Query 010236
Match_columns 514
No_of_seqs 800 out of 2467
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 22:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.7E-68 1E-72 545.0 59.1 436 74-509 367-859 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-67 2.4E-72 542.3 57.2 436 74-509 434-894 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.7E-65 5.8E-70 534.6 45.1 421 72-509 248-669 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.1E-64 4.6E-69 527.8 46.1 428 72-512 147-640 (857)
5 PLN03081 pentatricopeptide (PP 100.0 4.6E-64 1E-68 513.2 45.8 425 73-512 83-509 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.3E-60 2.8E-65 487.9 45.4 424 72-512 118-543 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.8E-27 1.3E-31 251.0 56.0 423 76-512 464-886 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-27 1.4E-31 250.6 52.6 402 76-490 498-899 (899)
9 PRK11788 tetratricopeptide rep 99.9 1.7E-21 3.6E-26 187.5 35.5 303 157-497 45-353 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.8E-21 8.2E-26 185.0 36.3 303 84-393 42-354 (389)
11 PRK11447 cellulose synthase su 99.9 1.4E-19 3.1E-24 195.0 51.9 399 84-494 276-744 (1157)
12 TIGR00990 3a0801s09 mitochondr 99.9 5.9E-19 1.3E-23 178.7 52.8 398 80-491 130-571 (615)
13 KOG4626 O-linked N-acetylgluco 99.9 1.9E-20 4E-25 172.5 34.0 370 111-497 115-489 (966)
14 PRK11447 cellulose synthase su 99.9 2.2E-18 4.9E-23 185.8 53.4 402 77-491 181-700 (1157)
15 PRK10049 pgaA outer membrane p 99.9 6.1E-19 1.3E-23 181.8 46.9 415 80-507 18-470 (765)
16 KOG4626 O-linked N-acetylgluco 99.9 1.1E-19 2.4E-24 167.4 34.6 379 77-472 116-500 (966)
17 PRK15174 Vi polysaccharide exp 99.9 2.3E-18 5E-23 173.8 47.7 331 81-421 46-381 (656)
18 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.8E-23 172.8 46.5 299 80-386 79-381 (656)
19 TIGR00990 3a0801s09 mitochondr 99.9 6.9E-17 1.5E-21 163.7 48.0 377 73-456 156-571 (615)
20 PRK14574 hmsH outer membrane p 99.9 2.9E-16 6.3E-21 159.1 48.7 406 87-504 44-524 (822)
21 PRK10049 pgaA outer membrane p 99.8 4.9E-16 1.1E-20 160.4 47.6 389 97-498 2-427 (765)
22 KOG4422 Uncharacterized conser 99.8 7.6E-17 1.7E-21 142.6 35.2 411 77-494 116-593 (625)
23 PRK09782 bacteriophage N4 rece 99.8 4.6E-15 1E-19 153.5 48.5 405 74-497 178-710 (987)
24 KOG2002 TPR-containing nuclear 99.8 1.6E-15 3.5E-20 147.5 39.7 427 75-511 268-730 (1018)
25 PRK09782 bacteriophage N4 rece 99.8 2.5E-14 5.5E-19 148.1 50.3 201 301-511 490-691 (987)
26 KOG4422 Uncharacterized conser 99.8 1.8E-14 3.9E-19 127.9 38.8 360 76-458 206-592 (625)
27 PRK14574 hmsH outer membrane p 99.8 7.5E-14 1.6E-18 141.8 46.3 368 82-456 73-513 (822)
28 KOG2002 TPR-containing nuclear 99.8 2E-14 4.4E-19 139.9 37.8 402 79-490 309-744 (1018)
29 KOG2003 TPR repeat-containing 99.7 3.6E-15 7.9E-20 133.1 26.8 207 298-511 501-708 (840)
30 KOG2076 RNA polymerase III tra 99.7 2E-12 4.3E-17 125.5 39.8 367 84-454 146-553 (895)
31 KOG2003 TPR repeat-containing 99.7 3.4E-13 7.3E-18 120.7 31.0 218 262-487 500-718 (840)
32 KOG2076 RNA polymerase III tra 99.7 5.3E-12 1.2E-16 122.6 38.3 360 114-488 141-509 (895)
33 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.4E-17 125.8 33.3 133 356-489 262-397 (409)
34 PRK10747 putative protoheme IX 99.6 1.4E-12 3E-17 124.4 33.4 290 160-489 97-388 (398)
35 KOG0495 HAT repeat protein [RN 99.6 9.9E-11 2.1E-15 109.9 43.5 398 83-490 412-879 (913)
36 KOG1155 Anaphase-promoting com 99.6 2.9E-11 6.3E-16 108.9 38.1 383 109-511 161-554 (559)
37 TIGR00540 hemY_coli hemY prote 99.6 2.5E-12 5.4E-17 123.5 33.6 290 124-419 96-397 (409)
38 PRK10747 putative protoheme IX 99.6 3.5E-12 7.6E-17 121.7 34.3 281 125-453 97-387 (398)
39 KOG1915 Cell cycle control pro 99.6 2E-10 4.3E-15 103.9 42.5 410 78-501 74-544 (677)
40 PF13429 TPR_15: Tetratricopep 99.6 3.6E-15 7.8E-20 136.0 12.2 224 258-488 50-274 (280)
41 PF13429 TPR_15: Tetratricopep 99.6 5.4E-15 1.2E-19 134.8 12.9 261 82-349 13-275 (280)
42 KOG0547 Translocase of outer m 99.6 1.2E-11 2.5E-16 112.2 33.4 387 79-490 117-565 (606)
43 KOG1915 Cell cycle control pro 99.6 4.2E-10 9.2E-15 101.8 42.9 386 74-472 104-550 (677)
44 KOG0495 HAT repeat protein [RN 99.6 6.7E-10 1.4E-14 104.4 42.4 363 79-456 518-880 (913)
45 COG3071 HemY Uncharacterized e 99.6 1.4E-10 3.1E-15 102.9 35.0 285 160-454 97-388 (400)
46 COG2956 Predicted N-acetylgluc 99.6 5.2E-11 1.1E-15 102.5 30.6 289 195-490 48-346 (389)
47 COG3071 HemY Uncharacterized e 99.6 7.9E-11 1.7E-15 104.5 32.7 287 125-421 97-390 (400)
48 COG2956 Predicted N-acetylgluc 99.5 7.5E-11 1.6E-15 101.5 30.6 277 80-367 39-325 (389)
49 KOG1155 Anaphase-promoting com 99.5 6.7E-10 1.5E-14 100.3 37.2 361 76-454 163-534 (559)
50 KOG1126 DNA-binding cell divis 99.5 9.4E-12 2E-16 117.2 26.0 281 127-421 334-620 (638)
51 KOG1126 DNA-binding cell divis 99.5 6.7E-12 1.4E-16 118.2 24.4 282 197-491 334-620 (638)
52 KOG4318 Bicoid mRNA stability 99.5 2E-11 4.3E-16 118.2 25.9 243 71-334 19-283 (1088)
53 KOG1173 Anaphase-promoting com 99.5 9.2E-10 2E-14 102.0 32.8 289 178-474 240-534 (611)
54 KOG3785 Uncharacterized conser 99.4 1E-09 2.2E-14 95.8 30.2 389 86-501 66-498 (557)
55 KOG4318 Bicoid mRNA stability 99.4 1.5E-10 3.3E-15 112.2 27.6 91 98-200 11-101 (1088)
56 PRK12370 invasion protein regu 99.4 2.4E-10 5.2E-15 114.0 28.2 268 109-387 253-536 (553)
57 TIGR02521 type_IV_pilW type IV 99.4 2.8E-10 6.2E-15 101.0 26.0 199 76-278 30-229 (234)
58 KOG1156 N-terminal acetyltrans 99.4 1.8E-08 3.9E-13 95.1 38.1 389 87-493 51-470 (700)
59 TIGR02521 type_IV_pilW type IV 99.4 4.5E-10 9.8E-15 99.7 26.6 199 112-314 31-230 (234)
60 KOG0547 Translocase of outer m 99.4 1E-08 2.2E-13 93.5 34.6 360 115-497 118-536 (606)
61 PF13041 PPR_2: PPR repeat fam 99.4 8.6E-13 1.9E-17 84.4 6.2 50 75-124 1-50 (50)
62 KOG1173 Anaphase-promoting com 99.4 1.2E-08 2.5E-13 94.9 35.2 275 225-507 252-532 (611)
63 PRK12370 invasion protein regu 99.4 1.2E-09 2.7E-14 109.0 30.4 252 161-422 275-536 (553)
64 KOG2047 mRNA splicing factor [ 99.4 1E-07 2.2E-12 90.0 40.1 407 78-497 103-584 (835)
65 KOG1129 TPR repeat-containing 99.4 2.5E-10 5.5E-15 98.4 20.7 238 251-497 222-462 (478)
66 KOG3785 Uncharacterized conser 99.3 9.5E-08 2.1E-12 83.8 35.0 370 72-465 86-497 (557)
67 KOG2047 mRNA splicing factor [ 99.3 5.1E-07 1.1E-11 85.4 42.1 411 78-502 139-660 (835)
68 PF13041 PPR_2: PPR repeat fam 99.3 5.4E-12 1.2E-16 80.7 6.8 49 425-473 1-49 (50)
69 KOG1129 TPR repeat-containing 99.3 3.4E-10 7.5E-15 97.6 19.3 229 116-350 227-457 (478)
70 KOG2376 Signal recognition par 99.3 1.8E-07 4E-12 87.5 36.7 120 82-212 17-140 (652)
71 PF12569 NARP1: NMDA receptor- 99.3 2.6E-08 5.6E-13 96.3 31.7 290 154-453 11-331 (517)
72 KOG1840 Kinesin light chain [C 99.3 5.1E-09 1.1E-13 99.9 26.4 131 218-348 200-351 (508)
73 KOG1840 Kinesin light chain [C 99.3 1.3E-08 2.8E-13 97.2 27.8 245 182-454 199-477 (508)
74 PF12569 NARP1: NMDA receptor- 99.2 6.4E-08 1.4E-12 93.6 32.9 296 114-419 6-332 (517)
75 KOG1156 N-terminal acetyltrans 99.2 3.5E-07 7.6E-12 86.7 36.4 399 79-491 10-434 (700)
76 KOG1174 Anaphase-promoting com 99.2 1.1E-06 2.4E-11 78.9 36.7 307 180-497 192-504 (564)
77 PRK11189 lipoprotein NlpI; Pro 99.2 9E-08 2E-12 87.6 29.2 219 90-317 39-266 (296)
78 KOG4340 Uncharacterized conser 99.2 1.1E-07 2.4E-12 81.5 26.5 327 80-419 13-373 (459)
79 KOG4162 Predicted calmodulin-b 99.2 1.3E-06 2.8E-11 84.6 36.7 380 106-490 317-782 (799)
80 KOG0548 Molecular co-chaperone 99.1 1.2E-06 2.6E-11 81.4 34.3 220 223-457 230-456 (539)
81 KOG1174 Anaphase-promoting com 99.1 6.7E-07 1.5E-11 80.2 31.0 269 144-420 229-499 (564)
82 COG3063 PilF Tfp pilus assembl 99.1 1.8E-07 4E-12 77.4 24.7 191 80-274 38-229 (250)
83 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-07 2.9E-12 86.4 26.6 218 126-352 40-266 (296)
84 COG3063 PilF Tfp pilus assembl 99.1 2.1E-07 4.6E-12 77.0 24.1 208 114-327 37-245 (250)
85 cd05804 StaR_like StaR_like; a 99.1 2.8E-06 6.2E-11 80.7 35.3 57 398-454 270-334 (355)
86 cd05804 StaR_like StaR_like; a 99.1 2.9E-06 6.4E-11 80.6 34.5 59 362-420 269-335 (355)
87 KOG4162 Predicted calmodulin-b 99.0 2.4E-05 5.1E-10 76.2 40.9 417 89-512 239-769 (799)
88 PRK04841 transcriptional regul 99.0 4.8E-06 1E-10 89.7 38.2 335 157-491 384-760 (903)
89 PRK04841 transcriptional regul 99.0 3.4E-06 7.3E-11 90.8 36.4 337 121-457 383-761 (903)
90 KOG4340 Uncharacterized conser 99.0 1.1E-06 2.3E-11 75.5 24.3 290 114-418 12-336 (459)
91 KOG1914 mRNA cleavage and poly 99.0 3.5E-05 7.6E-10 72.0 36.3 410 75-490 18-500 (656)
92 PF04733 Coatomer_E: Coatomer 98.9 1.4E-07 3E-12 85.1 18.8 247 192-454 11-263 (290)
93 KOG0548 Molecular co-chaperone 98.9 7.3E-06 1.6E-10 76.4 29.9 393 84-498 9-460 (539)
94 KOG2376 Signal recognition par 98.9 6.3E-05 1.4E-09 71.1 35.5 372 117-513 17-470 (652)
95 KOG1125 TPR repeat-containing 98.9 5E-07 1.1E-11 84.6 21.1 221 84-314 292-525 (579)
96 PF04733 Coatomer_E: Coatomer 98.9 3.9E-07 8.4E-12 82.2 19.2 249 226-490 10-264 (290)
97 KOG3617 WD40 and TPR repeat-co 98.9 8.6E-06 1.9E-10 79.5 28.9 258 76-383 725-993 (1416)
98 KOG3616 Selective LIM binding 98.8 4.6E-06 1E-10 80.3 26.3 167 260-451 740-906 (1636)
99 KOG3616 Selective LIM binding 98.8 3.2E-06 6.9E-11 81.4 25.0 189 194-416 744-932 (1636)
100 PLN02789 farnesyltranstransfer 98.8 7.6E-06 1.6E-10 74.9 26.5 215 79-299 39-267 (320)
101 KOG3617 WD40 and TPR repeat-co 98.8 6.3E-05 1.4E-09 73.8 32.9 361 74-489 754-1172(1416)
102 PF12854 PPR_1: PPR repeat 98.8 1.2E-08 2.6E-13 58.4 4.2 32 422-453 2-33 (34)
103 KOG0624 dsRNA-activated protei 98.8 5.2E-05 1.1E-09 66.8 28.0 294 82-386 43-370 (504)
104 PF12854 PPR_1: PPR repeat 98.8 9.3E-09 2E-13 58.9 3.5 32 72-103 2-33 (34)
105 KOG0624 dsRNA-activated protei 98.8 0.00011 2.5E-09 64.7 31.1 97 145-247 36-136 (504)
106 KOG1070 rRNA processing protei 98.8 1.3E-05 2.8E-10 82.7 27.9 205 217-425 1458-1667(1710)
107 KOG1128 Uncharacterized conser 98.7 8.7E-06 1.9E-10 78.6 23.3 220 249-490 395-615 (777)
108 KOG0985 Vesicle coat protein c 98.7 0.00012 2.5E-09 73.6 31.4 138 252-413 1104-1241(1666)
109 KOG1125 TPR repeat-containing 98.7 4.9E-06 1.1E-10 78.2 21.1 95 286-382 429-523 (579)
110 KOG1070 rRNA processing protei 98.7 1.7E-05 3.7E-10 81.9 26.3 206 111-320 1457-1667(1710)
111 PLN02789 farnesyltranstransfer 98.7 4.3E-05 9.3E-10 70.0 26.9 221 90-334 33-267 (320)
112 PRK10370 formate-dependent nit 98.7 5E-06 1.1E-10 70.8 19.6 118 370-490 52-172 (198)
113 KOG0985 Vesicle coat protein c 98.7 0.00024 5.1E-09 71.4 32.9 141 217-381 1104-1244(1666)
114 KOG1127 TPR repeat-containing 98.6 8.9E-05 1.9E-09 74.3 28.6 184 92-279 473-657 (1238)
115 KOG1127 TPR repeat-containing 98.6 0.00014 3.1E-09 72.9 29.9 395 78-482 493-943 (1238)
116 KOG1914 mRNA cleavage and poly 98.6 0.00055 1.2E-08 64.3 38.2 389 109-505 17-480 (656)
117 COG5010 TadD Flp pilus assembl 98.6 2E-05 4.3E-10 67.0 19.8 164 111-279 66-229 (257)
118 TIGR03302 OM_YfiO outer membra 98.6 1.5E-05 3.3E-10 70.6 20.2 187 74-281 30-232 (235)
119 TIGR03302 OM_YfiO outer membra 98.6 1.7E-05 3.8E-10 70.3 20.4 186 111-316 32-232 (235)
120 KOG3081 Vesicle coat complex C 98.6 8.9E-05 1.9E-09 63.2 22.7 250 84-350 15-270 (299)
121 PRK14720 transcript cleavage f 98.5 6.3E-05 1.4E-09 77.0 25.7 238 75-368 29-268 (906)
122 KOG1128 Uncharacterized conser 98.5 3.7E-05 8E-10 74.5 22.5 217 183-420 399-615 (777)
123 PRK14720 transcript cleavage f 98.5 0.00017 3.6E-09 74.0 27.9 150 289-473 118-268 (906)
124 PRK15179 Vi polysaccharide bio 98.5 7.1E-05 1.5E-09 75.8 25.2 182 109-300 83-268 (694)
125 KOG3081 Vesicle coat complex C 98.5 0.0002 4.4E-09 61.1 23.3 250 119-385 15-270 (299)
126 COG5010 TadD Flp pilus assembl 98.5 1.4E-05 3.1E-10 67.8 16.6 160 82-245 71-230 (257)
127 PRK10370 formate-dependent nit 98.5 1.2E-05 2.6E-10 68.5 16.3 120 125-247 52-174 (198)
128 PRK15179 Vi polysaccharide bio 98.5 0.00013 2.9E-09 73.9 25.8 219 251-492 27-246 (694)
129 PRK15359 type III secretion sy 98.5 8.8E-06 1.9E-10 65.4 14.3 113 377-497 13-125 (144)
130 PRK15359 type III secretion sy 98.4 1.4E-05 3E-10 64.3 14.8 93 82-176 29-121 (144)
131 TIGR02552 LcrH_SycD type III s 98.3 2.5E-05 5.4E-10 62.4 14.5 104 394-501 19-122 (135)
132 TIGR00756 PPR pentatricopeptid 98.3 1E-06 2.2E-11 51.4 4.7 34 78-111 1-34 (35)
133 TIGR02552 LcrH_SycD type III s 98.3 4.9E-05 1.1E-09 60.7 14.8 97 113-211 18-114 (135)
134 COG4783 Putative Zn-dependent 98.3 0.00062 1.4E-08 63.3 22.5 110 124-237 318-428 (484)
135 KOG3060 Uncharacterized conser 98.2 0.0015 3.3E-08 55.5 22.6 190 264-457 24-221 (289)
136 COG4783 Putative Zn-dependent 98.2 0.0013 2.7E-08 61.4 24.2 138 332-491 316-454 (484)
137 KOG3060 Uncharacterized conser 98.2 0.0017 3.6E-08 55.2 22.5 188 90-281 25-220 (289)
138 PF13812 PPR_3: Pentatricopept 98.2 3.3E-06 7.2E-11 48.7 4.5 33 78-110 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 9.4E-05 2E-09 69.2 15.5 123 81-209 173-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.1 5.3E-06 1.1E-10 48.2 4.5 33 429-461 2-34 (35)
141 PF01535 PPR: PPR repeat; Int 98.1 5.6E-06 1.2E-10 46.5 3.6 31 78-108 1-31 (31)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4.2E-09 67.1 15.7 120 188-314 175-295 (395)
143 PF13812 PPR_3: Pentatricopept 98.1 9.3E-06 2E-10 46.8 4.5 32 429-460 3-34 (34)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00039 8.4E-09 56.2 15.6 53 433-487 91-143 (145)
145 PF09976 TPR_21: Tetratricopep 98.0 0.00039 8.5E-09 56.1 15.0 125 79-207 14-143 (145)
146 KOG2053 Mitochondrial inherita 98.0 0.022 4.8E-07 57.3 43.4 223 88-317 20-256 (932)
147 PF10037 MRP-S27: Mitochondria 97.9 0.00026 5.6E-09 66.6 13.4 124 107-230 61-186 (429)
148 cd00189 TPR Tetratricopeptide 97.9 0.00026 5.6E-09 52.1 11.4 94 80-175 3-96 (100)
149 KOG2041 WD40 repeat protein [G 97.9 0.024 5.3E-07 55.3 26.2 352 109-497 689-1092(1189)
150 PF10037 MRP-S27: Mitochondria 97.9 0.00033 7.2E-09 65.9 13.8 117 183-299 67-185 (429)
151 PF08579 RPM2: Mitochondrial r 97.9 0.00022 4.8E-09 52.3 9.5 78 82-159 30-116 (120)
152 cd00189 TPR Tetratricopeptide 97.8 0.00034 7.3E-09 51.5 10.7 93 396-490 4-96 (100)
153 PF08579 RPM2: Mitochondrial r 97.8 0.00028 6.2E-09 51.8 9.3 76 434-509 32-116 (120)
154 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.6E-10 43.7 3.2 29 289-317 2-30 (31)
155 PLN03088 SGT1, suppressor of 97.7 0.00092 2E-08 62.9 14.4 92 364-457 9-100 (356)
156 PRK10866 outer membrane biogen 97.7 0.027 5.9E-07 49.7 22.7 58 83-142 38-99 (243)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.3E-08 50.6 13.5 96 80-177 5-106 (119)
158 KOG2053 Mitochondrial inherita 97.7 0.068 1.5E-06 54.0 41.7 199 80-282 44-256 (932)
159 PF05843 Suf: Suppressor of fo 97.7 0.00072 1.6E-08 61.2 12.6 131 78-211 2-136 (280)
160 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 53.0 5.7 81 90-172 2-83 (84)
161 PF12895 Apc3: Anaphase-promot 97.7 8.6E-05 1.9E-09 53.5 5.2 81 405-487 2-83 (84)
162 PLN03088 SGT1, suppressor of 97.7 0.0016 3.4E-08 61.3 14.8 92 84-177 9-100 (356)
163 PF05843 Suf: Suppressor of fo 97.7 0.00087 1.9E-08 60.7 12.6 145 323-472 2-150 (280)
164 PRK15363 pathogenicity island 97.7 0.0013 2.8E-08 52.3 11.9 93 82-176 40-132 (157)
165 PRK02603 photosystem I assembl 97.7 0.0024 5.3E-08 53.3 14.4 131 76-232 34-166 (172)
166 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0021 4.5E-08 49.8 13.2 94 395-490 5-104 (119)
167 KOG2280 Vacuolar assembly/sort 97.6 0.079 1.7E-06 52.5 25.9 339 105-484 425-792 (829)
168 PF14938 SNAP: Soluble NSF att 97.6 0.036 7.7E-07 50.5 22.9 24 292-315 160-183 (282)
169 PRK15363 pathogenicity island 97.6 0.0038 8.2E-08 49.7 14.1 92 398-491 41-132 (157)
170 KOG2041 WD40 repeat protein [G 97.6 0.075 1.6E-06 52.1 26.8 120 73-207 688-821 (1189)
171 KOG0553 TPR repeat-containing 97.6 0.00083 1.8E-08 58.6 11.1 101 366-470 90-190 (304)
172 PF14938 SNAP: Soluble NSF att 97.6 0.022 4.8E-07 51.8 20.8 137 78-245 36-183 (282)
173 PRK02603 photosystem I assembl 97.6 0.0047 1E-07 51.5 15.2 83 359-442 37-121 (172)
174 KOG0553 TPR repeat-containing 97.6 0.0013 2.8E-08 57.5 11.5 86 88-175 92-177 (304)
175 PF06239 ECSIT: Evolutionarily 97.6 0.002 4.4E-08 53.8 12.2 104 109-231 44-152 (228)
176 CHL00033 ycf3 photosystem I as 97.6 0.0021 4.5E-08 53.5 12.7 92 113-205 36-136 (168)
177 PF06239 ECSIT: Evolutionarily 97.5 0.0028 6.1E-08 52.9 12.6 86 391-476 46-152 (228)
178 CHL00033 ycf3 photosystem I as 97.5 0.004 8.7E-08 51.8 13.8 96 76-172 34-138 (168)
179 PRK10866 outer membrane biogen 97.5 0.068 1.5E-06 47.2 23.3 73 118-191 38-113 (243)
180 KOG1130 Predicted G-alpha GTPa 97.4 0.0024 5.2E-08 58.1 11.8 265 85-350 25-343 (639)
181 PF13432 TPR_16: Tetratricopep 97.4 0.00056 1.2E-08 46.3 6.1 55 435-490 5-59 (65)
182 PF12688 TPR_5: Tetratrico pep 97.4 0.017 3.7E-07 44.3 14.6 104 83-192 7-116 (120)
183 PRK10153 DNA-binding transcrip 97.4 0.0095 2.1E-07 58.7 16.7 61 428-490 421-481 (517)
184 PF14559 TPR_19: Tetratricopep 97.4 0.00073 1.6E-08 46.2 6.5 61 88-151 2-62 (68)
185 PF14559 TPR_19: Tetratricopep 97.4 0.0006 1.3E-08 46.7 6.0 51 404-455 3-53 (68)
186 PRK10153 DNA-binding transcrip 97.4 0.013 2.8E-07 57.9 17.2 143 318-465 333-489 (517)
187 PF13414 TPR_11: TPR repeat; P 97.3 0.00076 1.6E-08 46.3 6.2 63 427-490 3-66 (69)
188 COG4700 Uncharacterized protei 97.3 0.066 1.4E-06 43.6 17.9 131 319-453 86-219 (251)
189 PF13525 YfiO: Outer membrane 97.3 0.075 1.6E-06 45.6 19.1 59 83-141 11-71 (203)
190 COG4235 Cytochrome c biogenesi 97.3 0.023 5E-07 50.2 15.5 99 390-490 154-255 (287)
191 KOG0550 Molecular chaperone (D 97.3 0.16 3.4E-06 46.9 23.1 279 80-386 52-350 (486)
192 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.18 3.9E-06 47.0 30.8 417 75-505 40-543 (660)
193 COG4700 Uncharacterized protei 97.2 0.084 1.8E-06 43.0 18.6 101 110-210 87-188 (251)
194 PF12688 TPR_5: Tetratrico pep 97.2 0.033 7.2E-07 42.7 14.0 93 118-210 7-103 (120)
195 PF13432 TPR_16: Tetratricopep 97.2 0.0022 4.9E-08 43.3 6.9 58 83-141 3-60 (65)
196 PF13414 TPR_11: TPR repeat; P 97.1 0.0021 4.7E-08 44.0 6.7 63 77-140 3-66 (69)
197 KOG1130 Predicted G-alpha GTPa 97.1 0.007 1.5E-07 55.2 10.8 131 324-454 197-342 (639)
198 PF13525 YfiO: Outer membrane 97.0 0.12 2.5E-06 44.5 18.0 22 224-245 49-70 (203)
199 KOG0550 Molecular chaperone (D 97.0 0.1 2.2E-06 48.1 17.5 65 285-352 166-233 (486)
200 PF03704 BTAD: Bacterial trans 97.0 0.0064 1.4E-07 49.1 9.5 73 430-503 65-142 (146)
201 COG4235 Cytochrome c biogenesi 97.0 0.065 1.4E-06 47.4 16.0 101 144-246 153-256 (287)
202 KOG2796 Uncharacterized conser 97.0 0.19 4.2E-06 43.4 19.0 132 325-457 180-316 (366)
203 PF13371 TPR_9: Tetratricopept 97.0 0.0043 9.3E-08 43.1 7.2 54 436-490 4-57 (73)
204 PRK10803 tol-pal system protei 96.9 0.02 4.3E-07 51.0 12.5 96 79-176 145-246 (263)
205 PRK10803 tol-pal system protei 96.9 0.027 5.9E-07 50.2 12.7 100 395-498 146-251 (263)
206 KOG2280 Vacuolar assembly/sort 96.9 0.6 1.3E-05 46.6 24.3 332 80-451 440-794 (829)
207 KOG1585 Protein required for f 96.8 0.26 5.6E-06 42.2 17.0 205 78-309 32-249 (308)
208 PF13281 DUF4071: Domain of un 96.8 0.47 1E-05 44.2 20.3 77 292-368 146-228 (374)
209 PF04840 Vps16_C: Vps16, C-ter 96.7 0.48 1E-05 43.7 27.8 107 325-451 180-286 (319)
210 PF03704 BTAD: Bacterial trans 96.7 0.013 2.7E-07 47.4 8.6 68 116-184 66-138 (146)
211 PF13371 TPR_9: Tetratricopept 96.7 0.016 3.6E-07 40.1 8.1 57 85-142 3-59 (73)
212 PF07079 DUF1347: Protein of u 96.6 0.6 1.3E-05 43.9 39.9 409 78-503 47-531 (549)
213 KOG1538 Uncharacterized conser 96.6 0.29 6.4E-06 47.8 18.2 252 217-491 556-846 (1081)
214 KOG2796 Uncharacterized conser 96.6 0.41 8.9E-06 41.5 22.1 146 358-506 178-328 (366)
215 PRK15331 chaperone protein Sic 96.6 0.067 1.5E-06 43.0 11.6 85 369-455 49-133 (165)
216 KOG1538 Uncharacterized conser 96.5 0.43 9.2E-06 46.8 18.3 63 201-275 619-681 (1081)
217 PRK15331 chaperone protein Sic 96.4 0.15 3.2E-06 41.1 12.4 91 84-176 44-134 (165)
218 PF13424 TPR_12: Tetratricopep 96.3 0.0077 1.7E-07 42.4 4.8 62 428-489 6-73 (78)
219 COG3898 Uncharacterized membra 96.3 0.84 1.8E-05 42.0 31.9 290 150-456 85-392 (531)
220 KOG2114 Vacuolar assembly/sort 96.3 1.4 3.1E-05 44.7 26.2 179 78-279 335-517 (933)
221 PF04840 Vps16_C: Vps16, C-ter 96.2 0.98 2.1E-05 41.6 31.4 111 289-419 179-289 (319)
222 PF12921 ATP13: Mitochondrial 96.2 0.16 3.4E-06 39.4 11.6 54 422-475 47-101 (126)
223 PF13424 TPR_12: Tetratricopep 96.2 0.021 4.5E-07 40.2 6.2 63 393-455 6-74 (78)
224 PF04053 Coatomer_WDAD: Coatom 96.0 0.16 3.4E-06 49.1 13.2 132 218-382 296-427 (443)
225 KOG3941 Intermediate in Toll s 96.0 0.056 1.2E-06 47.0 9.0 119 71-208 61-185 (406)
226 PF09205 DUF1955: Domain of un 96.0 0.5 1.1E-05 36.3 14.5 63 220-283 89-151 (161)
227 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.088 1.9E-06 49.7 10.7 98 390-493 73-176 (453)
228 PF13281 DUF4071: Domain of un 95.9 1.5 3.2E-05 41.1 21.6 27 429-455 307-333 (374)
229 PF12921 ATP13: Mitochondrial 95.9 0.15 3.3E-06 39.5 10.2 55 455-509 45-100 (126)
230 PF07079 DUF1347: Protein of u 95.9 1.6 3.5E-05 41.2 36.8 374 80-467 80-530 (549)
231 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.28 6.1E-06 46.5 13.6 64 76-141 74-141 (453)
232 COG3118 Thioredoxin domain-con 95.9 0.92 2E-05 40.3 15.8 142 122-266 144-286 (304)
233 smart00299 CLH Clathrin heavy 95.8 0.73 1.6E-05 36.7 15.9 126 80-228 10-136 (140)
234 KOG1920 IkappaB kinase complex 95.8 3.1 6.6E-05 44.3 21.4 108 255-382 942-1051(1265)
235 KOG0543 FKBP-type peptidyl-pro 95.8 0.21 4.5E-06 46.2 12.1 90 85-175 216-319 (397)
236 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.8 3.9E-05 40.7 31.2 129 323-455 398-530 (660)
237 smart00299 CLH Clathrin heavy 95.7 0.85 1.8E-05 36.3 15.0 42 117-159 12-53 (140)
238 PF10300 DUF3808: Protein of u 95.6 1 2.3E-05 44.2 17.4 162 326-490 192-375 (468)
239 COG3898 Uncharacterized membra 95.6 1.8 3.9E-05 40.0 31.2 299 184-497 84-398 (531)
240 KOG3941 Intermediate in Toll s 95.5 0.13 2.9E-06 44.8 9.4 72 406-477 86-173 (406)
241 PF04053 Coatomer_WDAD: Coatom 95.5 0.29 6.3E-06 47.3 12.7 159 85-278 269-428 (443)
242 COG3629 DnrI DNA-binding trans 95.4 0.22 4.9E-06 44.2 10.6 76 430-506 156-236 (280)
243 KOG4555 TPR repeat-containing 95.3 0.83 1.8E-05 35.0 11.7 92 86-178 52-146 (175)
244 PF13170 DUF4003: Protein of u 95.3 2.3 5E-05 38.8 17.1 130 93-224 78-224 (297)
245 PF09205 DUF1955: Domain of un 95.2 1 2.2E-05 34.6 14.4 64 395-459 89-152 (161)
246 KOG2610 Uncharacterized conser 95.1 0.72 1.6E-05 41.5 12.6 155 298-454 114-274 (491)
247 KOG2610 Uncharacterized conser 95.0 0.96 2.1E-05 40.7 13.1 154 263-419 114-274 (491)
248 KOG0543 FKBP-type peptidyl-pro 94.9 0.59 1.3E-05 43.3 12.1 140 328-490 214-354 (397)
249 PRK11906 transcriptional regul 94.6 4.4 9.5E-05 38.8 17.2 111 373-487 320-432 (458)
250 PF13428 TPR_14: Tetratricopep 94.6 0.15 3.2E-06 31.0 5.3 27 430-456 4-30 (44)
251 KOG1585 Protein required for f 94.6 2.8 6E-05 36.2 15.9 24 254-277 93-116 (308)
252 KOG4555 TPR repeat-containing 94.5 0.99 2.2E-05 34.6 10.3 91 121-212 52-145 (175)
253 COG3118 Thioredoxin domain-con 94.5 3.4 7.4E-05 36.9 17.2 143 333-479 145-289 (304)
254 PRK11906 transcriptional regul 94.4 4.6 0.0001 38.7 16.9 81 129-211 321-401 (458)
255 PF08631 SPO22: Meiosis protei 94.3 3.9 8.5E-05 37.1 26.0 122 88-211 4-150 (278)
256 KOG1941 Acetylcholine receptor 94.3 3.5 7.5E-05 37.8 15.1 23 431-453 250-272 (518)
257 PF13428 TPR_14: Tetratricopep 94.3 0.19 4.2E-06 30.5 5.4 28 79-106 3-30 (44)
258 KOG1258 mRNA processing protei 94.2 6.1 0.00013 38.9 34.1 388 76-476 44-489 (577)
259 COG4105 ComL DNA uptake lipopr 94.2 3.5 7.6E-05 36.0 20.2 82 75-158 33-117 (254)
260 COG1729 Uncharacterized protei 94.2 1.1 2.5E-05 39.3 11.7 100 394-498 144-249 (262)
261 COG4105 ComL DNA uptake lipopr 94.2 3.6 7.7E-05 36.0 20.2 52 194-245 46-99 (254)
262 PF07035 Mic1: Colon cancer-as 94.1 2.7 5.8E-05 34.3 15.5 133 97-245 14-148 (167)
263 KOG1920 IkappaB kinase complex 94.1 9.9 0.00022 40.7 22.4 85 359-455 941-1027(1265)
264 PF13512 TPR_18: Tetratricopep 94.0 2.3 5E-05 33.5 11.9 72 87-158 20-93 (142)
265 PF13170 DUF4003: Protein of u 93.9 2.7 5.9E-05 38.3 14.2 127 200-328 80-223 (297)
266 KOG1258 mRNA processing protei 93.9 7.2 0.00016 38.4 37.1 382 110-505 43-483 (577)
267 PF04184 ST7: ST7 protein; In 93.8 6.7 0.00015 37.8 17.0 60 361-420 263-323 (539)
268 COG1729 Uncharacterized protei 93.6 1.3 2.8E-05 38.9 11.1 95 254-351 144-244 (262)
269 PF13512 TPR_18: Tetratricopep 93.6 2.9 6.2E-05 33.0 11.9 80 117-196 15-96 (142)
270 KOG1941 Acetylcholine receptor 93.6 2.4 5.1E-05 38.8 12.7 128 362-489 127-273 (518)
271 PF10602 RPN7: 26S proteasome 93.6 1.2 2.7E-05 37.1 10.6 63 78-140 37-101 (177)
272 COG0457 NrfG FOG: TPR repeat [ 93.5 4.5 9.9E-05 34.9 29.5 200 253-455 60-264 (291)
273 COG3629 DnrI DNA-binding trans 93.5 1.2 2.6E-05 39.8 10.7 77 394-471 155-236 (280)
274 PF04184 ST7: ST7 protein; In 93.3 4 8.7E-05 39.3 14.3 184 297-498 178-363 (539)
275 COG0457 NrfG FOG: TPR repeat [ 93.2 5.1 0.00011 34.6 29.1 223 265-490 36-264 (291)
276 KOG1550 Extracellular protein 93.2 11 0.00023 38.3 23.0 14 373-386 525-538 (552)
277 PF08631 SPO22: Meiosis protei 93.2 6.5 0.00014 35.7 25.5 62 219-281 86-150 (278)
278 PF13176 TPR_7: Tetratricopept 93.0 0.26 5.6E-06 28.3 4.1 24 80-103 2-25 (36)
279 PF10602 RPN7: 26S proteasome 92.8 1.7 3.8E-05 36.1 10.3 63 183-245 37-101 (177)
280 PF09613 HrpB1_HrpK: Bacterial 92.5 4.9 0.00011 32.5 12.7 18 403-420 55-72 (160)
281 PF10300 DUF3808: Protein of u 92.4 12 0.00026 36.9 23.7 16 493-508 449-464 (468)
282 COG4649 Uncharacterized protei 92.4 5.2 0.00011 32.6 14.0 123 158-280 69-195 (221)
283 COG4649 Uncharacterized protei 92.1 5.6 0.00012 32.4 13.9 128 333-460 69-200 (221)
284 PF13176 TPR_7: Tetratricopept 91.9 0.46 9.9E-06 27.3 4.2 24 430-453 2-25 (36)
285 PF07035 Mic1: Colon cancer-as 91.2 7.3 0.00016 31.9 14.8 20 293-312 95-114 (167)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 91.0 1.7 3.6E-05 31.3 6.9 43 447-489 27-69 (103)
287 PF02284 COX5A: Cytochrome c o 90.4 4 8.8E-05 29.8 8.5 61 446-507 29-89 (108)
288 PF00515 TPR_1: Tetratricopept 90.2 0.5 1.1E-05 26.5 3.3 27 429-455 3-29 (34)
289 PF04097 Nic96: Nup93/Nic96; 90.0 25 0.00054 36.1 19.8 221 77-316 112-356 (613)
290 PF00637 Clathrin: Region in C 90.0 0.013 2.8E-07 47.1 -4.9 53 364-416 14-66 (143)
291 KOG0276 Vesicle coat complex C 89.9 4.5 9.8E-05 39.8 10.9 99 263-382 648-746 (794)
292 KOG4570 Uncharacterized conser 89.9 5.2 0.00011 36.0 10.4 47 268-314 116-162 (418)
293 PF00515 TPR_1: Tetratricopept 89.5 1.1 2.3E-05 25.1 4.3 27 464-490 3-29 (34)
294 PF13431 TPR_17: Tetratricopep 89.5 0.49 1.1E-05 26.8 2.8 23 110-132 11-33 (34)
295 PF07575 Nucleopor_Nup85: Nup8 89.5 22 0.00048 36.2 16.4 25 77-102 149-173 (566)
296 PF13431 TPR_17: Tetratricopep 89.2 0.39 8.5E-06 27.2 2.2 22 426-447 12-33 (34)
297 KOG2114 Vacuolar assembly/sort 89.1 30 0.00066 35.8 21.3 143 83-243 374-516 (933)
298 PF07719 TPR_2: Tetratricopept 89.1 0.68 1.5E-05 25.8 3.3 27 429-455 3-29 (34)
299 PF13929 mRNA_stabil: mRNA sta 89.0 11 0.00024 33.7 12.0 138 125-262 141-288 (292)
300 PF09613 HrpB1_HrpK: Bacterial 88.9 11 0.00024 30.5 12.9 69 88-160 21-90 (160)
301 PF02259 FAT: FAT domain; Int 88.3 23 0.00049 33.4 20.9 65 356-420 145-212 (352)
302 TIGR02561 HrpB1_HrpK type III 87.8 12 0.00027 29.7 12.2 18 403-420 55-72 (153)
303 COG4785 NlpI Lipoprotein NlpI, 87.6 17 0.00036 31.1 16.0 27 464-490 239-265 (297)
304 KOG0276 Vesicle coat complex C 87.5 11 0.00024 37.2 11.8 166 74-279 578-748 (794)
305 KOG4570 Uncharacterized conser 87.5 12 0.00026 33.8 11.1 47 407-453 115-161 (418)
306 PF07719 TPR_2: Tetratricopept 87.4 1.8 3.8E-05 24.1 4.3 27 464-490 3-29 (34)
307 PF13374 TPR_10: Tetratricopep 87.4 1.8 3.8E-05 25.5 4.6 27 428-454 3-29 (42)
308 COG2976 Uncharacterized protei 87.2 13 0.00027 31.2 10.4 129 77-212 54-189 (207)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 87.0 6.3 0.00014 28.5 7.5 47 304-350 24-70 (103)
310 COG3947 Response regulator con 87.0 22 0.00048 31.8 17.0 58 221-279 283-340 (361)
311 KOG2066 Vacuolar assembly/sort 86.4 43 0.00092 34.5 28.6 104 82-194 361-467 (846)
312 PF13374 TPR_10: Tetratricopep 86.3 1.7 3.7E-05 25.5 4.1 28 78-105 3-30 (42)
313 KOG4234 TPR repeat-containing 86.1 12 0.00027 31.3 9.8 91 120-211 103-197 (271)
314 KOG4648 Uncharacterized conser 85.2 6.2 0.00013 35.9 8.3 90 84-175 104-193 (536)
315 COG4455 ImpE Protein of avirul 85.2 8.1 0.00018 32.9 8.5 76 80-156 4-81 (273)
316 PF02284 COX5A: Cytochrome c o 84.8 8 0.00017 28.4 7.2 47 305-351 28-74 (108)
317 KOG1464 COP9 signalosome, subu 84.7 28 0.0006 30.8 21.3 50 195-244 40-92 (440)
318 PF11207 DUF2989: Protein of u 84.7 11 0.00023 31.9 9.0 74 128-202 122-198 (203)
319 PF11207 DUF2989: Protein of u 84.1 13 0.00028 31.4 9.3 41 300-340 153-196 (203)
320 PF10345 Cohesin_load: Cohesin 83.6 58 0.0012 33.6 37.4 416 73-490 55-605 (608)
321 TIGR03504 FimV_Cterm FimV C-te 83.6 1.5 3.2E-05 26.6 2.7 23 433-455 5-27 (44)
322 KOG1550 Extracellular protein 83.2 56 0.0012 33.2 28.3 180 163-352 228-427 (552)
323 KOG2471 TPR repeat-containing 82.8 26 0.00057 33.8 11.6 107 366-474 249-381 (696)
324 COG4455 ImpE Protein of avirul 82.4 8.6 0.00019 32.7 7.5 77 394-471 3-81 (273)
325 COG2976 Uncharacterized protei 82.1 29 0.00063 29.1 15.3 89 399-492 96-189 (207)
326 KOG4234 TPR repeat-containing 81.7 20 0.00044 30.1 9.3 88 297-386 105-197 (271)
327 PF13181 TPR_8: Tetratricopept 81.7 1.8 3.8E-05 24.1 2.6 27 429-455 3-29 (34)
328 PRK09687 putative lyase; Provi 81.7 41 0.00088 30.6 30.2 17 321-337 205-221 (280)
329 PRK15180 Vi polysaccharide bio 80.2 7.4 0.00016 37.2 7.2 124 330-456 297-420 (831)
330 TIGR03504 FimV_Cterm FimV C-te 80.1 5.5 0.00012 24.1 4.3 23 398-420 5-27 (44)
331 PF13181 TPR_8: Tetratricopept 80.1 6.1 0.00013 21.8 4.5 27 464-490 3-29 (34)
332 PRK09687 putative lyase; Provi 79.9 47 0.001 30.2 27.8 75 79-159 39-117 (280)
333 COG4785 NlpI Lipoprotein NlpI, 79.7 38 0.00083 29.0 17.3 64 147-211 99-162 (297)
334 PF00637 Clathrin: Region in C 79.6 1.5 3.2E-05 35.1 2.4 45 122-166 17-61 (143)
335 PF04097 Nic96: Nup93/Nic96; 79.0 83 0.0018 32.5 16.8 22 434-455 421-442 (613)
336 KOG0890 Protein kinase of the 78.7 1.5E+02 0.0033 35.3 25.2 150 82-241 1388-1542(2382)
337 COG3947 Response regulator con 78.5 51 0.0011 29.7 15.4 70 430-500 282-356 (361)
338 KOG0890 Protein kinase of the 78.5 1.5E+02 0.0033 35.2 24.6 319 117-456 1388-1731(2382)
339 KOG4077 Cytochrome c oxidase, 77.8 18 0.00038 27.8 7.1 45 410-454 67-111 (149)
340 KOG0403 Neoplastic transformat 77.8 68 0.0015 30.8 20.3 25 80-104 217-241 (645)
341 TIGR02561 HrpB1_HrpK type III 77.2 36 0.00077 27.2 12.4 52 88-141 21-73 (153)
342 PF13174 TPR_6: Tetratricopept 76.8 4.7 0.0001 22.0 3.3 24 83-106 6-29 (33)
343 PF07721 TPR_4: Tetratricopept 76.6 5.4 0.00012 20.7 3.2 18 433-450 7-24 (26)
344 COG2909 MalT ATP-dependent tra 76.2 1.1E+02 0.0024 32.3 25.3 314 168-487 332-684 (894)
345 PF07163 Pex26: Pex26 protein; 76.0 36 0.00078 30.4 9.6 86 258-345 89-181 (309)
346 PF02259 FAT: FAT domain; Int 75.1 74 0.0016 29.9 25.2 65 286-350 145-212 (352)
347 PF07163 Pex26: Pex26 protein; 74.0 46 0.00099 29.8 9.8 56 189-244 90-145 (309)
348 PRK11619 lytic murein transgly 73.8 1.2E+02 0.0025 31.6 29.8 145 78-233 35-179 (644)
349 PF06552 TOM20_plant: Plant sp 73.8 40 0.00087 27.9 8.9 65 93-160 7-82 (186)
350 KOG4648 Uncharacterized conser 73.1 17 0.00037 33.2 7.2 53 365-419 105-158 (536)
351 KOG2396 HAT (Half-A-TPR) repea 72.6 1E+02 0.0022 30.3 35.7 397 75-490 103-558 (568)
352 COG5159 RPN6 26S proteasome re 72.0 75 0.0016 28.5 11.5 128 188-315 9-153 (421)
353 PF13762 MNE1: Mitochondrial s 71.9 49 0.0011 26.4 8.8 83 78-160 40-128 (145)
354 PHA02875 ankyrin repeat protei 71.7 1E+02 0.0022 29.9 14.9 209 85-322 7-230 (413)
355 PF02607 B12-binding_2: B12 bi 71.0 18 0.00039 25.2 5.8 40 474-513 13-52 (79)
356 PF06552 TOM20_plant: Plant sp 70.5 34 0.00075 28.3 7.8 112 373-495 7-140 (186)
357 KOG4567 GTPase-activating prot 68.9 53 0.0012 29.8 9.1 41 414-454 265-305 (370)
358 PF08424 NRDE-2: NRDE-2, neces 68.9 1E+02 0.0022 28.8 17.5 98 109-208 16-128 (321)
359 PRK10941 hypothetical protein; 68.7 80 0.0017 28.5 10.6 78 430-508 184-262 (269)
360 PF11848 DUF3368: Domain of un 68.2 20 0.00044 22.1 4.8 32 473-504 13-44 (48)
361 PF14853 Fis1_TPR_C: Fis1 C-te 67.6 26 0.00055 22.3 5.3 22 434-455 8-29 (53)
362 PF11848 DUF3368: Domain of un 67.3 25 0.00055 21.7 5.1 36 85-120 10-45 (48)
363 cd00280 TRFH Telomeric Repeat 67.1 73 0.0016 26.5 10.4 21 155-175 119-139 (200)
364 KOG2063 Vacuolar assembly/sort 67.1 1.9E+02 0.004 31.1 20.7 57 80-140 310-374 (877)
365 PF07575 Nucleopor_Nup85: Nup8 66.4 44 0.00095 34.1 9.6 76 237-314 390-465 (566)
366 KOG2297 Predicted translation 65.9 1.1E+02 0.0023 27.9 20.0 19 429-447 323-341 (412)
367 PHA02875 ankyrin repeat protei 65.6 77 0.0017 30.7 11.0 77 227-311 9-89 (413)
368 PF10579 Rapsyn_N: Rapsyn N-te 65.2 16 0.00036 25.3 4.3 45 439-483 18-64 (80)
369 smart00028 TPR Tetratricopepti 64.8 15 0.00033 19.0 3.8 26 80-105 4-29 (34)
370 PF09670 Cas_Cas02710: CRISPR- 64.3 1.4E+02 0.003 28.7 12.3 57 84-141 138-198 (379)
371 PRK10564 maltose regulon perip 63.9 15 0.00033 33.1 5.0 40 75-114 254-294 (303)
372 KOG4077 Cytochrome c oxidase, 63.8 50 0.0011 25.5 6.9 47 375-421 67-113 (149)
373 PF04190 DUF410: Protein of un 63.7 1.1E+02 0.0024 27.4 17.8 22 357-378 90-111 (260)
374 COG1747 Uncharacterized N-term 63.4 1.6E+02 0.0035 29.1 25.0 165 145-316 64-234 (711)
375 cd00280 TRFH Telomeric Repeat 63.3 49 0.0011 27.5 7.3 68 407-477 84-158 (200)
376 PF10579 Rapsyn_N: Rapsyn N-te 63.0 29 0.00062 24.2 5.1 46 89-134 18-65 (80)
377 PF14689 SPOB_a: Sensor_kinase 62.8 20 0.00043 23.7 4.3 30 286-315 22-51 (62)
378 PF11663 Toxin_YhaV: Toxin wit 62.6 12 0.00025 29.2 3.5 30 475-506 108-137 (140)
379 PF14689 SPOB_a: Sensor_kinase 62.2 24 0.00052 23.3 4.6 29 111-139 22-50 (62)
380 cd08819 CARD_MDA5_2 Caspase ac 62.0 55 0.0012 23.3 7.0 14 196-209 50-63 (88)
381 PF13929 mRNA_stabil: mRNA sta 61.2 1.3E+02 0.0028 27.3 16.9 116 196-311 142-262 (292)
382 PF11663 Toxin_YhaV: Toxin wit 61.2 8.2 0.00018 29.9 2.5 30 440-471 108-137 (140)
383 KOG2063 Vacuolar assembly/sort 60.7 2.4E+02 0.0052 30.3 17.2 38 191-228 600-637 (877)
384 PF09454 Vps23_core: Vps23 cor 60.3 28 0.00061 23.3 4.6 52 74-126 5-56 (65)
385 KOG1586 Protein required for f 59.8 1.2E+02 0.0026 26.5 22.2 20 298-317 165-184 (288)
386 PRK11619 lytic murein transgly 58.7 2.3E+02 0.005 29.5 34.5 116 231-349 255-373 (644)
387 KOG4507 Uncharacterized conser 58.1 62 0.0014 32.2 8.2 55 260-315 650-704 (886)
388 COG0735 Fur Fe2+/Zn2+ uptake r 58.0 88 0.0019 25.0 8.1 31 468-498 26-56 (145)
389 PF15297 CKAP2_C: Cytoskeleton 57.9 1.2E+02 0.0026 28.2 9.6 41 430-470 143-183 (353)
390 KOG2034 Vacuolar sorting prote 57.8 2.6E+02 0.0056 29.7 30.2 45 259-312 511-555 (911)
391 PF13762 MNE1: Mitochondrial s 57.7 97 0.0021 24.8 10.2 98 103-230 28-128 (145)
392 COG0790 FOG: TPR repeat, SEL1 57.5 1.5E+02 0.0033 26.9 21.5 84 264-353 53-144 (292)
393 KOG4521 Nuclear pore complex, 56.4 3.2E+02 0.0068 30.3 13.9 128 359-489 985-1130(1480)
394 PF10475 DUF2450: Protein of u 56.3 1.6E+02 0.0035 26.9 11.3 52 258-315 104-155 (291)
395 PRK10564 maltose regulon perip 56.2 25 0.00054 31.8 5.0 29 291-319 261-289 (303)
396 PF12862 Apc5: Anaphase-promot 55.4 58 0.0013 23.6 6.2 53 88-140 9-69 (94)
397 COG1747 Uncharacterized N-term 55.0 2.2E+02 0.0049 28.1 25.3 164 216-387 65-235 (711)
398 COG0735 Fur Fe2+/Zn2+ uptake r 54.8 72 0.0016 25.5 7.1 33 187-219 25-57 (145)
399 COG5108 RPO41 Mitochondrial DN 53.9 69 0.0015 32.5 7.9 75 397-474 33-115 (1117)
400 KOG2066 Vacuolar assembly/sort 53.8 2.9E+02 0.0062 29.0 26.8 102 119-229 363-467 (846)
401 PRK15180 Vi polysaccharide bio 53.5 2.3E+02 0.0049 27.8 29.7 125 84-212 296-421 (831)
402 PF11846 DUF3366: Domain of un 53.5 45 0.00098 28.2 6.2 32 109-140 141-172 (193)
403 PF14669 Asp_Glu_race_2: Putat 52.7 1.4E+02 0.0031 25.1 14.3 178 71-277 2-206 (233)
404 PF11846 DUF3366: Domain of un 52.6 73 0.0016 26.9 7.4 32 424-455 141-172 (193)
405 KOG4507 Uncharacterized conser 51.6 1.3E+02 0.0028 30.2 9.2 151 145-298 569-721 (886)
406 TIGR02508 type_III_yscG type I 51.3 98 0.0021 22.9 7.9 50 401-456 48-97 (115)
407 KOG2908 26S proteasome regulat 50.9 2.1E+02 0.0045 26.6 9.9 22 434-455 122-143 (380)
408 PF09670 Cas_Cas02710: CRISPR- 50.8 1.5E+02 0.0033 28.3 9.8 56 330-386 139-198 (379)
409 PF12862 Apc5: Anaphase-promot 50.3 95 0.0021 22.5 7.8 21 434-454 48-68 (94)
410 KOG2471 TPR repeat-containing 49.7 2.7E+02 0.0058 27.5 16.8 111 401-513 249-385 (696)
411 KOG0403 Neoplastic transformat 49.6 2.5E+02 0.0055 27.2 24.6 61 431-492 513-573 (645)
412 PF10345 Cohesin_load: Cohesin 49.1 3.2E+02 0.007 28.2 38.9 196 74-279 27-252 (608)
413 PRK13342 recombination factor 48.3 2.7E+02 0.0058 27.1 19.9 47 290-336 230-279 (413)
414 cd08819 CARD_MDA5_2 Caspase ac 48.2 1E+02 0.0022 22.1 6.7 12 302-313 51-62 (88)
415 PRK13342 recombination factor 47.9 2.7E+02 0.0059 27.0 19.2 21 196-216 244-264 (413)
416 PF07064 RIC1: RIC1; InterPro 47.5 2.1E+02 0.0046 25.6 14.8 28 79-106 84-111 (258)
417 PRK10941 hypothetical protein; 47.3 2.2E+02 0.0047 25.7 10.6 78 115-193 184-262 (269)
418 KOG1308 Hsp70-interacting prot 47.1 14 0.00029 33.9 2.0 96 124-221 126-221 (377)
419 KOG0376 Serine-threonine phosp 47.1 54 0.0012 31.7 5.9 105 83-192 10-115 (476)
420 PF14853 Fis1_TPR_C: Fis1 C-te 46.3 76 0.0016 20.2 5.0 22 294-315 8-29 (53)
421 COG5108 RPO41 Mitochondrial DN 46.0 1.4E+02 0.003 30.5 8.6 91 117-210 33-131 (1117)
422 PF11817 Foie-gras_1: Foie gra 44.6 1.3E+02 0.0027 26.8 7.8 58 431-488 182-244 (247)
423 PF09868 DUF2095: Uncharacteri 44.4 1E+02 0.0022 23.2 5.7 41 71-118 61-101 (128)
424 PF03745 DUF309: Domain of unk 43.5 85 0.0018 20.7 4.9 15 125-139 12-26 (62)
425 KOG4642 Chaperone-dependent E3 42.1 2.4E+02 0.0053 24.8 10.9 119 262-384 20-144 (284)
426 KOG2396 HAT (Half-A-TPR) repea 41.7 3.6E+02 0.0078 26.7 36.3 390 95-503 89-536 (568)
427 KOG1586 Protein required for f 41.1 2.5E+02 0.0054 24.7 21.7 25 262-286 164-188 (288)
428 KOG4567 GTPase-activating prot 41.1 2E+02 0.0044 26.3 8.1 71 132-207 263-343 (370)
429 PF10366 Vps39_1: Vacuolar sor 41.0 1.5E+02 0.0033 22.2 7.1 26 360-385 42-67 (108)
430 PRK08691 DNA polymerase III su 40.8 3.6E+02 0.0079 28.3 11.0 85 374-461 181-279 (709)
431 PF09986 DUF2225: Uncharacteri 40.7 2.4E+02 0.0052 24.4 10.9 67 430-496 121-199 (214)
432 PRK14956 DNA polymerase III su 39.4 4E+02 0.0087 26.5 11.5 38 426-463 247-284 (484)
433 KOG0376 Serine-threonine phosp 39.3 56 0.0012 31.6 4.8 103 365-473 12-116 (476)
434 TIGR02508 type_III_yscG type I 39.3 1.6E+02 0.0034 21.9 9.0 52 260-317 47-98 (115)
435 KOG3364 Membrane protein invol 38.6 2E+02 0.0043 22.8 10.3 68 389-456 29-100 (149)
436 PF08424 NRDE-2: NRDE-2, neces 38.0 3.4E+02 0.0073 25.3 17.7 76 200-277 49-127 (321)
437 KOG3677 RNA polymerase I-assoc 37.9 3E+02 0.0065 26.5 8.9 35 266-300 363-397 (525)
438 PRK11639 zinc uptake transcrip 37.8 2.3E+02 0.005 23.4 8.2 60 419-479 18-77 (169)
439 PF09454 Vps23_core: Vps23 cor 37.5 99 0.0021 20.7 4.5 48 425-473 6-53 (65)
440 KOG2297 Predicted translation 37.5 3.3E+02 0.0071 25.0 14.7 34 105-139 159-194 (412)
441 PF02847 MA3: MA3 domain; Int 37.2 1.5E+02 0.0032 22.2 6.3 19 189-207 9-27 (113)
442 PF11817 Foie-gras_1: Foie gra 37.0 2E+02 0.0043 25.6 7.8 56 153-208 184-244 (247)
443 PRK14951 DNA polymerase III su 36.9 5E+02 0.011 26.9 12.1 84 375-461 187-284 (618)
444 PRK07003 DNA polymerase III su 36.8 4.4E+02 0.0095 28.1 10.8 84 374-460 181-278 (830)
445 PRK14958 DNA polymerase III su 36.0 4.7E+02 0.01 26.4 11.5 83 377-462 184-280 (509)
446 PF04190 DUF410: Protein of un 35.4 3.3E+02 0.0072 24.4 15.6 25 146-170 89-113 (260)
447 COG4003 Uncharacterized protei 35.4 1.6E+02 0.0034 20.7 6.1 37 70-113 30-66 (98)
448 cd07153 Fur_like Ferric uptake 35.2 1.3E+02 0.0028 22.7 5.7 47 433-479 6-52 (116)
449 PF12926 MOZART2: Mitotic-spin 35.0 1.7E+02 0.0037 20.9 7.5 43 448-490 29-71 (88)
450 PF02847 MA3: MA3 domain; Int 34.8 1.4E+02 0.003 22.3 5.8 24 396-419 6-29 (113)
451 TIGR02270 conserved hypothetic 34.5 4.4E+02 0.0096 25.6 26.8 236 82-348 43-278 (410)
452 smart00386 HAT HAT (Half-A-TPR 34.1 76 0.0016 16.6 3.9 15 92-106 2-16 (33)
453 PF08311 Mad3_BUB1_I: Mad3/BUB 34.1 2.2E+02 0.0048 22.0 8.1 77 408-489 49-126 (126)
454 PRK11639 zinc uptake transcrip 34.0 2.3E+02 0.0049 23.4 7.2 24 196-219 39-62 (169)
455 PF10475 DUF2450: Protein of u 33.8 3.7E+02 0.0081 24.6 9.9 113 117-240 103-220 (291)
456 KOG1308 Hsp70-interacting prot 33.8 25 0.00054 32.3 1.6 117 369-490 126-243 (377)
457 PRK09857 putative transposase; 33.2 2.7E+02 0.0058 25.6 8.1 57 439-496 218-274 (292)
458 KOG0687 26S proteasome regulat 32.7 4.1E+02 0.0089 24.7 14.8 92 326-419 108-208 (393)
459 KOG0687 26S proteasome regulat 32.5 4.1E+02 0.009 24.7 14.5 98 252-351 104-210 (393)
460 KOG0292 Vesicle coat complex C 32.1 1.4E+02 0.0031 31.6 6.5 46 124-175 655-700 (1202)
461 COG4941 Predicted RNA polymera 31.9 4.3E+02 0.0094 24.7 11.2 125 268-395 272-403 (415)
462 PF10366 Vps39_1: Vacuolar sor 31.8 2.2E+02 0.0048 21.4 8.1 26 395-420 42-67 (108)
463 smart00804 TAP_C C-terminal do 31.0 51 0.0011 21.9 2.3 22 91-112 39-61 (63)
464 PRK09462 fur ferric uptake reg 30.9 2.8E+02 0.006 22.2 8.3 37 442-478 32-68 (148)
465 PF03745 DUF309: Domain of unk 30.5 1.6E+02 0.0035 19.4 5.1 50 86-135 8-62 (62)
466 PF01475 FUR: Ferric uptake re 30.4 1.5E+02 0.0033 22.6 5.4 40 468-507 13-52 (120)
467 PF09477 Type_III_YscG: Bacter 30.2 2.4E+02 0.0052 21.2 8.5 78 92-176 21-98 (116)
468 KOG4814 Uncharacterized conser 29.9 5.3E+02 0.011 26.6 9.7 84 404-489 366-455 (872)
469 PF02607 B12-binding_2: B12 bi 29.4 1.2E+02 0.0026 20.9 4.2 35 89-123 13-47 (79)
470 COG3107 LppC Putative lipoprot 29.1 6E+02 0.013 25.5 10.9 84 83-167 69-156 (604)
471 KOG4814 Uncharacterized conser 28.7 5.8E+02 0.012 26.3 9.7 95 78-175 356-456 (872)
472 PF15297 CKAP2_C: Cytoskeleton 28.7 5E+02 0.011 24.4 10.0 41 394-434 142-182 (353)
473 PF09477 Type_III_YscG: Bacter 28.7 2.6E+02 0.0056 21.1 8.6 50 400-455 48-97 (116)
474 KOG0686 COP9 signalosome, subu 28.3 5.5E+02 0.012 24.8 15.1 23 255-277 153-175 (466)
475 PF09868 DUF2095: Uncharacteri 27.8 2.7E+02 0.0058 21.1 5.6 24 399-422 68-91 (128)
476 KOG1498 26S proteasome regulat 27.5 5.5E+02 0.012 24.6 15.5 109 397-505 136-256 (439)
477 KOG3364 Membrane protein invol 27.4 3.2E+02 0.0069 21.7 9.1 22 399-420 78-99 (149)
478 KOG1839 Uncharacterized protei 27.3 9E+02 0.02 27.4 11.6 101 250-350 971-1085(1236)
479 COG0790 FOG: TPR repeat, SEL1 26.9 4.8E+02 0.01 23.6 24.9 18 89-106 53-70 (292)
480 PF11838 ERAP1_C: ERAP1-like C 26.8 5E+02 0.011 23.9 22.1 80 234-316 147-230 (324)
481 PF02184 HAT: HAT (Half-A-TPR) 26.8 1.3E+02 0.0027 16.9 3.4 23 92-116 2-24 (32)
482 KOG4642 Chaperone-dependent E3 26.4 4.6E+02 0.0099 23.2 11.1 79 126-208 24-104 (284)
483 KOG1166 Mitotic checkpoint ser 25.8 3.8E+02 0.0082 29.4 8.7 60 404-463 90-150 (974)
484 PF15469 Sec5: Exocyst complex 25.8 3.9E+02 0.0085 22.2 10.7 117 79-220 59-177 (182)
485 cd07153 Fur_like Ferric uptake 25.8 1.9E+02 0.0041 21.8 5.1 44 294-337 7-50 (116)
486 PF04762 IKI3: IKI3 family; I 25.4 9.5E+02 0.021 26.6 17.6 22 82-103 699-720 (928)
487 PF11838 ERAP1_C: ERAP1-like C 24.7 5.5E+02 0.012 23.6 22.6 82 268-352 146-231 (324)
488 PF10255 Paf67: RNA polymerase 24.4 6.6E+02 0.014 24.4 13.2 94 81-174 79-191 (404)
489 KOG1839 Uncharacterized protei 24.4 1E+03 0.023 26.9 11.5 23 182-204 973-995 (1236)
490 PF13934 ELYS: Nuclear pore co 23.9 4.9E+02 0.011 22.7 13.2 21 398-418 114-134 (226)
491 COG2912 Uncharacterized conser 23.9 5.4E+02 0.012 23.2 8.8 69 432-503 186-254 (269)
492 PF04910 Tcf25: Transcriptiona 22.7 6.7E+02 0.015 23.9 21.4 57 224-280 110-167 (360)
493 COG2178 Predicted RNA-binding 22.5 4.9E+02 0.011 22.1 10.2 17 158-174 40-56 (204)
494 PRK06645 DNA polymerase III su 22.1 8.2E+02 0.018 24.7 11.0 92 409-503 191-298 (507)
495 PF07443 HARP: HepA-related pr 22.0 30 0.00065 22.1 0.0 27 479-505 9-35 (55)
496 PF12926 MOZART2: Mitotic-spin 22.0 3.1E+02 0.0067 19.7 8.2 42 308-349 29-70 (88)
497 PF11123 DNA_Packaging_2: DNA 21.9 2.8E+02 0.006 19.1 4.9 35 90-125 10-44 (82)
498 PF01475 FUR: Ferric uptake re 21.7 3E+02 0.0065 20.9 5.6 45 362-406 12-56 (120)
499 KOG1498 26S proteasome regulat 21.5 7.3E+02 0.016 23.8 16.7 90 361-457 135-242 (439)
500 PRK09857 putative transposase; 21.3 6.4E+02 0.014 23.1 10.4 15 305-319 258-272 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-68 Score=544.97 Aligned_cols=436 Identities=19% Similarity=0.293 Sum_probs=400.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------------------------------CCHhhHHHHHHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--------------------------------PSSISYASLIEA 121 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------~~~~~~~~li~~ 121 (514)
.++...|..++..|++.|++++|+++|++|.+.|+. ||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345556667777777777777777777777766642 788899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010236 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE--MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976 6789999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHH
Q 010236 280 QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359 (514)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (514)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 010236 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 439 (514)
|+.+|.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----C-------------------CCcchHHHHHHHHHhCCCCCC
Q 010236 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----A-------------------KKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~ 496 (514)
.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999876542 1 123679999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010236 497 RKARQILQSALVV 509 (514)
Q Consensus 497 ~~~~~~l~~a~~~ 509 (514)
..|+..++.+++.
T Consensus 847 ~~T~~~vL~cl~~ 859 (1060)
T PLN03218 847 MEVLSQVLGCLQL 859 (1060)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999966543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-67 Score=542.27 Aligned_cols=436 Identities=18% Similarity=0.301 Sum_probs=422.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCChhhHHHHHHHHHccC
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRS--KGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g 231 (514)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 678999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010236 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.+..|+..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----c-------------------CCHHHHHH
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----A-------------------GKYKEALS 448 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~ 448 (514)
..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ + +..++|..
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 999999999999999999999999999999999999999999976432 1 22478999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010236 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|++++..
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 9999999999999999999998888899999999999999989999999999999999854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.7e-65 Score=534.59 Aligned_cols=421 Identities=21% Similarity=0.292 Sum_probs=409.7
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+|+.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|.++++.+.+.|+.++..+||.||++|+++|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|+
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 588999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010236 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.. ++.||..||..++.+|++.|.++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .||
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d 553 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKD 553 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCC
Confidence 9986 6999999999999999999999999999999999999999999999999999999999999999986 589
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHH
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMK 470 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~ 470 (514)
..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|+.++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 7899999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010236 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+|.+.|++++|.+++++|. +.||..+|..|+.++..
T Consensus 634 ~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRI 669 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Confidence 9999999999999999994 89999999999999864
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-64 Score=527.83 Aligned_cols=428 Identities=21% Similarity=0.272 Sum_probs=395.8
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..+||.++||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.+++..+.+.|+.||..+|+
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+||.+|++.|+++.|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
