Query 010236
Match_columns 514
No_of_seqs 800 out of 2467
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 22:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.8E-39 2.3E-43 325.7 39.4 427 73-512 80-565 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-37 8.8E-42 314.1 39.4 421 73-506 113-593 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-28 8.2E-33 234.2 49.8 383 83-476 5-387 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.6E-31 5.4E-36 260.6 25.2 213 96-334 9-222 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.6E-31 5.3E-36 260.7 24.6 188 78-265 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-27 3.7E-32 229.6 48.1 382 118-511 5-387 (388)
7 2gw1_A Mitochondrial precursor 100.0 9.9E-25 3.4E-29 217.1 38.4 410 77-498 6-483 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 8.9E-23 3E-27 199.5 40.3 314 76-420 25-357 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.4E-27 196.7 42.1 361 95-488 10-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-22 4.7E-27 202.9 39.2 402 76-491 24-491 (537)
11 2gw1_A Mitochondrial precursor 99.9 4.3E-22 1.5E-26 198.0 34.8 375 75-457 37-479 (514)
12 3fp2_A TPR repeat-containing p 99.9 4.6E-20 1.6E-24 184.5 36.1 385 112-512 25-477 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.1E-19 2.4E-23 166.0 41.6 333 147-511 3-354 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 5.2E-19 1.8E-23 166.9 39.2 332 111-473 2-351 (359)
15 2xm6_A Protein corresponding t 99.9 1.7E-17 5.7E-22 163.7 49.9 354 76-459 38-435 (490)
16 2xm6_A Protein corresponding t 99.9 5.5E-17 1.9E-21 160.0 50.9 365 96-493 26-434 (490)
17 2ooe_A Cleavage stimulation fa 99.9 1.5E-17 5.3E-22 165.7 43.4 408 76-490 12-491 (530)
18 3hym_B Cell division cycle pro 99.9 2E-18 6.9E-23 160.9 34.1 292 74-372 19-320 (330)
19 3hym_B Cell division cycle pro 99.9 1.6E-18 5.4E-23 161.6 33.1 291 181-478 21-321 (330)
20 1fch_A Peroxisomal targeting s 99.8 1.7E-18 5.7E-23 164.3 25.3 289 196-489 39-357 (368)
21 2ooe_A Cleavage stimulation fa 99.8 2.5E-16 8.4E-21 157.0 41.9 399 100-507 2-473 (530)
22 1fch_A Peroxisomal targeting s 99.8 4.2E-18 1.4E-22 161.5 26.8 289 88-381 36-354 (368)
23 4eqf_A PEX5-related protein; a 99.8 5.5E-18 1.9E-22 160.6 26.7 267 75-346 63-351 (365)
24 3cv0_A Peroxisome targeting si 99.8 3E-17 1E-21 152.7 27.9 266 75-346 19-310 (327)
25 1b89_A Protein (clathrin heavy 99.8 2.3E-18 7.8E-23 160.2 18.4 239 89-369 15-253 (449)
26 4eqf_A PEX5-related protein; a 99.8 8.2E-18 2.8E-22 159.4 21.6 232 150-385 68-309 (365)
27 3spa_A Mtrpol, DNA-directed RN 99.8 3.6E-19 1.2E-23 178.5 12.1 151 76-231 126-286 (1134)
28 3cv0_A Peroxisome targeting si 99.8 1.9E-16 6.4E-21 147.3 27.6 280 111-418 20-312 (327)
29 1b89_A Protein (clathrin heavy 99.8 2.3E-17 7.9E-22 153.5 21.0 268 76-380 31-305 (449)
30 4g1t_A Interferon-induced prot 99.8 6.1E-16 2.1E-20 151.9 32.6 391 76-499 50-468 (472)
31 4g1t_A Interferon-induced prot 99.8 1.4E-15 4.6E-20 149.4 34.5 370 110-512 49-445 (472)
32 3mkr_A Coatomer subunit epsilo 99.8 3.1E-16 1.1E-20 142.8 26.8 249 192-455 9-263 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-18 4.2E-23 174.8 11.5 161 112-277 127-306 (1134)
34 3mkr_A Coatomer subunit epsilo 99.8 3.6E-16 1.2E-20 142.3 25.9 251 157-421 9-264 (291)
35 1xi4_A Clathrin heavy chain; a 99.7 7.9E-14 2.7E-18 144.8 42.2 319 114-489 987-1307(1630)
36 1xi4_A Clathrin heavy chain; a 99.7 2E-13 6.7E-18 141.8 43.1 336 81-474 989-1326(1630)
37 3e4b_A ALGK; tetratricopeptide 99.7 6.6E-15 2.3E-19 143.0 25.3 379 82-490 8-420 (452)
38 2pl2_A Hypothetical conserved 99.7 7.9E-15 2.7E-19 127.5 22.7 198 76-279 4-212 (217)
39 3uq3_A Heat shock protein STI1 99.7 1.3E-14 4.4E-19 129.8 23.8 225 217-490 5-235 (258)
40 3uq3_A Heat shock protein STI1 99.7 2.3E-14 7.9E-19 128.1 25.3 224 78-315 6-235 (258)
41 2pl2_A Hypothetical conserved 99.7 1.7E-14 5.8E-19 125.4 21.7 199 109-313 2-211 (217)
42 1ouv_A Conserved hypothetical 99.6 6.1E-13 2.1E-17 120.2 31.7 222 77-316 6-251 (273)
43 1ouv_A Conserved hypothetical 99.6 1.4E-12 5E-17 117.7 33.5 224 251-492 5-252 (273)
44 3e4b_A ALGK; tetratricopeptide 99.6 5.1E-14 1.7E-18 136.7 24.7 344 117-493 8-389 (452)
45 2h6f_A Protein farnesyltransfe 99.6 1.8E-13 6.1E-18 128.8 27.2 232 77-315 97-347 (382)
46 2ho1_A Type 4 fimbrial biogene 99.6 2.2E-13 7.5E-18 121.4 25.7 201 77-281 37-238 (252)
47 2vq2_A PILW, putative fimbrial 99.6 3.3E-13 1.1E-17 117.8 25.8 200 77-279 8-209 (225)
48 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.3E-18 124.5 23.7 234 79-316 5-250 (272)
49 2q7f_A YRRB protein; TPR, prot 99.6 6.5E-14 2.2E-18 124.0 20.9 204 73-281 19-222 (243)
50 2ho1_A Type 4 fimbrial biogene 99.6 5.4E-13 1.8E-17 118.9 26.6 201 112-316 37-238 (252)
51 2vq2_A PILW, putative fimbrial 99.6 6.6E-13 2.3E-17 115.8 26.5 202 111-315 7-210 (225)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.4E-14 1.2E-18 128.4 18.7 247 89-345 17-269 (275)
53 4e6h_A MRNA 3'-END-processing 99.6 2.2E-11 7.6E-16 122.3 40.5 423 75-504 64-581 (679)
54 2h6f_A Protein farnesyltransfe 99.6 4.3E-13 1.5E-17 126.2 25.9 248 112-367 97-363 (382)
55 3u4t_A TPR repeat-containing p 99.6 9.6E-13 3.3E-17 118.7 27.1 192 189-384 10-206 (272)
56 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-13 9.1E-18 120.1 20.3 197 289-490 25-221 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-13 5.3E-18 124.1 19.1 118 196-315 19-139 (275)
58 3sf4_A G-protein-signaling mod 99.6 2.2E-13 7.6E-18 130.6 19.9 276 74-350 6-335 (406)
59 3sf4_A G-protein-signaling mod 99.5 4E-13 1.4E-17 128.8 19.4 302 147-479 9-364 (406)
60 4a1s_A PINS, partner of inscut 99.5 6E-13 2.1E-17 127.9 20.1 238 76-314 47-330 (411)
61 2ond_A Cleavage stimulation fa 99.5 2.5E-11 8.4E-16 111.6 29.4 235 78-316 9-270 (308)
62 4a1s_A PINS, partner of inscut 99.5 9.9E-13 3.4E-17 126.4 20.9 201 113-314 49-290 (411)
63 4e6h_A MRNA 3'-END-processing 99.5 3.4E-10 1.1E-14 113.7 38.0 412 92-511 47-551 (679)
64 3ro2_A PINS homolog, G-protein 99.5 1.2E-12 4.2E-17 121.7 19.2 199 79-278 7-249 (338)
65 3ro2_A PINS homolog, G-protein 99.5 1.6E-12 5.6E-17 120.8 19.0 276 114-421 7-332 (338)
66 3ulq_A Response regulator aspa 99.5 1E-11 3.5E-16 118.1 24.6 226 87-314 22-291 (383)
67 3vtx_A MAMA; tetratricopeptide 99.5 9.4E-12 3.2E-16 104.9 21.7 167 76-246 4-170 (184)
68 3ulq_A Response regulator aspa 99.5 9.2E-12 3.1E-16 118.4 22.8 228 225-454 111-366 (383)
69 3vtx_A MAMA; tetratricopeptide 99.5 1.8E-11 6.2E-16 103.1 22.1 167 111-281 4-170 (184)
70 4abn_A Tetratricopeptide repea 99.4 1.3E-11 4.3E-16 120.6 23.2 214 233-452 84-317 (474)
71 4abn_A Tetratricopeptide repea 99.4 5.1E-12 1.7E-16 123.4 20.4 215 128-348 84-318 (474)
72 2ond_A Cleavage stimulation fa 99.4 9.9E-11 3.4E-15 107.5 27.9 235 217-456 8-270 (308)
73 3q15_A PSP28, response regulat 99.4 1.1E-10 3.7E-15 110.7 25.7 241 74-315 7-289 (378)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.6E-11 5.3E-16 112.9 18.8 239 76-315 26-306 (311)
75 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-11 7.2E-16 112.0 18.9 240 111-351 26-307 (311)
76 1hz4_A MALT regulatory protein 99.4 5.3E-10 1.8E-14 105.8 27.0 299 185-491 17-349 (373)
77 3q15_A PSP28, response regulat 99.4 1.7E-10 5.7E-15 109.5 23.5 228 259-490 108-364 (378)
78 1hz4_A MALT regulatory protein 99.3 9.2E-10 3.2E-14 104.1 28.4 268 82-349 19-320 (373)
79 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.7E-15 97.5 19.7 164 78-245 9-172 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.3 1E-10 3.5E-15 118.9 20.8 165 77-245 9-173 (723)
81 3as5_A MAMA; tetratricopeptide 99.3 3.4E-10 1.2E-14 95.0 19.8 161 114-278 10-170 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.3 2.1E-10 7.3E-15 116.6 20.4 167 110-280 7-173 (723)
83 4i17_A Hypothetical protein; T 99.3 1.7E-09 5.9E-14 94.4 23.1 198 287-498 7-214 (228)
84 4i17_A Hypothetical protein; T 99.2 2.1E-09 7.2E-14 93.8 21.7 194 76-281 6-209 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 1.8E-10 6.3E-15 104.0 15.1 227 89-316 13-281 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 2.9E-10 9.8E-15 102.7 15.1 228 123-351 12-281 (283)
87 2uy1_A Cleavage stimulation fa 99.2 2.9E-08 1E-12 96.8 29.0 369 79-490 17-412 (493)
88 2fo7_A Synthetic consensus TPR 99.2 3.4E-09 1.2E-13 83.5 17.8 130 79-211 3-132 (136)
89 3mv2_B Coatomer subunit epsilo 99.1 3.1E-08 1.1E-12 88.4 25.3 79 271-350 85-164 (310)
90 1qqe_A Vesicular transport pro 99.1 2.7E-09 9.1E-14 97.1 18.2 89 121-209 46-145 (292)
91 1qqe_A Vesicular transport pro 99.1 5.4E-09 1.9E-13 95.0 19.4 200 78-279 38-267 (292)
92 3mv2_B Coatomer subunit epsilo 99.1 4E-08 1.4E-12 87.7 23.9 179 201-386 85-282 (310)
93 2uy1_A Cleavage stimulation fa 99.1 8.8E-07 3E-11 86.3 34.2 340 73-455 43-412 (493)
94 2fo7_A Synthetic consensus TPR 99.1 1.8E-08 6.3E-13 79.2 17.9 129 114-245 3-131 (136)
95 3urz_A Uncharacterized protein 99.0 9.7E-09 3.3E-13 88.1 17.0 109 82-193 9-133 (208)
96 3dra_A Protein farnesyltransfe 99.0 3.5E-07 1.2E-11 82.5 26.9 223 88-315 43-286 (306)
97 3qky_A Outer membrane assembly 99.0 1.7E-08 5.9E-13 90.0 18.3 186 76-281 14-224 (261)
98 3urz_A Uncharacterized protein 99.0 1.9E-08 6.6E-13 86.2 17.8 192 287-505 4-198 (208)
99 2pzi_A Probable serine/threoni 99.0 4.7E-09 1.6E-13 107.2 15.9 172 123-301 402-582 (681)
100 3qky_A Outer membrane assembly 99.0 2.3E-08 7.7E-13 89.3 17.9 186 285-490 13-223 (261)
101 3dra_A Protein farnesyltransfe 99.0 1.3E-06 4.5E-11 78.8 27.9 219 127-350 48-286 (306)
102 2r5s_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 84.9 13.6 163 79-245 8-172 (176)
103 2pzi_A Probable serine/threoni 98.9 1.6E-08 5.5E-13 103.2 16.8 173 158-337 402-583 (681)
104 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.9E-12 81.0 20.0 29 287-315 18-46 (212)
105 3rjv_A Putative SEL1 repeat pr 98.9 3.3E-07 1.1E-11 78.7 21.8 127 182-315 18-157 (212)
106 4ga2_A E3 SUMO-protein ligase 98.9 5.9E-09 2E-13 84.2 10.1 143 85-231 5-148 (150)
107 2vsy_A XCC0866; transferase, g 98.9 3.8E-08 1.3E-12 98.6 17.7 154 90-247 2-158 (568)
108 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.5E-13 83.7 13.0 156 330-489 14-171 (176)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 4.4E-08 1.5E-12 89.7 16.3 198 195-419 4-222 (307)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.7E-07 5.8E-12 81.4 19.0 182 78-282 5-214 (225)
111 3qou_A Protein YBBN; thioredox 98.9 4.5E-08 1.6E-12 88.6 15.8 162 111-276 116-279 (287)
112 3qou_A Protein YBBN; thioredox 98.9 5.1E-08 1.7E-12 88.2 15.8 163 323-489 118-282 (287)
113 4ga2_A E3 SUMO-protein ligase 98.8 1.6E-08 5.6E-13 81.5 10.4 140 122-265 7-147 (150)
114 2yhc_A BAMD, UPF0169 lipoprote 98.8 3.2E-07 1.1E-11 79.6 19.4 187 286-491 3-213 (225)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-07 4.6E-12 86.4 17.7 225 90-343 4-253 (307)
116 2vsy_A XCC0866; transferase, g 98.8 1.4E-07 4.7E-12 94.5 18.2 154 125-282 2-158 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.7E-07 1.6E-11 77.7 18.4 130 79-213 8-152 (213)
118 3q7a_A Farnesyltransferase alp 98.8 5.8E-06 2E-10 75.4 25.4 182 80-266 57-256 (349)
119 3u3w_A Transcriptional activat 98.7 2.8E-06 9.7E-11 77.0 22.9 161 154-314 82-264 (293)
120 3u3w_A Transcriptional activat 98.7 2.4E-06 8.3E-11 77.4 22.1 162 329-490 82-265 (293)
121 4gco_A Protein STI-1; structur 98.7 4.3E-07 1.5E-11 70.5 14.6 98 78-177 14-111 (126)
122 1a17_A Serine/threonine protei 98.7 5.5E-07 1.9E-11 73.7 15.9 130 77-209 13-144 (166)
123 1na0_A Designed protein CTPR3; 98.7 6.4E-07 2.2E-11 69.0 14.9 113 77-192 9-121 (125)
124 2e2e_A Formate-dependent nitri 98.7 1.6E-07 5.6E-12 78.0 12.0 119 369-490 22-143 (177)
125 2lni_A Stress-induced-phosphop 98.7 7.3E-07 2.5E-11 69.7 15.1 121 73-196 12-132 (133)
126 3q7a_A Farnesyltransferase alp 98.7 2.1E-05 7E-10 71.7 26.3 188 92-302 52-257 (349)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.1E-07 2.8E-11 76.2 16.5 129 324-458 8-152 (213)
128 2qfc_A PLCR protein; TPR, HTH, 98.7 6.8E-06 2.3E-10 74.4 22.8 164 289-453 77-263 (293)
129 3gyz_A Chaperone protein IPGC; 98.7 5.7E-07 1.9E-11 72.1 13.6 101 394-498 38-138 (151)
130 2c2l_A CHIP, carboxy terminus 98.6 3.1E-07 1.1E-11 82.7 13.1 96 78-175 5-100 (281)
131 2e2e_A Formate-dependent nitri 98.6 5.4E-07 1.9E-11 74.8 13.2 122 88-212 21-145 (177)
132 3gw4_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 76.2 13.8 156 88-244 3-174 (203)
133 4gco_A Protein STI-1; structur 98.6 1.5E-06 5.2E-11 67.4 14.8 97 113-211 14-110 (126)
134 2vyi_A SGTA protein; chaperone 98.6 1.1E-06 3.6E-11 68.4 14.1 119 76-197 11-129 (131)
135 1a17_A Serine/threonine protei 98.6 2E-06 6.8E-11 70.2 16.3 128 113-243 14-143 (166)
136 2qfc_A PLCR protein; TPR, HTH, 98.6 5.9E-06 2E-10 74.8 20.3 167 324-490 77-265 (293)
137 3gyz_A Chaperone protein IPGC; 98.6 6.6E-07 2.2E-11 71.8 12.3 99 77-177 36-134 (151)
138 1na0_A Designed protein CTPR3; 98.6 2.4E-06 8.1E-11 65.7 15.1 98 112-211 9-106 (125)
139 3dss_A Geranylgeranyl transfer 98.6 4.2E-05 1.4E-09 69.4 25.0 137 88-228 40-190 (331)
140 2c2l_A CHIP, carboxy terminus 98.6 1E-06 3.5E-11 79.3 14.1 99 111-211 3-101 (281)
141 4f3v_A ESX-1 secretion system 98.6 1E-06 3.6E-11 77.5 13.4 187 89-281 18-237 (282)
142 2vyi_A SGTA protein; chaperone 98.5 3.4E-06 1.1E-10 65.5 15.2 119 357-478 12-130 (131)
143 2vgx_A Chaperone SYCD; alterna 98.5 4.5E-07 1.5E-11 72.8 9.8 97 357-455 21-117 (148)
144 4f3v_A ESX-1 secretion system 98.5 5.1E-06 1.7E-10 73.2 17.0 132 360-496 105-240 (282)
145 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.3E-11 74.2 13.0 86 123-209 3-93 (203)
146 1p5q_A FKBP52, FK506-binding p 98.5 1.8E-06 6.2E-11 79.9 14.8 131 112-244 147-292 (336)
147 2vgx_A Chaperone SYCD; alterna 98.5 7.8E-07 2.7E-11 71.3 10.8 94 115-210 24-117 (148)
148 2lni_A Stress-induced-phosphop 98.5 3E-06 1E-10 66.1 14.0 99 111-211 15-113 (133)
149 1p5q_A FKBP52, FK506-binding p 98.5 2E-06 6.8E-11 79.6 14.9 123 322-446 147-283 (336)
150 3upv_A Heat shock protein STI1 98.5 3.9E-06 1.3E-10 65.0 13.8 97 78-176 5-101 (126)
151 4gcn_A Protein STI-1; structur 98.5 2.5E-06 8.6E-11 66.3 12.5 106 394-502 10-121 (127)
152 1elw_A TPR1-domain of HOP; HOP 98.5 6.6E-06 2.3E-10 62.4 14.8 98 78-177 5-102 (118)
153 3upv_A Heat shock protein STI1 98.5 5E-06 1.7E-10 64.4 14.2 95 394-490 6-100 (126)
154 3dss_A Geranylgeranyl transfer 98.5 0.00027 9.1E-09 64.1 26.9 188 123-315 40-266 (331)
155 1elr_A TPR2A-domain of HOP; HO 98.4 4.2E-06 1.4E-10 64.9 13.0 114 394-510 6-125 (131)
156 2xcb_A PCRH, regulatory protei 98.4 4.2E-06 1.4E-10 66.5 12.4 98 77-176 18-115 (142)
157 2kck_A TPR repeat; tetratricop 98.4 4E-06 1.4E-10 63.0 11.7 99 77-177 6-107 (112)
158 2xcb_A PCRH, regulatory protei 98.4 2.4E-06 8.1E-11 67.9 10.5 95 359-455 20-114 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.4 1.2E-05 4E-10 61.0 14.1 95 394-490 6-100 (118)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 1.2E-05 4.2E-10 65.5 14.8 99 356-456 10-108 (164)
161 4gcn_A Protein STI-1; structur 98.3 1.2E-05 4.1E-10 62.3 13.5 62 78-140 9-70 (127)
162 3q49_B STIP1 homology and U bo 98.3 8.2E-06 2.8E-10 64.1 12.8 97 392-490 9-105 (137)
163 2fbn_A 70 kDa peptidylprolyl i 98.3 7.5E-06 2.6E-10 69.2 13.3 123 77-202 38-176 (198)
164 3sz7_A HSC70 cochaperone (SGT) 98.3 1.2E-05 4E-10 65.6 14.0 101 75-177 9-109 (164)
165 2kck_A TPR repeat; tetratricop 98.3 7.8E-06 2.7E-10 61.4 11.9 99 111-211 5-106 (112)
166 2fbn_A 70 kDa peptidylprolyl i 98.3 1E-05 3.4E-10 68.4 13.5 97 393-491 89-186 (198)
167 2dba_A Smooth muscle cell asso 98.3 2.3E-05 7.9E-10 62.3 14.9 100 75-177 26-129 (148)
168 3q49_B STIP1 homology and U bo 98.3 1.5E-05 5E-10 62.6 13.5 98 76-175 8-105 (137)
169 1hxi_A PEX5, peroxisome target 98.3 7E-06 2.4E-10 63.1 11.0 96 79-176 19-114 (121)
170 1elr_A TPR2A-domain of HOP; HO 98.3 6.2E-06 2.1E-10 64.0 11.0 98 78-176 5-108 (131)
171 4b4t_Q 26S proteasome regulato 98.3 4.1E-05 1.4E-09 73.5 18.8 196 84-279 11-243 (434)
172 1hxi_A PEX5, peroxisome target 98.3 5.6E-06 1.9E-10 63.6 10.1 93 396-490 21-113 (121)
173 2dba_A Smooth muscle cell asso 98.2 4.6E-05 1.6E-09 60.5 15.3 96 357-455 28-127 (148)
174 2xev_A YBGF; tetratricopeptide 98.2 2.5E-05 8.6E-10 60.5 13.2 90 399-490 9-104 (129)
175 4b4t_Q 26S proteasome regulato 98.2 0.0001 3.6E-09 70.6 19.3 160 224-383 11-201 (434)
176 2xev_A YBGF; tetratricopeptide 98.2 9.3E-05 3.2E-09 57.2 15.2 95 81-177 6-106 (129)
177 3k9i_A BH0479 protein; putativ 98.1 3.8E-06 1.3E-10 64.1 6.1 87 369-456 2-90 (117)
178 3rkv_A Putative peptidylprolyl 98.1 3E-05 1E-09 63.0 11.8 61 429-490 65-125 (162)
179 1wao_1 Serine/threonine protei 98.1 8.8E-06 3E-10 79.1 9.9 119 85-206 14-134 (477)
180 3ro3_A PINS homolog, G-protein 98.1 3.2E-05 1.1E-09 62.4 11.6 97 78-174 10-116 (164)
181 3ro3_A PINS homolog, G-protein 98.1 3.1E-05 1.1E-09 62.4 10.8 61 254-314 91-156 (164)
182 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5.9E-05 2E-09 72.9 14.2 122 78-202 269-405 (457)
183 1ihg_A Cyclophilin 40; ppiase 98.0 5E-05 1.7E-09 71.0 12.9 96 79-175 225-335 (370)
184 3k9i_A BH0479 protein; putativ 98.0 1.4E-05 4.7E-10 60.9 7.5 87 89-176 2-90 (117)
185 3rkv_A Putative peptidylprolyl 98.0 8E-05 2.8E-09 60.4 12.6 99 77-176 11-126 (162)
186 1wao_1 Serine/threonine protei 98.0 2.1E-05 7.1E-10 76.5 10.4 115 369-486 18-134 (477)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.4E-05 2.2E-09 72.7 13.3 124 322-447 268-405 (457)
188 1dce_A Protein (RAB geranylger 98.0 0.00055 1.9E-08 67.8 19.6 174 89-267 40-241 (567)
189 2hr2_A Hypothetical protein; a 98.0 0.0001 3.6E-09 58.4 11.5 60 79-140 13-85 (159)
190 2hr2_A Hypothetical protein; a 97.9 0.00029 1E-08 55.9 13.5 105 398-504 17-149 (159)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 4E-05 1.4E-09 70.8 10.0 148 322-490 179-327 (338)
192 2if4_A ATFKBP42; FKBP-like, al 97.9 3.2E-05 1.1E-09 71.5 8.7 147 79-246 181-328 (338)
193 1ihg_A Cyclophilin 40; ppiase 97.9 0.00014 4.9E-09 67.9 13.1 138 114-273 225-362 (370)
194 1dce_A Protein (RAB geranylger 97.8 0.0021 7E-08 63.7 21.2 173 303-480 45-244 (567)
195 1klx_A Cysteine rich protein B 97.8 0.00094 3.2E-08 52.3 14.8 87 225-317 33-127 (138)
196 2l6j_A TPR repeat-containing p 97.8 2.6E-05 8.7E-10 58.5 5.1 93 76-171 3-102 (111)
197 1klx_A Cysteine rich protein B 97.8 0.0007 2.4E-08 53.0 13.3 86 401-492 34-127 (138)
198 2l6j_A TPR repeat-containing p 97.7 7E-05 2.4E-09 56.0 6.5 94 392-487 4-103 (111)
199 3n71_A Histone lysine methyltr 97.7 0.00022 7.6E-09 68.9 11.1 88 87-174 319-420 (490)
200 2kat_A Uncharacterized protein 97.7 0.00042 1.4E-08 52.2 10.5 80 374-455 2-81 (115)
201 1na3_A Designed protein CTPR2; 97.6 0.00055 1.9E-08 48.7 10.5 81 77-159 9-89 (91)
202 2kat_A Uncharacterized protein 97.6 0.00027 9.3E-09 53.3 9.0 79 95-175 3-81 (115)
203 3n71_A Histone lysine methyltr 97.6 0.00026 8.9E-09 68.4 10.2 98 253-350 352-463 (490)
204 1zu2_A Mitochondrial import re 97.6 0.00022 7.6E-09 56.4 8.0 94 88-185 13-127 (158)
205 1zu2_A Mitochondrial import re 97.6 0.00012 4.2E-09 57.9 6.2 86 368-455 13-119 (158)
206 1na3_A Designed protein CTPR2; 97.5 0.00094 3.2E-08 47.5 10.4 61 394-455 11-71 (91)
207 3ma5_A Tetratricopeptide repea 97.4 0.00083 2.9E-08 49.1 8.7 64 391-455 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.2 0.0027 9.2E-08 46.3 9.0 58 80-138 10-67 (100)
209 3bee_A Putative YFRE protein; 97.1 0.0033 1.1E-07 45.0 8.7 65 425-490 4-71 (93)
210 3ly7_A Transcriptional activat 97.0 0.011 3.9E-07 53.8 13.0 74 424-501 274-347 (372)
211 3mkq_A Coatomer beta'-subunit; 96.9 0.042 1.4E-06 57.3 18.6 150 193-381 610-760 (814)
212 1pc2_A Mitochondria fission pr 96.7 0.011 3.6E-07 46.3 9.2 78 376-455 17-99 (152)
213 3ly7_A Transcriptional activat 96.7 0.063 2.1E-06 48.9 15.5 48 109-157 191-243 (372)
214 2kc7_A BFR218_protein; tetratr 96.7 0.022 7.6E-07 41.0 10.5 59 83-142 6-65 (99)
215 3mkq_A Coatomer beta'-subunit; 96.6 0.11 3.7E-06 54.1 19.2 154 85-277 607-761 (814)
216 3qww_A SET and MYND domain-con 96.5 0.016 5.5E-07 54.9 10.7 85 126-210 312-410 (433)
217 3qww_A SET and MYND domain-con 96.4 0.0073 2.5E-07 57.3 8.1 61 253-313 341-408 (433)
218 3qwp_A SET and MYND domain-con 96.4 0.012 4.1E-07 55.8 9.5 85 125-209 300-398 (429)
219 3mkq_B Coatomer subunit alpha; 96.2 0.3 1E-05 39.2 15.1 100 262-382 15-114 (177)
220 3qwp_A SET and MYND domain-con 96.2 0.019 6.6E-07 54.4 9.7 88 262-349 297-398 (429)
221 2kc7_A BFR218_protein; tetratr 96.2 0.038 1.3E-06 39.6 9.4 58 399-457 7-65 (99)
222 1wy6_A Hypothetical protein ST 96.0 0.32 1.1E-05 36.6 14.7 64 219-283 93-156 (172)
223 3bee_A Putative YFRE protein; 95.9 0.11 3.9E-06 36.8 10.4 47 128-175 25-71 (93)
224 2v5f_A Prolyl 4-hydroxylase su 95.9 0.08 2.7E-06 38.6 9.8 63 393-455 6-74 (104)
225 1wy6_A Hypothetical protein ST 95.9 0.39 1.3E-05 36.2 14.9 137 90-248 20-156 (172)
226 3u64_A Protein TP_0956; tetrat 95.8 0.18 6.1E-06 44.1 12.9 85 93-179 179-272 (301)
227 3u64_A Protein TP_0956; tetrat 95.7 0.21 7.3E-06 43.6 13.1 92 128-221 179-281 (301)
228 2v5f_A Prolyl 4-hydroxylase su 95.7 0.1 3.5E-06 38.0 9.7 65 77-141 5-75 (104)
229 3lvg_A Clathrin heavy chain 1; 95.4 0.0001 3.6E-09 68.4 -8.9 148 77-239 54-221 (624)
230 4h7y_A Dual specificity protei 95.3 0.29 9.9E-06 37.8 10.8 103 110-214 11-126 (161)
231 1pc2_A Mitochondria fission pr 95.2 0.23 7.9E-06 38.7 10.5 82 92-175 13-99 (152)
232 3lvg_A Clathrin heavy chain 1; 95.0 0.001 3.4E-08 62.0 -3.9 218 74-307 80-324 (624)
233 3mkq_B Coatomer subunit alpha; 95.0 1.1 3.8E-05 35.9 17.2 101 297-418 15-115 (177)
234 1nzn_A CGI-135 protein, fissio 94.9 0.17 5.9E-06 37.9 8.6 66 425-490 33-102 (126)
235 4h7y_A Dual specificity protei 94.1 1.3 4.6E-05 34.1 11.9 33 427-459 94-126 (161)
236 1nzn_A CGI-135 protein, fissio 93.6 0.45 1.5E-05 35.7 8.5 82 373-456 17-103 (126)
237 2ff4_A Probable regulatory pro 93.6 0.47 1.6E-05 44.2 10.6 69 395-464 174-247 (388)
238 4gns_B Protein CSD3, chitin bi 92.3 0.82 2.8E-05 46.2 10.8 126 81-209 252-398 (754)
239 4gns_B Protein CSD3, chitin bi 91.9 1.3 4.6E-05 44.7 11.8 127 152-279 253-398 (754)
240 1v54_E Cytochrome C oxidase po 91.5 1.5 5.2E-05 31.0 8.1 45 445-489 28-72 (109)
241 2ff4_A Probable regulatory pro 91.2 0.96 3.3E-05 42.1 9.5 72 115-187 174-250 (388)
242 4ady_A RPN2, 26S proteasome re 91.1 16 0.00055 37.9 32.7 274 226-511 383-675 (963)
243 3o48_A Mitochondria fission 1 90.9 4.1 0.00014 30.7 11.0 72 424-497 37-111 (134)
244 4b4t_P 26S proteasome regulato 90.3 12 0.00042 35.3 20.2 50 231-280 30-84 (445)
245 4fhn_B Nucleoporin NUP120; pro 90.3 7.6 0.00026 42.0 16.7 191 293-490 818-1049(1139)
246 4fhn_B Nucleoporin NUP120; pro 89.9 13 0.00045 40.1 18.1 87 252-340 899-989 (1139)
247 4b4t_P 26S proteasome regulato 89.3 15 0.00051 34.7 17.6 187 91-279 30-245 (445)
248 2y69_E Cytochrome C oxidase su 89.0 2.7 9.3E-05 31.5 8.1 63 445-508 71-133 (152)
249 1y8m_A FIS1; mitochondria, unk 88.3 7.1 0.00024 29.8 12.9 66 425-490 37-105 (144)
250 2wpv_A GET4, UPF0363 protein Y 87.8 14 0.00049 32.7 18.5 26 251-276 133-158 (312)
251 3o48_A Mitochondria fission 1 87.7 4.6 0.00016 30.4 8.9 69 388-456 36-107 (134)
252 1v54_E Cytochrome C oxidase po 87.1 6.3 0.00022 27.9 9.2 63 302-365 25-87 (109)
253 1zbp_A Hypothetical protein VP 86.7 1.9 6.4E-05 37.1 7.1 56 400-456 5-60 (273)
254 1y8m_A FIS1; mitochondria, unk 85.6 10 0.00035 28.9 10.4 68 389-456 36-106 (144)
255 2wpv_A GET4, UPF0363 protein Y 85.1 20 0.00069 31.8 18.8 23 137-159 82-104 (312)
256 3esl_A Checkpoint serine/threo 84.1 15 0.00051 30.0 10.9 56 406-461 93-149 (202)
257 3ffl_A Anaphase-promoting comp 83.7 9.2 0.00031 30.1 9.2 62 79-140 22-91 (167)
258 4b4t_R RPN7, 26S proteasome re 82.8 12 0.00041 35.2 11.6 97 114-210 133-236 (429)
259 2y69_E Cytochrome C oxidase su 81.8 15 0.0005 27.7 9.2 62 303-365 69-130 (152)
260 4b4t_R RPN7, 26S proteasome re 80.2 23 0.00078 33.3 12.6 61 149-209 133-195 (429)
261 1qsa_A Protein (soluble lytic 77.1 60 0.0021 32.1 27.2 135 88-233 17-152 (618)
262 3ffl_A Anaphase-promoting comp 75.8 27 0.00093 27.5 9.5 57 152-208 25-89 (167)
263 1zbp_A Hypothetical protein VP 74.3 17 0.00058 31.3 8.7 56 85-141 5-60 (273)
264 3lpz_A GET4 (YOR164C homolog); 73.4 51 0.0017 29.5 21.1 22 80-101 38-59 (336)
265 2keb_A DNA polymerase subunit 72.9 21 0.00073 24.9 7.6 63 446-510 28-95 (101)
266 4a1g_A Mitotic checkpoint seri 71.6 33 0.0011 26.5 10.2 65 445-513 83-148 (152)
267 3lpz_A GET4 (YOR164C homolog); 70.3 60 0.0021 29.0 23.3 27 319-345 133-159 (336)
268 3txn_A 26S proteasome regulato 70.2 68 0.0023 29.6 20.6 27 113-139 20-46 (394)
269 3eiq_C Programmed cell death p 67.7 72 0.0025 28.9 12.5 75 395-470 220-296 (358)
270 2wvi_A Mitotic checkpoint seri 66.3 46 0.0016 26.2 10.4 50 411-460 79-129 (164)
271 2uwj_G Type III export protein 65.7 32 0.0011 24.3 6.9 51 261-317 48-98 (115)
272 3eiq_C Programmed cell death p 65.4 20 0.00069 32.5 7.8 76 429-505 219-296 (358)
273 2p58_C Putative type III secre 65.1 34 0.0012 24.2 7.6 51 261-317 49-99 (116)
274 3esl_A Checkpoint serine/threo 64.2 58 0.002 26.6 9.8 54 162-215 94-148 (202)
275 2uwj_G Type III export protein 62.8 38 0.0013 23.9 7.1 78 92-177 21-98 (115)
276 3ltj_A Alpharep-4; protein eng 62.6 59 0.002 26.1 16.7 50 110-163 57-106 (201)
277 2p58_C Putative type III secre 61.9 39 0.0013 23.9 7.8 78 92-177 22-99 (116)
278 3ltm_A Alpha-REP4; protein eng 59.9 68 0.0023 26.0 16.6 28 251-279 156-183 (211)
279 4ady_A RPN2, 26S proteasome re 58.5 1.8E+02 0.0062 30.4 35.4 26 150-175 233-258 (963)
280 4aez_C MAD3, mitotic spindle c 57.6 44 0.0015 27.8 7.8 51 410-460 132-183 (223)
281 1wdy_A 2-5A-dependent ribonucl 56.8 18 0.00061 31.2 5.9 57 82-146 7-66 (285)
282 1k1a_A B-cell lymphoma 3-encod 56.5 38 0.0013 28.1 7.9 86 83-172 12-101 (241)
283 2qx5_A Nucleoporin NIC96; mRNA 56.2 1.6E+02 0.0056 29.2 16.1 46 78-125 154-199 (661)
284 2d2s_A Exocyst complex compone 55.7 62 0.0021 27.2 8.7 24 82-105 23-46 (235)
285 2r9g_A AAA ATPase, central reg 53.1 91 0.0031 25.3 10.3 37 299-336 26-62 (204)
286 3jxi_A Vanilloid receptor-rela 50.5 29 0.00099 29.5 6.2 57 83-139 8-73 (260)
287 2f6m_A Suppressor protein STP2 49.9 27 0.00093 22.3 4.1 48 79-127 4-51 (65)
288 1wdy_A 2-5A-dependent ribonucl 49.0 46 0.0016 28.4 7.4 88 117-216 7-99 (285)
289 3bge_A Predicted ATPase; struc 48.2 1.1E+02 0.0037 24.8 9.2 38 299-336 19-56 (201)
290 2nsz_A Programmed cell death p 48.2 83 0.0028 23.4 8.3 65 80-145 10-76 (129)
291 2ion_A PDCD4, programmed cell 48.1 63 0.0022 25.0 7.0 64 80-144 12-77 (152)
292 2nsz_A Programmed cell death p 47.8 84 0.0029 23.4 8.1 64 395-459 10-75 (129)
293 1k1a_A B-cell lymphoma 3-encod 46.7 65 0.0022 26.6 7.8 58 119-180 13-72 (241)
294 2d2s_A Exocyst complex compone 45.6 1.4E+02 0.0046 25.2 9.4 89 118-209 24-118 (235)
295 4a1g_A Mitotic checkpoint seri 44.4 1.1E+02 0.0037 23.7 9.0 51 165-215 83-134 (152)
296 3eu9_A Huntingtin-interacting 43.5 29 0.00099 28.8 5.0 45 86-134 15-61 (240)
297 2zu6_B Programmed cell death p 43.3 1.5E+02 0.005 26.2 9.4 68 395-463 169-238 (307)
298 2zu6_B Programmed cell death p 42.7 88 0.003 27.6 7.9 68 430-498 169-238 (307)
299 3eyy_A Putative iron uptake re 41.9 1.1E+02 0.0038 23.2 7.6 55 453-509 10-64 (145)
300 2ion_A PDCD4, programmed cell 41.8 81 0.0028 24.4 6.7 69 394-463 11-81 (152)
301 2fe3_A Peroxide operon regulat 41.6 1.1E+02 0.0039 23.2 8.6 56 453-509 13-68 (145)
302 3ctd_A Putative ATPase, AAA fa 41.4 1.5E+02 0.005 24.3 10.1 38 299-336 47-84 (213)
303 3ltm_A Alpha-REP4; protein eng 41.0 1.4E+02 0.0048 24.0 17.8 80 250-337 124-203 (211)
304 3pvs_A Replication-associated 40.5 2.4E+02 0.008 26.5 13.4 38 299-336 267-304 (447)
305 2fu4_A Ferric uptake regulatio 39.5 82 0.0028 20.9 8.2 59 452-511 7-66 (83)
306 2w57_A Ferric uptake regulatio 39.1 1.3E+02 0.0044 23.0 7.9 56 453-509 8-64 (150)
307 1mzb_A Ferric uptake regulatio 39.0 1.2E+02 0.0041 22.7 8.6 57 453-510 9-66 (136)
308 3mv2_A Coatomer subunit alpha; 38.1 2.1E+02 0.0073 25.3 10.6 128 367-513 124-256 (325)
309 2xig_A Ferric uptake regulatio 37.5 1.4E+02 0.0047 22.9 8.8 57 453-510 18-74 (150)
310 2wvi_A Mitotic checkpoint seri 36.8 1.5E+02 0.0052 23.2 9.3 51 165-215 78-129 (164)
311 2xig_A Ferric uptake regulatio 36.4 1.3E+02 0.0043 23.1 7.2 32 188-219 32-63 (150)
312 3txn_A 26S proteasome regulato 33.2 2.9E+02 0.0099 25.4 25.5 57 258-314 105-166 (394)
313 2fe3_A Peroxide operon regulat 32.9 1.3E+02 0.0043 22.9 6.6 15 198-212 37-51 (145)
314 2r9g_A AAA ATPase, central reg 32.9 2E+02 0.0068 23.4 10.6 62 82-144 16-85 (204)
315 4ets_A Ferric uptake regulatio 32.2 1.7E+02 0.0057 22.8 7.3 54 454-508 25-80 (162)
316 3hra_A Ankyrin repeat family p 32.1 66 0.0023 25.7 5.3 16 86-101 11-26 (201)
317 1oai_A Nuclear RNA export fact 31.8 35 0.0012 21.3 2.6 23 90-112 33-56 (59)
318 3t8k_A Uncharacterized protein 31.6 1.9E+02 0.0066 22.8 9.9 125 87-216 13-148 (186)
319 2ijq_A Hypothetical protein; s 31.5 1.9E+02 0.0063 22.6 7.5 52 439-490 44-103 (161)
320 1ug3_A EIF4GI, eukaryotic prot 31.2 89 0.003 28.1 6.3 24 220-243 14-37 (339)
321 3kea_A K1L; tropism, ANK repea 31.2 92 0.0031 26.9 6.3 18 84-101 35-52 (285)
322 4b4t_S RPN3, 26S proteasome re 30.4 3.7E+02 0.013 25.8 12.3 63 78-140 232-298 (523)
323 2ijq_A Hypothetical protein; s 30.4 1.9E+02 0.0066 22.5 7.8 50 126-175 46-103 (161)
324 3kea_A K1L; tropism, ANK repea 29.9 94 0.0032 26.8 6.2 44 121-168 37-80 (285)
325 3bge_A Predicted ATPase; struc 29.5 2.3E+02 0.0077 23.0 9.1 39 83-121 10-51 (201)
326 1mzb_A Ferric uptake regulatio 29.4 1.3E+02 0.0043 22.6 6.0 21 198-218 34-54 (136)
327 4fke_A Aminopeptidase N; zinc 29.4 5.1E+02 0.017 27.0 18.0 88 118-210 692-786 (909)
328 3kae_A CDC27, possible protein 29.0 2.2E+02 0.0074 22.6 7.9 26 428-453 115-140 (242)
329 2b7e_A PRE-mRNA processing pro 28.3 49 0.0017 20.7 2.7 29 94-122 3-31 (59)
330 3aji_A 26S proteasome non-ATPa 26.8 1.1E+02 0.0037 25.0 5.8 59 83-146 9-67 (231)
331 2yru_A Steroid receptor RNA ac 26.6 1.1E+02 0.0038 22.4 4.9 42 99-140 48-89 (118)
