHHHHH
Confidence 999873 237999999999999999999999999999999999 999998 2356789999999999999999999
Q ss_pred HHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccch
Q 010235 311 VNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCST 390 (514)
Q Consensus 311 l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
|.+++++..
T Consensus 353 i~~~i~a~~----------------------------------------------------------------------- 361 (451)
T 3qvc_A 353 FVESASVFK----------------------------------------------------------------------- 361 (451)
T ss_dssp HHTTTTCEE-----------------------------------------------------------------------
T ss_pred HHHHcCCee-----------------------------------------------------------------------
Confidence 999887651
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcee
Q 010235 391 CEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQC 470 (514)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C 470 (514)
....|.|.+||+ +..+|+|+|+|+|.+++|||++|+.+..+.+...|
T Consensus 362 --------------------------------~~~~g~y~v~C~-~~~~P~itf~fgg~~i~lp~~~yi~~~~~~~~~~C 408 (451)
T 3qvc_A 362 --------------------------------VPFLSLYVTTCG-NTKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALC 408 (451)
T ss_dssp --------------------------------CTTSSCEEEETT-CTTCCCEEEEETTEEEEECHHHHEEECTTTSTTEE
T ss_pred --------------------------------cCCCCeEEeeCC-cCcCCcEEEEECCEEEEEcHHHheeecccCCCCeE
Confidence 012467999999 78899999999999999999999998765455789
Q ss_pred eeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 471 ISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 471 ~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+++|++.+. .++.||||++|||++|+|||++++|||||+++
T Consensus 409 ~~~i~~~~~---~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 409 MLNIVPIDL---EKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EECEEECCC---STTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCC---CCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 999986542 15689999999999999999999999999985
No 12
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=6.2e-62 Score=501.66 Aligned_cols=321 Identities=34% Similarity=0.685 Sum_probs=287.3
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccc
Q 010235 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G 155 (514)
....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 50 ~~~~~pl~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G 128 (375)
T 1miq_A 50 ENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN-SSGCSIKNLYDSSKSKSYEKDGTKVDITYGSG 128 (375)
T ss_dssp TTBCCCGGGTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCC-SSGGGGSCCBCGGGCTTCEEEEEEEEEEETTE
T ss_pred CcceEEcccCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCC-cccccCCCcCCCccCCceEECCcEEEEEeCCC
Confidence 44568999988999999999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred eEEEEEEEEEEEECceeecccEEEEEEe----eCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEE
Q 010235 156 AISGFFSEDHVKIGDLVVKDQEFIEATR----EPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFW 231 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~~~~~~fg~~~~----~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~ 231 (514)
++.|.+++|+|+||+..+++ .||++.. .. .|....++||||||++..+.....+++++|++||.|++++||+|
T Consensus 129 s~~G~~~~Dtv~ig~~~v~~-~Fg~~~~~~~~~~--~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~ 205 (375)
T 1miq_A 129 TVKGFFSKDLVTLGHLSMPY-KFIEVTDTDDLEP--IYSSVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFY 205 (375)
T ss_dssp EEEEEEEEEEEEETTEEEEE-EEEEEEECGGGTT--HHHHSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEE
T ss_pred eEEEEEEEEEEEEcCceECc-EEEEEEecccccc--ccccCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEE
Confidence 99999999999999999999 9999998 43 35556789999999998887778899999999999999999999
Q ss_pred ecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHH
Q 010235 232 FNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQV 311 (514)
Q Consensus 232 l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l 311 (514)
|.+.. ...|.|+|||+|+++|.|++.|+|+.+.++|.|.++ |.|+++.+ ....++|||||+++++|.+++++|
T Consensus 206 L~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~-i~v~g~~~----~~~~aiiDSGTs~~~lP~~~~~~l 278 (375)
T 1miq_A 206 LPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----EKANVIVDSGTTTITAPSEFLNKF 278 (375)
T ss_dssp CCTTC--TTEEEEEESSCCGGGEEEEEEEEEBSSSSSSEEEEE-EEETTEEE----EEEEEEECTTBSSEEECHHHHHHH
T ss_pred ecCCC--CCCeEEEEcccCHHHcCCceEEEecCCCceEEEEEE-EEECCEEc----ccceEEecCCCccEEcCHHHHHHH
Confidence 98863 248999999999999999999999998999999999 99999876 457899999999999999999999
Q ss_pred HHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchh
Q 010235 312 NHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTC 391 (514)
Q Consensus 312 ~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+++++..
T Consensus 279 ~~~~~~~~------------------------------------------------------------------------ 286 (375)
T 1miq_A 279 FANLNVIK------------------------------------------------------------------------ 286 (375)
T ss_dssp HHHHTCEE------------------------------------------------------------------------
T ss_pred HHHhCCcc------------------------------------------------------------------------
Confidence 99997640
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceee
Q 010235 392 EMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCI 471 (514)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~ 471 (514)
+...|.|.++|+. ..+|+|+|+|+|++++|+|++|+++..+.+...|+
T Consensus 287 -------------------------------~~~~g~~~~~C~~-~~~P~i~f~f~g~~~~l~~~~yi~~~~~~g~~~C~ 334 (375)
T 1miq_A 287 -------------------------------VPFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCM 334 (375)
T ss_dssp -------------------------------CTTSSCEEEETTC-TTCCCEEEECSSCEEEECGGGSEEESSSSSCSEEE
T ss_pred -------------------------------cCCCCeEEEECCC-CCCCcEEEEECCEEEEECHHHhEeeccCCCCCeEE
Confidence 1234678999997 78999999999999999999999986543446899
Q ss_pred eeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 472 SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 472 ~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
++|+..+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 335 ~~~~~~~~~---~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 335 ITMLPVDID---SNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp ESEEECCSS---SSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCC---CCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 999865421 2689999999999999999999999999985
No 13
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=9e-62 Score=508.91 Aligned_cols=322 Identities=33% Similarity=0.648 Sum_probs=287.1
Q ss_pred CccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccc
Q 010235 76 DADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (514)
Q Consensus 76 ~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G 155 (514)
....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|
T Consensus 126 ~~~~~~L~n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~-~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdG 204 (453)
T 2bju_A 126 SNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT-TAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSG 204 (453)
T ss_dssp CSEEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC-STTGGGSCCBCGGGCTTCEEEEEEEEEECSSS
T ss_pred CCCceeeEecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCC-ccccCCCCcCCCccCCceeECCcEEEEEcCCC
Confidence 34679999999999999999999999999999999999999999996 56899999999999999999999999999999
Q ss_pred eEEEEEEEEEEEECceeecccEEEEEEeeC--CcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEec
Q 010235 156 AISGFFSEDHVKIGDLVVKDQEFIEATREP--SLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (514)
Q Consensus 156 ~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~--~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~ 233 (514)
++.|.+++|+|++|+.+++ +.||++.... +..+....++||||||++..+.....|++++|++||.|++++||+||.
T Consensus 205 s~~G~~~~Dtv~ig~~~v~-~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~ 283 (453)
T 2bju_A 205 TVSGFFSKDLVTVGNLSLP-YKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLP 283 (453)
T ss_dssp EEEEEEEEEEEEETTEEEE-EEEEEEEECGGGTTHHHHSSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECC
T ss_pred CeEEEEEEEEEEEeCcEEE-EEEEEEEEecccCccccccCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeC
Confidence 9999999999999999999 9999999876 444555678999999999988777889999999999999999999999
Q ss_pred CCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHH
Q 010235 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~ 313 (514)
+.+ ...|.|+|||+|+++|.|++.|+|+.+.++|.|.++ |.|++ .+ . ....++|||||+++++|++++++|.+
T Consensus 284 ~~~--~~~G~l~fGg~D~~~y~G~l~~~pv~~~~~w~V~l~-I~Vgg-~~--~-~~~~aIiDSGTsl~~lP~~~~~~l~~ 356 (453)
T 2bju_A 284 VHD--KHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLD-AHVGN-IM--L-EKANCIVDSGTSAITVPTDFLNKMLQ 356 (453)
T ss_dssp BTT--TBCEEEEESSCCGGGEEEEEEEEEEEEETTEEEEEE-EEETT-EE--E-EEEEEEECTTCCSEEECHHHHHHHTT
T ss_pred CCC--CCCeEEEECCCCHHHcCCceEEEecCCCceEEEEEE-EEECc-EE--e-ccccEEEcCCCCeEecCHHHHHHHHH
Confidence 862 348999999999999999999999998899999999 99999 33 2 56789999999999999999999988
Q ss_pred HhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHH
Q 010235 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 393 (514)
Q Consensus 314 ~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++++..
T Consensus 357 ~i~~~~-------------------------------------------------------------------------- 362 (453)
T 2bju_A 357 NLDVIK-------------------------------------------------------------------------- 362 (453)
T ss_dssp TSSCEE--------------------------------------------------------------------------
T ss_pred HhCCcc--------------------------------------------------------------------------
Confidence 886540
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCC-CeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeee
Q 010235 394 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMG-ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
...| .|.++|+. ..+|+|+|+|+|.+++|||++|+++..+.+...|++
T Consensus 363 ------------------------------~~~g~~~~v~C~~-~~~P~itf~fgg~~~~l~~~~yi~~~~~~g~~~C~~ 411 (453)
T 2bju_A 363 ------------------------------VPFLPFYVTLCNN-SKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCML 411 (453)
T ss_dssp ------------------------------CTTSSCEEEETTC-TTCCCEEEECSSCEEEECHHHHEEECTTTSTTEEEE
T ss_pred ------------------------------cCCCceEEEecCC-CCCCcEEEEECCEEEEECHHHhEeecccCCCceEEE
Confidence 1235 68999997 789999999999999999999999865434568999
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+|++.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 412 ~~~~~~~---~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 412 NIIGLDF---PVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp CEEECCC---SSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCC---CCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9986542 13589999999999999999999999999975
No 14
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=1.9e-60 Score=489.14 Aligned_cols=327 Identities=28% Similarity=0.507 Sum_probs=287.0
Q ss_pred CCccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEecc
Q 010235 75 GDADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 75 ~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
++...+||.|+.+.+|+++|+||||||++.|+|||||+++||+|..|.....|..++.|+|++|+||+..++.|.+.|++
T Consensus 5 g~~~~~~l~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~ 84 (361)
T 1mpp_A 5 GSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGT 84 (361)
T ss_dssp CCEEEEEEEETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSS
T ss_pred CccceEEeecCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECC
Confidence 35567899999999999999999999999999999999999999999523479989999999999999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecccEEEEEEeeCC-----cccccccceeeeecccccccCCC------CCcHHHHHHHcCCC
Q 010235 155 GAISGFFSEDHVKIGDLVVKDQEFIEATREPS-----LTFLLAKFDGILGLGFQEISVGK------AVPVWYNMVNQGLV 223 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~-----~~~~~~~~~GilGLg~~~~s~~~------~~~~~~~l~~qg~i 223 (514)
|++.|.+++|+|+|++..++++.||++....+ ..+....++||||||++..+... .++++++|++||.|
T Consensus 85 Gs~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i 164 (361)
T 1mpp_A 85 GGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI 164 (361)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSS
T ss_pred ceEEEEEEEEEEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCC
Confidence 99999999999999999999999999998765 34555678999999998876433 77899999999999
Q ss_pred CCCEEEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCcc----ceEEEeceEEEcCeeeeeecCCceEE-EcCCC
Q 010235 224 NEPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKG----YWQFDMGDVMIDGQTTGFCAGGCAAI-ADSGT 298 (514)
Q Consensus 224 ~~~~FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~----~w~v~l~~i~v~~~~~~~~~~~~~ai-iDSGt 298 (514)
.+++||+||.+. ...|.|+|||+|++++.|++.|+|+.... +|.|.+++|.|+++.+. ......++ |||||
T Consensus 165 ~~~~FS~~l~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~-~~~~~~ai~iDSGT 240 (361)
T 1mpp_A 165 SSPVFSVYMNTN---DGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAV-SFDGAQAFTIDTGT 240 (361)
T ss_dssp SSSEEEEECCCS---SSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEEETTC
T ss_pred CCcEEEEEecCC---CCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEEEEeEEEECCeeec-cCCCCEEEEECCCC
Confidence 999999999875 23799999999999999999999997765 99999999999998764 23457899 99999
Q ss_pred CCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcC
Q 010235 299 SLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHR 378 (514)
Q Consensus 299 t~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (514)
+++++|++++++|++++++..
T Consensus 241 t~~~lP~~~~~~l~~~~~~~~----------------------------------------------------------- 261 (361)
T 1mpp_A 241 NFFIAPSSFAEKVVKAALPDA----------------------------------------------------------- 261 (361)
T ss_dssp CSEEEEHHHHHHHHHHHCTTC-----------------------------------------------------------
T ss_pred CceeCCHHHHHHHHHHhCCcc-----------------------------------------------------------
Confidence 999999999999999997641
Q ss_pred CCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCC-CcEEEEE--C-----CEE
Q 010235 379 ASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSL-PIVSFTI--G-----GKI 450 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~-P~i~f~~--g-----g~~ 450 (514)
+...|.|.++|+.+..+ |.|+|+| + |.+
T Consensus 262 --------------------------------------------~~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~g~~ 297 (361)
T 1mpp_A 262 --------------------------------------------TESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSDTID 297 (361)
T ss_dssp --------------------------------------------EEETTEEEEEHHHHTTCCCEEEEEEECTTCSSCEEE
T ss_pred --------------------------------------------cCCCCcEEEECCCcccCCCcEEEEEEcCCcCCCCeE
Confidence 01245688999876778 9999999 8 899
Q ss_pred EEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 451 FDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 451 ~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
++|++++|+++... +...|+++|+.. .++.||||++|||++|+|||++++|||||+++
T Consensus 298 ~~i~~~~y~~~~~~-~~~~C~~~i~~~-----~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 355 (361)
T 1mpp_A 298 VSVPISKMLLPVDK-SGETCMFIVLPD-----GGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLA 355 (361)
T ss_dssp EEEEGGGGEEECSS-SSCEEEESEEEE-----SSSCCEEEHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EEECHHHhEEecCC-CCCeeEEEEEeC-----CCCCEEEChHHhccEEEEEECCCCEEEEEEcc
Confidence 99999999998543 346899888853 34579999999999999999999999999975
No 15
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=2.6e-60 Score=481.97 Aligned_cols=318 Identities=31% Similarity=0.532 Sum_probs=283.3
Q ss_pred ccEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCccc--CCCCcccCCCCCcceeCCceEEEEecc
Q 010235 77 ADIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYRSGRSSTYKKNGKSADIHYGT 154 (514)
Q Consensus 77 ~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~~~~~~~Y~~ 154 (514)
...+||.|+.+..|+++|+|| ||++.|++||||+++||++..|. ...| ..++.|+|++| ||+..++.|.+.|++
T Consensus 6 ~~~~~l~n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~-~~~C~~~~~~~y~~~~S-T~~~~~~~~~i~Yg~ 81 (330)
T 1yg9_A 6 PLYKLVHVFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECV-GGACVCPNLQKYEKLKP-KYISDGNVQVKFFDT 81 (330)
T ss_dssp CSCSCEEEEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCC-SGGGGSTTCCCCCCSSC-EEEEEEEEEEEETTT
T ss_pred eeEeeeecCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC-CccCcccccCccCCCCC-ceEECCCEEEEEECC
Confidence 344789999899999999999 89999999999999999999996 4579 88899999999 999999999999999
Q ss_pred ceEEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeeccccccc-CCCCCcHHHHHHHcCCCCCCEEEEEec
Q 010235 155 GAISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEIS-VGKAVPVWYNMVNQGLVNEPVFSFWFN 233 (514)
Q Consensus 155 G~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s-~~~~~~~~~~l~~qg~i~~~~FSl~l~ 233 (514)
|++.|.+++|+|+|++..++++.||+++.. +..|....++||||||++..+ ....++++++|++||.| +++||+||.
T Consensus 82 Gs~~G~~~~Dtv~ig~~~~~~~~fg~~~~~-~~~f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i-~~~FS~~l~ 159 (330)
T 1yg9_A 82 GSAVGRGIEDSLTISQLTTSQQDIVLADEL-SQEVCILSADVVVGIAAPGCPNALKGKTVLENFVEENLI-APVFSIHHA 159 (330)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEEE-CTHHHHTTCSEEEECSCTTSCCTTSCCCHHHHHHHTTSS-CSEEEEEEE
T ss_pred ceEEEEEEEEEEEECCEEEcCeEEEEEEEc-ccccccccCceEEEcCcchhccccCCCCHHHHHHhcCCC-CceEEEEEc
Confidence 999999999999999999999999999987 434555678999999999887 66678899999999999 999999998
Q ss_pred CCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHH
Q 010235 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNH 313 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~ 313 (514)
+..+....|.|+|||+|++++.|++.|+|+.+.++|.|.+++|.|+++.+. .....++|||||+++++|++++++|.+
T Consensus 160 ~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~--~~~~~aiiDSGTs~~~lP~~~~~~l~~ 237 (330)
T 1yg9_A 160 RFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVA--PAGTQAIIDTSKAIIVGPKAYVNPINE 237 (330)
T ss_dssp ECTTSCEEEEEEETSCCGGGEEEEEEEEEBSCTTSCCEECSEEEETTEEEE--CTTCEEEECTTCSSEEEEHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCcCHHHccCceEEEECCCCCEEEEEeCeEEECCEEEc--CCCcEEEEecCCccccCCHHHHHHHHH
Confidence 864333379999999999999999999999999999999999999998764 567889999999999999999999999
Q ss_pred HhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHH
Q 010235 314 AIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEM 393 (514)
Q Consensus 314 ~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++++..