+.+.|.+++..+.+.|+.||..+||.||.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999974 699999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010236 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|..++..+|+.|+++|++.|++++|.++|++|.+ +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888753 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------------------------------------------------
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGI------------------------------------------------ 423 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------------------------------------------------ 423 (514)
..+|+.+|.+|++.|+.++|.++|++|.. ++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 45666666666666666666666666543 22
Q ss_pred -----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHH
Q 010236 424 -----------------EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYK 486 (514)
Q Consensus 424 -----------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (514)
.||..+|++||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+
T Consensus 534 y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred HHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 356667888888999999999999999999999999999999999999999999999999999
Q ss_pred HHH-hCCCCCCHHHHHHHHHHHHHhhh
Q 010236 487 QME-SSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 487 ~m~-~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
+|. +.|+.|+..+|..++.++.+.|+
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 999 67999999999999999998875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.6e-64 Score=513.20 Aligned_cols=425 Identities=21% Similarity=0.311 Sum_probs=409.3
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567799999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.++.+|++.|+++.|.++|++|.+ ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
..+.+.+++..+.+.|+.+|..+||+||++|+++|++++|.++|++|.+ +|.++||.||.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999974 599999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010236 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|+.++..+++.|+++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 478
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHH
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD-IGISPDLVTYSTLMK 470 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~ 470 (514)
..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.+++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999975 699999999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010236 471 AFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
+|.+.|++++|.+++++| ++.||..+|+.|+.++...++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998876 589999999999999987653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-60 Score=487.88 Aligned_cols=424 Identities=18% Similarity=0.266 Sum_probs=406.6
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
+..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999996 58999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|.++|++|. ++|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999996 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 010236 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS 391 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 391 (514)
+|.+.|+.||..++++++.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999964 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEP-EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999976 599999999999999999999999999998865 57899999999999
Q ss_pred HHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhhh
Q 010236 471 AFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLEQ 512 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~~ 512 (514)
+|...|+++.|..+++++.+ +.|+ ..+|..|++.+.+.|+
T Consensus 503 a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999999999975 6674 5789999999888765
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=5.8e-27 Score=250.97 Aligned_cols=423 Identities=13% Similarity=0.059 Sum_probs=328.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 45567777777777777777777777776653 3445566677777777777777777777777654 456667777777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
.+.+.|+.++|...++++.+.+. .+...+..++..+...|++++|..+++++.... +.+..+|..+..++...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 77778888888888877766543 455667777888888888888888888877653 3466778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888887664 4466777788888888888888888888887653 33567788888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010236 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
.+ +.+...+..+...+...|++++|...++.+..... +..++..+..++.+.|++++|.+.++.+.+.. +.+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 64 44667777788888888889999888888887653 33666778888888899999999888888764 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...|...|+.++|.+.|+++.+.. +.+..+++.+...+...|+ .+|+..++++.+.... +..++..+...+.+.
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 888888888999999999999988774 5677888889999999999 8899999988775433 566778888899999
Q ss_pred CCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010236 476 KKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 476 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
|++++|.++++++.+.+.. +..++..+..++...|+
T Consensus 851 g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGR 886 (899)
T ss_pred CCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCC
Confidence 9999999999999986543 78888888888887765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=6.5e-27 Score=250.60 Aligned_cols=402 Identities=12% Similarity=0.071 Sum_probs=357.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...+..+...+.+.|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++.
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 575 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQ 575 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHH
Confidence 34567788899999999999999999998875 5578889999999999999999999999998865 566778889999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
.+.+.|++++|.++++.+.+... .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999987643 577899999999999999999999999998764 3367788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|...++++.+.. +.+...+..++..+...|++++|.++++.+.+.. +++...+..+...+.+.|++++|.+.|+++.+
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999864 5568899999999999999999999999998875 44677888899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010236 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
.+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...|+++.+... .+..++
T Consensus 732 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 807 (899)
T TIGR02917 732 RA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVL 807 (899)
T ss_pred hC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 64 555778889999999999999999999998875 56788999999999999999999999999998753 578889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...+...|+ .+|+..++++.+.. +-+..++..+...+...|++++|.+.|+++.+.+.. +..++..+..++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHc
Confidence 999999999999 88999999998763 446677888999999999999999999999997765 889999999999999
Q ss_pred CCcchHHHHHHHHHh
Q 010236 476 KKFHKVPEIYKQMES 490 (514)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (514)
|++++|.+++++|++
T Consensus 885 g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 885 GRKAEARKELDKLLN 899 (899)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999999863
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.7e-21 Score=187.52 Aligned_cols=303 Identities=12% Similarity=0.114 Sum_probs=145.3
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCh
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~ 233 (514)
+...|++++|.+.|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3455556666666666555432 2344555555555555555555555555554321111 12334444444445555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 55555555444431 22344444444444444444444444444443321111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 010236 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (514)
Q Consensus 314 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 393 (514)
....+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.++++++...+......
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 00122233334444555555555555544432 2233344445555555555555555555555432222223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
++..++.+|...|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 4455555555556666666655555543 344444455555556666666666666555543 355555555555444
Q ss_pred c---CCCcchHHHHHHHHHhCCCCCCH
Q 010236 474 R---AKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 474 ~---~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
. .|+.+++..++++|.+.++.|++
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2 33555566666666555554443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.8e-21 Score=185.04 Aligned_cols=303 Identities=16% Similarity=0.117 Sum_probs=211.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhc
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILLRGFLKK 160 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 160 (514)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567799999999999998874 44566888888899999999999999998887532111 24577788888888
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHH
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a 236 (514)
|+++.|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 888888888888877533 45677888888888888888888888888776533221 1344555666777777788
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010236 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
.+.++++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777653 33455666677777777777777777777765432222345666777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---cCCcchHHHHHHHHHHcCCCCCHH
Q 010236 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ---YGRFRDPEECIAALKLEGLQPSGS 393 (514)
Q Consensus 317 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 393 (514)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 345555566667777777777777777776655 3455566666655553 346667777777776655555443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.4e-19 Score=194.95 Aligned_cols=399 Identities=14% Similarity=0.082 Sum_probs=267.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHH-----------
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP-KLRFYN----------- 151 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~----------- 151 (514)
...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455678899999999999998864 4478889999999999999999999999988754211 111121
Q ss_pred -HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH---
Q 010236 152 -ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY--- 227 (514)
Q Consensus 152 -~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--- 227 (514)
.....+.+.|++++|.+.|+++.+... .+...+..+...+...|++++|++.|++..+.... +...+..+...+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 224567789999999999999998654 45677888899999999999999999999876322 334444444333
Q ss_pred ---------------------------------------HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010236 228 ---------------------------------------RDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 228 ---------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
...|++++|++.+++.++.. +.+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33455555555555555442 22344444455555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHccCCHH
Q 010236 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK---------IFITIISCLGELGKWD 339 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~~~ 339 (514)
++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+......+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 55555555554431 1122223333333444555555555554433211111110 1122344556667777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+|..+++. .+.+...+..+...+.+.|++++|.+.|+++.+..+ .+...+..++..+...|++++|.+.++...
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77766651 244556677888889999999999999999987653 367788888899999999999999999877
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--c---CHHHHHHHHHHHHcCCCcchHHHHHHHHHh-CCC
Q 010236 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--P---DLVTYSTLMKAFIRAKKFHKVPEIYKQMES-SGC 493 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~ 493 (514)
+.. +.+...+..+..++...|++++|.++++++...... | +...+..+...+...|++++|.+.|++... .|+
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 652 335566777888888999999999999998764322 1 224566677888899999999999998864 344
Q ss_pred C
Q 010236 494 T 494 (514)
Q Consensus 494 ~ 494 (514)
.
T Consensus 744 ~ 744 (1157)
T PRK11447 744 T 744 (1157)
T ss_pred C
Confidence 4
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=5.9e-19 Score=178.72 Aligned_cols=398 Identities=12% Similarity=0.047 Sum_probs=296.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677889999999999999998876 6788889999999999999999999999999875 4567788999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-------------------------- 213 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------------------- 213 (514)
.|++++|...|......+...+.. ...++..+.. ..+........+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999998887765543211211 1111111111 011111111111000
Q ss_pred ---CCCh---hhHHHHHHH---HHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010236 214 ---QLNS---FVYGKVIGL---YRDNGMWKKAVGIVEEIREMG--LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 214 ---~~~~---~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
..+. ..+..+... ....+++++|.+.|+...+.+ .+.....++.+...+...|++++|+..|++..+.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 0000 011111111 123468899999999998764 2334567888888999999999999999999875
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 010236 283 IRPD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361 (514)
Q Consensus 283 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (514)
.|+ ...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.++.. +.+...+.
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~ 437 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHI 437 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHH
Confidence 344 5688888899999999999999999998753 3357888889999999999999999999999875 45677788
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-----H-HHHHHHH
Q 010236 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-----V-MLNVLIN 435 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-----~-~~~~li~ 435 (514)
.+...+.+.|++++|...|++..... +.+...|+.+...+...|++++|.+.|++..+.....+. . .++..+.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 89999999999999999999988753 335778889999999999999999999998875311111 1 1222223
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+...|++++|.+++++..+.... +...+..+...+.+.|++++|.+.|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344579999999999998876432 4567889999999999999999999999874
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-20 Score=172.46 Aligned_cols=370 Identities=15% Similarity=0.164 Sum_probs=261.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHh-HHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET-YEILL 189 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li 189 (514)
-..+|..+.+.+-..|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|....+.+ |+... .+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 34567777777777788888888888777754 3456677777778888888888888777777643 44332 23344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 010236 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 190 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 269 (514)
..+...|+.++|...|.+..+... -=...|+.|...+-..|+...|++.|++..+.. +.-...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcch
Confidence 444556777788777777766521 124567777777777888888888888877653 222556777777787788888
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 010236 270 EALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIISCLGELGKWDVIKKNFEN 347 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (514)
.|...|.+.... .| ..+.+..|...|...|..|-|+..|++..+. .|+ +..|+.+..++-..|+..+|.+.+..
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 888877776654 33 3456666777777888888888888887764 333 56777888888888888888888888
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-
Q 010236 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN- 426 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~- 426 (514)
.+... +......+.|...|...|.+++|..+|....+-.. --....+.|...|-++|++++|+..+++..+. .|+
T Consensus 346 aL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~f 421 (966)
T KOG4626|consen 346 ALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTF 421 (966)
T ss_pred HHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchH
Confidence 77764 34566677778888888888888888877765421 12345677777888888888888888877763 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
...|+.+...|-..|+.+.|++.+.+.+.. .|. ...++.|...|..+|+..+|++-+++..+ ++||.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 357778888888888888888888877764 333 34677778888888888888888888776 66664
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.2e-18 Score=185.80 Aligned_cols=402 Identities=13% Similarity=0.025 Sum_probs=262.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------C--------------CCHhhH---------
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGF------------------H--------------PSSISY--------- 115 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------~--------------~~~~~~--------- 115 (514)
...+..+...+.+.|++++|++.++++.+... . |+....
T Consensus 181 ~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 181 TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 44677788888899999999999998765320 0 000000
Q ss_pred ------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc-Ch
Q 010236 116 ------------ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR-NQ 182 (514)
Q Consensus 116 ------------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 182 (514)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ..
T Consensus 261 ~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 261 QQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 011334567789999999999988764 4577888888999999999999999999888754322 11
Q ss_pred HhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 010236 183 ETYE------------ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (514)
Q Consensus 183 ~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (514)
..|. .....+.+.|++++|...|++..+... .+...+..+...+...|++++|++.|+++.+.. +.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 1222 224456788999999999999888743 356677778888999999999999999988764 33
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR--------PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
+...+..+...|. .++.++|..+++.+...... -....+..+...+...|++++|++.|++..+... -+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence 4444544444442 23444444444433211000 0011222333444455555555555555554321 133
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHH------------------------------------------
Q 010236 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY------------------------------------------ 360 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------------------------ 360 (514)
..+..+...+.+.|++++|...++++.+.. +.+...+
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 344444555555555555555555554432 1122222
Q ss_pred --HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 010236 361 --AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (514)
Q Consensus 361 --~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (514)
..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+.
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1234445556666666666651 23455567778888999999999999999998864 456788999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
..|++++|.+.++.+.+... .+...+..+..++...|++++|.++++++...
T Consensus 649 ~~g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HCCCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999998876432 25566778888999999999999999999874
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=6.1e-19 Score=181.80 Aligned_cols=415 Identities=10% Similarity=0.016 Sum_probs=316.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
..-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.+++++..+.. +.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3456677788999999999999998632 5566679999999999999999999999998864 4557778889999999
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
.|++++|...++++.+..+ .+.. +..+...+...|+.++|+..++++.+.... +...+..+..++...+..+.|++.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 9999999999999988643 4555 888999999999999999999999987433 556666778888889999999998
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHh
Q 010236 240 VEEIREMGLSLDR------QIYNSIIDTFG-----KYGEL---VEALEVFEKMQQE-SIRPDIV-TW----NSLIRWHCK 299 (514)
Q Consensus 240 ~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~li~~~~~ 299 (514)
++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+..+..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 886654 2221 11222232222 22234 7788899888854 1223221 11 111344567
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCcch
Q 010236 300 AGDVAKALELFTQMQEQGFY-PDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK---IGAIYAILVDIYGQYGRFRD 375 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 375 (514)
.|++++|+..|+++.+.+.. |+. ....+..++...|++++|...++.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987532 332 22335778999999999999999988654221 13456667778899999999
Q ss_pred HHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 010236 376 PEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAG 441 (514)
Q Consensus 376 A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (514)
|.++++.+..... .|+ ...+..+...+...|+.++|++.++++.... +.+...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999987532 123 2345567778899999999999999998763 556788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010236 442 KYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
++++|++.+++..+..+. +...+...+..+.+.|++++|.++++++++ ..|+......+-+.+
T Consensus 408 ~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 408 WPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 999999999999885422 466777788889999999999999999998 678777666665554
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-19 Score=167.45 Aligned_cols=379 Identities=16% Similarity=0.175 Sum_probs=317.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH-HHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY-NILLR 155 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~ 155 (514)
..+|..+.+.+...|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.... +.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 3578889999999999999999999999874 335788999999999999999999999999875 4665443 44555
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYGKVIGLYRDNGMWK 234 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~ 234 (514)
..-..|++.+|...|.+..+... -=...|+.|...+-..|+...|+.-|++.... .|+ ...|-.|...|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 55668999999999998887533 23568999999999999999999999999876 343 567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
.|...|.+..... +....++..+...|...|.+|-|+..|++..+. .|+ ...|+.|..++-..|++.+|...|.+.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999999988753 345778888888999999999999999999876 444 578999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-H
Q 010236 314 QEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-G 392 (514)
Q Consensus 314 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 392 (514)
.... .--....+.|...+...|.+++|..+|....+.. +.-...++.|...|-+.|++++|...+++..+- +|+ .
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 8753 2245678889999999999999999999998764 334667899999999999999999999999864 554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHH
Q 010236 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDL-VTYSTLMK 470 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 470 (514)
..|+.+...|-..|+.+.|.+.+.+.... .|. ....+.|...|-..|++.+|++-+++..+ ++||. ..|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHH
Confidence 57888889999999999999999998875 443 46788999999999999999999999987 45663 34555554
Q ss_pred HH
Q 010236 471 AF 472 (514)
Q Consensus 471 ~~ 472 (514)
++
T Consensus 499 ~l 500 (966)
T KOG4626|consen 499 CL 500 (966)
T ss_pred HH
Confidence 43
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.3e-18 Score=173.81 Aligned_cols=331 Identities=10% Similarity=0.006 Sum_probs=202.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010236 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
..++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.++++.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345556667777777777777766653 2334455555566666777777777777776654 34455666666777777
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (514)
|++++|...+++..+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 777777777777766432 34556666677777777777777777766554322 22222222 2356667777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 010236 241 EEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK----ALELFTQMQEQ 316 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 316 (514)
+.+.+....++...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++ |+..|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 776655322333444445566667777777777777766543 2245556666666777777664 66667766654
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH-HHH
Q 010236 317 GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG-SMF 395 (514)
Q Consensus 317 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 395 (514)
. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++++...+ |+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 2 2245566666666777777777777777766654 3345556666666777777777777777666543 222 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
..+..++...|+.++|.+.|++..+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33445566667777777777766654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.1e-18 Score=172.84 Aligned_cols=299 Identities=11% Similarity=0.023 Sum_probs=182.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
+..++......|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 79 l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 79 LRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL 156 (656)
T ss_pred HHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3334455556677777777777776653 3345566666667777777777777777776643 3445566666777777
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
.|++++|...++.+...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~ 234 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT 234 (656)
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777666554332 22223222 23566677777777777766553333344444445666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVE----ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++++.+.. +.+...+..+...+...|++++ |...|++..+.. +.+...+..+...+.+.|++++|+..+++..+
T Consensus 235 ~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 235 GESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766653 3455666666777777777664 666777666542 22455666666777777777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 010236 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 386 (514)
.. +.+...+..+..++.+.|++++|...++.+.+.+. .+...+..+..++...|+.++|...|++..+.
T Consensus 313 l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 313 TH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 42 22344555566666777777777777776665532 22233333455666677777777777776654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=6.9e-17 Score=163.70 Aligned_cols=377 Identities=11% Similarity=0.002 Sum_probs=274.3
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..|+...|..+...|.+.|++++|++.+++..+.. +.+...|..+..++...|++++|+.-|..+...+-..+.. ...
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~ 233 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQ 233 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHH
Confidence 34667789999999999999999999999999874 4467789999999999999999999887765543111111 111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc---------------------------CCCcC-hHhHHHHHHH---HHhcCCHHHH
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDM---------------------------GICRN-QETYEILLDY---HVNAGRLDDT 201 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~---------------------------~~~~~-~~~~~~li~~---~~~~g~~~~A 201 (514)
++..+........+...++.-... ...+. ...+..+... ....+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 111111100011111111100000 00000 0001111111 1224689999
Q ss_pred HHHHHHHHHcC-CCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 202 WLIINEMRSKG-FQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 202 ~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.+.|++..+.+ ..| ....+..+...+...|++++|+..+++.++.. +.....|..+...+...|++++|...|++..
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999998765 223 45667888888999999999999999999864 3346788889999999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHH
Q 010236 280 QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAI 359 (514)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (514)
+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...
T Consensus 393 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~ 469 (615)
T TIGR00990 393 KLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDV 469 (615)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHH
Confidence 763 3357888999999999999999999999998853 2356677788889999999999999999998764 556888
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 010236 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS------MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVL 433 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 433 (514)
++.+...+...|++++|.+.|++........+.. .++..+..+...|++++|.+++++..+.. +.+...+..+
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~l 548 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 9999999999999999999999988764321111 12222233445699999999999988764 3345678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 010236 434 INAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
...+.+.|++++|++.|++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=2.9e-16 Score=159.07 Aligned_cols=406 Identities=10% Similarity=0.050 Sum_probs=279.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010236 87 CCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++..... +........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 35778888888888888776 3443 233 77777777888888888888877211 122233333355777778888
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 010236 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
.|.++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88888888887654 34566667777888888888888888888766 4444444444444444566656888888887
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHH------------------------------------------------HHHHH
Q 010236 245 EMGLSLDRQIYNSIIDTFGKYGELVEA------------------------------------------------LEVFE 276 (514)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~~~~~~A------------------------------------------------~~~~~ 276 (514)
+.. +.+...+..++.++.+.|-...| +.-++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 764 33444544444444444433333 33333
Q ss_pred HHHHC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 277 KMQQE-SIRPDI-VTW----NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 277 ~m~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 33321 111221 111 234556778888999999999998887666677888899999999999999999998866
Q ss_pred cC-----CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHHHH
Q 010236 351 RG-----HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL-----------QPS---GSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 351 ~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~a 411 (514)
.. .+++......|.-+|...+++++|..+++.+.+..+ .|+ ...+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 123444457788888899999999999999887322 122 22344566778888999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
++.++++.... +-|......+...+...|.+.+|.+.++........ +..+....+.++...|++++|..+.+...+
T Consensus 436 e~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~- 512 (822)
T PRK14574 436 QKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS- 512 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 99999997764 668888888999999999999999999777665322 566777788888888999999998888877
Q ss_pred CCCCCHHHHHHHH
Q 010236 492 GCTPDRKARQILQ 504 (514)
Q Consensus 492 g~~p~~~~~~~l~ 504 (514)
..|+......|-
T Consensus 513 -~~Pe~~~~~~l~ 524 (822)
T PRK14574 513 -RSPEDIPSQELD 524 (822)
T ss_pred -hCCCchhHHHHH
Confidence 566665444443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=4.9e-16 Score=160.45 Aligned_cols=389 Identities=11% Similarity=0.046 Sum_probs=290.2
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010236 97 MALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+..++. ...+ +.+..-..-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++..+.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 3222 4455566667778889999999999999998633 456667999999999999999999999998886
Q ss_pred CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010236 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (514)
.+ .+...+..+...+...|++++|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 79 ~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 79 EP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 43 456778889999999999999999999998873 22455 8888889999999999999999999875 44666777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHC-CCCCC
Q 010236 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDI------VTWNSLIRWHC-----KAGDV---AKALELFTQMQEQ-GFYPD 321 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~ 321 (514)
.+..++...+..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 788888899999999999987664 2321 11122222221 12234 7788899988854 22333
Q ss_pred HH-HHH----HHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHH
Q 010236 322 PK-IFI----TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP---SGS 393 (514)
Q Consensus 322 ~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 393 (514)
.. .+. ..+.++...|++++|+..|+.+.+.+.+........+...|...|++++|...|+++....... ...
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 21 111 1134456779999999999999887632122222335778999999999999999987654221 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGI-----------EPN---LVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
....+..++...|++++|.++++.+.+... .|+ ...+..+...+...|++++|+++++++....+.
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 466677788999999999999999886521 123 234566778899999999999999999876433
Q ss_pred cCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 460 PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 460 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
+...+..+...+...|++++|++.+++..+ +.||..
T Consensus 392 -n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~ 427 (765)
T PRK10049 392 -NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI 427 (765)
T ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh
Confidence 678899999999999999999999999998 668753
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=7.6e-17 Score=142.63 Aligned_cols=411 Identities=14% Similarity=0.115 Sum_probs=245.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCChHH-HHHHHHHHHHcC-----------
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS--VGRTLE-ADAIFQEMVCFG----------- 142 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~~~~~g----------- 142 (514)
+++=|.|+.. ..+|.+.++.-+|+.|.+.|++.+...-..+++..+- +.++-- -++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3455666554 5679999999999999999988888877777665442 222211 122333333322
Q ss_pred --------CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010236 143 --------FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (514)
Q Consensus 143 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 214 (514)
.+.+..++..+|.+.|+.-..+.|.+++++-.+...+.+..+||.+|.+-.-.. ..++..+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC
Confidence 134456677777777777777777777777666656666777777766543222 25666777777777
Q ss_pred CChhhHHHHHHHHHccCChHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHC----CCC-
Q 010236 215 LNSFVYGKVIGLYRDNGMWKKA----VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQE----SIR- 284 (514)
Q Consensus 215 ~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~----~~~- 284 (514)
||..|+|.++.+..+.|+++.| .+++.+|.+.|++|+..+|..+|..+++.++..+ |..++.++... ..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 7777777777777777766543 4556666677777777777777777766665433 34444444321 111
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 010236 285 ---PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (514)
Q Consensus 285 ---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (514)
.|..-|...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....+.....+.....|+.+.-+-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 23344555666666666666666665554421 02222 233455666666666677777777777666556
Q ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHHH----
Q 010236 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG-LC--------E-----QTVKVLQ---- 416 (514)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~a~~~~~---- 416 (514)
|+..+...++++..-.++++-.-+++..++..|..-+.....-++..+++.. +. . -|..+++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666777777777777777777777776665444443333444444333 11 0 0111111
Q ss_pred ---HhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHH---HHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 417 ---LMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG-ISPDLV---TYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 417 ---~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
++... .......+.+.-.+.+.|+.++|.++|..+.+.+ -.|-.. ....+++.-.+.++...|..+++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 12222 2334445666677788888888888888875433 223333 33455666677778888888888886
Q ss_pred hCCCC
Q 010236 490 SSGCT 494 (514)
Q Consensus 490 ~~g~~ 494 (514)
..+..
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 65443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=4.6e-15 Score=153.54 Aligned_cols=405 Identities=13% Similarity=0.066 Sum_probs=269.7
Q ss_pred ccCcchHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 74 EFSGNSYNKS-IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 74 ~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
.|+....... ...|.+.|++++|++++.++.+.+ +.+..-...+..+|.. .++ +++..+++. .+..+...+.
T Consensus 178 ~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ 251 (987)
T PRK09782 178 SPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRI 251 (987)
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHH
Confidence 3344433334 889999999999999999999986 4455557777778887 466 777777553 2346788899
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCC-cChHhHHHH------------------------------HHHHHhcCCHHH
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEIL------------------------------LDYHVNAGRLDD 200 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l------------------------------i~~~~~~g~~~~ 200 (514)
.+...|.+.|+.++|.++++++...... |...+|.-+ +..+.+.++++.
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA 331 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999887643211 222222111 223333333333
Q ss_pred HHHHHH-----------------------------HHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc-----
Q 010236 201 TWLIIN-----------------------------EMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----- 246 (514)
Q Consensus 201 A~~~~~-----------------------------~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 246 (514)
+.++.. .|.... +-+......+.-...+.|+.++|.++++.....
T Consensus 332 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 332 AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred HHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 332211 111110 001111111111222333344444333332220
Q ss_pred ----------------------------------------------------------C-CCC--CHHHHHHHHHHHhcc
Q 010236 247 ----------------------------------------------------------G-LSL--DRQIYNSIIDTFGKY 265 (514)
Q Consensus 247 ----------------------------------------------------------~-~~~--~~~~~~~li~~~~~~ 265 (514)
+ .++ +...|..+...+..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 0 122 45566666666665
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010236 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6777788877776654 355444333444456889999999999887653 444455566677788889999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010236 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
+...+.. +.....+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|...+++..... +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 9888765 3333334444444455699999999999988764 567788888889999999999999999988874 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
+...++.+..++...|++++|++.+++..+..+. +...+..+..++...|++++|...+++..+ +.|+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 6677888888999999999999999998876443 677888999999999999999999999987 55654
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.6e-15 Score=147.50 Aligned_cols=427 Identities=12% Similarity=0.096 Sum_probs=276.9
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFH--PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--LRFY 150 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~ 150 (514)
-|++..+.|.+.|.-.|++..+..+...+...... .-..+|-.+.++|...|++++|...|.+..+.. ++ +..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 36778888999999999999999999988765311 123468889999999999999999999888754 44 3445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010236 151 NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG----RLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
-.+...|.+.|+++.+...|+.+.+..+ -+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 6688999999999999999999987543 45566677777777665 4466666666665543 3367777777777
Q ss_pred HHccCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHH
Q 010236 227 YRDNGMWKKAVGIVEEIR----EMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SIRPDI------VTWNSL 293 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~------~~~~~l 293 (514)
+....-+.. +..|..+. ..+-.+.....|.+...+...|+++.|...|...... ...+|. .+-..+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 766555544 66666543 4455678888999999999999999999999887654 122222 222334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 010236 294 IRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGR 372 (514)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 372 (514)
....-..++.+.|.+.|..+.+. -|.- ..|..++......+...+|...+......+ ..++.++..+...+.+...
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 55556667888888888888764 2332 233333323333456667777777766543 4455566666666666666
Q ss_pred cchHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 010236 373 FRDPEECIAALKLEG-LQPSGSMFCILANAYAQ------------QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV 439 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 439 (514)
+..|.+-|+.+...- ..+|..+.-+|...|.+ .+..++|+++|.+..+.. +-|...-|.+.-+++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 666666555554332 12344444444443332 134556666666665543 4455556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhh
Q 010236 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS-GCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~a~~~~~ 511 (514)
.|++.+|..+|.+.++.... +..+|.-+.++|...|++..|+++|+...+. +-.-+......|.+++...+
T Consensus 659 kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred ccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 66666666666666654321 3445666666666666666666666665543 33345555566666655544
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=2.5e-14 Score=148.14 Aligned_cols=201 Identities=11% Similarity=0.040 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHH
Q 010236 301 GDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (514)
Q Consensus 301 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (514)
++.++|+..+.+.... .|+......+...+...|++++|...++.+... +++...+..+...+.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455566655555443 344443333444445778888888888776554 233344556666777788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010236 381 AALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
++..+.+. .+...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|...+++..+..+.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd- 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN- 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 88776542 22233333334444568888888888888875 567778888888888999999999999988876433
Q ss_pred CHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010236 461 DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
+...+..+..++...|++++|++.+++..+ ..|+ ...+..+..++...|
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 566778888888888999999999888887 4553 445555555555444
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.8e-14 Score=127.85 Aligned_cols=360 Identities=15% Similarity=0.166 Sum_probs=187.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+..+|..||.++|+--..++|.+++++......+.+..+||.+|.+-.-.. ..++..+|....+.||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 345566666666666666666666666655555566666666665443221 2555666666666666666666666
Q ss_pred HHHhcCChhh----HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----ChhhHHH
Q 010236 156 GFLKKGLLGL----GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDD-TWLIINEMRS----KGFQL----NSFVYGK 222 (514)
Q Consensus 156 ~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~~----~~~~~~~ 222 (514)
+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.+... +.++| |...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 6666665543 34455556666666666666666666666555432 2233333222 12222 2334455
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010236 223 VIGLYRDNGMWKKAVGIVEEIREMG----LSLD---RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (514)
.+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.-...|+.|.-+-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5556666666666666555443211 1111 11233444555555555555566666555544455555555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCC
Q 010236 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGA---IYAILVDIYGQYGR 372 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 372 (514)
+..-.|.++-.-++|.++...|.......-.-++..+++ ....|+.. -+.....-++ ..-
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~----------------~k~hp~tp~r~Ql~~~~ak~a-ad~ 504 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR----------------DKLHPLTPEREQLQVAFAKCA-ADI 504 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------CCCCCCChHHHHHHHHHHHHH-HHH
Confidence 555555555555555555554432222222112211111 11111111 0111110000 000
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 010236 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-I---EPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~---~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
.+.....-.++... .......+..+-.+.+.|..++|.++|..+.+.+ - .|.......+++.-...+....|..
T Consensus 505 ~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 01111112223333 3345567777778889999999999999985543 2 2333334456666677788999999
Q ss_pred HHHHHHHCCC
Q 010236 449 VYHLMKDIGI 458 (514)
Q Consensus 449 ~~~~m~~~~~ 458 (514)
+++-|...+.
T Consensus 583 ~lQ~a~~~n~ 592 (625)
T KOG4422|consen 583 VLQLASAFNL 592 (625)
T ss_pred HHHHHHHcCc
Confidence 9998876543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=7.5e-14 Score=141.75 Aligned_cols=368 Identities=12% Similarity=0.029 Sum_probs=276.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.++..+...|+.++|+..+++..... +........+...+...|++++|+++|+++.+.. +.+...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence 78888888999999999999988321 2233334444668888899999999999999875 445677778888999999
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 010236 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (514)
+.++|++.++++.... |+...+..++..+...++..+|++.++++.+.... +...+..++.++.+.|-...|.++..