332 2w57_A Ferric uptake regulatio 26.5 1.4E+02 0.0048 22.8 5.9 22 198-219 33-54 (150)
333 3mwm_A ZUR, putative metal upt 26.5 1.5E+02 0.0052 22.3 6.0 42 468-509 19-60 (139)
334 2keb_A DNA polymerase subunit 25.9 1.7E+02 0.0059 20.5 6.7 31 411-441 28-58 (101)
335 3t8k_A Uncharacterized protein 25.8 2.4E+02 0.0084 22.2 8.2 26 191-216 44-69 (186)
336 3i5p_A Nucleoporin NUP170; hel 25.8 2.3E+02 0.0079 27.2 8.2 33 251-283 216-248 (525)
337 1qsa_A Protein (soluble lytic 25.7 4.9E+02 0.017 25.6 36.7 336 83-451 78-437 (618)
338 3ctd_A Putative ATPase, AAA fa 25.6 2.8E+02 0.0095 22.7 10.2 63 82-144 37-107 (213)
339 2o03_A Probable zinc uptake re 25.5 1.6E+02 0.0053 21.8 5.8 41 436-476 19-59 (131)
340 4ets_A Ferric uptake regulatio 24.4 1.4E+02 0.0048 23.3 5.5 20 191-210 41-60 (162)
341 2i2x_B MTAC, methyltransferase 23.8 53 0.0018 28.2 3.2 39 474-512 48-86 (258)
342 3eyy_A Putative iron uptake re 23.8 1.2E+02 0.0041 23.0 5.0 13 200-212 35-47 (145)
343 3eu9_A Huntingtin-interacting 23.6 85 0.0029 25.7 4.6 85 83-180 45-135 (240)
344 2p22_A Suppressor protein STP2 23.3 1E+02 0.0036 24.3 4.4 56 74-130 108-163 (174)
345 4gq2_M Nucleoporin NUP120; bet 23.1 4.7E+02 0.016 27.4 10.8 88 398-491 816-926 (950)
346 4gq2_M Nucleoporin NUP120; bet 22.6 3.3E+02 0.011 28.7 9.5 48 254-301 899-950 (950)
347 1zl8_A LIN-7; heterodimer, alp 22.2 1.3E+02 0.0046 17.9 3.9 21 91-111 7-27 (53)
348 3dfg_A Xcrecx, regulatory prot 22.2 2.8E+02 0.0095 21.5 14.3 84 74-179 14-97 (162)
349 3ltj_A Alpharep-4; protein eng 21.7 3E+02 0.01 21.7 19.2 81 110-198 26-106 (201)
350 3jxi_A Vanilloid receptor-rela 21.3 1.7E+02 0.0058 24.4 6.1 55 120-174 10-73 (260)
351 3hra_A Ankyrin repeat family p 21.3 88 0.003 24.9 4.1 14 307-320 158-171 (201)
352 2cwy_A Hypothetical protein TT 21.3 2.1E+02 0.0072 19.8 5.7 51 438-490 12-67 (94)
353 1ug3_A EIF4GI, eukaryotic prot 21.2 1.8E+02 0.0061 26.0 6.3 63 80-143 14-77 (339)
354 2rfa_A Transient receptor pote 20.4 3.4E+02 0.012 21.9 7.9 20 83-102 40-59 (232)
355 3twr_A Tankyrase-2; ankyrin re 20.4 2E+02 0.0067 21.8 5.9 18 84-101 12-29 (165)
356 3rjo_A Endoplasmic reticulum a 20.2 5.1E+02 0.017 23.8 19.1 93 113-212 198-297 (419)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-39 Score=325.72 Aligned_cols=427 Identities=10% Similarity=0.003 Sum_probs=309.3
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
+.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 4467889999999999999999999999999865 578899999999999999999999999988653 688999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHH-Hc--------------CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010236 153 LLRGFLKKGLLGLGSRLLMVME-DM--------------GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS 217 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~-~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 217 (514)
++.+|.+.|++++|.++|+++. .. +..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 9999999999999999999532 21 22346889999999999999999999999999876432 22
Q ss_pred hhHHHH--------------------------------------HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010236 218 FVYGKV--------------------------------------IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (514)
Q Consensus 218 ~~~~~l--------------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (514)
..+..+ +..|.+.|++++|.++|+++.+. +++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 222222 33445567777777777777654 46777777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010236 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
.+|.+.|++++|.++|+++.+.+. .+..+|+.++.++.+.|++++|..+++++.+. .+.+..++..++..|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHH
Confidence 777777777777777777765432 25556677777777777777777777777653 2335666667777777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766643 34566677777777777777777777777665532 355667777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010236 420 PEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 546 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS- 546 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 543 345666777777777777777777777776554 44555 5667777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 010236 494 TPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 494 ~p~~~~~~~l~~a~~~~~~ 512 (514)
+.+..++..+..++...|+
T Consensus 547 p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCC
Confidence 2356666666666665543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-37 Score=314.11 Aligned_cols=421 Identities=12% Similarity=0.026 Sum_probs=366.4
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-c----------
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC-F---------- 141 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~---------- 141 (514)
..|+..+|..++..|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|.++|+++.. .
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 190 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence 3567789999999999999999999999998654 67899999999999999999999999995322 1
Q ss_pred ----CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHH------------------------------
Q 010236 142 ----GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEI------------------------------ 187 (514)
Q Consensus 142 ----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------------------------ 187 (514)
|.+++..+|+.++.+|.+.|++++|.++|+++.+.++ .+...+..
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 2234688999999999999999999999999988653 23333333
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010236 188 --------LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSII 259 (514)
Q Consensus 188 --------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 259 (514)
++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence 355666889999999999999876 5799999999999999999999999999999876 44788899999
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010236 260 DTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 260 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
..|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +.+..++..++.++.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998653 4578899999999999999999999999998753 336889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010236 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLME 419 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 419 (514)
+|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 45788999999999999999999999999998753 478899999999999999999999999998
Q ss_pred hC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCC
Q 010236 420 PE----GIEPN--LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 420 ~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 493 (514)
+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+. .+..+|..+..+|.+.|++++|.+.++++.+ +
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 579 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLA--I 579 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c
Confidence 75 56777 78999999999999999999999999988653 3889999999999999999999999999998 5
Q ss_pred CCC-HHHHHHHHHH
Q 010236 494 TPD-RKARQILQSA 506 (514)
Q Consensus 494 ~p~-~~~~~~l~~a 506 (514)
.|+ ...+..+.+.
T Consensus 580 ~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 580 SPNEIMASDLLKRA 593 (597)
T ss_dssp CTTCHHHHHHHHHT
T ss_pred CCCChHHHHHHHHH
Confidence 664 4455555443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.4e-28 Score=234.19 Aligned_cols=383 Identities=14% Similarity=0.049 Sum_probs=286.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4556778899999999999887764 4456677777788888999999999998888764 5677889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 010236 163 LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEE 242 (514)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 242 (514)
+++|.+.|+++.+..+ .+..+|..+...+.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999887543 34567888889999999999999999888876322 445666777788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010236 243 IREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 243 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
+.+.. +.+..+|+.+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|+..+++..+.. +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 88764 4467788888888888888888888888887653 2356677778888888888888888888877642 2246
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010236 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAY 402 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 402 (514)
.++..+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 677777778888888888888888877764 3456667777777777777777777777777653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010236 403 AQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 403 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
...|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.... +...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 77777777777777776642 345666777777777777777777777777664322 4555666655555444
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-31 Score=260.62 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=121.2
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010236 96 AMALLAQMQALGFHPSS-ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 96 A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
+..+.+++.+++..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 33444555555444333 235556666666666666666666666666666666666666666554432110
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 010236 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
.+.+.+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01122455666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010236 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 334 (514)
||.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666665553
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.6e-31 Score=260.67 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=159.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCChH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---------TLEADAIFQEMVCFGFNPKLR 148 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~g~~~~~~ 148 (514)
..++.+|++|++.|++++|+++|++|.+.|++||..+|+++|.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45889999999999999999999999999999999999999999997765 567888888888888888888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010236 149 FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010236 229 DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (514)
+.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888877777653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=1.1e-27 Score=229.61 Aligned_cols=382 Identities=14% Similarity=0.058 Sum_probs=330.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC
Q 010236 118 LIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 197 (514)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence 3566778999999999999998864 45667788888899999999999999999887654 678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010236 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
+++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.+ +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 2256679999999999999999999999999875 34567788889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH
Q 010236 278 MQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG 357 (514)
Q Consensus 278 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (514)
+.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 98763 2357899999999999999999999999999864 3357788889999999999999999999998875 4568
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 010236 358 AIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (514)
.++..+...|.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|.+.++++.+.. +.+..+|..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 8899999999999999999999999998653 357789999999999999999999999998874 66889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010236 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
.+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+ +.|+ ...+..+...+...+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999998753 33678999999999999999999999999997 5664 556666666555443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.9e-25 Score=217.11 Aligned_cols=410 Identities=10% Similarity=-0.007 Sum_probs=323.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|.+.++++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456778889999999999999999999874 799999999999999999999999999999875 5667899999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------------------
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------------------------- 211 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 211 (514)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998764 34444444444444333323222222111100
Q ss_pred ----------CC---------CCChhhHHHHHHHHHc---cCChHHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 010236 212 ----------GF---------QLNSFVYGKVIGLYRD---NGMWKKAVGIVEEIRE-----MGL--------SLDRQIYN 256 (514)
Q Consensus 212 ----------g~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 256 (514)
.. +.+...+......+.. .|++++|...++++.+ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00 0113334444444444 8999999999999887 311 22456788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
.+...+...|++++|...|+++.+.. |+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999988764 347888889999999999999999999998753 336678888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010236 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQ 416 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 416 (514)
++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998875 44677888999999999999999999999987643 356778889999999999999999999
Q ss_pred HhhhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHH
Q 010236 417 LMEPEGI-EPN----LVMLNVLINAFGV---AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQM 488 (514)
Q Consensus 417 ~~~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 488 (514)
++.+... .++ ...|..+..++.. .|++++|.+.++++.+... .+..++..+..++.+.|++++|.+.+++.
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8876421 111 3488899999999 9999999999999987643 36778899999999999999999999999
Q ss_pred HhCCCCCCHH
Q 010236 489 ESSGCTPDRK 498 (514)
Q Consensus 489 ~~~g~~p~~~ 498 (514)
.+ +.|+..
T Consensus 476 ~~--~~~~~~ 483 (514)
T 2gw1_A 476 AD--LARTME 483 (514)
T ss_dssp HH--HCSSHH
T ss_pred HH--hccccH
Confidence 98 566654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=8.9e-23 Score=199.48 Aligned_cols=314 Identities=11% Similarity=0.050 Sum_probs=184.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45677788888888888888888888887653 4567778888888888888888888888887765 455677788888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQ---ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
+|.+.|++++|.+.|+++.+... .+. ..+..++..+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 88888888888888888877543 233 5555554441111 11122233445555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010236 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQ 312 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 312 (514)
+++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666665555442 3345555556666666666666666666555431 22455566666666666666666666666
Q ss_pred HHHCCCCCC-HHHHHHH------------HHHHHccCCHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCcchH
Q 010236 313 MQEQGFYPD-PKIFITI------------ISCLGELGKWDVIKKNFENMKDRGHGKI---GAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 313 m~~~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 376 (514)
+.+. .|+ ...+..+ ...+.+.|++++|...++.+.+...... ...+..+..++.+.|++++|
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5543 222 2222222 4445555555555555555554321100 22445555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 010236 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEP 420 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 420 (514)
...++++.... +.+...|..+..+|...|++++|...++++.+
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55555554432 12445555555555555555555555555554
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.2e-22 Score=196.73 Aligned_cols=361 Identities=13% Similarity=0.052 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010236 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
.+...+.+..... +.+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444444332 3455666677777777777777777777766643 4456666677777777777777777777766
Q ss_pred HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 010236 175 DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNS---FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD 251 (514)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 251 (514)
+.++ .+...|..+...|.+.|++++|.+.|+++.+.... +. ..+..+...+..
T Consensus 88 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---------------------- 143 (450)
T 2y4t_A 88 QLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM---------------------- 143 (450)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH----------------------
T ss_pred hcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH----------------------
Confidence 6543 34556666666666677777777776666654211 12 333333332111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010236 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISC 331 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 331 (514)
..+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 144 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 -QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112334556888999999999999998753 3478889999999999999999999999998753 3468899999999
Q ss_pred HHccCCHHHHHHHHHHHHhcCCCCcHHHHHHH------------HHHHHhcCCcchHHHHHHHHHHcCCCCC----HHHH
Q 010236 332 LGELGKWDVIKKNFENMKDRGHGKIGAIYAIL------------VDIYGQYGRFRDPEECIAALKLEGLQPS----GSMF 395 (514)
Q Consensus 332 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~ 395 (514)
+...|++++|...++.+.+.. +.+...+..+ ...+.+.|++++|...|+++...... + ...|
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~ 298 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSK 298 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHH
Confidence 999999999999999998765 3345555544 88899999999999999999886432 2 3478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH-----
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK----- 470 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~----- 470 (514)
..+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|.+.|+++.+.... +...+..+..
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHh
Confidence 888999999999999999999988763 447899999999999999999999999999885433 5666666663
Q ss_pred -------HHHcCC-----CcchHHHHHHHH
Q 010236 471 -------AFIRAK-----KFHKVPEIYKQM 488 (514)
Q Consensus 471 -------~~~~~g-----~~~~a~~~~~~m 488 (514)
.|...| +.+++.+.++++
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 344445 556778888863
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.4e-22 Score=202.89 Aligned_cols=402 Identities=11% Similarity=0.055 Sum_probs=309.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34677889999999999999999999999875 5678899999999999999999999999999876 567889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCChhh----------
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQLNSFV---------- 219 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~---------- 219 (514)
++...|++++|.+.|+.+.. . |+ .....+..+...+....|...++++... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL-N--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc-C--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999974422 1 22 2222344555556667788888777442 11122111
Q ss_pred --------------------HHHHHHHHHc--------cCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHhc
Q 010236 220 --------------------YGKVIGLYRD--------NGMWKKAVGIVEEIREMGLSLD-------RQIYNSIIDTFGK 264 (514)
Q Consensus 220 --------------------~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 264 (514)
...+...+.. .|++++|..+++++.+.. +.+ ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 1112222111 247889999999988764 223 2356677778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010236 265 YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKN 344 (514)
Q Consensus 265 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 344 (514)
.|++++|.+.|++..+. .|+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999875 4567888889999999999999999999998753 33678888999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--
Q 010236 345 FENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-- 422 (514)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 422 (514)
++++.+.. +.+...+..+...|...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+..
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99998875 44567888899999999999999999999988753 356688889999999999999999999886542
Q ss_pred ---CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 423 ---IEPNLVMLNVLINAFGVA----------GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 423 ---~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.......+..+..++... |++++|...|+++.+.... +...+..+..+|.+.|++++|.+.+++..
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111223345556777777 9999999999999876433 67889999999999999999999999998
Q ss_pred hC
Q 010236 490 SS 491 (514)
Q Consensus 490 ~~ 491 (514)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 84
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.3e-22 Score=198.02 Aligned_cols=375 Identities=9% Similarity=-0.037 Sum_probs=299.2
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
|+...|..+...|.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|+++.+.+ +++......++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence 578899999999999999999999999999875 5567899999999999999999999999999876 34545555555
Q ss_pred HHHHhcCChhhHHHHHHHHHH-----------------------------------cCC---------CcChHhHHHHHH
Q 010236 155 RGFLKKGLLGLGSRLLMVMED-----------------------------------MGI---------CRNQETYEILLD 190 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~-----------------------------------~~~---------~~~~~~~~~li~ 190 (514)
..+.+......+.+.+..+.. ... +.+...+.....
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 544443322222222211110 000 111444444555
Q ss_pred HHHh---cCCHHHHHHHHHHHHH-----cCC--------CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 010236 191 YHVN---AGRLDDTWLIINEMRS-----KGF--------QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQI 254 (514)
Q Consensus 191 ~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 254 (514)
.+.. .|++++|...|+++.. ... +.+..++..+...+...|++++|...++++.+... +...
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHH
Confidence 4554 8999999999999988 311 22356777888999999999999999999998753 3888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010236 255 YNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGE 334 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 334 (514)
+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|+..++++.+... .+...+..+...+..
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHH
Confidence 9999999999999999999999998764 33677889999999999999999999999998643 356788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHh---cC
Q 010236 335 LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQ---QG 406 (514)
Q Consensus 335 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~---~g 406 (514)
.|++++|...++.+.+.. +.+..++..+...|.+.|++++|...++++...... ++ ...+..+...+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999998864 446778899999999999999999999998765322 11 3478889999999 99
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
++++|.+.++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+..
T Consensus 430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9999999999998764 4567889999999999999999999999998854
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=4.6e-20 Score=184.51 Aligned_cols=385 Identities=11% Similarity=0.106 Sum_probs=296.3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.++ .+...|..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4567888899999999999999999999875 56788999999999999999999999999998764 567899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCHH------------
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG------LSLDRQ------------ 253 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------ 253 (514)
+...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+.... ..|+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 32 2221 1222334445555677888888775431 112211
Q ss_pred ------------------HHHHHHHHHhcc--------CCHHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHh
Q 010236 254 ------------------IYNSIIDTFGKY--------GELVEALEVFEKMQQESIRPD--------IVTWNSLIRWHCK 299 (514)
Q Consensus 254 ------------------~~~~li~~~~~~--------~~~~~A~~~~~~m~~~~~~p~--------~~~~~~li~~~~~ 299 (514)
....+...+... |++++|..+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 222333333222 47899999999998753 33 2356677788899
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHH
Q 010236 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (514)
.|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999985 4668888889999999999999999999999875 45688899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010236 380 IAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
++++..... .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+....
T Consensus 333 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 999988753 356788899999999999999999999998864 456778999999999999999999999998754211
Q ss_pred -----cCHHHHHHHHHHHHcC----------CCcchHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhhh
Q 010236 460 -----PDLVTYSTLMKAFIRA----------KKFHKVPEIYKQMESSGCTP-DRKARQILQSALVVLEQ 512 (514)
Q Consensus 460 -----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~a~~~~~~ 512 (514)
.....+.....++.+. |++++|...++++.+. .| +...+..+...+...|+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcc
Confidence 1122344556677777 9999999999999984 44 45677777777776654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=7.1e-19 Score=166.00 Aligned_cols=333 Identities=11% Similarity=0.047 Sum_probs=204.4
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010236 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL 226 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 226 (514)
+..+..+...+.+.|++++|...|+++.+..+ .+...|..+...+...|++++|...++++.+... -+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHH
Confidence 45566666777777777777777777766543 3456666777777777777777777777666532 245566666666
Q ss_pred HHccCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010236 227 YRDNGMWKKAVGIVEEIREMGLS--LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 77777777777777776654210 12333333311000 001112234555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
+|+..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666655432 2244555555556666666666666666665543 3345556666666666666666666666665
Q ss_pred HcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 010236 385 LEGLQPSGSMFC------------ILANAYAQQGLCEQTVKVLQLMEPEGIEPNL----VMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 385 ~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~ 448 (514)
+... .+...+. .+...+.+.|++++|.+.++++.+.. +.+. ..+..+..++...|++++|.+
T Consensus 216 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 5432 1222222 23556778888888888888887753 2223 234557788888899999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhh
Q 010236 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD-RKARQILQSALVVLE 511 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~a~~~~~ 511 (514)
.++++.+... .+..+|..+..++...|++++|.+.++++.+ +.|+ ...+..+.++....+
T Consensus 294 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 294 ICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHH
Confidence 9988877532 2677888888888889999999999998887 4565 455566666555444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=5.2e-19 Score=166.95 Aligned_cols=332 Identities=13% Similarity=0.056 Sum_probs=224.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
|...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+... .+...|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 46678889999999999999999999999875 56788999999999999999999999999988653 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQ--LNSFVYGKV------------IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYN 256 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (514)
.+...|++++|...|++..+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999876320 133444433 344555555556655555555543 33455555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 257 SIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 257 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
.+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ------ 230 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH------
Confidence 55555555555555555555555432 2244555555555555555555555555555421 111111111100
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 010236 337 KWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTV 412 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~ 412 (514)
+. .......+...+.+.|++++|...++++...... +. ..+..+...+...|++++|.