T Consensus 238 ~~~~~~-------------------------------------------------------------------------- 243 (330)
T 1yg9_A 238 AIGCVV-------------------------------------------------------------------------- 243 (330)
T ss_dssp HHTCEE--------------------------------------------------------------------------
T ss_pred HhCCcc--------------------------------------------------------------------------
Confidence 997651
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCC--Ce-eecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCcee
Q 010235 394 AVVWMQNQLKQNQTQERILNYVNELCDRLPSPMG--ES-AVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQC 470 (514)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--~~-~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C 470 (514)
...| .| .+||+.+..+|+|+|+|+|++++|++++|+++. ...|
T Consensus 244 ------------------------------~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~~~~y~~~~----~~~C 289 (330)
T 1yg9_A 244 ------------------------------EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNISSQYYIQQN----GNLC 289 (330)
T ss_dssp ------------------------------EECSSCEEEEECGGGGGGSCCEEEEETTEEEEECHHHHEEEE----TTEE
T ss_pred ------------------------------cCCCceEEEEEECCCccccCcEEEEECCEEEEECHHHhcccC----CCcE
Confidence 0123 57 899997778999999999999999999999986 3689
Q ss_pred eeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 471 ISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 471 ~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+++|+.. +.++.||||++|||++|+|||++++|||||+++
T Consensus 290 ~~~i~~~----~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 290 YSGFQPC----GHSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EESEEEE----TTCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeC----CCCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 9988854 234579999999999999999999999999985
No 16
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=4.6e-58 Score=464.55 Aligned_cols=311 Identities=34% Similarity=0.634 Sum_probs=271.4
Q ss_pred eccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEE
Q 010235 84 NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFS 162 (514)
Q Consensus 84 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~ 162 (514)
+..+.+|+++|+||||||++.|++||||+++||+|..|..+ |..++.|+|++|+||+..++.|.+.|++|+ +.|.++
T Consensus 11 ~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c--~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~~G~~~ 88 (325)
T 2apr_A 11 YGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC--GSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILA 88 (325)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC--CTTSCCBCGGGCTTCEEEEEEEEEECTTSCEEEEEEE
T ss_pred cCCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH--hcCCCCCCcccCCCeeeCCCEEEEEECCCCCEEEEEE
Confidence 45588999999999999999999999999999999999743 677889999999999999999999999998 899999
Q ss_pred EEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC-CCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCC
Q 010235 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV-GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 241 (514)
Q Consensus 163 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~-~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~ 241 (514)
+|+|+|++..++++.||++...... |....++||||||++..+. ...++++++|++||+|++++||+||.+.. ....
T Consensus 89 ~D~v~~g~~~v~~~~fg~~~~~~~~-f~~~~~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~-~~~~ 166 (325)
T 2apr_A 89 KDNVNLGGLLIKGQTIELAKREAAS-FASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAK-NGGG 166 (325)
T ss_dssp EEEEEETTEEEEEEEEEEEEEECHH-HHTSSCSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGG-GTCC
T ss_pred EEEEEECCEEECcEEEEEEeccCcc-cccCCCceEEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecCCC-CCCC
Confidence 9999999999999999999886543 4445589999999998764 35678999999999999999999996542 1237
Q ss_pred cEEEECccCCCCCccceeEEecc-CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccc
Q 010235 242 GEIVFGGMDPDHYKGEHTYVPVT-QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (514)
Q Consensus 242 G~L~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~ 320 (514)
|.|+|||+|+++|.|++.|+|+. ..++|.|.+++|+|++ .+ ......++|||||+++++|++++++|++++.+.-
T Consensus 167 G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~-~~--~~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~- 242 (325)
T 2apr_A 167 GEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGT-ST--VASSFDGILDTGTTLLILPNNIAASVARAYGASD- 242 (325)
T ss_dssp EEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETT-EE--EECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEE-
T ss_pred CEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECC-Ee--cCCCceEEEecCCccEECCHHHHHHHHHHHhccc-
Confidence 99999999999999999999996 4789999999999999 33 4567899999999999999999999999986540
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHH
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 243 -------------------------------------------------------------------------------- 242 (325)
T 2apr_A 243 -------------------------------------------------------------------------------- 242 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccC
Q 010235 401 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
...+.|.++|+. ..+|+|+|+|+|.++.||+++|+++.. ...|++.|+..+
T Consensus 243 -----------------------~~~g~~~~~C~~-~~~p~i~f~f~g~~~~ip~~~~~~~~~---~~~C~~~i~~~~-- 293 (325)
T 2apr_A 243 -----------------------NGDGTYTISCDT-SAFKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-- 293 (325)
T ss_dssp -----------------------CSSSCEEECSCG-GGCCCEEEEETTEEEEECGGGGEEEEE---TTEEEESEEEES--
T ss_pred -----------------------CCCCeEEEECCC-CCCCcEEEEECCEEEEECHHHEEEcCC---CCeEEEEEEcCC--
Confidence 011568899984 348999999998899999999998754 368999887532
Q ss_pred CCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 481 PPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.+.||||++|||++|+|||++++|||||+++
T Consensus 294 ---~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 294 ---WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp ---SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ---CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 4579999999999999999999999999985
No 17
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=4.3e-58 Score=465.54 Aligned_cols=312 Identities=30% Similarity=0.463 Sum_probs=268.7
Q ss_pred ccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCccee-CCceEEEEeccce-EEEEEE
Q 010235 85 YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFS 162 (514)
Q Consensus 85 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~~~Y~~G~-~~G~~~ 162 (514)
+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|+|++|+||+. .++.|.+.|++|+ +.|.++
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~ 90 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP-KSSATGHAIYTPSKSSTSKKVSGASWSISYGDGSSSSGDVY 90 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC-ccccCCCCcCCcccCcCceEcCCCeEEEEeCCCCcEEEEEE
Confidence 45788999999999999999999999999999999996 33566788999999999998 6899999999998 899999
Q ss_pred EEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC---CCCCcHHHHHHHcCCCCCCEEEEEecCCCCCC
Q 010235 163 EDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV---GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEE 239 (514)
Q Consensus 163 ~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~---~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 239 (514)
+|+|+|++..++++.||++....+..+....++||||||++..+. ...++++++|+++ |++++||+||.+..
T Consensus 91 ~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~l~~~~--- 165 (329)
T 3c9x_A 91 TDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAFDSGNQVRPHPQKTWFSNAASS--LAEPLFTADLRHGQ--- 165 (329)
T ss_dssp EEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHHTT--SSSSEEEEECCSSS---
T ss_pred EEEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCcccccccCCCCCCCHHHHHHHh--cCCCEEEEEecCCC---
Confidence 999999999999999999998654322235679999999988764 2457899999986 88999999998742
Q ss_pred CCcEEEECccCCCCCccceeEEecc-CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCc
Q 010235 240 EGGEIVFGGMDPDHYKGEHTYVPVT-QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGAT 318 (514)
Q Consensus 240 ~~G~L~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~ 318 (514)
.|.|+|||+|++++.|++.|+|+. ..++|.|.+++|.|+++.+ +.....++|||||+++++|++++++|.+++.+.
T Consensus 166 -~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~--~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a 242 (329)
T 3c9x_A 166 -NGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKL--NRNSIDGIADTGTTLLLLDDNVVDAYYANVQSA 242 (329)
T ss_dssp -CEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCC--CSCCEEEEECTTCCSEEECHHHHHHHHTTCTTC
T ss_pred -CcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEec--cCCCceEEEECCCCcEeCCHHHHHHHHHhCCCc
Confidence 799999999999999999999996 5789999999999999865 356789999999999999999999999887433
Q ss_pred cccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHH
Q 010235 319 GIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWM 398 (514)
Q Consensus 319 ~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
..
T Consensus 243 ~~------------------------------------------------------------------------------ 244 (329)
T 3c9x_A 243 QY------------------------------------------------------------------------------ 244 (329)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EE------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecc
Q 010235 399 QNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALD 478 (514)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~ 478 (514)
....+.|.++|+ ..+|.|+|+|+|+++.||+++|++...+.+...|++.|+..+
T Consensus 245 ------------------------~~~~~~~~~~C~--~~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~ 298 (329)
T 3c9x_A 245 ------------------------DNQQEGVVFDCD--EDLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQSSS 298 (329)
T ss_dssp ------------------------ETTTTEEEEETT--CCCCCEEEEETTEEEEECGGGGEEEESSTTCSEEEESEEECT
T ss_pred ------------------------cCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeeccCCCCCeEEEEEEcCC
Confidence 012456889998 579999999999999999999998754333478999887532
Q ss_pred cCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEc
Q 010235 479 VAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 513 (514)
Q Consensus 479 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a 513 (514)
..+.||||++|||++|+|||++++|||||+.
T Consensus 299 ----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 299 ----GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp ----TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred ----CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 3468999999999999999999999999984
No 18
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=6e-58 Score=464.48 Aligned_cols=310 Identities=29% Similarity=0.466 Sum_probs=266.2
Q ss_pred cCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCccee-CCceEEEEeccce-EEEEEEE
Q 010235 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKK-NGKSADIHYGTGA-ISGFFSE 163 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~-~~~~~~~~Y~~G~-~~G~~~~ 163 (514)
.+.+|+++|+||||||++.|++||||+++||+|..|. ...| .++.|+|++|+||+. .++.|.+.|++|+ +.|.+++
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~-~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs~~~G~~~~ 90 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEV-XQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYT 90 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-GGGC--CCCBCGGGCTTCEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC-cccc-ccCccCCccCccceecCCCeEEEEeCCCCcEEEEEEE
Confidence 4788999999999999999999999999999999996 3356 688999999999998 6899999999998 8999999
Q ss_pred EEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC---CCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCC
Q 010235 164 DHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV---GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEE 240 (514)
Q Consensus 164 D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~---~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 240 (514)
|+|+|++..++++.||++....+..+....++||||||++..+. ...++++++|++| |.+++||+||.+..
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~~~~---- 164 (329)
T 1oew_A 91 DTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKAS--LDSPVFTADLGYHA---- 164 (329)
T ss_dssp EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHTTT--SSSSEEEEECCSSS----
T ss_pred EEEEECCEEEeeeEEEEEEecCccccccCCCceEEEeccccccccCcCCCCCHHHHHHHh--ccCcEEEEEccCCC----
Confidence 99999999999999999998754322235679999999988765 2467899999887 88999999998742
Q ss_pred CcEEEECccCCCCCccceeEEecc-CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCcc
Q 010235 241 GGEIVFGGMDPDHYKGEHTYVPVT-QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATG 319 (514)
Q Consensus 241 ~G~L~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~ 319 (514)
.|.|+|||+|+++|.|++.|+|+. ..++|.|.+++|+|+++.+. .....++|||||+++++|++++++|++++.+..
T Consensus 165 ~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~ 242 (329)
T 1oew_A 165 PGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFK--STSIDGIADTGTTLLYLPATVVSAYWAQVSGAK 242 (329)
T ss_dssp CEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCE--EEEEEEEECTTCCSEEECHHHHHHHHTTSTTCE
T ss_pred CeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeecc--CCCceEEEeCCCCCEECCHHHHHHHHHhCCCcE
Confidence 799999999999999999999996 57899999999999998653 346789999999999999999999998884320
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHH
Q 010235 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQ 399 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
+
T Consensus 243 ~------------------------------------------------------------------------------- 243 (329)
T 1oew_A 243 S------------------------------------------------------------------------------- 243 (329)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEeccc
Q 010235 400 NQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDV 479 (514)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~ 479 (514)
....+.|.++|+ ..+|+|+|+|+|++++||+++|+++....+...|++.|+..+
T Consensus 244 -----------------------~~~~g~~~~~C~--~~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~- 297 (329)
T 1oew_A 244 -----------------------SSSVGGYVFPCS--ATLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSA- 297 (329)
T ss_dssp -----------------------ETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEEST-
T ss_pred -----------------------cCCCCEEEEECC--CCCCcEEEEECCEEEEECHHHeeeeecCCCCCeEEEEEEeCC-
Confidence 012467889999 479999999999999999999998754333468999887532
Q ss_pred CCCCCCeeeeChhhhcCeEEEEEC-CCCeEEEEEc
Q 010235 480 APPRGPLWILGDVFMGPYHTVFDY-SNMRVGFAEA 513 (514)
Q Consensus 480 ~~~~~~~~iLG~~fl~~~y~vfD~-~~~riGfa~a 513 (514)
..+.||||++|||++|+|||+ +++|||||++
T Consensus 298 ---~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 298 ---GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp ---TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred ---CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 346899999999999999999 9999999984
No 19
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=5e-57 Score=459.80 Aligned_cols=313 Identities=27% Similarity=0.468 Sum_probs=273.3
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCC--CCCCcccCCCCcccCCCCCcceeCCceEEEEeccc
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSK--CYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG 155 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~--C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G 155 (514)
..+||.|. +..|+++|+||||||++.|++||||+++||++.. |.....|..++.|+|++|+||+..++.|.+.|++|
T Consensus 3 i~~~l~~~-~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g 81 (339)
T 3fv3_A 3 ISLSLINE-GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG 81 (339)
T ss_dssp EEEEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS
T ss_pred eeeEEEcC-CCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC
Confidence 35788886 6789999999999999999999999999999664 65445899899999999999999999999999999
Q ss_pred -eEEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC----------CCCCcHHHHHHHcCCCC
Q 010235 156 -AISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV----------GKAVPVWYNMVNQGLVN 224 (514)
Q Consensus 156 -~~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~----------~~~~~~~~~l~~qg~i~ 224 (514)
.+.|.+++|+|+|++..++++.||++..... .+||||||++..+. ...++++++|++||.|+
T Consensus 82 s~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~-------~~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~ 154 (339)
T 3fv3_A 82 STSQGTWGKDTVTINGVSITGQQIADVTQTSV-------DQGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIR 154 (339)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEEESS-------SSCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCS
T ss_pred ceEEEEEEEEEEEECCEEECceEEEEEEecCC-------CceeEEecCccccccccccccccCccCCcHHHHHHHCCCCC
Confidence 5899999999999999999999999987654 48999999988753 23456999999999999
Q ss_pred CCEEEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccC
Q 010235 225 EPVFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGP 304 (514)
Q Consensus 225 ~~~FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP 304 (514)
+++||+||++.. ...|.|+|||+|+++|.|+++|+|+....+|.|.+++|.+++..+.. ...++|||||+++++|
T Consensus 155 ~~~fsl~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~---~~~~iiDSGtt~~~lP 229 (339)
T 3fv3_A 155 TNAYSLYLNSPS--AETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSF---GDGALLDSGTTLTYFP 229 (339)
T ss_dssp SSEEEEECCCTT--CSEEEEEETEEETTSBSSCCEEEEBCCSSSCEEEEEEEEESSCEEEE---EEEEEECTTBSSEEEC
T ss_pred CceEEEEECCCC--CCCeEEEEeeechHHeecceEEEecccCccEEEEEEEEEECCEeecC---CccEEEeCCCCCEecC
Confidence 999999998763 23799999999999999999999999888999999999999998753 3679999999999999
Q ss_pred HHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCC
Q 010235 305 TTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFH 384 (514)
Q Consensus 305 ~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (514)
++++++|++++++...
T Consensus 230 ~~~~~~i~~~~~~~~~---------------------------------------------------------------- 245 (339)
T 3fv3_A 230 SDFAAQLADKAGARLV---------------------------------------------------------------- 245 (339)
T ss_dssp HHHHHHHHHHHTCEEE----------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCEEc----------------------------------------------------------------
Confidence 9999999999986510
Q ss_pred CcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeec
Q 010235 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVG 463 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~g-g~~~~i~~~~y~~~~~ 463 (514)
..+...+.|.++|+. ..+|.|+|+|+ |.+++||+++|+++..
T Consensus 246 ------------------------------------~~~~~~~~~~~~C~~-~~~p~i~f~f~~g~~~~v~~~~~~~~~~ 288 (339)
T 3fv3_A 246 ------------------------------------QVARDQYLYFIDCNT-DTSGTTVFNFGNGAKITVPNTEYVYQNG 288 (339)
T ss_dssp ------------------------------------EEETTEEEEEECTTC-CCCSEEEEEETTSCEEEEEGGGGEEECS
T ss_pred ------------------------------------cccccCceEEEecCC-CCCCcEEEEECCCCEEEECHHHheeeCC
Confidence 000124568999996 56899999994 8999999999998753
Q ss_pred CCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 464 EGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 464 ~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
...|+++|+. .+.||||++|||++|+|||++++|||||+++
T Consensus 289 ---~~~C~~~i~~-------~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 329 (339)
T 3fv3_A 289 ---DGTCLWGIQP-------SDDTILGDNFLRHAYLLYNLDANTISIAQVK 329 (339)
T ss_dssp ---SSCEEESEEE-------CSSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred ---CCeEEEEEEe-------CCcEEeChHHHhCEEEEEECCCCEEEEEecC
Confidence 2589998874 2469999999999999999999999999985
No 20
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=1.3e-56 Score=457.29 Aligned_cols=314 Identities=26% Similarity=0.426 Sum_probs=270.6
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCC--CCCC------CcccCCCCcccCCCCCcceeCCceEE
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS--KCYF------SIACYFHSKYRSGRSSTYKKNGKSAD 149 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~--~C~~------~~~C~~~~~y~~~~SsT~~~~~~~~~ 149 (514)
..+||.| .+.+|+++|+||||||++.|++||||+++||++. .|.. ...|..++.|+|++|+||+..++.|.