T Consensus 151 q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999998753 45555555555555566776799999999887422 56666666666666665544444433
Q ss_pred H------------------------------------------------HHHc-CCCCCH-HH----HHHHHHHHhccCC
Q 010236 242 E------------------------------------------------IREM-GLSLDR-QI----YNSIIDTFGKYGE 267 (514)
Q Consensus 242 ~------------------------------------------------~~~~-~~~~~~-~~----~~~li~~~~~~~~ 267 (514)
+ +... +-.|.. .. .--.+-++...++
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 2 2221 111221 11 1233456778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHH
Q 010236 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-----FYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
+.++++.|+.+...+.+....+-..+..+|...+++++|+.+|+++.... ..++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988765445577789999999999999999999997642 1223444577889999999999999
Q ss_pred HHHHHHHhcCC-----------CCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 010236 343 KNFENMKDRGH-----------GKI---GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (514)
Q Consensus 343 ~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (514)
.+++.+.+... .|+ ......++..+...|++.+|++.++++.... +-|......+.+.+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 99999987321 122 2345567788889999999999999998764 45888899999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.+|.+.++...... +-+..+....+.++...|++++|..+.+.+.+.
T Consensus 467 ~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 467 RKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999998777652 445677788889999999999999999988774
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2e-14 Score=139.94 Aligned_cols=402 Identities=13% Similarity=0.081 Sum_probs=300.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS--ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
+|-.+.+.|...|++++|...|.+..+.. ++. ..+-.+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhH
Confidence 46678899999999999999999988763 443 445667899999999999999999998864 5566777888888
Q ss_pred HHhcC----ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHH
Q 010236 157 FLKKG----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM----RSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 157 ~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~~ 228 (514)
|+..+ ..+.|..++.+..+.-+ .|...|..+...+-...-+.. +..|... ...+..+.+...|.+.....
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 87765 45777777777776542 577788888877766554444 6666544 45666688899999999999
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 010236 229 DNGMWKKAVGIVEEIREM---GLSLD------RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV-TWNSLIRWHC 298 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~---~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~ 298 (514)
..|++++|...|...... ...++ ..+-..+...+-..++.+.|.+.|..+... .|.-+ .|.-+.....
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHH
Confidence 999999999999988765 11222 223344556666778999999999999876 34433 3433432333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHh--------
Q 010236 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQ-------- 369 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~-------- 369 (514)
..+...+|..++++.... ...++..++.+...+.+...+..|.+-|+.+.+.-. .+|..+.-.|.+.|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 457788999999988764 233555555566678888888888887776665322 2466666666665543
Q ss_pred ----cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010236 370 ----YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (514)
Q Consensus 370 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (514)
.+..++|+++|.++.+..+ .|...-+.+.-.++..|++..|..+|.+..+.. .-+..+|-.+.++|..+|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHH
Confidence 2346678889988887653 355666677778889999999999999998874 3355678899999999999999
Q ss_pred HHHHHHHHH-HCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 446 ALSVYHLMK-DIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 446 A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|+++|+... +.....+......|.+++.+.|.+.+|.+.+.....
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999865 445556788899999999999999999998888876
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3.6e-15 Score=133.10 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=156.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHH
Q 010236 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 377 (514)
..+|++++|.+.|++.....-.-....|+ +.-.+-..|++++|++.|-++... +..+..+...+...|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34678899999998887653222222222 233466788999999888776543 1235667777888888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 378 ECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
+++.+.... ++.|+.+.+.|...|-+.|+-..|.+.+-.--.. ++-|..+...|..-|....-++.|+..|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 998877654 4557888999999999999999888876554443 567888888888889988899999999998754
Q ss_pred CCcCHHHHHHHHHHHH-cCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010236 458 ISPDLVTYSTLMKAFI-RAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 458 ~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
+.|+..-|..++..|. +.|++++|.++++...+. ++.|..++..|++.+-.+|
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 6789999998876654 689999999999988753 7778888998888776554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=2e-12 Score=125.50 Aligned_cols=367 Identities=14% Similarity=0.116 Sum_probs=238.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
.+.+.-.|++++|.+++.+..+.. +.+...|..|...|-..|+.+++...+-.+-... +.|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 334444599999999999998875 6678899999999999999999998776665544 56778999999999999999
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHccCChHHHHHH
Q 010236 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG----KVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~ll~~~~~~g~~~~a~~~ 239 (514)
+.|.-.|.+..+..+ ++...+---+..|-+.|+...|.+.|.++.....+.|..-+. .+++.+...++.+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998765 455555566778899999999999999998875433333333 345567777777889988
Q ss_pred HHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH--------------------------H
Q 010236 240 VEEIREM-GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN--------------------------S 292 (514)
Q Consensus 240 ~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--------------------------~ 292 (514)
++..... +-..+...++.++..|.+...++.|......+......+|..-|. .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8887762 223456678888899999999999998888877633333332221 1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 010236 293 LIRWHCKAGDVAKALELFTQMQEQG--FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (514)
+.-++......+....+.....+.. +.-+...|.-+..++.+.|++..|..++..+.......+..+|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 1122233333333333333333333 22234455666666666666666666666666655444556666666666666
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCCCCHHHHHHHHHHHHHcCC
Q 010236 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP--------EGIEPNLVMLNVLINAFGVAGK 442 (514)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~p~~~~~~~li~~~~~~g~ 442 (514)
|..++|.+.|+.+....+ -+...-..|...+.+.|+.++|.+.+..+.. .+..|+....-.....+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 666666666666665421 1233334455555666666666666666431 1233333334444455555566
Q ss_pred HHHHHHHHHHHH
Q 010236 443 YKEALSVYHLMK 454 (514)
Q Consensus 443 ~~~A~~~~~~m~ 454 (514)
.++=+.+-..|.
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=3.4e-13 Score=120.72 Aligned_cols=218 Identities=16% Similarity=0.175 Sum_probs=169.6
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010236 262 FGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 341 (514)
....|++++|.+.|++.....-.-....|| +.-.+-..|+.++|++.|-++... +..+..+...+...|....+...|
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 345789999999999998752221122232 223467789999999999988753 334677788888999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 342 KKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
++++.+.... ++.++.+.+-|.+.|-+.|+-..|.+.+-+--+. ++.+..+...|...|....-+++++.+|++..-
T Consensus 578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 9999887665 5778999999999999999999998877654433 345777888888889999999999999998765
Q ss_pred CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010236 422 GIEPNLVMLNVLINAF-GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
+.|+..-|..|+..| .+.|+++.|+++++..... ++-|...+..|++.+...|- .++.++-++
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~k 718 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADK 718 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHH
Confidence 589999999988655 5689999999999998764 55688899999998888774 344444333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=5.3e-12 Score=122.59 Aligned_cols=360 Identities=15% Similarity=0.122 Sum_probs=199.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
......+.+...|++++|.+++.++++.. +.+...|.+|...|-..|+.+++...+-......+ .|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 33344444445588888888888887765 55667788888888888888887776655554433 45577777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCCHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY----NSIIDTFGKYGELV 269 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~ 269 (514)
+.|.+++|.-+|.+.++.... +...+-.-...|-+.|+...|..-|.++.....+.|..-+ ...++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888887776322 3333334455677778888888888877776432232222 22345556666667
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010236 270 EALEVFEKMQQES-IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 270 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-+..- .+. + ......
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~~-~-----~~~~~~ 367 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ERR-R-----EEPNAL 367 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hhc-c-----cccccc
Confidence 7777777665521 1224445667777777777777777777766653333333222000 000 0 000000
Q ss_pred H--hcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 010236 349 K--DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL--QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424 (514)
Q Consensus 349 ~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 424 (514)
. ..+..++..++ .++-++.+....+....+...+...++ .-+...|.-+..+|...|.+.+|+.+|..+.....-
T Consensus 368 ~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 368 CEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred ccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 0 00111222221 112222333333333334444444432 223445555666666666666666666666554323
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010236 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
-+...|-.+..+|...|.+++|.+.|+......+. +...-.+|...+.+.|+.++|.+.++.+
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 34455666666666666666666666666553211 3334445555566666666666666664
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.1e-12 Score=125.80 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHH
Q 010236 356 IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM-FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL--VMLNV 432 (514)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ 432 (514)
+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++...+.. +-|. ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 455566666666666666666666666665432211111 1111112223456677777777766542 2233 45567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778888888888888888854443456777777788888888888888888887754
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.4e-12 Score=124.43 Aligned_cols=290 Identities=12% Similarity=0.071 Sum_probs=140.0
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHccCChHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG--KVIGLYRDNGMWKKAV 237 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~ 237 (514)
.|+++.|++.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57777777666665543211 1222323333445666777777777666554 33332222 2244555666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010236 238 GIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
+.++++.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ---------------------- 229 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 6666666554 334555556666666666666666666666554332111 1110000
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHH
Q 010236 318 FYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCI 397 (514)
Q Consensus 318 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 397 (514)
.+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+....
T Consensus 230 -----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~-- 299 (398)
T PRK10747 230 -----QAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV-- 299 (398)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--
Confidence 01111111111222233333333333221 1234444455555555555555555555555442 2232111
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+.+.+ ..|+..++..+..++.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCC
Confidence 1222233455555665555555442 23344455555666666666666666666554 23555555556666666666
Q ss_pred cchHHHHHHHHH
Q 010236 478 FHKVPEIYKQME 489 (514)
Q Consensus 478 ~~~a~~~~~~m~ 489 (514)
.++|.+++++-.
T Consensus 377 ~~~A~~~~~~~l 388 (398)
T PRK10747 377 PEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=9.9e-11 Score=109.87 Aligned_cols=398 Identities=11% Similarity=0.069 Sum_probs=237.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCChHhHHHHHHH--
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMV----CFGFNPKLRFYNILLRG-- 156 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~~~~~~~~~li~~-- 156 (514)
|.-+|++..-|+.|..++++..+. ++.+...|.+....=-.+|+.+....+.++-. ..|+..+...|-.=...
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 445666667777777777777654 46666777666666566666666666555432 24444444444433333
Q ss_pred -----------------------------------HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010236 157 -----------------------------------FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 157 -----------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
|.+.+.++-|..+|....+.-+ .+...|......--..|..++-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHH
Confidence 4444444555555554444321 2334455444444445555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
..+|++....-. -....|......+...|+...|..++....+.+ +.+...|-+-+........++.|..+|.+....
T Consensus 570 ~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 556665555422 134444445555666677777777777777664 336666777777777777777777777776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 010236 282 SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYA 361 (514)
Q Consensus 282 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (514)
.|+...|..-+..---.++.++|++++++..+. ++--...|..+.+.+-+.++.+.|...|..-.+. ++..+..|-
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl 723 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL 723 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence 455556655555555567777777777776663 2223455666666667777777777766655544 344556677
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C---------------
Q 010236 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE----G--------------- 422 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--------------- 422 (514)
.|...-.+.|.+-.|..++++..-+++ -+...|-..|+.-.+.|+.+.|..+..+..+. |
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 777777777777778888877776654 35667777777777788877777766555432 1
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 423 ----------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 423 ----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..-|....-.+...|....+++.|.+.|.+..+.+.. +-.+|.-+...+.++|.-+.-.+++++...
T Consensus 803 kTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 803 KTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 0122223344445555556666666666666654332 344566666666666666666666666654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.9e-11 Score=108.91 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=268.5
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcC--hHhHH
Q 010236 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN--QETYE 186 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 186 (514)
..|.+.+-.....+-+.|....|+..|......- + ..|.+.+....-..+.+.+.. ... +...| ...--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHH
Confidence 4455555555556667788888888888776431 2 334443333322233333222 221 11111 11112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhc
Q 010236 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGK 264 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~ 264 (514)
.+..++......++++.-.......|++-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 34455666678888888888888888887776666677777888999999999999998732 1256677766533222
Q ss_pred cCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010236 265 YGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 265 ~~~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
+.++. -|..++ .+- .. -+.|...+.+-|+-.++.++|...|+...+.+.. ....++.+..-|....+...|..
T Consensus 312 ~skLs~LA~~v~-~id--Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NID--KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHH-Hhc--cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 122222 111 12 3456777888888899999999999999885322 34567777788999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 010236 344 NFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI 423 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 423 (514)
-++.+++.+ +.|-..|-.|.++|.-.+...-|+-.|++...-. +.|...|.+|..+|.+.++.++|++.|......|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999876 6788899999999999999999999999988753 3478899999999999999999999999998876
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GIS-PD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
..+...+..|...|-+.++.++|.+.|++-.+. |.. |. .....-|..-+.+.+++++|..+...... | .+..
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~e~ 540 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ETEC 540 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-CchH
Confidence 446688999999999999999999999887642 322 21 12222355667789999999987777665 3 7777
Q ss_pred HHHHHHHHHHHHhh
Q 010236 498 KARQILQSALVVLE 511 (514)
Q Consensus 498 ~~~~~l~~a~~~~~ 511 (514)
.--+.|++.+.+..
T Consensus 541 eeak~LlReir~~~ 554 (559)
T KOG1155|consen 541 EEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHhc
Confidence 77788888877643
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.5e-12 Score=123.46 Aligned_cols=290 Identities=12% Similarity=0.047 Sum_probs=137.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010236 124 SVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+.+.|.+.+++..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555555444432 22 12222333444445555555555555443321111122223344455555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCCHHHHHHHHHHHH
Q 010236 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTF---GKYGELVEALEVFEKMQ 279 (514)
Q Consensus 203 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~~~~~~A~~~~~~m~ 279 (514)
..++.+.+..+. ++..+..+...+...|++++|.+.+..+.+.+..++......-..++ ...+..++..+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 555555554322 34444455555555555555555555555544321111101001111 11111121222222222
Q ss_pred HCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 010236 280 QES---IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKI--F-ITIISCLGELGKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 280 ~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (514)
+.. .+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 221 11255556666666666666666666666666532 22221 0 111111223355566666666655542
Q ss_pred CCcH--HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 354 GKIG--AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 354 ~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+.++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334 45556666667777777777777743333345666666667777777777777777776643
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=3.5e-12 Score=121.72 Aligned_cols=281 Identities=9% Similarity=0.084 Sum_probs=165.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhH--HHHHHHHHhcCCHHHH
Q 010236 125 VGRTLEADAIFQEMVCFGFNPKLRF-YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY--EILLDYHVNAGRLDDT 201 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A 201 (514)
.|+++.|.+......+.. ++... |........+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 22233 3333455578999999999999998753 444322 2446788999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhccCCHHHHHHH
Q 010236 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQ-------IYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~A~~~ 274 (514)
...++++.+.... ++.....+...|.+.|+|++|.+++..+.+.+..++.. +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999988633 67888889999999999999999999999886542221 222223323333344444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 010236 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG 354 (514)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (514)
++.+.+. .+.+......+...+...|+.++|.+.+++..+. .|++... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 4444332 1224444555555555555555555555555442 2333111 1112222344444444444444332 2
Q ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 010236 355 KIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (514)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 434 (514)
.+.. .+..+...|.+.+++++|.+.|+...+. .|+...+..+.
T Consensus 326 ~~~~-----------------------------------l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 326 DTPL-----------------------------------LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred CCHH-----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 3333 3444555555555555555555555543 45555555555
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 010236 435 NAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m 453 (514)
.++.+.|+.++|.+++++.
T Consensus 369 ~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 369 DALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555544
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2e-10 Score=103.89 Aligned_cols=410 Identities=11% Similarity=0.090 Sum_probs=261.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILLRG 156 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~ 156 (514)
..|-.-...=..++++..|..+|++.+.-. ..+...|...+..=.++.++..|..+++..+..- |-+ ..|---+.+
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHH
Confidence 344444444455678888888888888765 4566677777777778888888888888877642 322 234444444
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
=-..|++..|.++|++..+ ..|+...|++.|+.-.+-+.++.|..+|++..-. .|+..+|....+.-.+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 4556788888888887766 4578888888888888888888888888877654 47777777777777777777777
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---------------------------------
Q 010236 237 VGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE--------------------------------- 281 (514)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------------------------- 281 (514)
..+|+..++.-- ..+...+++....=.++..++.|.-+|.-..+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 777776654310 011222333322222333334443333332221
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCCHHHH
Q 010236 282 ----------SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-------KIFITIISCL---GELGKWDVI 341 (514)
Q Consensus 282 ----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~---~~~~~~~~a 341 (514)
.-+-|-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|..+=-+| ....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 01224556666666666667777777777777764 44421 1221111111 245677777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHH----hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010236 342 KKNFENMKDRGHGKIGAIYAILVDIYG----QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQL 417 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 417 (514)
.+++...++. ++....++.-+--+|+ +..++..|.+++.... |..|-..+|...|..-.+.++++...+++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777763 3444555554444444 4567777777777766 5567777788777777788888888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 010236 418 MEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 418 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (514)
..+.+ +-|..+|......=...|+.+.|..+|+.+.+... .-....|.+.|+--...|.+++|..+++++.+. .+.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 88775 45777888777777788888888888888775421 112345666666667788888888888888873 344
Q ss_pred HHHHH
Q 010236 497 RKARQ 501 (514)
Q Consensus 497 ~~~~~ 501 (514)
...|-
T Consensus 540 ~kvWi 544 (677)
T KOG1915|consen 540 VKVWI 544 (677)
T ss_pred chHHH
Confidence 43443
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=3.6e-15 Score=135.96 Aligned_cols=224 Identities=18% Similarity=0.221 Sum_probs=64.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 337 (514)
+.......++.+.|.+.++++...+.. +...+..++.. ...+++++|.+++....+. .+++..+...+..+.+.++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhH
Confidence 333333444444444444444433211 22233333333 3444444444444443332 1233334444444444445
Q ss_pred HHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010236 338 WDVIKKNFENMKDRG-HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 338 ~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
++.+..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++..+..+ .|......++..+...|+.+++.+++.
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 555444444443211 123344444455555555555555555555554421 134444555555555555555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010236 417 LMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 417 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
...+.. +.|...+..+..+|...|+.++|+..|++..+.... |+.....+..++...|+.++|.++.++.
T Consensus 205 ~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 205 RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---------------
T ss_pred HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 444432 333344555555555555666666555555543221 4555555555555566655555555544
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=5.4e-15 Score=134.80 Aligned_cols=261 Identities=15% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALG-FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
.+...+.+.|++++|++++++..... .+.|..-|..+.......++++.|++.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34667778888888888886544432 13344455555566667788888888888887765 3355566666666 677
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHH
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877665532 455667777788888888888888888876533 234666777777788888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010236 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 319 (514)
+++.++.. +.|....+.++..+...|+.+++.++++...+.. +.|...|..+..+|...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887764 3356777778888888888888777777766542 2344566777778888888888888888877642 3
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010236 320 PDPKIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 320 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
.|+.+...+..++...|+.++|.++..++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 367777777778888888888877766654
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.2e-11 Score=112.16 Aligned_cols=387 Identities=13% Similarity=0.069 Sum_probs=245.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~ 156 (514)
.+.+..+.|.++|++++|++.|.+.++. .|+ +.-|.....+|...|+|++..+--...++.. |+ +-.+.--.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 4566677889999999999999999987 677 7778889999999999999999888888753 44 3355555666
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHH--------HHHH-cC--CCCChhhHHHHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIIN--------EMRS-KG--FQLNSFVYGKVIG 225 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~-~g--~~~~~~~~~~ll~ 225 (514)
+-..|++++|+.-..- ..+..++....-.--+.+++. +-.. .+ +-|+.....+...
T Consensus 193 ~E~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred HHhhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 7777777777542222 112222211111111111111 1111 11 1222222222222
Q ss_pred HHHc----------------------------cCChHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHhcc
Q 010236 226 LYRD----------------------------NGMWKKAVGIVEEIREM---GLSLD---------RQIYNSIIDTFGKY 265 (514)
Q Consensus 226 ~~~~----------------------------~g~~~~a~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~ 265 (514)
.+.. ...+..|.+.+.+-... ....+ ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 2210 00122222222211110 00111 11222222234456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010236 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
|+.-.|..-|+........++. .|--+...|.+..+.++....|.+....+. -++.+|..-.+...-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 7888888888888776433222 266777788888888888888888877542 25666777777777778888888888
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010236 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
++.+... +.+...|-.+.-+..+.+.+++++..|++.+++ ++..+..|+.....+..+++++.|.+.|+...+. .|
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~ 493 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EP 493 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cc
Confidence 8888775 445666666666667788889999999988876 3345677888888888889999999999887764 33
Q ss_pred C-------HHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 426 N-------LVML--NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 426 ~-------~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+ ...+ -.++..- -.+++..|.+++++..+.+.+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 1111 1222222 238888899999888876544 455788888888889999999999887764
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4.2e-10 Score=101.82 Aligned_cols=386 Identities=10% Similarity=0.085 Sum_probs=272.5
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..+...|-.-+..=.++..+..|..++++.... -|-+ ..|-..+..=-..|+...|.++|+.-.+. .|+...|.+
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~s 179 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLS 179 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHH
Confidence 345667777777778888888888888887764 2332 23444444445668888888888887765 688888888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCChhhHHHHHHHHHcc
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK-GF-QLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~~~~~~~~~ll~~~~~~ 230 (514)
.|+.=.+.+.++.|..++++..- +.|++.+|.-....-.++|....|..+|....+. |- ..+...+.+....-...
T Consensus 180 fI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~q 257 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQ 257 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888775 3478888888888888888888888888776543 10 00112222222222233
Q ss_pred CChHHHHHHHHHHHHc-------------------------------------------CCCCCHHHHHHHHHHHhccCC
Q 010236 231 GMWKKAVGIVEEIREM-------------------------------------------GLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~-------------------------------------------~~~~~~~~~~~li~~~~~~~~ 267 (514)
..++.|.-+|+-.++. .-+.|-.+|--.++.-...|+
T Consensus 258 kE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 258 KEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC
Confidence 3444444444433221 113455667777777788899
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHH----H-H---HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 010236 268 LVEALEVFEKMQQESIRPDI--VTWNSLI----R-W---HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLG---- 333 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~--~~~~~li----~-~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 333 (514)
.+...++|++.... ++|-. ..|.--| + + =....+++.+.++|+...+. ++-...||..+--.|+
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999999875 44422 1222222 1 1 13467899999999999883 4555677776655554
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010236 334 ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVK 413 (514)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 413 (514)
+..++..|.+++...+. ..|...++...|..-.+.+.++.+..++++..+-++ -+..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHH
Confidence 56789999999988764 467888999999999999999999999999998763 466788888877788999999999
Q ss_pred HHHHhhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010236 414 VLQLMEPEG-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 414 ~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
+|....... +......|.+.|+.=...|.++.|..+++++.+.. +...+|.++..--
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe 550 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFE 550 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHh
Confidence 999988752 22234567777777788999999999999998753 3444676665543
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=6.7e-10 Score=104.45 Aligned_cols=363 Identities=12% Similarity=0.064 Sum_probs=182.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
+|+.-...|.+.+.++-|..+|....+-- +.+...|......=-..|..++...+|+++...- +-....|-.....+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 34444444444444444444444444321 2233344444433334444444444554444431 223333444444444
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
..|++..|..++....+... .+...|...+..-..+..++.|..+|.+.... .|+...|..-+..-.-.+..++|++
T Consensus 596 ~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 44555555555555444332 23444555555555555555555555544432 3344444444444444445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010236 239 IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 318 (514)
++++.++. ++.-...|-.+...+-+.++++.|.+.|..=.+. ++-.+..|..+...=-+.|.+-+|..+++...-.+.
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 55554443 1222233444444444444444444444332221 112233344444444444455555555555444322
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010236 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
-+...|...|..-.+.|..+.|..++.+.++. ++.+...|..-|.+..+.++-..+.+.+++- .-|+.....+
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllai 823 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAI 823 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHH
Confidence 24444555555555555555555555444443 2334444444444444444433333333221 2344555666
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
...+-....++.|.+.|.+..+.+ +.+..+|..+...+.++|.-++-.+++......
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 677777888999999999998874 445678988999999999999999999988764
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=1.4e-10 Score=102.93 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=163.6
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
.|++..|++...+-.+.+..| ...|..-..+.-+.|+.+.+-.++.+..+..-.++.....+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554322 3344455555556666666666666665543333444445555566666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 010236 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI-------VTWNSLIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 312 (514)
.+++.+.+ +.+..+......+|.+.|++.+...+..++.+.+.--+. .+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666554 345555666666666666666666666666665543332 3455555555555555554455555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 010236 313 MQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (514)
Q Consensus 313 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 392 (514)
.... .+-++..-.+++.-+.++|+.++|.++..+..+.+..+... ..-...+-++.+.-++..+.-.... +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 4432 34455556666666777777777777777776665544411 1112234445444444444433321 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..+|.+++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55666666677777777777777765554 5667777777777777777777777666654
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=5.2e-11 Score=102.51 Aligned_cols=289 Identities=12% Similarity=0.083 Sum_probs=198.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHH
Q 010236 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD---RQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A 271 (514)
..+.++|.++|-+|.+.... +..+..+|.+.|.+.|..+.|+.+++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46677888888888775211 334445677788888888888888888776421111 22344566678888888889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHH
Q 010236 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP----KIFITIISCLGELGKWDVIKKNFEN 347 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (514)
.++|..+.+.+. .-......|+..|-+..+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998888877532 23456677888888888999999888888776544432 2355555666667788888888888
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 010236 348 MKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL 427 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 427 (514)
..+.+ +..+.+--.+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.. ++.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 88765 334455556777888889999999999998888765556677788888999999999998888887763 334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC---CCcchHHHHHHHHHh
Q 010236 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA---KKFHKVPEIYKQMES 490 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 490 (514)
..-..+...-....-.+.|...+.+-.. -+|+...+..++..-... |...+-..+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3444455544445555666655554443 257888888888776543 334555566666654
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=7.9e-11 Score=104.52 Aligned_cols=287 Identities=14% Similarity=0.112 Sum_probs=193.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHH
Q 010236 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
.|++..|..+..+-.+.+- -....|..-.++.-..|+.+.+-+.+.+..+....++...+-+........|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4677777777776666552 223444455555566677777777777776653345555666666667777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHH
Q 010236 205 INEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR-------QIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 205 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
.+++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666433 5566666677777777777777777777777654443 3566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH
Q 010236 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (514)
...+ .+.++..-..++.-+.+.|+.++|.++..+..+.+..|. ....-.+.+.++...-.+..+.-.+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 6543 233455556677778888888888888888877766555 122234556667776666666665542 4455
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+.++|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77888888888888888888888876654 678888888888888888888888888776543
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.5e-11 Score=101.54 Aligned_cols=277 Identities=15% Similarity=0.106 Sum_probs=158.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------HhHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL------RFYNIL 153 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~------~~~~~l 153 (514)
|-.=++.+. +.+.++|+++|-+|.+.. +-+..+..++.+.|-+.|..+.|+.+++.+.++ ||. ...-.|
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 333344333 478899999999998753 334556677888888999999999999888763 442 233445
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHc
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRD 229 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~ 229 (514)
..-|...|-+|.|+++|..+.+.+. --......|+..|-+..+|++|+++-+++.+.+..+... .|..+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 6667777888888888877776432 234456677777777777877777777777664433221 22333333444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010236 230 NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
..+.+.|..++.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 556666666666666543 2223333344455566666666666666666553222233445555666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 010236 310 FTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 310 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (514)
+..+.+....++ ....+-.......-.+.|...+.+-++. .|+...+..+++.-
T Consensus 272 L~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 272 LRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 666555322222 2222222222333344444444333333 34455555555543
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.7e-10 Score=100.34 Aligned_cols=361 Identities=12% Similarity=0.089 Sum_probs=243.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH--HHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY--NIL 153 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~l 153 (514)
|+..+-.....+.+.|..+.|+..|......- +-.=..|..|...+ .+.+ ....... |.+.|.... --+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e----~~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE----ILSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----HHHHHHh-cCcccchHHHHHHH
Confidence 44333333444556777888888887776531 22222333333322 2222 2222222 212221111 123
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHccC
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g 231 (514)
..++-.....+++.+-.+...+.|.+-+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 4555666688888888888888888555544455555666788999999999999887321 155667666533 322
Q ss_pred ChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010236 232 MWKKAVGIVEE-IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF 310 (514)
Q Consensus 232 ~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 310 (514)
+-..+ .+.+ ..+.+ +--+.|+..+.+-|+-.++.++|...|++..+.+. .....|+.|.+-|....+...|++-+
T Consensus 312 ~skLs--~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSKLS--YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHHHH--HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22211 1111 11111 23455777788888889999999999999987643 24567999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC
Q 010236 311 TQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP 390 (514)
Q Consensus 311 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 390 (514)
+...+-. +.|-..|-.+.++|.-.+.+.-|+-.|++..+.. +.|...|.+|.++|.+.++.++|+..|.....-+- .
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence 9998853 3477888999999999999999999999998875 67899999999999999999999999999887653 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPE----GIEPN-L-VMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
+...+..|...|-+.++.++|...|++..+. |...+ . ..---|..-+.+.+++++|-.......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 6678999999999999999999988876652 32222 1 122234555667788888776555443
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=9.4e-12 Score=117.21 Aligned_cols=281 Identities=13% Similarity=0.065 Sum_probs=180.1
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CcChHhHHHHHHHHHhcCCHHHHHHH
Q 010236 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI--CRNQETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
+.++|...|..+...- .....+...+..+|...+++++|.++|+.+.+... ..+...|.+.+..+-+.- ++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3567777777754432 23335566677777777777777777777766431 135566776666543321 1222
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010236 205 I-NEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 205 ~-~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
+ +++.+. -+-.+.+|-.+.++|.-+++.+.|++.|++.++.+ +....+|+.+.+-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 2 122222 12356777777777777888888888887777653 226677777777777777788888888777643
Q ss_pred CCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHH
Q 010236 284 RPDIVT---WNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIY 360 (514)
Q Consensus 284 ~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (514)
|... |.-+...|.+.++++.|+-.|++..+.+. -+.+....+...+.+.|+.|+|+++++++...+.. ++..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 3333 44455667788888888888877776432 24555666667777778888888888887766533 33333
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
-..+..+...+++++|...++++++. ++-+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33445556677888888888887764 2224456667777788888888888777777665
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=6.7e-12 Score=118.20 Aligned_cols=282 Identities=12% Similarity=0.093 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHH
Q 010236 197 RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 197 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
+..+|+.+|...... +.-.......+.++|...+++++|.++|+.+.+... .-+..+|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777777775444 222346666677788888888888888887776421 12455666655443221 12222
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010236 275 FE-KMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 275 ~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
+- .+.+. -+-.+.+|..+.++|.-.++.+.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 21 12221 1225678888888888888888888888887763 44 56777777777777778888888888776653
Q ss_pred CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 010236 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNV 432 (514)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 432 (514)
+.+-.+|-.+.-.|.+.++++.|+-.|++..+-++ .+.+....+...+.+.|+.++|+.+++++.... +-|+..--.
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 23344455567778888888888888888876543 245556666677778888888888888877654 334444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 433 LINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+..+...+++++|++.++++++. .| +...+..+...|.+.|+.+.|+.-|--|.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566677778888888888888774 33 4556777778888888888888777777663
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=2e-11 Score=118.22 Aligned_cols=243 Identities=14% Similarity=0.156 Sum_probs=156.9
Q ss_pred CCCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 010236 71 SGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (514)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 150 (514)
.|..|+.++|.++|..||..|+.+.|- +|..|.-+..+.+...++.++.+....++.+.+. .|...+|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDty 86 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTY 86 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHH
Confidence 478899999999999999999999998 9999988887888889999999999988888776 5788899
Q ss_pred HHHHHHHHhcCChhh---HHHHHHHHH----HcCCCcChHhH---------------HHHHHHHHhcCCHHHHHHHHHHH
Q 010236 151 NILLRGFLKKGLLGL---GSRLLMVME----DMGICRNQETY---------------EILLDYHVNAGRLDDTWLIINEM 208 (514)
Q Consensus 151 ~~li~~~~~~g~~~~---A~~~~~~~~----~~~~~~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m 208 (514)
..|..+|...||+.. ..+.++.+. ..|+. ....| ...+....-.|-++.+++++..+
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999755 222222221 11221 11111 11122222333444444444333
Q ss_pred HHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 010236 209 RSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV 288 (514)
Q Consensus 209 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 288 (514)
...... . ++...++-+.... ....++........-.++..+|..+++.-.-.|+++.|..++.+|.++|.+-+..
T Consensus 166 Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 166 PVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred Cccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 211100 0 1111233333222 2222333322222114778888888888888888888888888888888777776
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 334 (514)
-|-.++-+ .++...+..++.-|.+.|+.|+..|+.-.+..+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66666655 67777777888888888888888887766665555
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.2e-10 Score=101.98 Aligned_cols=289 Identities=12% Similarity=0.049 Sum_probs=226.6
Q ss_pred CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010236 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 178 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
...+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+. .+....+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34566666777778888999999999999988763 335555555566888889888887777788776 3567888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 337 (514)
+.--|...|+..+|.+.|.+...-... =...|-....+|+-.|..|+|+..+...-+. ++-...-+.-+.--|.+.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 998898899999999999987654211 2357888999999999999999999887653 11122223334455788899
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCHHHH
Q 010236 338 WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE----G--LQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
...|.+.|.+..... +.|+.+.+.+.-...+.+.+.+|..+|+..... + ..-+..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999998775 677888888888888889999999999987621 1 112566788999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 010236 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (514)
+..+++..... +.+..++.++.-.|...|+++.|.+.|.+..- +.||..+-..++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99999988763 66889999999999999999999999998875 67888777777765543
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=1e-09 Score=95.84 Aligned_cols=389 Identities=12% Similarity=0.087 Sum_probs=217.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhh
Q 010236 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (514)
.+...|++++|+..+..+.+.. .++...+..+...+.-.|.+.+|..+-.... .+.-.-..+.....+.|+-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHH
Confidence 3445566666666666655543 3455555555555555566666665544431 222223334444455555555
Q ss_pred HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHccCChHHHHHHHHHHH
Q 010236 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI-GLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~ 244 (514)
-..+.+.+.+ ....-.+|.......-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.++++-..
T Consensus 140 ~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 140 ILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5554444443 2223334445445556678899999888765 33444444433 45677888888888888777
Q ss_pred HcCCCCCHHHHHHHHHHHhcc--CCH---------------------------------HHHHHHHHHHHHCCCCCCHHH
Q 010236 245 EMGLSLDRQIYNSIIDTFGKY--GEL---------------------------------VEALEVFEKMQQESIRPDIVT 289 (514)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~--~~~---------------------------------~~A~~~~~~m~~~~~~p~~~~ 289 (514)
+. ++.+....|.......+. |+. +.|++++-.+.+. -| ..
T Consensus 213 ~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EA 287 (557)
T KOG3785|consen 213 RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EA 287 (557)
T ss_pred Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hh
Confidence 65 344445555443332221 111 1112221111110 11 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHhcCCCCcHH-HHHHH
Q 010236 290 WNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC-----LGELGKWDVIKKNFENMKDRGHGKIGA-IYAIL 363 (514)
Q Consensus 290 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 363 (514)
--.++-.|.+.+++.+|..+.+++.- ..|-......+..+ .........|.+.|...-+.+..-|.. --.++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 23345567788899999888877642 23333333322222 112223455666666554444333322 12344
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHHHcCC
Q 010236 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGK 442 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~ 442 (514)
...+.-..++++.+..++.+...-...|...+ .+..+++..|++.+|.++|-......++ |..+| ..|.++|.+++.
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCC
Confidence 44555566788888888888776554444444 4678888899999999999887765444 44555 445578889999
Q ss_pred HHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHH
Q 010236 443 YKEALSVYHLMKDIGISPDL-VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (514)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 501 (514)
++-|++++-++.. +-+. .....+...|.+.+.+=-|.+.|+.+.. ..|++..|.
T Consensus 444 P~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 444 PQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred chHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 9999877655432 2222 2344555677788887777777777765 566655554
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=1.5e-10 Score=112.25 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=82.1
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010236 98 ALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
.++-.+...|+.||.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34567888999999999999999999999999998 9999988888888999999999999999988876
Q ss_pred CCcChHhHHHHHHHHHhcCCHHH
Q 010236 178 ICRNQETYEILLDYHVNAGRLDD 200 (514)
Q Consensus 178 ~~~~~~~~~~li~~~~~~g~~~~ 200 (514)
.|...+|..|..+|...||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 3889999999999999999765
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=2.4e-10 Score=114.05 Aligned_cols=268 Identities=9% Similarity=-0.030 Sum_probs=185.6
Q ss_pred CCCHhhHHHHHHHHH-----hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh---------cCChhhHHHHHHHHH
Q 010236 109 HPSSISYASLIEALA-----SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK---------KGLLGLGSRLLMVME 174 (514)
Q Consensus 109 ~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~ 174 (514)
..+...|...+++.. ..+++++|.+.|++..+.. +.+...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455666666655532 2356899999999998864 3345566666655542 244789999999998
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 010236 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
+.++ .+...+..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.+.. +...
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8754 46778888888889999999999999999887532 5667888888999999999999999999987532 3333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 010236 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKI-FITIISCLG 333 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~ 333 (514)
+..++..+...|++++|...+++......+-+...+..+..++...|++++|...+.++... .|+... ...+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 34445556678899999999999876532224555777788888999999999999887653 344333 344445566
Q ss_pred ccCCHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 010236 334 ELGKWDVIKKNFENMKDRGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 387 (514)
..| +.+...++.+.+... .+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 477776776655311 1111111 34445566777777666 7776654
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=2.8e-10 Score=101.00 Aligned_cols=199 Identities=13% Similarity=0.061 Sum_probs=124.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
....+..+...+.+.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567778888888899999999998887653 4456677778888888888888888888887764 345566677777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 234 (514)
.+...|++++|.+.+++..+.... .....+..+...+...|++++|...+.+....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 777788888888887777653211 12334555555566666666666666665554211 3344445555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010236 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (514)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 278 (514)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555544 1233344444444455555555555554444
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=1.8e-08 Score=95.12 Aligned_cols=389 Identities=17% Similarity=0.174 Sum_probs=262.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010236 87 CCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
+...|+-++|....+...... ..+.+.|..+.-.+-...++++|+..|..+...+ +.|...|.-+.-.-++.++++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 345689999999888877644 4577889988888888899999999999999876 66778888777777788888887
Q ss_pred HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHH------HHHHccCChHHHHHH
Q 010236 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG-FQLNSFVYGKVI------GLYRDNGMWKKAVGI 239 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll------~~~~~~g~~~~a~~~ 239 (514)
...-....+..+ .....|..+..++.-.|+...|..++++..+.. -.|+...+.... ....+.|..++|.+.
T Consensus 129 ~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 777766666433 456789999999999999999999999987764 245655554332 345577888888887
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHHHHCC
Q 010236 240 VEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC-KAGDVAKAL-ELFTQMQEQG 317 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~-~~~~~m~~~g 317 (514)
+..-... +......-..-.+.+.+.+++++|..++..+..+ .||...|...+..+. +-.+.-+++ .+|....+.
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~- 283 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK- 283 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-
Confidence 7765543 1112223344566788999999999999999987 477777666555444 344444444 666666543
Q ss_pred CCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH--------c--
Q 010236 318 FYPDPKIFIT-IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKL--------E-- 386 (514)
Q Consensus 318 ~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~-- 386 (514)
.|-...... =+.......-.+....++....+.|+++ ++..+...|-.-...+ +++++.. .
T Consensus 284 -y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~ 355 (700)
T KOG1156|consen 284 -YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGM 355 (700)
T ss_pred -CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccC
Confidence 111111111 1111112222344455666666777654 3333443333222111 2222211 1
Q ss_pred --------CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 387 --------GLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 387 --------~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.-+|....|+ .++..+-+.|+++.|...++...+. .|+. ..|-.=.+.+...|.+++|..++++.++
T Consensus 356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE 433 (700)
T ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 0145555554 4677888999999999999999876 5654 4566666888999999999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010236 456 IGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
.+. +|...-..-..-..++++.++|.++.....+.|.
T Consensus 434 lD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 434 LDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 654 3555444666777789999999999988888765
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.40 E-value=4.5e-10 Score=99.70 Aligned_cols=199 Identities=13% Similarity=0.046 Sum_probs=125.9
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 4556667777778888888888888777653 34456677777777778888888888877776543 345566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
+...|++++|.+.+++.......+ ....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542211 23344555556666666666666666666543 2234455566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666665554 22344445555555556666666666655554
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1e-08 Score=93.48 Aligned_cols=360 Identities=9% Similarity=0.048 Sum_probs=235.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
+....+-|.++|.+++|++.|.+.++. .|| ...|.....+|...|+|++..+.-.+..+.++ .-+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHH
Confidence 334556788999999999999999986 577 88899999999999999999988888877432 22446666667777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH--------HHHHHHHHHH-cC--CCCCHHHHHHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK--------AVGIVEEIRE-MG--LSLDRQIYNSIIDTF 262 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~--------a~~~~~~~~~-~~--~~~~~~~~~~li~~~ 262 (514)
..|++++|+.-.. ..+++..+....-.-. |..-.++-.+ .+ +-|+....++....+
T Consensus 195 ~lg~~~eal~D~t-------------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVT-------------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhh-------------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 8888888764222 2222222222211111 2222222222 11 123333322222221
Q ss_pred ---------------------------hc-cCCHHHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHHhcCC
Q 010236 263 ---------------------------GK-YGELVEALEVFEKMQQE-SIRP--D---------IVTWNSLIRWHCKAGD 302 (514)
Q Consensus 263 ---------------------------~~-~~~~~~A~~~~~~m~~~-~~~p--~---------~~~~~~li~~~~~~g~ 302 (514)
.. ...+..|...+.+-... ...+ + ..+...-..-+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 00 01233333333221110 0011 1 1111111122345688
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010236 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
.-.|..-|+..++....++ ..|..+..+|....+.++..+.|....+.+ +.++.+|..-.+++.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999988644333 237777778999999999999999999886 55677888888888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 010236 383 LKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--- 459 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--- 459 (514)
....+. -+...|-.+.-+..+.+.+++++..|++..+. ++.-+..|+.....+..+++++.|.+.|+..++....
T Consensus 420 ai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 987642 24455655666667888999999999999876 5667889999999999999999999999998864322
Q ss_pred ----cCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 460 ----PDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 460 ----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
+.+.+..+++..-.+ +++..|.+++++.++ +.|..
T Consensus 498 ~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkc 536 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPKC 536 (606)
T ss_pred ccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCchH
Confidence 112222333333333 889999999999987 56644
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=8.6e-13 Score=84.43 Aligned_cols=50 Identities=34% Similarity=0.562 Sum_probs=42.0
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS 124 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 124 (514)
||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-08 Score=94.87 Aligned_cols=275 Identities=13% Similarity=0.061 Sum_probs=177.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010236 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+-|...+++.+..++.+...+.. ++....+..-|..+.+.|+..+-..+=.++.+. .+....+|-++.--|...|+.+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 33444555666666666555542 344444444455556666555555555555544 2234566666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
+|.+.|.+....... =...|..+...++-.+..|+|...+..+.+.-.. ...-+-.+.--|.+.++++-|.+.|.+..
T Consensus 330 eARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777777766542111 1234556666666677777777666665543111 11112223334666777777888887776
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010236 385 LEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE--GIEP----NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458 (514)
Q Consensus 385 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 458 (514)
... +.|+..++-+.-.....+.+.+|..+|+..... .+.+ -..+++.|..+|.+.+++++|+..+++......
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 542 235666666666666678899999999877621 1111 234678999999999999999999999988754
Q ss_pred CcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010236 459 SPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 459 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
+ |..++.++.-.|...|+++.|.+.|.+..- +.||..+...++...
T Consensus 487 k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 487 K-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred C-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 4 899999999999999999999999999886 899886555555443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=1.2e-09 Score=109.03 Aligned_cols=252 Identities=12% Similarity=0.027 Sum_probs=182.7
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHV---------NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+++++|.+.|++..+..+ .+...|..+..++. ..+++++|...+++..+.... +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 346789999999988643 24556666655443 234589999999999987533 6778888888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 456778888999999999999999999999886432 22233344555777899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC-CCC
Q 010236 312 QMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-LQP 390 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 390 (514)
++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.. ..+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 98765322245556777788889999999999998876553 334556667777777777 47888777765531 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 010236 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG 422 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 422 (514)
....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22223 33445566777766666 7777653
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1e-07 Score=89.95 Aligned_cols=407 Identities=14% Similarity=0.213 Sum_probs=256.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL-GFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
..|-.-+..+.++|++......|+..+.. .+.-....|...+...-..+-++-+..+|++-++. ++..-+--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 46777788888999999999999987654 22233557888888888899999999999998863 33446677888
Q ss_pred HHhcCChhhHHHHHHHHHHcC------CCcChHhHHHHHHHHHhcCCHHHH---HHHHHHHHHcCCCCC--hhhHHHHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMG------ICRNQETYEILLDYHVNAGRLDDT---WLIINEMRSKGFQLN--SFVYGKVIG 225 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~g~~~~--~~~~~~ll~ 225 (514)
+++.+++++|.+.+....... .+.+-..|..+-+..+++.+.-.. ..+++.+... -+| ...|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 889999999999988876431 234556777777777666544332 2334444332 233 356888999
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------C------CHHHHHHHHHHHHHCC-
Q 010236 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY----------------G------ELVEALEVFEKMQQES- 282 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~------~~~~A~~~~~~m~~~~- 282 (514)
-|.+.|.+++|..+|++.+..- ..+.-|..+.++|+.- + +++-.+.-|+.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999988752 3344444444444321 1 2333444455544331
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHH
Q 010236 283 ----------IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD------PKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 283 ----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
-+.++..|..-+.. ..|+..+-...|.+.... +.|. ...+..+...|...|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 01234444443332 346677777888887763 3332 3567788888999999999999999
Q ss_pred HHHhcCCCCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHhcC
Q 010236 347 NMKDRGHGKI---GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-----------------SGSMFCILANAYAQQG 406 (514)
Q Consensus 347 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g 406 (514)
+..+...+.- ..+|..-.++-.+..+++.|.++.+......-.| +...|...++.--..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9887654332 4456666666777888888888888765322111 2345555666666667
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHc---CCCcchHH
Q 010236 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDL-VTYSTLMKAFIR---AKKFHKVP 482 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~ 482 (514)
-++....+++.+.+..+. +....-.....+-.+.-++++.+++++-+..=.-|++ ..|+..+..+.+ .-..+.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 777777888877765432 2222222222334445566666666654443223333 255555554432 22456677
Q ss_pred HHHHHHHhCCCCCCH
Q 010236 483 EIYKQMESSGCTPDR 497 (514)
Q Consensus 483 ~~~~~m~~~g~~p~~ 497 (514)
.+|++..+ |++|+.
T Consensus 571 dLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 571 DLFEQALD-GCPPEH 584 (835)
T ss_pred HHHHHHHh-cCCHHH
Confidence 77777776 555543
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=2.5e-10 Score=98.39 Aligned_cols=238 Identities=11% Similarity=0.032 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF-ITII 329 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll 329 (514)
|..--+.+...|.+.|.+.+|.+.|+.-... .|-+.||..|-..|.+..++..|+.++.+-.+. .|-.+|| .-..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3444467889999999999999999988776 466778889999999999999999999998874 4545554 4566
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 010236 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (514)
..+...++.+++.++++...+.. +.++....++...|.-.++.+-|...++++...|+. ++..|+.+.-+|...++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 77888999999999999999875 567777888888899999999999999999999974 7788998888999999999
Q ss_pred HHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010236 410 QTVKVLQLMEPEGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
-++.-|++....--.|+ ...|..+.......|++.-|.+.|+.....+.. +...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999988876543444 357888888889999999999999998876543 677899998888999999999999998
Q ss_pred HHhCCCCCCH
Q 010236 488 MESSGCTPDR 497 (514)
Q Consensus 488 m~~~g~~p~~ 497 (514)
..+ +.|+.
T Consensus 455 A~s--~~P~m 462 (478)
T KOG1129|consen 455 AKS--VMPDM 462 (478)
T ss_pred hhh--hCccc
Confidence 876 55654
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=9.5e-08 Score=83.76 Aligned_cols=370 Identities=10% Similarity=0.031 Sum_probs=226.0
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
...++...|-.|...+.-.|.+.+|..+-.+..+ ++-.-..+...-.+.++-++-..+.+.+.. ...---
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqL 155 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQL 155 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHH
Confidence 3456667777777777778999999887766442 334444556666678887777777666643 223334
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL-DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD- 229 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~- 229 (514)
+|.+.....-.+.+|++++++....+ |+-...|..+ -+|.+..-++-+.++++-..+. ++-++...|.......+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRL 232 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhh
Confidence 45555555567899999999998754 4444555444 4567788888888888887765 22234444444332222
Q ss_pred -cCChHHHH--H----------HHHHHHHcCC------------CCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 230 -NGMWKKAV--G----------IVEEIREMGL------------SLD-----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 230 -~g~~~~a~--~----------~~~~~~~~~~------------~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.|+..+.. + ..+.+.+.++ -|. +..--.|+--|.+.+++.+|..+..++.
T Consensus 233 ~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~ 312 (557)
T KOG3785|consen 233 INGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD 312 (557)
T ss_pred hccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC
Confidence 12221111 1 1112222211 011 1122234455789999999999987764
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 280 QESIRPDIVTWNSLIRWHCKAGD-------VAKALELFTQMQEQGFYPDPK-IFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
-. .| .-|-.-.-.++..|+ ..-|.+.|+-.-+.+..-|.. --.++.+++.-..++++....+..+...