T Consensus 231 -----------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 231 -----------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp -----------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 00 0111223356677888888888888888776432 22 23445677888889999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 413 KVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 413 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
+.+++..+.. +.+..+|..+..++...|++++|.+.|+++.+.... +...+..+..+..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence 9998888763 447788888899999999999999999998875432 4555666555443
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.7e-17 Score=163.72 Aligned_cols=354 Identities=12% Similarity=0.044 Sum_probs=297.1
Q ss_pred CcchHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCh
Q 010236 76 SGNSYNKSIQYCCK----LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKL 147 (514)
Q Consensus 76 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~ 147 (514)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45566667777777 899999999999998865 67788888889988 899999999999998865 56
Q ss_pred HhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhh
Q 010236 148 RFYNILLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 148 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|++.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777788888888 789999999999998864 56678888888887 789999999999998875 6778
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010236 220 YGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWN 291 (514)
Q Consensus 220 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (514)
+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 899999999999998875 66778888888876 789999999999988764 566777
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 010236 292 SLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGEL-----GKWDVIKKNFENMKDRGHGKIGAIYAI 362 (514)
Q Consensus 292 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (514)
.+...|.. .+++++|+.+|++..+.| +...+..+...+... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 78778877 899999999999998764 556677777777776 89999999999998876 4567777
Q ss_pred HHHHHHhcC---CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 010236 363 LVDIYGQYG---RFRDPEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLIN 435 (514)
Q Consensus 363 li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 435 (514)
+...|...| +.++|.++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7889999999998764 56778888888888 789999999999998865 5778888999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCC
Q 010236 436 AFGV----AGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 436 ~~~~----~g~~~~A~~~~~~m~~~~~~ 459 (514)
.|.. .+++++|...|++..+.+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9988 89999999999999887643
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=5.5e-17 Score=159.99 Aligned_cols=365 Identities=12% Similarity=0.012 Sum_probs=310.1
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhhHH
Q 010236 96 AMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLK----KGLLGLGS 167 (514)
Q Consensus 96 A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 167 (514)
+++.+++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455566665543 77788888888887 899999999999998864 56788889999998 89999999
Q ss_pred HHHHHHHHcCCCcChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCChHHHHHH
Q 010236 168 RLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD----NGMWKKAVGI 239 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~ 239 (514)
+.|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .+++++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998864 56777888888888 889999999999998876 56778888888887 7899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 010236 240 VEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFT 311 (514)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 311 (514)
|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|..+|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 77888889998987 899999999999998874 67788888888886 889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----CCcchHHHHHHH
Q 010236 312 QMQEQGFYPDPKIFITIISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY-----GRFRDPEECIAA 382 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 382 (514)
+..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|... ++.++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998764 55667777777777 899999999999998775 466777888888887 899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 010236 383 LKLEGLQPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKD 455 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 455 (514)
..+.+ +...+..+...|...| +.++|.+.|++..+.| +...+..+...|.. .+++++|.+.|++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98865 4467777888887766 8899999999998864 67888999999998 8999999999999998
Q ss_pred CCCCcCHHHHHHHHHHHHc----CCCcchHHHHHHHHHhCCC
Q 010236 456 IGISPDLVTYSTLMKAFIR----AKKFHKVPEIYKQMESSGC 493 (514)
Q Consensus 456 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 493 (514)
.| +...+..|...|.. .++.++|.+.|++..+.|.
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 75 56788889999988 8999999999999998663
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.5e-17 Score=165.67 Aligned_cols=408 Identities=9% Similarity=0.054 Sum_probs=300.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|..+|++++... |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5568988998 478999999999999999863 5577889999999999999999999999999864 68888877775
Q ss_pred HH-HhcCChhhHHH----HHHHHHHc-CCCc-ChHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCChhh
Q 010236 156 GF-LKKGLLGLGSR----LLMVMEDM-GICR-NQETYEILLDYHVN---------AGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 156 ~~-~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
.. ...|+.+.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++............
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 45688887765 77766543 4433 46788888877655 6889999999999987311111233
Q ss_pred HHHHHHHH-------------HccCChHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHhcc----
Q 010236 220 YGKVIGLY-------------RDNGMWKKAVGIVEEIR------EMG---LSLD--------RQIYNSIIDTFGKY---- 265 (514)
Q Consensus 220 ~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 265 (514)
|....... ...+++..|..++++.. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 33322211 12355677777776632 221 2333 24566655443322
Q ss_pred CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 010236 266 GEL----VEALEVFEKMQQESIRPDIVTWNSLIRWHCK-------AGDVA-------KALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 266 ~~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
++. +.+..+|++..... +.+...|...+..+.+ .|+++ +|..+|++..+.-.+-+...+..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 47778898887652 3467888888888775 79987 89999999986322335788888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcC
Q 010236 328 IISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA-YAQQG 406 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g 406 (514)
++..+.+.|++++|..+|+++++.........|..++..+.+.|++++|.++|++..+.... +...|...+.. +...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcC
Confidence 99999999999999999999998642211358889999999999999999999999876322 22333322222 34689
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CcC--HHHHHHHHHHHHcCCCcchHHH
Q 010236 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGI-SPD--LVTYSTLMKAFIRAKKFHKVPE 483 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~ 483 (514)
+.++|.++|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 34678999999999999999999999999988643 232 4578888888889999999999
Q ss_pred HHHHHHh
Q 010236 484 IYKQMES 490 (514)
Q Consensus 484 ~~~~m~~ 490 (514)
+.+++.+
T Consensus 485 ~~~r~~~ 491 (530)
T 2ooe_A 485 VEKRRFT 491 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2e-18 Score=160.94 Aligned_cols=292 Identities=11% Similarity=-0.068 Sum_probs=220.4
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455667778888889999999999999988774 4556677778888899999999999999998864 4567788888
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010236 154 LRGFLKKG-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 154 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
...+...| ++++|.+.|++..+... .+...|..+...+...|++++|.+.+++..+.... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 89999999 89999999999887653 45677888888889999999999999888876433 45666677888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChH
Q 010236 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES--------IRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.+...|..+...+.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888764 4567778888888888888888888888776531 1233567777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhcCC
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIY-GQYGR 372 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 372 (514)
+|+..+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 8888888777643 2245666677777777777777777777776654 34555666666655 33443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-18 Score=161.65 Aligned_cols=291 Identities=8% Similarity=0.006 Sum_probs=169.9
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010236 181 NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID 260 (514)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 260 (514)
+...+..+...+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 334444555555555555555555555554421 133344444455555555555555555555442 234445555555
Q ss_pred HHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 010236 261 TFGKYG-ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWD 339 (514)
Q Consensus 261 ~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 339 (514)
.+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|+..++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 555555 5666666665555432 12344555556666666666666666666555321 12344444555566666666
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 010236 340 VIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG--------LQPSGSMFCILANAYAQQGLCEQT 411 (514)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 411 (514)
+|...++.+.+.. +.+..++..+...+...|++++|...+++..... ...+..++..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 6666666665543 3345566666666666666666666666665431 122345677777778888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HcCCCc
Q 010236 412 VKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF-IRAKKF 478 (514)
Q Consensus 412 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~ 478 (514)
.+.+++..+.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCch
Confidence 88888777653 345677778888888888888888888887764322 566677777766 345543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.7e-18 Score=164.26 Aligned_cols=289 Identities=11% Similarity=-0.038 Sum_probs=195.2
Q ss_pred CCHHHHHH-HHHHHHHcCC---CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010236 196 GRLDDTWL-IINEMRSKGF---QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 196 g~~~~A~~-~~~~m~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
|++++|.+ .|++...... ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 4444332211 1123445555566666666666666666666543 33555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH---------------HHHHHHHccC
Q 010236 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFI---------------TIISCLGELG 336 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~---------------~ll~~~~~~~ 336 (514)
.+.|+++.+.. +.+..++..+...+...|++++|+..++++.+.... +...+. ..+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666665542 224556666666666666666666666666653211 111111 0233334788
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010236 337 KWDVIKKNFENMKDRGHGK-IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVL 415 (514)
Q Consensus 337 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 415 (514)
++++|...++.+.+..... +..++..+...|.+.|++++|...++++.... +.+...|..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999999988765332 57888899999999999999999999988764 345778999999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc----------CHHHHHHHHHHHHcCCCcchHHHHH
Q 010236 416 QLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP----------DLVTYSTLMKAFIRAKKFHKVPEIY 485 (514)
Q Consensus 416 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~ 485 (514)
+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..++...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9988763 4567889999999999999999999999987642221 1678999999999999999999887
Q ss_pred HHHH
Q 010236 486 KQME 489 (514)
Q Consensus 486 ~~m~ 489 (514)
++..
T Consensus 354 ~~~l 357 (368)
T 1fch_A 354 ARDL 357 (368)
T ss_dssp TTCH
T ss_pred HHHH
Confidence 7443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=2.5e-16 Score=156.97 Aligned_cols=399 Identities=10% Similarity=0.068 Sum_probs=287.0
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 010236 100 LAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC 179 (514)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (514)
|++..+.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|+++.|.++|++.....
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444443 557889999998 478999999999999999864 5677889999999999999999999999998854
Q ss_pred cChHhHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-ChhhHHHHHHHHHc---------cCChHHHHHHHHHH
Q 010236 180 RNQETYEILLDYH-VNAGRLDDTWL----IINEMRSK-GFQL-NSFVYGKVIGLYRD---------NGMWKKAVGIVEEI 243 (514)
Q Consensus 180 ~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~ 243 (514)
|+...|..++... ...|+.++|.+ +|++.... |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777888887644 35677776665 77766543 5444 45677777766554 68899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH-------------hccCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHH
Q 010236 244 REMGLSLDRQIYNSIIDTF-------------GKYGELVEALEVFEKMQ------QES---IRPD--------IVTWNSL 293 (514)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~~---~~p~--------~~~~~~l 293 (514)
++.........|....... .+.++++.|..++..+. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832111123444332211 13456777887776632 221 2444 2456655
Q ss_pred HHHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhc
Q 010236 294 IRWHCKA----GDV----AKALELFTQMQEQGFYPDPKIFITIISCLGE-------LGKWD-------VIKKNFENMKDR 351 (514)
Q Consensus 294 i~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~ 351 (514)
+...... ++. +++..+|++.... .+-++..|..+...+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433322 232 4778899998875 23467778877777765 78887 899999999873
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 010236 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS-GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVML 430 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 430 (514)
-.+.+...|..++..+.+.|++++|..+|+++.+... .+ ...|..++..+.+.|++++|.++|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 3456788999999999999999999999999998532 13 3578888888889999999999999998762 2233333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCC-CCCC--HHHHHHHHHH
Q 010236 431 NVLINA-FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPD--RKARQILQSA 506 (514)
Q Consensus 431 ~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~l~~a 506 (514)
...+.. +...|++++|..+|++..+... .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...++.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 333322 3468999999999999987532 267889999999999999999999999999863 3343 3355444443
Q ss_pred H
Q 010236 507 L 507 (514)
Q Consensus 507 ~ 507 (514)
.
T Consensus 473 e 473 (530)
T 2ooe_A 473 E 473 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=4.2e-18 Score=161.52 Aligned_cols=289 Identities=12% Similarity=0.040 Sum_probs=169.8
Q ss_pred HhcCCHHHHHH-HHHHHHHCCC-CC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 88 CKLGDIDEAMA-LLAQMQALGF-HP--SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 88 ~~~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
...|++++|++ .|++.....- .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 7776544321 11 24567778888888888888888888888765 45677888888888888888
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHH
Q 010236 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK---------------VIGLYR 228 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------ll~~~~ 228 (514)
++|.+.|+++.+... .+..++..+...+...|++++|.+.++++...... +...+.. .+..+.
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888877653 46778888888888888888888888888776432 2222211 122222
Q ss_pred ccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010236 229 DNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL 307 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 307 (514)
..|++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...+...|++++|+
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5566666666666665543111 35556666666666666666666666655432 223455566666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC----------cHHHHHHHHHHHHhcCCcchHH
Q 010236 308 ELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGK----------IGAIYAILVDIYGQYGRFRDPE 377 (514)
Q Consensus 308 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~ 377 (514)
..++++.+.. +.+...+..+...+.+.|++++|...++.+.+..... ...+|..+..+|...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 6666655432 2234555555555566666666666555554432111 1344555555555555555555
Q ss_pred HHHH
Q 010236 378 ECIA 381 (514)
Q Consensus 378 ~~~~ 381 (514)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 4443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=5.5e-18 Score=160.58 Aligned_cols=267 Identities=11% Similarity=0.009 Sum_probs=189.9
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.+...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355678889999999999999999999998875 5578899999999999999999999999998875 45688899999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCcChH----------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHH
Q 010236 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQE----------TYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LNSFVYGKV 223 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 223 (514)
.+|.+.|++++|.+.|+++.+... .+.. .+..+...+...|++++|.+.|+++.+.... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999887532 1122 2233466777788888888888887776432 156677777
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDV 303 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 303 (514)
...+...|++++|.+.++++.+.. +.+..+|+.+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 777777788888888887777653 4456777777777777777777777777776642 22466777777777777777
Q ss_pred HHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010236 304 AKALELFTQMQEQGFY-----------PDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~-----------p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
++|...|+++.+.... .+...+..+..++...|+.+.+.....
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7777777776643100 013445555555566666655554443
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3e-17 Score=152.73 Aligned_cols=266 Identities=9% Similarity=0.014 Sum_probs=172.5
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 355667788899999999999999999998874 4577889999999999999999999999998875 55778889999
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010236 155 RGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL--------------LD-YHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
..+...|++++|.+.++++.+... .+...+..+ .. .+...|++++|.+.++++.+.... +...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 999999999999999999987643 223333333 11 245556666666666666554322 4555
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010236 220 YGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK 299 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 299 (514)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +.+...|..+...+.+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 5556666666666666666666665543 3345555556666666666666666666555432 1244555555555666
Q ss_pred cCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 010236 300 AGDVAKALELFTQMQEQGFYP-----------DPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
.|++++|.+.++++.+..... +...+..+..++.+.|+.++|..+++
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666666665554421110 23444445555555555555554443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.3e-18 Score=160.25 Aligned_cols=239 Identities=15% Similarity=0.134 Sum_probs=69.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010236 89 KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 3355666666666552 1235556666666666666666666432 344455566666666666666666
Q ss_pred HHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 010236 169 LLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (514)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 55444432 2344555556666666666666555553 244456666666666666666666666544
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010236 249 SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITI 328 (514)
Q Consensus 249 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 328 (514)
..|..++..+.+.|++++|.+.++++. ++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 145556666666666666666666551 555666666666666666666433322 12233334445
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 010236 329 ISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ 369 (514)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 369 (514)
+..|.+.|.++++..+++...... +.....|+.+.-+|++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 555666666666666666655544 4445555555555554
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=8.2e-18 Score=159.36 Aligned_cols=232 Identities=9% Similarity=-0.048 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 010236 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (514)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 229 (514)
+..+...+.+.|++++|.+.|+++.+..+ .+..+|..+...+...|++++|+..|+++.+... .+..++..+..++..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 44444455555555555555555544332 2344455555555555555555555555544321 134444445555555
Q ss_pred cCChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 010236 230 NGMWKKAVGIVEEIREMGLS---------LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHCK 299 (514)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~ 299 (514)
.|++++|...++++.+.... .....+..+...+.+.|++++|.+.|+++.+.... ++..+|..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555554443100 01122333445555556666666666655544211 135555555555666
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHH
Q 010236 300 AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEEC 379 (514)
Q Consensus 300 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (514)
.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666555432 2234455555555555555555555555555443 22344555555555555555555555
Q ss_pred HHHHHH
Q 010236 380 IAALKL 385 (514)
Q Consensus 380 ~~~~~~ 385 (514)
|+++.+
T Consensus 304 ~~~al~ 309 (365)
T 4eqf_A 304 FLTALS 309 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=178.49 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=127.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQA---LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
-..+||++|++||+.|++++|.++|++|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||+.|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 010236 153 LLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN------SFVYGKVIG 225 (514)
Q Consensus 153 li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~ 225 (514)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998765544 344444444 3344444 455556667
Q ss_pred HHHccC
Q 010236 226 LYRDNG 231 (514)
Q Consensus 226 ~~~~~g 231 (514)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.9e-16 Score=147.33 Aligned_cols=280 Identities=10% Similarity=-0.032 Sum_probs=165.5
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 34456777888888999999999999988765 45677888888889999999999999998887643 46778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCH
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIID--TFGKYGEL 268 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~ 268 (514)
.+...|++++|.+.++++...... +...+..+...+ ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 888899999999988888876322 222222221000 00000111101 14444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010236 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544432 1234455555555555555555555555554432 223445555555555555555555555555
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010236 349 KDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQP-----------SGSMFCILANAYAQQGLCEQTVKVLQL 417 (514)
Q Consensus 349 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 417 (514)
.+.. +.+..++..+...|.+.|++++|.+.++++....... +...|..+...+...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5443 2344555555666666666666666666555443221 345666666677777777777666654
Q ss_pred h
Q 010236 418 M 418 (514)
Q Consensus 418 ~ 418 (514)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 4
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.3e-17 Score=153.51 Aligned_cols=268 Identities=13% Similarity=0.102 Sum_probs=135.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..++. .+++.+.+.++.
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 3458999999999999999999999763 47779999999999999999999988877764 466788999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|++++
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 9999999999998885 277789999999999999999999999976 489999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
|.+.++++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.+++|+.+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 99999988 278999999999999999999976665433 2444455799999999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-cCCCC------cHHHHHHHHHHHHhcCCcchHHHHH
Q 010236 316 QGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD-RGHGK------IGAIYAILVDIYGQYGRFRDPEECI 380 (514)
Q Consensus 316 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 380 (514)
.. +-....|+-+..+|++- +++...+.++.... .++++ +...|..++..|.+.++++.|....
T Consensus 236 le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 54 44567777777777665 34443333332222 22222 3557889999999999999887643
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=6.1e-16 Score=151.88 Aligned_cols=391 Identities=10% Similarity=-0.036 Sum_probs=242.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL--------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-----G 142 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g 142 (514)
....||.+...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567999999999999999999999987542 12334678999999999999999999999887652 1
Q ss_pred -C-CCChHhHHHHHHHHHhc--CChhhHHHHHHHHHHcCCCcChHhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCC
Q 010236 143 -F-NPKLRFYNILLRGFLKK--GLLGLGSRLLMVMEDMGICRNQETYEILLDY---HVNAGRLDDTWLIINEMRSKGFQL 215 (514)
Q Consensus 143 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~ 215 (514)
. .....++..+..++.+. +++++|.+.|++..+..+ .+...+..+... +...++.++|++.+++..+....
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 0 12245566665566554 468899999999887643 344455555444 34567778888888888776322
Q ss_pred ChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010236 216 NSFVYGKVIGLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWN 291 (514)
Q Consensus 216 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 291 (514)
+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|.+.|++++|...+++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 45555555544443 467788888888887764 4567788888888999999999999998887653 22455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 010236 292 SLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG 371 (514)
Q Consensus 292 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 371 (514)
.+...|...+.... ... ... ........+..+.|...++...+.. +.+..++..+...|...|
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 66555532211110 000 000 0000111223567788888877764 344566778888899999
Q ss_pred CcchHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010236 372 RFRDPEECIAALKLEGLQPSGS--MFCILAN-AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 372 ~~~~A~~~~~~~~~~~~~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
++++|.+.|++..+....+... .+..+.. .....|++++|+..|++..+. .|+...... ..+.+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHH
Confidence 9999999999888765433221 1222222 234678999999999988875 455433222 2234455
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCC-CCCCHHH
Q 010236 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSG-CTPDRKA 499 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~ 499 (514)
++++..+... .+..+|..+..+|...|++++|.+.|++..+.| ..|+..+
T Consensus 418 ~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 418 IAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 6666655433 367789999999999999999999999998753 3455543
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.4e-15 Score=149.43 Aligned_cols=370 Identities=11% Similarity=-0.051 Sum_probs=242.5
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcC----
Q 010236 110 PSSISYASLIEALASVGRTLEADAIFQEMVCF--------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMG---- 177 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---- 177 (514)
.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999987652 112345688999999999999999999998876531
Q ss_pred -C-C-cChHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHccCChHHHHHHHHHHHHcCCC
Q 010236 178 -I-C-RNQETYEILLDYHVN--AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL---YRDNGMWKKAVGIVEEIREMGLS 249 (514)
Q Consensus 178 -~-~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 249 (514)
. . ....++..+..++.. .+++++|++.|++..+.... ++..+..+..+ +...++.++|++.+++.++.+ +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 1 124556666555554 45789999999999876422 44455544444 445678888999999888764 4
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010236 250 LDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIF 325 (514)
Q Consensus 250 ~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 325 (514)
.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|+..+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 466666666655544 456788999998877653 3467788889999999999999999999988753 2245556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 010236 326 ITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQ 405 (514)
Q Consensus 326 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 405 (514)
..+..+|...+... .... ...........+..++|...+++..+.+. .+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh
Confidence 55555543221110 0000 00001111122345778888988877653 3445688889999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHH
Q 010236 406 GLCEQTVKVLQLMEPEGIEPNL--VMLNVLIN-AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVP 482 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 482 (514)
|++++|.+.|++..+....+.. ..+..+.. .....|++++|+..|++..+. .|+.......+ ..+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHH
Confidence 9999999999999876433222 12333333 345679999999999999885 34433332222 2344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010236 483 EIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 483 ~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
+++++..+. -+.+..++..+...+...|+
T Consensus 417 ~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 417 KIAKMRLSK-NGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp HHHHHHHHH-CC-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence 555555542 13355677778777776665
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=3.1e-16 Score=142.80 Aligned_cols=249 Identities=12% Similarity=0.048 Sum_probs=119.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQLNS--FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 269 (514)
....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456666666655544322 2221 2333445566666666665554433 12344555555555556666666
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010236 270 EALEVFEKMQQESIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENM 348 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 348 (514)
+|++.++++...+..| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666655544323 333444444555566666666665554 234455555555555555555555555555
Q ss_pred HhcCCCCcHH--HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 010236 349 KDRGHGKIGA--IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (514)
Q Consensus 349 ~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 426 (514)
.+.... +.. .....+..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|.+.+++..+.. +-+
T Consensus 157 ~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 157 QDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 544311 110 01112222333345555555555554442 2344445555555555555555555555544432 224
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 010236 427 LVMLNVLINAFGVAGKYKE-ALSVYHLMKD 455 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 455 (514)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4445555555555555443 3344444444
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=174.76 Aligned_cols=161 Identities=15% Similarity=0.187 Sum_probs=133.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVC---FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
..||+++|.+|++.|++++|.++|++|.+ .|+.||+.|||+||++|++.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 588999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHH
Q 010236 189 LDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD------RQIYNSIIDT 261 (514)
Q Consensus 189 i~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~ 261 (514)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. ..++..+++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999998765543 333333333 2334443 4556667777
Q ss_pred HhccC---------CHHHHHHHHHH
Q 010236 262 FGKYG---------ELVEALEVFEK 277 (514)
Q Consensus 262 ~~~~~---------~~~~A~~~~~~ 277 (514)
|.+.+ ..++-.+.|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 87665 25666666655
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=3.6e-16 Score=142.32 Aligned_cols=251 Identities=10% Similarity=-0.018 Sum_probs=134.9
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
....|++..|+..++......+.........+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666555543322111123344455666666666666654433 1233445555555666666666666
Q ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 237 VGIVEEIREMGL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 237 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++.++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666655442 22444555555666666666666666655 23555566666666666666666666666655
Q ss_pred CCCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 010236 316 QGFYPDPKIF---ITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG 392 (514)
Q Consensus 316 ~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 392 (514)
.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++..... -+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH
Confidence 32 332111 112223333456666666666666552 44555666666666666666666666666655432 245
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHhhhC
Q 010236 393 SMFCILANAYAQQGLCEQ-TVKVLQLMEPE 421 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 421 (514)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 555566666666665543 44555555543
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=7.9e-14 Score=144.75 Aligned_cols=319 Identities=11% Similarity=0.118 Sum_probs=193.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFG--FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
--...+++|...|.+.+|+++++++...+ +..+....+.++.+..+. +.....+...+.... + ..-+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 33456677777777888888887777432 112334555566655555 444444444444321 1 2335566
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
+...|.+++|..+|++... .....+.++ ...+++++|.++.++. -+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 6677777777777777420 112222222 2556677777776654 2456677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.+.|.+. .|...|..++.++.+.|++++|++.+...++.. +++...+.++.+|++.+++++...+. +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 7777553 266667777777777777777777777666543 33333334666777777666533332 1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 010236 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLN 431 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 431 (514)
.++...+..+.+.|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 223445556777777777777777777764 257777777777777777777776652 446666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 432 VLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
.+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666666666655443 22245556666666677777777777666554
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=2e-13 Score=141.85 Aligned_cols=336 Identities=12% Similarity=0.114 Sum_probs=248.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 81 NKSIQYCCKLGDIDEAMALLAQMQALGF--HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
...++.|...|.+.+|++++++..-.+- .-+....+.++....+. +..+..+...+.... ...-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHH
Confidence 4588899999999999999999984421 12345566677666666 456666655554421 1344777888
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
..|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 89999999999988631 2222333332 6788899988888652 57888899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010236 239 IVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF 318 (514)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 318 (514)
.|.+. .|...|..++..+.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 98653 377788889999999999999999998877653 33333335888899988888544332 2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010236 319 YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
.++...+..+...|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 345666777888999999999999999885 36888999999999999999999876 345788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR 474 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 474 (514)
..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-|...|++
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 88888888888888766542 3466677788889999999999999998776543 2244566666666655
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=6.6e-15 Score=142.96 Aligned_cols=379 Identities=17% Similarity=0.108 Sum_probs=249.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT---LEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999998876 444555666677778888 8999999998853 5566777777565
Q ss_pred hcC-----ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 010236 159 KKG-----LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD---DTWLIINEMRSKGFQLNSFVYGKVIGLYRDN 230 (514)
Q Consensus 159 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 230 (514)
..+ +.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 77899999999998764 337777777777765543 4455555555444 456677777888887
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCh
Q 010236 231 GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG---ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA----GDV 303 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~ 303 (514)
+.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.|. ++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 755555544333332212223337888888999999 99999999999998874 4555556677777554 689
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-----Ccch
Q 010236 304 AKALELFTQMQEQGFYPDPKIFITIISC-L--GELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG-----RFRD 375 (514)
Q Consensus 304 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 375 (514)
++|+.+|++.. .| ++..+..+... + ...++.++|...|++..+.+ +...+..+..+|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 44555556555 3 56889999999999999877 5677777888887 45 8999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 010236 376 PEECIAALKLEGLQPSGSMFCILANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEAL 447 (514)
Q Consensus 376 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 447 (514)
|.++|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999877 3 355677777777766 349999999999998876 33445566666664 46899999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.+|+...+.|.. +.......+......++.++|.++.++..+
T Consensus 379 ~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999887753 322222222222334455667777666554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=7.9e-15 Score=127.50 Aligned_cols=198 Identities=14% Similarity=0.018 Sum_probs=130.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45567777888888888888888888887764 4567778888888888888888888888888765 455677777777
Q ss_pred HHHhc-----------CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010236 156 GFLKK-----------GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 156 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
++.+. |++++|...|++..+..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 777777777777766543 345566666667777777777777777766665 4566666666
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
.++...|++++|+..+++..+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66667777777777777666653 3355666666666666666666666665543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-14 Score=129.77 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=118.2
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 010236 217 SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI--RPD----IVTW 290 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~ 290 (514)
...+..+...+...|++++|...++++.+.. .+...+..+...+...|++++|.+.+++..+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455556666666666666666666666655 4556666666666666666666666666554311 111 3555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 010236 291 NSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY 370 (514)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 370 (514)
..+...+...|++++|+..|++..+. .|+. ..+.+.|++++|...++.+.+.. +.+...+..+.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~------ 146 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEG------ 146 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHH------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHH------
Confidence 56666666666666666666666552 2332 22333444555555555554432 22333444444
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010236 371 GRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVY 450 (514)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 450 (514)
..+...|++++|.+.++++.+.. +.+...|..+..++...|++++|.+.|
T Consensus 147 -----------------------------~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 147 -----------------------------KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -----------------------------HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------HHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44444555555555555444432 223444555555555555555555555
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 451 HLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 451 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
+++.+.... +...|..+..++...|++++|.+.+++..+
T Consensus 197 ~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555443211 344455555555555555555555555543
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.3e-14 Score=128.12 Aligned_cols=224 Identities=13% Similarity=0.026 Sum_probs=154.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----hHhHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (514)
..|..+...+.+.|++++|+..|+++.+.. .+...+..+...+...|++++|.+.++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456777888888888888888888888776 6777888888888888888888888888776431 111 46777
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.+...+.+.|++++|.+.|++..+.. |+. ..+...|++++|...++++..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 77788888888888888888777643 332 334555667777777777766521 13455666666777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++|...++++.+.. +.+..++..+...+.+.|++++|.+.|++..+.. +.+...|..+...+.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777776653 3356666667777777777777777777666542 2245666666666777777777777766
Q ss_pred HHHH
Q 010236 312 QMQE 315 (514)
Q Consensus 312 ~m~~ 315 (514)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.7e-14 Score=125.36 Aligned_cols=199 Identities=16% Similarity=0.085 Sum_probs=122.3
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHH
Q 010236 109 HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEIL 188 (514)
Q Consensus 109 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 188 (514)
+++...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..+ .+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 4566677777888888888888888888887764 45667777788888888888888888888777553 356677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010236 189 LDYHVNA-----------GRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 189 i~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
...+... |++++|+..|++..+.... +...+..+..++...|++++|+..|++.++.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 6666666666666655322 44555566666666666666666666666654 45566666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666655542 124455555666666666666666665544
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=6.1e-13 Score=120.17 Aligned_cols=222 Identities=11% Similarity=-0.017 Sum_probs=146.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALAS----VGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
+.++..+...+.+.|++++|++.|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445666777777777888888888777763 355667777777777 777777777777777754 5666777
Q ss_pred HHHHHHh----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010236 153 LLRGFLK----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN----AGRLDDTWLIINEMRSKGFQLNSFVYGKVI 224 (514)
Q Consensus 153 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 224 (514)
+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 7777777 777777777777777653 55666666677766 677777777777766654 445555566
Q ss_pred HHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010236 225 GLYRD----NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRW 296 (514)
Q Consensus 225 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 296 (514)
..+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 66665 666666666666666543 44555566666666 666666666666666543 24455555556
Q ss_pred HHh----cCChHHHHHHHHHHHHC
Q 010236 297 HCK----AGDVAKALELFTQMQEQ 316 (514)
Q Consensus 297 ~~~----~g~~~~A~~~~~~m~~~ 316 (514)
|.+ .+++++|.+.|++..+.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHc
Confidence 665 66666666666666554
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.4e-12 Score=117.67 Aligned_cols=224 Identities=13% Similarity=0.018 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFI 326 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 326 (514)
+...+..+...|...|++++|.+.|++..+. -+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344455555555555556666555555552 234455555555555 566666666666655543 445555
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCHHHHHHH
Q 010236 327 TIISCLGE----LGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQ----YGRFRDPEECIAALKLEGLQPSGSMFCIL 398 (514)
Q Consensus 327 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 398 (514)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 666666666666665543 45556666666666 666677777776666654 34555666
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010236 399 ANAYAQ----QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 399 i~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777777653 45666777777777 788888888888777654 2556667777
Q ss_pred HHHc----CCCcchHHHHHHHHHhCC
Q 010236 471 AFIR----AKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 471 ~~~~----~g~~~~a~~~~~~m~~~g 492 (514)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 778888888888877743
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=5.1e-14 Score=136.72 Aligned_cols=344 Identities=10% Similarity=0.021 Sum_probs=236.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL---GLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788999999999999998876 334455566677778888 8999999998863 5566777777555
Q ss_pred hcC-----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010236 194 NAG-----RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW---KKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY 265 (514)
Q Consensus 194 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (514)
..+ ++++|+..|++..+.|. ...+..|...|...+.. .++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 78999999999998764 34677777777765543 34555666655554 345566777777777
Q ss_pred CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---
Q 010236 266 GE----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG---DVAKALELFTQMQEQGFYPDPKIFITIISCLGEL--- 335 (514)
Q Consensus 266 ~~----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 335 (514)
+. .+++..+++..... +...+..+...|.+.| +.++|+++|++..+.|. ++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 74 44555555554433 3337888888999999 99999999999998874 4555556666777654
Q ss_pred -CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-H--HhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 010236 336 -GKWDVIKKNFENMKDRGHGKIGAIYAILVDI-Y--GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG----- 406 (514)
Q Consensus 336 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 406 (514)
++.++|...|+... . .+...+..+... | ...+++++|.++|++..+.| +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 78999999999988 3 356667777776 4 56899999999999999876 5667777777776 55
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCCc
Q 010236 407 LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR----AKKF 478 (514)
Q Consensus 407 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~ 478 (514)
++++|.+.|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999988 44 66777888887776 3499999999999988764 3445666666664 4578
Q ss_pred chHHHHHHHHHhCCC
Q 010236 479 HKVPEIYKQMESSGC 493 (514)
Q Consensus 479 ~~a~~~~~~m~~~g~ 493 (514)
++|..++++..+.|.