T Consensus 3 v~~~l~~-~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~ 81 (342)
T 2qzx_A 3 VAVTLHN-EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFD 81 (342)
T ss_dssp EEEEEEE-CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEE
T ss_pred eeEEEec-CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEE
Confidence 4578888 4789999999999999999999999999999866 5752 24788889999999999999999999
Q ss_pred EEeccce-EEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCC--CCCcHHHHHHHcCCCCCC
Q 010235 150 IHYGTGA-ISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG--KAVPVWYNMVNQGLVNEP 226 (514)
Q Consensus 150 ~~Y~~G~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~--~~~~~~~~l~~qg~i~~~ 226 (514)
+.|++|+ +.|.+++|+|+|++..++++.||++.... ..+||||||++..+.. ...+++++|++||.|+++
T Consensus 82 i~Yg~Gs~~~G~~~~D~v~~g~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~ 154 (342)
T 2qzx_A 82 IKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANVWSTS-------ARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKA 154 (342)
T ss_dssp EECTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEEC-------SSSCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSS
T ss_pred EEeCCCCeEEEEEEEEEEEECCEEecceEEEEEEecC-------CCcCEEEEccccccCCCccCccHHHHHHHCCCcCcc
Confidence 9999998 68999999999999999999999998753 3589999999877542 355799999999999999
Q ss_pred EEEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 227 VFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 227 ~FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
+||+||.+.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.++++.+.. ...++|||||+++++|++
T Consensus 155 ~Fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~---~~~aiiDSGTt~~~lP~~ 229 (342)
T 2qzx_A 155 AYSLYLNSAE--ASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDA---NTNVLLDSGTTISYFTRS 229 (342)
T ss_dssp EEEEECCCTT--CSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEE---EEEEEECTTCSSEEECHH
T ss_pred EEEEEeCCCC--CCCeEEEECccchhhEecceEEEeccCCceEEEEEeEEEECCEecCC---CcCEEEeCCCCCEEcCHH
Confidence 9999998752 23799999999999999999999999888999999999999988753 367999999999999999
Q ss_pred HHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCc
Q 010235 307 IITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDA 386 (514)
Q Consensus 307 ~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
++++|++++++...
T Consensus 230 ~~~~l~~~~~~~~~------------------------------------------------------------------ 243 (342)
T 2qzx_A 230 IVRNILYAIGAQMK------------------------------------------------------------------ 243 (342)
T ss_dssp HHHHHHHHHTCEEE------------------------------------------------------------------
T ss_pred HHHHHHHHhCCeee------------------------------------------------------------------
Confidence 99999999987510
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEE-CCEEEEeCcccceeeec--
Q 010235 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTI-GGKIFDLTPDQYILKVG-- 463 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~-gg~~~~i~~~~y~~~~~-- 463 (514)
..+...+.|.++|+ .+|.|+|+| +|++++||+++|+++..
T Consensus 244 ----------------------------------~~~~~~~~~~~~C~---~~p~i~f~f~~g~~~~i~~~~~~~~~~~~ 286 (342)
T 2qzx_A 244 ----------------------------------FDSAGNKVYVADCK---TSGTIDFQFGNNLKISVPVSEFLFQTYYT 286 (342)
T ss_dssp ----------------------------------ECTTSCEEEEECTT---CCCEEEEEETTTEEEEEEGGGGEECCBCT
T ss_pred ----------------------------------eccCCCcEEEEECC---CCCcEEEEECCCcEEEEcHHHhccccccc
Confidence 00011236889998 389999999 68999999999998743
Q ss_pred -CCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 464 -EGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 464 -~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
......|++.|+.. +.||||++|||++|++||++++|||||+++
T Consensus 287 ~~~~~~~C~~~i~~~-------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 331 (342)
T 2qzx_A 287 SGKPFPKCEVRIRES-------EDNILGDNFLRSAYVVYNLDDKKISMAPVK 331 (342)
T ss_dssp TSCBCSSEEESEEEC-------SSCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCCCCCccEEEEecC-------CCcEeChHhhhcEEEEEECCCCEEEEEeeC
Confidence 12236899988742 259999999999999999999999999974
No 21
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=8.6e-57 Score=455.23 Aligned_cols=309 Identities=28% Similarity=0.440 Sum_probs=266.7
Q ss_pred cCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-EEEEEEEE
Q 010235 86 MDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA-ISGFFSED 164 (514)
Q Consensus 86 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~-~~G~~~~D 164 (514)
.+.+|+++|+|| ||++.|++||||+++||+|..|. ...|..++.|+|++|+ ++..++.|.+.|++|+ +.|.+++|
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~-~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~~~G~~~~D 87 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELP-SSEQTGHDLYTPSSSA-TKLSGYSWDISYGDGSSASGDVYRD 87 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSC-HHHHTTSCCCBCCSSC-EECTTCBEEEECSSSCEEEEEEEEE
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCC-ccccCCCCCCCchhcC-CccCCCEEEEEeCCCCEEEEEEEEe
Confidence 478899999999 89999999999999999999996 3457778999999999 7778999999999998 89999999
Q ss_pred EEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC---CCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCC
Q 010235 165 HVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV---GKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEG 241 (514)
Q Consensus 165 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~---~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~ 241 (514)
+|+|++..++++.||++....+..+....++||||||++..+. ...++++++|++| |.+++||+||.+.. .
T Consensus 88 ~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~l~~~~----~ 161 (325)
T 1ibq_A 88 TVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKHDA----P 161 (325)
T ss_dssp EEEETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEEEETTE----E
T ss_pred EEEECCEEEcceEEEEEEecCccccccCCCceEEEeCcccccccCcCCCCCHHHHHHHh--cCCcEEEEEecCCC----C
Confidence 9999999999999999998764322235679999999988764 2567899999987 88999999998742 7
Q ss_pred cEEEECccCCCCCccceeEEecc-CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccc
Q 010235 242 GEIVFGGMDPDHYKGEHTYVPVT-QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGI 320 (514)
Q Consensus 242 G~L~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~ 320 (514)
|.|+|||+|+++|.|++.|+|+. ..++|.|.+++|.|+++.+ +.....++|||||+++++|++++++|.+++.+..
T Consensus 162 G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~--~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~- 238 (325)
T 1ibq_A 162 GVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSS--SSSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQ- 238 (325)
T ss_dssp EEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCC--BSCCEEEEECTTCCSEEECHHHHHHHHTTSTTCB-
T ss_pred ceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeec--cCCCceEEEeCCCCcEeCCHHHHHHHHHhCCCce-
Confidence 99999999999999999999996 5789999999999999865 3567899999999999999999999999884320
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHH
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQN 400 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
T Consensus 239 -------------------------------------------------------------------------------- 238 (325)
T 1ibq_A 239 -------------------------------------------------------------------------------- 238 (325)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccC
Q 010235 401 QLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVA 480 (514)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~ 480 (514)
.....+.|.++|+ ..+|+|+|+|+|++++||+++|++...+.+...|++.|+..+
T Consensus 239 ---------------------~~~~~g~~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~-- 293 (325)
T 1ibq_A 239 ---------------------ESYEAGGYVFSCS--TDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQSNS-- 293 (325)
T ss_dssp ---------------------CCSSSSSCEEETT--CCCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEECT--
T ss_pred ---------------------EcCcCCeEEEEcC--CCCCcEEEEECCEEEEECHHHhcccccCCCCCeEEEEEEcCC--
Confidence 0112466889999 479999999999999999999998754333468999887532
Q ss_pred CCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 481 PPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 481 ~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
..+.||||++|||++|+|||++++|||||++|
T Consensus 294 --~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 294 --GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp --TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred --CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 34679999999999999999999999999986
No 22
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=8.2e-57 Score=454.87 Aligned_cols=312 Identities=29% Similarity=0.436 Sum_probs=267.9
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA- 156 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~- 156 (514)
...|+. .+.+|+++|+|| ||++.|++||||+++||+|..|. ...|..++.|+|++|+ ++..++.|.+.|++|+
T Consensus 7 ~~~~~~--~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~-~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~ 80 (323)
T 1izd_A 7 TTNPTS--NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTP-SSERSGHDYYTPGSSA-QKIDGATWSISYGDGSS 80 (323)
T ss_dssp EEEECG--GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC-HHHHTTCCCBCCCTTC-EEEEEEEEEEECTTSCE
T ss_pred eeeEcC--CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCC-cccccCCCCCCccccC-CccCCCeEEEEcCCCCe
Confidence 334553 478899999999 79999999999999999999996 3457788999999999 7778899999999998
Q ss_pred EEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC---CCCCcHHHHHHHcCCCCCCEEEEEec
Q 010235 157 ISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV---GKAVPVWYNMVNQGLVNEPVFSFWFN 233 (514)
Q Consensus 157 ~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~---~~~~~~~~~l~~qg~i~~~~FSl~l~ 233 (514)
+.|.+++|+|+|++.+++++.||+++...+..+....++||||||++..+. ...++++++|++| |.+++||+||.
T Consensus 81 ~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~p~~~~~~~~~l~~~--i~~~~FS~~L~ 158 (323)
T 1izd_A 81 ASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAFSSINTVQPTPQKTFFDNVKSS--LSEPIFAVALK 158 (323)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSCGGGCCCBSSCCCCHHHHHGGG--SSSSEEEEECC
T ss_pred EEEEEEEEEEEECCEEECceEEEEEEeccccccccCCCceEEecCcccccccCCCCCCCHHHHHHHh--ccCcEEEEEcc
Confidence 899999999999999999999999998765322235679999999998775 2567899999987 88999999998
Q ss_pred CCCCCCCCcEEEECccCCCCCccceeEEecc-CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHH
Q 010235 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVT-QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
+.. .|.|+|||+|+++|.|++.|+|+. ..++|.|.+++|+|++ .+ +.....++|||||+++++|++++++|.
T Consensus 159 ~~~----~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~--~~~~~~aiiDSGTs~~~lp~~~~~~i~ 231 (323)
T 1izd_A 159 HNA----PGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DS--SSDSITGIADTGTTLLLLDDSIVDAYY 231 (323)
T ss_dssp TTS----CEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EE--ECCCEEEEECTTCCSEEECHHHHHHHH
T ss_pred CCC----CCEEEECCcCccccccceEEEECCCCCceEEEEECeEEECC-cc--cCCCceEEEeCCCcceeCCHHHHHHHH
Confidence 742 799999999999999999999996 6789999999999999 44 466789999999999999999999999
Q ss_pred HHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhH
Q 010235 313 HAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCE 392 (514)
Q Consensus 313 ~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++.+.. +
T Consensus 232 ~~i~ga~--------------------------------------~---------------------------------- 239 (323)
T 1izd_A 232 EQVNGAS--------------------------------------Y---------------------------------- 239 (323)
T ss_dssp TTSTTCE--------------------------------------E----------------------------------
T ss_pred HhCCCcE--------------------------------------E----------------------------------
Confidence 8884320 0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeee
Q 010235 393 MAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
....|.|.++|+ ..+|+|+|+|+|++++||+++|+++... ...|++
T Consensus 240 ------------------------------~~~~g~~~~~C~--~~~P~i~f~fgg~~~~i~~~~~~~~~~~--~~~C~~ 285 (323)
T 1izd_A 240 ------------------------------DSSQGGYVFPSS--ASLPDFSVTIGDYTATVPGEYISFADVG--NGQTFG 285 (323)
T ss_dssp ------------------------------ETTTTEEEEETT--CCCCCEEEEETTEEEEECHHHHEEEECS--TTEEEE
T ss_pred ------------------------------cCcCCEEEEECC--CCCceEEEEECCEEEecCHHHeEEecCC--CCeEEE
Confidence 012467899999 4799999999999999999999987532 468999
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.|+..+ ..+.||||++|||++|+|||++++|||||++|
T Consensus 286 ~i~~~~----~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1izd_A 286 GIQSNS----GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQA 323 (323)
T ss_dssp SEEECT----TTSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEcCC----CCCcEEEChHHhcCEEEEEECCCCEEEEeeCC
Confidence 887542 34689999999999999999999999999986
No 23
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=1.5e-56 Score=455.13 Aligned_cols=309 Identities=27% Similarity=0.439 Sum_probs=270.1
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCC--CCCC------CcccCCCCcccCCCCCcceeCCceEE
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS--KCYF------SIACYFHSKYRSGRSSTYKKNGKSAD 149 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~--~C~~------~~~C~~~~~y~~~~SsT~~~~~~~~~ 149 (514)
..+||.|. +.+|+++|+||||||++.|++||||+++||++. .|.. ...|..++.|+|++|+||+..++.|.
T Consensus 3 ~~~~l~~~-~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~ 81 (334)
T 1j71_A 3 VPTTLINE-GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFS 81 (334)
T ss_dssp EEEEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEE
T ss_pred eeEEEecC-CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceE
Confidence 45788886 789999999999999999999999999999976 6752 23788889999999999999999999
Q ss_pred EEeccce-EEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCC--CCCcHHHHHHHcCCCCCC
Q 010235 150 IHYGTGA-ISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG--KAVPVWYNMVNQGLVNEP 226 (514)
Q Consensus 150 ~~Y~~G~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~--~~~~~~~~l~~qg~i~~~ 226 (514)
+.|++|+ +.|.+++|+|+|++..++++.||++.... ..+||||||++..+.. ..++++++|++||.|+++
T Consensus 82 i~Yg~Gs~~~G~~~~D~v~~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~ 154 (334)
T 1j71_A 82 IEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTTS-------VDQGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKN 154 (334)
T ss_dssp EEBTTSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSS
T ss_pred EEECCCCEEEEEEEEEEEEECCEEEccEEEEEEEecC-------CCccEEEEcCCcccCccccCCcHHHHHHHCCCCCcc
Confidence 9999997 68999999999999999999999998753 3589999999876542 456799999999999999
Q ss_pred EEEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 227 VFSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 227 ~FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
+||+||.+.. ...|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.++++.+.. ...++|||||+++++|++
T Consensus 155 ~Fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~---~~~~iiDSGTt~~~lP~~ 229 (334)
T 1j71_A 155 AYSLYLNSED--ASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVST---NADVVLDSGTTITYFSQS 229 (334)
T ss_dssp EEEEECCCTT--CSEEEEEETEEETTSEEEEEEEEECCCSSSCEEEEEEEEETTEEEEE---EEEEEECTTCSSEEECHH
T ss_pred EEEEEeCCCC--CCCeEEEEeeechHHccCceEEEEccCCCeEEEEEeEEEECCEeccC---CccEEEeCCCCcEecCHH
Confidence 9999998752 23799999999999999999999999888999999999999988753 467999999999999999
Q ss_pred HHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCc
Q 010235 307 IITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDA 386 (514)
Q Consensus 307 ~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
++++|++++++..
T Consensus 230 ~~~~l~~~~~~~~------------------------------------------------------------------- 242 (334)
T 1j71_A 230 TADKFARIVGATW------------------------------------------------------------------- 242 (334)
T ss_dssp HHHHHHHHHTCEE-------------------------------------------------------------------
T ss_pred HHHHHHHHcCCcc-------------------------------------------------------------------
Confidence 9999999997751
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCee-ecCCCCCCCCcEEEEE-CCEEEEeCcccceeeecC
Q 010235 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESA-VDCSRLSSLPIVSFTI-GGKIFDLTPDQYILKVGE 464 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-~~C~~~~~~P~i~f~~-gg~~~~i~~~~y~~~~~~ 464 (514)
+...+.|. ++|+ .+|.|+|+| +|.+++||+++|+++..+
T Consensus 243 ------------------------------------~~~~~~~~~~~C~---~~p~i~f~f~~g~~~~i~~~~y~~~~~~ 283 (334)
T 1j71_A 243 ------------------------------------DSRNEIYRLPSCD---LSGDAVFNFDQGVKITVPLSELILKDSD 283 (334)
T ss_dssp ------------------------------------ETTTTEEECSSSC---CCSEEEEEESTTCEEEEEGGGGEEECSS
T ss_pred ------------------------------------cCCCceEEEEcCC---CCCceEEEEcCCcEEEECHHHheeecCC
Confidence 01123677 8998 389999999 789999999999998543
Q ss_pred CCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 465 GDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 465 ~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+ ..|++.|+.. +.||||++|||++|+|||++++|||||+++
T Consensus 284 ~--~~C~~~i~~~-------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (334)
T 1j71_A 284 S--SICYFGISRN-------DANILGDNFLRRAYIVYDLDDKTISLAQVK 324 (334)
T ss_dssp S--SCEEESEEEC-------TTCEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred C--CeeEEEEeEC-------CCcEEChHhhccEEEEEECCCCEEEEEecC
Confidence 3 3599988742 359999999999999999999999999974
No 24
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2.1e-56 Score=455.77 Aligned_cols=315 Identities=26% Similarity=0.431 Sum_probs=269.1
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCC--CC------CCcccCCCCcccCCCCCcceeCCceEE
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSK--CY------FSIACYFHSKYRSGRSSTYKKNGKSAD 149 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~--C~------~~~~C~~~~~y~~~~SsT~~~~~~~~~ 149 (514)
..+||.+. +.+|+++|+||||||++.|++||||+++||+++. |. ....|..++.|+|++|+|++..++.|.
T Consensus 3 v~~~l~~~-~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~ 81 (342)
T 3pvk_A 3 VPVTLHNE-QVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFK 81 (342)
T ss_dssp EEEEEEEC-SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEE
T ss_pred cceEEecC-CcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEE
Confidence 35788775 7889999999999999999999999999998764 63 235798899999999999999999999
Q ss_pred EEeccce-EEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCC-CCCcHHHHHHHcCCCCCCE
Q 010235 150 IHYGTGA-ISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG-KAVPVWYNMVNQGLVNEPV 227 (514)
Q Consensus 150 ~~Y~~G~-~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~-~~~~~~~~l~~qg~i~~~~ 227 (514)
+.|++|+ +.|.+++|+|+|++..++++.||+++... ..+||||||++..+.. ..++++++|++||.|++++
T Consensus 82 i~Yg~gs~~~G~~~~D~v~ig~~~v~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~ 154 (342)
T 3pvk_A 82 IGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDSTS-------IDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNA 154 (342)
T ss_dssp EECSSSCEEEEEEEEEEEEETTEEEEEEEEEEEEEES-------SSSCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSE
T ss_pred EEecCCCeEEEEEEEEEEEECCEEecceEEEEEEccC-------CCccEEEecCccccccccCCcHHHHHHhcCCCCCce
Confidence 9999998 89999999999999999999999998754 3589999999886543 3567999999999999999
Q ss_pred EEEEecCCCCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHH
Q 010235 228 FSFWFNRNADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTI 307 (514)
Q Consensus 228 FSl~l~~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~ 307 (514)
||+||++.. ...|.|+|||+|++++.|++.|+|+....+|.|.+++|.++++.+.. ....++|||||++++||+++
T Consensus 155 fs~~l~~~~--~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~--~~~~~iiDSGtt~~~lP~~~ 230 (342)
T 3pvk_A 155 YSLYLNSPD--AATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINT--DNVDVLLDSGTTITYLQQDL 230 (342)
T ss_dssp EEEECCCTT--CSEEEEEETEEETTSBSSCCEEEECCCSSSCEEEEEEEEETTEEEEE--EEEEEEECTTCSSEEECHHH
T ss_pred EEEEeCCCC--CCCcEEEECccCccceeeeeEEeecCccceEEEEEeEEEECCEEecC--CCceEEEeCCCCCeecCHHH
Confidence 999998753 23799999999999999999999999888999999999999998753 34789999999999999999
Q ss_pred HHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcc
Q 010235 308 ITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAM 387 (514)
Q Consensus 308 ~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (514)
+++|.+++++...