T Consensus 313 Pt--tP--~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 313 PT--TP--YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred CC--Ch--HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22 222222222333333 455666665544444333321 1234455555666788888888887765
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-
Q 010236 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFC-ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVM- 429 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~- 429 (514)
-...|...+ .+.++++..|.+.+|+++|-.+....++ |..+|. .|.++|.+++.++.|+.++-++... .+..+
T Consensus 389 F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsL 463 (557)
T KOG3785|consen 389 FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSL 463 (557)
T ss_pred hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHH
Confidence 444444444 5788999999999999999988766554 444554 5667889999999999888776532 23333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTY 465 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 465 (514)
...+..-|.+++.+--|.+.|+.+...+ |++..|
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 3445568889999999999999888754 555545
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=5.1e-07 Score=85.45 Aligned_cols=411 Identities=14% Similarity=0.151 Sum_probs=196.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChHhHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG------FNPKLRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~ 151 (514)
..|...+...-..|-++-++.++++..+. ++..-+--|..+++.+++++|.+.+...+... -+.+...|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 35777777777778888888888888753 45556777888888888888888777665321 123344455
Q ss_pred HHHHHHHhcCChhhH---HHHHHHHHHcCCCcC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010236 152 ILLRGFLKKGLLGLG---SRLLMVMEDMGICRN--QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 152 ~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
-+-+..++.-+.-.. ..+++.+... -+| -..|++|.+.|.+.|.+++|.++|++....-. ...-|..+.++
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~ 290 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDA 290 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHH
Confidence 444444443332221 1222222211 122 23566666666666666666666666544311 12222222222
Q ss_pred HH------------------------------------------------------------------ccCChHHHHHHH
Q 010236 227 YR------------------------------------------------------------------DNGMWKKAVGIV 240 (514)
Q Consensus 227 ~~------------------------------------------------------------------~~g~~~~a~~~~ 240 (514)
|. ..|+..+-...+
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHH
Confidence 21 112233333333
Q ss_pred HHHHHcCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 241 EEIREMGLSL------DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD---IVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 241 ~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
.++.+. +.| -...|..+.+.|-..|+++.|..+|++..+-..+-- ..+|......=.+..+++.|+++++
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333322 111 122455556666666666666666666554321100 1233333333344555666666655
Q ss_pred HHHHCCC----------CC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcc
Q 010236 312 QMQEQGF----------YP-------DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374 (514)
Q Consensus 312 ~m~~~g~----------~p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 374 (514)
......- .| +...+...++.--..|-++....+++.+++..+.....+.| ....+....-++
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfe 528 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFE 528 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHH
Confidence 5432100 00 12233333444444556666666666666554332222222 111223344455
Q ss_pred hHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc---CCHHHHHHHHHHhhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHH
Q 010236 375 DPEECIAALKLEGLQPSG-SMFCILANAYAQQ---GLCEQTVKVLQLMEPEGIEPNLVMLNVLI--NAFGVAGKYKEALS 448 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~ 448 (514)
++.+++++-...-..|+. ..|+..+.-+.+. ..++.|..+|++..+ |.+|...-+--|+ ..=-+.|....|..
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 566655554333222332 2444444433321 256777777777766 4444332211111 11223466666777
Q ss_pred HHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 010236 449 VYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (514)
Q Consensus 449 ~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 502 (514)
+++++... +++. ...|+..|.-....=-+.....+|++.++ .-||......
T Consensus 608 iyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~m 660 (835)
T KOG2047|consen 608 IYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREM 660 (835)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHH
Confidence 77665432 3322 23455555444333334455566666665 3555544443
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.4e-12 Score=80.72 Aligned_cols=49 Identities=41% Similarity=0.728 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=3.4e-10 Score=97.60 Aligned_cols=229 Identities=11% Similarity=0.029 Sum_probs=107.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc
Q 010236 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (514)
Q Consensus 116 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (514)
+.+.+.|.+.|.+.+|.+-++..++. .|-+.||-.|-..|.+..+...|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 34445555555555555555554443 344445555555555555555555555544432 112222223344444445
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010236 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 275 (514)
++.++|.++|+...+.. +.++....++...|.-.++++.|+..|+++++.|+ .+...|+.+.-.|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555554432 11334444444444455555555555555555553 24444444444444455555555555
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 276 EKMQQESIRPD--IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 276 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
++....-..|+ ...|..+-......|++..|.+.|+-....+ .-....++.+.-.-.+.|+.+.|..++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 55443322222 1234444444445555555555555544432 11334444444444555555555555554443
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.8e-07 Score=87.53 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH--HHHHHH-
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI--LLRGFL- 158 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~- 158 (514)
+=++.+...|++++|++..+++...+ +.+...+..=+-++.+.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 45677788999999999999999876 56677788888889999999999965544221 112222 234444
Q ss_pred -hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010236 159 -KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 159 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
+.+..++|...++.... .+..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 68999999998883332 234466667778889999999999999986653
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=2.6e-08 Score=96.31 Aligned_cols=290 Identities=14% Similarity=0.127 Sum_probs=137.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHc---
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV-YGKVIGLYRD--- 229 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~--- 229 (514)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+... |..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34456677777777777664432 22233444556666777777777777777777663 33333 3333333311
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010236 230 --NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKA 306 (514)
Q Consensus 230 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 306 (514)
..+.+...++++++...- |.......+.-.+..-..+. .+...+..+..+|+++ +++.+-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 124555566666665542 22222222222222211222 2334445555555532 344444444433333333
Q ss_pred HHHHHHHHHC----CC----------CCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 010236 307 LELFTQMQEQ----GF----------YPDP--KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (514)
Q Consensus 307 ~~~~~~m~~~----g~----------~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (514)
.+++...... +. .|.. .++..+...|...|++++|..+++..++.. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 3444443321 10 1122 122333444555555555555555555543 22244555555555555
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--------HHHHHHHHHHHcCC
Q 010236 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--------MLNVLINAFGVAGK 442 (514)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--------~~~~li~~~~~~g~ 442 (514)
|++.+|.+.++.....+. -|..+-+..+..+.+.|+.++|.+++....+.+..|-.. .......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555442 244444444455555555555555555554443222111 11233344555555
Q ss_pred HHHHHHHHHHH
Q 010236 443 YKEALSVYHLM 453 (514)
Q Consensus 443 ~~~A~~~~~~m 453 (514)
+..|++.|...
T Consensus 321 ~~~ALk~~~~v 331 (517)
T PF12569_consen 321 YGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=5.1e-09 Score=99.88 Aligned_cols=131 Identities=21% Similarity=0.279 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CC
Q 010236 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREM-----GL-SLDR-QIYNSIIDTFGKYGELVEALEVFEKMQQE-----S-IR 284 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~ 284 (514)
.+...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44455666777777777777777665543 10 1222 22333555666666666666666665532 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHccCCHHHHHHHHHHH
Q 010236 285 PD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQ-----GFY-PDP-KIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 285 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
|. ..+++.|...|.+.|++++|..+++...+- |.. |.. ..++.+...|...+++++|..++...
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 234555556666677766666666554421 111 111 12333444455555555555555543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.3e-08 Score=97.21 Aligned_cols=245 Identities=18% Similarity=0.193 Sum_probs=147.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCChhh-HHHHHHHHHccCChHHHHHHHHHHHHc-----C--
Q 010236 182 QETYEILLDYHVNAGRLDDTWLIINEMRSK-----GF-QLNSFV-YGKVIGLYRDNGMWKKAVGIVEEIREM-----G-- 247 (514)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-- 247 (514)
..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666899999999999999999987654 21 223322 334667888999999999999988753 2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC---C
Q 010236 248 LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-----SI-RPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQ---G 317 (514)
Q Consensus 248 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g 317 (514)
.+.-..+++.|..+|.+.|++++|...+++..+- +. .|.+. .++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1223567888888999999999999888876532 21 22332 3556677788899999999998866532 1
Q ss_pred CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 010236 318 FYPD----PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS 393 (514)
Q Consensus 318 ~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 393 (514)
+.++ ..++..+...|...|++++|.++++.++...... ......-...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~----------------------------~~~~~~~~~~ 410 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL----------------------------LGKKDYGVGK 410 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc----------------------------ccCcChhhhH
Confidence 1111 2345555556666666666666655554321000 0000001122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEP----EGI-EPN-LVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
.++.+...|.+.+.+++|.++|.+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444444444444444444443221 111 122 3466677777777777777777766553
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=6.4e-08 Score=93.64 Aligned_cols=296 Identities=15% Similarity=0.131 Sum_probs=212.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
...-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++ .|..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence 3344456778999999999999876543 334456677888999999999999999999999875 44445555555552
Q ss_pred hc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010236 194 NA-----GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW-KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 194 ~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 267 (514)
.. .+.+...++|+++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 22 35677888999887763 4444443333223222223 3455566677777754 356777777776666
Q ss_pred HHHHHHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 010236 268 LVEALEVFEKMQQE----S----------IRPDIVTW--NSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PKIFITIIS 330 (514)
Q Consensus 268 ~~~A~~~~~~m~~~----~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 330 (514)
.+-..+++...... + -+|....| .-+.+.|...|++++|++++++.++. .|+ +..|..-..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 66666666665432 1 13444334 55677788999999999999999986 454 677888888
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH------HH--HHHHHHH
Q 010236 331 CLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS------MF--CILANAY 402 (514)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~li~~~ 402 (514)
.+-+.|++.+|.+.++.....+ ..|...-+-.+..+.++|++++|.+++..+.+.+..|... .| .-...+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 4577777888889999999999999999998776544321 22 3345678
Q ss_pred HhcCCHHHHHHHHHHhh
Q 010236 403 AQQGLCEQTVKVLQLME 419 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~ 419 (514)
.+.|++..|++.|....
T Consensus 316 ~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 88999999999888765
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=3.5e-07 Score=86.65 Aligned_cols=399 Identities=14% Similarity=0.125 Sum_probs=262.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..++..| ..+++...+++.+.+.+. .+-...|.....-.+...|+-++|..........+ ..+.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 455566665 568999999999998874 33445555555556678899999999988887754 466788999888888
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
...++++|++.|......+. -|...|.-+.-.-.+.|+++.......++.+.. +.....|..+..++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988654 566777777777778888888888777777652 2245678888888889999999999
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHH------HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 239 IVEEIREMG-LSLDRQIYNSIID------TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~li~------~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++..+.. -.|+...+..... ...+.|..++|++.+...... +.-....-.+-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999988764 2466665554333 345778888888887766543 11122223345566889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHccCCHHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 010236 312 QMQEQGFYPDPKIFITIIS-CLGELGKWDVIK-KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ 389 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 389 (514)
.+... .||..-|...+. ++.+..+.-++. .+|....+.- +.....-..=+.......-.+....++....+.|++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99985 567666655554 443333333333 5555554431 111111111111111122233344566667777765
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH----HHHhhhCC----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 390 PSGSMFCILANAYAQQGLCEQTVKV----LQLMEPEG----------IEPNLV--MLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~----~~~~~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
+ ++..+.+.|-.....+-..++ ...+...| -+|... ++..++..|-+.|+++.|...++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3 455555544332222211111 11111111 144443 4456777888999999999999998
Q ss_pred HHCCCCcCHH-HHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 454 KDIGISPDLV-TYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 454 ~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+. .|+.+ .|..=.+.+.+.|+.++|...+++..+.
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 874 45543 4556668899999999999999999874
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.1e-06 Score=78.86 Aligned_cols=307 Identities=12% Similarity=0.064 Sum_probs=202.4
Q ss_pred cChHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010236 180 RNQETYEILLDYHVN--AGRLDDTWLIINEMRSKG-FQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (514)
Q Consensus 180 ~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (514)
|+..+...-+.+++. .++...|...+-.+.... ++-|......+...+...|+.++|+..|++....+ +.+.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHH
Confidence 333333333444433 445455555554444333 34466677788888889999999999998877653 11222222
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
...-.+.+.|+.+....+...+.... .-....|-.-.......++++.|+.+-++.++... -+...|..-...+...+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhcc
Confidence 23334567788888777777766531 11333454445555667788888888888776421 13344444445677888
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHH
Q 010236 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA-NAYAQQ-GLCEQTVKV 414 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~~~-g~~~~a~~~ 414 (514)
+.++|.-.|+...... +.+...|..|+..|...|.+.+|...-+...+. +..+..+.+.+. ..|... .--++|.++
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 8999988888887764 456788999999999999999888777765543 223444444442 223222 234678888
Q ss_pred HHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010236 415 LQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 415 ~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
++..... .|+- ...+.+...+...|+.++++.+++.... ..||....+.|.+.+...+.+++|.+.|....+ +
T Consensus 427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~ 500 (564)
T KOG1174|consen 427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q 500 (564)
T ss_pred HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 8877664 5553 3556777788888999999999988765 457888889999999999999999998888876 5
Q ss_pred CCCH
Q 010236 494 TPDR 497 (514)
Q Consensus 494 ~p~~ 497 (514)
.|..
T Consensus 501 dP~~ 504 (564)
T KOG1174|consen 501 DPKS 504 (564)
T ss_pred Cccc
Confidence 6654
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=9e-08 Score=87.57 Aligned_cols=219 Identities=14% Similarity=0.044 Sum_probs=152.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010236 90 LGDIDEAMALLAQMQALG-FHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356777888888877643 1222 3457788888899999999999999998875 55678999999999999999999
Q ss_pred HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 010236 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
.+.|++..+..+ .+..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...+++....
T Consensus 118 ~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999988543 346778888888899999999999999988763 33322222233345677899999999776543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010236 247 GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE---SI--R-PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
. .++...+ .+...+ .|+...+ +.+..+.+. .+ . .....|..+...+.+.|++++|+..|++..+..
T Consensus 195 ~-~~~~~~~-~~~~~~--lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWGW-NIVEFY--LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccHH-HHHHHH--ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 2332222 233322 3444333 234443321 11 1 123568888888899999999999999888753
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.1e-07 Score=81.45 Aligned_cols=327 Identities=14% Similarity=0.093 Sum_probs=216.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH-HHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI-LLRGFL 158 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~ 158 (514)
+.+.+..+.+..++.+|++++..-.++. +.+....+.+...|-...++..|-+.|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4567778889999999999999888874 337778888888999999999999999998764 355444432 235566
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHH--HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILL--DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
+.+.+..|+++...|... ++...-..-+ ......+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 788999999999888753 2221111111 22345788888888888776433 444555555556789999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-------------CCHH---------------
Q 010236 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-------------PDIV--------------- 288 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-------------p~~~--------------- 288 (514)
.+-|+...+-+--.....||..+. ..+.++++.|++...++.++|++ ||+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999999887654445667776554 44678999999999999887653 1221
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQE-QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (514)
.+|.-...+.+.|+++.|.+.+-+|.- .....|++|...+.-.- ..+++....+-+.-++..+ +....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 122223345678889999888888752 22445777765543322 2334555555556666654 35577888888999
Q ss_pred HhcCCcchHHHHHHHHHHcCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhh
Q 010236 368 GQYGRFRDPEECIAALKLEGL-QPSGSMFCILANAYA-QQGLCEQTVKVLQLME 419 (514)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~ 419 (514)
|+..-++-|-+++.+-..... -.+...|+ ++.++. ..-..++|.+-++.+.
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999988888866322111 11223333 334433 3346677766665543
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.3e-06 Score=84.63 Aligned_cols=380 Identities=12% Similarity=0.079 Sum_probs=239.7
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH-h
Q 010236 106 LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-T 184 (514)
Q Consensus 106 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 184 (514)
..+.-|...|..+.-++...|+++.+.+.|++....- --....|..+...|...|.-..|..+++.-......|+.. .
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3455577888888888888899998888888876532 3445678888888888888888888887766544334333 3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCChhhHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCC
Q 010236 185 YEILLDYHV-NAGRLDDTWLIINEMRSK--GF--QLNSFVYGKVIGLYRDN-----------GMWKKAVGIVEEIREMGL 248 (514)
Q Consensus 185 ~~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~ 248 (514)
+-..-..|. +-+..+++++.-.+.... +. ...+..|..+.-+|... ....++++.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 333333333 345666666666555541 11 11233344333333321 224567777777776653
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-------
Q 010236 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ-GFYP------- 320 (514)
Q Consensus 249 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p------- 320 (514)
. |..+...+.--|+..++++.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+...+. |..-
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2 333333334457777889999999888887755568888988888888889999999888876542 2100
Q ss_pred -------C----HHHHHHHHHHHHc---------c--------------CCHHHHHHHHHHH----H----hcC----CC
Q 010236 321 -------D----PKIFITIISCLGE---------L--------------GKWDVIKKNFENM----K----DRG----HG 354 (514)
Q Consensus 321 -------~----~~~~~~ll~~~~~---------~--------------~~~~~a~~~~~~~----~----~~~----~~ 354 (514)
| ..|...++...-. . ++..++......+ . ..+ .+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 0 1122222221110 0 0111111111110 0 001 00
Q ss_pred -------Cc------HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 355 -------KI------GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 355 -------~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
++ ...|....+.+.+.+..++|...+.+..... .-....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 11 2245556667777788888877777766543 234555666666677788889999988888765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 422 GIEPNLVMLNVLINAFGVAGKYKEALS--VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+ +-++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|....+
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 3 3345678889999999998877777 88888887655 788899999999999999999999988876
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-06 Score=81.43 Aligned_cols=220 Identities=14% Similarity=0.074 Sum_probs=112.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHH
Q 010236 223 VIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNS-------LIR 295 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~ 295 (514)
+.++..+..+++.+++.+....+.. .+..-++....+|...|++.++...-+...+.|.. ...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 4444445555555555555555543 34444555555566666655555555544443321 1111222 222
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcch
Q 010236 296 WHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRD 375 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 375 (514)
+|.+.++++.++..|.+.......|+.. .+....+++.+..+...-.+... ..-...-...+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHH
Confidence 3444455566666665544432222211 11122222222222222111111 1111122445667778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 376 PEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 376 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
|...|.+++..+ +-|...|+...-+|.+.|.+..|++-.+...+.. ++....|.-=..++....+++.|.+.|++..+
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877765 3466777777777778888777777766666552 22333444444455556677777777777776
Q ss_pred CC
Q 010236 456 IG 457 (514)
Q Consensus 456 ~~ 457 (514)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 43
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.7e-07 Score=80.22 Aligned_cols=269 Identities=10% Similarity=0.000 Sum_probs=119.8
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010236 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (514)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 223 (514)
+.|+.....+...+...|+.++|...|++....++ -+........-.+.+.|++++...+...+.... .-....|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 34455555555555555666666555555544221 011111111222334555555555544444321 0011112222
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (514)
........+++.|+.+-++.++.+ +.+...+-.=...+...++.++|.-.|+...... +-+..+|.-|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 223334445555555555555442 2233333333344445555555555555544321 12445555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHH
Q 010236 304 AKALELFTQMQEQGFYPDPKIFITII-SCLG-ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (514)
.+|.-.-+..... +..+..+.+.+. ..|. ....-++|.++++..++.. +.-....+.+...+...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 5555444443321 222333333221 1111 1222345555555554443 2223344445555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 382 ALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
..... .||....+.|.+.+...+.+++|++.|.....
T Consensus 463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 54432 34555555555555555555555555555544
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=1.8e-07 Score=77.36 Aligned_cols=191 Identities=13% Similarity=-0.015 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
...|.-+|.+.|++..|..-+++.++.. +-+..+|..+...|-+.|..+.|.+-|++..+.. +.+-.+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3444455666666666666666666553 2334455555566666666666666666665543 3344455555555555
Q ss_pred cCChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
.|++++|...|++.....--+ -..+|..+.-+..+.|+++.|...|++..+.... ...+...+.+...+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 555555555555555432111 1234445555555555555555555555444211 23333444444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010236 239 IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
.++.....+. ++..+.-..|..--..|+.+.+.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444444332 3444433344444444444444333
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.4e-07 Score=86.40 Aligned_cols=218 Identities=10% Similarity=0.022 Sum_probs=128.2
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010236 126 GRTLEADAIFQEMVCFG-FNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 126 g~~~~A~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
+..+.++.-+.+++... ..|+ ...|..+...|.+.|+.++|...|++..+..+ .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777776766432 1121 34566677777788888888888888777654 45677888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010236 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 203 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
..|++..+.... +..++..+..++...|++++|.+.++...+.+ |+..........+...++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888887765322 45666667777777788888888888777653 222111122222344567777877776544321
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010236 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG---F--YP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
.|+. |.. .......|+...+ +.+..+.+.- . .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 221 1222334554443 2444443210 0 00 12345556666666666666666666666554
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=2.1e-07 Score=77.02 Aligned_cols=208 Identities=14% Similarity=0.041 Sum_probs=175.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
+...+.-.|...|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+.|++..+..+ .+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34566778999999999999999999976 55677899999999999999999999999998654 56788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 272 (514)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++.++.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998764322 46788888889999999999999999999875 334566777888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010236 273 EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
..++.....+. ++..+.-..|..--..|+.+.+-++=.++... .|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99999988765 78888888888888999999998887777763 455554443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=2.8e-06 Score=80.69 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEPEGIE--------PNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
...++...|+.+.|..+++.+...... ..+...-....++...|+.++|.+.+.+..
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555666666666666665442111 011111222233445666666666666554
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.05 E-value=2.9e-06 Score=80.60 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCC---C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 362 ILVDIYGQYGRFRDPEECIAALKLEGLQ---P-----SGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
....++...|+.++|..+++.+...... - .........-++...|+.++|.+.+.....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555666777777777666542211 0 011112222345577888888888877664
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2.4e-05 Score=76.19 Aligned_cols=417 Identities=12% Similarity=0.089 Sum_probs=269.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH----------------------HHhcCChHHHHHH----HHHHHHcC
Q 010236 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEA----------------------LASVGRTLEADAI----FQEMVCFG 142 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~----------------------~~~~g~~~~A~~~----~~~~~~~g 142 (514)
+.+...+++.-+.....++.+.+..++..+-.. ++-..+.+++.-. +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 345666777766666665554444444333222 2222333444322 22233334
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHH
Q 010236 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-SFVYG 221 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~ 221 (514)
+..|...|..+.-+...+|++..+.+.|++....-+ .....|+.+...|...|....|..+++.-......|+ ...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 567889999999999999999999999998875433 4567899999999999999999999988766543343 34444
Q ss_pred HHHHHHH-ccCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCC-CC
Q 010236 222 KVIGLYR-DNGMWKKAVGIVEEIREM--GL--SLDRQIYNSIIDTFGKY-----------GELVEALEVFEKMQQES-IR 284 (514)
Q Consensus 222 ~ll~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~~-~~ 284 (514)
..-..|. +.+..++++.+-.++++. +. ......|-.+.-+|... ....++++.+++..+.+ ..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444454 457788888877777652 11 12233444444444321 12456778888887764 33
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCC---------
Q 010236 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR-GHG--------- 354 (514)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------- 354 (514)
|++..| +.--|+-.++.+.|++..++..+.+-.-+...+..+.-.+...+++.+|+.+.+...+. +..
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 444444 33346778899999999999998766668888888888888999999999998877643 210
Q ss_pred ---------CcHHHHHHHHHHHHh-----------------------cCCcchHHHHHHHHH--------HcC-------
Q 010236 355 ---------KIGAIYAILVDIYGQ-----------------------YGRFRDPEECIAALK--------LEG------- 387 (514)
Q Consensus 355 ---------~~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~~~--------~~~------- 387 (514)
....++..++..+-. .++..+|......+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001222222222220 011112222211110 001
Q ss_pred --C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 388 --L--QPS------GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 388 --~--~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
+ .|+ ...|......+.+.+..++|...+.+..... +-....|......+...|...+|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 111 2345556667778888888888777776542 4456677777788889999999999999888754
Q ss_pred CCcCHHHHHHHHHHHHcCCCcchHHH--HHHHHHhCCCCC-CHHHHHHHHHHHHHhhh
Q 010236 458 ISPDLVTYSTLMKAFIRAKKFHKVPE--IYKQMESSGCTP-DRKARQILQSALVVLEQ 512 (514)
Q Consensus 458 ~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g~~p-~~~~~~~l~~a~~~~~~ 512 (514)
+. ++.+..++..++.+.|+..-|.. ++..+.+ +.| +...|..|...+...|+
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccc
Confidence 33 56788999999999998887777 8888888 555 56788888877776664
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=4.8e-06 Score=89.67 Aligned_cols=335 Identities=11% Similarity=-0.003 Sum_probs=209.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCh--hhHHHHHHHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF------QLNS--FVYGKVIGLYR 228 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~~--~~~~~ll~~~~ 228 (514)
....|+++.+...++.+.......+..........+...|++++|...+......-- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344567776666666553211112222233445556678999999998887754311 1111 11222334566
Q ss_pred ccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHh
Q 010236 229 DNGMWKKAVGIVEEIREMGLSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQQE----SI-RPDIVTWNSLIRWHCK 299 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~ 299 (514)
..|++++|...+++........+ ....+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999998876321222 134456666778899999999999887642 11 1112344556667888
Q ss_pred cCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHH
Q 010236 300 AGDVAKALELFTQMQEQ----GFY--P-DPKIFITIISCLGELGKWDVIKKNFENMKDR----GHGKIGAIYAILVDIYG 368 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~ 368 (514)
.|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886542 221 1 1233444555677789999999988877543 21112344555667788
Q ss_pred hcCCcchHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGLQP-SGSMF-----CILANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGV 439 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 439 (514)
..|+.++|.+.+.......... ....+ ...+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421111 11111 11224445678999999998776543211111 124566778889
Q ss_pred cCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 440 AGKYKEALSVYHLMKDI----GISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987542 33322 235667778888999999999999998864
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=3.4e-06 Score=90.84 Aligned_cols=337 Identities=11% Similarity=0.008 Sum_probs=211.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC------CcC--hHhHHHHHHHH
Q 010236 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI------CRN--QETYEILLDYH 192 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~~~~li~~~ 192 (514)
.+...|+++.+..+++.+.......+..........+...|++++|...++...+.-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777666552211112222334445556678999999999887754311 011 11222333456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCC---C--CCHHHHHHHHHHHh
Q 010236 193 VNAGRLDDTWLIINEMRSKGFQLNS----FVYGKVIGLYRDNGMWKKAVGIVEEIREMGL---S--LDRQIYNSIIDTFG 263 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~li~~~~ 263 (514)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.....- . ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999988764211121 2345556677889999999999998764311 1 11234566677788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 010236 264 KYGELVEALEVFEKMQQE----SIR--P-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GFYPD--PKIFITIISCL 332 (514)
Q Consensus 264 ~~~~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~ 332 (514)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 211 1 2233445566677789999999999887642 11122 23344455677
Q ss_pred HccCCHHHHHHHHHHHHhcC--CCCcHH--H--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 010236 333 GELGKWDVIKKNFENMKDRG--HGKIGA--I--YAILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYA 403 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~ 403 (514)
...|+.+.|...++...... ...... . ....+..+...|+.+.|.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78999999999988875421 111111 0 11122445567899999998877543221111 111345667788
Q ss_pred hcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 404 QQGLCEQTVKVLQLMEPE----GIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
..|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999887653 32222 2456677788999999999999999987643
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.1e-06 Score=75.53 Aligned_cols=290 Identities=13% Similarity=0.113 Sum_probs=203.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHH-HHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEI-LLDYH 192 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~ 192 (514)
-+++.+..+.+..++++|++++..-.+.. +.+....+.|..+|....++..|-+.++++...- |....|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 46677778888999999999999888764 4477888999999999999999999999998743 45444433 24566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010236 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI----GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
.+.+.+.+|+++...|... ....+..+ ......+++..+..+.++....| +..+.+...-...+.|++
T Consensus 89 Y~A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 7789999999999888653 22222222 22345788888888888776433 455556666667899999
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH--------HHH
Q 010236 269 VEALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP-------------DPK--------IFI 326 (514)
Q Consensus 269 ~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~--------~~~ 326 (514)
++|.+-|+...+- |.. ....|+..+ +..+.|+++.|+++..++.++|++. |.. .-+
T Consensus 161 EaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999998775 454 455777555 4567899999999999999877532 211 122
Q ss_pred HHHHH-------HHccCCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010236 327 TIISC-------LGELGKWDVIKKNFENMKDR-GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 327 ~ll~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
.++.+ +.+.++++.|.+.+..|.-+ ....|+++...+.-. -..+++.+..+-+.-+...++- ...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHH
Confidence 33333 44778888888888887643 334556655444322 1245566666666666655543 45688888
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 010236 399 ANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~ 418 (514)
+-.||+..-++-|-.++.+-
T Consensus 317 LllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhC
Confidence 88999999888888887654
No 91
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=3.5e-05 Score=71.97 Aligned_cols=410 Identities=10% Similarity=0.125 Sum_probs=244.9
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
-|..+|+.||+-+..+ .++++.+.++++... ++-....|..-|..-...++++....+|.+.+.. ..+...|..-+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 3678999999987665 999999999999864 3456778999999999999999999999998875 35566777766
Q ss_pred HHHHh-cCChhh----HHHHHHHHH-HcCCCc-ChHhHHHHHHHH---------HhcCCHHHHHHHHHHHHHcCCCCChh
Q 010236 155 RGFLK-KGLLGL----GSRLLMVME-DMGICR-NQETYEILLDYH---------VNAGRLDDTWLIINEMRSKGFQLNSF 218 (514)
Q Consensus 155 ~~~~~-~g~~~~----A~~~~~~~~-~~~~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~~ 218 (514)
+---+ .|+... ..+.|+-.. +.|..+ +-..|+..+..+ ..+.+.+...++|.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 54433 333332 233444433 334333 233466665543 33445666777777776532211011
Q ss_pred h------HHHHHHH-------HHccCChHHHHHHHHHHHH--cCCCCC---------------HHHHHHHHHHHhccCC-
Q 010236 219 V------YGKVIGL-------YRDNGMWKKAVGIVEEIRE--MGLSLD---------------RQIYNSIIDTFGKYGE- 267 (514)
Q Consensus 219 ~------~~~ll~~-------~~~~g~~~~a~~~~~~~~~--~~~~~~---------------~~~~~~li~~~~~~~~- 267 (514)
. |..=|+. --+...+..|.++++++.. .|+... ...|-.+|..=-..+-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 1 1111111 1123456677777777653 232211 1224444443221111
Q ss_pred -----H--HHHHHHHHH-HHHCCCCCCHHH-HHHH----HHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 010236 268 -----L--VEALEVFEK-MQQESIRPDIVT-WNSL----IRWHCKAGD-------VAKALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 268 -----~--~~A~~~~~~-m~~~~~~p~~~~-~~~l----i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
. ....-++++ +.--+..|++-- +... -+.+...|+ -+++..+++...+.-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011111222 111223333211 0111 112333343 3455555655544322223333433
Q ss_pred HHHHHH---ccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 010236 328 IISCLG---ELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-SGSMFCILANAYA 403 (514)
Q Consensus 328 ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~ 403 (514)
+.+.-- +-.+.+.....+++++......-..+|..+++..-+..-+..|..+|.+..+.+..+ +..+.++++.-|+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 332211 111355556666666654433345567788888888888999999999998887777 6677777777665
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchH
Q 010236 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKV 481 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a 481 (514)
.++.+-|.++|+.-.+. +.-+..--...+.-+...++-..|..+|++....++.|| ...|..++.-=..-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46888999999876654 233444446777788888999999999999988766665 46899999988999999999
Q ss_pred HHHHHHHHh
Q 010236 482 PEIYKQMES 490 (514)
Q Consensus 482 ~~~~~~m~~ 490 (514)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 888888765
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.4e-07 Score=85.05 Aligned_cols=247 Identities=15% Similarity=0.107 Sum_probs=95.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666654444 222211112233334445555566554322 2222222 34444443333333322333444
Q ss_pred HHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 272 LEVFEKMQQESIRPDIVTWN-SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
+.-+++.......++..++. .....+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 43333332222111111221 1122334455555555554321 2344444455555555555555555555554
Q ss_pred cCCCCcHHHHHHHHHHHH----hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 010236 351 RGHGKIGAIYAILVDIYG----QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (514)
Q Consensus 351 ~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 426 (514)
.+ .| .+...+..++. -.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-+
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 32 11 11222222221 122344555555554332 23344444444444445555555555544444332 223
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 010236 427 LVMLNVLINAFGVAGKY-KEALSVYHLMK 454 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 454 (514)
..+...++.+....|+. +.+.+.+.++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 33444444444444444 33444444444
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.3e-06 Score=76.40 Aligned_cols=393 Identities=13% Similarity=0.088 Sum_probs=216.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCC
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-LRFYNILLRGFLKKGL 162 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~ 162 (514)
-++.+..|+++.|+.+|-+..... ++|.+.|..-..+|++.|++++|++=-.+-++. .|+ ...|+-...++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999988876 668899999999999999999998877777665 344 4578888888888999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH---HHHHHHHHc---CCCCChhhHHHHHHHHHcc------
Q 010236 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW---LIINEMRSK---GFQLNSFVYGKVIGLYRDN------ 230 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~~~~~~~~~ll~~~~~~------ 230 (514)
+++|+..|.+-.+... .|...++-+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999998887543 45667777777762111000000 011111000 0000111222222221110
Q ss_pred -CChHHHHHHHHHHHHc--------C-------CCC----------------------CHHHHHHHHHHHhccCCHHHHH
Q 010236 231 -GMWKKAVGIVEEIREM--------G-------LSL----------------------DRQIYNSIIDTFGKYGELVEAL 272 (514)
Q Consensus 231 -g~~~~a~~~~~~~~~~--------~-------~~~----------------------~~~~~~~li~~~~~~~~~~~A~ 272 (514)
.......+....+... + ..| -..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0001111111111000 0 000 0011233444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHccCCHHHHHHHH
Q 010236 273 EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI-------TIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~ 345 (514)
+.+....+.. -+..-++....+|...|.+.+....-....+.|.. ...-|+ .+..++.+.++++.+...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 5555555432 13333334444455555555554444444433321 111111 1222334444555555555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 010236 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS-MFCILANAYAQQGLCEQTVKVLQLMEPEGIE 424 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 424 (514)
.+.+.....|+. ..+....+++....+...-. .|... -...-...+.+.|++..|++.+.++++.. +
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 554432212111 11112222222222222111 11110 01111445678899999999999999885 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
-|...|....-+|.+.|.+..|+.-.+...+.... ....|.-=..++....++++|.+.|++..+ ..|+..
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~ 460 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNA 460 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhH
Confidence 67889999999999999999999988888775221 233454445566667789999999998887 456554
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.3e-05 Score=71.09 Aligned_cols=372 Identities=13% Similarity=0.098 Sum_probs=199.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH----HHHH
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL----LDYH 192 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----i~~~ 192 (514)
+=++-+...|++++|.+...++...+ +.+...+..-+-+..+.+++++|+.+.+.-.. ..+++.. ..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 34556678899999999999999876 66677778878888999999999965544321 1122222 3344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHH
Q 010236 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A 271 (514)
.+.+..++|+..++-.... |..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+- .+
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~ 158 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AA 158 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------Hh
Confidence 5789999999998833221 34466666778999999999999999998765321 111111111110 01
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHc
Q 010236 272 LEVFEKMQQESIRPDIVTWNSL---IRWHCKAGDVAKALELFTQMQEQ-------GFYPDP-------KIFITIISCLGE 334 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-------~~~~~ll~~~~~ 334 (514)
... ..+......| ..+|..+ ...+...|++.+|+++++...+. +-.-+. ..-..+.-.+..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 0111111112 1233222 22344566666666666665211 100000 011122333445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhc-----------------------------------------
Q 010236 335 LGKWDVIKKNFENMKDRGHGKI---GAIYAILVDIYGQY----------------------------------------- 370 (514)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~----------------------------------------- 370 (514)
.|+-.+|..++...++...... ...-|.|+.+-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665542211 11112222111000
Q ss_pred ----CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010236 371 ----GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ--GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYK 444 (514)
Q Consensus 371 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (514)
+..+.+.++...+. +..|. ..+..++..+.+. ..+..+.+++...-+....-...+.-.++......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 11111111111111 11222 2344444433222 246667777776665422222345556667778899999
Q ss_pred HHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhhhc
Q 010236 445 EALSVYH--------LMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS--GCTPDRKARQILQSALVVLEQR 513 (514)
Q Consensus 445 ~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~a~~~~~~~ 513 (514)
.|++++. .+.+.+..|- +..++...+.+.++.+.|..++.+.... .-.+.......+..-.+.++.|
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999998 5555444443 4556666777777777787777777642 2334445555555555555443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=5e-07 Score=84.64 Aligned_cols=221 Identities=15% Similarity=0.114 Sum_probs=150.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
..-+.+.|++.+|.-.|+...+.. +-+...|..|....+.+++-..|+..+++..+.. +.+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345578888888888888887764 4567788888888888888888888888888865 45667777888888888888
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHccC
Q 010236 164 GLGSRLLMVMEDMGICRNQETYEILL-----------DYHVNAGRLDDTWLIINEMR-SKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~ll~~~~~~g 231 (514)
..|.+.++......++ |..+. ..+.....+....++|-++. ..+..+|+.....|.-.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 8888888887654321 00000 11111222334445555543 3343466777777777777778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPD-IVTWNSLIRWHCKAGDVAKALELF 310 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 310 (514)
++++|+..|+.++... +-|...||.|...++...+.++|+..|++.++. .|+ +..+..|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 8888888888777654 446777888888887777788888888777764 444 234445666677778888777776
Q ss_pred HHHH
Q 010236 311 TQMQ 314 (514)
Q Consensus 311 ~~m~ 314 (514)
-..+
T Consensus 522 L~AL 525 (579)
T KOG1125|consen 522 LEAL 525 (579)
T ss_pred HHHH
Confidence 6544
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=3.9e-07 Score=82.19 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=127.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 010236 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK 305 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 305 (514)
-+.-.|.+..++.-.+ ......+.+......+.+++.-.|+.+.++ .++.... .|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444566666665444 222211222334444556666666655433 3333322 4555555444433333234444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010236 306 ALELFTQMQEQGFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 306 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
++.-+++.......+ +..........+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444433322222 2222222233455667777776665432 245555666777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010236 385 LEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 385 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++++..+.+..
T Consensus 159 ~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 53 223 233334443322 22567777777776554 4566677777777777777777777777776654433
Q ss_pred CHHHHHHHHHHHHcCCCc-chHHHHHHHHHh
Q 010236 461 DLVTYSTLMKAFIRAKKF-HKVPEIYKQMES 490 (514)
Q Consensus 461 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 490 (514)
|+.++..++.+....|+. +.+.+++.++.+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555666666666666666 445666666665
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=8.6e-06 Score=79.51 Aligned_cols=258 Identities=12% Similarity=0.122 Sum_probs=131.3
Q ss_pred CcchHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CC
Q 010236 76 SGNSYNKSIQ--YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-G--------FN 144 (514)
Q Consensus 76 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g--------~~ 144 (514)
|..+-..+++ .|.-.|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445455554 4556688888877777665 4457888888888887777776666555321 1 01
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010236 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
++ .+-.-..-.....|.+++|..+|.+.+. |..|=+.|...|.+++|+++-+.-.+..+ ..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 21 2222222333456777777777777665 33344556667777777776554322221 23444444
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010236 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
.-+...++.+.|++.|++.-.. -..++..|. .+......+.+++. |...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 4455566677776666653211 001111110 01111111122221 3333444444444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 383 (514)
.|+.+|..... |-+++...|-.|+.++|-++-++- .|....-.|.+.|...|++.+|...|-+.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66665555432 333444445555555555443321 13444445556666666666666555543
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=4.6e-06 Score=80.31 Aligned_cols=167 Identities=18% Similarity=0.295 Sum_probs=84.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010236 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
.+......+.+|+.+++.+.++.. ...-|..+...|+..|+++.|.++|-+.- .+.-.|.+|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 334455566666666666665422 22235555666677777777776665431 1334556667777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
.|.++-++.. +.......|-+-..-+-+.|++.+|++++-.+. .|+. .|..|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 7666554442 223334445444455555666666666554432 2222 2445555555555555544432
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
... -..|-..+..-+-..|+...|...|-
T Consensus 878 ~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 878 GDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 111 11223333444444455555444443
No 99
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=3.2e-06 Score=81.40 Aligned_cols=189 Identities=19% Similarity=0.268 Sum_probs=86.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
....+.+|+.+++.+.... .-...|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|++++|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3344445555554444331 122334444455555555555555554321 23344555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 010236 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (514)
+-++.. |.......|..-..-+-+.|++.+|.++|-... .|+ ..|.+|-+.|..+..+++.++-...
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh--
Confidence 544332 122233344444444455555555555543322 122 1344555555555555444432211
Q ss_pred CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010236 354 GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
.-..+...+..-|...|++..|++-|-+.. -|.+.+..|...+.+++|.++-+
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 112233344445555666666655554432 14445555655666666655543
No 100
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=7.6e-06 Score=74.89 Aligned_cols=215 Identities=8% Similarity=0.002 Sum_probs=148.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
+++.+-..+...++.++|+.+.+++.+.. +-+..+|+.....+...| ++++++..++++.+.. +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45556666777889999999999998874 334556777767777777 5789999999988765 45666777666666
Q ss_pred HhcCCh--hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CC
Q 010236 158 LKKGLL--GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GM 232 (514)
Q Consensus 158 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~ 232 (514)
.+.|+. +++...++++.+... .|..+|+.....+...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 667888888887655 67788888888888889999999999999887654 566666655554443 22
Q ss_pred ----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010236 233 ----WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY----GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (514)
Q Consensus 233 ----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (514)
.+..++...+++... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 245666666666554 45667777777777662 33455777776655532 2245556666666654
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=6.3e-05 Score=73.76 Aligned_cols=361 Identities=16% Similarity=0.173 Sum_probs=205.2
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-------C-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQAL-G-------F-HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFN 144 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 144 (514)
-.+-..|..|.+.|.+..+++-|.-.+..|... | . .++ .+-..+...-...|.+++|..+|.+..+
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---- 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 346678999999999999999887776665431 1 0 121 2222233344578999999999999876
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH----------HcCC-
Q 010236 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR----------SKGF- 213 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~g~- 213 (514)
|..|-..|-..|.+++|.++-+.=... .=..||......+-..++.+.|++.|++.. ...+
T Consensus 829 -----~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~ 900 (1416)
T KOG3617|consen 829 -----YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPK 900 (1416)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChH
Confidence 445556677789999999887654332 224577777777888889999998887532 1110
Q ss_pred --------CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 010236 214 --------QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRP 285 (514)
Q Consensus 214 --------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 285 (514)
..|...|.-....+...|+.+.|+.+|....+ |-+++...|-.|+.++|-++-++-.
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------ 965 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------ 965 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------
Confidence 11223333333334445555555555554443 4455666666777777776655432
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---------------CCHHHHHHHHHHHHh
Q 010236 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL---------------GKWDVIKKNFENMKD 350 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------------~~~~~a~~~~~~~~~ 350 (514)
|......+...|-..|++.+|...|.+.+. |...|+.|-.. .+.-.|-++|++.
T Consensus 966 d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-- 1034 (1416)
T KOG3617|consen 966 DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-- 1034 (1416)
T ss_pred cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--
Confidence 555566677778788888888877776543 22222222111 1222223333322
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH--------HHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 351 RGHGKIGAIYAILVDIYGQYGRFRDPEECIAA--------LKLE--GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 351 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
|. -....+..|-+.|.+.+|+++--+ ++.. +...|+...+--.+-++...++++|..++-..++
T Consensus 1035 -g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1035 -GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred -ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 10 112233455666666666554321 1111 2233455555555556666666666666665543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCH----HHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 421 EGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDL----VTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 421 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
|..-+.. |+..+..-..++-+.|. ..+-.|+. .....+...|.+.|.+..|-+-|.+.-
T Consensus 1109 ---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1109 ---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred ---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 2222222 23333333333334442 12122333 356777888999999999887776653
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=1.2e-08 Score=58.38 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.77 E-value=5.2e-05 Score=66.80 Aligned_cols=294 Identities=11% Similarity=0.038 Sum_probs=174.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCChHhH-HHHHHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASL---IEALASVGRTLEADAIFQEMVCFGFNPKLRFY-NILLRGF 157 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~ 157 (514)
-+.+.+...|++.+|+.-|....+. |+..|.++ ...|...|+-..|+.-+.+.++. +||-..- ..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4667788889999999999998865 34444444 45788889999999989888875 5764322 2234567
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcCh--Hh------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQ--ET------------YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 223 (514)
.+.|.++.|..-|+...+.....+. .. ....+..+...|+...|+.....+++..+ -|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHH
Confidence 8999999999999999876432111 11 12234445567788888888887776532 266666666
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH----HHH------
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTW----NSL------ 293 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~l------ 293 (514)
..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++..+. .||.... ..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 777888888888877777666543 335555666667777778888887777776654 3443221 111
Q ss_pred ---HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 010236 294 ---IRWHCKAGDVAKALELFTQMQEQGFYPDP---KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 294 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 367 (514)
+......++|-++++..+...+....... ..+..+-.++...+++.+|++.-.++++.. +.|+.++.--..+|
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHH
Confidence 01122334444444444444432211111 112223334444455555555555554432 23344454455555
Q ss_pred HhcCCcchHHHHHHHHHHc
Q 010236 368 GQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~ 386 (514)
.-...++.|+.-|+...+.
T Consensus 352 l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hhhHHHHHHHHHHHHHHhc
Confidence 5555555555555555443
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=9.3e-09 Score=58.85 Aligned_cols=32 Identities=41% Similarity=0.592 Sum_probs=23.7
Q ss_pred CCccCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010236 72 GEEFSGNSYNKSIQYCCKLGDIDEAMALLAQM 103 (514)
Q Consensus 72 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (514)
|..||.++||++|++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677777777777777777777777777776
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=0.00011 Score=64.74 Aligned_cols=97 Identities=8% Similarity=0.052 Sum_probs=63.5
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010236 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL---LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG 221 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 221 (514)
.++.-.--+...+...|++..|+.-|....+ -|+..|.++ ...|...|+...|+.-+.+.++. +||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 3445555667777777888888888877776 344445444 34677778877887777777765 55533221
Q ss_pred -HHHHHHHccCChHHHHHHHHHHHHcC
Q 010236 222 -KVIGLYRDNGMWKKAVGIVEEIREMG 247 (514)
Q Consensus 222 -~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (514)
.-...+.+.|.++.|..-|+..++..
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 12245667788888888888877764
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.76 E-value=1.3e-05 Score=82.70 Aligned_cols=205 Identities=13% Similarity=0.095 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010236 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREM-GLS---LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNS 292 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 292 (514)
...|...+......++.++|.++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.- -....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 444555555555666666666666655532 110 112345555555555555556666666665531 11234555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcC
Q 010236 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHG-KIGAIYAILVDIYGQYG 371 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 371 (514)
|...|.+.+++++|.++++.|.+. +.-....|...+..+.+.++.+.|..++.++++.-.. .......-.++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 566666666666666666666553 2334555666666666666666666666655543211 12334444445555555
Q ss_pred CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010236 372 RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 372 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
+.+.+..+|+......+ -....|+..++.-.++|+.+.+..+|++....++.|
T Consensus 1615 DaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555554322 123345555555555555555555555555554443
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=8.7e-06 Score=78.64 Aligned_cols=220 Identities=17% Similarity=0.147 Sum_probs=175.6
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010236 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328 (514)
Q Consensus 249 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 328 (514)
+|-...-..+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+..+ -+||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 4444455667788899999999999998875 577889999999999999999998887 47899999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 010236 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (514)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (514)
.+......-+++|.++.+..... +-..+.......++++++.+.|+.-.+.+. .-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhh
Confidence 98887777788888887765432 111222223346899999999988766542 3456788888888899999
Q ss_pred HHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010236 409 EQTVKVLQLMEPEGIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
+.|.+.|...... .| +...||.+-.+|.+.|+-.+|...+++..+.+.. +...|...+......|.+++|.+.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999988765 45 4678999999999999999999999999987743 666777778888899999999999999
Q ss_pred HHh
Q 010236 488 MES 490 (514)
Q Consensus 488 m~~ 490 (514)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 875
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00012 Score=73.57 Aligned_cols=138 Identities=13% Similarity=0.126 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010236 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 331 (514)
..+|..+..+-.+.|.+.+|.+-|-+.. |+..|..++....+.|.+++-.+++...++..-.|... +.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 3456666666666666666666553332 55566666666666677766666666555544444332 345666
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010236 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
|++.++..+.++++ ..|+......+.+-+...+.++.|.-+|..+ ..|..|...+...|+++.|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66666655544432 1233444444444444555555444444332 1244444444444444444
Q ss_pred HH
Q 010236 412 VK 413 (514)
Q Consensus 412 ~~ 413 (514)
..
T Consensus 1240 VD 1241 (1666)
T KOG0985|consen 1240 VD 1241 (1666)
T ss_pred HH
Confidence 43
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=4.9e-06 Score=78.17 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010236 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
|......|.-.|.-.|++++|+..|+..+... +-|..+|+.|...++...+.++|+..|.++++..... +.+...|.-
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgI 506 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGI 506 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhh
Confidence 33344444444444555555555555544421 1133444555555555555555555555554443221 222222333
Q ss_pred HHHhcCCcchHHHHHHH
Q 010236 366 IYGQYGRFRDPEECIAA 382 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~ 382 (514)
.|...|.+++|...|-.
T Consensus 507 S~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhHHHHHHHHHH
Confidence 34445555555544443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=1.7e-05 Score=81.89 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=114.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCF-GFN---PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYE 186 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 186 (514)
+...|...|......++.++|+++.++++.. ++. --...|.++++.-...|.-+...++|+++.+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3455666666666666677777766666542 111 112345555555555566666666666666531 1233556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcc
Q 010236 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKY 265 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 265 (514)
.|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.+.++.-... -.......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 6666666666666666666666554 22345556666666666666666666666665541110 122233334444556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010236 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP 320 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 320 (514)
|+.+.+..+|+...... +.-...|+..|..-.++|+.+.+..+|++....++.|
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66666666666655432 2234456666666666666666666666666655544
No 111
>PLN02789 farnesyltranstransferase
Probab=98.69 E-value=4.3e-05 Score=70.02 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=149.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhhHHH
Q 010236 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSR 168 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~ 168 (514)
.+++.+|...|+.+.. ..++.++|+.+..++++.. +.+..+|+....++.+.| ++++++.
T Consensus 33 ~~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 33 TPEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred CHHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHH
Confidence 3567777777776654 3467789999999988764 445567777767777777 5799999
Q ss_pred HHHHHHHcCCCcChHhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 010236 169 LLMVMEDMGICRNQETYEILLDYHVNAGRL--DDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
.++++.+... .+..+|+.....+.+.|+. ++++.+++++.+...+ +..+|+....++...|+++++++.++++++.