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 899999999888764
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=1.8e-13 Score=128.80 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=192.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
...|+.+...+.+.|++++|++.|+++.+.. +-+...|+.+..++...|+ +++|+..|+++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999999875 4567889999999999997 999999999999876 567889999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD-NGMWK 234 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~ 234 (514)
++.+.|++++|+..|+++.+... .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998765 57889999999999999999999999999987544 67888888888888 56657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 010236 235 KA-----VGIVEEIREMGLSLDRQIYNSIIDTFGKYG--ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAG------ 301 (514)
Q Consensus 235 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 301 (514)
+| ++.+++.++.. +.+...|+.+...+.+.| ++++|++.+.++ +. .+.+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47888888764 446778888888888877 588888888887 32 3346677788888887764
Q ss_pred ---ChHHHHHHHHHH-HH
Q 010236 302 ---DVAKALELFTQM-QE 315 (514)
Q Consensus 302 ---~~~~A~~~~~~m-~~ 315 (514)
..++|+++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 257888888888 54
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=2.2e-13 Score=121.41 Aligned_cols=201 Identities=10% Similarity=-0.018 Sum_probs=134.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667778888888889999998888887764 4467778888888888888888888888887764 3456677777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777778888877777776622223 345666666667777777777777766665432 234555555566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 236 AVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
|...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666655542 234455555555555556666666655555543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.3e-13 Score=117.78 Aligned_cols=200 Identities=8% Similarity=-0.108 Sum_probs=111.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456666667777777777777777766653 3345666666667777777777777777666543 3345566666666
Q ss_pred HHhc-CChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 010236 157 FLKK-GLLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK 234 (514)
Q Consensus 157 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 234 (514)
+... |++++|.+.++++.+.+..| +...|..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666665521112 234555555555566666666666655554421 13444444555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 235 KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555555443211234444444444444555555555544443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=1.3e-13 Score=124.53 Aligned_cols=234 Identities=13% Similarity=0.029 Sum_probs=154.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--LRFYNILLRG 156 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~ 156 (514)
.+......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++++.+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677788888888888888887764 34455778888888888888888888888877331121 2237777788
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
+...|++++|.+.|++..+... .+...|..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777543 355677777777788888888888777776652 22455555555234444577777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHH
Q 010236 237 VGIVEEIREMGLSLDRQIYNSIIDTFGKYGE---LVEALEVFEKMQQES-IRPD------IVTWNSLIRWHCKAGDVAKA 306 (514)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A 306 (514)
.+.++++.+.. +.+...+..+...+...++ +++|...+++..+.. ..|+ ...|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777653 3345566666666666665 556666666654321 0122 13555566666667777777
Q ss_pred HHHHHHHHHC
Q 010236 307 LELFTQMQEQ 316 (514)
Q Consensus 307 ~~~~~~m~~~ 316 (514)
.+.+++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777766653
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=6.5e-14 Score=124.03 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=131.8
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
.......|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 96 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYG 96 (243)
T ss_dssp -----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHH
Confidence 44556678888889999999999999999998764 4567888888999999999999999999988764 456778888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM 232 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 232 (514)
+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCC
Confidence 88888888888888888888877643 4566777777777788888888888777766532 245566666666666677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
+++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766666543 334555666666666666666666666665543
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=5.4e-13 Score=118.88 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=158.0
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 4567777888889999999999999988764 45678888888999999999999999998887653 467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
+...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888999999999988887733333 45667777788888888888888888887764 3457777788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010236 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888877653 245666777777788888888888888887764
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=6.6e-13 Score=115.84 Aligned_cols=202 Identities=10% Similarity=-0.076 Sum_probs=144.8
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45667777888888888888888888887754 44567778888888888888888888888776543 45667777778
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 010236 191 YHVNA-GRLDDTWLIINEMRSKGFQLN-SFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 191 ~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 268 (514)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888776322232 4566667777777788888887777777653 33566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 269 VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 269 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
++|.+.+++..+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766543213556666666667777777777777777664
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.4e-14 Score=128.43 Aligned_cols=247 Identities=13% Similarity=-0.027 Sum_probs=183.2
Q ss_pred hcCCHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhh
Q 010236 89 KLGDIDEAMALLAQMQALGF---HPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGL 165 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 165 (514)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34889999999999988632 1246678889999999999999999999999875 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010236 166 GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 166 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
|.+.|++..+... .+...|..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999988654 46788999999999999999999999999876 34444444455556777899999999987776
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010236 246 MGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIR---PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP 322 (514)
Q Consensus 246 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 322 (514)
.. +++...+. ++..+...++.++|.+.+++....... .+...|..+...|.+.|++++|...|++..+. .|+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 53 33433443 666777788888888888887654211 01466777888888888888888888888764 3422
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 010236 323 KIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 122234555666666665544
No 53
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=2.2e-11 Score=122.26 Aligned_cols=423 Identities=10% Similarity=0.061 Sum_probs=294.0
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCChHhH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR---TLEADAIFQEMVCFG-FNPKLRFY 150 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~~~~~ 150 (514)
.|...|..++..+.+.++++.+..+|+++... ++.....|...+..-.+.++ ++.+.++|++.+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46778999999999999999999999999887 36677889999998888898 999999999998754 13888899
Q ss_pred HHHHHHHHhcCCh--------hhHHHHHHHHHH-cCC-CcC-hHhHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 010236 151 NILLRGFLKKGLL--------GLGSRLLMVMED-MGI-CRN-QETYEILLDYHVN---------AGRLDDTWLIINEMRS 210 (514)
Q Consensus 151 ~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 210 (514)
..-+.-..+.++. +...++|+.... .|. .++ ...|...+..... .++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665554 334578887654 355 443 5688888876543 3457788899999885
Q ss_pred cCCCCChhhHHHHHHHHHc-------------cCChHHHHHHHHHHHHc--CC----C-----------C-----C---H
Q 010236 211 KGFQLNSFVYGKVIGLYRD-------------NGMWKKAVGIVEEIREM--GL----S-----------L-----D---R 252 (514)
Q Consensus 211 ~g~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~--~~----~-----------~-----~---~ 252 (514)
.....-..+|......-.. ..+++.|...+.++... ++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 3211112333222211111 11233444555443221 11 1 1 1 2
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCCHHH
Q 010236 253 QIYNSIIDTFGKYG-------ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKAL-ELFTQMQEQGFYPDPKI 324 (514)
Q Consensus 253 ~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~~ 324 (514)
..|...+..--..+ ..+.+..+|++.... .+-+...|...+.-+.+.|+.++|. ++|++.... .+.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 45555555433322 123456678887664 3347788888888888899999997 999999874 3446666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcC----------CCC-----------cHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010236 325 FITIISCLGELGKWDVIKKNFENMKDRG----------HGK-----------IGAIYAILVDIYGQYGRFRDPEECIAAL 383 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 383 (514)
+...+....+.|+++.|..+|+.+++.. .+. ...+|...+....+.|..+.|..+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7778888889999999999999988641 111 2346888888888889999999999999
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-
Q 010236 384 KLE-GLQPSGSMFCILANAYAQQ-GLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP- 460 (514)
Q Consensus 384 ~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 460 (514)
.+. +. .....|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.+.|..+|++.......+
T Consensus 461 ~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 22 2223443333333344 4589999999999886 45567778888888889999999999999998764422
Q ss_pred -CHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHH
Q 010236 461 -DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQ 504 (514)
Q Consensus 461 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 504 (514)
....|...+..-.+.|+.+.+.++.+++.+. .|+......+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 3457888888888999999999999999984 45544444443
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=4.3e-13 Score=126.20 Aligned_cols=248 Identities=9% Similarity=0.067 Sum_probs=192.3
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL-LGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
...|..+...+...|++++|++.++++++.. +.+..+|+.+..++.+.|+ +++|+..|+++.+... .+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4567788888899999999999999999875 5567889999999999996 9999999999998765 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHH
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-YGELV 269 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~ 269 (514)
.+...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.+ +.+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999887543 67888888889999999999999999998875 4578888888888888 55546
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------
Q 010236 270 EA-----LEVFEKMQQESIRPDIVTWNSLIRWHCKAG--DVAKALELFTQMQEQGFYPDPKIFITIISCLGELG------ 336 (514)
Q Consensus 270 ~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 336 (514)
+| ++.|++..... +-+...|+.+...+.+.| ++++|++.+.++ +. ...+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 47777776643 225677888888888777 578888888877 32 3345677777777777763
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHH
Q 010236 337 ---KWDVIKKNFENM-KDRGHGKIGAIYAILVDIY 367 (514)
Q Consensus 337 ---~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~ 367 (514)
..++|.++++++ .+.+ +.....|..+...+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888887 5543 33445555554443
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=9.6e-13 Score=118.69 Aligned_cols=192 Identities=10% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccC
Q 010236 189 LDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL--DRQIYNSIIDTFGKYG 266 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~ 266 (514)
...+...|++++|+..|++..+.... +...+..+...+...|++++|++.++++.+....+ ....|..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33344444444444444444433211 22233444444444444444444444444321001 1222444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010236 267 ELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 267 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
++++|.+.|++..+... .+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|...++
T Consensus 89 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443211 123344444444445555555555554444331 1123333333312222234445555444
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCC---cchHHHHHHHHH
Q 010236 347 NMKDRGHGKIGAIYAILVDIYGQYGR---FRDPEECIAALK 384 (514)
Q Consensus 347 ~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~ 384 (514)
.+.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 444432 2223334444444444444 444554444443
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=2.6e-13 Score=120.05 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYG 368 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 368 (514)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444445555555555555554421 2234444444555555555555555555554443 234455555555556
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
..|++++|.+.++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666555432 244556666666666666666666666665542 3355666666677777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 449 VYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|+++.+... .+..++..+..++...|++++|.+.++++.+
T Consensus 181 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 181 QFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 7776665432 2455666677777777777777777777766
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=1.5e-13 Score=124.08 Aligned_cols=118 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010236 196 GRLDDTWLIINEMRSKGFQ---LNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEAL 272 (514)
Q Consensus 196 g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 272 (514)
|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555554443210 123334444444555555555555555544432 223444555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 273 EVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 273 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
+.|++..+.. +.+...|..+...|.+.|++++|...++++.+
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555544431 11334444555555555555555555555544
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=2.2e-13 Score=130.58 Aligned_cols=276 Identities=17% Similarity=0.071 Sum_probs=182.0
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFNP 145 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~ 145 (514)
+.....+......+.+.|++++|+..|+++.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3455567778888899999999999999998874 233 356888889999999999999999887542 2111
Q ss_pred -ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-c----ChHhHHHHHHHHHhcCC--------------------HH
Q 010236 146 -KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGR--------------------LD 199 (514)
Q Consensus 146 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~ 199 (514)
...++..+...+...|++++|...+++..+.... + ...++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2456778888889999999999988887653110 1 13477778888888888 88
Q ss_pred HHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHH
Q 010236 200 DTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLD----RQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 200 ~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~~~ 269 (514)
+|.+.+.+.... +..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888887776442 1111 134566667777777888888877777654310 011 235666777777777777
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHH
Q 010236 270 EALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWD 339 (514)
Q Consensus 270 ~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~ 339 (514)
+|...+++..+... .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 77777776553210 011 34566666677777777777777776653210 011 334555566666666777
Q ss_pred HHHHHHHHHHh
Q 010236 340 VIKKNFENMKD 350 (514)
Q Consensus 340 ~a~~~~~~~~~ 350 (514)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4e-13 Score=128.81 Aligned_cols=302 Identities=14% Similarity=0.041 Sum_probs=171.1
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010236 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRN---QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKV 223 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 223 (514)
...+......+.+.|++++|...|++..+.+.... ...|..+...+...|++++|...+++.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------
Confidence 34444455555555666666666655555422110 2344455555555555555555555543210
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREMGLS-LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWH 297 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~ 297 (514)
...+.. ....++..+...|...|++++|...+++..+... .++ ..++..+...|
T Consensus 78 --------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 78 --------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp --------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred --------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 000000 1123444445555555555555555554432100 001 23455556666
Q ss_pred HhcCC--------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010236 298 CKAGD--------------------VAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 298 ~~~g~--------------------~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
...|+ +++|+..+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666 66666666654421 1111 12345556666777777777777777665421
Q ss_pred C-----CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 010236 353 H-----GKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCILANAYAQQGLCEQTVKVLQLMEPE- 421 (514)
Q Consensus 353 ~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 421 (514)
. .....++..+...|...|++++|...+++....... ++ ..++..+...|...|++++|.+.+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111236777777888888888888888776543111 11 456777888888999999999988877653
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCCcc
Q 010236 422 ---GIEP-NLVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISP-DLVTYSTLMKAFIRAKKFH 479 (514)
Q Consensus 422 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 479 (514)
+-.+ ...++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1111 1457788889999999999999999987532 2222 2446777888888877763
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=6e-13 Score=127.93 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=145.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCC
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----ISYASLIEALASVGRTLEADAIFQEMVCF----G-FNPK 146 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~ 146 (514)
....+..+...+.+.|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34455667778899999999999999998874 2233 46888888999999999999999987653 1 1223
Q ss_pred hHhHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCcChHhHHHHHHHHHhcCC-----------------HHHHHHH
Q 010236 147 LRFYNILLRGFLKKGLLGLGSRLLMVMEDMG-----ICRNQETYEILLDYHVNAGR-----------------LDDTWLI 204 (514)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 204 (514)
..++..+...|...|++++|.+.+++..+.. ......++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4667788888888999999988888776531 11224467777777777888 7777777
Q ss_pred HHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHH
Q 010236 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 205 ~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
+++..+. +..+ ...++..+...+...|++++|.+.+++..+.... .+ ...+..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6665432 1111 1234555555666666666666666655432100 01 12444555555555555555555
Q ss_pred HHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 275 FEKMQQESI--R---PDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 275 ~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
+++..+... . ....++..+...|...|++++|...+++..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 554432100 0 012334444445555555555555554443
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=2.5e-11 Score=111.61 Aligned_cols=235 Identities=14% Similarity=0.084 Sum_probs=169.6
Q ss_pred chHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCCh-------HHHHHHH
Q 010236 78 NSYNKSIQYCCKL----GDI----DEAMALLAQMQALGFHPSSISYASLIEALAS-------VGRT-------LEADAIF 135 (514)
Q Consensus 78 ~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~ 135 (514)
..|...+..-.+. ++. ++|+.+|+++.... +.+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3566666654443 233 68889999988763 5577788888877763 4775 8899999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010236 136 QEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQE-TYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (514)
Q Consensus 136 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 214 (514)
++..+.-.+.+...|..++..+.+.|++++|.++|++..+..+ .+.. .|..++..+.+.|++++|..+|++..+...
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p- 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR- 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 9988731144566888888888899999999999999887432 1233 788888888888999999999988887642
Q ss_pred CChhhHHHHHHHHH-ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHH
Q 010236 215 LNSFVYGKVIGLYR-DNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRP--DIVTW 290 (514)
Q Consensus 215 ~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p--~~~~~ 290 (514)
.+...|........ ..|++++|.++|+..++.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 23444443333322 3688888888888887653 3467778888888888888888888888887752 343 45677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 010236 291 NSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 291 ~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
..++....+.|+.++|..+++++.+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777888888888888887764
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=9.9e-13 Score=126.41 Aligned_cols=201 Identities=16% Similarity=0.120 Sum_probs=128.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCcChH
Q 010236 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----G-ICRNQE 183 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 183 (514)
..+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...|...|++++|.+.|++..+. + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345556778889999999999999999874 2233 47888889999999999999999887653 1 112456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCChhhHHHHHHHHHccCC-----------------hHHHHHHHH
Q 010236 184 TYEILLDYHVNAGRLDDTWLIINEMRSKG----F-QLNSFVYGKVIGLYRDNGM-----------------WKKAVGIVE 241 (514)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~ 241 (514)
.+..+...|...|++++|...+++..... - .....++..+...+...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888888889999999998888875531 1 1123456666677777777 666666666
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 242 EIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 242 ~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
+..+. +. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 10 11123455555566666666666666655543200 001 1244455555555555555555555
Q ss_pred HHH
Q 010236 312 QMQ 314 (514)
Q Consensus 312 ~m~ 314 (514)
+..
T Consensus 288 ~al 290 (411)
T 4a1s_A 288 RTL 290 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=3.4e-10 Score=113.74 Aligned_cols=412 Identities=10% Similarity=0.092 Sum_probs=279.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhhHHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL---LGLGSR 168 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~ 168 (514)
...+.+..|++....+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3445555666666554 678999999999999999999999999999986 46778889988888888888 999999
Q ss_pred HHHHHHHcC-CCcChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-hhhHHHHHHHHHc-------
Q 010236 169 LLMVMEDMG-ICRNQETYEILLDYHVNAGRL--------DDTWLIINEMRS-KGF-QLN-SFVYGKVIGLYRD------- 229 (514)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~~-~~~~~~ll~~~~~------- 229 (514)
+|++..... ..|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998764 237888999988877665543 334477777654 465 554 4677777765432
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHh----------ccCCHHHHHHHHHHHHHC--CCC--------
Q 010236 230 --NGMWKKAVGIVEEIREMGLSLDRQIYNSIID---TFG----------KYGELVEALEVFEKMQQE--SIR-------- 284 (514)
Q Consensus 230 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~----------~~~~~~~A~~~~~~m~~~--~~~-------- 284 (514)
.++++.+..+|+.++......-..+|..... .+. ...+++.|...+.++... ++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 3456788899999886422212233322211 110 012344455555543211 110
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010236 285 -------P-----D---IVTWNSLIRWHCKAG-------DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIK 342 (514)
Q Consensus 285 -------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 342 (514)
| + ...|...+.---..+ ..+.+..+|++.... ++-.+..|...+.-+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 1 234555554332222 123456778888764 3447778888888888889998996
Q ss_pred -HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcC---------CCCC------------HHHHHHHHH
Q 010236 343 -KNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEG---------LQPS------------GSMFCILAN 400 (514)
Q Consensus 343 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~ 400 (514)
.+++...... +.+...|-..+....+.|++++|.++|+.+.... -.|+ ..+|...+.
T Consensus 364 r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 9999998753 5667778888999999999999999999987641 0132 346888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc
Q 010236 401 AYAQQGLCEQTVKVLQLMEPE-GIEPNLVMLNVLINAFGVA-GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (514)
...+.|..+.|..+|..+.+. + ......|...+..-.+. ++.+.|.++|+...+. .+-+...|...+......|+.
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 888889999999999999875 2 22333443333333344 4589999999999875 334667788888888889999
Q ss_pred chHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010236 479 HKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 479 ~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
+.|..+|++..... |+......+...+..++
T Consensus 521 ~~AR~lferal~~~--~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 521 SQVKSLFESSIDKI--SDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHHHHTTTS--SSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHH
Confidence 99999999998753 32222334444444443
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.2e-12 Score=121.65 Aligned_cols=199 Identities=16% Similarity=0.110 Sum_probs=119.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHh
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCF----GFN-PKLRF 149 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~ 149 (514)
.+......+.+.|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44556677788899999999999988763 223 356778888888999999999988876542 111 22456
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC-cC----hHhHHHHHHHHHhcCC--------------------HHHHHHH
Q 010236 150 YNILLRGFLKKGLLGLGSRLLMVMEDMGIC-RN----QETYEILLDYHVNAGR--------------------LDDTWLI 204 (514)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 204 (514)
+..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777778888888888888888776543110 11 3366667777777777 6777666
Q ss_pred HHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHhccCCHHHHHHH
Q 010236 205 INEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-----SLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 205 ~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
+++.... +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6655332 1011 122444455555555666666655555443210 00112344444444555555555555
Q ss_pred HHHH
Q 010236 275 FEKM 278 (514)
Q Consensus 275 ~~~m 278 (514)
+++.
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=1.6e-12 Score=120.83 Aligned_cols=276 Identities=14% Similarity=0.071 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-cChHh
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQET 184 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~ 184 (514)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44555677788899999999999988764 223 356778888888899999998888876542 111 22456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCC--------------------hHHHHHH
Q 010236 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LN----SFVYGKVIGLYRDNGM--------------------WKKAVGI 239 (514)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 239 (514)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 777777888888888888888776543111 11 2355666666667777 6666666
Q ss_pred HHHHHHc----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHH
Q 010236 240 VEEIREM----GL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 240 ~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
+++..+. +. .....++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6654431 10 11123445555555556666666655555432100 001 12344444555555555555555
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 010236 310 FTQMQEQGF-YPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGL 388 (514)
Q Consensus 310 ~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 388 (514)
+++..+... ..+. .....++..+...|...|++++|...+++......
T Consensus 246 ~~~al~~~~~~~~~-------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLARQLKDR-------------------------------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcch-------------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 554432100 0010 00123444455555555555555555555433210
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 010236 389 -----QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPE 421 (514)
Q Consensus 389 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 421 (514)
.....++..+...|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 001234555666666777777777777666553
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=1e-11 Score=118.11 Aligned_cols=226 Identities=11% Similarity=-0.041 Sum_probs=117.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCH--hhHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCChHh
Q 010236 87 CCKLGDIDEAMALLAQMQAL--GFHPSS--ISYASLIEA--LASVGRTLEAD-----------AIFQEMVCFGFNPKLRF 149 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~--~~~~~~--~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~~~~ 149 (514)
+.+.+++++|..+++++.+. .+..|. ..|-.++.. ..-.++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 35789999999999998664 222333 333333322 11223333444 5555554321 11111
Q ss_pred ------HHHHHHHHHhcCChhhHHHHHHHHHHc----CCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--
Q 010236 150 ------YNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-L-- 215 (514)
Q Consensus 150 ------~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-- 215 (514)
+-.....+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|...+.+..+.-.. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112445566677777777777777653 1111 2346666677777777777777777666542110 0
Q ss_pred ---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CC
Q 010236 216 ---NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLS-LD----RQIYNSIIDTFGKYGELVEALEVFEKMQQ-----ES 282 (514)
Q Consensus 216 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~ 282 (514)
...+++.+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|.+.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 1234555556666666666666666655432100 01 12455555555556666666655555543 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 283 IRPDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 283 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.+....++..+...|.+.|++++|...+++..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11123445555555555555555555555544
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=9.4e-12 Score=104.90 Aligned_cols=167 Identities=14% Similarity=0.047 Sum_probs=105.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
++..|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34456677777777777777777777776654 3456667777777777777777777777766653 344555666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKK 235 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 235 (514)
.+...++++.|.+.+++..+... .+...+..+...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 66666777777776666665433 34555666666666666666666666666554322 45555556666666666666
Q ss_pred HHHHHHHHHHc
Q 010236 236 AVGIVEEIREM 246 (514)
Q Consensus 236 a~~~~~~~~~~ 246 (514)
|++.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666665553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=9.2e-12 Score=118.44 Aligned_cols=228 Identities=7% Similarity=0.007 Sum_probs=107.6
Q ss_pred HHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--CC----CCHHHHHHH
Q 010236 225 GLYRDNGMWKKAVGIVEEIREM----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQES--IR----PDIVTWNSL 293 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~----p~~~~~~~l 293 (514)
..+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.. .. ....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555432 1001 12345555555555666666655555544310 00 012345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc----CC-CCcHHHHHHH
Q 010236 294 IRWHCKAGDVAKALELFTQMQEQGF-YPD----PKIFITIISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAIL 363 (514)
Q Consensus 294 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 363 (514)
...|...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 5666666666666666665543200 011 124445555555666666666665555441 11 2234455555
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010236 364 VDIYGQYGRFRDPEECIAALKLEG----LQPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
...|.+.|++++|...+++..... -......+..+...+...|+ +++|..++++... .+.....+..+...
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHH
Confidence 555555666666655555543321 00011123334444555555 4444444444411 01122344455555
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 010236 437 FGVAGKYKEALSVYHLMK 454 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~ 454 (514)
|...|++++|.+.+++..
T Consensus 349 y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 556666666665555543
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.8e-11 Score=103.13 Aligned_cols=167 Identities=16% Similarity=0.090 Sum_probs=102.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...|..+...+...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 45566667777777777777777777766654 34556666666667777777777776666665433 34455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE 270 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 270 (514)
.+...++++.|...+.+....... +...+..+...+.+.|++++|++.|++..+.. +.+..+|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666666666666666666554222 44555555666666666666666666665543 3345555666666666666666
Q ss_pred HHHHHHHHHHC
Q 010236 271 ALEVFEKMQQE 281 (514)
Q Consensus 271 A~~~~~~m~~~ 281 (514)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666655543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=1.3e-11 Score=120.60 Aligned_cols=214 Identities=12% Similarity=0.006 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010236 233 WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGEL-VEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFT 311 (514)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 311 (514)
++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344445555444332 33556666666666666666 66666666665542 1245566666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc--------CCcc
Q 010236 312 QMQEQGFYPDPKIFITIISCLGEL---------GKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQY--------GRFR 374 (514)
Q Consensus 312 ~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~ 374 (514)
+..+. .|+...+..+...+... |++++|...++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66653 35556666666666666 67777777777766654 34556666666666666 7777
Q ss_pred hHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010236 375 DPEECIAALKLEGLQ--PSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHL 452 (514)
Q Consensus 375 ~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 452 (514)
+|.+.|++..+.... .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777665321 356677777777777777777777777776653 33556677777777777777777765543
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=5.1e-12 Score=123.41 Aligned_cols=215 Identities=11% Similarity=0.002 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010236 128 TLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL-GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIIN 206 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 206 (514)
++++++.++...... +.+...+..+...+...|++ ++|.+.|++..+... .+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 33556666666666666666 666666666665433 345566666666666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CCHH
Q 010236 207 EMRSKGFQLNSFVYGKVIGLYRDN---------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY--------GELV 269 (514)
Q Consensus 207 ~m~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~ 269 (514)
+..+.. |+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666553 4455666666666666 66677777776666653 33566666666666666 6677
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010236 270 EALEVFEKMQQESIR--PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFEN 347 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 347 (514)
+|++.|++..+.... .+...|..+...|...|++++|++.|++..+.. +-+...+..+...+...|++++|...+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777666654210 256666666677777777777777777666542 22445566666666666666666655444
Q ss_pred H
Q 010236 348 M 348 (514)
Q Consensus 348 ~ 348 (514)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=9.9e-11 Score=107.53 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=147.7
Q ss_pred hhhHHHHHHHHHcc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCCH-------HHHHHH
Q 010236 217 SFVYGKVIGLYRDN----GMW----KKAVGIVEEIREMGLSLDRQIYNSIIDTFGK-------YGEL-------VEALEV 274 (514)
Q Consensus 217 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~ 274 (514)
...|...+....+. ++. ++|..+|++++... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555566554443 232 56777777777653 4566777777766653 4664 777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 010236 275 FEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD-PK-IFITIISCLGELGKWDVIKKNFENMKDRG 352 (514)
Q Consensus 275 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 352 (514)
|++..+.-.+.+...|..++..+.+.|++++|..+|++..+. .|+ .. .+..+...+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776211224556777777777777777777777777763 332 22 66667777777777777777777777654
Q ss_pred CCCcHHHHHHHHHHHH-hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--CHH
Q 010236 353 HGKIGAIYAILVDIYG-QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEG-IEP--NLV 428 (514)
Q Consensus 353 ~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~ 428 (514)
. .+...|........ ..|+.++|..+|++..+... -+...|..++..+.+.|++++|..+|++..... ++| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 2 33344433333322 25777777777777665532 255666677777777777777777777776642 333 355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.|..++....+.|+.++|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777777777777776654
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=1.1e-10 Score=110.72 Aligned_cols=241 Identities=13% Similarity=-0.026 Sum_probs=116.1
Q ss_pred ccCcchHHHHHHHH--HhcCCHHHHHHHHHHHHHCC--CCCC--HhhHHHHHHH--HHhcCChHHHH---------HHHH
Q 010236 74 EFSGNSYNKSIQYC--CKLGDIDEAMALLAQMQALG--FHPS--SISYASLIEA--LASVGRTLEAD---------AIFQ 136 (514)
Q Consensus 74 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~--~~~~--~~~~~~li~~--~~~~g~~~~A~---------~~~~ 136 (514)
.|+...-+.+-..| .+.+++++|.++++++.+.. +..| ...|-.++.. ..-.+.+..+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444455555566 78899999999999876531 2223 2233333332 11112222222 4444
Q ss_pred HHHHcCCCCCh----HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-c----ChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010236 137 EMVCFGFNPKL----RFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC-R----NQETYEILLDYHVNAGRLDDTWLIINE 207 (514)
Q Consensus 137 ~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 207 (514)
.+.....+.+. ..+-.....+...|++++|...|++..+.... + ...++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44321100010 11222334445667777777777666543100 1 234555666666666666666666666
Q ss_pred HHHcCC-----CC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010236 208 MRSKGF-----QL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREM----GLS-LDRQIYNSIIDTFGKYGELVEALEVFE 276 (514)
Q Consensus 208 m~~~g~-----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~ 276 (514)
..+... .+ ...+++.+...|...|++++|.+.+++..+. +.+ ....+++.+...|...|++++|.+.|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 543210 10 1234445555566666666666666555432 100 112344455555555555555555555
Q ss_pred HHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 277 KMQQ-----ESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 277 ~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
+..+ ... ....++..+...+.+.|++++|...+++..+
T Consensus 247 ~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 247 KAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5443 211 1234444555555555555555555555443
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.6e-11 Score=112.92 Aligned_cols=239 Identities=11% Similarity=0.006 Sum_probs=172.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------G 142 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g 142 (514)
+..+|..+...+...|++++|+.+|+++.+. ..+....++..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999999998873 22334567888999999999999999999998764 2
Q ss_pred C-CCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc------CC-CcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 010236 143 F-NPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------GI-CRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--- 211 (514)
Q Consensus 143 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 211 (514)
- +....++..+...|...|++++|.+.|++..+. +. ......+..+...+...|++++|.+.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 234567888999999999999999999998764 21 234567888999999999999999999998764
Q ss_pred ---CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC-------CCCC-------HHHHHHHHHHHhccCCHHHHHH
Q 010236 212 ---GFQL-NSFVYGKVIGLYRDNGMWKKAVGIVEEIREMG-------LSLD-------RQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 212 ---g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~li~~~~~~~~~~~A~~ 273 (514)
+..| ...++..+...+...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 34567888899999999999999999988631 1111 1122223333444455555666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 274 VFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 274 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
.+....... +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666655431 22456788899999999999999999998875
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.1e-11 Score=112.04 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=173.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc------C
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCF-------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------G 177 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 177 (514)
+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|.+.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998873 22345677888999999999999999999998764 1
Q ss_pred -CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHHc---
Q 010236 178 -ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GF-QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM--- 246 (514)
Q Consensus 178 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--- 246 (514)
......++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2234668889999999999999999999998764 22 223566788889999999999999999998764
Q ss_pred ---C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCChHHHHH
Q 010236 247 ---G-LSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-------SIRPD-------IVTWNSLIRWHCKAGDVAKALE 308 (514)
Q Consensus 247 ---~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~-------~~~~~~li~~~~~~g~~~~A~~ 308 (514)
+ .+....++..+...|...|++++|.+.++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 1223567888999999999999999999998752 11111 1122223333445556666677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 309 LFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 309 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.+...... ...+..++..+..+|.+.|++++|...+++..+.