T Consensus 231 ~~~i~~~~~~~~~------------------------------------------------------------------- 243 (342)
T 3pvk_A 231 ADQIIKAFNGKLT------------------------------------------------------------------- 243 (342)
T ss_dssp HHHHHHHTTCEEE-------------------------------------------------------------------
T ss_pred HHHHHHHcCCeec-------------------------------------------------------------------
Confidence 9999999987610
Q ss_pred cchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEEC-CEEEEeCcccceeeecCCC
Q 010235 388 CSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIG-GKIFDLTPDQYILKVGEGD 466 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~g-g~~~~i~~~~y~~~~~~~~ 466 (514)
.-....+.|.++|+. .|.|+|+|+ |.+++||+++|+++.....
T Consensus 244 ---------------------------------~~~~~~~~~~~~C~~---~p~i~f~f~~g~~~~vp~~~~~~~~~~~~ 287 (342)
T 3pvk_A 244 ---------------------------------QDSNGNSFYEVDCNL---SGDVVFNFSKNAKISVPASEFAASLQGDD 287 (342)
T ss_dssp ---------------------------------ECTTSCEEEEECSCC---CSEEEEEESTTCEEEEEGGGGEEC-----
T ss_pred ---------------------------------ccCCCceEEEEecCC---CCceEEEECCCCEEEEcHHHheeeccccC
Confidence 000112358999994 599999997 8999999999998743211
Q ss_pred ---CceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 467 ---AAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 467 ---~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
...|++.|+. .+.||||++|||++|++||++++|||||+++
T Consensus 288 g~~~~~C~~~i~~-------~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~ 331 (342)
T 3pvk_A 288 GQPYDKCQLLFDV-------NDANILGDNFLRSAYIVYDLDDNEISLAQVK 331 (342)
T ss_dssp -----CEEESEEE-------CTTCEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred CCcCCeeEEEEee-------CCCeEeCHHHHhcEEEEEECCCCEEEEEecC
Confidence 2679998874 2468999999999999999999999999985
No 25
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=7.2e-57 Score=455.40 Aligned_cols=312 Identities=26% Similarity=0.435 Sum_probs=266.3
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce-
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA- 156 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~- 156 (514)
...|+. .+.+|+++|+|| ||++.|++||||+++||+|..|. ...|..++.|+|++|+ ++..++.|.+.|++|+
T Consensus 7 ~~~~~~--~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~-~~~c~~~~~y~~~~Ss-~~~~~~~~~i~Yg~Gs~ 80 (323)
T 1bxo_A 7 TNTPTA--NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELP-ASQQSGHSVYNPSATG-KELSGYTWSISYGDGSS 80 (323)
T ss_dssp EEEECG--GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCBCHHHHC-EEEEEEEEEEECTTSCE
T ss_pred eeeecC--CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCC-chhccCCCCCCcccCC-cccCCCeEEEEeCCCCe
Confidence 334543 478899999999 89999999999999999999996 3457788999999999 7778899999999998
Q ss_pred EEEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCC---CCCcHHHHHHHcCCCCCCEEEEEec
Q 010235 157 ISGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG---KAVPVWYNMVNQGLVNEPVFSFWFN 233 (514)
Q Consensus 157 ~~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~---~~~~~~~~l~~qg~i~~~~FSl~l~ 233 (514)
+.|.+++|+|+|++..++++.||+++..++..+....++||||||++..+.. ..++++++|+++ |.+++||+||.
T Consensus 81 ~~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~l~~~--i~~~~FS~~L~ 158 (323)
T 1bxo_A 81 ASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSS--LAQPLFAVALK 158 (323)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSCGGGCCCBSSCCCCHHHHHGGG--BSSSEEEEECC
T ss_pred EEEEEEEEEEEECCEEECcEEEEEEEecCcccccCCCCceEEEeCcccccccccCCCCCHHHHHHHh--cCCcEEEEEEe
Confidence 8999999999999999999999999987553222356799999999887652 467899999987 88999999998
Q ss_pred CCCCCCCCcEEEECccCCCCCccceeEEecc-CccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHH
Q 010235 234 RNADEEEGGEIVFGGMDPDHYKGEHTYVPVT-QKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVN 312 (514)
Q Consensus 234 ~~~~~~~~G~L~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~ 312 (514)
+.. .|.|+|||+|+++|.|++.|+|+. ..++|.|.+++|+|++ + ......+||||||+++++|++++++|+
T Consensus 159 ~~~----~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~--~--~~~~~~aiiDSGTs~~~lP~~~~~~l~ 230 (323)
T 1bxo_A 159 HQQ----PGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS--Q--SGDGFSGIADTGTTLLLLDDSVVSQYY 230 (323)
T ss_dssp SSS----CEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT--E--EEEEEEEEECTTCSSEEECHHHHHHHH
T ss_pred CCC----CceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC--c--cCCCceEEEeCCCCceeCCHHHHHHHH
Confidence 742 799999999999999999999996 6789999999999999 2 345678999999999999999999999
Q ss_pred HHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhH
Q 010235 313 HAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCE 392 (514)
Q Consensus 313 ~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++.+...
T Consensus 231 ~~i~~a~~------------------------------------------------------------------------ 238 (323)
T 1bxo_A 231 SQVSGAQQ------------------------------------------------------------------------ 238 (323)
T ss_dssp TTSTTCEE------------------------------------------------------------------------
T ss_pred HhCCCceE------------------------------------------------------------------------
Confidence 98843200
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeee
Q 010235 393 MAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCIS 472 (514)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~ 472 (514)
....|.|.++|+ ..+|+|+|+|+|++++||+++|++...+ +...|++
T Consensus 239 ------------------------------~~~~g~~~~~C~--~~~P~i~f~fgg~~~~l~~~~~~~~~~~-~~~~C~~ 285 (323)
T 1bxo_A 239 ------------------------------DSNAGGYVFDCS--TNLPDFSVSISGYTATVPGSLINYGPSG-DGSTCLG 285 (323)
T ss_dssp ------------------------------ETTTTEEEECTT--CCCCCEEEEETTEEEEECHHHHEEEECS-SSSCEEE
T ss_pred ------------------------------cCcCCEEEEECC--CCCceEEEEECCEEEEECHHHeEEeccC-CCCeEEE
Confidence 012467899999 4799999999999999999999987532 3368999
Q ss_pred eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 473 GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 473 ~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
.|+..+ ..+.||||++|||++|+|||++++|||||++|
T Consensus 286 ~i~~~~----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 286 GIQSNS----GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp SEEECT----TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred EEECCC----CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 888542 34689999999999999999999999999986
No 26
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=2.8e-55 Score=447.06 Aligned_cols=312 Identities=28% Similarity=0.495 Sum_probs=265.1
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceE
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI 157 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~ 157 (514)
..+||.|+ +..|+++|+||||||++.|+|||||+++||+|. +.|+|++|++ ..++.|.+.|++|++
T Consensus 3 ~~~~l~n~-~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~-----------~~y~~s~Ss~--~~~~~~~i~Yg~Gs~ 68 (340)
T 1wkr_A 3 GSVPATNQ-LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD-----------KSYVKTSTSS--ATSDKVSVTYGSGSF 68 (340)
T ss_dssp EEEEEEEC-SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS-----------SCCCCCTTCE--EEEEEEEEECSSCEE
T ss_pred ccEeeecc-CcEEEEEEEECCCCcEEEEEEeCCChhheecCC-----------CccCCcCCcc--ccCceEEEEECCcEE
Confidence 46899997 679999999999999999999999999999742 5789988775 457899999999999
Q ss_pred EEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccC--------CCCCcHHHHHHHcCCCCCCEEE
Q 010235 158 SGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISV--------GKAVPVWYNMVNQGLVNEPVFS 229 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~--------~~~~~~~~~l~~qg~i~~~~FS 229 (514)
.|.+++|+|+|++..++++.||++....+ + ..++||||||++..+. ...++++++|++||+|++++||
T Consensus 69 ~G~~~~Dtv~~g~~~v~~~~fg~~~~~~~--~--~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS 144 (340)
T 1wkr_A 69 SGTEYTDTVTLGSLTIPKQSIGVASRDSG--F--DGVDGILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLA 144 (340)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEES--C--TTCSEEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEE
T ss_pred EEEEEEEEEEECCEEEcceEEEEEEccCC--C--cCCCcEEECCccccccccccccccccCCCHHHHHHHcCCCCCCEEE
Confidence 99999999999999999999999998654 3 2579999999988765 3457899999999999999999
Q ss_pred EEecCCC-CCCCCcEEEECccCCCCCccceeEEeccC----ccceEEEeceEEEcC-eeeeeecCCceEEEcCCCCCccc
Q 010235 230 FWFNRNA-DEEEGGEIVFGGMDPDHYKGEHTYVPVTQ----KGYWQFDMGDVMIDG-QTTGFCAGGCAAIADSGTSLLAG 303 (514)
Q Consensus 230 l~l~~~~-~~~~~G~L~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~-~~~~~~~~~~~aiiDSGtt~~~l 303 (514)
+||.+.. +....|.|+|||+|+++|.|++.|+|+.. .++|.|. ++|.|++ +.+. ....++|||||+++++
T Consensus 145 ~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i~v~~~~~l~---~~~~aiiDSGTt~~~l 220 (340)
T 1wkr_A 145 VSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSIL---SSTAGIVDTGTTLTLI 220 (340)
T ss_dssp EECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEEEETTTEEEE---EEEEEEECTTBCSEEE
T ss_pred EEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeEEECCCeEcc---CCCeEEEeCCcccccC
Confidence 9998642 12247999999999999999999999977 7899999 9999998 7663 2358999999999999
Q ss_pred CHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCC
Q 010235 304 PTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGF 383 (514)
Q Consensus 304 P~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (514)
|++++++|.++++++.
T Consensus 221 P~~~~~~l~~~~~a~~---------------------------------------------------------------- 236 (340)
T 1wkr_A 221 ASDAFAKYKKATGAVA---------------------------------------------------------------- 236 (340)
T ss_dssp CHHHHHHHHHHHTCEE----------------------------------------------------------------
T ss_pred CHHHHHHHHHhhCCEE----------------------------------------------------------------
Confidence 9999999999887651
Q ss_pred CCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeec
Q 010235 384 HDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVG 463 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~ 463 (514)
....|.|.+||+....+|+|+|+|+|.++.|+|++|+++..
T Consensus 237 ---------------------------------------~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~~yi~~~~ 277 (340)
T 1wkr_A 237 ---------------------------------------DNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRN 277 (340)
T ss_dssp ---------------------------------------CTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGG
T ss_pred ---------------------------------------cCCCCeEEeeccccccCCcEEEEECCEEEEEcHHHhccccc
Confidence 01245789999866689999999999999999999998643
Q ss_pred C-----CCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 464 E-----GDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 464 ~-----~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
. +....|++.|..++.....++.||||++|||++|+|||++++|||||+++
T Consensus 278 ~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 333 (340)
T 1wkr_A 278 LNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTS 333 (340)
T ss_dssp GGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECT
T ss_pred cccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecC
Confidence 2 12357998887655333334579999999999999999999999999974
No 27
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=1.1e-54 Score=459.11 Aligned_cols=325 Identities=27% Similarity=0.441 Sum_probs=263.3
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEE
Q 010235 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G 159 (514)
.+|.+..+..|+++|+||||||+|.|+|||||+++||+|..| |..++.|+|++|+||+..++.|.+.|++|++.|
T Consensus 66 ~~l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c-----c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G 140 (455)
T 3lpj_A 66 DNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH-----PFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEG 140 (455)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC-----TTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred ccccCCCCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc-----cccCCcccCCCCCCcccCCccEEEEeCCeEEEE
Confidence 345556678999999999999999999999999999999887 667899999999999999999999999999999
Q ss_pred EEEEEEEEECc-eeec-ccEEEEEEeeCCcccccccceeeeecccccccCC--CCCcHHHHHHHcCCCCCCEEEEEecCC
Q 010235 160 FFSEDHVKIGD-LVVK-DQEFIEATREPSLTFLLAKFDGILGLGFQEISVG--KAVPVWYNMVNQGLVNEPVFSFWFNRN 235 (514)
Q Consensus 160 ~~~~D~v~ig~-~~~~-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~--~~~~~~~~l~~qg~i~~~~FSl~l~~~ 235 (514)
.+++|+|+|++ ..+. .+.|+++............++||||||++..+.. ..++++++|++|+.|+ ++||+||.+.
T Consensus 141 ~~~~Dtv~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~L~~~ 219 (455)
T 3lpj_A 141 ELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGA 219 (455)
T ss_dssp EEEEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCC
T ss_pred EEEEEEEEECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCccccccccCCCCcHHHHHHHccCCC-ceeEEEeccc
Confidence 99999999984 2222 2567777665442222356799999999988754 3778999999999997 9999999753
Q ss_pred CC--------CCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeec---CCceEEEcCCCCCcccC
Q 010235 236 AD--------EEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCA---GGCAAIADSGTSLLAGP 304 (514)
Q Consensus 236 ~~--------~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~---~~~~aiiDSGtt~~~lP 304 (514)
.. ....|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|.|+++.+.+.. ....++|||||+++++|
T Consensus 220 ~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP 299 (455)
T 3lpj_A 220 GFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLP 299 (455)
T ss_dssp SSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTSSSEEEE
T ss_pred cccccccccccCCCceEEECCcCcccccCceEEEecCCCceeEEEEeEEEECCEEccccccccCCCeEEEECCCcceeCC
Confidence 10 22479999999999999999999999999999999999999999876432 25689999999999999
Q ss_pred HHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCC
Q 010235 305 TTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFH 384 (514)
Q Consensus 305 ~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (514)
++++++|++++++....
T Consensus 300 ~~~~~~i~~~i~~~~~~--------------------------------------------------------------- 316 (455)
T 3lpj_A 300 KKVFEAAVKSIKAASST--------------------------------------------------------------- 316 (455)
T ss_dssp HHHHHHHHHHHHHHTTT---------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhccc---------------------------------------------------------------
Confidence 99999999999765100
Q ss_pred CcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCC-CCCCeeecCCCCCC-----CCcEEEEECCE------EEE
Q 010235 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS-PMGESAVDCSRLSS-----LPIVSFTIGGK------IFD 452 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~~~~~~C~~~~~-----~P~i~f~~gg~------~~~ 452 (514)
...+. ....|.++|..... +|+|+|+|+|. +++
T Consensus 317 -----------------------------------~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~ 361 (455)
T 3lpj_A 317 -----------------------------------EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRIT 361 (455)
T ss_dssp -----------------------------------SCCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEEE
T ss_pred -----------------------------------cccCcccccCcceecccccCCchhcCCcEEEEEcCCCcCceEEEE
Confidence 00000 00123567876543 89999999775 599
Q ss_pred eCcccceeeecCCC--Cceeee-eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 453 LTPDQYILKVGEGD--AAQCIS-GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 453 i~~~~y~~~~~~~~--~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
|+|++|+++..+.+ ...|+. .+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 362 l~~~~yi~~~~~~~~~~~~C~~f~~~------~~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 420 (455)
T 3lpj_A 362 ILPQQYLRPVEDVATSQDDCYKFAIS------QSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 420 (455)
T ss_dssp ECHHHHEEEECCTTCCSCEEEEECEE------EESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred ECHHHheEeccCCCCCCceEEEEecc------CCCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence 99999999865432 257996 222 123579999999999999999999999999974
No 28
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-54 Score=443.85 Aligned_cols=325 Identities=27% Similarity=0.468 Sum_probs=259.5
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEE
Q 010235 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G 159 (514)
.+|.+..+..|+++|+||||||++.|+|||||+++||+|..|. .| ++.|+|++|+||+..++.|.+.|++|++.|
T Consensus 5 ~~l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~---~~--~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G 79 (383)
T 2ewy_A 5 DNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS---YI--DTYFDTERSSTYRSKGFDVTVKYTQGSWTG 79 (383)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT---TB--SCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred eeccCCCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCC---cc--ccCcccccCccceeCCceEEEEECCcEEEE
Confidence 3677777889999999999999999999999999999998884 34 678999999999999999999999999999
Q ss_pred EEEEEEEEECcee-ec-ccEEEEEEeeCCcccccccceeeeecccccccC--CCCCcHHHHHHHcCCCCCCEEEEEecCC
Q 010235 160 FFSEDHVKIGDLV-VK-DQEFIEATREPSLTFLLAKFDGILGLGFQEISV--GKAVPVWYNMVNQGLVNEPVFSFWFNRN 235 (514)
Q Consensus 160 ~~~~D~v~ig~~~-~~-~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~--~~~~~~~~~l~~qg~i~~~~FSl~l~~~ 235 (514)
.+++|+|+|++.. .. .+.|++.....+.......++||||||++..+. ....+++++|++|+.| +++||+||++.