T Consensus 94 ~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 94 FAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999888655 4556787776666666653 6778888888877543 6777887778888888899999999998887
Q ss_pred CCCCCHHHHHHHHHHHhcc---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 010236 247 GLSLDRQIYNSIIDTFGKY---GE----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA----GDVAKALELFTQMQE 315 (514)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~---~~----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 315 (514)
+ +.+...|+.....+.+. |. .+++++...++.... +-|...|+-+...+... +...+|.+.+.+...
T Consensus 172 d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 172 D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 6 34666777666555443 22 245666665655542 23566777777666652 334557777766655
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 010236 316 QGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~ 334 (514)
.+ ..+......+++.|+.
T Consensus 250 ~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cc-CCcHHHHHHHHHHHHh
Confidence 33 2245566666666654
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=5e-06 Score=70.77 Aligned_cols=118 Identities=7% Similarity=0.072 Sum_probs=71.2
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 010236 370 YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF-GVAGK--YKEA 446 (514)
Q Consensus 370 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A 446 (514)
.++.+++...++.....+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344445555555555443 2455666666666666667777766666666653 33555566666543 45555 3667
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776665443 555666666666677777777777777665
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=0.00024 Score=71.44 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010236 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRW 296 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 296 (514)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+.-..++...|.+. +.+|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555554443221 244455556666666666666665555554444444433 245555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010236 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
|++.++..+..+++ .-|+......+.+-|...+.++.|.-+|..+ .-|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66655554443332 1345555555555555555555555444332 1234444444455555554
Q ss_pred HHHHH
Q 010236 377 EECIA 381 (514)
Q Consensus 377 ~~~~~ 381 (514)
.+.-+
T Consensus 1240 VD~aR 1244 (1666)
T KOG0985|consen 1240 VDAAR 1244 (1666)
T ss_pred HHHhh
Confidence 44433
No 114
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=8.9e-05 Score=74.33 Aligned_cols=184 Identities=10% Similarity=0.038 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
+...|+..|-+..+.. +.=...|..|...|+...+...|.+.|+...+.+ ..|...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555555555554432 1113456667777776667777777777776654 4456666777777777777777776633
Q ss_pred HHHHcCC-CcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 010236 172 VMEDMGI-CRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL 250 (514)
Q Consensus 172 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (514)
...+... ..-...|....-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.+....+ +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 3322211 011223444444566667777777777766655333 56666777777777777777777777666543 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+...-.-..-+.+..|.+.+|+..+....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222222233455667777776666554
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.63 E-value=0.00014 Score=72.90 Aligned_cols=395 Identities=12% Similarity=0.013 Sum_probs=228.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLR 155 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~ 155 (514)
..|..|...|+...+...|.+.|++.-+.+ ..+...+..+...|++..+++.|..+.-..-+.. +. -..-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 468889999998889999999999998875 4577889999999999999999999843332221 11 1122333455
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHccCCh
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK--VIGLYRDNGMW 233 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--ll~~~~~~g~~ 233 (514)
.|.+.++...|..-|+......+ .|...|..+..+|...|++..|+++|.+.... .|+. +|.. ..-.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 67788899999999999988665 67889999999999999999999999988765 3332 2222 22345678999
Q ss_pred HHHHHHHHHHHHcC------CCCCHHHHHHHHHHHhccCCHHHHHHHHHH-------HHHCCCCCCHHHHHHHHHHHHhc
Q 010236 234 KKAVGIVEEIREMG------LSLDRQIYNSIIDTFGKYGELVEALEVFEK-------MQQESIRPDIVTWNSLIRWHCKA 300 (514)
Q Consensus 234 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~-------m~~~~~~p~~~~~~~li~~~~~~ 300 (514)
.++...++..+... ...-..++-.+...+.-.|-...|..++++ .......-+...|..+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 99999988876531 001112222222222222322233333332 22221122333333333222110
Q ss_pred CChH--H----HHH-HHHHHHHCCCCC--------------------CHHHHHHHHHHHHc----c---C-CHHHHHHHH
Q 010236 301 GDVA--K----ALE-LFTQMQEQGFYP--------------------DPKIFITIISCLGE----L---G-KWDVIKKNF 345 (514)
Q Consensus 301 g~~~--~----A~~-~~~~m~~~g~~p--------------------~~~~~~~ll~~~~~----~---~-~~~~a~~~~ 345 (514)
-..+ . ... ++.+....+.-| +..++..+...|.+ . + +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 0 000 111111111111 12222222222221 1 1 122445555
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 010236 346 ENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP 425 (514)
Q Consensus 346 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 425 (514)
...++.. ..+...|+.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.+..+++.|...|...+... +.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-ch
Confidence 5554432 2345556655544 55566666666665544332 2345567777777777888888888888877653 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCcCHHHHHHHHHHHHcCCCcchHH
Q 010236 426 NLVMLNVLINAFGVAGKYKEALSVYHLMK----DIGISPDLVTYSTLMKAFIRAKKFHKVP 482 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (514)
|...|-.....-...|+.-++..+|..-- ..|--|+...|..........|+.++-+
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 66677666666667788888888877621 2344456655655555556666655443
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.61 E-value=0.00055 Score=64.33 Aligned_cols=389 Identities=12% Similarity=0.175 Sum_probs=231.5
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010236 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+-|..+|..||+-+... ..+++++.++++... ++-....|..-|..-.+..+++..+.+|.+....- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 67899999999988766 899999999999864 35567889999999999999999999999987653 467778877
Q ss_pred HHHHHhc-CCHHH----HHHHHHHH-HHcCCCCC-hhhHHHHHHH---------HHccCChHHHHHHHHHHHHcCCCCCH
Q 010236 189 LDYHVNA-GRLDD----TWLIINEM-RSKGFQLN-SFVYGKVIGL---------YRDNGMWKKAVGIVEEIREMGLSLDR 252 (514)
Q Consensus 189 i~~~~~~-g~~~~----A~~~~~~m-~~~g~~~~-~~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~ 252 (514)
+..--+. ++... ..+.|+-. .+.|+.+- ...|+..+.. +....+++...++|++++...+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7754432 22222 22333333 33444332 2334444432 23344566677778877754322111
Q ss_pred HHHHH------HHHHH-------hccCCHHHHHHHHHHHHH--CCCCCCH---------------HHHHHHHHHHHhcCC
Q 010236 253 QIYNS------IIDTF-------GKYGELVEALEVFEKMQQ--ESIRPDI---------------VTWNSLIRWHCKAGD 302 (514)
Q Consensus 253 ~~~~~------li~~~-------~~~~~~~~A~~~~~~m~~--~~~~p~~---------------~~~~~li~~~~~~g~ 302 (514)
..|+- =|+.. -+...+..|.++++++.. +|...+. ..|-.+|.- -+.+-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 22221 11111 123356677777777653 2321111 114333332 11111
Q ss_pred h---------HHHHHHHHHHH-HCCCCCCHHH-HHHHH----HHHHccCC-------HHHHHHHHHHHHhcCCCCcHHHH
Q 010236 303 V---------AKALELFTQMQ-EQGFYPDPKI-FITII----SCLGELGK-------WDVIKKNFENMKDRGHGKIGAIY 360 (514)
Q Consensus 303 ~---------~~A~~~~~~m~-~~g~~p~~~~-~~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 360 (514)
. ....-.+++.. -.+..|+... +...+ +.+...|+ -+++..+++.....-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222221 2233333211 11111 12333343 34555666665544333344444
Q ss_pred HHHHHHHHhcC---CcchHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHH
Q 010236 361 AILVDIYGQYG---RFRDPEECIAALKLEG-LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEP-NLVMLNVLIN 435 (514)
Q Consensus 361 ~~li~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~ 435 (514)
..+.+.--..- ..+.....++++.... ..|+ .+|..++..-.+..-++.|..+|.++.+.+..+ ++..+++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 44443322222 2455666666665543 2333 467788888888888999999999999987777 7778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 010236 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR--KARQILQS 505 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~ 505 (514)
-|| .++..-|.++|+.=.+. ...++..-...++-+.+.++-..+..+|++....++.||. .+|...++
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 777 47889999999975443 2334555667888889999999999999999998777765 45665543
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=2e-05 Score=67.02 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=129.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
|... ...-..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+.....+ +|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence 3444 55667777788888877777665432 245666777788899999999999999999987655 78889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
+|.+.|++++|..-|.+..+.-.. ++..++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.-.....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999988876333 66777888888888999999999998888764 3477777788888888999999
Q ss_pred HHHHHHHHH
Q 010236 271 ALEVFEKMQ 279 (514)
Q Consensus 271 A~~~~~~m~ 279 (514)
|.++...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 988876544
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=1.5e-05 Score=70.64 Aligned_cols=187 Identities=12% Similarity=0.035 Sum_probs=128.3
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--- 147 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--- 147 (514)
+.....+-.+...+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+... .+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchH
Confidence 3455567778888999999999999999998763 2222 4677888999999999999999999987542 122
Q ss_pred HhHHHHHHHHHhc--------CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010236 148 RFYNILLRGFLKK--------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 148 ~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
.++..+..++.+. |+.+.|.+.|+.+....+ .+...+..+..... ... .. ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 2455555555554 678889999988877533 12222222211100 000 00 011
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGL--SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
...+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678889999999999999887632 223568888999999999999999998888765
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.7e-05 Score=70.30 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=127.6
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcCh--HhH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQ--ETY 185 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 185 (514)
....+..+...+...|++++|...|+++.... +.+. .++..+..++.+.|++++|...++++.+..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45667778888899999999999999988753 2222 46677888899999999999999999875432111 145
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010236 186 EILLDYHVNA--------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 186 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
..+...+... |++++|.+.|+.+...... +...+..+..... .. ... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHHHH
Confidence 5555555544 6788888888888776222 2222222211100 00 000 011224
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESI--RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
+...|.+.|++++|...+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778999999999999999887621 223578889999999999999999999988764
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=8.9e-05 Score=63.16 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=139.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
|+-+.-.|++..++..-...... +.+...-..+-++|...|++..... ++.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 34444458888877766654433 2345555566677777777654433 222211 23333333333333333333
Q ss_pred hhH-HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010236 164 GLG-SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 164 ~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
++- .++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2344444443332333333334456777888888887776522 223333334455666777788888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010236 243 IREMGLSLDRQIYNSIIDTFG----KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 318 (514)
|.+.. +..+.+-|..++. ..+.+.+|.-+|++|.++ ..|+..+.+.+..++...|++++|..++++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 77653 4445554444443 344677788888888764 456777777777777788888888888887776543
Q ss_pred CCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Q 010236 319 YPDPKIFITIISCLGELGKWD-VIKKNFENMKD 350 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~ 350 (514)
. ++.+...++-+-...|... ...+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 5666665655555555443 33344444443
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=6.3e-05 Score=76.98 Aligned_cols=238 Identities=14% Similarity=0.089 Sum_probs=122.6
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.+...|..|+..+...+++++|.++.+...+. .|+... |-.+.-.+.+.++..++..+ . +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 34556777777777777777777777765554 344332 22222344555554444333 1 2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
+.......++.....+...|...+ -+...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222222233322233333333321 233455566666666666666666666666654 22556666666666666 66
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
++|.+++.+.... +...+++.++.++|.++.... |+ +++.-..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHH
Confidence 6666666655543 444456666666666665541 11 111222222222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010236 314 QEQ-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 314 ~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
... |..--..++..+-..|...++++++..+++.+++.. +.+.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 221 222223444455556666677777777777777665 334444555555554
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=3.7e-05 Score=74.45 Aligned_cols=217 Identities=14% Similarity=0.069 Sum_probs=168.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010236 183 ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTF 262 (514)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 262 (514)
..-..+...+...|-..+|..+|++.. .|..++.+|...|+..+|..+..+..++ +|+...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334556777888899999999998764 3556778899999999999998888874 78899999999988
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010236 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 263 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
....-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. +.-..+|-....+..+.+++..+.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8888899999998876543 11222223344789999999998876642 224567777777788899999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 343 KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
+.|....... +.+...||.+-.+|.+.++..+|...+.+..+-+. -+..+|...+....+.|.+++|.+.+.++.+
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9998887764 55678899999999999999999999999988774 3445576667777889999999999887765
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=0.00017 Score=73.99 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
.+..+..+|-+.|+.++|...|+++.+.. +-|+...+.+...|+.. ++++|.+++.++... |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44455555555566666666666555543 22445555555555555 555555555544432 33
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (514)
...++..+.++|.++....+ + +.+.-..+.+.+... |..--+.++-.+...|...++++++.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~--~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNS--D---------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred hhhcchHHHHHHHHHHhcCc--c---------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 34455555555555554322 1 111111222222221 22223344455555555666666666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 448 SVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.+++.+.+...+ |.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 666666654333 4444555555554
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=7.1e-05 Score=75.77 Aligned_cols=182 Identities=10% Similarity=0.053 Sum_probs=117.1
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010236 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+.+...+..|.....+.|.+++|..+++...+.. +.+......+...+.+.+++++|...+++.....+ -+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 4456677777777777888888888888777753 34455666777777778888888888877777554 455666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010236 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
..++.+.|++++|..+|++....+ +-+..++..+..++...|+.++|...|+...+.. .+....|+.++. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 777777888888888888877632 2246777777777777888888888888777653 334444444432 23
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhc
Q 010236 269 VEALEVFEKMQQE----SIRPDIVTWNSLIRWHCKA 300 (514)
Q Consensus 269 ~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~ 300 (514)
..-...++++.-. |..-.+.+...+|.-|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3334444444332 2223344555555555443
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0002 Score=61.07 Aligned_cols=250 Identities=15% Similarity=0.149 Sum_probs=133.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCH
Q 010236 119 IEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL 198 (514)
Q Consensus 119 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 198 (514)
++-+.-.|.+..++..-...... +.++..-..+-++|...|.+..... .++... .|.......+.......++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 44455567777666554443322 2344444555667777776544332 222211 23333333333333334444
Q ss_pred HHHHH-HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010236 199 DDTWL-IINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 199 ~~A~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
++-+. +.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33444443333232333333456777788888877766522 222222223445566677777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 010236 278 MQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 353 (514)
|.+. -+..|.+.|..++.+ .+.+..|.-+|++|-++ ..|++.+.+....++...+++++|..+++..+....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 7764 255566666666544 34577777777777653 567777777777777777777777777777776653
Q ss_pred CCcHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Q 010236 354 GKIGAIYAILVDIYGQYGRFRD-PEECIAALKL 385 (514)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~ 385 (514)
. ++.+...++-.-...|...+ ..+.+.+++.
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 34444444443334443333 3344444443
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.4e-05 Score=67.85 Aligned_cols=160 Identities=14% Similarity=0.041 Sum_probs=130.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
..-..+.-.|+-+....+........ +.|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 34455666677777777777654432 4456667778999999999999999999998765 789999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 010236 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (514)
+++.|..-|.+..+..+ -+....+.+.-.+.-.|+.+.|..++......+.. |+..-..+.......|+++.|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999888644 45677888888899999999999999999877533 77777888889999999999998876
Q ss_pred HHHH
Q 010236 242 EIRE 245 (514)
Q Consensus 242 ~~~~ 245 (514)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5443
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.2e-05 Score=68.50 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=73.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH-HhcCC--HHHH
Q 010236 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH-VNAGR--LDDT 201 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 201 (514)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655544 45666666666666667777777776666666543 3455555555543 45555 3667
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 010236 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG 247 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 247 (514)
.+++++..+.... +..++..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777766665433 55566666666666777777777777766653
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00013 Score=73.87 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=141.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010236 251 DRQIYNSIIDTFGKYGELVEAL-EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITII 329 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 329 (514)
+......+=.+.+.-|..++|- ++..+..+ ++..........+++.-...... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 4444455555566666666653 33333321 22222222233333322222222 2344577788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 010236 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (514)
....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++...... -+......+..++.+.|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchH
Confidence 88888888888888888888765 45566777788888888888888888888887643 34556667777888888888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
+|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+. ..|...-|+.++ ++...-..+++++.
T Consensus 172 ~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 172 QADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHcC
Confidence 8888888888743 334678888888888888888888888888764 223444444443 23334455666665
Q ss_pred hCC
Q 010236 490 SSG 492 (514)
Q Consensus 490 ~~g 492 (514)
-.+
T Consensus 244 ~~~ 246 (694)
T PRK15179 244 VEG 246 (694)
T ss_pred ccc
Confidence 433
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=8.8e-06 Score=65.45 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
+.++++..+. .|+ .+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555443 233 24455667777888888888888877664 446677778888888888888888888888775
Q ss_pred CCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 457 GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
... +...+..+..++.+.|++++|...|++..+ +.|+.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 433 667777788888888888888888888876 45543
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=1.4e-05 Score=64.31 Aligned_cols=93 Identities=12% Similarity=-0.046 Sum_probs=56.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.....+.+.|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34555566666666666666666553 3455566666666666666666666666666543 445556666666666666
Q ss_pred ChhhHHHHHHHHHHc
Q 010236 162 LLGLGSRLLMVMEDM 176 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~ 176 (514)
+.++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666553
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=2.5e-05 Score=62.41 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
....+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|...+++..+.+. .+...+..+..++.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence 34445556666677777777777766543 34556666677777777777777777777665532 24556666666777
Q ss_pred cCCCcchHHHHHHHHHhCCCCCCHHHHH
Q 010236 474 RAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 501 (514)
..|++++|...+++..+ +.|+.....
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccchHH
Confidence 77777777777777766 445554433
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.34 E-value=1e-06 Score=51.36 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=28.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS 111 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 111 (514)
++||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888876
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.29 E-value=4.9e-05 Score=60.71 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
.....+...+...|++++|.+.++.+...+ +.+...+..+...+.+.|++++|...++...+.+. .+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 334444555555666666666666555543 33455555555555566666666666665554432 3444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010236 193 VNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~ 211 (514)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5666666666666555544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00062 Score=63.35 Aligned_cols=110 Identities=13% Similarity=0.060 Sum_probs=54.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcC-hHhHHHHHHHHHhcCCHHHHH
Q 010236 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~ 202 (514)
..|++++|+..++.+...- +.|+..+......+.+.++.++|.+.++++.... |+ ...+..+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHH
Confidence 4455555555555554432 3334444444555555555555555555555432 22 344444555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 010236 203 LIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (514)
Q Consensus 203 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 237 (514)
.++++..... +-|+..|..|.++|...|+..++.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHH
Confidence 5555554432 224555555555555555544443
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0015 Score=55.49 Aligned_cols=190 Identities=12% Similarity=0.098 Sum_probs=126.5
Q ss_pred ccCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 010236 264 KYGELVEALEVFEKMQQE---S-IRPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKW 338 (514)
Q Consensus 264 ~~~~~~~A~~~~~~m~~~---~-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 338 (514)
...+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++... ++-+...-..-.--+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345678888888877643 3 444443 3445556666778888888888888764 322322222222234456788
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 010236 339 DVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 418 (514)
++|.++++.+++.+ +.|..++-.-+...-..|..-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888776 556666666666666677777787777777765 3567888888888888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCC
Q 010236 419 EPEGIEPNLVMLNVLINAFGVAG---KYKEALSVYHLMKDIG 457 (514)
Q Consensus 419 ~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 457 (514)
.-.. +.+...+..+...+.-.| +..-|.+.|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7652 334455556666555444 4566778888777753
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=0.0013 Score=61.39 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=100.9
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 010236 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GSMFCILANAYAQQGLCEQ 410 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 410 (514)
+...|+++.|+..+..+++.. +.|+..+....+.+.+.++.++|.+.++++.... |+ ...+-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 445677888888888876653 5667777777888888888888888888887663 43 4556667778888888888
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 411 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|..+++...... +-|...|..|..+|...|+..+|.....+ .+...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 888888777653 56778888888888888887777655443 34556777777777777766
Q ss_pred C
Q 010236 491 S 491 (514)
Q Consensus 491 ~ 491 (514)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.0017 Score=55.25 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=114.5
Q ss_pred cCCHHHHHHHHHHHHHC---C-CCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010236 90 LGDIDEAMALLAQMQAL---G-FHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++.+...- +.+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 35677777777776543 2 3344433 4455556667778888888888776642 333332222222234467777
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 010236 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
+|.++++.+.+.++ -|.+++---+...-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 88888887777653 45566665566666667766777777666654 45577777777777777777777777777776
Q ss_pred HcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHC
Q 010236 245 EMGLSLDRQIYNSIIDTFGKYG---ELVEALEVFEKMQQE 281 (514)
Q Consensus 245 ~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~ 281 (514)
-.. |.+...+..+.+.+.-.| +++.|.+.|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543 334444455555443333 455566666666554
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=3.3e-06 Score=48.70 Aligned_cols=33 Identities=36% Similarity=0.735 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP 110 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 110 (514)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=9.4e-05 Score=69.22 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010236 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
.+++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344444555566666666666666552 33 23345555555666666666666666442 33455555555566666
Q ss_pred CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
++.+.|+++.+++.+..+ -+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666665432 234466666666666666666666665553
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=5.3e-06 Score=48.22 Aligned_cols=33 Identities=39% Similarity=0.652 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 461 (514)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=5.6e-06 Score=46.54 Aligned_cols=31 Identities=32% Similarity=0.672 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF 108 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 108 (514)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00019 Score=67.15 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=65.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010236 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 188 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 267 (514)
|+..+...++++.|..+|+++.+.. +.....+.+.+...++..+|.+++.+.++.. +.+..........+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444555555555555555542 2233334555555555555666655555432 3345555555555666666
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 268 LVEALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
++.|+++.+++.+. .| +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666554 23 33466666666666666666666665543
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=9.3e-06 Score=46.79 Aligned_cols=32 Identities=34% Similarity=0.568 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.00039 Score=56.16 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010236 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
|...+...|++++|+..++...... .....+.....++.+.|+.++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3344444444444444444322211 1222333444444444444444444443
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.02 E-value=0.00039 Score=56.15 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HhHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL--RFYNIL 153 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~l 153 (514)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++. ...-.+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 455555555 3677777777777766652 222 122333445666677777777777777665422221 223335
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 207 (514)
...+...|++++|+..++...... .....+....+.+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666666666666665533221 2333455556666666666666666654
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.022 Score=57.30 Aligned_cols=223 Identities=16% Similarity=0.143 Sum_probs=124.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhh
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEA--LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (514)
...+++..|+....++.++ .||.. |..++.+ +.+.|+.++|..+++.....+. .|..|...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 4557777888877777665 45543 3333443 3477788888877777665543 377777777778888888888
Q ss_pred HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----------ChHH
Q 010236 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG----------MWKK 235 (514)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------~~~~ 235 (514)
|..+|++..... |+......+..+|++.+++.+-.+.--+|.+. .+-+...+=+++......- -..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 888888777643 55666666677777777665444333333322 1223333333333332210 1223
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 236 AVGIVEEIREMG-LSLDRQIYNSIIDTFGKYGELVEALEVF-EKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 236 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
|.+.++.+.+.+ -.-+..-.-.-...+...|++++|++++ ....+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444555555433 1111211222233345566777777777 33333322233344445556666677777777777777
Q ss_pred HHCC
Q 010236 314 QEQG 317 (514)
Q Consensus 314 ~~~g 317 (514)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 7654
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00026 Score=66.63 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=103.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHh
Q 010236 107 GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET 184 (514)
Q Consensus 107 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 184 (514)
+.+.+......+++.+....+.+.+..++-+.... ....-..|..++++.|.+.|..+.+.++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667777888888888888889999988888764 2223345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 010236 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 230 (514)
+|.||+.+.+.|++..|.++..+|...+.-.++.|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877777778887777777665
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00026 Score=52.09 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
|..+...+.+.|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4456666777788888888888776653 3344566667777777777777877777776654 3344566666677777
Q ss_pred cCChhhHHHHHHHHHH
Q 010236 160 KGLLGLGSRLLMVMED 175 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~ 175 (514)
.|+.+.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.90 E-value=0.024 Score=55.35 Aligned_cols=352 Identities=13% Similarity=0.116 Sum_probs=181.9
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCC--------ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 010236 109 HPSSISYASLIEALASVGRTLEADAIFQEMVC-FGFNP--------KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (514)
.|.+..|..+...-...-.++-|...|-+... .|++. +...-.+=+. +--|++++|+++|-.+..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 57788888888777766677777776655433 12110 0011111122 22478888888887766532
Q ss_pred cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH
Q 010236 180 RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL----NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIY 255 (514)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 255 (514)
..|..+.+.|++-...++++. .|-.. -...++.+...++....|++|.+.|......
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 245566667777666555543 11111 1356777777777777777777777654321
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010236 256 NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL 335 (514)
Q Consensus 256 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 335 (514)
...+.++.+..++++-..+-+.+.+ +....-.|...+.+.|.-++|.+.|-+-- . | ...+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHH
Confidence 2234555555555555555444433 34445556667777777777776654321 1 1 2344556666
Q ss_pred CCHHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CCCCCH----HHHHH
Q 010236 336 GKWDVIKKNFENMKDRGHGKI----------GAIYAILVDIYGQYGRFRDPEECIAALKLE----GLQPSG----SMFCI 397 (514)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~----~~~~~ 397 (514)
++|.+|.++-+...-..+..- ..-...-|..+.+.|+.-.|-+++.+|.++ +.++-. ....+
T Consensus 892 nQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 666666554333211000000 000112344555667666666666666432 222211 11111
Q ss_pred HH-HHH----------HhcCCHHHHHHHHHHhhhC---CC----CCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHC-
Q 010236 398 LA-NAY----------AQQGLCEQTVKVLQLMEPE---GI----EPNLVMLNVLI--NAFGVAGKYKEALSVYHLMKDI- 456 (514)
Q Consensus 398 li-~~~----------~~~g~~~~a~~~~~~~~~~---~~----~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~- 456 (514)
++ .-+ -+.|..++|..+++.-.-. .+ -.....|..+| .-....|.++.|++.--.+.+.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 11 111 1235555665544432211 00 11122333333 4445668888888765444432
Q ss_pred CCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 457 GISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 457 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
.+-|....|..+.-+.+....+...-+.|-++....--|+.
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a 1092 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA 1092 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH
Confidence 35566677777776666666676666666666654434443
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.89 E-value=0.00033 Score=65.93 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010236 183 ETYEILLDYHVNAGRLDDTWLIINEMRSK--GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260 (514)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 260 (514)
.....+++.+....+.+.+..++.+.+.. ....-+.|..++++.|.+.|..+.++.++..=...|+=||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 33334444444444444444444444332 1222233334555555555555555555555555555555555555555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010236 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (514)
Q Consensus 261 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (514)
.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555555555555554444433344444444444333
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.86 E-value=0.00022 Score=52.33 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGF-HPSSISYASLIEALASVG--------RTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666677888888888888888888 788888888888777543 23345666677776667777777777
Q ss_pred HHHHHHh
Q 010236 153 LLRGFLK 159 (514)
Q Consensus 153 li~~~~~ 159 (514)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.82 E-value=0.00034 Score=51.45 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.... +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334445555666666666666655442 223345555566666666666666666665554322 334555566666666
Q ss_pred CCcchHHHHHHHHHh
Q 010236 476 KKFHKVPEIYKQMES 490 (514)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (514)
|++++|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665544
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.81 E-value=0.00028 Score=51.80 Aligned_cols=76 Identities=21% Similarity=0.394 Sum_probs=42.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCC--------CcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 010236 434 INAFGVAGKYKEALSVYHLMKDIGI-SPDLVTYSTLMKAFIRAK--------KFHKVPEIYKQMESSGCTPDRKARQILQ 504 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 504 (514)
|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333444555555555555555555 555555555555544322 1224456667777767777777777777
Q ss_pred HHHHH
Q 010236 505 SALVV 509 (514)
Q Consensus 505 ~a~~~ 509 (514)
.++.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.6e-05 Score=43.74 Aligned_cols=29 Identities=52% Similarity=0.862 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.00092 Score=62.88 Aligned_cols=92 Identities=9% Similarity=-0.126 Sum_probs=68.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010236 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKY 443 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 443 (514)
...+...|++++|++.|+++...+. .+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4455667888888888888877643 356677777778888888888888888887753 33566777777888888888
Q ss_pred HHHHHHHHHHHHCC
Q 010236 444 KEALSVYHLMKDIG 457 (514)
Q Consensus 444 ~~A~~~~~~m~~~~ 457 (514)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887643
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.027 Score=49.70 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhH---HHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSS-ISY---ASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
....+.+.|++++|++.|+++... .|+. ... -.++.++.+.+++++|...+++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 445556789999999999998876 3332 222 345677788888999999888888753
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0015 Score=50.58 Aligned_cols=96 Identities=17% Similarity=0.019 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHhHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFN--PKLRFYNIL 153 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~l 153 (514)
+-.+...+.+.|++++|.+.|+.+.+.. |+ ...+..+..++.+.|+++.|...|+.+...... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4456666677777777777777776542 22 234555667777777777777777776654211 113445566
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
..++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 666666777777777777666653
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.73 E-value=0.068 Score=54.01 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=135.3
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 80 YNKSIQYC--CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 80 ~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
|..++.++ .|.|+.++|..+++.....+. .|..|...+-..|.+.++.++|..+|+..... .|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 44555655 688999999999998877653 38889999999999999999999999999875 47788888888999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC-C---------HHHHHHHHHHHHHcC-CCCChhhHHHHHHH
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-R---------LDDTWLIINEMRSKG-FQLNSFVYGKVIGL 226 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~ 226 (514)
.+.+++.+-.++--++-+. .+.+...+=+++..+.+.- . ..-|.+.++.+.+.+ .--+..-...-...
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~i 199 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLI 199 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHH
Confidence 9988776544433333332 2223434334444443321 1 223555666666554 21122223333445
Q ss_pred HHccCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010236 227 YRDNGMWKKAVGIVE-EIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
+...|++++|.+++. ...+.-...+...-+.-++.+...+++.+..++-.++..+|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 667888999999984 44444445566666777888889999999999888888875
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.00072 Score=61.24 Aligned_cols=131 Identities=10% Similarity=0.118 Sum_probs=79.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA-LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
.+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777777777777776543 2223333333333 22245566677777777664 35566677777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRN---QETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 2111 236777777777777777777777666654
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=0.00011 Score=52.99 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010236 90 LGDIDEAMALLAQMQALGFH-PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
+|+++.|+.+|+++.+.... ++...+..+..++.+.|++++|.++++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777665311 1334445567777777777777777766 2221 1222333344666677777777777
Q ss_pred HHHH
Q 010236 169 LLMV 172 (514)
Q Consensus 169 ~~~~ 172 (514)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=8.6e-05 Score=53.45 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHH
Q 010236 405 QGLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPE 483 (514)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 483 (514)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|.+++++ .+.+.. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666554211 1233444456666666666666666655 221111 22333344556666666666666
Q ss_pred HHHH
Q 010236 484 IYKQ 487 (514)
Q Consensus 484 ~~~~ 487 (514)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.0016 Score=61.32 Aligned_cols=92 Identities=16% Similarity=0.030 Sum_probs=71.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
...+...|++++|++.|+++.+.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445567788888888888888764 4466777888888888888888888888888764 44666777788888888888
Q ss_pred hhHHHHHHHHHHcC
Q 010236 164 GLGSRLLMVMEDMG 177 (514)
Q Consensus 164 ~~A~~~~~~~~~~~ 177 (514)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887754
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00087 Score=60.70 Aligned_cols=145 Identities=6% Similarity=0.036 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010236 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ-YGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 401 (514)
.+|..++...-+.+..+.|..+|.++.+.+ ..+..+|-....+-.+ .++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 456777777777778888888888887543 2334444444444333 45555588888887765 34566777777787
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010236 402 YAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
+...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+. -|+...+..+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 88888888888888887765 22222 47777777777788888888888777763 23333344444333
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.0013 Score=52.26 Aligned_cols=93 Identities=10% Similarity=-0.072 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.+...+...|++++|..+|+.+.... +-+..-|..|...+-..|++++|+..|....... +.|...+-.+..++.+.|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 34455667788888888888877664 3456667777777778888888888888887766 466777777788888888
Q ss_pred ChhhHHHHHHHHHHc
Q 010236 162 LLGLGSRLLMVMEDM 176 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~ 176 (514)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888776653
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0024 Score=53.27 Aligned_cols=131 Identities=14% Similarity=0.027 Sum_probs=87.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
....|..+...+.+.|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677788888889999999999999886532222 4578888889999999999999999988754 3456667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
...+...|+...+..-++.... .+++|.+++++.... ++..+..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 7777777776554443333221 245666666666654 33335555555544443
No 166
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0021 Score=49.76 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPN----LVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PDLVTYSTL 468 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l 468 (514)
+..+...+...|++++|.+.|..+.... |+ ...+..+..++.+.|++++|.+.|+.+...... .....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444555555555555555554431 11 233444555555556666666666655543211 113345555
Q ss_pred HHHHHcCCCcchHHHHHHHHHh
Q 010236 469 MKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..++.+.|+.++|.+.++++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHH
Confidence 5555556666666666665555
No 167
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.079 Score=52.50 Aligned_cols=339 Identities=14% Similarity=0.100 Sum_probs=186.3
Q ss_pred HCCCCCCHhhHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh---hhHHHHHHHHHHc
Q 010236 105 ALGFHPSSISYA-----SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDM 176 (514)
Q Consensus 105 ~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~ 176 (514)
.-|++.+..-|. .+|+-+...+.+..|+++-..+...-... ..+|.....-+.+..+. +-+..+-+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555555443 45666777788888888877765321111 56677777777665432 2222222233221
Q ss_pred CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 010236 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ----LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR 252 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 252 (514)
. ..-.+|..+..-....|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.+. .+.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 2 34457778888888889988888877643222110 12222334444555566666666655555442 111
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--HHHH----HCCCCCCHHHHH
Q 010236 253 QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELF--TQMQ----EQGFYPDPKIFI 326 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~--~~m~----~~g~~p~~~~~~ 326 (514)
..+... ..+...|..+|.+..+.. |..+ +-..| +.++-.+++..| +... ..|..|+. .
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 111111 123445666666654421 1111 11222 222222222211 1110 12333333 2
Q ss_pred HHHHHHHccCCHH---HH-------HHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010236 327 TIISCLGELGKWD---VI-------KKNFENMK-DRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 327 ~ll~~~~~~~~~~---~a-------~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
.....+.+..... ++ .++.+.+. +.+......+.+--+.-+...|+..+|.++-.+.+ -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 3334444433311 11 11222222 12323344455566666778899999988887765 5788889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
-.-+.+++..+++++-+++-+... ...-|...+.+|.+.|+.++|.+++-+.... .-...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHh
Confidence 888999999999998887766654 2345777889999999999999998765321 1456777888
Q ss_pred CCcchHHHH
Q 010236 476 KKFHKVPEI 484 (514)
Q Consensus 476 g~~~~a~~~ 484 (514)
|++.+|.++
T Consensus 784 ~~~~eAad~ 792 (829)
T KOG2280|consen 784 GDVKEAADL 792 (829)
T ss_pred ccHHHHHHH
Confidence 888777654
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.036 Score=50.49 Aligned_cols=24 Identities=13% Similarity=0.338 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 010236 292 SLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
.+...+.+.|++++|.++|++...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334445555555555555555443
No 169
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.64 E-value=0.0038 Score=49.70 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
+..-+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|+..|.......+. |+..+..+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence 3444567777888888777776653 335556667777777778888888888877766543 66777777777778888
Q ss_pred cchHHHHHHHHHhC
Q 010236 478 FHKVPEIYKQMESS 491 (514)
Q Consensus 478 ~~~a~~~~~~m~~~ 491 (514)
.+.|.+.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877777653
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.075 Score=52.14 Aligned_cols=120 Identities=11% Similarity=-0.013 Sum_probs=65.2
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH----------HHHHhcCChHHHHHHHHHHHHcC
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLI----------EALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li----------~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
..|.+..|..+...-.+.-.++-|...|-+.... +......-+- ..-+--|++++|.++|-++-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 3466778887777767777777777777655432 2221111111 11223488999999987776543
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc----ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010236 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR----NQETYEILLDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 207 (514)
..|..+.+.|++-...++++. -|-.. -...|+.+...+.....+++|.+.|..
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555666666555444432 11111 123555555555555555555555543
No 171
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00083 Score=58.64 Aligned_cols=101 Identities=20% Similarity=0.224 Sum_probs=65.2
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010236 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKE 445 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (514)
-..+.+++++|+..|.+.+.... -|.+.|..-..+|.+.|.++.|++-.+...... +--..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 34566777777777777776542 355666666777777777777777776666542 2223567777777777777777
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHH
Q 010236 446 ALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
|++.|++..+ +.|+-.+|..=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 7777777666 4555555544443
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.022 Score=51.84 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=62.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS-----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
..|+...+.|-..|++++|.+.|.+..+.....+ ...|......|.+ .++++|.+.+++.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH--------------
Confidence 4577777777777888888877776543210000 1122222222222 2444444444433
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHH
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGL 226 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~ 226 (514)
+..|...|++..|-+++..+- ..|-.. |++++|++.|.+..+. +... -...+..+...
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344556666655555444433 234444 5666666666655332 1000 01223334444
Q ss_pred HHccCChHHHHHHHHHHHH
Q 010236 227 YRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~ 245 (514)
+.+.|++++|.++|++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555443
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0047 Score=51.54 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010236 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPS--GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344445555555555555555555544322221 2345555555666666666666666655532 2234444455555
Q ss_pred HHHcCC
Q 010236 437 FGVAGK 442 (514)
Q Consensus 437 ~~~~g~ 442 (514)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 555554
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.0013 Score=57.49 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHH
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGS 167 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 167 (514)
.+.++|++|+..|.+.++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 44445555555555554442 3344444444455555555555555444444432 122334444555555555555555
Q ss_pred HHHHHHHH
Q 010236 168 RLLMVMED 175 (514)
Q Consensus 168 ~~~~~~~~ 175 (514)
+.|++..+
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55444444
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.002 Score=53.76 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=61.1
Q ss_pred CCCHhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH
Q 010236 109 HPSSISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE 183 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 183 (514)
..+-.+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3466677777777764 36677777788888888988899999988887754 2221 001111110
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 184 TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
. -.-.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 113 ------~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 ------M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ------c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 011223445566666666666666666666666555444
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0021 Score=53.45 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
..|..+...+...|++++|...|+........+ ...++..+...+...|++++|.+.+++...... ....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 344555555556666666666666665432111 123555566666666666666666666655321 22334444444
Q ss_pred HHH-------hcCCHHHHHHHH
Q 010236 191 YHV-------NAGRLDDTWLII 205 (514)
Q Consensus 191 ~~~-------~~g~~~~A~~~~ 205 (514)
.+. ..|+++.|+..+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHH
Confidence 444 445555444333
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.54 E-value=0.0028 Score=52.94 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----------------cCCHHHHHHH
Q 010236 391 SGSMFCILANAYAQ-----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----------------AGKYKEALSV 449 (514)
Q Consensus 391 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----------------~g~~~~A~~~ 449 (514)
+..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|++.+=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 33444444444432 24555555555555555655666666665555432 1234667888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010236 450 YHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
+++|...|+.||..++..++..+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 888888888888888888888876555
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.004 Score=51.75 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=72.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
....|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|+..+++..... +.....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45667888888889999999999999997663222 23578889999999999999999999998753 3445566666
Q ss_pred HHHHH-------hcCChhhHHHHHHH
Q 010236 154 LRGFL-------KKGLLGLGSRLLMV 172 (514)
Q Consensus 154 i~~~~-------~~g~~~~A~~~~~~ 172 (514)
...+. +.|+++.|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 66776655554443
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.46 E-value=0.068 Score=47.21 Aligned_cols=73 Identities=10% Similarity=-0.066 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH---HHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFY---NILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
....+...|++++|.+.|+.+...- +-+.... -.++.++.+.+++++|...+++..+..+......|...+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3444455677777777777776643 1112221 23455666777777777777777665433333333333333
No 180
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.0024 Score=58.13 Aligned_cols=265 Identities=14% Similarity=0.079 Sum_probs=163.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHH--HH--cCCC-CChHhHHHHHH
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEM--VC--FGFN-PKLRFYNILLR 155 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~--~~--~g~~-~~~~~~~~li~ 155 (514)
.-+|+.|+....+.+|+...+-|. -|. .+|..+.++|.-.+++++|++....= +. .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 357999999999999999999873 343 45777788888999999999876421 11 1100 11112223344
Q ss_pred HHHhcCChhhHHHHHHH----HHHcCC-CcChHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 010236 156 GFLKKGLLGLGSRLLMV----MEDMGI-CRNQETYEILLDYHVNAGR--------------------LDDTWLIINEMRS 210 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~----~~~~~~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 210 (514)
.+--.|.+++|...-.+ ..+.|- ......+..+...|...|+ ++.|.+.|.+=.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 44445666666543222 122110 0122344445666654432 2334444443221
Q ss_pred ----cCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010236 211 ----KGF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE----MGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (514)
Q Consensus 211 ----~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 280 (514)
.|- -.--..|..|.+.|.-.|+++.|+..++.-+. .|-. .....+..+.+++.-.|+++.|.+.|.....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 01224566677777788999999988875432 2211 2245677788888899999999999876432
Q ss_pred ----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 281 ----ES-IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE----Q-GFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 281 ----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
.| ......+..+|.+.|.-..++++|+.++.+-.. . ...-....+.++..++...|..++|..+.+..++
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 122445667788888888899999988876432 1 1223456788899999999999999887766554
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00056 Score=46.32 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=26.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 435 NAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..+.+.|++++|.+.|+++.+.... +...+..+..++.+.|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555544322 344455555555555555555555555543
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.017 Score=44.27 Aligned_cols=104 Identities=19% Similarity=0.158 Sum_probs=63.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHH
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRG 156 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~ 156 (514)
+...+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44556667888888888888877765433 3345566677777888888888887776642 32 1222223335
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
+...|+.++|.+.+-.... ++...|.--|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 5566777777776655444 3333444444444
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.0095 Score=58.75 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 428 VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444555555555555555533 3444555555555555555555555555544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00073 Score=46.23 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=40.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
.+.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+.... |+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHH
Confidence 45677777777777776663 3466667777777777777777777777777653 4433333
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.38 E-value=0.0006 Score=46.68 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=24.5
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 404 QQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+.|++++|.++|+++.... +-+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555555554432 22444444555555555555555555555544
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.013 Score=57.86 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--------CcchHHHHHHHHH
Q 010236 318 FYPDPKIFITIISCLGEL-----GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG--------RFRDPEECIAALK 384 (514)
Q Consensus 318 ~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~ 384 (514)
.+.+...|...+.+.... ++.+.|..+|+++.+.. +.....+..+..+|.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344555566555553322 12456666666666654 223334443333332211 1223333333332
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 010236 385 LE-GLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV 463 (514)
Q Consensus 385 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 463 (514)
.. ....+...|.++.-.....|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 22 12334567777766677789999999999999886 4788889999999999999999999999988754 4444
Q ss_pred HH
Q 010236 464 TY 465 (514)
Q Consensus 464 ~~ 465 (514)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.35 E-value=0.00076 Score=46.31 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-CcchHHHHHHHHHh
Q 010236 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMES 490 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 490 (514)
..+|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445566666666666666666666666654322 4455666666666666 46666666665554
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.31 E-value=0.066 Score=43.56 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---CCCHHHH
Q 010236 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL---QPSGSMF 395 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~ 395 (514)
.|+...-..+..+..+.|+..+|...|.+...--+..|......+.++....+++.+|...++++.+.+. .||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 4555555566666667777777777776666555555666666666666667777777777776665432 3333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
-.+.+.+...|.+.+|...|+..... -|+...-......+.++|+.++|..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34566777777777777777777765 444444334455566777776665544444
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.28 E-value=0.075 Score=45.63 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=39.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
....+.+.|++++|++.|+.+...- -+--....-.++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445567788888888888887752 1112345566777888888888888888887764
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.023 Score=50.17 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCcCHHHHH
Q 010236 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA---GKYKEALSVYHLMKDIGISPDLVTYS 466 (514)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 466 (514)
-|...|-.|...|...|++..|..-|.+..+.. .+|...+..+..++..+ ....++.++|+++...... |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 355667777777777777777777776666542 44555555555555433 2345666677777665433 555666
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHh
Q 010236 467 TLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 467 ~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|...+...|++.+|...|+.|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 666667777777777777777766
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.16 Score=46.88 Aligned_cols=279 Identities=11% Similarity=-0.007 Sum_probs=135.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
....-..+.+..++.+|+..+....+.. +.+..-|..-...+...|++++|.--.+.-++.. +-....+.-.-+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 3445556777888999999999988875 3445556666667777778887776665554421 1112233333344444
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHH-HHHHccCChHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF-QLNSFVYGKVI-GLYRDNGMWKKAV 237 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll-~~~~~~g~~~~a~ 237 (514)
.++..+|.+.++.-. .+ ....++..++....... +|.-.++..+- .++.-.|++++|.
T Consensus 130 ~~~~i~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444443110 00 01111111111111111 11122222221 2334455555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHhcCC
Q 010236 238 GIVEEIREMGLSLDRQIYNSIID--TFGKYGELVEALEVFEKMQQESIRPDIVT-------------WNSLIRWHCKAGD 302 (514)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------------~~~li~~~~~~g~ 302 (514)
+.--..++.+ ..+ .+...++ .+.-.++.+.|...|++....+ |+... |..=.+-..+.|+
T Consensus 190 ~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 190 SEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 5544444432 111 1111121 1223344555555555544331 22111 1111223456777
Q ss_pred hHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHH
Q 010236 303 VAKALELFTQMQEQ---GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (514)
Q Consensus 303 ~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (514)
+..|.+.|.+.+.. ...|+...|........+.|+.++|+.--+...+.+ +.-...+..-..++...+.+++|.+-
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777643 234445556556666667777777776666665543 11122333333444556677777777
Q ss_pred HHHHHHc
Q 010236 380 IAALKLE 386 (514)
Q Consensus 380 ~~~~~~~ 386 (514)
++...+.
T Consensus 344 ~~~a~q~ 350 (486)
T KOG0550|consen 344 YEKAMQL 350 (486)
T ss_pred HHHHHhh
Confidence 7766544
No 192
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.23 E-value=0.18 Score=47.04 Aligned_cols=417 Identities=11% Similarity=0.103 Sum_probs=230.2
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
-|..+|-.||..|..+|.+++..+++++|..- ++--...|..-+.+=...++++....+|.+.+... .+...|..-+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 46788999999999999999999999999853 23335578888887778889999999999988764 4566777777
Q ss_pred HHHHhcCChh------hHHHHHHHHHH-cCCCcC-hHhHHHHHHHHH---hcCC------HHHHHHHHHHHHHcCCCCCh
Q 010236 155 RGFLKKGLLG------LGSRLLMVMED-MGICRN-QETYEILLDYHV---NAGR------LDDTWLIINEMRSKGFQLNS 217 (514)
Q Consensus 155 ~~~~~~g~~~------~A~~~~~~~~~-~~~~~~-~~~~~~li~~~~---~~g~------~~~A~~~~~~m~~~g~~~~~ 217 (514)
.-.-+.+..- ...+.|+-... .++.|- ...|+..+..+- ..|. .+...+.+.+|+.-.+.-=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 6555543221 12334444333 234333 345666555432 2333 44555566666543221101
Q ss_pred hhHHH------HHH-HHH------ccCChHHHHHHHHHHHH--cCCC----CCHHH-----------HHHHHHHHhccC-
Q 010236 218 FVYGK------VIG-LYR------DNGMWKKAVGIVEEIRE--MGLS----LDRQI-----------YNSIIDTFGKYG- 266 (514)
Q Consensus 218 ~~~~~------ll~-~~~------~~g~~~~a~~~~~~~~~--~~~~----~~~~~-----------~~~li~~~~~~~- 266 (514)
..|+. =++ +-+ ..--+-.|.+.++++.. .|+. .+..+ |-.+|+.-...|
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 11111 111 000 11224455666665542 2221 11122 222333221111
Q ss_pred ----C-HH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 010236 267 ----E-LV-EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDV 340 (514)
Q Consensus 267 ----~-~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 340 (514)
+ .. ..--++++...- +.-....|----.-+...++-+.|+.....-.. ..|+... .+-..|.-.++-+.
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~spsL~~--~lse~yel~nd~e~ 351 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPSLTM--FLSEYYELVNDEEA 351 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCchhe--eHHHHHhhcccHHH
Confidence 1 11 111222332221 111233333333334455666666665544332 1222100 01111111111111
Q ss_pred HHHHHHHH-----------------------------HhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC-CCC
Q 010236 341 IKKNFENM-----------------------------KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG-LQP 390 (514)
Q Consensus 341 a~~~~~~~-----------------------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 390 (514)
....|+.. .-.....-..+|...++...+..-++.|..+|-+..+.+ +.+
T Consensus 352 v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h 431 (660)
T COG5107 352 VYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH 431 (660)
T ss_pred HhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc
Confidence 11111110 000001124566777777778888899999999998888 567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHH
Q 010236 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-NVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYST 467 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ 467 (514)
+..++++++..++ .|+...|.++|+.-... -||...| +-.+.-+...++-+.|..+|+...+. +..+ ...|..
T Consensus 432 ~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~k 507 (660)
T COG5107 432 HVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDK 507 (660)
T ss_pred ceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHH
Confidence 7888888887664 57888899998875554 3444433 55666777889999999999966543 2223 467889
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
++..-..-|+...+..+-++|.+ +-|...+......