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77766543 1234567888999999999999999999988764
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=5.3e-10 Score=105.78 Aligned_cols=299 Identities=12% Similarity=0.045 Sum_probs=187.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHH
Q 010236 185 YEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF----VYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLD----RQIY 255 (514)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~ 255 (514)
+......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999998887764322222 455566777788999999888888765311 112 2335
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 010236 256 NSIIDTFGKYGELVEALEVFEKMQQE----SIR--PD-IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY--P--DPKI 324 (514)
Q Consensus 256 ~~li~~~~~~~~~~~A~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~ 324 (514)
..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777788888888888888876542 211 22 345566777788888888888888887653211 1 2345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCC--CcHHHHH----HHHHHHHhcCCcchHHHHHHHHHHcCCCC---CHHHH
Q 010236 325 FITIISCLGELGKWDVIKKNFENMKDRGHG--KIGAIYA----ILVDIYGQYGRFRDPEECIAALKLEGLQP---SGSMF 395 (514)
Q Consensus 325 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 395 (514)
+..+...+...|++++|...+++....... ....... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 666777778888888888888877653111 1111111 23344667888888888887766433211 12245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPE----GIEPNL-VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++...... . ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHHH
Confidence 56677777888888888888776542 212222 2556667777788888888888887765310 0 11223
Q ss_pred HHHcCCCcchHHHHHHHHHhC
Q 010236 471 AFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 471 ~~~~~g~~~~a~~~~~~m~~~ 491 (514)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 344444 5666677777663
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=1.7e-10 Score=109.48 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=139.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC---CC-CHHHHHH
Q 010236 259 IDTFGKYGELVEALEVFEKMQQESI-RPD----IVTWNSLIRWHCKAGDVAKALELFTQMQEQ--GF---YP-DPKIFIT 327 (514)
Q Consensus 259 i~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~~~~~ 327 (514)
...+...|++++|...|++..+... .++ ..++..+...|...|++++|+..+++..+. .. .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566777777777776654310 112 345566666777777777777777766532 00 10 1345556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH-----cCCCCCHHHHHH
Q 010236 328 IISCLGELGKWDVIKKNFENMKDR----GH-GKIGAIYAILVDIYGQYGRFRDPEECIAALKL-----EGLQPSGSMFCI 397 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 397 (514)
+...|...|++++|...+.+..+. +. .....++..+...|...|++++|.+.+++... ... ....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHH
Confidence 666777777777777777666542 11 11234566677777777888888777777765 322 22556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHH
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEPEG----IEPNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPD-LVTYSTLM 469 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 469 (514)
+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +++|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 7777888888888888887765531 11123345555566666677 66666666652 22222 33556777
Q ss_pred HHHHcCCCcchHHHHHHHHHh
Q 010236 470 KAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 470 ~~~~~~g~~~~a~~~~~~m~~ 490 (514)
..|...|++++|.+.+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888887764
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=9.2e-10 Score=104.10 Aligned_cols=268 Identities=12% Similarity=-0.001 Sum_probs=153.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----hHhHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSI----SYASLIEALASVGRTLEADAIFQEMVCFGF-NPK----LRFYNI 152 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~ 152 (514)
.....+...|++++|+..+++.....-..+.. +++.+...+...|++++|.+.+++...... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999987754222222 456667778888999999998888765210 111 123556
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc----CCC--c-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----ChhhHH
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDM----GIC--R-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL----NSFVYG 221 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~ 221 (514)
+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++........ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 677777888888888888776543 111 1 23455666777777888888888887776543211 123455
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 010236 222 KVIGLYRDNGMWKKAVGIVEEIREMGLSL-D-RQIYN----SIIDTFGKYGELVEALEVFEKMQQESIRP---DIVTWNS 292 (514)
Q Consensus 222 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ 292 (514)
.+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+ ....+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 56666777777777777777665431111 1 11111 22233556677777777766655432111 1223445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010236 293 LIRWHCKAGDVAKALELFTQMQEQ----GFYPDP-KIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555666666666666666655431 111111 133333444445555555555554443
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=1.4e-10 Score=97.47 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=106.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445666777777788888888887776543 3456667777777777777777777777777653 34566666677777
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAV 237 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 237 (514)
...|++++|.+.++++.+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777666533 345566666666666666666666666665543 223455555555566666666666
Q ss_pred HHHHHHHH
Q 010236 238 GIVEEIRE 245 (514)
Q Consensus 238 ~~~~~~~~ 245 (514)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1e-10 Score=118.89 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=147.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
..+|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5679999999999999999999999998874 4467899999999999999999999999999875 4568899999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 236 (514)
+.+.|++++|++.|++..+... -+...|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999988654 46789999999999999999999999999987433 678899999999999999999
Q ss_pred HHHHHHHHH
Q 010236 237 VGIVEEIRE 245 (514)
Q Consensus 237 ~~~~~~~~~ 245 (514)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=3.4e-10 Score=94.99 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=81.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 44555556666666666666666655432 33455555566666666666666666666555422 23445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
..|++++|.+.++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 1133444444444444555555555554444432 2233444444444444444444444
Q ss_pred HHHHH
Q 010236 274 VFEKM 278 (514)
Q Consensus 274 ~~~~m 278 (514)
.+++.
T Consensus 166 ~~~~~ 170 (186)
T 3as5_A 166 HFKKA 170 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=2.1e-10 Score=116.55 Aligned_cols=167 Identities=9% Similarity=-0.008 Sum_probs=147.5
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHH
Q 010236 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 189 (514)
-+..+|+.+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+... -+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 346789999999999999999999999999875 45678999999999999999999999999988654 4578999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 010236 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELV 269 (514)
Q Consensus 190 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 269 (514)
..+.+.|++++|++.|++..+.... +...|..+..++.+.|++++|++.|++.++.. +-+...+..+...|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999887433 67889999999999999999999999999875 456889999999999999999
Q ss_pred HHHHHHHHHHH
Q 010236 270 EALEVFEKMQQ 280 (514)
Q Consensus 270 ~A~~~~~~m~~ 280 (514)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.7e-09 Score=94.41 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010236 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI 366 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 366 (514)
...+......+...|++++|+..|++..+....++...+..+..++...|++++|...++...+.. +.+..++..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444455555555555555555443222344444444455555555555555555555443 2234455555555
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHH
Q 010236 367 YGQYGRFRDPEECIAALKLEGLQPSG-------SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN---LVMLNVLINA 436 (514)
Q Consensus 367 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~ 436 (514)
|...|++++|...+++..+... .+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 5555555555555555554422 122 23555556666777777777777777664 343 4456666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
|...| ...++++...+.. +...|.... ....+.+++|...+++..+ +.|+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 65433 3334444433222 333333332 2234556777777777776 455443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=2.1e-09 Score=93.85 Aligned_cols=194 Identities=10% Similarity=-0.041 Sum_probs=151.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
|+..|......+.+.|++++|++.|++..+..-+++...+..+..++...|++++|++.|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4567888889999999999999999999887633788888889999999999999999999999875 446778999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcCh-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHH
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQ-------ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN---SFVYGKVIG 225 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~ 225 (514)
++...|++++|.+.|++..+..+ .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 99999999999999999988653 234 45888888899999999999999999876 343 456666666
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 226 LYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
++... +...++++...+ ..+...|.... ....+.+++|+..|++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 66544 344455555543 23444444443 23446689999999998875
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.8e-10 Score=103.98 Aligned_cols=227 Identities=12% Similarity=0.015 Sum_probs=153.1
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCChHhHHHHH
Q 010236 89 KLGDIDEAMALLAQMQA-------LGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF------GF-NPKLRFYNILL 154 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~li 154 (514)
..|++++|+..|++..+ ...+....++..+...+...|++++|...++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 222234667888999999999999999999988764 21 23456788899
Q ss_pred HHHHhcCChhhHHHHHHHHHHc------C-CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhhH
Q 010236 155 RGFLKKGLLGLGSRLLMVMEDM------G-ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK------GFQL-NSFVY 220 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 220 (514)
..|...|++++|.+.|++..+. . .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 1 1234667888999999999999999999998765 1122 35677
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHc-------CC-CCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCC
Q 010236 221 GKVIGLYRDNGMWKKAVGIVEEIREM-------GL-SLDRQIYNSIIDTFGKYGE------LVEALEVFEKMQQESIRPD 286 (514)
Q Consensus 221 ~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~~~~p~ 286 (514)
..+...+...|++++|...+++..+. .. ......+..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88889999999999999999988763 11 1122233333333332222 33333333332211 1123
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010236 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQ 316 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 316 (514)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888899999999999999999988753
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.9e-10 Score=102.70 Aligned_cols=228 Identities=9% Similarity=-0.001 Sum_probs=159.5
Q ss_pred HhcCChHHHHHHHHHHHHc-------CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc------C-CCcChHhHHHH
Q 010236 123 ASVGRTLEADAIFQEMVCF-------GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM------G-ICRNQETYEIL 188 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l 188 (514)
...|++++|+..|++..+. ..+....++..+...|...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766552 22334677889999999999999999999998764 1 12345688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc------C-CCCCHHH
Q 010236 189 LDYHVNAGRLDDTWLIINEMRSK------G-FQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREM------G-LSLDRQI 254 (514)
Q Consensus 189 i~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 254 (514)
...+...|++++|.+.+.+.... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224567888889999999999999999998865 1 1224567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCChHHHH------HHHHHHHHCCCCC
Q 010236 255 YNSIIDTFGKYGELVEALEVFEKMQQE-------SIRP-DIVTWNSLIRWHCKAGDVAKAL------ELFTQMQEQGFYP 320 (514)
Q Consensus 255 ~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~------~~~~~m~~~g~~p 320 (514)
+..+...|.+.|++++|.+.+++..+. ...+ ....|..+...+...+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 1112 2223333333333333322222 22221111 1112
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 321 DPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 321 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
...++..+...+...|++++|...+++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778889999999999999999988764
No 87
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=2.9e-08 Score=96.76 Aligned_cols=369 Identities=8% Similarity=-0.006 Sum_probs=201.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCC-CChHhHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-TLEADAIFQEMVCF-GFN-PKLRFYNILLR 155 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-g~~-~~~~~~~~li~ 155 (514)
.|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |.. .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 45566666544 7788888888877764 4677777777776666553 34566677766652 422 35566666665
Q ss_pred HHH----hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 156 GFL----KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 156 ~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
.+. ..++.+.+.++|++........-...|......-. ......+.+++.+. .+
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~---------------------~~ 151 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDT---------------------LP 151 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHH---------------------HH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHH---------------------hH
Confidence 443 23556677777777776321111112222221111 11111122111111 01
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010236 232 MWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG--E-----LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
.+..|..+++.+...--..+...|...++.-...+ - .+.+..+|+++.... +.+...|...+.-+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 23333444443332100013345555444422211 0 234566777776542 335667777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC------------CCCcHHHHHHHHHHHHhcCC
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRG------------HGKIGAIYAILVDIYGQYGR 372 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~ 372 (514)
+|..++++.... |....+.. .|....+.++. ++.+.+.- ......+|...+....+.+.
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 888888888775 33322211 12221111111 22221110 01112456666666667778
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQ-QGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.. +-+...|...+....+.|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88899999888 32 22344444432222222 236889999998887752 2345556667777788899999999998
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 452 LMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 452 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
++. .....|...+.--...|+.+.+.++++++.+
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 873 2567788887777778988888888888774
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.16 E-value=3.4e-09 Score=83.53 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..+...+.+.|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677778888888888888888887664 4456777777788888888888888888877654 445666777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
..|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 78888888888777776543 34566667777777777777777777776654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=3.1e-08 Score=88.39 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010236 271 ALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGF-YPDPKIFITIISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 271 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 23333334444455555555555555555443322 1123344444444555555555555555544
Q ss_pred h
Q 010236 350 D 350 (514)
Q Consensus 350 ~ 350 (514)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=2.7e-09 Score=97.07 Aligned_cols=89 Identities=10% Similarity=-0.143 Sum_probs=38.6
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC---c--ChHhHHHHHH
Q 010236 121 ALASVGRTLEADAIFQEMVCF----GFNPK-LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGIC---R--NQETYEILLD 190 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~li~ 190 (514)
.|...|++++|.+.|.+..+. |-+++ ..+|+.+..+|.+.|++++|...|++..+.... + -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555554431 11111 234455555555555555555555544331100 0 0223444444
Q ss_pred HHHhc-CCHHHHHHHHHHHH
Q 010236 191 YHVNA-GRLDDTWLIINEMR 209 (514)
Q Consensus 191 ~~~~~-g~~~~A~~~~~~m~ 209 (514)
.|... |++++|+..|++..
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 44443 55555554444443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=5.4e-09 Score=95.01 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=138.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--Ch
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQAL----GFHPS-SISYASLIEALASVGRTLEADAIFQEMVCFGF---NP--KL 147 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~---~~--~~ 147 (514)
..|+.....|...|++++|++.|++..+. |-+++ ..+|+.+..+|...|++++|+..|++..+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999987653 32222 46899999999999999999999998876321 11 14
Q ss_pred HhHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCc-C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---
Q 010236 148 RFYNILLRGFLKK-GLLGLGSRLLMVMEDMGICR-N----QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSF--- 218 (514)
Q Consensus 148 ~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--- 218 (514)
.+++.+...|... |++++|...|++..+..... + ..+++.+...+.+.|++++|+..|++...........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999987642111 1 3467788888888888888888888888764332221
Q ss_pred ---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 010236 219 ---VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDR------QIYNSIIDTFG--KYGELVEALEVFEKMQ 279 (514)
Q Consensus 219 ---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~--~~~~~~~A~~~~~~m~ 279 (514)
.+..+..++...|++++|...+++..+.. |+. ..+..++.++. ..+++++|++.|+++.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 45566667777788888888777766532 221 12333444443 3345666666665543
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=4e-08 Score=87.72 Aligned_cols=179 Identities=10% Similarity=-0.018 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 201 TWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL-SLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 201 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444332 22333344444555555555555555555544432 1234455555566666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 280 QESIRP-----DIVTWNSLIRWHCK----AGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 280 ~~~~~p-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
+. .| +..+...+..++.. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 33 13334444444221 22666666666666543 23322333333456666666666666665443
Q ss_pred cC---------CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 010236 351 RG---------HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLE 386 (514)
Q Consensus 351 ~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 386 (514)
.. -+.++.++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 13344555444444444454 666666666654
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=8.8e-07 Score=86.34 Aligned_cols=340 Identities=11% Similarity=-0.002 Sum_probs=202.4
Q ss_pred CccCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHC-CC-CCCHhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCC
Q 010236 73 EEFSGNSYNKSIQYCCKLGD-IDEAMALLAQMQAL-GF-HPSSISYASLIEALA----SVGRTLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~g~~~ 145 (514)
..|++..|...+....+.++ .+....+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+.. ++
T Consensus 43 ~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~ 120 (493)
T 2uy1_A 43 KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PM 120 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CC
T ss_pred cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hh
Confidence 35788999999998888774 46677888887764 42 346778888877654 346788999999999973 22
Q ss_pred ChHhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010236 146 KLRFYNILLRGFLK---KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (514)
Q Consensus 146 ~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 222 (514)
. .+..+-..|.. ......+.++..+.. +.+..|..+++++...-...+...|..
T Consensus 121 ~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 121 G--SLSELWKDFENFELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp T--THHHHHHHHHHHHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred h--hHHHHHHHHHHHHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 1 11222222221 111122222222111 123333434433322100012234444
Q ss_pred HHHHHHccC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010236 223 VIGLYRDNG--M-----WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIR 295 (514)
Q Consensus 223 ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 295 (514)
.+..-...+ - .+.+..+|++++... +.+...|-..+..+.+.|+.+.|..++++.... +.+...|.
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~---- 250 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL---- 250 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----
Confidence 444322211 1 244667888877653 456777887788888888888888888888776 33332232
Q ss_pred HHHhcCChHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 010236 296 WHCKAGDVAKALELFTQMQEQ---------GFYP---DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAIL 363 (514)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~---------g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (514)
.|....+.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|+.+ +.. ..+..+|...
T Consensus 251 ~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~ 325 (493)
T 2uy1_A 251 YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYC 325 (493)
T ss_dssp HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHH
T ss_pred HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHH
Confidence 22222122222 2222211 0011 1244566666666778899999999998 322 2344455433
Q ss_pred HHHHHhcC-CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 010236 364 VDIYGQYG-RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK 442 (514)
Q Consensus 364 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 442 (514)
...-...+ +.+.|..+|+...+... -+...|...++.....|+.+.|..+|+.+.+ ....|...+..-...|+
T Consensus 326 A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 326 AFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC
Confidence 33333333 69999999999987642 2455667777777888999999999999842 56788888888788899
Q ss_pred HHHHHHHHHHHHH
Q 010236 443 YKEALSVYHLMKD 455 (514)
Q Consensus 443 ~~~A~~~~~~m~~ 455 (514)
.+.+..+++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=1.8e-08 Score=79.18 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34455555666666666666666665543 23445555555555556666666666655554432 23444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIRE 245 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 245 (514)
..|++++|.+.++++..... .+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555544321 1333444444444444444444444444443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=9.7e-09 Score=88.13 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYAS----------------LIEALASVGRTLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~~g~~~ 145 (514)
.....+.+.|++++|+..|++..+.. +.+...|.. +..++.+.|++++|+..|++..+.. +.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 34456678889999999988887753 223344444 4455555555555555555555443 23
Q ss_pred ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 146 KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
+...+..+..++...|++++|.+.|++..+..+ .+...|..+...|.
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY 133 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 444555555555555555555555555554332 23444444444443
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3.5e-07 Score=82.47 Aligned_cols=223 Identities=6% Similarity=-0.005 Sum_probs=154.4
Q ss_pred HhcCCH-HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH----Hhc
Q 010236 88 CKLGDI-DEAMALLAQMQALGFHPSSISYASLIEALASVG--RTLEADAIFQEMVCFGFNPKLRFYNILLRGF----LKK 160 (514)
Q Consensus 88 ~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~~~ 160 (514)
.+.|.+ ++|+++++++...+ +-+...|+.--..+...| +++++++.++.+.... +.+..+|+.-...+ .+.
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 444554 68999999998875 445667888888888888 9999999999998865 45666777655555 445
Q ss_pred ---CChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---
Q 010236 161 ---GLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--DTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM--- 232 (514)
Q Consensus 161 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--- 232 (514)
+++++++++++++.+... .+..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 678888888888887655 57778888777777778777 888888888876543 56666665555666555
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHH
Q 010236 233 ---WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVE-ALEVFEKMQQES--IRPDIVTWNSLIRWHCKAGDVAKA 306 (514)
Q Consensus 233 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A 306 (514)
++++++.+++++... +.|...|+-+-..+.+.|+..+ +..+.+++.+.+ -..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 677777777777664 4567777776666666665333 444555443321 123556666666777777777777
Q ss_pred HHHHHHHHH
Q 010236 307 LELFTQMQE 315 (514)
Q Consensus 307 ~~~~~~m~~ 315 (514)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777664
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=1.7e-08 Score=90.03 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=117.1
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-C-CChHhH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---SISYASLIEALASVGRTLEADAIFQEMVCFGF-N-PKLRFY 150 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~-~~~~~~ 150 (514)
+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|+..|++..+... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34556667778889999999999999998763 223 56788888999999999999999999988631 1 224566
Q ss_pred HHHHHHHHh--------cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010236 151 NILLRGFLK--------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGK 222 (514)
Q Consensus 151 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 222 (514)
..+..++.+ .|++++|...|+++.+..+ .+...+..+.. +...... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 777788888 8999999999998887543 12222221110 0000000 0111334
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHC
Q 010236 223 VIGLYRDNGMWKKAVGIVEEIREMGLSL--DRQIYNSIIDTFGKY----------GELVEALEVFEKMQQE 281 (514)
Q Consensus 223 ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~ 281 (514)
+...+.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4555666666666666666665542111 233455555555544 6666666666666554
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.9e-08 Score=86.23 Aligned_cols=192 Identities=11% Similarity=0.061 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010236 287 IVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP-KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
...+......+.+.|++++|+..|++..+. .|+. ..+.. ..... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHH
Confidence 334444555677888888888888888764 3332 22222 00000 00111222334667
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--H
Q 010236 366 IYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--Y 443 (514)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~ 443 (514)
.|.+.|++++|...|++..+..+ -+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH
Confidence 77777888888888877776643 356677777777778888888888888777653 3456677777777665543 3
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010236 444 KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 344445544432 222223344445556667788888888888776 6777655554443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.01 E-value=4.7e-09 Score=107.19 Aligned_cols=172 Identities=7% Similarity=-0.085 Sum_probs=115.8
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010236 123 ASVGRTLEADAIFQEMV--------CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+...+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56677777777777776 332 34556677777777777777777777777766543 355677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010236 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEV 274 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 274 (514)
.|++++|.+.|++..+.... +...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777777766322 45666777777777777777 77777777664 34666777777778888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 010236 275 FEKMQQESIRPD-IVTWNSLIRWHCKAG 301 (514)
Q Consensus 275 ~~~m~~~~~~p~-~~~~~~li~~~~~~g 301 (514)
|++..+. .|+ ...|..+..++...+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 8777654 343 445656666654433
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.99 E-value=2.3e-08 Score=89.26 Aligned_cols=186 Identities=10% Similarity=0.029 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC--CCcHHH
Q 010236 285 PDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPD---PKIFITIISCLGELGKWDVIKKNFENMKDRGH--GKIGAI 359 (514)
Q Consensus 285 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 359 (514)
.+...+..+...+.+.|++++|+..|+++.+... .+ ...+..+..++.+.|++++|...++.+.+... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3566777778888899999999999999887532 12 56777788888899999999999998887642 223456
Q ss_pred HHHHHHHHHh--------cCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 010236 360 YAILVDIYGQ--------YGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLN 431 (514)
Q Consensus 360 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 431 (514)
+..+..++.. .|++++|...|+++....+. +......+ ..+...... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 7777777877 88888888888888776432 11122111 000000000 011134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHcC----------CCcchHHHHHHHHHh
Q 010236 432 VLINAFGVAGKYKEALSVYHLMKDIGISP--DLVTYSTLMKAFIRA----------KKFHKVPEIYKQMES 490 (514)
Q Consensus 432 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~ 490 (514)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 45566666666666666666665532211 233455555555544 566666666666665
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=1.3e-06 Score=78.75 Aligned_cols=219 Identities=11% Similarity=-0.002 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCcChHhHHHHHHHH----Hhc---CC
Q 010236 127 RTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYH----VNA---GR 197 (514)
Q Consensus 127 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 197 (514)
..++|+++++.++... +.+..+|+.--..+...| +++++++.++.+....+ .+..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998875 455667888888888888 89999999999988665 4566777665555 444 67
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------HH
Q 010236 198 LDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--KAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE------LV 269 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~ 269 (514)
+++++++++.+.+...+ +..+|+.-...+.+.|.++ ++++.++++++.+ +.|...|+.....+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 88888888888876433 5666666666666777777 7888888887765 4467777766666666555 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010236 270 EALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAK-ALELFTQMQEQG--FYPDPKIFITIISCLGELGKWDVIKKNFE 346 (514)
Q Consensus 270 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 346 (514)
++++.++++....+ -|...|+.+-..+.+.|+... +..+..++.+.+ -..++..+..+...+.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 77777777665532 366667766666666665333 334444444321 12345555566666666666666666666
Q ss_pred HHHh
Q 010236 347 NMKD 350 (514)
Q Consensus 347 ~~~~ 350 (514)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=1.2e-08 Score=84.92 Aligned_cols=163 Identities=8% Similarity=-0.023 Sum_probs=115.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-H
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-F 157 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~ 157 (514)
.+......+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|+..++++.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 35567778888999999999999876653 4467788888999999999999999998887653 344433332222 1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHH
Q 010236 158 LKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-NSFVYGKVIGLYRDNGMWKKA 236 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a 236 (514)
...+....|...|++..+..+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222333456777777776543 356777888888888888888888888887764432 345677777788888888888
Q ss_pred HHHHHHHHH
Q 010236 237 VGIVEEIRE 245 (514)
Q Consensus 237 ~~~~~~~~~ 245 (514)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776653
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=1.6e-08 Score=103.22 Aligned_cols=173 Identities=10% Similarity=-0.088 Sum_probs=140.0
Q ss_pred HhcCChhhHHHHHHHHH--------HcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 010236 158 LKKGLLGLGSRLLMVME--------DMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD 229 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 229 (514)
...|++++|.+.+++.. +... .+...|..+...+...|++++|++.|++..+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 4332 46678889999999999999999999999886432 67788888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010236 230 NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALEL 309 (514)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 309 (514)
.|++++|++.|++.++.. +.+...+..+...|.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999875 4467888899999999999999 99999988753 23677889999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCC
Q 010236 310 FTQMQEQGFYPD-PKIFITIISCLGELGK 337 (514)
Q Consensus 310 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 337 (514)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9988764 455 4566666666665554
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.4e-07 Score=81.01 Aligned_cols=29 Identities=17% Similarity=-0.024 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 287 IVTWNSLIRWHCKAGDVAKALELFTQMQE 315 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 315 (514)
...+..+...|...+++++|+.+|++..+
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.92 E-value=3.3e-07 Score=78.73 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=55.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 010236 182 QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNG----MWKKAVGIVEEIREMGLSLDRQIYNS 257 (514)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (514)
...+..+...|...+++++|++.|++..+.| ++..+..+...|.. + ++++|.++|++..+.+ +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3334444444444444444444444444432 23333333333333 3 4444554444444432 3344444
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 010236 258 IIDTFGK----YGELVEALEVFEKMQQESIR-PDIVTWNSLIRWHCK----AGDVAKALELFTQMQE 315 (514)
Q Consensus 258 li~~~~~----~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 315 (514)
|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|+.+|++..+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4444443 44555555555554443210 013444444444444 4455555555555544
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.92 E-value=5.9e-09 Score=84.16 Aligned_cols=143 Identities=8% Similarity=-0.076 Sum_probs=90.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445677777777777765431 1234456667777777788888888887777764 456677777777777777777
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHccC
Q 010236 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI-INEMRSKGFQLNSFVYGKVIGLYRDNG 231 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~ll~~~~~~g 231 (514)
+|...|++..+..+ -+...|..+...|.+.|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 77777777776543 3456677777777777776655544 3555554221 4455555545544444
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=3.8e-08 Score=98.65 Aligned_cols=154 Identities=12% Similarity=0.005 Sum_probs=102.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHH
Q 010236 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (514)
.|++++|++.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367788888888776653 3456777788888888888888888888887764 44567777888888888888888888
Q ss_pred HHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CChHHHHHHHHHHHHc
Q 010236 170 LMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---GMWKKAVGIVEEIREM 246 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 246 (514)
|++..+... .+...|..+...+.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888777543 4566777888888888888888888888777632 2566777777777777 8888888888887766
Q ss_pred C
Q 010236 247 G 247 (514)
Q Consensus 247 ~ 247 (514)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=1.9e-08 Score=83.70 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=84.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH
Q 010236 330 SCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA-YAQQGLC 408 (514)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 408 (514)
..+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++..... +...+..+... +...+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhccc
Confidence 33444455555555555444332 22344445555555555555555555555443321 22222211111 1111122
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHH
Q 010236 409 EQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 409 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
..|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 23566666666542 3346677777777777788888887777777654432 345677777777777887777777776
Q ss_pred HH
Q 010236 488 ME 489 (514)
Q Consensus 488 m~ 489 (514)
..
T Consensus 170 al 171 (176)
T 2r5s_A 170 QL 171 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=4.4e-08 Score=89.68 Aligned_cols=198 Identities=6% Similarity=-0.045 Sum_probs=96.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010236 195 AGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRD-NGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
.|++++|.+++++..+... . .+.. .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4556666666666554311 0 0112 45666666665544 345666677777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 010236 274 VFEKMQQE----SIRP-DIVTWNSLIRWHCKAGDVAKALELFTQMQEQ----GFYP-DPKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 274 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
.|.+..+. +-.+ -..+|+.+...|.+.|++++|+..|++..+. |-.. -..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77665432 1000 1235666666666777777777777665432 1000 12344445555555 66666666
Q ss_pred HHHHHHhcCCCC-----cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHhcCCHHHHHH
Q 010236 344 NFENMKDRGHGK-----IGAIYAILVDIYGQYGRFRDPEECIAALKLEGL----QPS-GSMFCILANAYAQQGLCEQTVK 413 (514)
Q Consensus 344 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~li~~~~~~g~~~~a~~ 413 (514)
.+++..+..... ...++..+...|.+.|++++|...|++...... .+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 665554321000 123444455555555555555555555443210 000 1123333334444455555555
Q ss_pred HHHHhh
Q 010236 414 VLQLME 419 (514)
Q Consensus 414 ~~~~~~ 419 (514)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555544
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=1.7e-07 Score=81.39 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=119.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----Hh
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKL----RF 149 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~ 149 (514)
..+..+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|+..|+++.+.. |+. ..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345566778889999999999999998763 32 3578888899999999999999999998864 332 13
Q ss_pred HHHHHHHHHh------------------cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010236 150 YNILLRGFLK------------------KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 150 ~~~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 211 (514)
+-.+..++.+ .|++++|...|+++.+..+ -+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----------HHHHHH---
Confidence 4444444443 3556666666666665422 1111221111000 000000
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010236 212 GFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQES 282 (514)
Q Consensus 212 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 282 (514)
......+...+.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113456778889999999999999887632111 2567888899999999999999999888763
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=4.5e-08 Score=88.56 Aligned_cols=162 Identities=7% Similarity=-0.029 Sum_probs=69.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHH-HHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYE-ILL 189 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li 189 (514)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 33444455555555555555555555555443 2344455555555555555555555555544322 2221111 111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCH
Q 010236 190 DYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSL-DRQIYNSIIDTFGKYGEL 268 (514)
Q Consensus 190 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 268 (514)
..+...++.++|...+++...... .+...+..+...+...|++++|...++++++..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 123333444444444444443321 133344444444444444444444444444332110 123334444444444444
Q ss_pred HHHHHHHH
Q 010236 269 VEALEVFE 276 (514)
Q Consensus 269 ~~A~~~~~ 276 (514)
++|...|+
T Consensus 272 ~~a~~~~r 279 (287)
T 3qou_A 272 DALASXYR 279 (287)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 44443333
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=5.1e-08 Score=88.23 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 010236 323 KIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCIL-ANA 401 (514)
Q Consensus 323 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~ 401 (514)
..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.... |+....... ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 334444445555555555555555555543 3344555555555555666666666655554432 232222111 122
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcch
Q 010236 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHK 480 (514)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 480 (514)
+...++.++|.+.+++..... +.+...+..+...+...|++++|.+.|+++.+..... +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 444555555666666665542 3455666666677777777777777777666543321 24456666777777777777
Q ss_pred HHHHHHHHH
Q 010236 481 VPEIYKQME 489 (514)
Q Consensus 481 a~~~~~~m~ 489 (514)
|...+++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666554
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=1.6e-08 Score=81.53 Aligned_cols=140 Identities=10% Similarity=-0.084 Sum_probs=69.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHH
Q 010236 122 LASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDT 201 (514)
Q Consensus 122 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 201 (514)
+...|++++|++.++...... +.+...+-.+...|.+.|++++|.+.|++..+..+ .+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHH
Confidence 334455566666655554321 11233344455556666666666666666555432 3455555555555556666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010236 202 WLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGI-VEEIREMGLSLDRQIYNSIIDTFGKY 265 (514)
Q Consensus 202 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (514)
+..|++..+.... +..++..+...+.+.|++++|.+. +++..+.. +.+..+|......+...
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 6555555554221 344555555555555555443332 34444432 22344444444444333
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.85 E-value=3.2e-07 Score=79.60 Aligned_cols=187 Identities=6% Similarity=0.006 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcH--HHHH
Q 010236 286 DIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFY-P-DPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIG--AIYA 361 (514)
Q Consensus 286 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 361 (514)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|...++.+.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4455666777888999999999999998874321 1 1356777888899999999999999998876533221 2444
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-H------------
Q 010236 362 ILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNL-V------------ 428 (514)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~------------ 428 (514)
.+..++.+.+.. .+. .|..+...+...|++++|...|+++.+. .|+. .
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHH
Confidence 444455432100 000 0111111222233444444444444433 1111 1
Q ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 429 -----MLNVLINAFGVAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 429 -----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
....+...|.+.|++++|+..|+++.+...... ...+..+..++.+.|+.++|.+.++.+...
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 113456778899999999999999987533211 256888899999999999999999988875
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=1.4e-07 Score=86.40 Aligned_cols=225 Identities=10% Similarity=0.004 Sum_probs=113.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010236 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALAS-VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
.|++++|.+++++..+.. +.. +.. .++++.|...|.++ ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467888888888776531 110 011 34555555554443 233445555555555
Q ss_pred HHHHHHHcC----CC-cChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHccCChHHHHH
Q 010236 169 LLMVMEDMG----IC-RNQETYEILLDYHVNAGRLDDTWLIINEMRSK----GFQL-NSFVYGKVIGLYRDNGMWKKAVG 238 (514)
Q Consensus 169 ~~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~ 238 (514)
.|.+..+.. -. .-..+|+.+...|...|++++|+..|++..+. |-.. -..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 555443321 00 01234555555555566666666555554332 1110 12345555555655 66666666
Q ss_pred HHHHHHHcCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 010236 239 IVEEIREMGLSL-----DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNSLIRWHCKAGDVAKALE 308 (514)
Q Consensus 239 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~ 308 (514)
.|++.++..... ...+++.+...|.+.|++++|+..|++.... +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666655421000 1345666666777777777777777665542 11111 1245555566666677777777
Q ss_pred HHHHHHHCCCC--CC--HHHHHHHHHHHHccCCHHHHHH
Q 010236 309 LFTQMQEQGFY--PD--PKIFITIISCLGELGKWDVIKK 343 (514)
Q Consensus 309 ~~~~m~~~g~~--p~--~~~~~~ll~~~~~~~~~~~a~~ 343 (514)
.|++.. .... .. ......++.++ ..++.+....