T Consensus 80 ~~~~Dtv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i-~~~FS~~l~~~ 158 (383)
T 2ewy_A 80 FVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGA 158 (383)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTC-CSCEEEEECCC
T ss_pred EEEEEEEEECCCccceeEEEEEEEEeecceeeccCcCceEEecCchhcccccccccCHHHHHHHccCC-CcceEEEeecc
Confidence 9999999998632 22 245776654433211234679999999998775 4567899999999999 79999999752
Q ss_pred -----CCCCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecC---CceEEEcCCCCCcccCHHH
Q 010235 236 -----ADEEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAG---GCAAIADSGTSLLAGPTTI 307 (514)
Q Consensus 236 -----~~~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aiiDSGtt~~~lP~~~ 307 (514)
.+....|.|+|||+|+++|.|++.|+|+.+..+|.|.+++|.|+++.+.+... ...++|||||+++++|+++
T Consensus 159 ~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~ 238 (383)
T 2ewy_A 159 GLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKV 238 (383)
T ss_dssp ---------CCEEEEETSCCGGGCCSCEEEEECSSBTTBBCCEEEEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHH
T ss_pred ccccccCCCCCeEEEeCccchhhccCccEEEecCCCceEEEEEEEEEECCEEccccccccCCccEEEEcCCccccCCHHH
Confidence 11234899999999999999999999999889999999999999998764322 4689999999999999999
Q ss_pred HHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcc
Q 010235 308 ITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAM 387 (514)
Q Consensus 308 ~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (514)
+++|++++++.....
T Consensus 239 ~~~l~~~i~~~~~~~----------------------------------------------------------------- 253 (383)
T 2ewy_A 239 FDAVVEAVARASLIP----------------------------------------------------------------- 253 (383)
T ss_dssp HHHHHHHHHHTTCSS-----------------------------------------------------------------
T ss_pred HHHHHHHHhhhcccc-----------------------------------------------------------------
Confidence 999999997651000
Q ss_pred cchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCC-CCCeeecCCCC-----CCCCcEEEEECCE------EEEeCc
Q 010235 388 CSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP-MGESAVDCSRL-----SSLPIVSFTIGGK------IFDLTP 455 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~-----~~~P~i~f~~gg~------~~~i~~ 455 (514)
..+.. ...+.++|... ..+|.|+|+|+|. +++|+|
T Consensus 254 ---------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~~ 300 (383)
T 2ewy_A 254 ---------------------------------EFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILP 300 (383)
T ss_dssp ---------------------------------CCCHHHHHTSEEEEECSSSCGGGGSCCEEEEEECSSTTEEEEEEECH
T ss_pred ---------------------------------cCccccccccccccccCCcccHhhCCcEEEEECCCCCCceEEEEECh
Confidence 00000 01245677644 2589999999763 799999
Q ss_pred ccceeeecC-CCCceeee-eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 456 DQYILKVGE-GDAAQCIS-GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 456 ~~y~~~~~~-~~~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
++|+.+..+ .....|+. .+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 301 ~~yi~~~~~~~~~~~C~~~~i~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 355 (383)
T 2ewy_A 301 QLYIQPMMGAGLNYECYRFGISP------STNALVIGATVMEGFYVIFDRAQKRVGFAASP 355 (383)
T ss_dssp HHHEEEECCCTTCSEEEEESEEE------ESSCEEECHHHHTTEEEEEETTTTEEEEEECT
T ss_pred HHheeecccCCCCceeEEEEecC------CCCcEEEChHHhCCeeEEEECCCCeEEEEecc
Confidence 999987642 22468985 4442 13479999999999999999999999999974
No 29
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.9e-53 Score=442.16 Aligned_cols=324 Identities=27% Similarity=0.439 Sum_probs=258.9
Q ss_pred EeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEE
Q 010235 80 VALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISG 159 (514)
Q Consensus 80 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G 159 (514)
.+|.+..+..|+++|+||||||++.|+|||||+++||+|..|. .| ++.|+|++|+||+..++.|.+.|++|++.|
T Consensus 13 ~~l~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~---~~--~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G 87 (395)
T 2qp8_A 13 DNLRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHP---FL--HRYYQRQLSSTYRDLRKGVYVPYTQGKWEG 87 (395)
T ss_dssp TCEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCT---TC--SCCCCGGGCTTCEEEEEEEEEECSSCEEEE
T ss_pred eecCCCCCceEEEEEEecCCCceEEEEEecCCCceEEECCCCc---cc--cCCcCcccCCCceeCCceEEEEECCcEEEE
Confidence 3556666789999999999999999999999999999999884 33 688999999999999999999999999999
Q ss_pred EEEEEEEEEC-ceeec-ccEEEEEEeeCCcccc-cccceeeeecccccccCC--CCCcHHHHHHHcCCCCCCEEEEEecC
Q 010235 160 FFSEDHVKIG-DLVVK-DQEFIEATREPSLTFL-LAKFDGILGLGFQEISVG--KAVPVWYNMVNQGLVNEPVFSFWFNR 234 (514)
Q Consensus 160 ~~~~D~v~ig-~~~~~-~~~fg~~~~~~~~~~~-~~~~~GilGLg~~~~s~~--~~~~~~~~l~~qg~i~~~~FSl~l~~ 234 (514)
.+++|+|+|+ +..+. .+.|++....... |. ...++||||||++..+.. ...+++++|++|+.|+ ++||+||.+
T Consensus 88 ~~~~Dtv~ig~g~~~~~~~~~~~~~~~~~~-f~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i~-~~FS~~L~~ 165 (395)
T 2qp8_A 88 ELGTDLVSIPHGPNVTVRANIAAITESDKF-FINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG 165 (395)
T ss_dssp EEEEEEEECTTSCSCEEEEEEEEEEEEESC-SCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECC
T ss_pred EEEeEEEEECCCCCceEEEEEEEEEccCcc-cccccCccceEEcCchhhccCCCCCCCHHHHHHHccCCc-ceEEEEecc
Confidence 9999999998 55443 2556766544332 22 346799999999987643 4678999999999997 899999976
Q ss_pred CCC--------CCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeec---CCceEEEcCCCCCccc
Q 010235 235 NAD--------EEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCA---GGCAAIADSGTSLLAG 303 (514)
Q Consensus 235 ~~~--------~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~---~~~~aiiDSGtt~~~l 303 (514)
..- ....|.|+|||+|+++|.|++.|+|+.+.++|.|.+++|+|+++.+.+.. ....+||||||+++++
T Consensus 166 ~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~l 245 (395)
T 2qp8_A 166 AGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRL 245 (395)
T ss_dssp CSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECCSBTTBBCCEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEE
T ss_pred ccccccccccccCCCcEEEECCcCcccccCceEEeccCCCceEEEEEEEEEECCEEcccCccccCCceEEEEcCCCcEec
Confidence 310 12479999999999999999999999988999999999999998875432 2467999999999999
Q ss_pred CHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCC
Q 010235 304 PTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGF 383 (514)
Q Consensus 304 P~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (514)
|++++++|++++++.....
T Consensus 246 P~~~~~~l~~~i~~~~~~~------------------------------------------------------------- 264 (395)
T 2qp8_A 246 PKKVFEAAVKSIKAASSTE------------------------------------------------------------- 264 (395)
T ss_dssp EHHHHHHHHHHHHHHTTTS-------------------------------------------------------------
T ss_pred CHHHHHHHHHHHhhhcccc-------------------------------------------------------------
Confidence 9999999999997641000
Q ss_pred CCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCC-CCCCeeecCCCCC-----CCCcEEEEECCE------EE
Q 010235 384 HDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS-PMGESAVDCSRLS-----SLPIVSFTIGGK------IF 451 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~~~~~~~C~~~~-----~~P~i~f~~gg~------~~ 451 (514)
..+. ....+.++|.... .+|.|+|+|+|. ++
T Consensus 265 -------------------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~ 307 (395)
T 2qp8_A 265 -------------------------------------KFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRI 307 (395)
T ss_dssp -------------------------------------CCCHHHHTTCSCEEESTTCCCGGGSCCEEEEEECSSTTEEEEE
T ss_pred -------------------------------------cCCccccccccccccccccchHhhCCcEEEEEccCCCCceEEE
Confidence 0000 0011245665433 589999999764 79
Q ss_pred EeCcccceeeecC--CCCceee-eeeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 452 DLTPDQYILKVGE--GDAAQCI-SGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 452 ~i~~~~y~~~~~~--~~~~~C~-~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
+|+|++|+.+..+ .....|+ .++.. .++.||||++|||++|+|||++++|||||+++
T Consensus 308 ~l~p~~yi~~~~~~~~~~~~C~~~~i~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 367 (395)
T 2qp8_A 308 TILPQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 367 (395)
T ss_dssp EECHHHHEEEECCTTCCSCEEEEECEEE------ESSCEEECHHHHTTEEEEEETTTTEEEEEEET
T ss_pred EECHHHhEeecccCCCCCceEEEEEecC------CCCcEEEChHHhCCeeEEEECCCCEEEEEecc
Confidence 9999999988653 2335897 45552 12579999999999999999999999999974
No 30
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.7e-53 Score=443.52 Aligned_cols=323 Identities=27% Similarity=0.448 Sum_probs=258.5
Q ss_pred ceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceEEEEE
Q 010235 82 LKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAISGFF 161 (514)
Q Consensus 82 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~~G~~ 161 (514)
|....+..|+++|+||||||++.|+|||||+++||+|..| |..++.|+|++|+||+..++.|.+.|++|++.|.+
T Consensus 22 l~~~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c-----~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~ 96 (402)
T 3vf3_A 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH-----PFLHRYYQRQLSSTYRDLRKGVYVPYTQGKWEGEL 96 (402)
T ss_dssp EEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC-----TTCSCCCCGGGCTTCEEEEEEEEEECSSCEEEEEE
T ss_pred ccCCCCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC-----CcccCCcCcccCcccccCCCEEEEEECcEEEEEEE
Confidence 3334467899999999999999999999999999999887 56688999999999999999999999999999999
Q ss_pred EEEEEEECc-eeecc-cEEEEEEeeCCcccccccceeeeecccccccCC--CCCcHHHHHHHcCCCCCCEEEEEecCCC-
Q 010235 162 SEDHVKIGD-LVVKD-QEFIEATREPSLTFLLAKFDGILGLGFQEISVG--KAVPVWYNMVNQGLVNEPVFSFWFNRNA- 236 (514)
Q Consensus 162 ~~D~v~ig~-~~~~~-~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~--~~~~~~~~l~~qg~i~~~~FSl~l~~~~- 236 (514)
++|+|+|++ ..+.. +.|+++............++||||||++..+.. ..++++++|++|+.|+ ++||+||.+..
T Consensus 97 ~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~-~~FS~~l~~~~~ 175 (402)
T 3vf3_A 97 GTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCGAGF 175 (402)
T ss_dssp EEEEEECTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCC-SCEEEEECCCC-
T ss_pred EEEEEEECCccccceeeeEEEEEccccccccCCCccceEEcCchhhcccCCcCCcHHHHHHHccCCc-cceEEEeecccc
Confidence 999999984 44443 346666654432222456799999999988764 3678999999999997 99999997531
Q ss_pred ----C---CCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeec---CCceEEEcCCCCCcccCHH
Q 010235 237 ----D---EEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCA---GGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 237 ----~---~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~---~~~~aiiDSGtt~~~lP~~ 306 (514)
. ....|.|+|||+|+++|.|+++|+|+.+.++|.|.+++|.|+++.+.+.. ....++|||||+++++|.+
T Consensus 176 ~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~ 255 (402)
T 3vf3_A 176 PLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKK 255 (402)
T ss_dssp ------------EEEEESSCCGGGEEEEEEEEECSSBTTBEECEEEEEETTEECCCCGGGGGSSCEEECTTCCSEEEEHH
T ss_pred cccccccccCCCCEEEeCCcCcccccCceEEEeCCcCcEEEEEEeEEEECCEEecccccccCCCeEEEECCCCcccCCHH
Confidence 0 23479999999999999999999999999999999999999999876432 2568999999999999999
Q ss_pred HHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCc
Q 010235 307 IITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDA 386 (514)
Q Consensus 307 ~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (514)
++++|++++++....
T Consensus 256 ~~~~i~~~i~~~~~~----------------------------------------------------------------- 270 (402)
T 3vf3_A 256 VFEAAVKSIKAASST----------------------------------------------------------------- 270 (402)
T ss_dssp HHHHHHHHHHHHTTT-----------------------------------------------------------------
T ss_pred HHHHHHHHHhhhccc-----------------------------------------------------------------
Confidence 999999999765100
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCC-CCCeeecCCCCC-----CCCcEEEEECCE------EEEeC
Q 010235 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP-MGESAVDCSRLS-----SLPIVSFTIGGK------IFDLT 454 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~-~~~~~~~C~~~~-----~~P~i~f~~gg~------~~~i~ 454 (514)
...+.. ...|.++|.... .+|+|+|+|+|. +++|+
T Consensus 271 ---------------------------------~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~~~~~~l~ 317 (402)
T 3vf3_A 271 ---------------------------------EKFPDGFWLGEQLVCWQAGTTPWNIFPVISLYLMGEVTNQSFRITIL 317 (402)
T ss_dssp ---------------------------------SCCCTTGGGTCSCEEEETTCCCGGGSCCEEEEEECSSTTEEEEEEEC
T ss_pred ---------------------------------cccCccccccccccccccccchHhhCCceEEEEecCCCCceEEEEEC
Confidence 000000 012357786554 689999999765 59999
Q ss_pred cccceeeecCCC--Cceeee-eeEecccCCCCCCeeeeChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 455 PDQYILKVGEGD--AAQCIS-GFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 455 ~~~y~~~~~~~~--~~~C~~-~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
|++|+.+..+.. ...|+. .+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 318 ~~~yi~~~~~~~~~~~~C~~~~~~~------~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~ 374 (402)
T 3vf3_A 318 PQQYLRPVEDVATSQDDCYKFAISQ------SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSA 374 (402)
T ss_dssp HHHHEEECCCGGGTTEEEEEECEEE------ESSCEEECHHHHTTEEEEEEGGGTEEEEEEET
T ss_pred HHHheehhccCCCCCceEEEEeccC------CCCcEEEChHHhCCeEEEEECCCCEEEEEecc
Confidence 999999765431 247995 3331 23579999999999999999999999999974
No 31
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=3.4e-52 Score=433.70 Aligned_cols=324 Identities=17% Similarity=0.251 Sum_probs=254.0
Q ss_pred ccEEece-eccCceEEEEEEecCCCceEEEEeeCCCCceeeeCC-----------CCCCCcccCCCCcc------cCCCC
Q 010235 77 ADIVALK-NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSS-----------KCYFSIACYFHSKY------RSGRS 138 (514)
Q Consensus 77 ~~~~~l~-n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~-----------~C~~~~~C~~~~~y------~~~~S 138 (514)
...+||. |+.+.+|+++|.||||||++.|+|||||+++||+|. .|. +..|..+..| ++.+|
T Consensus 9 ~~~~pl~~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~-s~~C~~~~~~~c~~c~~~~~s 87 (403)
T 3aup_A 9 LVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCH-STQCSRANTHQCLSCPAASRP 87 (403)
T ss_dssp CEEEEEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTT-BHHHHHTTCCCEEECSSSCBT
T ss_pred cEEEeeecCCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCC-CccccCccccCccccCCCCCC
Confidence 4468999 888999999999999999999999999999999999 564 4467777777 55544
Q ss_pred CcceeCCceEEEEec-cc-eEEEEEEEEEEEECc-----------eeecccEEEEEEeeCCcccccccceeeeecccccc
Q 010235 139 STYKKNGKSADIHYG-TG-AISGFFSEDHVKIGD-----------LVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEI 205 (514)
Q Consensus 139 sT~~~~~~~~~~~Y~-~G-~~~G~~~~D~v~ig~-----------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~ 205 (514)
+ +....|.|.+.|+ +| .+.|.+++|+|+|++ ..++++.|||+.......+....++||||||++..
T Consensus 88 ~-~~~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~ 166 (403)
T 3aup_A 88 G-CHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPI 166 (403)
T ss_dssp T-BCSSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTT
T ss_pred C-CCCCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCc
Confidence 3 4556789999997 55 489999999999988 88999999999875432133457899999999876
Q ss_pred cCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECccCCCCC--c-c-----ceeEEeccCc--cceEEEece
Q 010235 206 SVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDHY--K-G-----EHTYVPVTQK--GYWQFDMGD 275 (514)
Q Consensus 206 s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~d~~~~--~-g-----~l~~~p~~~~--~~w~v~l~~ 275 (514)
+ +..+|. ++.+.+++||+||.+.. ...|.|+||| |+.+| . | ++.|+|+... ++|.|.+++
T Consensus 167 s------~~~ql~-~~~~~~~~FS~~L~~~~--~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~~~~~y~v~l~~ 236 (403)
T 3aup_A 167 S------LPNQLA-SHFGLQRQFTTCLSRYP--TSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNS 236 (403)
T ss_dssp S------HHHHHH-HHHTCCSEEEEECCSCT--TSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEECTTSCEEECEEE
T ss_pred C------HHHHHH-hhcCCCCeEEEEcCCCC--CCCeeEEECC-CchhccccccccccCceeecccccCCCCcceEEEEE
Confidence 5 566664 45577799999998752 2379999999 98888 5 5 9999999765 899999999
Q ss_pred EEEcCeee-eeecC--------CceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCc
Q 010235 276 VMIDGQTT-GFCAG--------GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEP 346 (514)
Q Consensus 276 i~v~~~~~-~~~~~--------~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~ 346 (514)
|+|+++.+ .+... ...+||||||++++||++++++|++++.+..- .+ ...
T Consensus 237 i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~----------~~---------~~~-- 295 (403)
T 3aup_A 237 IRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLP----------KQ---------AQV-- 295 (403)
T ss_dssp EEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSC----------GG---------GEE--
T ss_pred EEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhc----------cc---------ccc--
Confidence 99999887 43322 23599999999999999999999999954300 00 000
Q ss_pred cchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCC
Q 010235 347 QKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPM 426 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 426 (514)
-+...