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~S 543 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHH
Confidence 99888889999888888888887 5666655444443
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.22 E-value=0.084 Score=42.99 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-cChHhHHHH
Q 010236 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-RNQETYEIL 188 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l 188 (514)
|++.--..+..++.+.|+..+|...|++...--+..|....-.+.++....+++..|...++.+-+.... .+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444455555555555555555555544323334444444455555555555555555554443210 112223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 010236 189 LDYHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~ 210 (514)
.+.+...|.+.+|...|+...+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4444444444444444444443
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.18 E-value=0.033 Score=42.69 Aligned_cols=93 Identities=20% Similarity=0.076 Sum_probs=57.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc--ChHhHHHHHHHHH
Q 010236 118 LIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR--NQETYEILLDYHV 193 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 193 (514)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|+......+.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888887775543 3345566677777788888888887776542210 1122222334556
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRS 210 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~ 210 (514)
..|+.++|++.+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66777777776655543
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0022 Score=43.29 Aligned_cols=58 Identities=24% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
+...+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777664 335566667777777777777777777777654
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.14 E-value=0.0021 Score=44.02 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVC 140 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 140 (514)
+..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666777777777777777766653 334556666666666666 56777776666654
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.08 E-value=0.007 Score=55.20 Aligned_cols=131 Identities=17% Similarity=0.022 Sum_probs=74.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh----cCC-CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc----CC-CCCHH
Q 010236 324 IFITIISCLGELGKWDVIKKNFENMKD----RGH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKLE----GL-QPSGS 393 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 393 (514)
.|..+...|.-.|+++.|+..++.-+. .|- ......+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 444555555566777777766554332 121 112345666777777778888877777654321 11 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPE----G-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
+.-+|...|.-..++++|+.++.+-... + ..-....+.+|..+|...|..+.|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445666666666777777766543221 0 11234567778888888888888777666543
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.12 Score=44.45 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=9.1
Q ss_pred HHHHHccCChHHHHHHHHHHHH
Q 010236 224 IGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~ 245 (514)
+.++.+.|+++.|...+++.++
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 199
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.1 Score=48.09 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=33.2
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHhcC
Q 010236 285 PDIVTWNSLI-RWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS--CLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 285 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
|.-.+|..+- .++.-.|++++|...--...+.. ....+..+++ ++.-.++.+.+...|.+.++.+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 3334444332 33455677777776665555432 1122223333 2334556777777777776654
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.02 E-value=0.0064 Score=49.14 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH-----hCCCCCCHHHHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQIL 503 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~l 503 (514)
...++..+...|++++|.++.+.+....+- |...|..++.+|...|+..+|.+.|+++. +.|+.|+..+....
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 344555555666666666666666654322 55566666666666666666666666654 23666666555443
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.065 Score=47.41 Aligned_cols=101 Identities=9% Similarity=-0.023 Sum_probs=57.1
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCChhhH
Q 010236 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA---GRLDDTWLIINEMRSKGFQLNSFVY 220 (514)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~ 220 (514)
+-|...|-.|...|...|+++.|...|....+... +|...+..+..++... ....++..+|+++...... |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 45566666666666666666666666666655432 3444454444444332 2344566666666655322 44444
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc
Q 010236 221 GKVIGLYRDNGMWKKAVGIVEEIREM 246 (514)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 246 (514)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555666666666666666666665
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.19 Score=43.38 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=87.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHH-----
Q 010236 325 FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILA----- 399 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----- 399 (514)
...++..+...+.+......+.++++...+.++.....|...-.+.|+.+.|...|++..+..-+.+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555566666777777777777776666677777777777778888888888887766544344444444333
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
..|.-.+++..|...+.+..... +.|....|.-.-+..-.|+..+|++.++.|.+..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 23445567888888887777653 3355555555555556788999999999988753
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.99 E-value=0.0043 Score=43.07 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=28.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|.+.+++++|.++++.+...++. +...|.....++.+.|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555554322 444455555555555555555555555554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.02 Score=51.03 Aligned_cols=96 Identities=15% Similarity=0.012 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNI 152 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ 152 (514)
.|+..+..+.+.|++++|+..|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.- -+.....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555555556667777777777777765 3432 456666777777777777777777776532 0112333344
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+...+...|+.+.|.++|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455566667777777777666653
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.86 E-value=0.027 Score=50.18 Aligned_cols=100 Identities=10% Similarity=-0.016 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PDLVTYSTL 468 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l 468 (514)
|...+....+.|++++|...|+.+.+. -|+. ..+..+..+|...|++++|...|+.+.+.-.. .....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 433333334556777777777766654 2332 34556667777777777777777777643111 123344455
Q ss_pred HHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 469 MKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 469 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
...+...|+.++|.+++++..+ ..|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 5666677777777777777766 345443
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.6 Score=46.63 Aligned_cols=332 Identities=14% Similarity=0.075 Sum_probs=190.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT--LEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
-..+|+-+...+.|..|+++...+...-..- ...|.....-+.+..+. +++.+..++=...-. -....|..+.+-.
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHH
Confidence 3557888888899999999988876432222 56677777777665332 223333332222212 3345677777777
Q ss_pred HhcCChhhHHHHHHHHHHcCCC----cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010236 158 LKKGLLGLGSRLLMVMEDMGIC----RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
..+|+.+.|..+++.=...+-. .+..-+...+.-..+.|+.+-...++..+...- +...+.. ...+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~------~l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFM------TLRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHH------HHHhc
Confidence 7899999999887653322110 122234455666677777777777776665431 1111111 12234
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH--HHHH----HCCCCCCHHHHHHHHHHHHhcCCh---H
Q 010236 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF--EKMQ----QESIRPDIVTWNSLIRWHCKAGDV---A 304 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~--~~m~----~~~~~p~~~~~~~li~~~~~~g~~---~ 304 (514)
..|..+|.+..+.. +..+ +-+.|- .++-..+...| +... ..+..|+ .....+.+++.... +
T Consensus 589 p~a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred hhhhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 55666666665532 1111 112222 22222222222 1110 1122233 23344445544431 1
Q ss_pred HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010236 305 KA-------LELFTQMQE-QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 305 ~A-------~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
+| +.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHH
Confidence 11 222222221 2333344445555666777888888887765543 46677888888999999999887
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
+++-+..+. +.-|.-.+.+|.+.|+.++|.+++.+.... .....+|.+.|++.+|.++--
T Consensus 735 ekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 735 EKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 777665432 345778899999999999999998876432 157788999999999987643
No 207
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.26 Score=42.19 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=104.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|.....+|....++++|...+.+..+.- ..|. ++-.. ...++.|..+.+++.+. +--+..|+-....|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennr-slfhA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNR-SLFHA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhcc-cHHHH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 456677778888888888888777766321 1122 11111 22345666666666553 23344566677788
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHccCC
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK---G--FQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~~~~~~~~~ll~~~~~~g~ 232 (514)
..+|..+.|-..+++.-+. ..+.++++|+++|.+.... + ...-...+...-+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888888777776542 2344555666666554321 0 00011223333344555555
Q ss_pred hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChH
Q 010236 233 WKKAVGIVEEIREM----GLSLD-RQIYNSIIDTFGKYGELVEALEVFEKMQQE---SIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 233 ~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+++|-..+.+-... .-.++ -..|-..|-.|.-..++..|.+.++.-.+. .-+-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 55554443332111 00111 122334444455555666666666663322 1122445555566554 345555
Q ss_pred HHHHH
Q 010236 305 KALEL 309 (514)
Q Consensus 305 ~A~~~ 309 (514)
++.++
T Consensus 245 ~~~kv 249 (308)
T KOG1585|consen 245 EIKKV 249 (308)
T ss_pred HHHHH
Confidence 54433
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.77 E-value=0.47 Score=44.23 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=48.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010236 292 SLIRWHCKAGDVAKALELFTQMQEQG---FYPDPKIFITIISCLGE---LGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
.++-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|.+++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 45556888888888888888887641 11122222233344555 7788888888877665555677777777766
Q ss_pred HHH
Q 010236 366 IYG 368 (514)
Q Consensus 366 ~~~ 368 (514)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 653
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.48 Score=43.67 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=66.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010236 325 FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQ 404 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 404 (514)
.+..+.-+...|+...|.++-.+. . -|+...|...+.+++..+++++-..+... +-++.-|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 344455555666666666554433 2 35666777777777777777766665432 1123557777777777
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 405 QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 405 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
.|+..+|..+...+. +..-+..|.++|++.+|.+.--
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 888777777776622 2345667777888877776543
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.013 Score=47.42 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH-----HcCCCcChHh
Q 010236 116 ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME-----DMGICRNQET 184 (514)
Q Consensus 116 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 184 (514)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.++|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555555555555555555543 3455555555555555555555555555543 2355555443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.66 E-value=0.016 Score=40.07 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
..|.+.+++++|+++++.+...+ +.+...|......+...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45666777777777777777664 4455666666777777777777777777776653
No 212
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.65 E-value=0.6 Score=43.85 Aligned_cols=409 Identities=12% Similarity=0.128 Sum_probs=216.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCChHHHHHHHHHHHHc--CCCC--------
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA--SVGRTLEADAIFQEMVCF--GFNP-------- 145 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~--g~~~-------- 145 (514)
+.-+.+|++|.. .+.+.....+....+. .| ...|..+..++. +.+.+.+|.+.+..-... +..+
T Consensus 47 vl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 47 VLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 345667777765 4455555555555443 22 334555554433 667788888777655443 2221
Q ss_pred ----ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CcChHhHHHHHHHHHhc--------CC-------HHHHH
Q 010236 146 ----KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGI----CRNQETYEILLDYHVNA--------GR-------LDDTW 202 (514)
Q Consensus 146 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~--------g~-------~~~A~ 202 (514)
|...-+..++++...|++.+++.+++++...=. .-+..+|+.++-.+.+. .. ++-+.
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 222335566777788888888888888765433 25777777755444332 11 12222
Q ss_pred HHHHHHHHc------CCCCChhhHHHHHHHHHcc--CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 010236 203 LIINEMRSK------GFQLNSFVYGKVIGLYRDN--GMWKKAVGIVEEIREMGLSLDR-QIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 203 ~~~~~m~~~------g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~ 273 (514)
-..++|... .+-|....+..++....-. .+..--.++++.....-+.|+- -+...++..+.+ +.+++..
T Consensus 203 fY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 203 FYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 222233221 1233333333333322211 1222233344444443344443 233445555544 5556665
Q ss_pred HHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHH-cc---CCH
Q 010236 274 VFEKMQQESIR----PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT-------IISCLG-EL---GKW 338 (514)
Q Consensus 274 ~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-------ll~~~~-~~---~~~ 338 (514)
+-+.+....+. .=+.++..++....+.++..+|.+.+.-+... .|+...-.. +-+..+ .- -+.
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 55554433111 12456788888888999999998888877643 333221111 111112 11 112
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHH---HHHHhcCC-cchHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhc---CC
Q 010236 339 DVIKKNFENMKDRGHGKIGAIYAILV---DIYGQYGR-FRDPEECIAALKLEGLQPSGSMFCILA----NAYAQQ---GL 407 (514)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---g~ 407 (514)
..-..+++.+...++... .....|+ .-+-+.|. -++|..+++.+..-. .-|...-|.+. .+|.+. ..
T Consensus 359 r~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~ 436 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHA 436 (549)
T ss_pred HHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 233344555544433211 1112222 22344455 778899998887642 22333322222 233222 23
Q ss_pred HHHHHHHHHHhhhCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchH
Q 010236 408 CEQTVKVLQLMEPEGIEPNL----VMLNVLINA--FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKV 481 (514)
Q Consensus 408 ~~~a~~~~~~~~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 481 (514)
+..-.++-+-+.+.|++|-. ..-|.|.++ +..+|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 44444555555667877643 344555443 4567999888765444444 778999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 010236 482 PEIYKQMESSGCTPDRKARQIL 503 (514)
Q Consensus 482 ~~~~~~m~~~g~~p~~~~~~~l 503 (514)
.+++.. ++|+..+++.=
T Consensus 515 ~~~l~~-----LP~n~~~~dsk 531 (549)
T PF07079_consen 515 WEYLQK-----LPPNERMRDSK 531 (549)
T ss_pred HHHHHh-----CCCchhhHHHH
Confidence 999986 46676666643
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.29 Score=47.79 Aligned_cols=252 Identities=13% Similarity=0.154 Sum_probs=130.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHhccCCH--HHHHHHHHHHHHCCCCC
Q 010236 217 SFVYGKVIGLYRDNGMWKKAVGI---------VEEIREMGLSLDRQIYNSIIDTFGKYGEL--VEALEVFEKMQQESIRP 285 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~~~~p 285 (514)
+..+.+=+..|...|.+++|.++ ++.+... ..+...++..=++|.+..+. -+...-+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 33344445566677777776653 2222111 12333445555667666543 34445566777888777
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHHHhc--CCCCcH
Q 010236 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFI-----TIISCLGELGKWDVIKKNFENMKDR--GHGKIG 357 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 357 (514)
+... +...++-.|++.+|-++|.+- |...-. ..|+ -..+-+...|..++-..+.++-.+. +....
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 7653 334455667777777776542 222100 0010 1122233344433333332222110 11111
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHH------HHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 010236 358 AIYAILVDIYGQYGRFRDPEECIAA------LKLEGL---QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV 428 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~------~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 428 (514)
.+...++...|+.++|..+.-+ +.+-+- ..+..+...+...+.+...+.-|-++|..|-+.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1233444556666666654321 111111 122334444444455556667777777777542
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH-----------HHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV-----------TYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
..++......+++++|..+-++..+ +.||+. -|...-.+|.++|+..+|.++++++...
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3567777888888888888777654 233332 2344456788888888888888888654
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.41 Score=41.45 Aligned_cols=146 Identities=8% Similarity=-0.031 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-----HH
Q 010236 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-----NV 432 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----~~ 432 (514)
.+.+.++..+.-.+.+.-..++++++++.+...++.....|.+.-.+.|+.+.|...|+...+..-..|..+. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677777778888889999999999887778889999999999999999999999977654323333333 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010236 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a 506 (514)
....|.-++++.+|...+.+....+.. |+...|.-.-+..-.|+..+|.+.++.|.. ..|...+-+.++--
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFN 328 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHH
Confidence 344566678899999999988776543 555555544455567889999999999997 56766665544433
No 215
>PRK15331 chaperone protein SicA; Provisional
Probab=96.58 E-value=0.067 Score=42.99 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=37.9
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
+.|++++|..+|+-+...+. -+..-|..|..++-..+++++|...|......+ .-|...+-....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 34555555555555444332 223334444444444455555555554433322 1122223334445555555555555
Q ss_pred HHHHHHH
Q 010236 449 VYHLMKD 455 (514)
Q Consensus 449 ~~~~m~~ 455 (514)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554444
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.50 E-value=0.43 Score=46.75 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010236 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVF 275 (514)
Q Consensus 201 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 275 (514)
.+.-+++++++|-.|+.... ...|+-.|++.+|-++|.+--.. |..+.+|.....+|.|.+++
T Consensus 619 li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~ 681 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFL 681 (1081)
T ss_pred HHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHh
Confidence 33445666777766766433 34556677788887777653221 22344454445555555444
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.37 E-value=0.15 Score=41.11 Aligned_cols=91 Identities=9% Similarity=-0.041 Sum_probs=70.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
...+-..|++++|..+|+-+.-.+ +-+..-|..|..++-..+++++|+..|......+ ..|...+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 334457799999999999887765 3456667778888888899999999998877655 34555566667888899999
Q ss_pred hhHHHHHHHHHHc
Q 010236 164 GLGSRLLMVMEDM 176 (514)
Q Consensus 164 ~~A~~~~~~~~~~ 176 (514)
+.|...|+...+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888773
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.34 E-value=0.0077 Score=42.43 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cC-HHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 428 VMLNVLINAFGVAGKYKEALSVYHLMKDI----GIS-PD-LVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.+|+.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666667777776666665421 211 11 3456666666777777777777766654
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.34 E-value=0.84 Score=42.03 Aligned_cols=290 Identities=15% Similarity=0.084 Sum_probs=159.5
Q ss_pred HHHHHHHHHh--cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010236 150 YNILLRGFLK--KGLLGLGSRLLMVMEDMGICRNQETYEILLDYH--VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG 225 (514)
Q Consensus 150 ~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 225 (514)
|..|-.++.. .|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.. |+.+-..=++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 4444444333 46666666665544321 224555555555433 346888888888888875 3333322222
Q ss_pred ----HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH
Q 010236 226 ----LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVT--WNSLIRWHC 298 (514)
Q Consensus 226 ----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~ 298 (514)
...+.|..+.|.++-+..-..- +.-...+.+.+...+..|+++.|+++.+.-.+.. +.+++.- -..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2335677777777777766542 2335567777888888888888888887765432 3344322 122222211
Q ss_pred h---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcc
Q 010236 299 K---AGDVAKALELFTQMQEQGFYPDPKI-FITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFR 374 (514)
Q Consensus 299 ~---~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 374 (514)
. .-+...|...-.+..+ +.||-.- -..-..++.+.|+..++-.+++.+-+....|+ ++ ..|.+..--+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gd 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGD 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCC
Confidence 1 1234444444444333 3444321 22234567778888888888887777654333 22 2233333333
Q ss_pred hHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHH
Q 010236 375 DPEECIAALKLE-GLQPS-GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV-AGKYKEALSVYH 451 (514)
Q Consensus 375 ~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~ 451 (514)
.+..-+++.... ..+|+ ......+..+-...|++..|..--+..... .|....|..|.+.-.. .|+-.++...+-
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 444444443321 22333 344455566666777777777666665543 6777777766665443 378888887777
Q ss_pred HHHHC
Q 010236 452 LMKDI 456 (514)
Q Consensus 452 ~m~~~ 456 (514)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 77654
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.4 Score=44.69 Aligned_cols=179 Identities=15% Similarity=0.208 Sum_probs=117.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH----HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIE----ALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.....-|+.+++...+.-|+.+.+.-. .+..+...+.. -+.+.|++++|...|-+.... +.| ..+
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 344567777788888888887765422 24444444444 445789999998887665532 122 235
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
|.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+.-. .|.. ..-....+..|.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5666677777777788888888888 566777889999999999888766665543 2221 12245566777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
++|..+-..... .......++ -..+++++|++.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 777666544432 333444443 35678999999988774
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.23 E-value=0.98 Score=41.65 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..++|++..++-.. .-++.-|..+++.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888877766552 46888888888899999998887765432 123466888888888
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+.|+..+|..++..+ + +..-+..|.+.|++.+|.+.-.+..
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888888887762 1 2445677888888888877655443
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.19 E-value=0.16 Score=39.42 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHcC
Q 010236 422 GIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~ 475 (514)
.+.|+..+..+++.+|+..|++..|.++.+... ..+++.+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999875 457777788899888766543
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.15 E-value=0.021 Score=40.21 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 393 SMFCILANAYAQQGLCEQTVKVLQLMEPE----GI-EPN-LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.+++.+...|...|++++|++.|++..+. |- .|+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34666666777777777777777665532 10 122 45677888888888888888888887653
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.04 E-value=0.16 Score=49.13 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010236 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH 297 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 297 (514)
.-.+.++..+.+.|..+.|+++-..-.. -.+...+.|+++.|.++.++. ++...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 3355555666666666666555433221 123344556666666554332 2455666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHH
Q 010236 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPE 377 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 377 (514)
.+.|+++-|.+.|.+... +..++-.|.-.|+.+...++.+.....|- ++....++...|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666655432 33444455555666555555555554441 333333444445555555
Q ss_pred HHHHH
Q 010236 378 ECIAA 382 (514)
Q Consensus 378 ~~~~~ 382 (514)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.03 E-value=0.056 Score=47.04 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=62.2
Q ss_pred CCCccCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010236 71 SGEEFSGNSYNKSIQYCCKL-----GDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 145 (514)
.+.+.|-.+|-+.+..+... +.++=....++.|.+.|+..|..+|+.|++.+-+..-.. ..+|+..
T Consensus 61 ~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~------- 131 (406)
T KOG3941|consen 61 EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKV------- 131 (406)
T ss_pred CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHH-------
Confidence 34455566666666655432 344444455556666666666666666666553322110 0001000
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCH-HHHHHHHHHH
Q 010236 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRL-DDTWLIINEM 208 (514)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m 208 (514)
.+ -| -.+-+-+++++++|...|+.||..+-..|++++.+.+.. .+..++.-.|
T Consensus 132 -------F~-HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 -------FL-HY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred -------Hh-hC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 00 00 012245677777777777777777777777777766643 3344444444
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.00 E-value=0.5 Score=36.25 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010236 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
....+......|+-++-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..++|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3334445555555555555555554322 44555555555555555555555555555555543
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.94 E-value=0.088 Score=49.69 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 010236 390 PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTY 465 (514)
Q Consensus 390 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 465 (514)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.++++.+.+ . ..|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhH
Confidence 35778999999999999999999999998886 5663 358999999999999999999999998852 1 123
Q ss_pred HHHHH--HHHcCCCcchHHHHHHHHHhCCC
Q 010236 466 STLMK--AFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 466 ~~l~~--~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
..+.. .+....+..+..++++.+.+.|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 22111 11122334577778888887765
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.93 E-value=1.5 Score=41.08 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
-+.+++.++.-.|++++|.+..++|.+
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334444444445555555555555544
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.90 E-value=0.15 Score=39.53 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=46.9
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh-CCCCCCHHHHHHHHHHHHH
Q 010236 455 DIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-SGCTPDRKARQILQSALVV 509 (514)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~a~~~ 509 (514)
.....|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|++=...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999886 5888889999988875443
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.89 E-value=1.6 Score=41.16 Aligned_cols=374 Identities=14% Similarity=0.083 Sum_probs=206.2
Q ss_pred HHHHHHHH--HhcCCHHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 010236 80 YNKSIQYC--CKLGDIDEAMALLAQMQAL--GFHP------------SSISYASLIEALASVGRTLEADAIFQEMVCFG- 142 (514)
Q Consensus 80 ~~~li~~~--~~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g- 142 (514)
|-.+..++ -+.+++++|++.+..-.+. +..+ |...=+..+..+...|++.+++.+++++...=
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444443 4779999999988766554 2222 12223556778889999999999999887643
Q ss_pred ---CCCChHhHHHHHHHHHhcC--------Ch-------hhHHHHHHHHHHc------CCCcChHhHHHHHHHHHhcC--
Q 010236 143 ---FNPKLRFYNILLRGFLKKG--------LL-------GLGSRLLMVMEDM------GICRNQETYEILLDYHVNAG-- 196 (514)
Q Consensus 143 ---~~~~~~~~~~li~~~~~~g--------~~-------~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g-- 196 (514)
...+..+|+.++-.+.+.= .. +.+.-..++|... .+.|.......++....-..
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 3488999998666665421 11 1122222222211 11233333333333322211
Q ss_pred CHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhccCCHHHH
Q 010236 197 RLDDTWLIINEMRSKGFQLNSF-VYGKVIGLYRDNGMWKKAVGIVEEIREMGLS----LDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 197 ~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A 271 (514)
+..--.+++......-+.|+-. ....+...+.+ +.+++..+-+.+....+. .-..++..++....+.++...|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1122223333333333445432 23334444443 556666665555443211 1245677888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHH-------HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH-HHHHH---HHHHHccC
Q 010236 272 LEVFEKMQQESIRPDIVTWN-------SLIRWHCK----AGDVAKALELFTQMQEQGFYPDPK-IFITI---ISCLGELG 336 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l---l~~~~~~~ 336 (514)
.+.+.-+..- .|+...-. .+-+..+. .-+...-+.+|+.....++ |.. ....+ ..-+.+.|
T Consensus 318 ~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 318 KQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcC
Confidence 9888777653 33332111 12222221 1123344566666655433 221 11122 23355666
Q ss_pred C-HHHHHHHHHHHHhcCCCCcHHHHHHH----HHHHHhc---CCcchHHHHHHHHHHcCCCCC----HHHHHHHHHH--H
Q 010236 337 K-WDVIKKNFENMKDRGHGKIGAIYAIL----VDIYGQY---GRFRDPEECIAALKLEGLQPS----GSMFCILANA--Y 402 (514)
Q Consensus 337 ~-~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~---g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~--~ 402 (514)
. -+.|..+++.+.+-. +-|...-|.+ =..|.+. ..+.+-..+-+-+.+.|+.|- ...-|.|.++ +
T Consensus 394 ~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 6 788899988887642 2333333322 2333332 223333444444556677653 2334444443 4
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 010236 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYST 467 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 467 (514)
..+|++.++.-.-.-+.+ +.|+..+|..+.-+.....++++|+.++..+ +|+..++++
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 567899888776665555 5899999999999999999999999999874 456666654
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.28 Score=46.46 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
+...|+.+...|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999999998887 4553 35899999999999999999999999875
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.92 Score=40.27 Aligned_cols=142 Identities=9% Similarity=0.039 Sum_probs=57.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010236 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
....|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..++..--.........-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344555555555555554432 2223344445555555555555555555544321111111111122333333333322
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC
Q 010236 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDRQIYNSIIDTFGKYG 266 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~ 266 (514)
..+-.+.... +-|...-..+...+...|+.+.|.+.+-.+.+++. .-|...-..++..+.-.|
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2232222221 11333334444455555555555555544443311 123333444444444444
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.82 E-value=0.73 Score=36.71 Aligned_cols=126 Identities=11% Similarity=0.049 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
...+|..+.+.+.+......++.+...+ ..+...++.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3467888887888888888888888776 466777888888887654 3333344332 1233444556677777
Q ss_pred cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010236 160 KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
.+.++++..++.++.. |...+..+... ++++.|.+.+.+- .++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777666665532 22223333333 5566666655541 14445555554443
No 234
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.78 E-value=3.1 Score=44.28 Aligned_cols=108 Identities=18% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 010236 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPK--IFITIISCL 332 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~ 332 (514)
|.+..+.+.....+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -|.. +-..+..-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 34444444555666666655554432 123455666677777777776665431 1211 124455556
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010236 333 GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
...+++-+|-++..+.... ....+..|++...+++|.++...
T Consensus 1010 ~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 6666666666665554432 12233344455555555554443
No 235
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.21 Score=46.18 Aligned_cols=90 Identities=11% Similarity=0.027 Sum_probs=45.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----CCCC---------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 010236 85 QYCCKLGDIDEAMALLAQMQAL-----GFHP---------SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 150 (514)
+.|.+.|++..|...|++.... +..+ -..+++.+...+.+.+++..|++..+..+..+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3677888888888888876542 1111 01233344444444555555555555544443 3334333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH
Q 010236 151 NILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
---..+++..|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3334444444455555555544444
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.75 E-value=1.8 Score=40.75 Aligned_cols=129 Identities=12% Similarity=0.157 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 010236 323 KIFITIISCLGELGKWDVIKKNFENMKDRG-HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM-FCILAN 400 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~ 400 (514)
..|...+....+...++.|..+|.++.+.+ ..+++.++++++..++. |+..-|..+|+.-... -||... -...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777778888999999999999988 67788899999987764 7888999999876654 234333 345566
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 401 AYAQQGLCEQTVKVLQLMEPEGIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
-+...++-+.|..+|+...+. +..+ ...|..+|.--..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677889999999999966543 2223 46799999988889999888888777766
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.67 E-value=0.85 Score=36.34 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
.++..+...+........++.+...+ ..+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444444555544444443 2334444444444443
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.64 E-value=1 Score=44.21 Aligned_cols=162 Identities=11% Similarity=0.135 Sum_probs=97.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCHHHH
Q 010236 326 ITIISCLGELGKWDVIKKNFENMKDRGHGKIG------AIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
..++....=.|+-+.+.+.+....+.+--..+ -.|...+..+.. ....+.|.+++..+..+ -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34444445555666666555554442211111 122233322222 34567788888888876 4666666
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHhhhCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010236 396 CIL-ANAYAQQGLCEQTVKVLQLMEPEG--I-EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (514)
Q Consensus 396 ~~l-i~~~~~~g~~~~a~~~~~~~~~~~--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (514)
... .+.+...|+.++|++.|+...... . +.....+--+...+...+++++|.+.|.++.+..- -...+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 543 345667889999999999765421 1 12334566777888889999999999999986422 234445444433
Q ss_pred -HHcCCCc-------chHHHHHHHHHh
Q 010236 472 -FIRAKKF-------HKVPEIYKQMES 490 (514)
Q Consensus 472 -~~~~g~~-------~~a~~~~~~m~~ 490 (514)
+...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3467777 788888887764
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.64 E-value=1.8 Score=39.97 Aligned_cols=299 Identities=12% Similarity=0.047 Sum_probs=188.3
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHccCChHHHHHHHHHHHHcCCCCCHH--HHHH
Q 010236 184 TYEILLDYHV--NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIG--LYRDNGMWKKAVGIVEEIREMGLSLDRQ--IYNS 257 (514)
Q Consensus 184 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 257 (514)
-|..|-.++. -.|+-..|.++-.+-.+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3445544444 357777777776654422 2335555555554 344579999999999999863 2222 2333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH-
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-FYPDPK--IFITIISCLG- 333 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~- 333 (514)
|.-.--+.|..+.|..+-++.-..-.. -.-.+...+...+..|+++.|+++++.-.+.. +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 444445788999999888887665221 23567788999999999999999999876543 334432 1122222211
Q ss_pred --ccCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010236 334 --ELGKWDVIKKNFENMKDRGHGKIG-AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQ 410 (514)
Q Consensus 334 --~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 410 (514)
-..+...|...-.+..+.. |+. ..-..-...+.+.|+..++-.+++.+-+....|+ ++.. ..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--c
Confidence 1224555555555555442 222 1223445678899999999999999988755554 3332 22344454 3
Q ss_pred HHHHHHHhhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc-CCCcchHHHHHHH
Q 010236 411 TVKVLQLMEPE-GIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR-AKKFHKVPEIYKQ 487 (514)
Q Consensus 411 a~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 487 (514)
+..-++...+. .++| +....-.+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333322211 1233 556677778888899999988877666654 46788888888877654 5999999999999
Q ss_pred HHhCCCCCCH
Q 010236 488 MESSGCTPDR 497 (514)
Q Consensus 488 m~~~g~~p~~ 497 (514)
..+..-.|+-
T Consensus 389 av~APrdPaW 398 (531)
T COG3898 389 AVKAPRDPAW 398 (531)
T ss_pred HhcCCCCCcc
Confidence 9877666653
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.54 E-value=0.13 Score=44.77 Aligned_cols=72 Identities=26% Similarity=0.276 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 010236 406 GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA----------------GKYKEALSVYHLMKDIGISPDLVTYSTLM 469 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 469 (514)
+..+-....++.|.+.|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444555555566666666666666666554332 22344778888888888888888888888
Q ss_pred HHHHcCCC
Q 010236 470 KAFIRAKK 477 (514)
Q Consensus 470 ~~~~~~g~ 477 (514)
.++.+.+-
T Consensus 166 n~FGr~~~ 173 (406)
T KOG3941|consen 166 NAFGRWNF 173 (406)
T ss_pred HHhccccc
Confidence 88877664
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.49 E-value=0.29 Score=47.31 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=106.8
Q ss_pred HHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 85 QYCCKLGDIDEAMALLAQMQ-ALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
....-.|+++++.+..+.-. -..+ +..-.+.++.-+-+.|..+.|+++-..-. .-.....++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34456799999888776211 1111 24557888899999999999998754322 234566789999
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 010236 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (514)
+.|.++.+.. .+...|..|.+...+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 9998876543 4677999999999999999999999987643 566777888899999888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010236 244 REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKM 278 (514)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 278 (514)
...|- +|....++.-.|+.++..+++.+-
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 87763 344445555668888888887664
No 242
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.38 E-value=0.22 Score=44.24 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQILQ 504 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~ 504 (514)
+..++..+...|+.+.+...++++...... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 344555555555555555555555544322 445555555555555555555555555443 35555555555544
Q ss_pred HH
Q 010236 505 SA 506 (514)
Q Consensus 505 ~a 506 (514)
++
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 243
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.31 E-value=0.83 Score=35.00 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=70.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCC
Q 010236 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL---RFYNILLRGFLKKGL 162 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~ 162 (514)
+++..|+++.|++.|.+....- +-....||.-.+++.-.|+.++|++-+++..+..-+... ..|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5678899999999999987653 456788999999999999999999999888874322222 233344456667888
Q ss_pred hhhHHHHHHHHHHcCC
Q 010236 163 LGLGSRLLMVMEDMGI 178 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~ 178 (514)
.+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8999988888877653
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.26 E-value=2.3 Score=38.78 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCC---CCChHhHHHHHHHHHhcCCh
Q 010236 93 IDEAMALLAQMQALGFHPSSISYASLIEALAS--VG----RTLEADAIFQEMVCFGF---NPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~ 163 (514)
+++.+.+++.|.+.|++.+..+|.+..-.... .. ...+|.++|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45556778888888888877766654333332 22 24568888888887531 2444555555544 33332
Q ss_pred ----hhHHHHHHHHHHcCCCcCh-HhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010236 164 ----GLGSRLLMVMEDMGICRNQ-ETYEILLDYHVNAGR---LDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 164 ----~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
+.++.+|+.+.+.|...+. ..+.+-+-++..... ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4556667777666654432 222222222222211 335666677777777766666655544
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.24 E-value=1 Score=34.61 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
....+......|.-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.++-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455555565565555555554322 455555555666666666666666666665555543
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.72 Score=41.52 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=104.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhcCCcc
Q 010236 298 CKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR---GHGKIGAIYAILVDIYGQYGRFR 374 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 374 (514)
...|+..+|-..++++.+. .+-|...+...-.+|.-.|+.+.-...++++... +.+....+-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567888888888888774 4556677777778888888888888888887754 22222333344455566788999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 375 DPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE---GIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
+|++.-++..+.+ +.|...-.++...+.-.|+..++.++..+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888887665 346666667777777888888888887665432 100111223344445666788899999888
Q ss_pred HHH
Q 010236 452 LMK 454 (514)
Q Consensus 452 ~m~ 454 (514)
.=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.96 Score=40.75 Aligned_cols=154 Identities=12% Similarity=0.047 Sum_probs=107.7
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCCH
Q 010236 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI----TIISCLGELGKW 338 (514)
Q Consensus 263 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~ 338 (514)
--.|+..+|-..++++.+. .+.|..++.--=.+|.-.|+.+.-...++++... ..+|...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888875 4568888888888999999999999999988753 233433332 333345688999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 010236 339 DVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS---GSMFCILANAYAQQGLCEQTVKVL 415 (514)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 415 (514)
++|++.-++..+.+ +.|...-.++...+...|++.++.+...+-...=-..+ ...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888876 55677777888888889999999988776432100000 011112222345568999999999
Q ss_pred HHhh
Q 010236 416 QLME 419 (514)
Q Consensus 416 ~~~~ 419 (514)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7543
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.59 Score=43.29 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=82.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 010236 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGL 407 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 407 (514)
-...+.+.|++..|...|+++...=. |...-+.++... ...+ -..++..+.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~-~~~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKK-AEAL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHH-HHHH-------HHHHhhHHHHHHHhhhh
Confidence 34678888888888888887664210 000001111111 1111 11345666667778888
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc-chHHHHHH
Q 010236 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF-HKVPEIYK 486 (514)
Q Consensus 408 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~ 486 (514)
+..|++.-...+..+ ++|+-..---..+|...|+++.|+..|+++++..+. |...-+.|+..-.+.... +...++|.
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777764 556666666677788888888888888888774322 333344444443333333 34466777
Q ss_pred HHHh
Q 010236 487 QMES 490 (514)
Q Consensus 487 ~m~~ 490 (514)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7764
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=94.60 E-value=4.4 Score=38.80 Aligned_cols=111 Identities=8% Similarity=0.041 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
..+|.+..++..+.+ .-|......+..+....++++.|...|++.... .|| ..+|......+.-+|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666666666665 346777777777777778888899999888875 454 4566666667777899999999888
Q ss_pred HHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010236 452 LMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 452 ~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
+..+..+.. -.......++.|+..+ .++|++++-+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 866543221 2233444455666665 4677776644
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.57 E-value=0.15 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
|..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=2.8 Score=36.21 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHH
Q 010236 254 IYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
.|+.-..+|..+|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 344444555555555555444444
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.49 E-value=0.99 Score=34.59 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=64.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH---hHHHHHHHHHhcCC
Q 010236 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE---TYEILLDYHVNAGR 197 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 197 (514)
+++..|+++.|++.|.+.+..- +.....||.-..++--.|+.++|++-+++..+..-..+.. .|..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5678899999999999888753 5567888888888888899988888888877653222222 23333345556677
Q ss_pred HHHHHHHHHHHHHcC
Q 010236 198 LDDTWLIINEMRSKG 212 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g 212 (514)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=3.4 Score=36.86 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=63.1
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010236 333 GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTV 412 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 412 (514)
...|+..++...|....... +.+....-.+..+|...|+.+.|..++..+....-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555555555555433 12233444555555566666666666655433211111111111122222222222222
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCcCHHHHHHHHHHHHcCCCcc
Q 010236 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD--IGISPDLVTYSTLMKAFIRAKKFH 479 (514)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~g~~~ 479 (514)
.+-...-.. +-|...-..+...+...|+.++|.+.+-.+.+ .|.. |...-..++..+.-.|..+
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 222222221 22455555566666666777777666555543 2332 3344445555555545333
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=94.42 E-value=4.6 Score=38.67 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010236 129 LEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEM 208 (514)
Q Consensus 129 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 208 (514)
.+|.++-+...+.+ +.|......+..+..-.++++.|...|++....++ -...+|........-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555554 44555555555555555556666666666655432 12334444444444556666666665554
Q ss_pred HHc
Q 010236 209 RSK 211 (514)
Q Consensus 209 ~~~ 211 (514)
.+.
T Consensus 399 lrL 401 (458)
T PRK11906 399 LQL 401 (458)
T ss_pred hcc
Confidence 443
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.34 E-value=3.9 Score=37.10 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=65.0
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCHh------hHHHHHHHHHhcC-ChHHHHHHHHHHHHc----C----CCCC----
Q 010236 88 CKLGDIDEAMALLAQMQALG--FHPSSI------SYASLIEALASVG-RTLEADAIFQEMVCF----G----FNPK---- 146 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~--~~~~~~------~~~~li~~~~~~g-~~~~A~~~~~~~~~~----g----~~~~---- 146 (514)
.++|+++.|..++.+..... ..|+.. .|+.- ......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999998876542 123321 23332 3333445 787777777665432 1 1122
Q ss_pred -hHhHHHHHHHHHhcCChh---hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010236 147 -LRFYNILLRGFLKKGLLG---LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 147 -~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..++..++.+|...+..+ .|.++++.+..... -....+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234455566666655543 34444444433221 22344445555555566666666666666654
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.34 E-value=3.5 Score=37.80 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 010236 431 NVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m 453 (514)
..+.+.|...|+.+.|+.-|+..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHH
Confidence 44555555666666665555543
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.30 E-value=0.19 Score=30.49 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL 106 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (514)
.|..+...|.+.|++++|+++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.24 E-value=6.1 Score=38.88 Aligned_cols=388 Identities=12% Similarity=0.099 Sum_probs=185.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
+...|..+|..--...+.+.+..+++.+... .|... -|......=.+.|..+.+.++|++.+. |++.++..|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3445656665555555555666666666644 34433 233344444456666677777766654 3455555555444
Q ss_pred HHHH-hcCChhhHHHHHHHHHHc-CCC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---
Q 010236 155 RGFL-KKGLLGLGSRLLMVMEDM-GIC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR--- 228 (514)
Q Consensus 155 ~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~--- 228 (514)
.-+. ..|+.+...+.|+...+. |.. .....|...|..-..++++.....+|++.++. ....++....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 3333 345566666666665543 211 23445666666666666666666666666553 1112222111111
Q ss_pred -c-----cCChHHHHHHHHHHHH--------------------cCCCCCH--HHHHHH-------HHHHhccCCHHHHHH
Q 010236 229 -D-----NGMWKKAVGIVEEIRE--------------------MGLSLDR--QIYNSI-------IDTFGKYGELVEALE 273 (514)
Q Consensus 229 -~-----~g~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~l-------i~~~~~~~~~~~A~~ 273 (514)
. ....+++.++-..... .+-+.+. ...+.+ -.++-......+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 0 1112222222111110 0000000 000011 111222222333333
Q ss_pred HHHHHHHC---CCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010236 274 VFEKMQQE---SIR----PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 274 ~~~~m~~~---~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
.|+.-..+ .+. ++..+|..-+.--...|+++.+.-+|+...-.- ..=...|-..+.-....|+.+.+..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 33333322 112 245667777777778888888888887765311 1111222223333334477777777766
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHH---HHHHHhhhCC
Q 010236 347 NMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSM-FCILANAYAQQGLCEQTV---KVLQLMEPEG 422 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~---~~~~~~~~~~ 422 (514)
...+.-.+..+.+--.-....-..|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+. +++....+.
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-
Confidence 66554333333222222222334578888888888887653 43221 111223345566666666 333333322
Q ss_pred CCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010236 423 IEPNLVMLNVLINA-----FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 423 ~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
.-+..+...+.-- +.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 433 -~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 -KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred -ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1122222222222 23357788888888888765 4456666777776665544
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.20 E-value=3.5 Score=36.00 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=54.3
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
|-...|+.-+.. .+.|++++|.+.|+.+..+. +-+ ..+...++-++-+.++++.|+...++....-..-....|.
T Consensus 33 p~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTE-LQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 334566666555 46799999999999998763 223 3445556677778999999999998887753222233444
Q ss_pred HHHHHHH
Q 010236 152 ILLRGFL 158 (514)
Q Consensus 152 ~li~~~~ 158 (514)
.-|.+.+
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4455544
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=1.1 Score=39.29 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCc-CHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEG----IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI-GISP-DLVTYST 467 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~ 467 (514)
.|+.-+.. .+.|++..|...|....+.. ..|| .+-.|..++...|++++|..+|..+.+. +-.| -+..+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655544 35677888888888877652 2233 3445888888999999999988888653 2222 2456777
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
|..+..+.|+.++|...|++..+. -|+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 888888889999999999988873 45443
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.18 E-value=3.6 Score=35.97 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGF--QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
+.|++++|.+.|+.+....+ +-...+...++.++.+.+++++|+...++.+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444444444444443311 01122233333344444444444444444443
No 262
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.13 E-value=2.7 Score=34.35 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=72.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--ChhhHHHHHHHHH
Q 010236 97 MALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG--LLGLGSRLLMVME 174 (514)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 174 (514)
++..+.+.+.+++|+...+..+++.+.+.|++....+++ ..++-+|.......+-.+.... -...|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345556667778888888888888888888766554443 3333444443333332221111 1223334444333
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010236 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
. .+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 4556667777778888887777664322 223334455555555555554555544443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.08 E-value=9.9 Score=40.73 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHH
Q 010236 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLV--MLNVLINA 436 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~ 436 (514)
.|.+..+.+.....+++|--.|+..-+ ..-.+.+|..+|++.+|+.+..++... -+.. +-..|+.-
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHH
Confidence 344444444555666666666654321 223355666777777777777666432 1221 22566666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010236 437 FGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~ 455 (514)
+...+++-+|-++..+...
T Consensus 1009 L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHcccchhHHHHHHHHhc
Confidence 7777777777777666543
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.98 E-value=2.3 Score=33.54 Aligned_cols=72 Identities=18% Similarity=0.133 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 87 CCKLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
..+.|++++|++.|+.+..+- -+-.......++.++.+.+++++|...+++.++....--..-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 345577777777777766551 011233455566666677777777777766666542212233444444443
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.93 E-value=2.7 Score=38.33 Aligned_cols=127 Identities=12% Similarity=0.265 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHc--c----CChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHhccCC---
Q 010236 200 DTWLIINEMRSKGFQLNSFVYGKVIGLYRD--N----GMWKKAVGIVEEIREMGL---SLDRQIYNSIIDTFGKYGE--- 267 (514)
Q Consensus 200 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~--- 267 (514)
+...+++.|.+.|+.-+..+|.+..-.... . .....|..+|+.|.+... .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666665555443222222 1 123455666666665421 1233344444332 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010236 268 -LVEALEVFEKMQQESIRPDI--VTWNSLIRWHCKAGD--VAKALELFTQMQEQGFYPDPKIFITI 328 (514)
Q Consensus 268 -~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 328 (514)
.+.+..+|+.+.+.|...+. .....++.......+ ..++.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455666666665544332 222222222211111 34666777777777777666555443
No 266
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.88 E-value=7.2 Score=38.41 Aligned_cols=382 Identities=14% Similarity=0.113 Sum_probs=221.6
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010236 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL-RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
.+...|+.+|.---...+.+.+..+++.++.. -|-. -.|.....-=.+.|..+.+.++|++-.. +++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556777776655666667788888888754 3444 3566666666788999999999999886 455677788877
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHc-CCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--
Q 010236 189 LDYHV-NAGRLDDTWLIINEMRSK-GFQ-LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG-- 263 (514)
Q Consensus 189 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-- 263 (514)
+..+. ..|+.+...+.|+..... |.. .....|...|..-...+++.....+++++++.. ...++..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 76655 457888888888887664 221 145667888888888899999999999988742 222222222111
Q ss_pred --c-----cCCHHHHHHHHHHHHHC----CCCCCHHHHHH-----------------HH--------HHHHhcCChHHHH
Q 010236 264 --K-----YGELVEALEVFEKMQQE----SIRPDIVTWNS-----------------LI--------RWHCKAGDVAKAL 307 (514)
Q Consensus 264 --~-----~~~~~~A~~~~~~m~~~----~~~p~~~~~~~-----------------li--------~~~~~~g~~~~A~ 307 (514)
. ....+++.++-.....+ ...+....+.. +. ..+-......+..
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 1 12233333332222210 00001111111 11 1111122222223
Q ss_pred HHHHHHHHC---CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHH
Q 010236 308 ELFTQMQEQ---GFYP----DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECI 380 (514)
Q Consensus 308 ~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (514)
..|+.-... .++| +..+|...+.--...|+.+.+.-.++...-.- ..-...|--.+......|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 333332221 1222 34567777777788999999988888876431 223445555566666669988888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHH
Q 010236 381 AALKLEGLQPSGSMFCILANA-YAQQGLCEQTVKVLQLMEPEGIEPNLV-MLNVLINAFGVAGKYKEAL---SVYHLMKD 455 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~ 455 (514)
....+--.+..+ ....+-.. .-..|++..|..+++...+.- |+.. .-..-+....+.|..+.+. +++....+
T Consensus 355 ~~~~~i~~k~~~-~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 355 ARACKIHVKKTP-IIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred HhhhhhcCCCCc-HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 776654433222 22333333 345679999999999998763 5543 2233344556778888888 44444332
Q ss_pred CCCCcCHHHHHHHHHH-----HHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010236 456 IGISPDLVTYSTLMKA-----FIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 456 ~~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
... +..+...+.-- +.-.++.+.|..++.++.+. +.++..-+..+++
T Consensus 432 ~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 432 GKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIR 483 (577)
T ss_pred ccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHH
Confidence 211 22222222222 23367788999999999873 3444444444444
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.80 E-value=6.7 Score=37.82 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 361 AILVDIYGQYGRFRDPEECIAALKLEGLQ-PSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
..+..+.-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455555666666666666666544321 1233455666666666667666666666544
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.64 E-value=1.3 Score=38.91 Aligned_cols=95 Identities=23% Similarity=0.371 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHH
Q 010236 254 IYNSIIDTFGKYGELVEALEVFEKMQQES----IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG-FYP-DPKIFIT 327 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ 327 (514)
.|+.-++ +.+.|++.+|...|....+.. ..|| .+-.|..++...|+++.|...|..+.+.- -.| -+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555554 345566777777777776652 2222 33446777777777777777777766531 111 2345555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc
Q 010236 328 IISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
+..+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666666677777777777776665
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.63 E-value=2.9 Score=33.01 Aligned_cols=80 Identities=9% Similarity=-0.123 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFGF--NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
.-.....+.|++++|.+.|+.+...-. +-.....-.++.+|.+.+++++|...+++..+..+......|...+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 334455678999999999999987521 223456677899999999999999999999997765445667666666554
Q ss_pred cC
Q 010236 195 AG 196 (514)
Q Consensus 195 ~g 196 (514)
-.
T Consensus 95 ~~ 96 (142)
T PF13512_consen 95 YE 96 (142)
T ss_pred HH
Confidence 33
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.62 E-value=2.4 Score=38.83 Aligned_cols=128 Identities=11% Similarity=0.016 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCH-----
Q 010236 362 ILVDIYGQYGRFRDPEECIAALKLEGL-----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE----GIEPNL----- 427 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~----- 427 (514)
.+..++.-.+.++++.+.|+...+... .....++..|.+.|.+..|+++|.-+..+..+. ++..=.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344445555556666666665543211 112235666667777777777776655544331 211111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 428 VMLNVLINAFGVAGKYKEALSVYHLMKD----IGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.....|..++...|+..+|.+.-++..+ .|-.+- ......+.+.|...|+.+.|..-|++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1223455667788888888888777643 343221 2345567788889999999888777654
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.58 E-value=1.2 Score=37.05 Aligned_cols=63 Identities=14% Similarity=0.223 Sum_probs=45.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--SISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
..+..+...|++.|+.++|++.|.++.+....+. ...+..+|+.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788888888888888888888877654433 33566777777778888877777766654
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.51 E-value=4.5 Score=34.92 Aligned_cols=200 Identities=19% Similarity=0.160 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010236 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIIS- 330 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 330 (514)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444445555555555555555554431 112233344444444555555555555555555432222 111111111
Q ss_pred HHHccCCHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 010236 331 CLGELGKWDVIKKNFENMKDRGH--GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC 408 (514)
Q Consensus 331 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 408 (514)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533211 0122222233333444555556665555555432211234455555555555666
Q ss_pred HHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 409 EQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+.+...+...... .|+ ...+..+...+...+..+++...+++...
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666665553 222 33333344444445556666666665554
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.47 E-value=1.2 Score=39.78 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcCHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-----DIGISPDLVTYSTL 468 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~~l 468 (514)
++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566667777777777777777776653 4466677777777777777777777777664 35777777776666
Q ss_pred HHH
Q 010236 469 MKA 471 (514)
Q Consensus 469 ~~~ 471 (514)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 655
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.33 E-value=4 Score=39.25 Aligned_cols=184 Identities=12% Similarity=0.069 Sum_probs=100.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010236 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
.-+..+...-+++-++..+ +.||-.+.-.++ +--......++++++++..+.+-. .+. +....+..
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg-------~s~~~~~~ 243 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLG-------KSQFLQHH 243 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhc-------hhhhhhcc
Confidence 3355566666666666665 345443322222 222344578888888887765411 111 00000010
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIE-PNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
-..++....++..+-..+-..+..++.+.|+.++|.+.+++|.+..-. -+......|+.++...+.+.++..++.+-.+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111122222222333333345666777889999999999999865311 1344677899999999999999999988654
Q ss_pred CCCCcC-HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 456 IGISPD-LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 456 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
...+.. ...|+..+-.+...++.-. -+...++|+.|...