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777766 3211 11 12333444444 4556555544
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=1.4e-07 Score=94.53 Aligned_cols=154 Identities=8% Similarity=-0.035 Sum_probs=118.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHH
Q 010236 125 VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLI 204 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 204 (514)
.|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+... .+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988764 45678899999999999999999999999988654 4678899999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 010236 205 INEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY---GELVEALEVFEKMQQE 281 (514)
Q Consensus 205 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~ 281 (514)
+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887432 67888899999999999999999999998875 45678889999999999 9999999999998876
Q ss_pred C
Q 010236 282 S 282 (514)
Q Consensus 282 ~ 282 (514)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=4.7e-07 Score=77.69 Aligned_cols=130 Identities=11% Similarity=-0.093 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+..+...+.+.|++++|++.|++.. .|+...|..+...+...|++++|++.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567778889999999999999874 5688899999999999999999999999998865 557788999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCc---------------ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010236 159 KKGLLGLGSRLLMVMEDMGICR---------------NQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 213 (514)
+.|++++|.+.|++..+..... ....+..+...+.+.|++++|.+.|++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998854311 126788888889999999999999999887643
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=5.8e-06 Score=75.36 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
++.+-....+.+..++|+++++++...+ +-+..+|+.--..+...| .++++++.++.+.... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333333444555678999999998875 445667888888888888 5899999999998865 567778888777777
Q ss_pred hc-C-ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010236 159 KK-G-LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLD--------DTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 159 ~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
+. + ++++++++++++.+... .|...|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 78888888888887654 56777777666665555555 677777777766433 5566666665555
Q ss_pred ccCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010236 229 DNGM-------WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYG 266 (514)
Q Consensus 229 ~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 266 (514)
+.+. ++++++.+++.+... +-|...|+-+-..+.+.|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 5554 466666666666553 345666655554444444
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.74 E-value=2.8e-06 Score=76.96 Aligned_cols=161 Identities=10% Similarity=0.002 Sum_probs=84.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCC-CcCh----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----hhhHHHH
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGI-CRNQ----ETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-N----SFVYGKV 223 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~l 223 (514)
+..+...|++++|.+.+++..+... .|+. ..+..+...+...+++++|+..|++........ + ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4555666777777777766665321 1111 122234555555666777777776666532221 2 1245666
Q ss_pred HHHHHccCChHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREM-----GLSL-DRQIYNSIIDTFGKYGELVEALEVFEKMQQE----SIRPD-IVTWNS 292 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 292 (514)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...+++..+. +..+. ...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666531 1111 1235555666666666666666666554421 11111 345555
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHH
Q 010236 293 LIRWHCKAGD-VAKALELFTQMQ 314 (514)
Q Consensus 293 li~~~~~~g~-~~~A~~~~~~m~ 314 (514)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5566666663 466666655544
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.73 E-value=2.4e-06 Score=77.43 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=99.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcCC-CCc----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHHHHHH
Q 010236 329 ISCLGELGKWDVIKKNFENMKDRGH-GKI----GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQ-PS----GSMFCIL 398 (514)
Q Consensus 329 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 398 (514)
+..+...|++++|...++...+... .++ ...+..+...+...+++++|...+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4445556666666666666554321 111 112334555555666777777777776653221 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHH
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPE-----GIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDI----GISPD-LVTYST 467 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 467 (514)
...|...|++++|...++++.+. +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777888888888777776631 11222 236778888888888888888888877532 22222 557788
Q ss_pred HHHHHHcCCC-cchHHHHHHHHHh
Q 010236 468 LMKAFIRAKK-FHKVPEIYKQMES 490 (514)
Q Consensus 468 l~~~~~~~g~-~~~a~~~~~~m~~ 490 (514)
+..++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888885 4888888887763
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.73 E-value=4.3e-07 Score=70.54 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=75.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456677778888888888888888877764 4567778888888888888888888888887764 45567777778888
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 010236 158 LKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~ 177 (514)
...|++++|.+.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 88888888888888777754
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=5.5e-07 Score=73.66 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=95.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456777788888899999999988887764 4467778888888888888888888888888764 4566777888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYE--ILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
+...|++++|.+.|++..+... .+...+. .....+...|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888777543 2333443 33333666777777777776654
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=6.4e-07 Score=69.04 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=76.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566777777778888888888888777653 3456677777777777788888888777777654 3456667777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
+...|++++|.+.|+++.+..+ .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 7777777777777777766432 2333444443333
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.6e-07 Score=78.01 Aligned_cols=119 Identities=7% Similarity=0.063 Sum_probs=75.3
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA-FGVAGKY--KE 445 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 445 (514)
..|++++|...+++...... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45666777777776665532 355666667777777777777777777766542 3355566666666 6667776 77
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 446 ALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|...++++.+.... +...+..+..++...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777664332 456666677777777777777777777766
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.69 E-value=7.3e-07 Score=69.73 Aligned_cols=121 Identities=9% Similarity=-0.043 Sum_probs=95.4
Q ss_pred CccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 010236 73 EEFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNI 152 (514)
Q Consensus 73 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 152 (514)
...+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 34456788889999999999999999999998764 4467888888899999999999999999988864 456778888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC
Q 010236 153 LLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG 196 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 196 (514)
+..++.+.|++++|.+.|++..+... .+...+..+...+...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 88888899999999999988877543 23455555655555443
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.68 E-value=2.1e-05 Score=71.75 Aligned_cols=188 Identities=11% Similarity=0.024 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhhHHHHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKG-LLGLGSRLL 170 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~ 170 (514)
++.+|...++.+.+.+ +..++|+++++.++... +.+..+|+.--..+...| +++++++.+
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556666666665543 33468999999999875 556677888888888888 599999999
Q ss_pred HHHHHcCCCcChHhHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH--------HHHHHH
Q 010236 171 MVMEDMGICRNQETYEILLDYHVNA-G-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWK--------KAVGIV 240 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~ 240 (514)
+.+....+ .+..+|+.-...+.+. + ++++++++++.+.+...+ |..+|+.-...+.+.|.++ ++++.+
T Consensus 113 ~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 113 NEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 99998765 5778888888777776 6 889999999999876433 5666665555555555555 788888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010236 241 EEIREMGLSLDRQIYNSIIDTFGKYGE-------LVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGD 302 (514)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 302 (514)
+++++.+ +.|...|+.....+.+.+. ++++++.+++..... +-|...|+-+-..+.+.|.
T Consensus 191 ~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 191 NEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8888775 4577888888777777765 677888877776653 2366677766655555554
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=8.1e-07 Score=76.21 Aligned_cols=129 Identities=11% Similarity=0.055 Sum_probs=93.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010236 324 IFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYA 403 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 403 (514)
.+..+...+...|++++|...+++.. .++..++..+...|.+.|++++|...+++..... +.+...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666777888888888887763 4466777788888888888888888888877664 235667777778888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010236 404 QQGLCEQTVKVLQLMEPEGIEPNL----------------VMLNVLINAFGVAGKYKEALSVYHLMKDIGI 458 (514)
Q Consensus 404 ~~g~~~~a~~~~~~~~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 458 (514)
..|++++|.+.|++..+.. +.+. ..+..+..+|...|++++|.+.|+++.+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888777653 2222 5677777788888888888888888776543
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=6.8e-06 Score=74.43 Aligned_cols=164 Identities=7% Similarity=-0.007 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC---Cc--H
Q 010236 289 TWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDP------KIFITIISCLGELGKWDVIKKNFENMKDRGHG---KI--G 357 (514)
Q Consensus 289 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~ 357 (514)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+.+..+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677777777777777776654221 11 11222334445556666666666665542111 11 2
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCC-C
Q 010236 358 AIYAILVDIYGQYGRFRDPEECIAALKL---EGLQ-P--SGSMFCILANAYAQQGLCEQTVKVLQLMEPEG----IEP-N 426 (514)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-~ 426 (514)
.+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|.+.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3455555555555666666555555541 1100 0 01344455555555555555555555443321 000 1
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 010236 427 LVMLNVLINAFGVAGKYKEA-LSVYHLM 453 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A-~~~~~~m 453 (514)
..+|..+..+|.+.|++++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34455555555555555555 4444443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=5.7e-07 Score=72.15 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|+++.+..+. ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 45555666666777777777777666653 335666667777777777777777777777664333 4556666777777
Q ss_pred cCCCcchHHHHHHHHHhCCCCCCHH
Q 010236 474 RAKKFHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~ 498 (514)
+.|++++|.+.|++..+ +.||..
T Consensus 116 ~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCCHH
Confidence 77777777777777766 445553
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=3.1e-07 Score=82.72 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 455666667777777777777777776653 3356667777777777777777777777776653 34556666666777
Q ss_pred HhcCChhhHHHHHHHHHH
Q 010236 158 LKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~ 175 (514)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777766654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.62 E-value=5.4e-07 Score=74.79 Aligned_cols=122 Identities=7% Similarity=0.012 Sum_probs=99.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-HHhcCCh--h
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG-FLKKGLL--G 164 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~ 164 (514)
...|++++|+..+++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45689999999999988764 5577889999999999999999999999998865 4567788888888 7788998 9
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010236 165 LGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
+|...|++..+..+ .+...+..+...+...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999988654 457788888999999999999999999988874
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=6.2e-07 Score=76.20 Aligned_cols=156 Identities=14% Similarity=-0.048 Sum_probs=87.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHHHHHHHHHhcCC
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF----GF-NPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~ 162 (514)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4568888888855555432 1234567777888888888888888888877651 11 1223456666777777777
Q ss_pred hhhHHHHHHHHHHc----CCCc--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccC
Q 010236 163 LGLGSRLLMVMEDM----GICR--NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ-LN----SFVYGKVIGLYRDNG 231 (514)
Q Consensus 163 ~~~A~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g 231 (514)
+++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++....... .+ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777765543 1011 1334555666666666666666666665432100 01 112334444555555
Q ss_pred ChHHHHHHHHHHH
Q 010236 232 MWKKAVGIVEEIR 244 (514)
Q Consensus 232 ~~~~a~~~~~~~~ 244 (514)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=1.5e-06 Score=67.36 Aligned_cols=97 Identities=8% Similarity=-0.134 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
..+......+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.|++..+.+. .+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 345566667777777777777777776654 44566667777777777777777777777666543 3455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010236 193 VNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~ 211 (514)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6777777777776666655
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=1.1e-06 Score=68.42 Aligned_cols=119 Identities=8% Similarity=0.045 Sum_probs=84.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44567777778888888888888888877653 3466777777888888888888888888877754 345667777777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC
Q 010236 156 GFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR 197 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 197 (514)
.+.+.|++++|.+.|++..+... .+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 77777888888877777776543 345556666666655554
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=2e-06 Score=70.22 Aligned_cols=128 Identities=7% Similarity=-0.005 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHH
Q 010236 113 ISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYH 192 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 192 (514)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+... .+...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345566666777777777777777776653 34566666667777777777777777776666432 3455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHH--HHHHHHccCChHHHHHHHHHH
Q 010236 193 VNAGRLDDTWLIINEMRSKGFQLNSFVYGK--VIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 193 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~ 243 (514)
...|++++|...|++..+.... +...+.. ....+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666654221 2233322 222244455555555555543
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=5.9e-06 Score=74.85 Aligned_cols=167 Identities=11% Similarity=0.019 Sum_probs=126.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCC---CCC--HH
Q 010236 324 IFITIISCLGELGKWDVIKKNFENMKDRGHGKI-----GAIYAILVDIYGQYGRFRDPEECIAALKLEGL---QPS--GS 393 (514)
Q Consensus 324 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 393 (514)
.+...+..+...|++++|.+.+....+...... ...+..+...+...|++++|...+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778899999999999998887543221 12344566777888999999999999875422 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCc-CH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPE-GIEPN-----LVMLNVLINAFGVAGKYKEALSVYHLMKDIG----ISP-DL 462 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~ 462 (514)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+..+|...|++++|++.+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988731 00122 2588899999999999999999999986431 111 15
Q ss_pred HHHHHHHHHHHcCCCcchH-HHHHHHHHh
Q 010236 463 VTYSTLMKAFIRAKKFHKV-PEIYKQMES 490 (514)
Q Consensus 463 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 490 (514)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887763
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=6.6e-07 Score=71.78 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666777777778888888777777664 4456777777777777777777777777777754 4456677777777
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 010236 157 FLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~ 177 (514)
|.+.|++++|.+.|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777643
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.4e-06 Score=65.75 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=60.6
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4456666666667777777777777666543 34455666666666666666666666666665432 345555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 010236 192 HVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~ 211 (514)
+...|++++|...++++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665554
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=4.2e-05 Score=69.39 Aligned_cols=137 Identities=9% Similarity=0.038 Sum_probs=83.0
Q ss_pred HhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 88 CKLGDID-EAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 88 ~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
.+.|+++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556665 7788888887764 3344556654444433332 466777777776654 4566666666666
Q ss_pred HHhcCC--hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010236 157 FLKKGL--LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGR-LDDTWLIINEMRSKGFQLNSFVYGKVIGLYR 228 (514)
Q Consensus 157 ~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 228 (514)
+.+.|+ +++++.+++++.+..+ .|...|+.-...+...|. ++++++.++++.+..+. |...|+.....+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 666663 6677777777776554 566666666666666666 46677777777665433 5555555444443
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=1e-06 Score=79.31 Aligned_cols=99 Identities=11% Similarity=-0.033 Sum_probs=77.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45667777888888888888888888888764 34677788888888888888888888888877543 45667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 010236 191 YHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~ 211 (514)
++...|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=1e-06 Score=77.55 Aligned_cols=187 Identities=10% Similarity=-0.078 Sum_probs=100.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC---------------
Q 010236 89 KLGDIDEAMALLAQMQALGFHPSSISYASL-------IEALASVGRTLEADAIFQEMVCFGFNPK--------------- 146 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 146 (514)
+.++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5788888888888888764 4456677777 4566665555666555554443 2222
Q ss_pred -------hHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--h
Q 010236 147 -------LRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN--S 217 (514)
Q Consensus 147 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~ 217 (514)
...+-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1122334455666667777777666665433 322244444445666666666666665332221 000 1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010236 218 FVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQE 281 (514)
Q Consensus 218 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 281 (514)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2344455555566666666666665553322122 223444445555555555665555555543
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=3.4e-06 Score=65.49 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010236 357 GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
...+..+...+...|++++|...+++...... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34455555555666666666666666555432 244555556666666666666666666665542 3345556666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc
Q 010236 437 FGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKF 478 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 478 (514)
+...|++++|.+.|++..+.... +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 66666666666666666554322 445555555555555543
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=4.5e-07 Score=72.77 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 010236 357 GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINA 436 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 436 (514)
...+..+...+.+.|++++|...|++....+. .+...|..+..+|...|++++|.+.|++..... +.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 33444445555555555555555555554432 244445555555555555555555555554432 2234444555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 010236 437 FGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~ 455 (514)
|...|++++|.+.|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=5.1e-06 Score=73.18 Aligned_cols=132 Identities=11% Similarity=-0.017 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHH
Q 010236 360 YAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN--LVMLNVLINAF 437 (514)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~ 437 (514)
...+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3344555556666666666666555432 332233444445666666666666666444321 110 22455566666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCC
Q 010236 438 GVAGKYKEALSVYHLMKDIGISPD--LVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPD 496 (514)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 496 (514)
...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++.. ..|+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 666677777666666654322132 23455555566666666677766666666 3454
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=1.3e-06 Score=74.24 Aligned_cols=86 Identities=10% Similarity=-0.060 Sum_probs=43.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-cChHhHHHHHHHHHhcCC
Q 010236 123 ASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM----GIC-RNQETYEILLDYHVNAGR 197 (514)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~ 197 (514)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 345667777664444432 11123455666666666666666666666665541 111 123344555555555555
Q ss_pred HHHHHHHHHHHH
Q 010236 198 LDDTWLIINEMR 209 (514)
Q Consensus 198 ~~~A~~~~~~m~ 209 (514)
+++|.+.+++..
T Consensus 82 ~~~A~~~~~~al 93 (203)
T 3gw4_A 82 WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.8e-06 Score=79.90 Aligned_cols=131 Identities=8% Similarity=-0.095 Sum_probs=78.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------hHhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010236 112 SISYASLIEALASVGRTLEADAIFQEMVCFGFNPK--------------LRFYNILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 112 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
...+..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|...|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666666666666666655431111 3566666666666666666666666666654
Q ss_pred CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH-HHHHHHHH
Q 010236 178 ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKA-VGIVEEIR 244 (514)
Q Consensus 178 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 244 (514)
. .+...|..+..+|...|++++|...|++..+.... +...+..+..++...|+.+++ ...++.|.
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35566666666666677777777776666665322 455566666666666666666 33455544
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.51 E-value=7.8e-07 Score=71.32 Aligned_cols=94 Identities=16% Similarity=0.041 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHh
Q 010236 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVN 194 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 194 (514)
+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++..+..+ .+...|..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3334444444444444444444444432 23344444444444444444444444444444322 233344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010236 195 AGRLDDTWLIINEMRS 210 (514)
Q Consensus 195 ~g~~~~A~~~~~~m~~ 210 (514)
.|++++|...|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=3e-06 Score=66.12 Aligned_cols=99 Identities=7% Similarity=-0.090 Sum_probs=63.1
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...|..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 44556666667777777777777777766543 33556666666666667777777777666665432 34556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 010236 191 YHVNAGRLDDTWLIINEMRSK 211 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~ 211 (514)
.+...|++++|.+.|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666666554
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2e-06 Score=79.59 Aligned_cols=123 Identities=10% Similarity=-0.150 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc--------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 010236 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKI--------------GAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 387 (514)
...+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|...+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555566666666777777776666665542221 2444444444444455555554444444432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010236 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (514)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (514)
. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 233444444444444444444444444444432 22334444444444444444444
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.9e-06 Score=65.01 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=71.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 356667777778888888888888877664 4456777777778888888888888888777764 44566777777777
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 010236 158 LKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~ 176 (514)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777777653
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=2.5e-06 Score=66.25 Aligned_cols=106 Identities=15% Similarity=0.062 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cC----HHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PD----LVTYST 467 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 467 (514)
.+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 35556666777777777777777766653 335666777777777777777777777776543111 11 135666
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHH
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQI 502 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 502 (514)
+..++...|++++|++.|++..+ ..||..+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 66777777777777777777766 4566554433
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=6.6e-06 Score=62.44 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=68.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
..|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777777788888888888776653 3456667777777777777777777777777654 34566667777777
Q ss_pred HhcCChhhHHHHHHHHHHcC
Q 010236 158 LKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~ 177 (514)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77777777777777776643
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=5e-06 Score=64.37 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34444555556666666666666655542 334555666666666666666666666666554322 4555666666666
Q ss_pred cCCCcchHHHHHHHHHh
Q 010236 474 RAKKFHKVPEIYKQMES 490 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (514)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666654
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=0.00027 Score=64.13 Aligned_cols=188 Identities=7% Similarity=-0.026 Sum_probs=125.0
Q ss_pred HhcCChH-HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 123 ASVGRTL-EADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL----------LGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 123 ~~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
.+.|.+. +|+.+++.+...+ +.+..+|+.--..+...+. +++++.+++.+....+ .+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3455554 7899999998765 4455566665444444333 5778888888877654 577788887777
Q ss_pred HHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 010236 192 HVNAG--RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGM-WKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKY--- 265 (514)
Q Consensus 192 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 265 (514)
+...+ .+++++.+++.+.+.... |..+|+.-...+...|. ++++++.++.+++.+ +.|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77777 478888888888887443 66667666666677777 588888888888775 45777777766655544
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHH
Q 010236 266 -----------GELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKA-----------GDVAKALELFTQMQE 315 (514)
Q Consensus 266 -----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 315 (514)
+.++++++.+++..... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677777777766543 23566666444444333 235566666666665
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.43 E-value=4.2e-06 Score=64.94 Aligned_cols=114 Identities=12% Similarity=0.157 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--cC----HHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS--PD----LVTYST 467 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 467 (514)
.|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555556666666666666666665542 335556666666666667777777666666543211 11 455666
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 510 (514)
+..++...|++++|.+.+++..+ ..|+......+.......
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHH
Confidence 66666777777777777777666 345555555554444433
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.40 E-value=4.2e-06 Score=66.47 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..... +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3456667778888999999999999988764 4577888888889999999999999999988875 4567778888888
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 010236 157 FLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~ 176 (514)
+...|++++|.+.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999888764
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=4e-06 Score=63.05 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNP--KLRFYNILL 154 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li 154 (514)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445567777777888888888888777654 3456677777777777778888887777777653 33 466677777
Q ss_pred HHHHhc-CChhhHHHHHHHHHHcC
Q 010236 155 RGFLKK-GLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 155 ~~~~~~-g~~~~A~~~~~~~~~~~ 177 (514)
.++.+. |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776643
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.38 E-value=2.4e-06 Score=67.92 Aligned_cols=95 Identities=16% Similarity=0.017 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 010236 359 IYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFG 438 (514)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 438 (514)
.+..+...+.+.|++++|...|+++...+. .+...|..+..+|...|++++|...|++..... +.+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344444455555555555555555554432 244445555555555555555555555555432 223444455555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010236 439 VAGKYKEALSVYHLMKD 455 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~ 455 (514)
..|++++|.+.|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.38 E-value=1.2e-05 Score=61.00 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFI 473 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 473 (514)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.... +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34445555556666666666666555442 234555556666666666666666666666554322 4555566666666
Q ss_pred cCCCcchHHHHHHHHHh
Q 010236 474 RAKKFHKVPEIYKQMES 490 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~ 490 (514)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666655
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=1.2e-05 Score=65.52 Aligned_cols=99 Identities=12% Similarity=-0.057 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 010236 356 IGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLIN 435 (514)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 435 (514)
+...+..+...+.+.|++++|...|++..+... .+...|..+...|...|++++|+..+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455677777777788888888888887776642 356677777777778888888888887777653 335667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 010236 436 AFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~ 456 (514)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 788888888888888777654
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=1.2e-05 Score=62.34 Aligned_cols=62 Identities=11% Similarity=-0.000 Sum_probs=35.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 345555556666666666666666655543 33455555555566666666666665555544
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=8.2e-06 Score=64.11 Aligned_cols=97 Identities=6% Similarity=-0.083 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA 471 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 471 (514)
...|..+...+...|++++|...|+...... +.+...|..+..++...|++++|...+++..+.... +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 3444445555555555555555555544432 223445555555555555555555555555543222 34455555555
Q ss_pred HHcCCCcchHHHHHHHHHh
Q 010236 472 FIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 472 ~~~~g~~~~a~~~~~~m~~ 490 (514)
+...|++++|.+.+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555543
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.34 E-value=7.5e-06 Score=69.23 Aligned_cols=123 Identities=9% Similarity=-0.060 Sum_probs=80.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSS----------------ISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
...|..+...+.+.|++++|++.|++..+.. +.+. ..|..+..++...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3457777888888999999999999888753 1122 5666667777777777777777777766
Q ss_pred cCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010236 141 FGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 141 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+...+...++.+++.
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 53 34556666677777777777777777777665432 24455555555555555444444
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=1.2e-05 Score=65.61 Aligned_cols=101 Identities=8% Similarity=-0.034 Sum_probs=84.4
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILL 154 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 154 (514)
.+...|..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345678888888999999999999999988774 4477888888899999999999999999988875 45677888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 010236 155 RGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
.+|.+.|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88999999999999998887753
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=7.8e-06 Score=61.35 Aligned_cols=99 Identities=7% Similarity=0.019 Sum_probs=63.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCc--ChHhHHHH
Q 010236 111 SSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICR--NQETYEIL 188 (514)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 188 (514)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+... . +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHH
Confidence 34456666666777777777777777766653 34555666666666677777777777776666432 2 35566666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHc
Q 010236 189 LDYHVNA-GRLDDTWLIINEMRSK 211 (514)
Q Consensus 189 i~~~~~~-g~~~~A~~~~~~m~~~ 211 (514)
...+... |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666666554
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=1e-05 Score=68.44 Aligned_cols=97 Identities=15% Similarity=0.005 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 010236 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF 472 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 472 (514)
..|..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 567777778888888888888888887753 446777888888888888888888888888765432 566777777777
Q ss_pred HcCCCcchHH-HHHHHHHhC
Q 010236 473 IRAKKFHKVP-EIYKQMESS 491 (514)
Q Consensus 473 ~~~g~~~~a~-~~~~~m~~~ 491 (514)
...++.+++. ..+..|...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777666665 455555543
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=2.3e-05 Score=62.30 Aligned_cols=100 Identities=14% Similarity=0.014 Sum_probs=83.4
Q ss_pred cCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 010236 75 FSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS----SISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFY 150 (514)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 150 (514)
.+...|..+...+.+.|++++|++.|++..+. .|+ ...|..+...+...|++++|+..+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35667888889999999999999999999876 455 6778888888999999999999999988764 4467778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 010236 151 NILLRGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 151 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
..+..++...|++++|.+.|++..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888888888999999999988887754
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=1.5e-05 Score=62.61 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=65.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLR 155 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 155 (514)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44556667777777777777777777766653 3446666777777777777777777777766654 344556666666
Q ss_pred HHHhcCChhhHHHHHHHHHH
Q 010236 156 GFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 156 ~~~~~g~~~~A~~~~~~~~~ 175 (514)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66667777777666666654
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=7e-06 Score=63.05 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667788889999999999999998874 4578888899999999999999999999998875 456778888889999
Q ss_pred hcCChhhHHHHHHHHHHc
Q 010236 159 KKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~ 176 (514)
+.|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.30 E-value=6.2e-06 Score=63.98 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=66.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----hHhHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF--NPK----LRFYN 151 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~ 151 (514)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356667777777888888888888777654 44566777777777777888888877777765431 111 45566
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
.+..++.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666667777777666666654
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.1e-05 Score=73.52 Aligned_cols=196 Identities=10% Similarity=-0.053 Sum_probs=119.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 010236 84 IQYCCKLGDIDEAMALLAQMQALGFHPS----------------SISYASLIEALASVGRTLEADAIFQEMVCFG-FNPK 146 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~ 146 (514)
...+.+.|++++|++.|.++.+..-... ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567888999999999999987632111 1236778888889999999988888776521 1111
Q ss_pred h----HhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--
Q 010236 147 L----RFYNILLRGFLKKGLLGLGSRLLMVMEDM----GICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL-- 215 (514)
Q Consensus 147 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-- 215 (514)
. .+.+.+...+...|+.+.|.++++..... +..+ -..++..+...|...|++++|..++.+....-...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233333344567778887777766432 2111 23466677777777888888887777765431111
Q ss_pred ---ChhhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 216 ---NSFVYGKVIGLYRDNGMWKKAVGIVEEIREM--GLSLD----RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 216 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
...++..+++.|...|++++|..++++.... ....+ ...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1345666667777777777777777765432 11111 2344555555666666766666655543
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=5.6e-06 Score=63.62 Aligned_cols=93 Identities=5% Similarity=-0.092 Sum_probs=59.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC
Q 010236 396 CILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRA 475 (514)
Q Consensus 396 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 475 (514)
..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334455666667777777766666542 335566666666677777777777777766664332 455666666666777
Q ss_pred CCcchHHHHHHHHHh
Q 010236 476 KKFHKVPEIYKQMES 490 (514)
Q Consensus 476 g~~~~a~~~~~~m~~ 490 (514)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766665
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=4.6e-05 Score=60.51 Aligned_cols=96 Identities=6% Similarity=-0.099 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 010236 357 GAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPS----GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNV 432 (514)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 432 (514)
...+..+...+...|++++|...|++..+. .|+ ...|..+...|...|++++|...+++..+.. +.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444444444455555555555544433 222 3344444444555555555555555444431 223444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010236 433 LINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 433 li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+..++...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.24 E-value=2.5e-05 Score=60.47 Aligned_cols=90 Identities=9% Similarity=-0.019 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHH
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNL---VMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD---LVTYSTLMKAF 472 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~ 472 (514)
...+...|++++|.+.|+.+.+.. +.+. ..+..+..++...|++++|...|+++.+.... + ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 344455555555555555555432 1111 34455555555666666666666655543221 2 34455555555
Q ss_pred HcCCCcchHHHHHHHHHh
Q 010236 473 IRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 473 ~~~g~~~~a~~~~~~m~~ 490 (514)
...|++++|...++++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666555
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=0.0001 Score=70.64 Aligned_cols=160 Identities=5% Similarity=-0.014 Sum_probs=72.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCC
Q 010236 224 IGLYRDNGMWKKAVGIVEEIREMGLSLD----------------RQIYNSIIDTFGKYGELVEALEVFEKMQQES-IRPD 286 (514)
Q Consensus 224 l~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~ 286 (514)
.+.+.+.|++++|++.|..+++...... ...+..+...|.+.|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445666777777777777766532111 1124455555666666666666555544310 0111
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhc-----C
Q 010236 287 IV----TWNSLIRWHCKAGDVAKALELFTQMQE----QGFYPD-PKIFITIISCLGELGKWDVIKKNFENMKDR-----G 352 (514)
Q Consensus 287 ~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~ 352 (514)
.. ..+.+-..+...|++++|..++.+... .+..+. ..++..+...+...|++++|..++..+... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 111112222234555555555554432 111111 233444455555555555555555544321 0
Q ss_pred CCCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010236 353 HGKIGAIYAILVDIYGQYGRFRDPEECIAAL 383 (514)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 383 (514)
.+....++..++..|...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1111234444445555555555555555444
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.17 E-value=9.3e-05 Score=57.16 Aligned_cols=95 Identities=16% Similarity=-0.025 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHH
Q 010236 81 NKSIQYCCKLGDIDEAMALLAQMQALGFHPSS---ISYASLIEALASVGRTLEADAIFQEMVCFGFNPK---LRFYNILL 154 (514)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li 154 (514)
..+...+.+.|++++|++.|+++.+.. +.+. ..+..+..++...|++++|...|+.+.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345667778888888888888887753 2223 467777778888888888888888877754 223 45566777
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 010236 155 RGFLKKGLLGLGSRLLMVMEDMG 177 (514)
Q Consensus 155 ~~~~~~g~~~~A~~~~~~~~~~~ 177 (514)
.++.+.|++++|...|+.+.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777888888888887777643
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=3.8e-06 Score=64.11 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=57.3
Q ss_pred hcCCcchHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGL--QPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEA 446 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 446 (514)
..|++++|+..|++..+.+. +.+...+..+...|...|++++|.+.|++..+.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777788888887776531 1234566677777777788888888887777653 33566777777777777888888
Q ss_pred HHHHHHHHHC
Q 010236 447 LSVYHLMKDI 456 (514)
Q Consensus 447 ~~~~~~m~~~ 456 (514)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8877777654
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=3e-05 Score=63.04 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4444555555555555555555555443221 344455555555555555555555555544
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.11 E-value=8.8e-06 Score=79.10 Aligned_cols=119 Identities=11% Similarity=-0.001 Sum_probs=92.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLG 164 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 164 (514)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.. +.+...|..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988874 4468889999999999999999999999999875 456788888999999999999
Q ss_pred hHHHHHHHHHHcCCCcChHhHHHHHHH--HHhcCCHHHHHHHHH
Q 010236 165 LGSRLLMVMEDMGICRNQETYEILLDY--HVNAGRLDDTWLIIN 206 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 206 (514)
+|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887643 234455555555 777888888888887
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=3.2e-05 Score=62.37 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=60.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----h
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFH-PS----SISYASLIEALASVGRTLEADAIFQEMVCFGF-NPK----L 147 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~ 147 (514)
.++..+...+...|++++|++.+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677777888888888888888877653100 11 13566677777777888888877777654210 011 2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010236 148 RFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 148 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
..+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345555566666666666666665554
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=3.1e-05 Score=62.44 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 254 IYNSIIDTFGKYGELVEALEVFEKMQQE----SIR-PDIVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
.+..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444444555555555555555444321 000 012234444445555555555555555443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=5.9e-05 Score=72.89 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=72.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS---------------SISYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
..|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 356777788888888888888888887652 112 3555666666666666666666666666543
Q ss_pred CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHH
Q 010236 143 FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTW 202 (514)
Q Consensus 143 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 202 (514)
+.+...|..+..+|...|++++|...|++..+... .+...+..+...+.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666666666666655432 23345555555555555554443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=5e-05 Score=71.04 Aligned_cols=96 Identities=6% Similarity=-0.113 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALG---------------FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGF 143 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 143 (514)
.|..+...+.+.|++++|++.|++..+.- .+.+..+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 36667777778888888888888776510 01123344444555555555555555555555432
Q ss_pred CCChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010236 144 NPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22344444445555555555555555555444
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=1.4e-05 Score=60.95 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=62.0
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhH
Q 010236 89 KLGDIDEAMALLAQMQALG--FHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
..|++++|+..|++..+.+ -+.+...+..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3577888888888887753 12345667778888888888888888888887765 44567777788888888888888
Q ss_pred HHHHHHHHHc
Q 010236 167 SRLLMVMEDM 176 (514)
Q Consensus 167 ~~~~~~~~~~ 176 (514)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877664
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=8e-05 Score=60.41 Aligned_cols=99 Identities=11% Similarity=-0.004 Sum_probs=69.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQAL-------GF----------HPSSISYASLIEALASVGRTLEADAIFQEMV 139 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 139 (514)
...|......+.+.|++++|+..|++..+. +. +.+...|..+..++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 446777888999999999999999988764 00 1123456666667777777777777777776
Q ss_pred HcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 010236 140 CFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 140 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 176 (514)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 445566666677777777777777777766664
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=2.1e-05 Score=76.46 Aligned_cols=115 Identities=9% Similarity=0.008 Sum_probs=48.4
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010236 369 QYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALS 448 (514)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 448 (514)
+.|++++|.+.+++..+... .+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|.+
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444444321 134444444445555555555555555544432 2234444445555555555555555
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHH--HHcCCCcchHHHHHH
Q 010236 449 VYHLMKDIGISPDLVTYSTLMKA--FIRAKKFHKVPEIYK 486 (514)
Q Consensus 449 ~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 486 (514)
.|+++.+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55554443211 12223333222 444445555554444
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=6.4e-05 Score=72.66 Aligned_cols=124 Identities=10% Similarity=-0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc--------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 010236 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKI--------------GAIYAILVDIYGQYGRFRDPEECIAALKLEG 387 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 387 (514)
...+..+...+.+.|+++.|...|+++++...... ..+|..+..+|.+.|++++|...+++.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44566667777788888888888887776532221 3455555555555566666666555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010236 388 LQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (514)
. .+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++.+.++.+++.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 244455555555555555555555555555432 223344555555555555555444
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.97 E-value=0.00055 Score=67.77 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=114.2
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 89 KLGD-IDEAMALLAQMQALGFHPSSISYASLIEALASVGR----------TLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 89 ~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
+.|+ .++|++.++++.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-...+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 457788888888764 3455667776666666666 788888888887765 55667777777777
Q ss_pred HhcC--ChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc----
Q 010236 158 LKKG--LLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-RLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDN---- 230 (514)
Q Consensus 158 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---- 230 (514)
.+.| +++++.+.++++.+... .|..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence 7777 56888888888877655 56777777777777777 777777777777765433 566666655554442
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010236 231 ----------GMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGE 267 (514)
Q Consensus 231 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 267 (514)
+.++++++.+++.+... +-+...|+-+-..+.+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33456666666655543 3355555555555555444
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=0.0001 Score=58.45 Aligned_cols=60 Identities=23% Similarity=0.096 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPS--------S-----ISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667777788888888888777652 22 1 1555566666666666666666665554
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=0.00029 Score=55.86 Aligned_cols=105 Identities=12% Similarity=0.022 Sum_probs=65.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPN-------------LVMLNVLINAFGVAGKYKEALSVYHLMKDI-----GIS 459 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 459 (514)
....+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++..+. .+.