T Consensus 296 ---------------------------------------------------------------------------~~~~~ 300 (403)
T 3aup_A 296 ---------------------------------------------------------------------------KSVAP 300 (403)
T ss_dssp ---------------------------------------------------------------------------CCCTT
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 00011
Q ss_pred CCeeecCCCCCCCCcEEEEECC---EEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEEC
Q 010235 427 GESAVDCSRLSSLPIVSFTIGG---KIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDY 503 (514)
Q Consensus 427 ~~~~~~C~~~~~~P~i~f~~gg---~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~ 503 (514)
..|-++|+.+..+|.|+|+|+| ++++|++++|+++..+ ...|+ +|+..+. ...+.||||+.|||++|+|||+
T Consensus 301 ~~~c~~c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~fl~~~yvvfD~ 375 (403)
T 3aup_A 301 FGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP--GVTCL-GVMNGGM--QPRAEITLGARQLEENLVVFDL 375 (403)
T ss_dssp CSCEECGGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC-----CEEE-CEEECCS--CCSSSEEECHHHHTTSCEEEET
T ss_pred CCceEECCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCC--CeEEE-EEEcCCC--CCCCcEEEChHHhcCeEEEEEC
Confidence 2366788877789999999987 4999999999997543 36899 7876432 1245799999999999999999
Q ss_pred CCCeEEE-EEc
Q 010235 504 SNMRVGF-AEA 513 (514)
Q Consensus 504 ~~~riGf-a~a 513 (514)
+++|||| |++
T Consensus 376 ~~~rIGf~A~~ 386 (403)
T 3aup_A 376 ARSRVGFSTSS 386 (403)
T ss_dssp TTTEEEEESSC
T ss_pred CCCEEEEeccc
Confidence 9999999 775
No 32
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=1.3e-51 Score=429.33 Aligned_cols=335 Identities=17% Similarity=0.220 Sum_probs=254.1
Q ss_pred CccEEecee-ccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCC----------CcccCCCCcccCCC-----CC
Q 010235 76 DADIVALKN-YMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF----------SIACYFHSKYRSGR-----SS 139 (514)
Q Consensus 76 ~~~~~~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~----------~~~C~~~~~y~~~~-----Ss 139 (514)
+...+|++. ..+.+|+++|.||||||+|.|++||||+++||+|..|.. +..|..++.|++.. ++
T Consensus 7 ~~~~~pv~~d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c~~Sst~~~v~C~s~~C~~~~~~~~~~c~s~~~~ 86 (413)
T 3vla_A 7 SALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPVRCRTSQCSLSGSIACGDCFNGPRP 86 (413)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSSCCCTTCEECBTTSHHHHHTTCCEEECCSSCCBT
T ss_pred ccEEEEeeecCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCCCCCCCcCccCCCcccccccccCCCcccccCCCC
Confidence 455678874 457899999999999999999999999999999965421 44676677787642 34
Q ss_pred cceeCCceEEEEec-cce-EEEEEEEEEEEEC---------ceeecccEEEEEEeeCCcccccccceeeeecccccccCC
Q 010235 140 TYKKNGKSADIHYG-TGA-ISGFFSEDHVKIG---------DLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVG 208 (514)
Q Consensus 140 T~~~~~~~~~~~Y~-~G~-~~G~~~~D~v~ig---------~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 208 (514)
++....|.|.+.|+ +|+ +.|.+++|+|+|+ ++.++++.|||+....... ....++||||||++..+
T Consensus 87 ~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g-~~~~~dGIlGLg~~~lS-- 163 (413)
T 3vla_A 87 GCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQN-LASGVVGMAGLGRTRIA-- 163 (413)
T ss_dssp TBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTT-SCTTCCEEEECSSSSSS--
T ss_pred CCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccC-cccccccccccCCCCcc--
Confidence 56667799999995 654 7999999999997 3678899999998753211 23567999999998876
Q ss_pred CCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECccCCCC-----Cccc-eeEEeccCc--------------cc
Q 010235 209 KAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPDH-----YKGE-HTYVPVTQK--------------GY 268 (514)
Q Consensus 209 ~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~d~~~-----~~g~-l~~~p~~~~--------------~~ 268 (514)
+..+|.+++.+ +++||+||.+.. ...|.|+|||+|..+ +.|+ ++|+|+... .+
T Consensus 164 ----l~sql~~~~~i-~~~FS~cL~~~~--~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~~~~ 236 (413)
T 3vla_A 164 ----LPSQFASAFSF-KRKFAMCLSGST--SSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVE 236 (413)
T ss_dssp ----HHHHHHHHHTC-CSEEEEECCSCS--SSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCCCCS
T ss_pred ----hHHHHhhhcCC-CceEEEeCCCCC--CCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCCCce
Confidence 77889999988 899999998842 237999999998753 6788 999999654 69
Q ss_pred eEEEeceEEEcCeeeeeec--------CCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHh
Q 010235 269 WQFDMGDVMIDGQTTGFCA--------GGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINML 340 (514)
Q Consensus 269 w~v~l~~i~v~~~~~~~~~--------~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~ 340 (514)
|.|++++|+|+++.+.++. +...+||||||++++||+++|++|.++|.+... ...|
T Consensus 237 y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~--------~~~~-------- 300 (413)
T 3vla_A 237 YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA--------ARNI-------- 300 (413)
T ss_dssp CEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHH--------HTTC--------
T ss_pred EEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhc--------ccCC--------
Confidence 9999999999999886542 357899999999999999999999999965400 0000
Q ss_pred hccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcc
Q 010235 341 LAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCD 420 (514)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 420 (514)
.+..+ . .....|+
T Consensus 301 -~~~~~---~---------------------------------------------------------------~~~~~C~ 313 (413)
T 3vla_A 301 -TRVAS---V---------------------------------------------------------------APFGACF 313 (413)
T ss_dssp -CEECC---C---------------------------------------------------------------TTCSCEE
T ss_pred -CcCCC---C---------------------------------------------------------------CCCccee
Confidence 00000 0 0012233
Q ss_pred cCCCCCCCeeecCCCCCCCCcEEEEECC--EEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeE
Q 010235 421 RLPSPMGESAVDCSRLSSLPIVSFTIGG--KIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYH 498 (514)
Q Consensus 421 ~~~~~~~~~~~~C~~~~~~P~i~f~~gg--~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y 498 (514)
..+.... . .....+|+|+|+|+| +.|+|++++|+++..+ ...|+ +|...+. ..++.||||+.|||++|
T Consensus 314 ~~~~~~~--~---~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~--~~~~~~IlGd~fl~~~~ 383 (413)
T 3vla_A 314 STDNILS--T---RLGPSVPSIDLVLQSESVVWTITGSNSMVYIND--NVVCL-GVVDGGS--NLRTSIVIGGHQLEDNL 383 (413)
T ss_dssp ECTTCCE--E---TTEECCCCEEEECSSTTCEEEECHHHHEEEEET--TEEEE-CEEEEES--SCSSSEEECHHHHTTEE
T ss_pred ccCCccc--c---ccccCCCcEEEEEcCCcEEEEeCccceEEEeCC--CcEEE-EEEecCC--CcccceeEehhhhcCeE
Confidence 3321000 0 001378999999987 8999999999998654 36898 5665432 13468999999999999
Q ss_pred EEEECCCCeEEEEEc
Q 010235 499 TVFDYSNMRVGFAEA 513 (514)
Q Consensus 499 ~vfD~~~~riGfa~a 513 (514)
+|||++++|||||++
T Consensus 384 vvfD~~~~riGfa~~ 398 (413)
T 3vla_A 384 VQFDLATSRVGFSGT 398 (413)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEECCCCEEEEEEe
Confidence 999999999999986
No 33
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=1e-48 Score=404.54 Aligned_cols=324 Identities=15% Similarity=0.201 Sum_probs=237.5
Q ss_pred EEece-eccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCC-------CCcccCCCCcccCCCCCcce-------e
Q 010235 79 IVALK-NYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCY-------FSIACYFHSKYRSGRSSTYK-------K 143 (514)
Q Consensus 79 ~~~l~-n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~-------~~~~C~~~~~y~~~~SsT~~-------~ 143 (514)
.+||. ++.+.+|+++|+|||| |+|||||+++||+|..|. .+..|..++.|++..+ ++. .
T Consensus 4 ~~pv~~~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~~~~~~~C~s~~C~~~~~~~~~sc-~~~~~~~~~~~ 77 (381)
T 1t6e_X 4 LAPVTKDPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGC-PAPSCGSDKHD 77 (381)
T ss_dssp EEEEEECTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTCCCCCCBTTSHHHHHHHSSCCTTC-CCCCC------
T ss_pred EEeEEecCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCCCCCccCCCCchhccccCCCCCCC-CCccCCcCcCC
Confidence 57887 7779999999999997 999999999999996442 1345666667776533 322 2
Q ss_pred CCc-eEEEEeccce-EEEEEEEEEEEECc----eeeccc----EEEEEEeeCCcccccccceeeeecccccccCCCCCcH
Q 010235 144 NGK-SADIHYGTGA-ISGFFSEDHVKIGD----LVVKDQ----EFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPV 213 (514)
Q Consensus 144 ~~~-~~~~~Y~~G~-~~G~~~~D~v~ig~----~~~~~~----~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~ 213 (514)
..| .|.+.|++|+ +.|.+++|+|++++ ..++++ .|||+.......+ ...++||||||++..+ +
T Consensus 78 ~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~~-~~~~dGIlGLg~~~~s------~ 150 (381)
T 1t6e_X 78 KPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLASL-PRGSTGVAGLANSGLA------L 150 (381)
T ss_dssp CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTTS-CTTEEEEEECSSSTTS------H
T ss_pred CccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCCC-CCCCceEEEeCCCcch------h
Confidence 234 5999999998 48999999999985 466665 5699876522222 3578999999998765 6
Q ss_pred HHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECccCCC--CCccceeEEeccCc---cceEEEeceEEEcCeeeeeecC
Q 010235 214 WYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGGMDPD--HYKGEHTYVPVTQK---GYWQFDMGDVMIDGQTTGFCAG 288 (514)
Q Consensus 214 ~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~d~~--~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~ 288 (514)
..+|.+||++ +++||+||.+. ..|.|+|||+|.. ++.|++.|+|+... .+|.|.+++|+|+++.+.++..
T Consensus 151 ~~ql~~~~~~-~~~FS~~L~~~----~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~~~~~~~ 225 (381)
T 1t6e_X 151 PAQVASAQKV-ANRFLLCLPTG----GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEG 225 (381)
T ss_dssp HHHHHHHHTC-CSEEEEECCSS----SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEECCCCTT
T ss_pred HHHHhhhccc-CceEEEEeCCC----CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEEecCCHH
Confidence 7789998854 79999999875 2799999998765 47899999999753 4677999999999988765433
Q ss_pred ---CceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcc
Q 010235 289 ---GCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVS 365 (514)
Q Consensus 289 ---~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (514)
...+||||||+++++|+++|++|.+++.+.. .... .+. .+...
T Consensus 226 ~~~~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~---------~~~~----~~g--~~~~~------------------- 271 (381)
T 1t6e_X 226 ALATGGVMLSTRLPYVLLRPDVYRPLMDAFTKAL---------AAQH----ANG--APVAR------------------- 271 (381)
T ss_dssp CSCTTCEEECSSCSSEEECHHHHHHHHHHHHHHH---------HHC-------------CC-------------------
T ss_pred HccCCCEEEECCCccEEeCHHHHHHHHHHHHHhh---------cccc----ccc--ccccc-------------------
Confidence 3569999999999999999999999886540 0000 000 00000
Q ss_pred cccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCC---------
Q 010235 366 MGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL--------- 436 (514)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~--------- 436 (514)
.. ....+..+|...
T Consensus 272 --------------------------------------------------------~~-~~~~~~~~C~~~~~~~~~~~~ 294 (381)
T 1t6e_X 272 --------------------------------------------------------AV-EAVAPFGVCYDTKTLGNNLGG 294 (381)
T ss_dssp --------------------------------------------------------EE-CCCTTCSCEEEGGGCCEETTE
T ss_pred --------------------------------------------------------cC-CCCCCCCccCCCCCCcccccC
Confidence 00 000011233222
Q ss_pred CCCCcEEEEEC-CEEEEeCcccceeeecCCCCceeeeeeEecccC---CCCCCeeeeChhhhcCeEEEEECCCCeEEEEE
Q 010235 437 SSLPIVSFTIG-GKIFDLTPDQYILKVGEGDAAQCISGFSALDVA---PPRGPLWILGDVFMGPYHTVFDYSNMRVGFAE 512 (514)
Q Consensus 437 ~~~P~i~f~~g-g~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~---~~~~~~~iLG~~fl~~~y~vfD~~~~riGfa~ 512 (514)
..+|+|+|+|+ |++++|++++|+++..+ ...|+ +|+..+.. ...++.||||+.|||++|+|||++++|||||+
T Consensus 295 ~~~P~i~f~f~gg~~~~l~~~~y~~~~~~--~~~Cl-~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~ 371 (381)
T 1t6e_X 295 YAVPNVQLGLDGGSDWTMTGKNSMVDVKQ--GTACV-AFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371 (381)
T ss_dssp ECCCCEEEEETTSCEEEECHHHHEEEEET--TEEEE-SEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcCCeEEEEECCCcEEEeCCCeEEEEcCC--CeEEE-EEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEec
Confidence 26899999997 59999999999998643 36898 57654311 01235799999999999999999999999999
Q ss_pred cC
Q 010235 513 AA 514 (514)
Q Consensus 513 a~ 514 (514)
++
T Consensus 372 ~~ 373 (381)
T 1t6e_X 372 LP 373 (381)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=1.2e-47 Score=371.12 Aligned_cols=237 Identities=70% Similarity=1.185 Sum_probs=216.6
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccceE
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGAI 157 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~~ 157 (514)
..+||.|+.+.+|+++|.||||||++.|+|||||+++||+|..|..+..|..++.|+|++|+||+..++.+.+.|++|++
T Consensus 3 ~~~~l~n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~ 82 (239)
T 1b5f_A 3 AVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGSI 82 (239)
T ss_dssp EEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEE
T ss_pred ceeeeeecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCcE
Confidence 46899999999999999999999999999999999999999999655689989999999999999999999999999999
Q ss_pred EEEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCC
Q 010235 158 SGFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNAD 237 (514)
Q Consensus 158 ~G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~ 237 (514)
.|.+++|+|++++..++++.||++....+..|....++||||||++..+ .|++++|++||.|++++||+||.+..+
T Consensus 83 ~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~~~~s----~p~~~~l~~qg~i~~~~FS~~l~~~~~ 158 (239)
T 1b5f_A 83 TGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSFQTIS----VPVWYNMLNQGLVKERRFSFWLNRNVD 158 (239)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSCCSSS----CCHHHHHHHTTCCSSSEEEEEECCSCS
T ss_pred EEEEEEEEEEECCcEEccEEEEEEEeccCccccccCcceEEecCccccc----cHHHHHHHHCCCCCCCEEEEEEeCCCC
Confidence 9999999999999999999999998876544556678999999998766 578899999999999999999988643
Q ss_pred CCCCcEEEECccCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcC
Q 010235 238 EEEGGEIVFGGMDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGA 317 (514)
Q Consensus 238 ~~~~G~L~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~ 317 (514)
....|.|+|||+|++++.|++.|+|+.+.++|.|.+++|.|+++.+.++.....++|||||+++++|++++++|.+++++
T Consensus 159 ~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 159 EEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp SSCCEEEEETSCCGGGEEEEEEEEEEEEETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCcChhhccCceEEEEcccCCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 34589999999999999999999999988999999999999999876666678999999999999999999999999986
Q ss_pred c
Q 010235 318 T 318 (514)
Q Consensus 318 ~ 318 (514)
+
T Consensus 239 ~ 239 (239)
T 1b5f_A 239 N 239 (239)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=6.2e-44 Score=345.75 Aligned_cols=241 Identities=47% Similarity=0.910 Sum_probs=210.3
Q ss_pred CceeecccEEEEEEeeCCcccccccceeeeecccccccCCCCCcHHHHHHHcCCCCCCEEEEEecCCCCCCCCcEEEECc
Q 010235 169 GDLVVKDQEFIEATREPSLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVNQGLVNEPVFSFWFNRNADEEEGGEIVFGG 248 (514)
Q Consensus 169 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg 248 (514)
|+++++++.||+++...+..|....++||||||++..+....++++++|++||.|++++||+||.+..+....|.|+|||
T Consensus 1 gg~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg 80 (241)
T 1lya_B 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGG 80 (241)
T ss_dssp CCEEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETS
T ss_pred CCeEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECC
Confidence 56788999999999876655666778999999999888767788999999999999999999998874333479999999
Q ss_pred cCCCCCccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHHHHHHHHHHhcCccccccchhhh
Q 010235 249 MDPDHYKGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTTIITQVNHAIGATGIVSQECKAV 328 (514)
Q Consensus 249 ~d~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~~~~~l~~~l~~~~~~~~~c~~~ 328 (514)
+|+++|+|++.|+|+.+.++|.|.+++|++++..+. +.....++|||||+++++|++++++|.+++++..