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs----~e~a~rRGls~ae~ 363 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFS----PEAASRRGLSPAEM 363 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccC----chhhhhcCCChhHH
Confidence 322212 3355554444443443211 12234567777654
No 275
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.20 E-value=5.1 Score=34.59 Aligned_cols=223 Identities=18% Similarity=0.132 Sum_probs=157.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 010236 265 YGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ-GFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 265 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555666666665554221 13567777888889999999999988887752 23445566777777788888899999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHH-HHHhcCCcchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 343 KNFENMKDRGHGKIGAIYAILVD-IYGQYGRFRDPEECIAALKLEGL--QPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
..+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888754333 222222333 78899999999999999865321 1233344444445677889999999999988
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 420 PEGIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 420 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
... .. ....+..+...+...++++.|...+......... ....+..+...+...+..+++...+++..+
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 33 4677888889999999999999999998874322 244555555555577778899888888876
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.20 E-value=11 Score=38.25 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=7.2
Q ss_pred cchHHHHHHHHHHc
Q 010236 373 FRDPEECIAALKLE 386 (514)
Q Consensus 373 ~~~A~~~~~~~~~~ 386 (514)
+..|.++++...+.
T Consensus 525 ~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 525 LHLAKRYYDQASEE 538 (552)
T ss_pred hHHHHHHHHHHHhc
Confidence 34555555555443
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.18 E-value=6.5 Score=35.71 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=30.5
Q ss_pred hHHHHHHHHHccCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 219 VYGKVIGLYRDNGMWK---KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 219 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
++..++.++...+..+ +|..+++.+... .+-...++-.-+..+.+.++.+++.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555555443 333344444332 1222334444455555566666666666666654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.95 E-value=0.26 Score=28.32 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQM 103 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m 103 (514)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.79 E-value=1.7 Score=36.15 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010236 183 ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN--SFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556666677777777777777777666543332 23455566666667777766666665543
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.47 E-value=4.9 Score=32.46 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=8.7
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 010236 403 AQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~ 420 (514)
...|++.+|..+|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344455555555555443
No 281
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.41 E-value=12 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHHHHH
Q 010236 493 CTPDRKARQILQSALV 508 (514)
Q Consensus 493 ~~p~~~~~~~l~~a~~ 508 (514)
..+|......|+++.+
T Consensus 449 ~~~De~~l~~lL~g~~ 464 (468)
T PF10300_consen 449 EDPDERALRHLLKGAC 464 (468)
T ss_pred CCccHHHHHHHHHHHH
Confidence 4566666666666654
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=5.2 Score=32.58 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=52.9
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHH--HHHHHccCCh
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF-VYGKV--IGLYRDNGMW 233 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l--l~~~~~~g~~ 233 (514)
++.+..++|+..|..+.+.|...-++ ..-.......+.|+...|...|++.-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455666666666666554321111 11112223445566666666666655443332221 11111 1123344555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010236 234 KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 280 (514)
++.....+-+...+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55444444443333222233333444444455555555555555443
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.14 E-value=5.6 Score=32.43 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=71.3
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCCH
Q 010236 333 GELGKWDVIKKNFENMKDRGHGKIGAI-YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGS-MFCIL--ANAYAQQGLC 408 (514)
Q Consensus 333 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 408 (514)
.+.++.++|+.-|..+.+.|...-+.. .........+.|+...|...|.++-.....|-.. -..-| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344555666666666665543322221 1122333455666777777777665543333221 00111 1234567778
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010236 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+......+.+...+-+.....-..|.-+-.+.|++..|.+.|+.+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7777777776655534444455667777778888888888888876543333
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.91 E-value=0.46 Score=27.28 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.19 E-value=7.3 Score=31.88 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 010236 293 LIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~ 312 (514)
++..+...|++-+|+++.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 33344444444444444443
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.96 E-value=1.7 Score=31.35 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 447 LSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 447 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555555444
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.43 E-value=4 Score=29.82 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010236 446 ALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
..+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.. +.+....|..+++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 3334444444555566666666666666666666666666655532 222222455555444
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.23 E-value=0.5 Score=26.51 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666554
No 289
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.03 E-value=25 Score=36.15 Aligned_cols=221 Identities=14% Similarity=0.119 Sum_probs=93.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChH-
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-------TLEADAIFQEMVCFGFNPKLR- 148 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~~~~~~- 148 (514)
...| .+|-.|.|+|++++|.++.++.... .......+...+..+....+ -++...-|++..+.....|+.
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 3456 5888889999999999999555433 24455677788888876533 234555566555443222332
Q ss_pred --hHHHHHHHHHhcCChhhHH-HHHHHHHHcCCCcChHhHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCC
Q 010236 149 --FYNILLRGFLKKGLLGLGS-RLLMVMEDMGICRNQETYEILLDYHVNAG---------RLDDTWLIINEMRSKGFQLN 216 (514)
Q Consensus 149 --~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~g~~~~ 216 (514)
+|..+ .++.-.+.-. .+...+ +...|-.|.-.-.... .+++-.+.+.+.-+..+.+
T Consensus 190 ~AvY~il----g~cD~~~~~~~~V~~ti-------ED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 190 RAVYKIL----GRCDLSRRHLPEVARTI-------EDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHHHHH----HT--CCC-S-TTC--SH-------HHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHH----hcCCccccchHHHhCcH-------HHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 22222 2221101000 111111 1112222211111110 1122222222222222333
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 010236 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPDIVTWNSLIR 295 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~ 295 (514)
....-.....+.-.|+++.|++.+-. ......+.+.+...+.-|.-.+-.+... ..+.... -.|....+..||.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 11122234556678999999998877 2223445666655555443322222111 2222110 0111256778888
Q ss_pred HHHhc---CChHHHHHHHHHHHHC
Q 010236 296 WHCKA---GDVAKALELFTQMQEQ 316 (514)
Q Consensus 296 ~~~~~---g~~~~A~~~~~~m~~~ 316 (514)
.|.+. .+..+|+++|--+...
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHc
Confidence 88764 4677888888777654
No 290
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.99 E-value=0.013 Score=47.12 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=24.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010236 364 VDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
+..+.+.+.......+++.+...+...+....+.++..|++.+..+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444445555555555444333344445555555555544444444444
No 291
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.95 E-value=4.5 Score=39.76 Aligned_cols=99 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010236 263 GKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 263 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
.+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|..... +..|+-.+...|+.+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666665554432 455566666666666666666666655443 334444555555555444
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010236 343 KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
.+-....+.|. .|...-+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 44444433331 12222334445555555555543
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=5.2 Score=35.99 Aligned_cols=47 Identities=21% Similarity=0.165 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.++++.++..=.+-|+-||..+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555444444444433
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.54 E-value=1.1 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+|..+..+|...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666555554
No 294
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.53 E-value=0.49 Score=26.77 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=11.6
Q ss_pred CCHhhHHHHHHHHHhcCChHHHH
Q 010236 110 PSSISYASLIEALASVGRTLEAD 132 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~ 132 (514)
-|...|+.+...|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445555555555555555543
No 295
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=89.47 E-value=22 Score=36.23 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQ 102 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~ 102 (514)
+.-|+ .|..+.-.|.++.|.++++.
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45566 56666666778877777744
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.23 E-value=0.39 Score=27.16 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 010236 426 NLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~ 447 (514)
|...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4445555555555555555543
No 297
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=30 Score=35.84 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=88.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
..+.+.+.|++++|...|-+-... +.| ..+|.-+....+...-...++.+.+.|+ .+...-+.|+.+|.+.++
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcc
Confidence 344556889999999988775532 122 2456666777777777788888888885 556667789999999999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010236 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
.+.-.+..+... .|.. ..-....+..+.+.+-.++|..+-..... .......+ +-..+++++|++.+..
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 887777666554 2221 11234455666666666666554443322 22333322 2345666777666655
Q ss_pred H
Q 010236 243 I 243 (514)
Q Consensus 243 ~ 243 (514)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.10 E-value=0.68 Score=25.84 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666655544
No 299
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.03 E-value=11 Score=33.69 Aligned_cols=138 Identities=9% Similarity=0.103 Sum_probs=82.0
Q ss_pred cCChHHHHHHHHHHHH-cCCCCChHhHHHHHHHHHh-cC-ChhhHHHHHHHHHHc-CCCcChHhHHHHHHHHHhcCCHHH
Q 010236 125 VGRTLEADAIFQEMVC-FGFNPKLRFYNILLRGFLK-KG-LLGLGSRLLMVMEDM-GICRNQETYEILLDYHVNAGRLDD 200 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 200 (514)
+....+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+... +-.++..+....+..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345666666663221 1233455666666665554 21 223333444444322 344667777778888888888888
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHHHHccCChHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 010236 201 TWLIINEMRSK-GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE-----IREMGLSLDRQIYNSIIDTF 262 (514)
Q Consensus 201 A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~ 262 (514)
-+++++..... +..-|...|..+|+...+.|+..-..++.++ +.+.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 88877776655 5556777888888888888887766666654 23445666655555554444
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.90 E-value=11 Score=30.48 Aligned_cols=69 Identities=25% Similarity=0.190 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYA-SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK 160 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 160 (514)
.+.++.+++..+++.+... .|...... .-...+...|++.+|..+|+++...+ |.......|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 4567777777777777665 44433322 22345567777888888887776542 4444445555555443
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.31 E-value=23 Score=33.37 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 356 IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP---SGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
...++..+...+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777788888888888888888877643211 223334445566677888888888877766
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.81 E-value=12 Score=29.72 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=8.7
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 010236 403 AQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~ 420 (514)
...|++.+|..+|++..+
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 344455555555554444
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.63 E-value=17 Score=31.05 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
||--|.+-+...|+.++|..+|+-.+.
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444444455555555555555554443
No 304
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.54 E-value=11 Score=37.18 Aligned_cols=166 Identities=20% Similarity=0.186 Sum_probs=111.8
Q ss_pred ccCcchHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH
Q 010236 74 EFSGNSYNKSIQYC-----CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR 148 (514)
Q Consensus 74 ~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 148 (514)
+.++.+|..++..+ .-.|+++.|-.++..+.+ ...+.++..+-+.|-.++|+++- ..||..
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r 643 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS-------TDPDQR 643 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC-------CChhhh
Confidence 44566655544433 345888888776655542 23456677777788777776653 123221
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010236 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
.....+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+.
T Consensus 644 -----Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t 703 (794)
T KOG0276|consen 644 -----FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYT 703 (794)
T ss_pred -----hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhh
Confidence 23455789999998877654 3667899999999999999999999987654 456677777
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
..|+-+....+-....+.|. .|... -+|...|+++++.+++.+-.
T Consensus 704 ~~g~~~~l~~la~~~~~~g~-~N~AF-----~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLAKKQGK-NNLAF-----LAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hcCChhHHHHHHHHHHhhcc-cchHH-----HHHHHcCCHHHHHHHHHhcC
Confidence 78887766666666666653 33322 24566799999998886653
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=12 Score=33.77 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
+.++++.++..=...|+-||..+++.+++.+.+.+++.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444444444455555555555555555555555554444443
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.38 E-value=1.8 Score=24.08 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555566666666666665554
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.36 E-value=1.8 Score=25.48 Aligned_cols=27 Identities=37% Similarity=0.524 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 428 VMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777777777777777777777764
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.20 E-value=13 Score=31.18 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=85.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH--
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISY--ASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI-- 152 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-- 152 (514)
+..|..++...- .+.. +.....+++...+-...-..+ ..+...+...+++++|..-++..... |....+..
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~ 128 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALA 128 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHH
Confidence 345777777754 4444 666666777665311112222 33456788899999999999887753 33333333
Q ss_pred ---HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010236 153 ---LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 153 ---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
|.+.....|.+++|+..++.....+. .......-.+.+...|+-++|..-|......+
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44566778999999999988776322 22223445678889999999999999988875
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.98 E-value=6.3 Score=28.52 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 304 AKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++.+..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555556666666777777777777777777777777777776663
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.98 E-value=22 Score=31.82 Aligned_cols=58 Identities=19% Similarity=0.380 Sum_probs=38.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 221 GKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+...+.|...|.+.+|.++.+.....+ +.+...+..++..+...|+--.|.+.++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334456667777777777777776654 4566666677777777777666666666554
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=43 Score=34.51 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHP---SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
--|+.+.+.+.+++|++..+..... .| -...+...|..+...|++++|-...-.|. ..+..-|...+..+.
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhc
Confidence 3577888999999999988765533 33 23467788889999999999999888887 355666777777776
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
..+..... +.-++......+...|..++..+..
T Consensus 435 e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 435 ELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 66654433 2333332222456678888877776
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.27 E-value=1.7 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQA 105 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (514)
.+++.+...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777778888888888888777654
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.08 E-value=12 Score=31.32 Aligned_cols=91 Identities=10% Similarity=0.001 Sum_probs=61.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc
Q 010236 120 EALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (514)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (514)
+-+.++|++++|..-|...+..-.... ...|..-..++.+.+.++.|+.-..+..+.++ ........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 456678888888888888876531111 23455555677788888888888877777553 1122223334577788
Q ss_pred CCHHHHHHHHHHHHHc
Q 010236 196 GRLDDTWLIINEMRSK 211 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~ 211 (514)
..+++|+.-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888876
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.24 E-value=6.2 Score=35.92 Aligned_cols=90 Identities=10% Similarity=-0.021 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
.+-|.++|++++|++.|....... +-|.+++..-..+|.+..++..|..-....+..+ ..-+..|+--+.+--..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456788899999999998876652 3388888888888888888887777666665432 11122333333333334555
Q ss_pred hhHHHHHHHHHH
Q 010236 164 GLGSRLLMVMED 175 (514)
Q Consensus 164 ~~A~~~~~~~~~ 175 (514)
.+|.+-++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
No 315
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.24 E-value=8.1 Score=32.87 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRG 156 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~ 156 (514)
.+..++.+.+.+.+++|+...++-.+.. +.|..+-..+++.+|-.|++++|..-++..-+.. ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4556778888899999999888766653 5566677888899999999999987777665532 23445667766664
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.84 E-value=8 Score=28.36 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666667777777777777887777777777777777643
No 317
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.68 E-value=28 Score=30.79 Aligned_cols=50 Identities=6% Similarity=0.059 Sum_probs=26.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHccCChHHHHHHHHHHH
Q 010236 195 AGRLDDTWLIINEMRSKGFQLNSF---VYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
..++++|+.-|.+..+....-... +.-.++....+.+++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 346667777776666543222222 22334555566666666666555554
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.67 E-value=11 Score=31.86 Aligned_cols=74 Identities=14% Similarity=-0.008 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCcChHhHHHHHHHHHhcCCHHHHH
Q 010236 128 TLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
-+.|++.|-.+...+.--++...-.|...|. ..+.+++.+++-+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3678888888877665556666666666555 56778888888777654 22567888888999998888888875
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.07 E-value=13 Score=31.36 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=17.4
Q ss_pred cCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCHHH
Q 010236 300 AGDVAKALELFTQMQEQ---GFYPDPKIFITIISCLGELGKWDV 340 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~ 340 (514)
..+.++++.++....+. +-.+|+..+.+|...+.+.++++.
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444444444444321 123344444444444444444443
No 320
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.60 E-value=58 Score=33.62 Aligned_cols=416 Identities=11% Similarity=0.043 Sum_probs=207.4
Q ss_pred CccCcchHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhcCChHHHHHHHHHHHHcC----
Q 010236 73 EEFSGNSYNKSIQYCC-KLGDIDEAMALLAQMQALGFHPSSI-----SYASLIEALASVGRTLEADAIFQEMVCFG---- 142 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~g---- 142 (514)
++....++-.+...+. ...++++|...+++.....-+++.. ....++..+.+.+... |...+++..+.-
T Consensus 55 p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 55 PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG 133 (608)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC
Confidence 3445566677777776 6789999999999875543233322 2234456666666555 888888876531
Q ss_pred CCCChHhHHHH-HHHHHhcCChhhHHHHHHHHHHcC---CCcChHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCC---
Q 010236 143 FNPKLRFYNIL-LRGFLKKGLLGLGSRLLMVMEDMG---ICRNQETYEILLDYHV--NAGRLDDTWLIINEMRSKGF--- 213 (514)
Q Consensus 143 ~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~--- 213 (514)
..+-...+..+ +..+...++...|.+.++.+.... ..|....+-.++.+.. +.+..+++.+..+++.....
T Consensus 134 ~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 134 HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 11222333333 333334479999999998887642 2244445555555443 45667778777777743221
Q ss_pred ------CCChhhHHHHHHHHH--ccCChHHHHHHHHHHHH-------cC----------CC-------------CCH---
Q 010236 214 ------QLNSFVYGKVIGLYR--DNGMWKKAVGIVEEIRE-------MG----------LS-------------LDR--- 252 (514)
Q Consensus 214 ------~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~-------~~----------~~-------------~~~--- 252 (514)
.|-..+|..+++.++ ..|+++.+.+.++++.+ .. ++ +..
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~w 293 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSW 293 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEee
Confidence 234556777776554 56776677666555432 10 00 000
Q ss_pred ------HHHHHHHHH--HhccCCHHHHHHHH-------HHHH-HCCCCCC--------HHHHHHHHH---------HHHh
Q 010236 253 ------QIYNSIIDT--FGKYGELVEALEVF-------EKMQ-QESIRPD--------IVTWNSLIR---------WHCK 299 (514)
Q Consensus 253 ------~~~~~li~~--~~~~~~~~~A~~~~-------~~m~-~~~~~p~--------~~~~~~li~---------~~~~ 299 (514)
....-++.+ .+..+..+.|.+++ ++.. .....+. ...|...+. ..+-
T Consensus 294 l~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~ 373 (608)
T PF10345_consen 294 LPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFI 373 (608)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 011111221 23334443454444 4444 1111111 122322222 2245
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC-----HHHHHHHHH--HHHccCCHHHHHHHHH--------HHHhcCCCCcHHHHHHH
Q 010236 300 AGDVAKALELFTQMQEQGF-YPD-----PKIFITIIS--CLGELGKWDVIKKNFE--------NMKDRGHGKIGAIYAIL 363 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~-~p~-----~~~~~~ll~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 363 (514)
.+++..|...+++|.+..- .|+ ...+...+. .+...|+.+.|...|. .....+...+..++..+
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 6889999999998875321 111 122222232 3446789999999997 44444444444433321
Q ss_pred --HHHHHhcC--Ccch--HHHHHHHHHHc---CCCCCHHHHHHHH-HHHHhcC--CHHHHHHHHHHhh-----hCCC-CC
Q 010236 364 --VDIYGQYG--RFRD--PEECIAALKLE---GLQPSGSMFCILA-NAYAQQG--LCEQTVKVLQLME-----PEGI-EP 425 (514)
Q Consensus 364 --i~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~li-~~~~~~g--~~~~a~~~~~~~~-----~~~~-~p 425 (514)
+-.+...+ ..++ +.++++.+... ....+..++..++ .++.... ...++...+.+.. ..+. .-
T Consensus 454 Nl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 454 NLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 11222222 2223 66677665432 1112233344333 3332221 1223333332221 1110 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-c--CHHHHHH-----HHHHHHcCCCcchHHHHHHHHHh
Q 010236 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS-P--DLVTYST-----LMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p--~~~~~~~-----l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
-..+++.|...+. .|+..+..+..........+ | ....|.. +...+...|+.++|.+...+...
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1122333333333 67777766555543221111 2 3345533 33446778999999888777653
No 321
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.55 E-value=1.5 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=13.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010236 433 LINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666666554
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.19 E-value=56 Score=33.18 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHH--HHH-HHhcCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHccC-
Q 010236 163 LGLGSRLLMVMEDMGICRNQETYEIL--LDY-HVNAGRLDDTWLIINEMRS-------KGFQLNSFVYGKVIGLYRDNG- 231 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g- 231 (514)
...|.+.++...+.|- ......... ..+ +....+.+.|+..|....+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888888777653 111111111 222 4466788999999888876 44 3345556666666643
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 010236 232 ----MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC----KAGD 302 (514)
Q Consensus 232 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~ 302 (514)
+.+.|..++....+.| .|+....-..+..... ..+...|.++|......|.. ..+-.+..+|. -..+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 5677888888888776 3444443333333333 34677888888888877742 22222222221 2236
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010236 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
...|..++++..+.| .|...--...+..+.. +..+.+.-.+..+...+
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 788888888888877 3332222333333444 66666666665555544
No 323
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.75 E-value=26 Score=33.82 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHhcCCcchHHHHHHHHHH---cCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCCCH---
Q 010236 366 IYGQYGRFRDPEECIAALKL---EGLQPS-----GSMFCILANAYAQQGLCEQTVKVLQLMEP-------EGIEPNL--- 427 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~--- 427 (514)
.+.-.|++.+|.+++...-- .|...+ -..||.+.-...+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456777777777654321 121111 11234444334455556555555555442 3444422
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 010236 428 --------VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (514)
Q Consensus 428 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (514)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2333 344677889999999999988754 44588889999998874
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.39 E-value=8.6 Score=32.73 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG--ISPDLVTYSTLMKA 471 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~ 471 (514)
|.+.-++.+.+.+...+++...++-.+.. +-|..+-..++..++-.|++++|..-++-.-+.. ..+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888899999999988777763 4466677788899999999999998888775532 23345577777654
No 325
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.10 E-value=29 Score=29.13 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML-----NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
...+...+++++|...++..... |....+ --|.+.....|.+|+|+..++...+.+.. ......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 34567788888888888877653 222222 23456677889999999888876654322 222344457788
Q ss_pred cCCCcchHHHHHHHHHhCC
Q 010236 474 RAKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g 492 (514)
..|+-++|+.-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999988865
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.74 E-value=20 Score=30.13 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=47.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 010236 297 HCKAGDVAKALELFTQMQEQGFYPD-----PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (514)
+.++|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.--.+.++.+. ........-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhh
Confidence 45667777777777666653 1221 12233334455566666666666655555542 12222223344566666
Q ss_pred CcchHHHHHHHHHHc
Q 010236 372 RFRDPEECIAALKLE 386 (514)
Q Consensus 372 ~~~~A~~~~~~~~~~ 386 (514)
.+++|++-|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.73 E-value=1.8 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666665544
No 328
>PRK09687 putative lyase; Provisional
Probab=81.73 E-value=41 Score=30.57 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHccCC
Q 010236 321 DPKIFITIISCLGELGK 337 (514)
Q Consensus 321 ~~~~~~~ll~~~~~~~~ 337 (514)
+..+-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444455555544
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.24 E-value=7.4 Score=37.18 Aligned_cols=124 Identities=8% Similarity=0.060 Sum_probs=67.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 010236 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCE 409 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 409 (514)
.--...|+.-.|.+-+...+++. +.++.........+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 33345566666555444444332 222222233333455667777777776655432 2234456666777777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.|..+-+.|....++ +......-....-..|-++++.-.|++....
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 777777777665443 3333333233334456677777777776554
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.09 E-value=5.5 Score=24.13 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555543
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.08 E-value=6.1 Score=21.82 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 464 TYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 464 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355566666667777777777666655
No 332
>PRK09687 putative lyase; Provisional
Probab=79.91 E-value=47 Score=30.16 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT----LEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.....+..+.+.|. +++...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+-...+
T Consensus 39 vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 39 KRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred HHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 33344444444443 233333333332 23444444455555555542 2344444444222 24444444444
Q ss_pred HHHHh
Q 010236 155 RGFLK 159 (514)
Q Consensus 155 ~~~~~ 159 (514)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44433
No 333
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.71 E-value=38 Score=29.00 Aligned_cols=64 Identities=9% Similarity=-0.029 Sum_probs=34.6
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010236 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..+||.+.--+...|+++.|.+.|+...+.++.-+-...|.-|. +.-.|++.-|.+-|...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 45667666666777777777777777766443222112222222 22346666666655555443
No 334
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.62 E-value=1.5 Score=35.08 Aligned_cols=45 Identities=11% Similarity=0.020 Sum_probs=16.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010236 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
+.+.+.++.....++.+...+...+....+.++..|++.++.+..
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l 61 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKL 61 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHH
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHH
Confidence 333334444444444444333223333344444444444333333
No 335
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.04 E-value=83 Score=32.47 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=15.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010236 434 INAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~ 455 (514)
..-+...|++++|..+|+...+
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHCCCHHHHHHHHHHHhh
Confidence 3445678999999999987754
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.75 E-value=1.5e+02 Score=35.28 Aligned_cols=150 Identities=8% Similarity=0.035 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQM----QALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
.+..+=.+.+.+.+|+-.++.- .+. .....-+-.+...|...++++....+...-.. .|+ .+ .-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence 3444556788999999998883 221 11223344445588899998887777664211 232 22 334455
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHccCChHHH
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV-IGLYRDNGMWKKA 236 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~g~~~~a 236 (514)
...|+++.|...|+.+.+.+. +....++-++......|.++..+...+-.... ..+....++++ +.+-.+.++|+..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 678999999999999998754 34667777777777778887777655554433 12223333333 3444677777776
Q ss_pred HHHHH
Q 010236 237 VGIVE 241 (514)
Q Consensus 237 ~~~~~ 241 (514)
...+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66655
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.51 E-value=51 Score=29.71 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh-----CCCCCCHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKAR 500 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 500 (514)
++.....|..+|.+.+|.++-++....+ +.+...|..|+..+...|+--.+..-++++.+ .|+..|....
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4555677889999999999999988753 33777888999999999998888888877753 4777766544
No 338
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.48 E-value=1.5e+02 Score=35.22 Aligned_cols=319 Identities=10% Similarity=-0.013 Sum_probs=162.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 117 SLIEALASVGRTLEADAIFQEM----VCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
.+..+-.+.+.+.+|...++.- .+. .-....|-.+...|+..+++|...-+...-... |+ ...-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---PS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---cc---HHHHHHHH
Confidence 3444556778888888888873 221 122334555556899999988877776642110 22 23344556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHH
Q 010236 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSI-IDTFGKYGELVEA 271 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A 271 (514)
...|++..|...|+.+.+.+.. ...+++.++......|.++..+-..+..... ..+....++.+ +.+--+.+++|..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 7789999999999999877422 4677888888777888888777766655443 23333334332 3344566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHccCCH
Q 010236 272 LEVFEKMQQESIRPDIVTWNSL--IRWHCKAG--DVAKALELFTQMQEQGFYP--------D-PKIFITIISCLGELGKW 338 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~~~~ 338 (514)
..... +. +..+|... .....+.. +.=.-.+..+.+++.-+.| + ...|..++....-. +.
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el 1609 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-EL 1609 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HH
Confidence 55544 11 33344333 22222221 2111112333222211110 0 11222222221111 01
Q ss_pred HHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHH-HHcCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 010236 339 DVIKKNFENMKD-RGHGKIGAIYAILVDIYGQYGRFRDPEECIAAL-KLEGLQP-----SGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 339 ~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-----~~~~~~~li~~~~~~g~~~~a 411 (514)
+...+.+..... .....+..-|-.-+..-....+..+-+-.+++. ......| -..+|....+...+.|+++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 110111100000 000111111212221111111122222222211 1111121 245788888888889999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
...+-...+.+ .|. .+-....-....|+...|+.++++-.+.
T Consensus 1690 ~nall~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 98887777664 333 3455667788899999999999987743
No 339
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.80 E-value=18 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 410 QTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
+..+-+..+....+.|+......-+++|.+-+++..|.++|+-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555443
No 340
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=77.80 E-value=68 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQ 104 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~ 104 (514)
.|-.+..|...|+-.+|.+..+++.
T Consensus 217 In~~l~eyv~~getrea~rciR~L~ 241 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELG 241 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhC
Confidence 4667778888888888888777765
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.20 E-value=36 Score=27.23 Aligned_cols=52 Identities=23% Similarity=0.188 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCChHHHHHHHHHHHHc
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISY-ASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
...++++++..+++.|.-. .|+..-. ..-...+...|++.+|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3467777777777776654 3432221 22233455667777777777777654
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.80 E-value=4.7 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQAL 106 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~ 106 (514)
+...+.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555666777777777666654
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.58 E-value=5.4 Score=20.72 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=8.6
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 010236 433 LINAFGVAGKYKEALSVY 450 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~ 450 (514)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444455555554444
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.16 E-value=1.1e+02 Score=32.33 Aligned_cols=314 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH----HccCChHHHHHHHHH
Q 010236 168 RLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLY----RDNGMWKKAVGIVEE 242 (514)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~g~~~~a~~~~~~ 242 (514)
+.+..-.+.+..++ .......-..+...|..++|++---... |+.....++.-+ ...++......+.+.
T Consensus 332 eFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~ 405 (894)
T COG2909 332 EFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLKA 405 (894)
T ss_pred HHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHHh
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------HhcCChHHHHHHHHHHH
Q 010236 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWH--------CKAGDVAKALELFTQMQ 314 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--------~~~g~~~~A~~~~~~m~ 314 (514)
+...-+..++...-.-+-......++++|..++.+....-..|+...-..+...+ ...|++++|+++-+...
T Consensus 406 lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 406 LPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred CCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q ss_pred HC----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-----HHhcC--CcchHHHHHHHH
Q 010236 315 EQ----GFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI-----YGQYG--RFRDPEECIAAL 383 (514)
Q Consensus 315 ~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g--~~~~A~~~~~~~ 383 (514)
.. -..+....+..+..+..-.|++++|..+.....+..-..+...+...... +...| ...+.+..|...
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~ 565 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLI 565 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHcCCCCCHH------HHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 010236 384 KLEGLQPSGS------MFCILANAYAQQG-LCEQTVKVLQLMEPEGIEPNLVMLN--VLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 384 ~~~~~~~~~~------~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
......--.. ++..++.++.+.. ...++..-+.--......|-...+. .|+......|+.++|...++++.
T Consensus 566 ~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 566 REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q ss_pred HCCCCcCHHHHHHHHHHHHc------CCCcchHHHHHHH
Q 010236 455 DIGISPDLVTYSTLMKAFIR------AKKFHKVPEIYKQ 487 (514)
Q Consensus 455 ~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~ 487 (514)
.....++...+..-.....+ .|+...+.....+
T Consensus 646 ~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 646 RLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
No 345
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.00 E-value=36 Score=30.40 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=42.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQE--SIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLG-- 333 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 333 (514)
=|.+++..+++.+++...-+.-+. .++|. ....-|-.|.+.+++..+.++-.......-.-+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 356666666666666544333221 12322 233334446666666666666665554322222233554444433
Q ss_pred ---ccCCHHHHHHHH
Q 010236 334 ---ELGKWDVIKKNF 345 (514)
Q Consensus 334 ---~~~~~~~a~~~~ 345 (514)
-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 345566655544
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.12 E-value=74 Score=29.86 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYP---DPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
...+|..++..+.+.|.++.|...+..+...+... ++.....-.......|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888889999999998888887643111 344444556667778888888888887776
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.00 E-value=46 Score=29.77 Aligned_cols=56 Identities=9% Similarity=-0.014 Sum_probs=22.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 010236 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIR 244 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 244 (514)
|.+++..+++.+++...-+.-+.--+..+.....-|-.|.+.+++..+.++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44555555555554433333222111122233333333444444444444444443
No 348
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.79 E-value=1.2e+02 Score=31.57 Aligned_cols=145 Identities=10% Similarity=0.104 Sum_probs=75.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|.....+ .+.|++..+.++-..+..... ..-..|..+...+. ...+++....+++-. +.+.....-...+..+
T Consensus 35 ~~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 344444444 466889888888877753211 11222333322221 223443333333221 1122222333444555
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
.+.+++....+.+.. .+.+...-.....+....|+.++|......+-..|.. .+...+.++..+.+.|..
T Consensus 110 a~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 110 ARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 666777766653211 2245555567777888888888887777776554433 455666666666655543
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.76 E-value=40 Score=27.94 Aligned_cols=65 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---hcCChHHH-------HHHHHHHHHcCCCCC-hHhHHHHHHHHHhc
Q 010236 93 IDEAMALLAQMQALGFHPSSISYASLIEALA---SVGRTLEA-------DAIFQEMVCFGFNPK-LRFYNILLRGFLKK 160 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~A-------~~~~~~~~~~g~~~~-~~~~~~li~~~~~~ 160 (514)
++.|.+.++.-...+ +.|...++.-..++. +..+..++ +.-|++.+.. .|+ ..++-.+..+|...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHH
Confidence 455666666644443 455555444443333 33333334 4444444443 344 35666666666543
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=73.12 E-value=17 Score=33.22 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=34.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 365 DIYGQYGRFRDPEECIAALKLEGLQP-SGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+-|.+.|.+++|++.|...... .| +.+++..-..+|.+...+..|..-.....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3577777788887777766543 34 66666666777777777766655554444
No 351
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.61 E-value=1e+02 Score=30.26 Aligned_cols=397 Identities=14% Similarity=0.112 Sum_probs=188.2
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-SVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
-|+..|..-|..+.+.+.+.+.-.+|.+|.... +.++..|-....-.. .+-+++.|..+|...++.. +.+...|-..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHH
Confidence 388899999999888888999999999998763 334555544443333 3344899999999888764 3333444332
Q ss_pred HHHHH----h-------cC-ChhhH-HHHHHHHHH-cCCCcChHh--HHHH---HHHHHhcCCHHHHH-HHHHHHHHcCC
Q 010236 154 LRGFL----K-------KG-LLGLG-SRLLMVMED-MGICRNQET--YEIL---LDYHVNAGRLDDTW-LIINEMRSKGF 213 (514)
Q Consensus 154 i~~~~----~-------~g-~~~~A-~~~~~~~~~-~~~~~~~~~--~~~l---i~~~~~~g~~~~A~-~~~~~m~~~g~ 213 (514)
.+.-. + .| +...- .++-..-.+ ....++... ++.- ...........+-. .+.+.+...+
T Consensus 181 frmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~- 259 (568)
T KOG2396|consen 181 FRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKA- 259 (568)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccC-
Confidence 22211 0 00 00000 000000000 000011100 0000 00000001111111 1233333322
Q ss_pred CCChhhHHHHH----HHHHcc---------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------CH
Q 010236 214 QLNSFVYGKVI----GLYRDN---------------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG------EL 268 (514)
Q Consensus 214 ~~~~~~~~~ll----~~~~~~---------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------~~ 268 (514)
+-++.++..+. +.+.+. -+.+...++|++..+. -++...|+..|..+...- .+
T Consensus 260 ~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I 337 (568)
T KOG2396|consen 260 PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRI 337 (568)
T ss_pred CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 22444443332 222110 1122333555555543 345555666665553221 34
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHHH-HHH
Q 010236 269 VEALEVFEKMQQE-SIRP-DIVTWNSLIRWHCKAGDVA-KALELFTQMQEQGFYPDPKIFITIISCLGEL-GKWDV-IKK 343 (514)
Q Consensus 269 ~~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~-a~~ 343 (514)
..-..+|+..... +..+ ....|..+...++...... .|..+..+ ++.-+...+..-+....+. .+.+. -..
T Consensus 338 ~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 338 LHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHHHHHhhcchhHHHHHH
Confidence 4445555554432 2222 2334444444444443322 22232222 2333444444444433322 12221 112
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCC-cch-HHH-HHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 344 NFENMKDRGHGKIGAIYAILVDIYGQYGR-FRD-PEE-CIAALKLEGLQPSGSMF-CILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~-A~~-~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
.+......-..+....|+... .|+ .+. ... ++..+... ..|+..++ +.++..+.+.|-.++|...+..+.
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 222222221122222333322 122 111 111 22222222 23444443 456677778888899999998888
Q ss_pred hCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 420 PEGIEPNLVMLNVLINAF---GVAGKYKEALSVYHLMK-DIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.. .+|+...|..+|..= ..+| ..-+.++++.|. ..| .|+..|.-.+.--...|..+.+-.++.++.+
T Consensus 488 ~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 488 EL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 76 366777777777543 2333 777888888885 556 4777788777777788888888888777665
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.99 E-value=75 Score=28.54 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHccCChHHHHHHHHH----HHHcCCCCCHHHHH
Q 010236 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYG-------KVIGLYRDNGMWKKAVGIVEE----IREMGLSLDRQIYN 256 (514)
Q Consensus 188 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-------~ll~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 256 (514)
+.+-..+.+++++|+..+.+....|+..|..+.+ .+...|...|++...-+.... |.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHHHHH
Q 010236 257 SIIDTFGKYGE-LVEALEVFEKMQQESIRPDIVTWNS-----LIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 257 ~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
+|+..+-...+ ++.-+.+.....+...+........ +|..+.+.|++.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.90 E-value=49 Score=26.39 Aligned_cols=83 Identities=12% Similarity=0.155 Sum_probs=53.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHhHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF-----HPSSISYASLIEALASVGR-TLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
...|.++......+++...+.+++.+..... ..+..+|..++.+..+... ---+..+|..+.+.+.+.+..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777777777888877777777643210 2344567777777755544 334566777777766677777777
Q ss_pred HHHHHHHhc
Q 010236 152 ILLRGFLKK 160 (514)
Q Consensus 152 ~li~~~~~~ 160 (514)
.+|.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 777776654
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.74 E-value=1e+02 Score=29.91 Aligned_cols=209 Identities=13% Similarity=0.072 Sum_probs=97.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH--hHHHHHHHHHhc
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSSIS--YASLIEALASVGRTLEADAIFQEMVCFGFNPKLR--FYNILLRGFLKK 160 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~ 160 (514)
...++.|+.+-+..++ +.|..++... -.+.+...+..|+.+ +.+.+.+.|..|+.. .....+...++.
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3345667765544444 4565555432 233444555667765 344445556555432 112345556677
Q ss_pred CChhhHHHHHHHHHHcCCCcChH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHccCChHH
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQE---TYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV--YGKVIGLYRDNGMWKK 235 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~ 235 (514)
|+.+....+++ .|...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-
T Consensus 79 g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 79 GDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 88766555543 33211110 112333444555665 34555556666554322 1234455556677654
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHH
Q 010236 236 AVGIVEEIREMGLSLDR---QIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVT---WNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~ 309 (514)
+..++ +.|..++. .-.+ -+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+ +
T Consensus 151 v~~Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----i 217 (413)
T PHA02875 151 IELLI----DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----I 217 (413)
T ss_pred HHHHH----hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----H
Confidence 44433 34433221 1122 233344456554 3344455555554322 123344344556554 3
Q ss_pred HHHHHHCCCCCCH
Q 010236 310 FTQMQEQGFYPDP 322 (514)
Q Consensus 310 ~~~m~~~g~~p~~ 322 (514)
.+.+.+.|..++.
T Consensus 218 v~~Ll~~gad~n~ 230 (413)
T PHA02875 218 VRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHCCcCcch
Confidence 4444556665553
No 355
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=70.99 E-value=18 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=27.8
Q ss_pred cCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhc
Q 010236 474 RAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~~ 513 (514)
..|+.+.+.+++++..+.|..|.....+.+..++...|++
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777666653
No 356
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.51 E-value=34 Score=28.32 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=62.9
Q ss_pred cchHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH-------HhhhCCCCCCH-HHHHHHHHHHHHcC
Q 010236 373 FRDPEECIAALKLEGLQPSGSM---FCILANAYAQQGLCEQTVKVLQ-------LMEPEGIEPNL-VMLNVLINAFGVAG 441 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~-------~~~~~~~~p~~-~~~~~li~~~~~~g 441 (514)
++.|.+.++.-...++ .|... |...+.-+++.....++.++++ +... +.|+- .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP-~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 4556666666544442 34333 4444444555555444544444 4444 45664 67888888887654
Q ss_pred C-----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCC
Q 010236 442 K-----------YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTP 495 (514)
Q Consensus 442 ~-----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 495 (514)
. +++|.+.|++..+ ..|+..+|+.-+... ++|-++..+..+.+..+
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 3 4445555555554 568888898877765 46888888887776543
No 357
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=68.87 E-value=53 Score=29.78 Aligned_cols=41 Identities=7% Similarity=0.184 Sum_probs=19.0
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010236 414 VLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 414 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 454 (514)
+++.+.+.++.|.-..+..+.-.+.+.=.+.+.+.+|+.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444444444444444444444444444444544443
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.86 E-value=1e+02 Score=28.75 Aligned_cols=98 Identities=11% Similarity=-0.034 Sum_probs=59.2
Q ss_pred CCCHhhHHHHHHHHHhc------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010236 109 HPSSISYASLIEALASV------------GRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+-|+.+|..++..--.. .-.+.-+.+++++++.+ +.+...+...+..+.+..+.+...+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44566666666432211 11345566777777764 456667777777777777777777777777765
Q ss_pred CCCcChHhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 010236 177 GICRNQETYEILLDYHVN---AGRLDDTWLIINEM 208 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m 208 (514)
.. -+...|...|+.... .-.++....+|.+.
T Consensus 95 ~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 95 NP-GSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred CC-CChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 33 356677777665544 22355555555544
No 359
>PRK10941 hypothetical protein; Provisional
Probab=68.68 E-value=80 Score=28.45 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS-GCTPDRKARQILQSALV 508 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~a~~ 508 (514)
.+.+-.+|.+.++++.|+++.+.+....+. |+.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+.++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 355666777888888888888887775333 4555666666677888888888777777653 34566666655555554
No 360
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.21 E-value=20 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=17.6
Q ss_pred HcCCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 010236 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (514)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 504 (514)
.+.|-.+++..++++|.+.|+.-+...++.++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555666666666666655555444443
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.60 E-value=26 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010236 434 INAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.-++.+.|++++|.+..+.+.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344455555555555555544
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=67.33 E-value=25 Score=21.70 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIE 120 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 120 (514)
....+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344566777777777888877777777766666554
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.13 E-value=73 Score=26.53 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=10.7
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 010236 155 RGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~ 175 (514)
-.|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 344455555555555555544
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.05 E-value=1.9e+02 Score=31.13 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-----HHHHHH---HHHhcCChHHHHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS-----YASLIE---ALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~li~---~~~~~g~~~~A~~~~~~~~~ 140 (514)
+..=+..+.+...+++|+.+.+.... |++.. +..+.. -+..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~----~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS----PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 77778888888899999998876653 33322 222222 24578999999999998864
No 365
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.36 E-value=44 Score=34.11 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
....+.++.+-.-.+...-..++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.++|+.+.+-.+-+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444332223344445555556666666666666555443211 12234444555556666555544444444
No 366
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.90 E-value=1.1e+02 Score=27.94 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q 010236 429 MLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~ 447 (514)
+|..|+.+++.+|+.+-.+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4666777777777655443
No 367
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.56 E-value=77 Score=30.72 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 010236 227 YRDNGMWKKAVGIVEEIREMGLSLDRQI--YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIV--TWNSLIRWHCKAGD 302 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~ 302 (514)
.+..|+.+. ++.+.+.|..++... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344566554 444445566655432 2334455556676653 33444555444432 11233445566777
Q ss_pred hHHHHHHHH
Q 010236 303 VAKALELFT 311 (514)
Q Consensus 303 ~~~A~~~~~ 311 (514)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 766554443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.25 E-value=16 Score=25.34 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=21.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHH
Q 010236 439 VAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPE 483 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 483 (514)
...+.++|+..|+...+.-..+. ..++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544322221 1244455555555555555444
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.79 E-value=15 Score=18.97 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQA 105 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (514)
|..+...+...|++++|...|+...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555556666666666666665543
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.29 E-value=1.4e+02 Score=28.66 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPSSI--SYASLIEALA--SVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~A~~~~~~~~~~ 141 (514)
+..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455789999999999999887 555544 4455555554 456778899988887654
No 371
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.89 E-value=15 Score=33.12 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=27.1
Q ss_pred cCcch-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 010236 75 FSGNS-YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSIS 114 (514)
Q Consensus 75 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 114 (514)
|+..+ ||..|..-.+.||+++|+.++++..+.|+.--..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 44433 56778888888888888888888887775433333
No 372
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.82 E-value=50 Score=25.46 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 375 DPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
+..+-++.+...++.|++.+....+++|.+.+++..|.++|+-...+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455566666777888888888888888888888888888877654
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.70 E-value=1.1e+02 Score=27.41 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHH
Q 010236 357 GAIYAILVDIYGQYGRFRDPEE 378 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~ 378 (514)
+.....+...|.+.|++.+|+.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHH
Confidence 3444444444555444444443
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.36 E-value=1.6e+02 Score=29.08 Aligned_cols=165 Identities=10% Similarity=0.063 Sum_probs=90.1
Q ss_pred CChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010236 145 PKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
.|.....+++..+..+..+.-.+.+..+|...| .+...|..++..|..+ ..++-..+++++.+..+. |.+.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344455666666666666666666667776654 3556677777777766 445566666666665433 333333333
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 010236 225 GLYRDNGMWKKAVGIVEEIREMGLS-----LDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRPDIVTWNSLIRWHC 298 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 298 (514)
..|-+ ++.+.+...|.++..+=++ .-..+|..++..- ..+.|..+.+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 6666666666666544221 0122444444322 23445555555554432 22333445555556666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 010236 299 KAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~ 316 (514)
...++.+|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 677777777777765554
No 375
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.27 E-value=49 Score=27.50 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHhhhCCCCCC--HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010236 407 LCEQTVKVLQLMEPEGIEPN--LVML-----NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~--~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
-++.|+.+|+.+.+.--.|+ .... ...+-.|.+.|.+++|.+++++..+. |+......-+....+.++
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 36788888888877632221 1111 23445678888888888888887763 455555555555555444
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.02 E-value=29 Score=24.21 Aligned_cols=46 Identities=15% Similarity=0.025 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-C-HhhHHHHHHHHHhcCChHHHHHH
Q 010236 89 KLGDIDEAMALLAQMQALGFHP-S-SISYASLIEALASVGRTLEADAI 134 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~ 134 (514)
..++-++|+..+....+.-..+ + -.++..++++++..|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777666665542221 1 12455566666666666665543
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.81 E-value=20 Score=23.67 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|..-.-.+|.++.+.|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444566777777777777777766654
No 378
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.56 E-value=12 Score=29.15 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=16.4
Q ss_pred CCCcchHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010236 475 AKKFHKVPEIYKQMESSGCTPDRKARQILQSA 506 (514)
Q Consensus 475 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a 506 (514)
.|.-..|..+|++|.+.|-.||. |+.|+.+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34445566666666666666654 4444443
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.18 E-value=24 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=16.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMV 139 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 139 (514)
|-.-.-.+|.++...|++++|.+..+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334455666666666666666666554
No 380
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.05 E-value=55 Score=23.35 Aligned_cols=14 Identities=7% Similarity=0.197 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 010236 196 GRLDDTWLIINEMR 209 (514)
Q Consensus 196 g~~~~A~~~~~~m~ 209 (514)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.25 E-value=1.3e+02 Score=27.29 Aligned_cols=116 Identities=11% Similarity=0.185 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHc-cC-ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHH
Q 010236 196 GRLDDTWLIINEMRS-KGFQLNSFVYGKVIGLYRD-NG-MWKKAVGIVEEIRE-MGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 196 g~~~~A~~~~~~m~~-~g~~~~~~~~~~ll~~~~~-~g-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
....+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334566666653211 2233456666666655544 11 12222222222221 12345556666666667777777766
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 272 LEVFEKMQQE-SIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 272 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
.++++..... +...|...|..+|......|+..-...+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 6666665443 344466667777777666766655444443
No 382
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.15 E-value=8.2 Score=29.95 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010236 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (514)
.|.-.+|-.+|++|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35555666777777777766664 6666554
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.75 E-value=2.4e+02 Score=30.31 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
.|......+-+...++.+....-.++....+.++..|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34555666667777777666554555566666665554
No 384
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=60.33 E-value=28 Score=23.27 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=38.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG 126 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 126 (514)
.|....++.++..+++..-.++++..+.++.+.| ..+..+|.--++.+++..
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 3455677888888888888888888888888887 356777777777766543
No 385
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.83 E-value=1.2e+02 Score=26.52 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=12.4
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 010236 298 CKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~g 317 (514)
+..+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777665543
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.75 E-value=2.3e+02 Score=29.47 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010236 231 GMWKKAVGIVEEIREMG-LSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL 307 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 307 (514)
.+.+.|..++....... ..+. ..++..+.......+..++|...++....... +......-+..-...++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666553322 1111 12233333222332224455555554433221 2223333344444667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010236 308 ELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 308 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
..+..|.... .-...-.--+..++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7776664421 2233444455666566777777777777663
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=58.12 E-value=62 Score=32.25 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
....+.|...+|-.++.+..... .....++..+.+++.-..++++|++.|++..+
T Consensus 650 ~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 650 NLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 33334444444444444433322 11223344444444445555555555555444
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.00 E-value=88 Score=25.04 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=14.5
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
++..+.+.++.-.|.++++++.+.+...+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 3344444444455555555555544333333
No 389
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=57.92 E-value=1.2e+02 Score=28.22 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
|-.++......|.+++.+.+|++++..|..|-...-..++.
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~d 183 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVD 183 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 44444444444555555555555554444444433333333
No 390
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.82 E-value=2.6e+02 Score=29.74 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=25.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010236 259 IDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 259 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (514)
...+...|+.+++..+-.-|.+ |..++.-+.+.+.+++|++++..
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666666555544432 44556666666777776665543
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.71 E-value=97 Score=24.77 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=50.8
Q ss_pred HHHCCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 010236 103 MQALGFHPSSI--SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR 180 (514)
Q Consensus 103 m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (514)
|.+.+..++.. ..++++.-....+++...+.+++.+.... ++. +. | ..
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~--~~~------~~---------------------~-~~ 77 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLN--TDN------II---------------------G-WL 77 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhh--HHH------Hh---------------------h-hc
Confidence 34444444433 35677777777777777777777663211 100 00 0 02
Q ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 010236 181 NQETYEILLDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 181 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 230 (514)
+...|..++.+...... --.+..+|.-|.+.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 33455555555544443 334445555555555566666666666655544
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=57.55 E-value=1.5e+02 Score=26.94 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=42.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 010236 264 KYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE----L 335 (514)
Q Consensus 264 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 335 (514)
..+++..+...+......+ +......+...|.. ..+..+|.++|..+.+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4456777777777766543 22233333333332 23466677777766655432 222223333332 2
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 010236 336 GKWDVIKKNFENMKDRGH 353 (514)
Q Consensus 336 ~~~~~a~~~~~~~~~~~~ 353 (514)
.+..+|...++...+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 255666666666666553
No 393
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.38 E-value=3.2e+02 Score=30.27 Aligned_cols=128 Identities=13% Similarity=0.066 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 010236 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPS----GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 434 (514)
-|...++.+.+.+..+.+.++-....+. ..++ ..+++.+.......|.+-+|.+.+-.-.+. .........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 4667778888888888888887776654 2222 345666777777778888777765442221 12234567777
Q ss_pred HHHHHcCCHHH------------HHH-HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHH-HHHHH
Q 010236 435 NAFGVAGKYKE------------ALS-VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEI-YKQME 489 (514)
Q Consensus 435 ~~~~~~g~~~~------------A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 489 (514)
-.++.+|.++. ... +++..-+....-....|+.|-.-+...+++.+|-.+ |+...