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444555555555555555443 222 236777777788888888888887777763 113
Q ss_pred cC-HHHH----HHHHHHHHcCCCcchHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 010236 460 PD-LVTY----STLMKAFIRAKKFHKVPEIYKQMES-----SGCTPDRKARQILQ 504 (514)
Q Consensus 460 p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~ 504 (514)
|+ ...| .....++...|++++|+..|++..+ .|+.+......-.+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 43 4466 7777788888888888888887764 35666654444333
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.92 E-value=4e-05 Score=70.80 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010236 322 PKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSGSMFCILANA 401 (514)
Q Consensus 322 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 401 (514)
...+..+...+.+.|++++|...|++.++.. ++.. .+...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556666777778888888888888877653 2211 1222233333322221 1367778888
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCCcch
Q 010236 402 YAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKA-FIRAKKFHK 480 (514)
Q Consensus 402 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 480 (514)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888763 446788889999999999999999999988764322 34455555544 234566778
Q ss_pred HHHHHHHHHh
Q 010236 481 VPEIYKQMES 490 (514)
Q Consensus 481 a~~~~~~m~~ 490 (514)
+.++|++|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888875
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.89 E-value=3.2e-05 Score=71.53 Aligned_cols=147 Identities=9% Similarity=-0.001 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFL 158 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 158 (514)
.|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3455555666667777777777766554 233221 111122222221110 125677777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHccCChHHHH
Q 010236 159 KKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGL-YRDNGMWKKAV 237 (514)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~ 237 (514)
+.|++++|...+++..+... .+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877776543 45667777777888888888888888777654211 33444444443 23345666777
Q ss_pred HHHHHHHHc
Q 010236 238 GIVEEIREM 246 (514)
Q Consensus 238 ~~~~~~~~~ 246 (514)
+.|..+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777654
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=0.00014 Score=67.90 Aligned_cols=138 Identities=7% Similarity=-0.028 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHV 193 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 193 (514)
.+..+...+.+.|++++|++.|++..+.- ++.. .....+.+.+ .. +.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~~----~~----~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGAK----LQ----PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHGG----GH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHHH----HH----HHHHHHHHHHHHHHH
Confidence 46677788888999999999998887520 0000 0000000000 00 023456666666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010236 194 NAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALE 273 (514)
Q Consensus 194 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 273 (514)
+.|++++|++.+++..+... -+...+..+..++...|++++|++.|++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777665532 245566666667777777777777777766653 3355566666666666666665543
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.0021 Score=63.68 Aligned_cols=173 Identities=10% Similarity=-0.094 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-
Q 010236 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGK----------WDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYG- 371 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 371 (514)
.++|++.++++.+.... +...|+.--.++...++ ++++...++.+.+.. +.+..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45667777777764221 33444444444444444 778888888888765 456777777777777888
Q ss_pred -CcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc---------
Q 010236 372 -RFRDPEECIAALKLEGLQPSGSMFCILANAYAQQG-LCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA--------- 440 (514)
Q Consensus 372 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------- 440 (514)
+++++.+.++++.+.+. -+...|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 55888888888888764 36777887777777788 8889999998888775 44777888777776663
Q ss_pred -----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcch
Q 010236 441 -----GKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHK 480 (514)
Q Consensus 441 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 480 (514)
+.++++++.++++....+. |...|..+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5678999999998876544 67788888777777776544
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.80 E-value=0.00094 Score=52.30 Aligned_cols=87 Identities=13% Similarity=0.018 Sum_probs=40.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 010236 225 GLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGK----YGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCK- 299 (514)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 299 (514)
..|...+..++|.++|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333444444555555444433 34444444444444 445555555555544442 34444444444444
Q ss_pred ---cCChHHHHHHHHHHHHCC
Q 010236 300 ---AGDVAKALELFTQMQEQG 317 (514)
Q Consensus 300 ---~g~~~~A~~~~~~m~~~g 317 (514)
.+++++|..+|++..+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=2.6e-05 Score=58.51 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=67.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------hH
Q 010236 76 SGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK-------LR 148 (514)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~ 148 (514)
+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|++.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34567778888888899999999988887764 4467788888888888888888888888888753 43 44
Q ss_pred hHHHHHHHHHhcCChhhHHHHHH
Q 010236 149 FYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
.+..+..++...|+.+.|.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555566666666655554443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.0007 Score=53.04 Aligned_cols=86 Identities=10% Similarity=-0.045 Sum_probs=40.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc--
Q 010236 401 AYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGV----AGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIR-- 474 (514)
Q Consensus 401 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 474 (514)
.|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|..
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 3333344444555555444433 33444444444444 445555555555554432 33444444444444
Q ss_pred --CCCcchHHHHHHHHHhCC
Q 010236 475 --AKKFHKVPEIYKQMESSG 492 (514)
Q Consensus 475 --~g~~~~a~~~~~~m~~~g 492 (514)
.++.++|.+++++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 445555555555555443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=7e-05 Score=56.03 Aligned_cols=94 Identities=14% Similarity=-0.033 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC------HHHH
Q 010236 392 GSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD------LVTY 465 (514)
Q Consensus 392 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~ 465 (514)
...|..+...+...|++++|.+.|++..+.. +.+...|..+..++...|++++|++.+++..+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4456667777778888888888888777653 446677778888888888888888888888764322 2 4456
Q ss_pred HHHHHHHHcCCCcchHHHHHHH
Q 010236 466 STLMKAFIRAKKFHKVPEIYKQ 487 (514)
Q Consensus 466 ~~l~~~~~~~g~~~~a~~~~~~ 487 (514)
..+..++...|+.++|.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6666677777777666554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00022 Score=68.87 Aligned_cols=88 Identities=15% Similarity=0.010 Sum_probs=44.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCC---C---CCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCC-hHhHHH
Q 010236 87 CCKLGDIDEAMALLAQMQALG---F---HPS-SISYASLIEALASVGRTLEADAIFQEMVC-----FGF-NPK-LRFYNI 152 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~---~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~-~~~-~~~~~~ 152 (514)
+..+|++++|+.++++..+.. + .|+ ..+++.+..+|...|++++|..++++.++ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 335566666666666554321 1 111 23556666666666666666666665543 120 111 234455
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 010236 153 LLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 153 li~~~~~~g~~~~A~~~~~~~~ 174 (514)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.00042 Score=52.21 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 374 RDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 374 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
++|.+.|++..+... .+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356666666665432 345566666666777777777777777666543 334556666667777777777777777666
Q ss_pred HH
Q 010236 454 KD 455 (514)
Q Consensus 454 ~~ 455 (514)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00055 Score=48.73 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666677777777777777777776653 3456667777777777777777777777776653 3344555555554
Q ss_pred HHh
Q 010236 157 FLK 159 (514)
Q Consensus 157 ~~~ 159 (514)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.00027 Score=53.29 Aligned_cols=79 Identities=13% Similarity=-0.036 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010236 95 EAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVME 174 (514)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 174 (514)
+|++.|++..+.. +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777776654 4466777788888888888888888888887764 4456677777888888888888888887776
Q ss_pred H
Q 010236 175 D 175 (514)
Q Consensus 175 ~ 175 (514)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.60 E-value=0.00026 Score=68.39 Aligned_cols=98 Identities=10% Similarity=0.044 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-
Q 010236 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-----S-IRPD-IVTWNSLIRWHCKAGDVAKALELFTQMQE-----QGFY- 319 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~- 319 (514)
.+++.|...|...|++++|..++++..+. | -.|+ ..+++.|...|...|++++|+.++++..+ .|..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555554321 1 1111 23455555556666666666665555442 1211
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010236 320 PD-PKIFITIISCLGELGKWDVIKKNFENMKD 350 (514)
Q Consensus 320 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 350 (514)
|+ ..+...+-.++...+.+++|+.++..+.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12223344444555556666666665554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.59 E-value=0.00022 Score=56.44 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=71.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRT----------LEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 56688999999999998875 56788899888888888765 48888888888865 44667888888888
Q ss_pred HhcC-----------ChhhHHHHHHHHHHcCCCcChHhH
Q 010236 158 LKKG-----------LLGLGSRLLMVMEDMGICRNQETY 185 (514)
Q Consensus 158 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~ 185 (514)
...| ++++|.+.|++..+.. |+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHH
Confidence 7764 6777777777776643 444444
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=0.00012 Score=57.91 Aligned_cols=86 Identities=6% Similarity=-0.033 Sum_probs=49.1
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 010236 368 GQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLC----------EQTVKVLQLMEPEGIEPNLVMLNVLINAF 437 (514)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 437 (514)
.+.+.+++|.+.++...+.+. .+...|..+..++...+++ ++|+..|++..+.. +-+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 344556666666666666542 3555666566666555443 36666666665542 22445666666666
Q ss_pred HHcC-----------CHHHHHHHHHHHHH
Q 010236 438 GVAG-----------KYKEALSVYHLMKD 455 (514)
Q Consensus 438 ~~~g-----------~~~~A~~~~~~m~~ 455 (514)
...| ++++|++.|+++.+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 6553 56666666666655
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00094 Score=47.49 Aligned_cols=61 Identities=26% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555544432 22344455555555555555555555555544
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.00083 Score=49.11 Aligned_cols=64 Identities=8% Similarity=0.035 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 391 SGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 391 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
+...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555566666666666666666666665543 22445566666666666666666666666543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0027 Score=46.30 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEM 138 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 138 (514)
|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++.
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444444444444332 222333444444444444444444444433
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.09 E-value=0.0033 Score=45.04 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 425 PNLVMLNVLINAFGVAGK---YKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
.|...+..+..++...++ .++|..++++..+.... ++.....+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666665554433 56666666666664433 555666666666667777777777777665
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.98 E-value=0.011 Score=53.75 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=44.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHH
Q 010236 424 EPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQ 501 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 501 (514)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...|+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 3455566665555555566666666666666543 4555555556666666666666666666665 455555443
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.88 E-value=0.042 Score=57.25 Aligned_cols=150 Identities=11% Similarity=0.204 Sum_probs=85.0
Q ss_pred HhcCCHHHHHH-HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 010236 193 VNAGRLDDTWL-IINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEA 271 (514)
Q Consensus 193 ~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 271 (514)
...+++++|.+ ++..+ ++......++..+.+.|.+++|.++.+.-.. -.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHH
Confidence 45677777765 44111 1122235666677777777777765532111 12334567888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 010236 272 LEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR 351 (514)
Q Consensus 272 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 351 (514)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8776544 2667888888888888888888888887643 233444444566666555544444443
Q ss_pred CCCCcHHHHHHHHHHHHhcCCcchHHHHHH
Q 010236 352 GHGKIGAIYAILVDIYGQYGRFRDPEECIA 381 (514)
Q Consensus 352 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (514)
+. ++....+|.+.|++++|.+++.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 31 2233333444555555555443
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.72 E-value=0.011 Score=46.29 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010236 376 PEECIAALKLEGLQPSGSMFCILANAYAQQG---LCEQTVKVLQLMEPEGIEP--NLVMLNVLINAFGVAGKYKEALSVY 450 (514)
Q Consensus 376 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 450 (514)
+.+.|.+....+. ++..+...+..++++.+ +.++++.+|+...+.. .| +...+-.|.-+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3334443333332 34444444444444444 3334555555444432 12 2233334444445555555555555
Q ss_pred HHHHH
Q 010236 451 HLMKD 455 (514)
Q Consensus 451 ~~m~~ 455 (514)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.70 E-value=0.063 Score=48.94 Aligned_cols=48 Identities=10% Similarity=-0.126 Sum_probs=28.1
Q ss_pred CCCHhhHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 010236 109 HPSSISYASLIEALA--SVG---RTLEADAIFQEMVCFGFNPKLRFYNILLRGF 157 (514)
Q Consensus 109 ~~~~~~~~~li~~~~--~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 157 (514)
+.+...|...+++.. ..+ +..+|+.+|++.++.. +-....|..+.-+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 556777777776554 223 3467888888888764 22334454444444
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.67 E-value=0.022 Score=40.95 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSI-SYASLIEALASVGRTLEADAIFQEMVCFG 142 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g 142 (514)
....+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566778899999999999988764 44567 88888899999999999999999998864
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.11 Score=54.07 Aligned_cols=154 Identities=18% Similarity=0.132 Sum_probs=96.7
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 85 QYCCKLGDIDEAMA-LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 85 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34456788988877 55221 112233677788888899998887653211 113445678999
Q ss_pred hhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 010236 164 GLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 243 (514)
++|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9998886543 4677899999999999999999999987742 334455555566666655555544
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010236 244 REMGLSLDRQIYNSIIDTFGKYGELVEALEVFEK 277 (514)
Q Consensus 244 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 277 (514)
...|. ++....+|.+.|++++|.+++.+
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44431 22333344445555555555443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.47 E-value=0.016 Score=54.91 Aligned_cols=85 Identities=8% Similarity=-0.139 Sum_probs=45.0
Q ss_pred CChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-CcC-hHhHHHHHHH
Q 010236 126 GRTLEADAIFQEMVCF---GFNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CRN-QETYEILLDY 191 (514)
Q Consensus 126 g~~~~A~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~li~~ 191 (514)
|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 01111 244555666666666666666666555432 21 122 3456666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010236 192 HVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~ 210 (514)
|...|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 6667777776666666543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.44 E-value=0.0073 Score=57.28 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010236 253 QIYNSIIDTFGKYGELVEALEVFEKMQQE-----S-IRPD-IVTWNSLIRWHCKAGDVAKALELFTQM 313 (514)
Q Consensus 253 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 313 (514)
.+++.|..+|...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555555555555555555444321 1 0111 233444555555555555555555444
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.42 E-value=0.012 Score=55.84 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=42.2
Q ss_pred cCChHHHHHHHHHHHHcC---CCCC----hHhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-Cc-ChHhHHHHHH
Q 010236 125 VGRTLEADAIFQEMVCFG---FNPK----LRFYNILLRGFLKKGLLGLGSRLLMVMEDM-----GI-CR-NQETYEILLD 190 (514)
Q Consensus 125 ~g~~~~A~~~~~~~~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~li~ 190 (514)
.|++++|.+++++..+.. +.|+ ..+++.+...|...|++++|+.++++..+. |. .| ...+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 445555555555554311 1111 234455555555555555555555554422 11 11 2345566666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010236 191 YHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~ 209 (514)
.|...|++++|..++++..
T Consensus 380 ~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.3 Score=39.18 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=52.3
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010236 262 FGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVI 341 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 341 (514)
..+.|+++.|.++.+++. +...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345566666666655541 556666666666666666666666665532 22333334445555554
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHH
Q 010236 342 KKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAA 382 (514)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (514)
.++-+.....|- ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444333331 33333344445555555555543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.22 E-value=0.019 Score=54.43 Aligned_cols=88 Identities=11% Similarity=-0.012 Sum_probs=45.3
Q ss_pred HhccCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCC-HHHHHH
Q 010236 262 FGKYGELVEALEVFEKMQQES---IRPD----IVTWNSLIRWHCKAGDVAKALELFTQMQEQ-----GF-YPD-PKIFIT 327 (514)
Q Consensus 262 ~~~~~~~~~A~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~~ 327 (514)
+.+.|++++|+.++++..+.. ..|+ ..+++.+...|...|++++|+.++++..+. |. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444556666666665554321 1111 234555666666666666666666655421 11 111 234555
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 010236 328 IISCLGELGKWDVIKKNFENMK 349 (514)
Q Consensus 328 ll~~~~~~~~~~~a~~~~~~~~ 349 (514)
+...|...|++++|..+++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 5566666666666666665554
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.21 E-value=0.038 Score=39.62 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=36.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010236 399 ANAYAQQGLCEQTVKVLQLMEPEGIEPNLV-MLNVLINAFGVAGKYKEALSVYHLMKDIG 457 (514)
Q Consensus 399 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 457 (514)
...+...|++++|.+.+++..+.. +.+.. .|..+..+|...|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556667777777776666542 33445 66666667777777777777777766543
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.03 E-value=0.32 Score=36.62 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=30.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010236 219 VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 219 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
.+...++.+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..++|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344444444555555555555543221 234444555555555555555555555555555543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.91 E-value=0.11 Score=36.85 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010236 128 TLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
.++|..++++.++.. +.++.....+...+.+.|++++|...|+++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444433 23334444444444444444444444444444
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.88 E-value=0.08 Score=38.61 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010236 393 SMFCILANAYAQQGLCEQTVKVLQLMEPEG------IEPNLVMLNVLINAFGVAGKYKEALSVYHLMKD 455 (514)
Q Consensus 393 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 455 (514)
.-+..+...+...|+++.|...|+...+.- -.+....+..+..++.+.|++++|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455666666666666666666654420 022345566666666666666666666666655
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.87 E-value=0.39 Score=36.20 Aligned_cols=137 Identities=17% Similarity=0.084 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHH
Q 010236 90 LGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRL 169 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 169 (514)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..++++.+-+ --|.. .+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHHHH
Confidence 45555556655555542 2444555555555555554444444444322 11111 12222222222
Q ss_pred HHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 010236 170 LMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGL 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 248 (514)
+-.+- .+.......++.+...|+-++-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22211 2333444555556666666666666666432 2345556666666666666666666666666666654
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.81 E-value=0.18 Score=44.07 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-CCh
Q 010236 93 IDEAMALLAQMQALGFHPS---SISYASLIEALAS-----VGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKK-GLL 163 (514)
Q Consensus 93 ~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~ 163 (514)
...|..++++..+. .|+ ...|..+...|.. .|+.++|.+.|++.++.+..-+..++......+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666655 344 4466666666666 367777777777776654212355566666666663 666
Q ss_pred hhHHHHHHHHHHcCCC
Q 010236 164 GLGSRLLMVMEDMGIC 179 (514)
Q Consensus 164 ~~A~~~~~~~~~~~~~ 179 (514)
+.+.+.+++.....+.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777766665444
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.74 E-value=0.21 Score=43.60 Aligned_cols=92 Identities=7% Similarity=-0.032 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhc-CCH
Q 010236 128 TLEADAIFQEMVCFGFNPK---LRFYNILLRGFLK-----KGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNA-GRL 198 (514)
Q Consensus 128 ~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 198 (514)
...|...+++..+. .|+ -..|..+...|.+ .|+.+.|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 354 4578888888887 488888888888888765433477777788877774 888
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHH
Q 010236 199 DDTWLIINEMRSKGFQ--LNSFVYG 221 (514)
Q Consensus 199 ~~A~~~~~~m~~~g~~--~~~~~~~ 221 (514)
+++.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888877655 5544333
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.70 E-value=0.1 Score=38.01 Aligned_cols=65 Identities=9% Similarity=-0.092 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALG------FHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
...+-.+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|+..++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445567777888888888888888766531 1234556777777777777777777777777764
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.45 E-value=0.0001 Score=68.41 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=80.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 010236 77 GNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRG 156 (514)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 156 (514)
+..|..|..+..+.+.+.+|++-|=+. -|+..|..+|.+..+.|.+++-+..+.-.++. ..+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 345666777776667666666554332 24455666677777777777766666555443 2334444566667
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------CCCCC
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK--------------------GFQLN 216 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~~~ 216 (514)
|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+..- .-.-+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777666554433321 144444555555555555555554444332110 00124
Q ss_pred hhhHHHHHHHHHccCChHHHHHH
Q 010236 217 SFVYGKVIGLYRDNGMWKKAVGI 239 (514)
Q Consensus 217 ~~~~~~ll~~~~~~g~~~~a~~~ 239 (514)
+.||-.+-.+|...+.+..|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHh
Confidence 56666666666666665554443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.31 E-value=0.29 Score=37.76 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=53.5
Q ss_pred CCHhhHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCChH-hHHHHHHH------HHhcCChhhHHHHHHHHHHc
Q 010236 110 PSSISYASLIEALASVGRT------LEADAIFQEMVCFGFNPKLR-FYNILLRG------FLKKGLLGLGSRLLMVMEDM 176 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~g~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~~~~~ 176 (514)
.|..+|-..+..+-+.|+. ++.+++|++.... ++|+.. .|..-|.. +...++.+.|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455555555555555555 5555666655543 234311 11111111 11235666677777666554
Q ss_pred CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010236 177 GICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQ 214 (514)
Q Consensus 177 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 214 (514)
+-.- ...|......-.+.|++..|.+++...+..+.+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2211 555555666666667777777777666666544
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.25 E-value=0.23 Score=38.74 Aligned_cols=82 Identities=11% Similarity=0.030 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhhH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVG---RTLEADAIFQEMVCFGFNP--KLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A 166 (514)
.+..+.+-|.+..+.| +++..+...+..++++++ +.++++.+++...+.+ .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455555565555544 356666666666666665 4446666666666543 12 233333444455566666666
Q ss_pred HHHHHHHHH
Q 010236 167 SRLLMVMED 175 (514)
Q Consensus 167 ~~~~~~~~~ 175 (514)
.+.++.+.+
T Consensus 91 ~~y~~~lL~ 99 (152)
T 1pc2_A 91 LKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666655
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.04 E-value=0.001 Score=62.02 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=146.9
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.-|+..|..+|....+.|++++-+..+...++. ..++..=+.|+-+|++.++..+-.+.+ ..|+..-...+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~V 150 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQV 150 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHH
Confidence 346777889999999999999999988877665 345556678999999999876644332 14666666777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC--------------------CCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMG--------------------ICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGF 213 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 213 (514)
.+-|...|.++.|.-+|..+.... -..+..||-.+-.+|...+++.-|.-.--.+.-
T Consensus 151 GDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv--- 227 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV--- 227 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---
T ss_pred HHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---
Confidence 777877787777777766543211 124667899999999999988877655444432
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC------C
Q 010236 214 QLNSFVYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQE-SIRP------D 286 (514)
Q Consensus 214 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p------~ 286 (514)
...-...++..|-..|.+++.+.+++...... ......|+-|.-.|+|-. .++..+.++..-.+ +++. .
T Consensus 228 --hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ 303 (624)
T 3lvg_A 228 --HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQ 303 (624)
T ss_dssp --CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTT
T ss_pred --cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 22223345667888999999999988877432 456778888888887763 34444443332221 2211 2
Q ss_pred HHHHHHHHHHHHhcCChHHHH
Q 010236 287 IVTWNSLIRWHCKAGDVAKAL 307 (514)
Q Consensus 287 ~~~~~~li~~~~~~g~~~~A~ 307 (514)
...|.-++-.|.+-.++|.|.
T Consensus 304 ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 304 AHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTCHHHHHHHHHHHTCHHHHH
T ss_pred HhhHHHHHHHHhcchhHHHHH
Confidence 334777777777777777664
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.99 E-value=1.1 Score=35.90 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=62.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchH
Q 010236 297 HCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDP 376 (514)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 376 (514)
..+.|+++.|.++.+++ .+...|..+.......|+++.|.+.|..... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777776655 2566777777777777777777777766543 33444445556666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 010236 377 EECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLM 418 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 418 (514)
..+-+.....|- ++.....+...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555554444432 445555566667777777776544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.94 E-value=0.17 Score=37.93 Aligned_cols=66 Identities=8% Similarity=-0.063 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 425 PNLVMLNVLINAFGVAGKYKE---ALSVYHLMKDIGIS-PDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
++..+--.+.+++.+.....+ ++.++++..+.+.+ -.....-.|.-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455554444333 45555544443210 1222333344455555555555555555554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.14 E-value=1.3 Score=34.14 Aligned_cols=33 Identities=9% Similarity=-0.014 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010236 427 LVMLNVLINAFGVAGKYKEALSVYHLMKDIGIS 459 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (514)
...|......-.++|+++.|.+++.+....+.+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 333444444444455555555555555554444
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.62 E-value=0.45 Score=35.66 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 010236 373 FRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQ---TVKVLQLMEPEGIEP--NLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 373 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 447 (514)
...+.+-|.+....+. ++..+-..+..++.+..+... ++.+++...+.+ .| +....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555665555554 677777777788888776655 888888887764 23 3445566778899999999999
Q ss_pred HHHHHHHHC
Q 010236 448 SVYHLMKDI 456 (514)
Q Consensus 448 ~~~~~m~~~ 456 (514)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999874
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.55 E-value=0.47 Score=44.24 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCcCHHH
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMK-----DIGISPDLVT 464 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~ 464 (514)
...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|++.. +.|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444555566666766666666665542 4455666666777777777777776666653 3466665543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.32 E-value=0.82 Score=46.23 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCC-hHHHHHHHHHHHHc------CCCC-Ch--
Q 010236 81 NKSIQYCCKLGD-IDEAMALLAQMQALGFHPSSISY--ASLIEALASVGR-TLEADAIFQEMVCF------GFNP-KL-- 147 (514)
Q Consensus 81 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~-~~~A~~~~~~~~~~------g~~~-~~-- 147 (514)
..++..+...|+ ++.|+.+|+++.+.. |...++ ..++..+...++ --+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444555566 588999999998873 433332 233333333322 22355555444321 1111 11
Q ss_pred --------HhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010236 148 --------RFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 148 --------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
.....-.+.+...|+++.|+++-++.....+ -+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1122223455678999999999999887543 457899999999999999999999888763
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.91 E-value=1.3 Score=44.71 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=78.1
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHHcCCCcChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHc------CCCC-Chh----
Q 010236 152 ILLRGFLKKGL-LGLGSRLLMVMEDMGICRNQETYEILLDYHVNAG-RLDDTWLIINEMRSK------GFQL-NSF---- 218 (514)
Q Consensus 152 ~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~~---- 218 (514)
.++..+...++ .+.|..+|+++.+.....+......++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 34444444555 4778888888877543222222233344333333 223455555544321 1111 111
Q ss_pred ------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 219 ------VYGKVIGLYRDNGMWKKAVGIVEEIREMGLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 219 ------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
....-.+.|...|+++.|+++-++....- +.+-.+|..|...|.+.|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122345667899999999999988873 5578899999999999999999999998874
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.46 E-value=1.5 Score=30.98 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 010236 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME 489 (514)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 489 (514)
+..+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444445555555555555555555555555555444
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.23 E-value=0.96 Score=42.09 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCcChHhHHH
Q 010236 115 YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMED-----MGICRNQETYEI 187 (514)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 187 (514)
...++.++...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4456667777788888887777776654 55677788888888888888888888777643 477777665443
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.09 E-value=16 Score=37.93 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=152.2
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 010236 226 LYRDNGMWKKAVGIVEEIREMGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQQESI-------RPDIVTWNSLIRW 296 (514)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-------~p~~~~~~~li~~ 296 (514)
+....|+.++++.+++.....+-..+ ...-..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777778777776554211123 22333334445556655677777766554210 0112222233333
Q ss_pred HHhcCC-hHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHh
Q 010236 297 HCKAGD-VAKALELFTQMQEQGFYPDPKI--FI--TIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDI--YGQ 369 (514)
Q Consensus 297 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~~--~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 369 (514)
.+-.|. -+++.+.+..+.... +... .. ++...+...|+.+....++..+.+.. +..+...++.+ +..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 433443 245666666666532 2211 12 23334556678777777777766542 23333334444 447
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010236 370 YGRFRDPEECIAALKLEGLQPSGSMFC--ILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEAL 447 (514)
Q Consensus 370 ~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 447 (514)
.|+.+.+..+++.+.... .|....-. ++.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 789999999988887631 22222112 23345667788888888998887642 223333333334555567777777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCc-chHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010236 448 SVYHLMKDIGISPDLVTYSTLMKAFIRAKKF-HKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 448 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
++++.+.+.+ .|....-..+.-+....|.. .++..++..+.. .+|..+...-+-++-..+
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 7777666543 45555555555555556654 577888888863 667776666666665544
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.88 E-value=4.1 Score=30.69 Aligned_cols=72 Identities=3% Similarity=-0.102 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCH
Q 010236 424 EPNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDR 497 (514)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 497 (514)
.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 44444444455555554432 34555555555433222233444555566666666666666666655 45543
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.34 E-value=12 Score=35.32 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010236 231 GMWKKAVGIVEEIREM-----GLSLDRQIYNSIIDTFGKYGELVEALEVFEKMQQ 280 (514)
Q Consensus 231 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 280 (514)
|+++.|++.+-.+.+. +..........++..|.+.++++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667777666555532 2334466667777777777777777666655543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.33 E-value=7.6 Score=41.96 Aligned_cols=191 Identities=10% Similarity=0.062 Sum_probs=118.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc----C----------------
Q 010236 293 LIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDR----G---------------- 352 (514)
Q Consensus 293 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~---------------- 352 (514)
++..+...+.++-+.++..-. +.++..--.+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344455556665555443322 224444445566788899999999998765311 0
Q ss_pred --CCCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 010236 353 --HGKIGAIYAILVDIYGQYGRFRDPEECIAALKLEGLQPSG----SMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPN 426 (514)
Q Consensus 353 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 426 (514)
...-..-|..++..+.+.+.++.+.+.-+...+....-+. ..|..+.+++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0111234677888889999999999888877664332222 257888999999999999999998887653 34
Q ss_pred HHHHHHHHHHHHHcCCHHH------------HHHHHHHH-HHC-CCCcCHHHHHHHHHHHHcCCCcchHHHH-HHHHHh
Q 010236 427 LVMLNVLINAFGVAGKYKE------------ALSVYHLM-KDI-GISPDLVTYSTLMKAFIRAKKFHKVPEI-YKQMES 490 (514)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~------------A~~~~~~m-~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 490 (514)
...+..|+...+..|..+. ..+++..- +.. .+...+.-|..|-.-+...|++.+|..+ |+.+.+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5677888888777666544 33333322 111 1111223456666666778888776554 665543
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.89 E-value=13 Score=40.11 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010236 252 RQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI----VTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFIT 327 (514)
Q Consensus 252 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 327 (514)
..-|..++..+-+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345666777777778877777776665543211121 2477788888888888888888877765433 3456667
Q ss_pred HHHHHHccCCHHH
Q 010236 328 IISCLGELGKWDV 340 (514)
Q Consensus 328 ll~~~~~~~~~~~ 340 (514)
++..++..+..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7776666665443
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.29 E-value=15 Score=34.75 Aligned_cols=187 Identities=13% Similarity=0.135 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChHhHHHHHHHHH----hc
Q 010236 91 GDIDEAMALLAQMQAL-----GFHPSSISYASLIEALASVGRTLEADAIFQEMVC-FGFNPKLRFYNILLRGFL----KK 160 (514)
Q Consensus 91 g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~g~~~~~~~~~~li~~~~----~~ 160 (514)
|++++|++-+-.+.+. +..-.......++..|...|+++...+.+..+.+ .|..+ .....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 6788888877666542 2233456678889999999999988887766654 33222 22233333222 12
Q ss_pred CChhhH--HHHHHHHHH--cC-CCc---ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHH
Q 010236 161 GLLGLG--SRLLMVMED--MG-ICR---NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLN-----SFVYGKVIGLY 227 (514)
Q Consensus 161 g~~~~A--~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~ll~~~ 227 (514)
...+.. ..+.+.+.. .| +-. .......|...+...|++.+|.+++.++...-...+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 111111100 00 000 112234556667777777777777777653311111 23444555666
Q ss_pred HccCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 228 RDNGMWKKAVGIVEEIRE----MGLSLD--RQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
...+++..|..++.++.. ...+|+ ...+...+..+...+++.+|.+.|.+..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666777666666665432 111111 1234444555555566666655555443
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.97 E-value=2.7 Score=31.54 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010236 445 EALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALV 508 (514)
Q Consensus 445 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~ 508 (514)
+..+-++.+...++.|++....+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 133 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHHh
Confidence 34444455555566666666666666666666666666666665543 3333445555555543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.30 E-value=7.1 Score=29.82 Aligned_cols=66 Identities=3% Similarity=-0.112 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHh
Q 010236 425 PNLVMLNVLINAFGVAGKY---KEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 425 p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 490 (514)
|+..+--.+.+++.+..+. .+++.+++++.+.+..-.....-.|.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444332221223333444455555555555555555554
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.78 E-value=14 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFE 276 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~ 276 (514)
+......+...|.+.+++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 66677777788888888888887764
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.69 E-value=4.6 Score=30.42 Aligned_cols=69 Identities=14% Similarity=-0.059 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 388 LQPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 388 ~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
..|+..+-..+..++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 35666666666777777664 4567788888776642224556677778889999999999999888874
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.12 E-value=6.3 Score=27.93 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010236 302 DVAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 302 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 334555666666666777788888888888888888888888777776542 112334555443
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.72 E-value=1.9 Score=37.12 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=45.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 400 NAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 400 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
....+.|+++++++....-.+.. +-|...-..++..+|-.|+++.|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567889999998888777764 557777788889999999999999988888764
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.64 E-value=10 Score=28.95 Aligned_cols=68 Identities=15% Similarity=-0.048 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010236 389 QPSGSMFCILANAYAQQGL---CEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDI 456 (514)
Q Consensus 389 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 456 (514)
.|+..+-..+..++.+..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4666666666677777664 4567778877776532223445556777888899999999988888874
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.07 E-value=20 Score=31.79 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=11.7
Q ss_pred HHHHcCCCCChHhHHHHHHHHHh
Q 010236 137 EMVCFGFNPKLRFYNILLRGFLK 159 (514)
Q Consensus 137 ~~~~~g~~~~~~~~~~li~~~~~ 159 (514)
-..+.+.+++......++..+..