T Consensus 81 ~d~~~~~g~l~~~p~~~~~~~~v~l~~i~v~~~~~~-~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~--------- 150 (241)
T 1lya_B 81 TDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTL-CKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVP--------- 150 (241)
T ss_dssp CCGGGEEEEEEEEECSSBTTBEEEEEEEEETTSCEE-STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE---------
T ss_pred cCHHHcCCceEEEECccccEEEEEEeEEEECCeeEe-ccCCCEEEEECCCccccCCHHHHHHHHHHhCCee---------
Confidence 999999999999999999999999999999998753 4567899999999999999999999999997651
Q ss_pred hhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHHHHHHhhhhhhhH
Q 010235 329 VSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVVWMQNQLKQNQTQ 408 (514)
Q Consensus 329 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (514)
T Consensus 151 -------------------------------------------------------------------------------- 150 (241)
T 1lya_B 151 -------------------------------------------------------------------------------- 150 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhcccCCCCCCCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeee
Q 010235 409 ERILNYVNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWI 488 (514)
Q Consensus 409 ~~~~~~~~~~c~~~~~~~~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~i 488 (514)
...|.|.++|+.+..+|+|+|+|+|++++|+|++|+++..+.+...|+++|+..+.+++.++.||
T Consensus 151 ---------------~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~i 215 (241)
T 1lya_B 151 ---------------LIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWI 215 (241)
T ss_dssp ---------------EETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEE
T ss_pred ---------------ccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEE
Confidence 11356899999877899999999999999999999998765445789999987765444557899
Q ss_pred eChhhhcCeEEEEECCCCeEEEEEcC
Q 010235 489 LGDVFMGPYHTVFDYSNMRVGFAEAA 514 (514)
Q Consensus 489 LG~~fl~~~y~vfD~~~~riGfa~a~ 514 (514)
||++|||++|+|||++++|||||+++
T Consensus 216 lG~~fl~~~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 216 LGDVFIGRYYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp ECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred echHHhcceEEEEECCCCEEEEEEcC
Confidence 99999999999999999999999985
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.89 E-value=4.6e-23 Score=169.41 Aligned_cols=93 Identities=66% Similarity=1.122 Sum_probs=86.8
Q ss_pred cEEeceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCC-CcccCCCCcccCCCCCcceeCCceEEEEeccce
Q 010235 78 DIVALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYF-SIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA 156 (514)
Q Consensus 78 ~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~-~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~ 156 (514)
..+||.|+.+.+|+++|.||||||+|.|+|||||+++||++..|.. ...|..++.|+|++|+||+..++.|.+.|++|+
T Consensus 3 ~~~~l~n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~~~y~p~~SsT~~~~~~~~~i~Yg~Gs 82 (97)
T 1lya_A 3 IPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGS 82 (97)
T ss_dssp EEEEEEEETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE
T ss_pred ceEeeEECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCCCCCCchhCCCceeCCCcEEEEECCcE
Confidence 3589999999999999999999999999999999999999999952 247988999999999999999999999999999
Q ss_pred EEEEEEEEEEEECc
Q 010235 157 ISGFFSEDHVKIGD 170 (514)
Q Consensus 157 ~~G~~~~D~v~ig~ 170 (514)
+.|.+++|+|+|++
T Consensus 83 ~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 83 LSGYLSQDTVSVPC 96 (97)
T ss_dssp EEEEEEEEEEEESC
T ss_pred EEEEEEEEEEEECC
Confidence 99999999999986
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.83 E-value=1.1e-20 Score=152.49 Aligned_cols=87 Identities=74% Similarity=1.246 Sum_probs=76.9
Q ss_pred CCeeecCCCCCCCCcEEEEECCEEEEeCcccceeeecCCCCceeeeeeEecccCCCCCCeeeeChhhhcCeEEEEECCCC
Q 010235 427 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGEGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNM 506 (514)
Q Consensus 427 ~~~~~~C~~~~~~P~i~f~~gg~~~~i~~~~y~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~ 506 (514)
|.|.+||+.+..+|+|+|+|+|++++|+|++|+++....+...|+++|++.+.+ +.++.||||++|||++|+|||++++
T Consensus 1 G~y~v~C~~~~~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~-~~~~~~ILGd~Fl~~~y~vfD~~~~ 79 (87)
T 1b5f_B 1 EELQVDCNTLSSMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDAT-LLGPLWILGDVFMRPYHTVFDYGNL 79 (87)
T ss_dssp CCCEECGGGGGGCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCB-SSSBEEEECHHHHTTEEEEEETTTT
T ss_pred CcEEEECCCCCcCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCC-CCCCeEEechHHhccEEEEEECCCC
Confidence 579999998888999999999999999999999987654456899999987643 3456899999999999999999999
Q ss_pred eEEEEEcC
Q 010235 507 RVGFAEAA 514 (514)
Q Consensus 507 riGfa~a~ 514 (514)
|||||+++
T Consensus 80 riGfA~~~ 87 (87)
T 1b5f_B 80 LVGFAEAA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999985
No 38
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=99.54 E-value=2.6e-15 Score=125.27 Aligned_cols=106 Identities=51% Similarity=0.917 Sum_probs=76.7
Q ss_pred CccccccchhhhhhhhhHHHHHHhhccCCccchhccCcccccCCCCCcccccccccccCCcCCCCCCCCcccchhHHHHH
Q 010235 317 ATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFDGSRGVSMGIESVVPENNHRASGGFHDAMCSTCEMAVV 396 (514)
Q Consensus 317 ~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+++.+...|+.++++|++.+++++.+...|..+|.+.|+|..++.+.+++++++++++.+..++ ..++..|.+|+|+++
T Consensus 3 a~g~~~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~~lglC~~~~~~~~~~~i~~vv~~~~~~~~-~~~~~~C~~Ce~~V~ 81 (108)
T 3rfi_A 3 AMAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSS-VGEAPLCTACEMAVV 81 (108)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSSCC-------------------------CCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCcCCCccccccccccccccccccccc-CCCCCcChhHHHHHH
Confidence 4455678899999999999999999999999999999999999988888888888877643332 247899999999999
Q ss_pred HHHHhhhhhhhHHHHHHhhhhhcccCC
Q 010235 397 WMQNQLKQNQTQERILNYVNELCDRLP 423 (514)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~c~~~~ 423 (514)
|++++|++|.|+++|+++++++|.++|
T Consensus 82 ~ie~~L~~N~Te~eI~~~l~k~C~~LP 108 (108)
T 3rfi_A 82 WMQNQLKQEGTKEKVLEYVNQLCEKIP 108 (108)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999876
No 39
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=96.37 E-value=0.002 Score=49.70 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=41.2
Q ss_pred CcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCC
Q 010235 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCS 434 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~ 434 (514)
+..|..|++++.++++.|+.|.|+++|.+.+++.|..+|.+ +...|.
T Consensus 2 ~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~~---~~~~C~ 48 (80)
T 3bqp_A 2 GGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDP---YQKQCD 48 (80)
T ss_dssp CTTHHHHHHHHHHHHHHSCTTCCHHHHHHHHHHHGGGSCGG---GHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhCCCc---cchhhH
Confidence 45799999999999999999999999999999999999863 444564
No 40
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=96.25 E-value=0.0019 Score=51.35 Aligned_cols=48 Identities=27% Similarity=0.677 Sum_probs=42.0
Q ss_pred CCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCC
Q 010235 384 HDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCS 434 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~ 434 (514)
.+..|..|++++.++++.|++|.|+++|.+.+.++|..+|.. +...|.
T Consensus 4 ~~~~C~~C~~vv~~i~~~l~~n~t~~~I~~~l~~~C~~lp~~---~~~~C~ 51 (91)
T 2qyp_A 4 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKS---LSEECQ 51 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTSCSS---TTTTHH
T ss_pred CCCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHCCCC---cccchH
Confidence 457899999999999999999999999999999999999864 344564
No 41
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=95.92 E-value=0.0053 Score=47.81 Aligned_cols=40 Identities=40% Similarity=0.724 Sum_probs=37.5
Q ss_pred cccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCC
Q 010235 386 AMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 425 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 425 (514)
..|..|++++.++.+.++.|.|+++|.+.+.+.|..+|..
T Consensus 4 ~~C~~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C~~lp~~ 43 (83)
T 4ddj_A 4 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKP 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTSCTT
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHhCCCc
Confidence 4699999999999999999999999999999999999864
No 42
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=95.01 E-value=0.012 Score=44.62 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=35.3
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCC
Q 010235 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS 424 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
.|.+|+++++.+.+.+ +|.|++.|...+.+.|..+|.
T Consensus 3 ~C~~C~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l~~ 39 (74)
T 1l9l_A 3 DYRTCLTIVQKLKKMV-DKPTQRSVSNAATRVCRTGRS 39 (74)
T ss_dssp HHHHHHHHHHHHHHHC-SSCCHHHHHHHHHHGGGSSCH
T ss_pred CChHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHhCCh
Confidence 6999999999999999 999999999999999999874
No 43
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=94.90 E-value=0.016 Score=44.99 Aligned_cols=41 Identities=29% Similarity=0.696 Sum_probs=37.7
Q ss_pred CCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCC
Q 010235 384 HDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS 424 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
+...|..|++++.++.+.++.|.|+++|.+.+.+.|..+|.
T Consensus 3 ~~~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lp~ 43 (83)
T 2gtg_A 3 SDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPK 43 (83)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTSSCH
T ss_pred CCCcChhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHCCC
Confidence 35689999999999999999999999999999999999874
No 44
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=94.55 E-value=0.018 Score=44.10 Aligned_cols=40 Identities=18% Similarity=0.559 Sum_probs=36.8
Q ss_pred CcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCC
Q 010235 385 DAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSP 425 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 425 (514)
...|..|+++++++.+.+..| |++.|.+.+.+.|..+|..
T Consensus 2 ~~~C~~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C~~lp~~ 41 (77)
T 1of9_A 2 EILCNLCTGLINTLENLLTTK-GADKVKDYISSLCNKASGF 41 (77)
T ss_dssp CSSHHHHHHHHHHHHHHCSSS-CSHHHHHHHHHHHTTCSST
T ss_pred CCcchhHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHcCChH
Confidence 357999999999999999999 9999999999999999753
No 45
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=94.07 E-value=0.022 Score=43.68 Aligned_cols=38 Identities=13% Similarity=0.521 Sum_probs=36.4
Q ss_pred ccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCC
Q 010235 387 MCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPS 424 (514)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 424 (514)
.|..|+++++++.+.+.+|.|+++|.+.+.+.|..+|.
T Consensus 3 ~C~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~lp~ 40 (78)
T 1nkl_A 3 FCESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKLKI 40 (78)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCS
T ss_pred cchHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCch
Confidence 69999999999999999999999999999999999874
No 46
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=94.02 E-value=0.031 Score=43.21 Aligned_cols=39 Identities=31% Similarity=0.559 Sum_probs=37.0
Q ss_pred cccchhHHHHHHHHHhhhhhhhH-HHHHHhhhhhcccCCC
Q 010235 386 AMCSTCEMAVVWMQNQLKQNQTQ-ERILNYVNELCDRLPS 424 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~~~~ 424 (514)
..|..|+++++.+.+.+..|.|+ ++|.+.+.+.|..+|.
T Consensus 4 ~~C~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~C~~lp~ 43 (81)
T 1n69_A 4 DVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGP 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCT
T ss_pred CcchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999 9999999999999984
No 47
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=93.91 E-value=0.052 Score=42.86 Aligned_cols=39 Identities=38% Similarity=0.831 Sum_probs=34.8
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccccC
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCTFD 359 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (514)
+...|+.+++.|++.+++.+.+..+|..+|...++|..+
T Consensus 46 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~~~ 84 (91)
T 2qyp_A 46 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGT 84 (91)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHTTTCC---
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCCCc
Confidence 678999999999999999999999999999999999765
No 48
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.085 Score=45.59 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=52.8
Q ss_pred eceeccCceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccce--EE
Q 010235 81 ALKNYMDAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTGA--IS 158 (514)
Q Consensus 81 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G~--~~ 158 (514)
|..-.....+++++.|+ ++++++++|||++.+.+..... ..+.-....+.. +. ....+.|. ..
T Consensus 18 p~~~~~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~~~a---~~lgl~~~~~~~----~~------~~a~g~g~~~~~ 82 (148)
T 2i1a_A 18 PEMFTQVPMLYINIEIN--NYPVKAFVDTGAQTTIMSTRLA---KKTGLSRMIDKR----FI------GEARGVGTGKII 82 (148)
T ss_dssp -----CCCCCEEEEEET--TEEEEEEECTTCSSCEEEHHHH---HHHTGGGGCBCC----CC-----------------C
T ss_pred chhhcccceEEEEEEEC--CEEEEEEEECCCCccccCHHHH---HHcCCCccCCcc----eE------EEEecCCCcccc
Confidence 33333456789999998 5899999999999998853211 111111111111 00 01122221 34
Q ss_pred EEEEEEEEEECceeecccEEEEEEeeCCcccccccceeeeecc
Q 010235 159 GFFSEDHVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (514)
Q Consensus 159 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 201 (514)
|.+..+.+.+|+...+ ..|.+.. . +.+||||+.
T Consensus 83 ~~~~~~~i~ig~~~~~-~~~~vl~--~-------~~d~iLG~d 115 (148)
T 2i1a_A 83 GRIHQAQVKIETQYIP-CSFTVLD--T-------DIDVLIGLD 115 (148)
T ss_dssp EEEEEEEEEETTEEEE-EEEEEEC--S-------SCSEEECHH
T ss_pred cEEEEEEEEECCEEec-eeEEEec--C-------CCCeEecHH
Confidence 6667789999998764 5555433 1 358999996
No 49
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=92.66 E-value=0.044 Score=41.96 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=35.1
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccc
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
+...|+.+++.|.+.+++++.++.+|..+|...++|.
T Consensus 41 ~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC~ 77 (78)
T 1nkl_A 41 LRGLCKKIMRSFLRRISWDILTGKKPQAICVDIKICK 77 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhccCCCC
Confidence 6778999999999999999999999999999999994
No 50
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=92.53 E-value=0.046 Score=41.82 Aligned_cols=37 Identities=27% Similarity=0.707 Sum_probs=35.0
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccc
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
+...|+.+++.|++.+++.+.+...|..+|...++|.
T Consensus 43 ~~~~C~~~v~~y~~~ii~~l~~~~~P~~iC~~l~~C~ 79 (80)
T 3bqp_A 43 YQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKIGACP 79 (80)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHTTSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHCCCHHHHHhhcCCCC
Confidence 5778999999999999999999999999999999995
No 51
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=92.27 E-value=0.045 Score=44.03 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=35.4
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCccchhccCcccc
Q 010235 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
++...|+.+++.|.+.+++++..+.+|..+|.+.++|+
T Consensus 62 f~~~~C~~~V~~y~~~II~~L~~~~~P~~VC~~L~lC~ 99 (99)
T 2js9_A 62 FGTRECDHYVNSKVDPIIHELEGGTAPKDVCTKLNECP 99 (99)
T ss_dssp THHHHHHTTTTTTHHHHHHHHHHTCCTTHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Confidence 35778999999999999999999999999999999994
No 52
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=91.76 E-value=0.52 Score=40.51 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=23.5
Q ss_pred eeeeChhhhcCeEEEEECCCCeEEEE
Q 010235 486 LWILGDVFMGPYHTVFDYSNMRVGFA 511 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa 511 (514)
..|||..||+++-+.+|+.++++-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 36999999999999999999998773
No 53
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=91.74 E-value=0.023 Score=45.71 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=42.9
Q ss_pred CCCcccchhHHHHHHHHHhhhhhhhHHHHHHhhhhhcccCCCCCCCeeecCCCC
Q 010235 383 FHDAMCSTCEMAVVWMQNQLKQNQTQERILNYVNELCDRLPSPMGESAVDCSRL 436 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~C~~~ 436 (514)
.....|..|+++++++.+.+ |.|+++|.+.+.+.|..+|.....+.-.|..+
T Consensus 19 ~~~~~C~~C~~vV~~ve~~l--n~t~~~I~~~L~~~C~~lp~~ipf~~~~C~~~ 70 (99)
T 2js9_A 19 RSALSCQMCELVVKKYEGSA--DKDANVIKKDFDAECKKLFHTIPFGTRECDHY 70 (99)
T ss_dssp CCSSTHHHHHHHHHHHTTTS--SCCHHHHHHHHHHHHHTGGGGSTTHHHHHHTT
T ss_pred CCCCcchhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 35678999999999999999 88999999999999999885433355567643
No 54
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=91.49 E-value=0.052 Score=41.49 Aligned_cols=37 Identities=22% Similarity=0.512 Sum_probs=34.4
Q ss_pred ccccchhhhhhhhhHHHHHHhhccCCccchhccCccc
Q 010235 320 IVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (514)
Q Consensus 320 ~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 356 (514)
.+...|+.+++.|.+.+++++.+..+|..+|...++|
T Consensus 41 ~~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~lC 77 (77)
T 1of9_A 41 FIATLCTKVLDFGIDKLIQLIEDKVDANAICAKIHAC 77 (77)
T ss_dssp TTHHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCCC
Confidence 3567899999999999999999999999999999988
No 55
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=91.39 E-value=0.069 Score=41.27 Aligned_cols=37 Identities=41% Similarity=0.923 Sum_probs=34.8
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccc
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
+...|+.+++.|++.+++.+.+...|..+|...++|.
T Consensus 45 ~~~~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~lC~ 81 (83)
T 2gtg_A 45 LSEECQEVVDTYGSSILSILLEEVSPELVCSMLHLCS 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHCCCHHHHHHhcCCCC
Confidence 5678999999999999999999999999999999995
No 56
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=89.26 E-value=0.11 Score=40.02 Aligned_cols=37 Identities=30% Similarity=0.761 Sum_probs=34.0
Q ss_pred cccchhhhhhhhhHHHHHHhhcc-CCccchhccCcccc
Q 010235 321 VSQECKAVVSQYGEEIINMLLAK-DEPQKICSQIGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~-~~~~~~~~~~~~~~ 357 (514)
+...|+.+++.|++.+++.+.+. ..|..+|...++|.
T Consensus 45 ~~~~C~~~v~~y~~~ii~~l~~~~~~p~~vC~~l~lC~ 82 (83)
T 4ddj_A 45 MSASCKEIVDSYLPVILDIIKGEMSRPGEVCSALNLCE 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCHHHHHhHcCCCC
Confidence 46789999999999999999998 59999999999995
No 57
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=89.14 E-value=0.49 Score=40.88 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=54.2
Q ss_pred CceEEEEEEecCCCceEEEEeeCCCCceeeeCCCCCCCcccCCCCcccCCCCCcceeCCceEEEEeccc--eEEEEEEEE
Q 010235 87 DAQYFGEIGIGTPPQNFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYRSGRSSTYKKNGKSADIHYGTG--AISGFFSED 164 (514)
Q Consensus 87 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~~~Y~~G--~~~G~~~~D 164 (514)
...|++++.|+ ++++++++|||++.+.+... |. ..|+-...-+. . +. ....+-| ...|.+...