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 77777777544 333 333322222221233466666666788888877654 44443
No 394
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=56.30 E-value=1.6e+02 Score=26.91 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++..+.+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444555555555555555554 344445566667778888888887777654
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.21 E-value=25 Score=31.79 Aligned_cols=29 Identities=38% Similarity=0.500 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010236 291 NSLIRWHCKAGDVAKALELFTQMQEQGFY 319 (514)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 319 (514)
+..|..-.+.||+++|+.++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34455555555555555555555554444
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.39 E-value=58 Score=23.61 Aligned_cols=53 Identities=23% Similarity=0.202 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHHHHH----CCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 88 CKLGDIDEAMALLAQMQA----LGFHPS----SISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~----~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.+.|++.+|++.+.+.-+ .+.... ......+.......|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567888888666555433 222221 12223344455667788888777777654
No 397
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.96 E-value=2.2e+02 Score=28.14 Aligned_cols=164 Identities=12% Similarity=0.177 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010236 216 NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (514)
Q Consensus 216 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (514)
|.....+++..+..+..+.-...+..++...| .+...|..++..|... .-++-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555556666666666666666666665543 2455555566655555 444555555555554321 2222233333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHH
Q 010236 296 WHCKAGDVAKALELFTQMQEQGFYPD------PKIFITIISCLGELGKWDVIKKNFENMKD-RGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 368 (514)
.|-+ ++.+++..+|.+.... +.|. ...|..+.... ..+.+....+..++.+ .|...-...+..+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 5555565666555543 1111 01222222111 2234444444444432 232333334444444555
Q ss_pred hcCCcchHHHHHHHHHHcC
Q 010236 369 QYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~ 387 (514)
...++.+|++++..+.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5555555555555555443
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.80 E-value=72 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010236 187 ILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
.++..+...++.-.|.++++++.+.+...+..|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344444444444455555555554444433333
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.94 E-value=69 Score=32.47 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCcCHHHHHHH
Q 010236 397 ILANAYAQQGLCEQTVKVLQLMEPEG--IEPNLVMLNVLINAFGVAGKYK------EALSVYHLMKDIGISPDLVTYSTL 468 (514)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~~~~~l 468 (514)
+|..+|...|++..+.++++.+.... -+.=...||..|+.+.+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67888888888888888888877642 2223456777788888887643 3444444433 44467777777
Q ss_pred HHHHHc
Q 010236 469 MKAFIR 474 (514)
Q Consensus 469 ~~~~~~ 474 (514)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665544
No 400
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.84 E-value=2.9e+02 Score=29.00 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc
Q 010236 119 IEALASVGRTLEADAIFQEMVCFGFNP---KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA 195 (514)
Q Consensus 119 i~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (514)
|+-+.+.+.+++|+.+-+.... ..| -...+...|..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 5566677788888877655432 233 234567777888888888888888877776 4566676666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 010236 196 GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 229 (514)
++......+ +.......++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443222 2222223456667777666655
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.54 E-value=2.3e+02 Score=27.76 Aligned_cols=125 Identities=15% Similarity=0.066 Sum_probs=77.6
Q ss_pred HHHHHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010236 84 IQYCCKLGDIDEAMA-LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 84 i~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
|.--...|++..|-+ ++..+....-.|+.....+.| ....|+++.+.+.+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333345577766654 444444433344444444333 45678888888887765442 23445677788888888999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010236 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
+++|...-+-|....++ +...........-..|-++++.-.|+++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999988888876653 33333333333345567788888888776553
No 402
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.46 E-value=45 Score=28.21 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=15.3
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 109 HPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.|+...|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.66 E-value=1.4e+02 Score=25.14 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCccCcchHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010236 71 SGEEFSGNSYNKSIQYCCKL----GDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
.|.-++...+|.++..+.+. ++++-++.+=.+...++..++ ......-+..|-+.|++.+--.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Q ss_pred CCCChHhHHHHHHHHHhcCChhh-----HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010236 143 FNPKLRFYNILLRGFLKKGLLGL-----GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 217 (514)
.+|-+.++++. |..+.+.-++ ...+.|......-++.-..+++-+.+ =-
T Consensus 79 ------------~gce~~~dlq~~~~~va~~Ltkd~Kd----k~~vPFceFAetV~k~~q~~e~dK~~----------LG 132 (233)
T PF14669_consen 79 ------------MGCEKFADLQRFCACVAEALTKDSKD----KPGVPFCEFAETVCKDPQNDEVDKTL----------LG 132 (233)
T ss_pred ------------hhcCCHHHHHHHHHHHHHHHHhcccc----cCCCCHHHHHHHHhcCCccchhhhhh----------hh
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010236 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREM--------------GLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
.+-.+++..|.+..+|.++.++++.+.+. +..+--...|.....+.+.|.+|.|+.++++
T Consensus 133 RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 133 RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.60 E-value=73 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666667777777777777666666655
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.56 E-value=1.3e+02 Score=30.20 Aligned_cols=151 Identities=15% Similarity=0.053 Sum_probs=88.6
Q ss_pred CChHhHHHHHHHHHhc--CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010236 145 PKLRFYNILLRGFLKK--GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (514)
Q Consensus 145 ~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 222 (514)
|+..+..+++.-.... ..-+-+..++..|... ..|--...|...-.....|+...|...+.........-..+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 4444544444333221 1223455555555541 223333334334444557888888887777655433334445555
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010236 223 VIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHC 298 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 298 (514)
|.+...+.|....|-.++.+.+... .....++..+.++|.-..+++.|++.|++..+... .+.+.-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 6666777777777888877776654 44556677778888888888888888888776532 24555555554444
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.29 E-value=98 Score=22.88 Aligned_cols=50 Identities=12% Similarity=-0.015 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 401 AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.+...|+|++|..+.+... .||...|-.|- -.+.|..+.+..-+.+|...
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 3445556666655554442 45555554332 23445555555444444443
No 407
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.92 E-value=2.1e+02 Score=26.60 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=10.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 010236 434 INAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.+++...|+.+++.+++++..+
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 3344444555555555554443
No 408
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.82 E-value=1.5e+02 Score=28.32 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=37.2
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHh--cCCcchHHHHHHHHHHc
Q 010236 330 SCLGELGKWDVIKKNFENMKDRGHGKIGA--IYAILVDIYGQ--YGRFRDPEECIAALKLE 386 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 386 (514)
..+.+.+++..|.++++.+... ++.+.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455778888888888888876 444443 45555555543 55677788888876654
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.28 E-value=95 Score=22.46 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=11.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 010236 434 INAFGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 434 i~~~~~~g~~~~A~~~~~~m~ 454 (514)
.......|++++|.+.+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666666553
No 410
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.73 E-value=2.7e+02 Score=27.46 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=78.3
Q ss_pred HHHhcCCHHHHHHHHHHhh---hCC--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCcCH---
Q 010236 401 AYAQQGLCEQTVKVLQLME---PEG--IEP---NLVMLNVLINAFGVAGKYKEALSVYHLMKD-------IGISPDL--- 462 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~---~~~--~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~--- 462 (514)
-+...|++.+|.+++...- ..| +.| ....||.|...+.+.|.+.-+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3556799999999886542 122 122 223467888888888888888888887753 4655532
Q ss_pred --------HHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhc
Q 010236 463 --------VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (514)
Q Consensus 463 --------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~~ 513 (514)
.+||. .-.|...|++-.|.+.|.+.... +.-++..|-.+.++|....+.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQK 385 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhh
Confidence 23443 34578899999999999998864 667888999999998876553
No 411
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=49.62 E-value=2.5e+02 Score=27.19 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCC
Q 010236 431 NVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 492 (514)
..|+.-|...|++.+|...++++-- .+--..+.+.+++.+.-+.|+-...+.+++..-+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4566667777888888877765421 011134566677777777776555666666554444
No 412
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.07 E-value=3.2e+02 Score=28.25 Aligned_cols=196 Identities=11% Similarity=0.092 Sum_probs=113.8
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCC--HhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChH-
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQA-LGFHPS--SISYASLIEALA-SVGRTLEADAIFQEMVCFGFNPKLR- 148 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~- 148 (514)
+.+...|..||. -|++.++.+.+ ...+|. ..++.-+...+. ...+++.|...+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 334556666665 45666666663 333333 335566666666 7889999999999876543223221
Q ss_pred ----hHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCcChHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCC
Q 010236 149 ----FYNILLRGFLKKGLLGLGSRLLMVMEDMG----ICRNQETYEIL-LDYHVNAGRLDDTWLIINEMRSKG---FQLN 216 (514)
Q Consensus 149 ----~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~ 216 (514)
....++..+.+.+... |...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+.... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234566666666655 888888766531 11222233333 333334489999999998886543 2333
Q ss_pred hhhHHHHHHHHH--ccCChHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 010236 217 SFVYGKVIGLYR--DNGMWKKAVGIVEEIREMGL---------SLDRQIYNSIIDTFG--KYGELVEALEVFEKMQ 279 (514)
Q Consensus 217 ~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~ 279 (514)
..++..++.+.. ..+..+++.+.++++..... .|...+|..+++.++ ..|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444554443 45667777777777643211 234667777776654 5667666666655543
No 413
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.31 E-value=2.7e+02 Score=27.09 Aligned_cols=47 Identities=26% Similarity=0.175 Sum_probs=28.8
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 290 WNSLIRWHCK---AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 290 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
+..++.++.+ .++.+.|+.++..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 3344444444 4788888888888888887766544444444444433
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.21 E-value=1e+02 Score=22.11 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=4.6
Q ss_pred ChHHHHHHHHHH
Q 010236 302 DVAKALELFTQM 313 (514)
Q Consensus 302 ~~~~A~~~~~~m 313 (514)
+.+.|.+++..+
T Consensus 51 ~~~~ar~LL~~L 62 (88)
T cd08819 51 NESGARELLKRI 62 (88)
T ss_pred cHHHHHHHHHHh
Confidence 333333333333
No 415
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.88 E-value=2.7e+02 Score=27.04 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCC
Q 010236 196 GRLDDTWLIINEMRSKGFQLN 216 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~~~ 216 (514)
.+.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554443
No 416
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=47.50 E-value=2.1e+02 Score=25.63 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQAL 106 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (514)
-.+.++..+.+.+....|+.+.+.+...
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l 111 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL 111 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC
Confidence 4567999999999999999999888753
No 417
>PRK10941 hypothetical protein; Provisional
Probab=47.33 E-value=2.2e+02 Score=25.74 Aligned_cols=78 Identities=9% Similarity=-0.156 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCcChHhHHHHHHHHH
Q 010236 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG-ICRNQETYEILLDYHV 193 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~ 193 (514)
.+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..-++...+.- -.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3456667788888888888888888764 4455556666667888888888888777776543 2344555555554443
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.12 E-value=14 Score=33.93 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=66.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHH
Q 010236 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWL 203 (514)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 203 (514)
..|.++.|++.|...++.. ++....|.--.+.+.+.++...|++=+....+.+. -....|-.--.+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~-Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP-DSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCc-ccccccchhhHHHHHhhchHHHHH
Confidence 5677888888888888765 56667777777888888888888888777776432 112233333344455688888888
Q ss_pred HHHHHHHcCCCCChhhHH
Q 010236 204 IINEMRSKGFQLNSFVYG 221 (514)
Q Consensus 204 ~~~~m~~~g~~~~~~~~~ 221 (514)
.+....+.++.+....+.
T Consensus 204 dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHhccccHHHHHHH
Confidence 888888877665554443
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.10 E-value=54 Score=31.75 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=69.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS-YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
-.+.+.+.++++.|+.++-+..+. .||-.. |..-..++.+.+++..|+.=+..+++.. +-....|---..++.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 345566778999999999999987 465443 4444478889999999988888777754 222223333334455556
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 67777777777665 456766666555544
No 420
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.26 E-value=76 Score=20.16 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=11.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 010236 294 IRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~ 315 (514)
.-++.+.|++++|.+..+.+.+
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3345555555555555555554
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.05 E-value=1.4e+02 Score=30.51 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=59.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCChh------hHHHHHHHHHHcCCCcChHhHHHH
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLG------LGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+++.+|..+|++..+.++++...... -+.-...+|..|+...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 88999999999999999999987642 2233456788888888888764 2333333333 34577788877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 010236 189 LDYHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~ 210 (514)
+.+....-.-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7766553333334444555443
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.65 E-value=1.3e+02 Score=26.80 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010236 431 NVLINAFGVAGKYKEALSVYHLMKD----IGI-SPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 431 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
-.+..-|.+.|++++|.++|+.+.. .|- .+...+...+..++.+.|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566677888888888888887732 121 223445566677777788777766654444
No 423
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.43 E-value=1e+02 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 010236 71 SGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASL 118 (514)
Q Consensus 71 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 118 (514)
+|..|+ +|+.+.++...++|+++.+-|.++| ..+...-+.|
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456664 6777888999999999999999988 4454443333
No 424
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.54 E-value=85 Score=20.73 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=6.1
Q ss_pred cCChHHHHHHHHHHH
Q 010236 125 VGRTLEADAIFQEMV 139 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~ 139 (514)
.|++-+|-++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 344444444444443
No 425
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=2.4e+02 Score=24.83 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=74.0
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHH
Q 010236 262 FGKYGELVEALEVFEKMQQESIRPDIV-TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI-TIISCLGELGKWD 339 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~ 339 (514)
|....+++.|...|.+.... .|+.. -|+.-+.++.+..+++.+.+--....+ +.|+..--. .+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 55566788888877766654 56664 455667777888888888766666655 456654433 3344556677788
Q ss_pred HHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010236 340 VIKKNFENMKD----RGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 340 ~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
.|+..+.+... ..+++.......|..+--+.=...+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 88888777632 3444555566666665444444455555555543
No 426
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=41.72 E-value=3.6e+02 Score=26.70 Aligned_cols=390 Identities=13% Similarity=0.131 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010236 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFG-FNPKLRFYNILLRGFLKKGLLGLGSRLLMVM 173 (514)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 173 (514)
+...+|+....+ +..|+..|...+.-+-+.+.+.+...+|.+|.... ..||..++.+. .-|-..-.++.|..+|.+-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 445566665554 34588999999988888888999999999998743 34444444332 2233344488888888887
Q ss_pred HHcCCCcChHhHHHHHHHHH----hc--------CCHHHH-HHHHHHHH-HcCCCCChhh--HHHH-H--HHHHccCChH
Q 010236 174 EDMGICRNQETYEILLDYHV----NA--------GRLDDT-WLIINEMR-SKGFQLNSFV--YGKV-I--GLYRDNGMWK 234 (514)
Q Consensus 174 ~~~~~~~~~~~~~~li~~~~----~~--------g~~~~A-~~~~~~m~-~~g~~~~~~~--~~~l-l--~~~~~~g~~~ 234 (514)
.+.++ .++..|-...+.-. +. ++.++- .++-+.-. .....++... +..- + ..........
T Consensus 167 LR~np-dsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFNP-DSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHH
Confidence 77543 23334433322111 00 000000 00000000 0000111100 0000 0 0000000000
Q ss_pred HH-HHHHHHHHHcCCCCCHHHHHHHH----HHHh---------------ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010236 235 KA-VGIVEEIREMGLSLDRQIYNSII----DTFG---------------KYGELVEALEVFEKMQQESIRPDIVTWNSLI 294 (514)
Q Consensus 235 ~a-~~~~~~~~~~~~~~~~~~~~~li----~~~~---------------~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 294 (514)
+. ..+.+.+.. +.+.++.+|.-+. +.+. -..+.+....+|++..+. -|+...|+..|
T Consensus 246 el~k~i~d~~~~-~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI 322 (568)
T KOG2396|consen 246 ELQKNIIDDLQS-KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYI 322 (568)
T ss_pred HHHHHHHHHHhc-cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 00 111222222 1222332222221 1111 011233344666666543 34556666666
Q ss_pred HHHHhcC------ChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHccCCHH-HHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010236 295 RWHCKAG------DVAKALELFTQMQEQ-GFYP-DPKIFITIISCLGELGKWD-VIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 295 ~~~~~~g------~~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
..|...- .+.....+++...+. +..+ ....|..+.-.++...... .|..+..+ ++..+...|-.-+.
T Consensus 323 ~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~ 398 (568)
T KOG2396|consen 323 TFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQ 398 (568)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHH
Confidence 6654332 234445555555543 2333 2345555555555554433 22332222 23344555554444
Q ss_pred HHHhcC-Ccch-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHH--HHHHHHhhhCCCCCCHHHH-HHHHHHHHH
Q 010236 366 IYGQYG-RFRD-PEECIAALKLEGLQPSGSMFCILANAYAQQGL-CEQT--VKVLQLMEPEGIEPNLVML-NVLINAFGV 439 (514)
Q Consensus 366 ~~~~~g-~~~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a--~~~~~~~~~~~~~p~~~~~-~~li~~~~~ 439 (514)
...+.. +++- -.+++..+...-..+....|+... .|+ .... ..++...... ..|+..|+ +.++.-+.+
T Consensus 399 ~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e 472 (568)
T KOG2396|consen 399 VLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYE 472 (568)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHH
Confidence 443221 2111 122333333332233333444433 222 2111 1222333333 25566554 567888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--cCCCcchHHHHHHHHHh-CCCCCCHHHHHHH
Q 010236 440 AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI--RAKKFHKVPEIYKQMES-SGCTPDRKARQIL 503 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~l 503 (514)
.|-..+|...+..+... ++|+...|..++..-. .+-+...+.++|+.|.. .| .|+..|.-.
T Consensus 473 ~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y 536 (568)
T KOG2396|consen 473 SGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDY 536 (568)
T ss_pred hcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHH
Confidence 99999999999999886 5567888888776432 22237888999999885 46 555555443
No 427
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.15 E-value=2.5e+02 Score=24.69 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=16.1
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCC
Q 010236 262 FGKYGELVEALEVFEKMQQESIRPD 286 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~~~p~ 286 (514)
-+..+++.+|+++|++.....+..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch
Confidence 3456677788888887766544333
No 428
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.07 E-value=2e+02 Score=26.29 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh----------cCCHHHH
Q 010236 132 DAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----------AGRLDDT 201 (514)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~g~~~~A 201 (514)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+.. |..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888888888888887777777777788888899988875 44446666666653 5888888
Q ss_pred HHHHHH
Q 010236 202 WLIINE 207 (514)
Q Consensus 202 ~~~~~~ 207 (514)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 887765
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.96 E-value=1.5e+02 Score=22.21 Aligned_cols=26 Identities=35% Similarity=0.439 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHH
Q 010236 360 YAILVDIYGQYGRFRDPEECIAALKL 385 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~ 385 (514)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666667777777777666655
No 430
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.85 E-value=3.6e+02 Score=28.27 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=51.5
Q ss_pred chHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CC----------CCHHHHHHHHHHHHH
Q 010236 374 RDPEECIAAL-KLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG---IE----------PNLVMLNVLINAFGV 439 (514)
Q Consensus 374 ~~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~----------p~~~~~~~li~~~~~ 439 (514)
++....+..+ ...|+..+......++... .|+...++.+++++...| +. .+......|+.++.
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~- 257 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII- 257 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH-
Confidence 4445555544 3457777777776666543 689999999998876532 11 11122333444443
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC
Q 010236 440 AGKYKEALSVYHLMKDIGISPD 461 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p~ 461 (514)
.++...++.+++++.+.|..+.
T Consensus 258 ~~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 NQDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred cCCHHHHHHHHHHHHHhCCCHH
Confidence 3777888888888877776543
No 431
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.67 E-value=2.4e+02 Score=24.39 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCc----CH-HHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 010236 430 LNVLINAFGVAGK-------YKEALSVYHLMKDIGISP----DL-VTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 430 ~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p----~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (514)
+--+.+.|...|+ ...|.+.|++..+..-.| +. ...-.+.....+.|+.++|.+.|.+....+-.+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 3444455555555 334555555544322111 22 2233344555677888888888887776544333
No 432
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.39 E-value=4e+02 Score=26.52 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 010236 426 NLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV 463 (514)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 463 (514)
+...+..++.+....+....|+.+++++.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55555666666665555678888888888888765543
No 433
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=39.33 E-value=56 Score=31.62 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=55.2
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCC
Q 010236 365 DIYGQYGRFRDPEECIAALKLEGLQPSGSMF-CILANAYAQQGLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGK 442 (514)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 442 (514)
.-+.+.+.++.|..++.++++. .|+...| ..-..++.+.+++..|+.=+..+.+.. |+ ...|---..++.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 3344566677777777777655 3433333 333356666677777666666555542 22 2233333344445555
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 443 YKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
+.+|+..|+.... +.|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 6666666655544 4566555555555443
No 434
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=39.28 E-value=1.6e+02 Score=21.85 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010236 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
..+...|++++|..+.+.+. .||...|-.+-. .+.|..+++...+..|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34555666666666655542 466666655433 34555555555555555544
No 435
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.58 E-value=2e+02 Score=22.78 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 389 QPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEG-IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 389 ~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.++..+-..+..++.+.. +..+.+.+++...+.. ..-+......|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444445555555544 3445566666666421 1112233344555667777777777777766653
No 436
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.01 E-value=3.4e+02 Score=25.29 Aligned_cols=76 Identities=11% Similarity=-0.041 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHH
Q 010236 200 DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK---YGELVEALEVFE 276 (514)
Q Consensus 200 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~ 276 (514)
.-+.++++.++.+. -+......++..+.+..+.+...+-++++.... +-+...|...++.... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34445555555522 244555556666666666666666666666553 2355556555554432 123444444444
Q ss_pred H
Q 010236 277 K 277 (514)
Q Consensus 277 ~ 277 (514)
+
T Consensus 127 ~ 127 (321)
T PF08424_consen 127 K 127 (321)
T ss_pred H
Confidence 4
No 437
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.86 E-value=3e+02 Score=26.46 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010236 266 GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA 300 (514)
Q Consensus 266 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 300 (514)
|+.+.-..+|--....-..|....|..+..-|.+.
T Consensus 363 g~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~ke 397 (525)
T KOG3677|consen 363 GDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKE 397 (525)
T ss_pred CChHHHHHHHHHcCccccCCCCccccccccccccc
Confidence 55555444444444433445555555555544443
No 438
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.77 E-value=2.3e+02 Score=23.35 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=32.7
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcc
Q 010236 419 EPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479 (514)
Q Consensus 419 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 479 (514)
.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|.---+..+...|-..
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344554444322 334444444555566777777766666556555555556666666544
No 439
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.51 E-value=99 Score=20.69 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 425 PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
|....++.++..+++..-.++++..+.++.+.|.- +..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 44445556666666666666666666666555542 4444444444433
No 440
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.49 E-value=3.3e+02 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=16.3
Q ss_pred HCCCCCCHhhHHHHHH-HHHhcCC-hHHHHHHHHHHH
Q 010236 105 ALGFHPSSISYASLIE-ALASVGR-TLEADAIFQEMV 139 (514)
Q Consensus 105 ~~~~~~~~~~~~~li~-~~~~~g~-~~~A~~~~~~~~ 139 (514)
..| .|+...++.+.+ .+.+.|= ..-|.++|+.-.
T Consensus 159 ~nG-t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~ 194 (412)
T KOG2297|consen 159 SNG-TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWL 194 (412)
T ss_pred hCC-CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHH
Confidence 335 455555555553 3444442 233556666544
No 441
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.20 E-value=1.5e+02 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=8.4
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 010236 189 LDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~ 207 (514)
+..|...++.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444555555544444
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.04 E-value=2e+02 Score=25.57 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=28.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc----C-CCcChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQETYEILLDYHVNAGRLDDTWLIINEM 208 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 208 (514)
+...|.+.|+++.|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--++
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555555555555555555321 1 1123344455556666666666666554444
No 443
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.92 E-value=5e+02 Score=26.93 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=49.4
Q ss_pred hHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C------------CCHHHHHHHHHHHHHc
Q 010236 375 DPEECIAAL-KLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGI-E------------PNLVMLNVLINAFGVA 440 (514)
Q Consensus 375 ~A~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~------------p~~~~~~~li~~~~~~ 440 (514)
+..+.+... ...|+..+......++. ...|+...++.++++....+- . ++......++.++. .
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~-~ 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA-Q 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-c
Confidence 344444443 45577767766666665 356899999998877654331 1 11222233344333 4
Q ss_pred CCHHHHHHHHHHHHHCCCCcC
Q 010236 441 GKYKEALSVYHLMKDIGISPD 461 (514)
Q Consensus 441 g~~~~A~~~~~~m~~~~~~p~ 461 (514)
|+...++++++++.+.|..+.
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 777788888888877766543
No 444
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.76 E-value=4.4e+02 Score=28.11 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=48.6
Q ss_pred chHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---C----------CCCHHHHHHHHHHHHH
Q 010236 374 RDPEECIAALK-LEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG---I----------EPNLVMLNVLINAFGV 439 (514)
Q Consensus 374 ~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~----------~p~~~~~~~li~~~~~ 439 (514)
++..+.++.+. ..++..+......++. ...|++..|+.++++....+ + ..+...+..++..+ .
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~ 257 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-A 257 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 44555555543 3566656665554443 34789999999988765432 1 12222233344433 3
Q ss_pred cCCHHHHHHHHHHHHHCCCCc
Q 010236 440 AGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~~p 460 (514)
.|+..+++.+++++...|+.+
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 258 AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred cCCHHHHHHHHHHHHHhCCCH
Confidence 477777777777777766653
No 445
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.04 E-value=4.7e+02 Score=26.36 Aligned_cols=83 Identities=17% Similarity=0.178 Sum_probs=49.2
Q ss_pred HHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CC----------CCHHHHHHHHHHHHHcCC
Q 010236 377 EECIAA-LKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG---IE----------PNLVMLNVLINAFGVAGK 442 (514)
Q Consensus 377 ~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~----------p~~~~~~~li~~~~~~g~ 442 (514)
...+.. +...|+..+......++.. ..|+...|..+++++...| +. ++......++.++. .|+
T Consensus 184 ~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d 260 (509)
T PRK14958 184 AAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKA 260 (509)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCC
Confidence 333333 3455776666666655544 3689999999998765543 11 11122233444333 477
Q ss_pred HHHHHHHHHHHHHCCCCcCH
Q 010236 443 YKEALSVYHLMKDIGISPDL 462 (514)
Q Consensus 443 ~~~A~~~~~~m~~~~~~p~~ 462 (514)
.+.+..+++++.+.|..|..
T Consensus 261 ~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 261 GDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHHHHHHHcCCCHHH
Confidence 88888888888887776543
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=35.41 E-value=3.3e+02 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=13.9
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHH
Q 010236 146 KLRFYNILLRGFLKKGLLGLGSRLL 170 (514)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~ 170 (514)
|......+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455566666666666666665544
No 447
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.37 E-value=1.6e+02 Score=20.66 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCCccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 010236 70 NSGEEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSI 113 (514)
Q Consensus 70 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 113 (514)
.+|..|+ +++.+.++.--++|+++++-|.++| ..+..
T Consensus 30 ~~gy~Pt------V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 30 FSGYNPT------VIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred cCCCCch------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4566664 6778888899999999999999988 34443
No 448
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.20 E-value=1.3e+02 Score=22.67 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcc
Q 010236 433 LINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFH 479 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 479 (514)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555566666666666555555555555555666655443
No 449
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.98 E-value=1.7e+02 Score=20.92 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
++|+-....|+..|+..|..++..+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666665555555555666666653
No 450
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=34.82 E-value=1.4e+02 Score=22.34 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 396 CILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 455667777788888888887764
No 451
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.47 E-value=4.4e+02 Score=25.61 Aligned_cols=236 Identities=11% Similarity=-0.029 Sum_probs=118.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG 161 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 161 (514)
.-|+++...| ..+++.+-...... ++...+.....++....+ ..+.+.+-.... .++..+-.....++.+.+
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~-~~~~~~L~~~L~---d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQED-ALDLRSVLAVLQ---AGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCC-hHHHHHHHHHhc---CCCHHHHHHHHHHHhcCC
Confidence 3477777777 56777776666432 333334333334433322 232333333332 355556777777777777
Q ss_pred ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 010236 162 LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVE 241 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 241 (514)
..+....+...+.. ++.......+.++...+. .+...+....+ .+|...-...+.++...+.. .+...+.
T Consensus 115 ~~~a~~~L~~~L~~----~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~-~a~~~L~ 184 (410)
T TIGR02270 115 GRQAEPWLEPLLAA----SEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRR-LSESTLR 184 (410)
T ss_pred chHHHHHHHHHhcC----CChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccc-cchHHHH
Confidence 65555444444432 344444455555554331 23333333333 34555556666666666654 3333333
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010236 242 EIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD 321 (514)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 321 (514)
.+.. ..|..+-..-+.+....|. ++|...+...... ++......+....... ..+++.+.+..+.+.
T Consensus 185 ~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d----- 251 (410)
T TIGR02270 185 LYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQA----- 251 (410)
T ss_pred HHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhC-CchhHHHHHHHHhcC-----
Confidence 4433 3455555666666677776 5666555553221 2222222222222222 233666666665543
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010236 322 PKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
..+-...+.++.+.|+...+..+.+.+
T Consensus 252 ~~vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 252 AATRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred hhhHHHHHHHHHHcCCcchHHHHHHHh
Confidence 224555666666777666555544444
No 452
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=34.07 E-value=76 Score=16.65 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHC
Q 010236 92 DIDEAMALLAQMQAL 106 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~ 106 (514)
+++.|..+|+++...
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 445555555555543
No 453
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.06 E-value=2.2e+02 Score=22.05 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCCcchHHHHHH
Q 010236 408 CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD-LVTYSTLMKAFIRAKKFHKVPEIYK 486 (514)
Q Consensus 408 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 486 (514)
++++.+.|....... |..-|-.+--.|++.-+ ++.++|+.|...|+--. ...|......+...|++++|.++++
T Consensus 49 Ler~~~~f~~~~~Y~---nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 49 LERCIRKFKDDERYK---NDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHTTSGGGT---T-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhhhHhhc---CCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred HHH
Q 010236 487 QME 489 (514)
Q Consensus 487 ~m~ 489 (514)
.-+
T Consensus 124 ~Gi 126 (126)
T PF08311_consen 124 LGI 126 (126)
T ss_dssp HHH
T ss_pred hhC
No 454
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.00 E-value=2.3e+02 Score=23.42 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhh
Q 010236 196 GRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
++.-.|.++++.+.+.+..++..|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcch
Confidence 333444444444444444444333
No 455
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.85 E-value=3.7e+02 Score=24.57 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 196 (514)
.++....+.++.....+.+..+.. ...-...+......|++..|+++.....+.- -.-.-|+.+=.. ..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L---~~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHL---SS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHH---hH
Confidence 344445555555555555555432 2334445666667777777777776655420 011111111111 11
Q ss_pred CHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHccCChHHHHHHH
Q 010236 197 RLDDTWLIINEMRSK-----GFQLNSFVYGKVIGLYRDNGMWKKAVGIV 240 (514)
Q Consensus 197 ~~~~A~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 240 (514)
++++-.....++.+. -..-|+..|..+..+|.-.|+.+.+.+-+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 122222222222111 11347888888888888888766655333
No 456
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.83 E-value=25 Score=32.33 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=71.5
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~ 447 (514)
..|.++.|++.|-..+..+ .+....|..-.+++.+.+....|++=+....+. .||. .-|-.-..+..-.|++.+|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4577888888887777664 244555555666777777777787777766654 4443 23333334445568888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..|....+.++.+....| +=...-+.+..++-...+++..+
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 888888777665544333 22333445555555555555544
No 457
>PRK09857 putative transposase; Provisional
Probab=33.22 E-value=2.7e+02 Score=25.57 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=26.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 010236 439 VAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (514)
..++.++-.++++.+.+. ........-++..-+.+.|.-+++.++.++|...|+.++
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444444444444332 111222333444444444444556666666666666544
No 458
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.73 E-value=4.1e+02 Score=24.70 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH----hcCCCCcHHHHHHHHH-HHHhcCCcchHHHHHHHHHHcCCCCCH----HHHH
Q 010236 326 ITIISCLGELGKWDVIKKNFENMK----DRGHGKIGAIYAILVD-IYGQYGRFRDPEECIAALKLEGLQPSG----SMFC 396 (514)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ 396 (514)
.....-|++.|+.+.|.+.++... ..|...|+..+..-+. .|....-+.+-++..+.+.+.|-..+. .+|.
T Consensus 108 ~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~ 187 (393)
T KOG0687|consen 108 LRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQ 187 (393)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHH
Confidence 344445666666666655554433 2344444443332222 122222233444444444444443322 2333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 010236 397 ILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
.+- |....++.+|-.+|-+..
T Consensus 188 Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 188 GLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHH--HHHHHhHHHHHHHHHHHc
Confidence 221 233446666666665544
No 459
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.48 E-value=4.1e+02 Score=24.67 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----
Q 010236 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPDIVTWNSLIRW-HCKAGDVAKALELFTQMQEQGFYPDP---- 322 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~---- 322 (514)
...+-....-||+-|+.+.|++.+.+..++ |.+-|++-+..-+.. |....-+.+-++..+.+.+.|-..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 345566677899999999999888776543 666677665544433 33333355666666677777765543
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 323 KIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.+|..+- |....++.+|-.+|-+....
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 2333332 23345778888877776543
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.07 E-value=1.4e+02 Score=31.59 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=28.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010236 124 SVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 124 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
..|+++.|++.-.++ .|..+|..|.....+.|+.+-|+..|++.+.
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 445555555443332 4556677777777777777777777766654
No 461
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.87 E-value=4.3e+02 Score=24.69 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010236 268 LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG------DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 341 (514)
++++..++++....+. |........|.++-... +|.....+|+-+.. +.|++++-..-.-+..+....+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhHHhH
Q ss_pred HHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHH
Q 010236 342 KKNFENMKDR-GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMF 395 (514)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 395 (514)
..+.+.+... ........+..-.+.+.+.|+.++|..-|+.....-..+-...|
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.79 E-value=2.2e+02 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
|..|+.-|...|..++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666665554
No 463
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=31.04 E-value=51 Score=21.88 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCH
Q 010236 91 GDIDEAMALLAQMQALG-FHPSS 112 (514)
Q Consensus 91 g~~~~A~~~~~~m~~~~-~~~~~ 112 (514)
=+++.|+..|.++...| ++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 48999999999998865 45443
No 464
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.89 E-value=2.8e+02 Score=22.18 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc
Q 010236 442 KYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (514)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (514)
..-.|.++++.+.+.+...+..|.---+..+...|-.
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445555555555555444444444444455554443
No 465
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.46 E-value=1.6e+02 Score=19.38 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-----hcCChHHHHHHH
Q 010236 86 YCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALA-----SVGRTLEADAIF 135 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~ 135 (514)
.+...|++=+|-++++.+=...-.+....+..+|+..+ +.|+...|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 34568999999999999865432345556667766543 567777776653
No 466
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.44 E-value=1.5e+02 Score=22.56 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSAL 507 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~ 507 (514)
++..+...+..-.|.++++.+.+.|...+..|.-.-++.+
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 3344444444555555555555544444444333333333
No 467
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.15 E-value=2.4e+02 Score=21.23 Aligned_cols=78 Identities=18% Similarity=0.058 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
..++|..+.+.+...+. .....-..-+..+.+.|++++|+ ..-. ....||...|-+|-. .+.|--+.+...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LLPQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hhcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45566666666655432 12222222234455666666661 1111 112455555544332 35565556665555
Q ss_pred HHHHc
Q 010236 172 VMEDM 176 (514)
Q Consensus 172 ~~~~~ 176 (514)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55443
No 468
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.92 E-value=5.3e+02 Score=26.56 Aligned_cols=84 Identities=10% Similarity=0.165 Sum_probs=44.9
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 010236 404 QQGLCEQTVKVLQLMEPEGIEPNL------VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK 477 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 477 (514)
+..++..+.+.|..-... +..|. .....|-.+|....+.|.|.++++++.+.... ++.+-..+..+....|.
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcc
Confidence 344566666665543322 11111 12445556666667777777777777664322 33344444555566666
Q ss_pred cchHHHHHHHHH
Q 010236 478 FHKVPEIYKQME 489 (514)
Q Consensus 478 ~~~a~~~~~~m~ 489 (514)
-++|+.+.....
T Consensus 444 Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 444 SEEALTCLQKIK 455 (872)
T ss_pred hHHHHHHHHHHH
Confidence 666666655544
No 469
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.38 E-value=1.2e+02 Score=20.90 Aligned_cols=35 Identities=37% Similarity=0.481 Sum_probs=19.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 010236 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALA 123 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 123 (514)
-.|+.+.+.+++++..+.|..|.......+..+..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34666666666666666665555544444444443
No 470
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=29.09 E-value=6e+02 Score=25.50 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHH
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEA--LASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRGFL 158 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~ 158 (514)
.++++.+.|+.+.|..++.++.. ...+.....-.++.+ .....++..|.+.+.+.....++++ ...|...+.+..
T Consensus 69 Aa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~e 147 (604)
T COG3107 69 AARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALE 147 (604)
T ss_pred HHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHh
Confidence 35677888999999999988875 445555555555543 3456778888888888766555554 455666666666
Q ss_pred hcCChhhHH
Q 010236 159 KKGLLGLGS 167 (514)
Q Consensus 159 ~~g~~~~A~ 167 (514)
..|+.=++.
T Consensus 148 a~~~~~~a~ 156 (604)
T COG3107 148 ARGDSIDAA 156 (604)
T ss_pred cccchHHHH
Confidence 665543333
No 471
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=5.8e+02 Score=26.32 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=52.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS------ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 151 (514)
..||+.-+. .+..+|..+++.|..-... ++.|. .....+--.|....+.+.|.+++++..+.. +.++.+--
T Consensus 356 iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~ 432 (872)
T KOG4814|consen 356 LLWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQL 432 (872)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHH
Confidence 345544333 3556777777777654332 12221 123445555666777777777777777643 23344444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
.+..+.+..|.-++|+.+......
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh
Confidence 455556666777777766665543
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.70 E-value=5e+02 Score=24.41 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLI 434 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 434 (514)
-|-.++......|.++.++.+|+++...|-.|-...-..++
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 34444444445555555555555555555444433333333
No 473
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.70 E-value=2.6e+02 Score=21.09 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=20.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
..+...|+|++| +.. -... -.||...|-.| +-.+.|--+++...+.++..
T Consensus 48 ~sLmNrG~Yq~A--Ll~-~~~~-~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 48 SSLMNRGDYQEA--LLL-PQCH-CYPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHTT-HHHH--HHH-HTTS---GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHhhHHHHHH--HHh-cccC-CCccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 344555566555 111 1111 24555554333 23345555555555555443
No 474
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.30 E-value=5.5e+02 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=11.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHH
Q 010236 255 YNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
+.-+.+.|..+|+++.|++.|.+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhh
Confidence 33444445555555555555554
No 475
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.75 E-value=2.7e+02 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPEG 422 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~ 422 (514)
++.+.++...++|+++++-|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555555554
No 476
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=27.53 E-value=5.5e+02 Score=24.57 Aligned_cols=109 Identities=15% Similarity=0.207 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC--CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcCH-----HHH
Q 010236 397 ILANAYAQQGLCEQTVKVLQLMEPE--GIE---PNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPDL-----VTY 465 (514)
Q Consensus 397 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~-----~~~ 465 (514)
.|...+-.+|+.++|..++.+..-. |.- --+...-.=++.|...+++-.|--+-+++...-+ .||. ..|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 3455566777887777777654321 100 0001111223456666777777666555532212 2332 246
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 010236 466 STLMKAFIRAKKFHKVPEIYKQMESSG-CTPDRKARQILQS 505 (514)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~ 505 (514)
+.++....+.+.+=++.+.|+...+.| ++-|+.-|.-.+.
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 677777777777777777777776543 3445544544443
No 477
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=27.40 E-value=3.2e+02 Score=21.71 Aligned_cols=22 Identities=5% Similarity=-0.007 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~ 420 (514)
.-++.+.++++.+.++.+.+.+
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh
Confidence 3344555555555555555544
No 478
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.27 E-value=9e+02 Score=27.35 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C
Q 010236 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQ-------QESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ-----G 317 (514)
Q Consensus 250 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~-------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 317 (514)
.....|..+...+.+.++.++|+..-.+.. .....-+...|..+.......++...|+..+...... |
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 345566677777777788877776654421 1111223344555555555555666666666655432 1
Q ss_pred -CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 318 -FYPD-PKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 318 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
..|. ..++..+-..+...++.+.|.+..+.+.+
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1222 22333333333444666666666666554
No 479
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.89 E-value=4.8e+02 Score=23.61 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=11.0
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 010236 89 KLGDIDEAMALLAQMQAL 106 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~ 106 (514)
..+++..|...+......
T Consensus 53 ~~~~~~~a~~~~~~a~~~ 70 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL 70 (292)
T ss_pred ccccHHHHHHHHHHhhhc
Confidence 446666666666666653
No 480
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.84 E-value=5e+02 Score=23.87 Aligned_cols=80 Identities=10% Similarity=-0.028 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010236 234 KKAVGIVEEIREMGL----SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 234 ~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
+.|.+.|+.....+. ..+...-..++....+.|..+.-..+++..... ++......++.+.+...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 444445555444211 223333444444445555544444444433332 2444455555555555555555555
Q ss_pred HHHHHHC
Q 010236 310 FTQMQEQ 316 (514)
Q Consensus 310 ~~~m~~~ 316 (514)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 5555553
No 481
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.78 E-value=1.3e+02 Score=16.87 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYA 116 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~ 116 (514)
.++.|..+|++.... .|++.+|.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 345566666665543 35555444
No 482
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=4.6e+02 Score=23.25 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH-hHHHHHHHHHhcCCHHHHHH
Q 010236 126 GRTLEADAIFQEMVCFGFNPKL-RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWL 203 (514)
Q Consensus 126 g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 203 (514)
.+++.|+..|.+.+.. .|++ .-|+.-+-++.+..+++.+..--.+..+ +.||.+ ..-.+..+......+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3344444444444432 2333 2333444444444444444433333333 223322 12222333344445555555
Q ss_pred HHHHH
Q 010236 204 IINEM 208 (514)
Q Consensus 204 ~~~~m 208 (514)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 54444
No 483
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=25.85 E-value=3.8e+02 Score=29.40 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=33.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 010236 404 QQGLCEQTVKVLQLMEPEGIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLV 463 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 463 (514)
....+.+++.+|..|...|+.... ..|......+.+.+.+.+|..+|+.-.+....|-..
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 444556666666666666555443 344455555556666666666666655544444443
No 484
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.82 E-value=3.9e+02 Score=22.24 Aligned_cols=117 Identities=9% Similarity=0.056 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~ 156 (514)
.+..++..--+..++..++.++++.. -.+..-.-+.-+.+.|+++.+..-|.+....--.. ...++..+..-
T Consensus 59 ~~~pll~~~~k~~~l~~~l~~l~r~~------flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~e 132 (182)
T PF15469_consen 59 VFKPLLERREKADKLRNALEFLQRNR------FLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSE 132 (182)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVY 220 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 220 (514)
+-+.- -+-...+++++.+ |+ ...++..+++..+.+.+...|+.-+
T Consensus 133 ve~ii-~~~r~~l~~~L~~----~~--------------~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 133 VEKII-EEFREKLWEKLLS----PP--------------SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred HHHHH-HHHHHHHHHHHhC----CC--------------CCHHHHHHHHHHHHhCCCCCCHHHH
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.81 E-value=1.9e+02 Score=21.79 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 010236 294 IRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGK 337 (514)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 337 (514)
+..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444455566666666665555555555555555555543
No 486
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=25.40 E-value=9.5e+02 Score=26.55 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQM 103 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m 103 (514)
..|+.+...++|.+|..+.++-
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~Rkh 720 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKH 720 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHh
Confidence 4666778889999998877753
No 487
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.69 E-value=5.5e+02 Score=23.60 Aligned_cols=82 Identities=13% Similarity=0.070 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010236 268 LVEALEVFEKMQQESI----RPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 268 ~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 5677788888776422 23444445566666677775554455554443 2356667788888888888888888
Q ss_pred HHHHHHhcC
Q 010236 344 NFENMKDRG 352 (514)
Q Consensus 344 ~~~~~~~~~ 352 (514)
+++.+...+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 888887753
No 488
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=24.42 E-value=6.6e+02 Score=24.37 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--C----
Q 010236 81 NKSIQYCCKLGDIDEAMALLAQMQA-------LGFHP-----SSISYASLIEALASVGRTLEADAIFQEMVCF--G---- 142 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g---- 142 (514)
-.++..+....++.+-++..+.... .|..| .-++...+++.++-.|++..|+++++.+.-. +
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 3455566666666666655554211 11111 1234566777788888888888887765321 1
Q ss_pred -CCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010236 143 -FNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 143 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
....+.++-.+.-+|.-.+++.+|.++|..+.
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234455556666777777777777776654
No 489
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=24.36 E-value=1e+03 Score=26.91 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=12.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHH
Q 010236 182 QETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
...|..+...+-+.++.++|+..
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHh
Confidence 34455555555566666555543
No 490
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.89 E-value=4.9e+02 Score=22.73 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 010236 398 LANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~ 418 (514)
++.++...|+.+.|+.+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444455555555555544
No 491
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=23.86 E-value=5.4e+02 Score=23.20 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 010236 432 VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQIL 503 (514)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 503 (514)
.+=..+.++++++.|....++....+.. |+.-+.--..+|.+.|....|.+-++...+ ..|+..+-..+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~-dp~eirDrGliY~ql~c~~vAl~dl~~~~~--~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPE-DPYEIRDRGLIYAQLGCYHVALEDLSYFVE--HCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCC-ChhhccCcHHHHHhcCCchhhHHHHHHHHH--hCCCchHHHHH
Confidence 4445677888888888888888776443 665666666778888888888888887665 34444333333
No 492
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=22.72 E-value=6.7e+02 Score=23.86 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=36.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFG-KYGELVEALEVFEKMQQ 280 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~ 280 (514)
+..+.+.|.+..|.++.+-+...+..-|....-.+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456677777777777777777665446666666666664 45566666666665443
No 493
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=22.46 E-value=4.9e+02 Score=22.15 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=8.4
Q ss_pred HhcCChhhHHHHHHHHH
Q 010236 158 LKKGLLGLGSRLLMVME 174 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~ 174 (514)
...|++++|.+-++++.
T Consensus 40 ~H~~~~eeA~~~l~~a~ 56 (204)
T COG2178 40 LHRGDFEEAEKKLKKAS 56 (204)
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555555554443
No 494
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.08 E-value=8.2e+02 Score=24.65 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----------------CCcCHHHHHHHHHHH
Q 010236 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG----------------ISPDLVTYSTLMKAF 472 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------------~~p~~~~~~~l~~~~ 472 (514)
+-...+-..+...|+..+......++. ...|+...|...++++...+ -.++......|+.+.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai 268 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYI 268 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_pred HcCCCcchHHHHHHHHHhCCCCCCHHHHHHH
Q 010236 473 IRAKKFHKVPEIYKQMESSGCTPDRKARQIL 503 (514)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 503 (514)
.+ |+.++|..+++++...|..|....-.+.
T Consensus 269 ~~-~d~~~Al~~l~~L~~~g~~~~~~l~~l~ 298 (507)
T PRK06645 269 IH-RETEKAINLINKLYGSSVNLEIFIESVS 298 (507)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 495
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=22.05 E-value=30 Score=22.13 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=13.0
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010236 479 HKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 479 ~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
++.+++|++|..+.+.|....|+..++
T Consensus 9 ~~lI~vFK~~pSr~YD~~Tr~W~F~L~ 35 (55)
T PF07443_consen 9 EELIAVFKQMPSRNYDPKTRKWNFSLE 35 (55)
T ss_pred HHHHHHHHcCcccccCccceeeeeeHH
Confidence 344455555555545555444444443
No 496
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.97 E-value=3.1e+02 Score=19.67 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010236 308 ELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 308 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
++|+-....|+..|+..|..+++.+.-.=..+...++++.+.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556666666666666666666665544444555555555443
No 497
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.85 E-value=2.8e+02 Score=19.10 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 010236 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASV 125 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 125 (514)
.=+.+.|..++..+.... +.++..||++...+.+.
T Consensus 10 mlDtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 10 MLDTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 345566777777666543 55677788877776654
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.74 E-value=3e+02 Score=20.91 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 010236 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG 406 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 406 (514)
.+++.+...+..-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344555555556667777777776665555544333334444333
No 499
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=21.55 E-value=7.3e+02 Score=23.83 Aligned_cols=90 Identities=11% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCC-CCCH
Q 010236 361 AILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL------------ANAYAQQGLCEQTVKVLQLMEPEGI-EPNL 427 (514)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~-~p~~ 427 (514)
..|...+-..|++++|.+++.++.- .||.++ ++.|...+++-.|.-+-+++...-+ .|+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V-------ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV-------ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch-------hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 4566667778888888888776532 233332 3456667788777776666654422 3343
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 428 -----VMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 428 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
..|+.++......+.+=++.+.++..-..|
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 357888888888888888888888876543
No 500
>PRK09857 putative transposase; Provisional
Probab=21.34 E-value=6.4e+02 Score=23.12 Aligned_cols=15 Identities=40% Similarity=0.419 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHCCCC
Q 010236 305 KALELFTQMQEQGFY 319 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~ 319 (514)
+++++..+|...|+.
T Consensus 258 ~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 258 KALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHcCCC
Confidence 344444444444443
Done!