T Consensus 22 ~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~-~A--~rlGL~~~~~~-~---~~------~~a~g~G~~~~~g~v~~~ 86 (148)
T 3s8i_A 22 VTMLYINCKVN--GHPLKAFVDSGAQMTIMSQA-CA--ERCNIMRLVDR-R---WA------GVAKGVGTQRIIGRVHLA 86 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH-HH--HHTTCGGGEEG-G---GC------EECCC---CEEEEEEEEE
T ss_pred cCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH-HH--HHcCCccccCc-c---ee------EEEEcCCccEEEEEEEEE
Confidence 45689999998 59999999999999998643 21 12221110000 0 00 0111222 246777788
Q ss_pred EEEECceeecccEEEEEEeeCCcccccccceeeeecc
Q 010235 165 HVKIGDLVVKDQEFIEATREPSLTFLLAKFDGILGLG 201 (514)
Q Consensus 165 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg 201 (514)
.+.+|+..++ ..|.+.. ....++|||+-
T Consensus 87 ~I~Ig~~~~~-~~~~Vle--------~~~~d~LLGmD 114 (148)
T 3s8i_A 87 QIQIEGDFLQ-CSFSILE--------DQPMDMLLGLD 114 (148)
T ss_dssp EEEETTEEEE-EEEEEET--------TCSSSEEECHH
T ss_pred EEEECCEEEE-EEEEEeC--------CCCcCeeccHH
Confidence 9999997653 4444432 12347999995
No 58
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=88.09 E-value=0.76 Score=39.68 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=23.3
Q ss_pred eeeeChhhhcCeEEEEECCCCeEEEE
Q 010235 486 LWILGDVFMGPYHTVFDYSNMRVGFA 511 (514)
Q Consensus 486 ~~iLG~~fl~~~y~vfD~~~~riGfa 511 (514)
..|||..||+.+-.+.|++++++-|.
T Consensus 108 d~LLGmD~L~~~~~~ID~~~~~L~l~ 133 (148)
T 3s8i_A 108 DMLLGLDMLRRHQCSIDLKKNVLVIG 133 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEECT
T ss_pred CeeccHHHHHhCCEEEEcCCCEEEEc
Confidence 46999999999999999999998763
No 59
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=88.02 E-value=0.2 Score=37.81 Aligned_cols=33 Identities=24% Similarity=0.590 Sum_probs=30.3
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccC
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQI 353 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 353 (514)
+...|+.+++.|++++++.+.++.+|..+|..+
T Consensus 41 ~~~~C~~~V~~y~~~Ii~~L~~~~~P~~IC~~i 73 (74)
T 1l9l_A 41 WRDVCRNFMRRYQSRVIQGLVAGETAQQICEDL 73 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhc
Confidence 566899999999999999999999999999764
No 60
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=87.97 E-value=0.18 Score=38.70 Aligned_cols=36 Identities=36% Similarity=0.860 Sum_probs=32.1
Q ss_pred cccchhhhhhhhhHHHHHHhhccCCccchhccCcccc
Q 010235 321 VSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLCT 357 (514)
Q Consensus 321 ~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (514)
+...|+.++++|++.+++.+. ...|..+|.+.|+|.
T Consensus 45 ~~~~C~~~V~~y~~~ii~~l~-~~~P~~iC~~lglC~ 80 (81)
T 1n69_A 45 MADICKNYISQYSEIAIQMMM-HMQPKEICALVGFCD 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHhhcCCCC
Confidence 567899999999998888776 699999999999995
No 61
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=77.76 E-value=2.7 Score=33.47 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.9
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCCCC
Q 010235 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
++.|.|| +|.+++++|||.+++-+...+.
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~~ 38 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMSL 38 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCSS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEecccC
Confidence 5779999 6999999999999999976544
No 62
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=76.73 E-value=2.3 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=23.3
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeee
Q 010235 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVP 117 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~ 117 (514)
-++.|.|| +|.+++++|||.+++-+.
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~ 34 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLT 34 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEE
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEc
Confidence 36789999 699999999999999987
No 63
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=73.09 E-value=4.3 Score=32.25 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=24.9
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCCCC
Q 010235 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
++.|.|| +|.+.+++|||.+++-+...+.
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~~ 38 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIEL 38 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCccc
Confidence 6779999 6999999999999999965544
No 64
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=71.85 E-value=3.3 Score=32.09 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=41.0
Q ss_pred HHHHHHHHHh-cCccccccchhhhhhhhhHHHHHHhhccCCccchhccCccc
Q 010235 306 TIITQVNHAI-GATGIVSQECKAVVSQYGEEIINMLLAKDEPQKICSQIGLC 356 (514)
Q Consensus 306 ~~~~~l~~~l-~~~~~~~~~c~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 356 (514)
..+++.=+.+ ++..+.+..|..+++.|...|+..+..+.+|..+|..+..|
T Consensus 36 ~~~d~~Ckk~~~~ip~a~k~C~~~v~~~~d~II~eLe~g~~P~~VC~~L~~C 87 (87)
T 3s64_A 36 KEFIQGCMTLIGWLPYAEKECKALAKIEMGAIKTLLENGSAPEEICTTLHAC 87 (87)
T ss_dssp HHHHHHHHHHHCSSTTHHHHHHHHHHHHHHHHHHHHHTTCCTTTHHHHHHCC
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHhccC
Confidence 3444444444 55556678999999999999999999999999999988776
No 65
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=68.87 E-value=4.1 Score=33.15 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.2
Q ss_pred EEEEEec---CCCceEEEEeeCCCCceeeeCCCCC
Q 010235 91 FGEIGIG---TPPQNFTVIFDTGSSNLWVPSSKCY 122 (514)
Q Consensus 91 ~~~i~iG---tP~Q~~~v~~DTGSs~~wv~~~~C~ 122 (514)
.+.|.|| +|+|.+..++|||.+++-+...++.
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~lP 46 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALFS 46 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGSC
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccCC
Confidence 4566665 8899999999999999999866653
No 66
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=62.37 E-value=6.6 Score=32.16 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=22.4
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCC
Q 010235 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSS 119 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~ 119 (514)
++ |.|| +|.+++++|||.+++-+...
T Consensus 16 ~v-ikI~--Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 16 IL-IFVN--GYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp EE-EEET--TEEEEEEECTTCSSCEEEGG
T ss_pred EE-EEEC--CEEEEEEecCCCCcEEEccc
Confidence 44 9999 69999999999999998743
No 67
>3vcm_P Prorenin; aspartic proteases, hydrolase; HET: NAG; 2.93A {Homo sapiens}
Probab=59.30 E-value=7.2 Score=25.64 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=19.8
Q ss_pred ceEEEeccccCCchhhhhhhcccc
Q 010235 29 GLYRIGLKKRKFDLNNRVAARLDS 52 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~~ 52 (514)
+++||||.|.++.++...+.+...
T Consensus 7 ~l~RIPL~k~kS~R~~l~e~g~~~ 30 (43)
T 3vcm_P 7 TFKRIFLKRMPSIRESLKERGVDM 30 (43)
T ss_dssp CCEEEEEEECCCHHHHHHHHTCCG
T ss_pred ceeEEeeeecccHHHHHHHcCchH
Confidence 578999999999998888876543
No 68
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=55.66 E-value=11 Score=30.74 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.9
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCCCC
Q 010235 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
.+.|.|| +|.+..++|||.+++-+...+.
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~l 39 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLEDW 39 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGGS
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEecccC
Confidence 5678999 6999999999999999976554
No 69
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=53.24 E-value=15 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.7
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCC
Q 010235 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSK 120 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~ 120 (514)
-++.+.|+ +|.+.+++|||.+++-+...+
T Consensus 23 P~v~i~I~--G~~~~~LlDTGAd~tVl~~~~ 51 (132)
T 3slz_A 23 PRITLKVG--GQPVTFLVDTGAQHSVLTQNP 51 (132)
T ss_dssp SEEEEEET--TEEEEEEECTTCSSCEECSCC
T ss_pred CEEEEEEC--CEEEEEEEeCCCCeEEEcccc
Confidence 46779999 699999999999999997544
No 70
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=42.69 E-value=20 Score=32.35 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=24.6
Q ss_pred EEEEEEecCCCceEEEEeeCCCCceeeeCCC
Q 010235 90 YFGEIGIGTPPQNFTVIFDTGSSNLWVPSSK 120 (514)
Q Consensus 90 Y~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~ 120 (514)
-.+.|.|| +|.+.+++|||.+++-+...+
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEELN 37 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECSCC
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEeccc
Confidence 46789999 699999999999999986433
No 71
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=41.08 E-value=25 Score=29.00 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.1
Q ss_pred ecCCCceEEEEeeCCCCceeeeCCCC
Q 010235 96 IGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 96 iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
|| +|.+.+++|||.+++-+...+.
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~l 50 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEEDW 50 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTTS
T ss_pred CC--CEEEEEEecCCCCcEEEecccC
Confidence 55 5888999999999999986554
No 72
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=36.65 E-value=37 Score=32.67 Aligned_cols=42 Identities=26% Similarity=0.217 Sum_probs=30.1
Q ss_pred ccceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 255 KGEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 255 ~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
.|.+...|+.....|.++ |.||.+.+ .++||||++.+++|..
T Consensus 3 ~g~v~~~~~~~~~~Y~~~---i~iG~Q~~-------~v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 3 SGVATNTPTANDEEYITP---VTIGGTTL-------NLNFDTGSADLWVFST 44 (323)
T ss_dssp CEEEEEEECGGGSCEEEE---EEETTEEE-------EEEEETTCCCEEECBT
T ss_pred CCceeeeecCCCCEEEEE---EEECCEEE-------EEEEeCCCcceEEecC
Confidence 355666777666677654 67784433 4899999999999964
No 73
>1htr_P Progastricsin (Pro segment); aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_P
Probab=35.32 E-value=18 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.055 Sum_probs=17.5
Q ss_pred ceEEEeccccCCchhhhhhhccc
Q 010235 29 GLYRIGLKKRKFDLNNRVAARLD 51 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~~~ 51 (514)
+++||||+|.++.++.+.+.+..
T Consensus 1 ~l~RIpL~K~~s~R~~l~~~g~~ 23 (43)
T 1htr_P 1 AVVKVPLKKFKSIRETMKEKGLL 23 (43)
T ss_dssp CCEEEEEEECCCHHHHHHHTTCH
T ss_pred CeEEEeeeEcchHHHHHHHcCcH
Confidence 36899999998888877665543
No 74
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=35.07 E-value=39 Score=32.51 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=29.4
Q ss_pred cceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
|.+...|+.....|.++ |.||.+.+ .++||||++.+++|..
T Consensus 3 ~~v~~~~~~~~~~Y~~~---i~iG~Q~~-------~v~~DTGSs~lWv~~~ 43 (325)
T 1ibq_A 3 GSAVTTPQNNDEEYLTP---VTVGKSTL-------HLDFDTGSADLWVFSD 43 (325)
T ss_dssp EEEEEEECTTTSCEEEE---EEEBTEEE-------EEEEETTCCCEEEECT
T ss_pred ceEEeEEcCCCCEEEEE---EEECCEEE-------EEEEeCCCccceEeeC
Confidence 45566676666677654 57774433 4899999999999864
No 75
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=33.85 E-value=43 Score=32.16 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=29.3
Q ss_pred cceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 256 GEHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
|.+...|+.....|.++ |.||.+. ..++||||++.+++|..
T Consensus 4 ~~v~~~~~~~~~~Y~~~---i~iG~q~-------~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 4 GSVTTNPTSNDEEYITQ---VTVGDDT-------LGLDFDTGSADLWVFSS 44 (323)
T ss_dssp EEEEEEECGGGCCEEEE---EEETTEE-------EEEEEETTCCCEEECBT
T ss_pred CceeeeEcCCCCEEEEE---EEECCEE-------EEEEEcCCCcceEEecC
Confidence 45566676666667654 6777433 34899999999999964
No 76
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=33.57 E-value=29 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=21.1
Q ss_pred cceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCH
Q 010235 267 GYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPT 305 (514)
Q Consensus 267 ~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~ 305 (514)
..|.+ .|.||.- .....++||||++.+++|.
T Consensus 13 ~~Y~~---~i~iGTP-----~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 13 AQYYG---EIGIGTP-----PQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp TEEEE---EEEETTT-----TEEEEEEEETTCCCEEEEB
T ss_pred CeEEE---EEEECCC-----CeEEEEEEeCCCCceEEeE
Confidence 44554 3567632 2234589999999999995
No 77
>1tzs_P Activation peptide from cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=33.36 E-value=17 Score=21.93 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=16.0
Q ss_pred ceEEEeccccCCchhhhhhhc
Q 010235 29 GLYRIGLKKRKFDLNNRVAAR 49 (514)
Q Consensus 29 ~~~~ipl~~~~~~~~~~~~~~ 49 (514)
+++||||+|..+.++.+.+.+
T Consensus 2 ~l~rIpL~K~~s~r~~l~~~g 22 (35)
T 1tzs_P 2 SLHRVPLRRHPSLKKKLRARS 22 (35)
T ss_pred cEEEEEeEEchHHHHHHHHcc
Confidence 478999999887777665544
No 78
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=24.53 E-value=68 Score=31.22 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=28.9
Q ss_pred ccceeEEeccC--ccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 255 KGEHTYVPVTQ--KGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 255 ~g~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
+|.+...|+.+ ...|.++ |.||.- .....++||||++.+++|..
T Consensus 4 ~g~~~~~~l~~~~~~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 4 DGSVDTPGLYDFDLEEYAIP---VSIGTP-----GQDFYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp -CCEEEEEEEETTTTEEEEE---EEETTT-----TEEEEEEEETTCCCCEEEBT
T ss_pred CCccceEEeecCCCCEEEEE---EEECCC-----CcEEEEEEcCCCCCeEECCC
Confidence 45666677754 4556554 567732 12345899999999999964
No 79
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=23.90 E-value=80 Score=30.29 Aligned_cols=43 Identities=21% Similarity=0.033 Sum_probs=27.8
Q ss_pred cceeEE-eccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 256 GEHTYV-PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~-p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
|.+... |......|.+ .|.||.- .....++||||++.+++|..
T Consensus 3 ~~v~~~~~~~~~~~Y~~---~i~iGTP-----~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 3 GSATTTPIDSLDDAYIT---PVQIGTP-----AQTLNLDFDTGSSDLWVFSS 46 (329)
T ss_dssp EEEEEEESSTTCCCEEE---EEEETTT-----TEEEEEEEETTCCCEEECBT
T ss_pred ceeEeeecCCCCCEEEE---EEEECCC-----CeEEEEEECCCCCCeEEecC
Confidence 344455 5555566765 4677732 12345899999999999964
No 80
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=22.04 E-value=91 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.029 Sum_probs=27.6
Q ss_pred cceeEE-eccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 256 GEHTYV-PVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 256 g~l~~~-p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
|.+... |......|.+ .|.||.- .....++||||++.+++|..
T Consensus 3 ~~v~~~~~~~~~~~Y~~---~i~iGTP-----~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 3c9x_A 3 GSAPNHPSDSADSEYIT---SVSIGTP-----AQVLPLDFDTGSSDLWVFSS 46 (329)
T ss_dssp EEEEEEESSTTCCCEEE---EEEETTT-----TEEEEEEEETTCCCEEECBT
T ss_pred cceeeecCCCCCCEEEE---EEEECCC-----CeEEEEEEcCCCCCeEEecC
Confidence 344455 4445556654 4677732 12345899999999999964
No 81
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=21.65 E-value=97 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.5
Q ss_pred EEEEEecCCCceEEEEeeCCCCceeeeCCCC
Q 010235 91 FGEIGIGTPPQNFTVIFDTGSSNLWVPSSKC 121 (514)
Q Consensus 91 ~~~i~iGtP~Q~~~v~~DTGSs~~wv~~~~C 121 (514)
.+.+.|| +|.+..++|||.+++-+...+.
T Consensus 114 ~~~iki~--Gq~~e~LlDTGAD~TVl~~~~l 142 (203)
T 3ka2_A 114 LVTIRIG--GQLKEALLDTGADDTVIEELNL 142 (203)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEECSCCC
T ss_pred cEEEEEC--CEEEeeeecccCCceeeecccC
Confidence 6789999 5999999999999999965443
No 82
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=20.70 E-value=1e+02 Score=29.46 Aligned_cols=42 Identities=17% Similarity=-0.035 Sum_probs=26.3
Q ss_pred ceeEEeccCccceEEEeceEEEcCeeeeeecCCceEEEcCCCCCcccCHH
Q 010235 257 EHTYVPVTQKGYWQFDMGDVMIDGQTTGFCAGGCAAIADSGTSLLAGPTT 306 (514)
Q Consensus 257 ~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aiiDSGtt~~~lP~~ 306 (514)
.+...+......|.++ |.||.- .....++||||++.+++|..
T Consensus 5 ~v~~~~~~~~~~Y~~~---i~iGTP-----~q~~~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 5 TVPMTDYGNDIEYYGQ---VTIGTP-----GKKFNLDFDTGSSDLWIAST 46 (325)
T ss_dssp EEEEEEETTTTEEEEE---EEETTT-----TEEEEEEEETTCCCCEEEBT
T ss_pred ceeeeecCCCCEEEEE---EEECCC-----CeEEEEEEcCCCCCEEEccC
Confidence 3344444445566554 567731 12345899999999999853
No 83
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=20.36 E-value=1e+02 Score=28.06 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=26.4
Q ss_pred EEeceeccCceEEEE---EEecCC-----CceEEEEeeCCCCceeeeC
Q 010235 79 IVALKNYMDAQYFGE---IGIGTP-----PQNFTVIFDTGSSNLWVPS 118 (514)
Q Consensus 79 ~~~l~n~~~~~Y~~~---i~iGtP-----~Q~~~v~~DTGSs~~wv~~ 118 (514)
.+|+.. ...|.++ |.||.- .....+++|||++.+++|.
T Consensus 181 ~~p~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~ 226 (239)
T 1b5f_A 181 YVPVTY--QYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPT 226 (239)
T ss_dssp EEEEEE--ETTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECH
T ss_pred EEEccc--CCeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCH
Confidence 456654 2456554 778752 2356899999999999975
Done!