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Confidence 33344555555555555555444
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.05 E-value=15 Score=29.98 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 010236 406 GLCEQTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISPD 461 (514)
Q Consensus 406 g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 461 (514)
+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-.+.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335566666666666554333 34556666666666777777777766666655553
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.75 E-value=9.2 Score=30.11 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-------hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALG-FHPSS-------ISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
.+-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++.+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556778889999999999988865431 13332 2567778899999999999999999754
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.76 E-value=12 Score=35.22 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCcChHh--HH
Q 010236 114 SYASLIEALASVGRTLEADAIFQEMVCF--GFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDM---GICRNQET--YE 186 (514)
Q Consensus 114 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 186 (514)
++..+...+.+.|+++.|.+.|.++... +..--...+-.+++.+...+++..+...+.++... +..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5566677777777777777777777653 22233455666677777777777777777666432 21121111 01
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 010236 187 ILLDYHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 187 ~li~~~~~~g~~~~A~~~~~~m~~ 210 (514)
.-...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223456777777777766644
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.82 E-value=15 Score=27.74 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 010236 303 VAKALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVD 365 (514)
Q Consensus 303 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 365 (514)
.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455566666666778888888888888888888888888888776542 222445555543
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.18 E-value=23 Score=33.28 Aligned_cols=61 Identities=5% Similarity=-0.173 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010236 149 FYNILLRGFLKKGLLGLGSRLLMVMEDM--GICRNQETYEILLDYHVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 149 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 209 (514)
+...+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4555666666666666666666666543 222223445555555555666666655555543
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.14 E-value=60 Score=32.11 Aligned_cols=135 Identities=10% Similarity=0.092 Sum_probs=66.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCChhhH
Q 010236 88 CKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF-GFNPKLRFYNILLRGFLKKGLLGLG 166 (514)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A 166 (514)
.+.|+++.+..+...+...-+ ..-..|..+...+ ......+... .+.+. |.+.....-+..+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~---Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTN---FVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHH---HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHH---HHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 456788777777666543211 0111232222222 1123333333 33332 1111122334445666667777666
Q ss_pred HHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 010236 167 SRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQLNSFVYGKVIGLYRDNGMW 233 (514)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 233 (514)
...+.. .+.+...-.....+....|+..+|......+-..|.. .+.....++..+.+.|..
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 654432 2234555555667777788877777766666555422 445555566665554443
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.75 E-value=27 Score=27.46 Aligned_cols=57 Identities=9% Similarity=-0.062 Sum_probs=27.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCcCh-------HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010236 152 ILLRGFLKKGLLGLGSRLLMVMEDMG-ICRNQ-------ETYEILLDYHVNAGRLDDTWLIINEM 208 (514)
Q Consensus 152 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 208 (514)
.-+..+...|.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33455555666666665555543321 11121 13344455555556666665555554
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.33 E-value=17 Score=31.29 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010236 85 QYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCF 141 (514)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 141 (514)
..+.+.|++++|++....-++.. +.|...-..+++.+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45667899999999888777764 667777888889999999999998888887765
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.43 E-value=51 Score=29.50 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 010236 80 YNKSIQYCCKLGDIDEAMALLA 101 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~ 101 (514)
|.++..-|.+++++++|++++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHH
Confidence 4455555666666666666543
No 265
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=72.88 E-value=21 Score=24.92 Aligned_cols=63 Identities=5% Similarity=0.057 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHHh
Q 010236 446 ALSVYHLMKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQME-----SSGCTPDRKARQILQSALVVL 510 (514)
Q Consensus 446 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~l~~a~~~~ 510 (514)
|.++.+++...|+.|+..+..-++..|..-+- + +.++.++.. ..|..|+..+++.+-+.+...
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FEhEvl~k 95 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLSK 95 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 45555666666777777666666666665553 1 333333322 347777777777666655444
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.56 E-value=33 Score=26.54 Aligned_cols=65 Identities=11% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhc
Q 010236 445 EALSVYHLMKDIGISP-DLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (514)
Q Consensus 445 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~~ 513 (514)
++.++|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|-. .|.++...+.+|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~----rL~~~~~~F~~R 148 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE----FLQQQYRLFQTR 148 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH----HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH----HHHHHHHHHHHH
Confidence 3677777777665543 3446677777777788888888888888777777754 444554444443
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.33 E-value=60 Score=29.04 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010236 319 YPDPKIFITIISCLGELGKWDVIKKNF 345 (514)
Q Consensus 319 ~p~~~~~~~ll~~~~~~~~~~~a~~~~ 345 (514)
.-|+.....+...|.+.+++.+|+..|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 346777777788888888888887766
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.20 E-value=68 Score=29.57 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 113 ISYASLIEALASVGRTLEADAIFQEMV 139 (514)
Q Consensus 113 ~~~~~li~~~~~~g~~~~A~~~~~~~~ 139 (514)
.....+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666777666666665543
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.66 E-value=72 Score=28.90 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--YKEALSVYHLMKDIGISPDLVTYSTLMK 470 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 470 (514)
...++.-|...|+.++|.+.++++....+.+ ......+..++-+.++ .+...+++..+.+.|+-+.......+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4556666777777777777777775321111 2223334444433322 3446666666666655544443333333
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.32 E-value=46 Score=26.15 Aligned_cols=50 Identities=8% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010236 411 TVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 411 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
+.++|..|...|+--. +..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444433222 2334444444444455555555554444444444
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.70 E-value=32 Score=24.27 Aligned_cols=51 Identities=18% Similarity=0.207 Sum_probs=27.4
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010236 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 261 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
.+...|++++|..+.+... .||...|-.+-. .+.|..+++...+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455566666665554443 456666654433 35565566655555555443
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.39 E-value=20 Score=32.48 Aligned_cols=76 Identities=11% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC--cchHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010236 429 MLNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK--FHKVPEIYKQMESSGCTPDRKARQILQS 505 (514)
Q Consensus 429 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 505 (514)
..+.++.=|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-+..-...-+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3577888899999999999999998532121 23344555556655443 3457788888888777665544443333
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=65.13 E-value=34 Score=24.21 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=27.0
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010236 261 TFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQG 317 (514)
Q Consensus 261 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 317 (514)
.+...|++++|..+.+... .||...|-.+-. .+.|..+++...+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455566666666554443 456666555433 34555555555555554443
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.16 E-value=58 Score=26.57 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010236 162 LLGLGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (514)
Q Consensus 162 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 215 (514)
...++.++|..|...|+-. -+.-|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3456666666666655432 23445555556666666666666666666555444
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.75 E-value=38 Score=23.94 Aligned_cols=78 Identities=24% Similarity=0.173 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
.-++|..+-+.+...+. ....-..-+..+...|++++|..+.+... .||...|-+|-. .+.|..+.+..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544321 11111112234456666666665554432 455555554432 35555555555555
Q ss_pred HHHHcC
Q 010236 172 VMEDMG 177 (514)
Q Consensus 172 ~~~~~~ 177 (514)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.63 E-value=59 Score=26.13 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=21.8
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 010236 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLL 163 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 163 (514)
++...-...+.++...+..+ +...+..+.. .++..+-...+.++.+.++.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 106 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDE 106 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcH
Confidence 34444444555555555432 2222222222 34444444455555555443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.88 E-value=39 Score=23.88 Aligned_cols=78 Identities=15% Similarity=0.051 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHH
Q 010236 92 DIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLM 171 (514)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 171 (514)
.-++|..+-+.+...+. ....-..-+..+...|++++|..+.+... .||...|-+|-. .+.|..+.+..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554331 11111122234556666666666554443 466665555433 24555555555554
Q ss_pred HHHHcC
Q 010236 172 VMEDMG 177 (514)
Q Consensus 172 ~~~~~~ 177 (514)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.93 E-value=68 Score=25.99 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQ 279 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 279 (514)
+..+-...+.++.+.+. +++...+..+.
T Consensus 156 ~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 44444444455555444 23333333333
No 279
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.49 E-value=1.8e+02 Score=30.40 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Q 010236 150 YNILLRGFLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 150 ~~~li~~~~~~g~~~~A~~~~~~~~~ 175 (514)
|..++++..+.++.+.+.++|+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666777777888888888887764
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.60 E-value=44 Score=27.76 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 010236 410 QTVKVLQLMEPEGIEPN-LVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP 460 (514)
Q Consensus 410 ~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 460 (514)
.+..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33444444444433222 2334444444444555555555555444444333
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.75 E-value=18 Score=31.17 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQALGFHPSSI---SYASLIEALASVGRTLEADAIFQEMVCFGFNPK 146 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 146 (514)
+.+...++.|+++....++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 4455566778776554444 444333321 1112344445556654 3344445554443
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.47 E-value=38 Score=28.14 Aligned_cols=86 Identities=10% Similarity=-0.027 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh--HHHHHHHHH
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS--YASLIEALASVGRTLEADAIFQEMVCFGFNPKLRF--YNILLRGFL 158 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~ 158 (514)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 44555777888888888887777665444321 112333444566654 3444455554443221 112334444
Q ss_pred hcCChhhHHHHHHH
Q 010236 159 KKGLLGLGSRLLMV 172 (514)
Q Consensus 159 ~~g~~~~A~~~~~~ 172 (514)
..|+.+....+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 56666555444443
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.25 E-value=1.6e+02 Score=29.24 Aligned_cols=46 Identities=26% Similarity=0.311 Sum_probs=28.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASV 125 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 125 (514)
..| .+|-.|.|+|++++|.++.++.... +.--...+...+..++..
T Consensus 154 p~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 154 PIW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp EHH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 367 5888889999999999999776532 111123566666777643
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.73 E-value=62 Score=27.23 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 010236 82 KSIQYCCKLGDIDEAMALLAQMQA 105 (514)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~ 105 (514)
--++.+....++++|++++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356778888899999888887654
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=53.12 E-value=91 Score=25.33 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=22.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
+-.+.+.|+-++-+|.+.| .|.-..-..++.+....|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4467788888888888877 554444444444554444
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.50 E-value=29 Score=29.47 Aligned_cols=57 Identities=18% Similarity=0.076 Sum_probs=36.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHH--hcCChHHHHHHHHHHH
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSI-------SYASLIEALA--SVGRTLEADAIFQEMV 139 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~~~ 139 (514)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3445567899999888888887777555533 2344444432 5677777777766543
No 287
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=49.94 E-value=27 Score=22.32 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 010236 79 SYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR 127 (514)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 127 (514)
.++.++..+++..-+++++..++++.+.| ..+..+|.--.+.+++..-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888887 5677777777777665443
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.00 E-value=46 Score=28.41 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=40.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHh--HHHHHHH
Q 010236 117 SLIEALASVGRTLEADAIFQEMVCFGFNPKLR---FYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQET--YEILLDY 191 (514)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~li~~ 191 (514)
+.+...++.|+.+....+ .+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 344455667776554444 4444433322 1123444555667654 3444445554443211 1123333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC
Q 010236 192 HVNAGRLDDTWLIINEMRSKGFQLN 216 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~~~g~~~~ 216 (514)
.+..|+.+ +++.+.+.|..++
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVN 99 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCHH----HHHHHHHcCCCCC
Confidence 44455544 3444445555443
No 289
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=48.23 E-value=1.1e+02 Score=24.82 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=21.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
+-.+.+.|+-++-+|++.|-.|.-..-..++.+....|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34567777777777777665554444444444444433
No 290
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.23 E-value=83 Score=23.45 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR--TLEADAIFQEMVCFGFNP 145 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~~ 145 (514)
.+.++.-|...|+.++|.+.++++.... .........+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4678899999999999999999986211 1122334444445544432 355667777777665433
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.08 E-value=63 Score=24.96 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR--TLEADAIFQEMVCFGFN 144 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~ 144 (514)
.+.+|.-|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4678899999999999999999985211 1123334444445544322 34566777777665543
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.84 E-value=84 Score=23.41 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--YKEALSVYHLMKDIGIS 459 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 459 (514)
...++.-|...|+.++|.+.++++....+. ...+...+..++-+.+. .+....++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 556777777788888888888877522111 11223333334443322 34556666666655544
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.70 E-value=65 Score=26.63 Aligned_cols=58 Identities=9% Similarity=-0.001 Sum_probs=28.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHh--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCc
Q 010236 119 IEALASVGRTLEADAIFQEMVCFGFNPKLRF--YNILLRGFLKKGLLGLGSRLLMVMEDMGICR 180 (514)
Q Consensus 119 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 180 (514)
+...+..|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~ 72 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASP 72 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCc
Confidence 3344556777777777766665554433221 112333444555543 333444444433
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.63 E-value=1.4e+02 Score=25.16 Aligned_cols=89 Identities=9% Similarity=-0.014 Sum_probs=43.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc--CCCC----ChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHHH
Q 010236 118 LIEALASVGRTLEADAIFQEMVCF--GFNP----KLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLDY 191 (514)
Q Consensus 118 li~~~~~~g~~~~A~~~~~~~~~~--g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 191 (514)
-+..+....++++|.++.++..+. +.++ ........+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788889999999998877642 2221 111112222222222222233333333322 2333444445555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 010236 192 HVNAGRLDDTWLIINEMR 209 (514)
Q Consensus 192 ~~~~g~~~~A~~~~~~m~ 209 (514)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 556666666666555443
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.41 E-value=1.1e+02 Score=23.67 Aligned_cols=51 Identities=10% Similarity=0.043 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCCCc-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010236 165 LGSRLLMVMEDMGICR-NQETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 215 (514)
++.++|..|...|+-. -+.-|......+...|++.+|.++|..-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3566666666655432 23445555555666666666666666666554444
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.51 E-value=29 Score=28.79 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=21.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCChHHHHHH
Q 010236 86 YCCKLGDIDEAMALLAQMQALGFHPSSI--SYASLIEALASVGRTLEADAI 134 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~ 134 (514)
..++.|+++....++ +.|..++.. .-.+.+...+..|+.+-+..+
T Consensus 15 ~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 15 KATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 346677766555444 444333321 112234455566766544333
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.28 E-value=1.5e+02 Score=26.18 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCcCHH
Q 010236 395 FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--YKEALSVYHLMKDIGISPDLV 463 (514)
Q Consensus 395 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 463 (514)
...++.-|...|+.++|.+.++++....+.+ ......+..++-+.++ .+...+++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3455666666777777777777765211111 1222333333333222 344556666666555443333
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.66 E-value=88 Score=27.62 Aligned_cols=68 Identities=12% Similarity=0.243 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC--cchHHHHHHHHHhCCCCCCHH
Q 010236 430 LNVLINAFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAKK--FHKVPEIYKQMESSGCTPDRK 498 (514)
Q Consensus 430 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 498 (514)
...++.=|...|+.++|.+.++++..-... ...+...+..++-+.++ .+....++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 467888888999999999999988521111 12334444455554433 344667787777766655543
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.94 E-value=1.1e+02 Score=23.23 Aligned_cols=55 Identities=7% Similarity=0.013 Sum_probs=25.0
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010236 453 MKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.---++.|..
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 344455544321 22223333333 45566666666555544455444444444433
No 300
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.85 E-value=81 Score=24.35 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCcCHH
Q 010236 394 MFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGK--YKEALSVYHLMKDIGISPDLV 463 (514)
Q Consensus 394 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 463 (514)
....++.-|...|+.++|...++++....+. ...+...+..++-+.++ .+....++..+.+.|+-+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567788888888888888888887532111 12233344444444322 345666777776665544333
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.62 E-value=1.1e+02 Score=23.16 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010236 453 MKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.--.++.|..
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 34455554432 122333333444455566666666555444455444444444433
No 302
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=41.35 E-value=1.5e+02 Score=24.35 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
+-.+.+.|+-++-+|++.|-.|.-..-..++.+....|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34567777777777777665554444444444444444
No 303
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.98 E-value=1.4e+02 Score=24.01 Aligned_cols=80 Identities=14% Similarity=0.043 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010236 250 LDRQIYNSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVAKALELFTQMQEQGFYPDPKIFITII 329 (514)
Q Consensus 250 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 329 (514)
++..+-...+.++.+.+.. ++...+..+.+ .++...-...+.++.+.+. .++...+..+.+. ++..+-...+
T Consensus 124 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~ 195 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAV 195 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHH
Confidence 3444444555555555543 23444444443 2455555566666666665 4555556665543 4555555556
Q ss_pred HHHHccCC
Q 010236 330 SCLGELGK 337 (514)
Q Consensus 330 ~~~~~~~~ 337 (514)
.++.+.+.
T Consensus 196 ~aL~~~~~ 203 (211)
T 3ltm_A 196 NYLETHKS 203 (211)
T ss_dssp HHHHC---
T ss_pred HHHHhcCC
Confidence 66555443
No 304
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=40.52 E-value=2.4e+02 Score=26.48 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=25.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 010236 299 KAGDVAKALELFTQMQEQGFYPDPKIFITIISCLGELG 336 (514)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 336 (514)
+.++.+.|+.++.+|.+.|..|....-..+..+....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 45788899999999998887665544444444554444
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.45 E-value=82 Score=20.89 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=35.1
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCC-CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhh
Q 010236 452 LMKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMESSGCTPDRKARQILQSALVVLE 511 (514)
Q Consensus 452 ~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~ 511 (514)
.+.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455666655543 34445555443 45667777777777665666666666666665543
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.08 E-value=1.3e+02 Score=23.04 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCC-CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010236 453 MKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.--.++.|..
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 64 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDD 64 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 445555544332 22334444444 455666666666665555555554444444443
No 307
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.01 E-value=1.2e+02 Score=22.68 Aligned_cols=57 Identities=11% Similarity=0.203 Sum_probs=30.3
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCC-CcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 010236 453 MKDIGISPDLVTYSTLMKAFIRAK-KFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (514)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 510 (514)
+.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---++.|...
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 44556555443 223344444444 5566777777776665555665555555555443
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.13 E-value=2.1e+02 Score=25.30 Aligned_cols=128 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc---CCH
Q 010236 367 YGQYGRFRDPEECIAALKLEGLQPSGSMFCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVA---GKY 443 (514)
Q Consensus 367 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~ 443 (514)
+...|.+++|...|+.+. +...+.......+.+++.+++....+ +....-+..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhhc
Q 010236 444 KEALSVYHLMKDIGISPDLV--TYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQR 513 (514)
Q Consensus 444 ~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~~ 513 (514)
...+++---+..-.+.|... ++..-+....+.+++..|..+-+++++ +.|+.....-.-+.+...++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLe--l~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLK--IISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhcC
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.51 E-value=1.4e+02 Score=22.89 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=29.5
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 010236 453 MKDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVL 510 (514)
Q Consensus 453 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~ 510 (514)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.--.++.|...
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 74 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE 74 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 44556554332 2334444555555666777777776655555555555555544443
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.84 E-value=1.5e+02 Score=23.20 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHcCCCcC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010236 165 LGSRLLMVMEDMGICRN-QETYEILLDYHVNAGRLDDTWLIINEMRSKGFQL 215 (514)
Q Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 215 (514)
.+.++|..|...|+-.. +..|......+-..|++.+|.++|..-++.+-.|
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 35556666666654322 3345555555566666666666666666655444
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.38 E-value=1.3e+02 Score=23.08 Aligned_cols=32 Identities=13% Similarity=0.026 Sum_probs=13.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010236 188 LLDYHVNAGRLDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 188 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
++..+...+..-.|.++++.+.+.+...+..|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aT 63 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISS 63 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhh
Confidence 33333333334444444544444443333333
No 312
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.16 E-value=2.9e+02 Score=25.36 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010236 258 IIDTFGKYGELVEALEVFEKMQQESIRPD-----IVTWNSLIRWHCKAGDVAKALELFTQMQ 314 (514)
Q Consensus 258 li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 314 (514)
++..|...|++.+|.+++.++.+.=...| ...+-.-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555555555555555555443200001 1223334445555566666655555543
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.90 E-value=1.3e+02 Score=22.88 Aligned_cols=15 Identities=13% Similarity=-0.119 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHcC
Q 010236 198 LDDTWLIINEMRSKG 212 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g 212 (514)
.-.|.++++.+.+.+
T Consensus 37 ~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 37 HPTADDIYKALEGKF 51 (145)
T ss_dssp CCCHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHhC
Confidence 333444444444433
No 314
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.86 E-value=2e+02 Score=23.38 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 010236 82 KSIQYCC---KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-----TLEADAIFQEMVCFGFN 144 (514)
Q Consensus 82 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~g~~ 144 (514)
.+|+++. |-.+.+.|+-.+.+|.+.| .|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3555553 4578888888888888888 5544444444444444332 22344445555555543
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.18 E-value=1.7e+02 Score=22.79 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=24.8
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCCcchHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 010236 454 KDIGISPDLVTYSTLMKAFIRAKKFHKVPEIYKQMESS--GCTPDRKARQILQSALV 508 (514)
Q Consensus 454 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~a~~ 508 (514)
.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.|.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~ 80 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLE 80 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHH
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence 3445544332 233344444445555566666655554 44444444433333333
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.06 E-value=66 Score=25.65 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHH
Q 010236 86 YCCKLGDIDEAMALLA 101 (514)
Q Consensus 86 ~~~~~g~~~~A~~~~~ 101 (514)
..+..|+.+....++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3456677776666664
No 317
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.76 E-value=35 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH
Q 010236 90 LGDIDEAMALLAQMQALG-FHPSS 112 (514)
Q Consensus 90 ~g~~~~A~~~~~~m~~~~-~~~~~ 112 (514)
.-+++.|+..|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 348999999999998765 55544
No 318
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.59 E-value=1.9e+02 Score=22.83 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---hHHHHHHHHHh-c
Q 010236 87 CCKLGDIDEAMALLAQMQALGFHPSSI--SYASLIEALASVGRTLEADAIFQEMVCFGFNPKLR---FYNILLRGFLK-K 160 (514)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~~~~-~ 160 (514)
.++.|+++....+++. +.. ... .-.+.+...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. .
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~-~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYE-DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSS-CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHhc----Ccc-cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3577888876666543 211 111 11233444456666666667777788887666543 22333322222 1
Q ss_pred CChhhHHHHHHHHHHcCCCcChHh---HHHHHHHHHhcCCH-HHHHHHHHHHHH-cCCCCC
Q 010236 161 GLLGLGSRLLMVMEDMGICRNQET---YEILLDYHVNAGRL-DDTWLIINEMRS-KGFQLN 216 (514)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~-~~A~~~~~~m~~-~g~~~~ 216 (514)
.+.....++.+.+.+.|..++... .++.+...+..+.. ..-..+++.+.+ .|..++
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 223344566677777776554321 11223222333322 233445555665 555544
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.46 E-value=1.9e+02 Score=22.61 Aligned_cols=52 Identities=6% Similarity=0.014 Sum_probs=32.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHH-H-----HHcCCCcchHHHHHHHHHh
Q 010236 439 VAGKYKEALSVYHLMKDIGISP--DLVTYSTLMK-A-----FIRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~~ 490 (514)
..|++-+|.++|+..=.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777764433334 4556666666 2 2346777777777777764
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.19 E-value=89 Score=28.06 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHH
Q 010236 220 YGKVIGLYRDNGMWKKAVGIVEEI 243 (514)
Q Consensus 220 ~~~ll~~~~~~g~~~~a~~~~~~~ 243 (514)
...++.-|...|+.++|...++++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344555555666666666655555
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.15 E-value=92 Score=26.86 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=9.6
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 010236 84 IQYCCKLGDIDEAMALLA 101 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~ 101 (514)
+...++.|+.+-+..+++
T Consensus 35 L~~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 344456677665544443
No 322
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.43 E-value=3.7e+02 Score=25.76 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--hhH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 78 NSYNKSIQYCCKLGDIDEAMALLAQMQALGF-HPSS--ISY-ASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~-~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
..+|.+++.|...+.++.|..+..+..--.. .+|. ..| -.+...+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566666667766777777766666531000 0111 111 1233445556666666666666554
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.42 E-value=1.9e+02 Score=22.50 Aligned_cols=50 Identities=10% Similarity=-0.034 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHHcCCCC--ChHhHHHHHH-H-----HHhcCChhhHHHHHHHHHH
Q 010236 126 GRTLEADAIFQEMVCFGFNP--KLRFYNILLR-G-----FLKKGLLGLGSRLLMVMED 175 (514)
Q Consensus 126 g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~~~~ 175 (514)
|++-+|.++++..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666666666655433233 3344444544 1 1234555555555555443
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.90 E-value=94 Score=26.79 Aligned_cols=44 Identities=7% Similarity=-0.197 Sum_probs=19.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHH
Q 010236 121 ALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSR 168 (514)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 168 (514)
..+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..
T Consensus 37 ~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 37 YAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp HHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred HHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 344566665444443 33433333222233444455666554433
No 325
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.50 E-value=2.3e+02 Score=22.99 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=22.0
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 010236 83 SIQYCC---KLGDIDEAMALLAQMQALGFHPSSISYASLIEA 121 (514)
Q Consensus 83 li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 121 (514)
+|+++. |-.+.+.|+-.+-+|++.|-.|....-..++-+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444443 446777777777777777654443333333333
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.44 E-value=1.3e+02 Score=22.57 Aligned_cols=21 Identities=5% Similarity=-0.102 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHcCCCCChh
Q 010236 198 LDDTWLIINEMRSKGFQLNSF 218 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~ 218 (514)
.-.|.++++.+.+.+...+..
T Consensus 34 ~~sa~ei~~~l~~~~~~is~a 54 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLA 54 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHH
T ss_pred CCCHHHHHHHHHhhCCCCCHH
Confidence 334444444444443333333
No 327
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.44 E-value=5.1e+02 Score=27.03 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=43.5
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHHcC----CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHHH
Q 010236 118 LIEALASVGR---TLEADAIFQEMVCFG----FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILLD 190 (514)
Q Consensus 118 li~~~~~~g~---~~~A~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 190 (514)
++...|..|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..... .+..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Confidence 3344444443 345666666554421 334432 22333334556655555556655553 23334455666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010236 191 YHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~ 210 (514)
+++...+.....++++....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTC
T ss_pred HhCCCCCHHHHHHHHHHHhC
Confidence 66666666665565555543
No 328
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=29.02 E-value=2.2e+02 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010236 428 VMLNVLINAFGVAGKYKEALSVYHLM 453 (514)
Q Consensus 428 ~~~~~li~~~~~~g~~~~A~~~~~~m 453 (514)
..|+.+...|...|+.++|+..+..-
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 45677778888899999999887643
No 329
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=28.30 E-value=49 Score=20.67 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 010236 94 DEAMALLAQMQALGFHPSSISYASLIEAL 122 (514)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 122 (514)
++|.+.|-+|++..-.++..||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555565555443334445555555555
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.83 E-value=1.1e+02 Score=25.02 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=29.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPK 146 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 146 (514)
.+...++.|+++....+++.-...-..++..-++.+. ..+..|+.+- ++.+.+.|..++
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~~----v~~Ll~~g~~~~ 67 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTEI----VEFLLQLGVPVN 67 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHHH----HHHHHHTTCCSC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHHH----HHHHHHhCCCCC
Confidence 4556677888888887776532211122222233333 3345555543 344445554443
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.58 E-value=1.1e+02 Score=22.37 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=26.1
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010236 99 LLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVC 140 (514)
Q Consensus 99 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (514)
+|+.+....+.|++..-..-+..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555544444445555677788888888877765
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.50 E-value=1.4e+02 Score=22.82 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhh
Q 010236 198 LDDTWLIINEMRSKGFQLNSFV 219 (514)
Q Consensus 198 ~~~A~~~~~~m~~~g~~~~~~~ 219 (514)
.-.|.++++.+.+.+...+..|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aT 54 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLAT 54 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHH
T ss_pred CCCHHHHHHHHHHhCCCCCHHH
Confidence 3344444444444433333333
No 333
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.45 E-value=1.5e+02 Score=22.25 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=21.0
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010236 468 LMKAFIRAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVV 509 (514)
Q Consensus 468 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~ 509 (514)
++..+...+..-.|.++++.+.+.+...+..|.--.++.|..
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 344444444455566666666555544455544444444443
No 334
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=25.95 E-value=1.7e+02 Score=20.47 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 010236 411 TVKVLQLMEPEGIEPNLVMLNVLINAFGVAG 441 (514)
Q Consensus 411 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 441 (514)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444555555555555555555444
No 335
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.84 E-value=2.4e+02 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=11.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 010236 191 YHVNAGRLDDTWLIINEMRSKGFQLN 216 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~~g~~~~ 216 (514)
..+..|+.+.-.++.+-+.+.|..++
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 33344444444444444455544443
No 336
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=25.78 E-value=2.3e+02 Score=27.23 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010236 251 DRQIYNSIIDTFGKYGELVEALEVFEKMQQESI 283 (514)
Q Consensus 251 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 283 (514)
+......|-..|.+.+++-+|-+++..+-..+.
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 334455566666777777777777777665543
No 337
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=25.72 E-value=4.9e+02 Score=25.63 Aligned_cols=336 Identities=9% Similarity=-0.018 Sum_probs=149.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGL 162 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 162 (514)
-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..| ......++.++..+.+.|.
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 34455556666665554432 13344444555666667777766666666665555 3344556666666665554
Q ss_pred hhh--HHHHHHHHHHcCCCcChHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCChhh---HHHHHHHHH
Q 010236 163 LGL--GSRLLMVMEDMGICRNQETYEILLDYHVNAGRLDDTWLIINEMRSK---------GFQLNSFV---YGKVIGLYR 228 (514)
Q Consensus 163 ~~~--A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~~~~~~---~~~ll~~~~ 228 (514)
+.. ..+=++.+...| +...-..++... . .+.....+.+..+... ...++... +...+.-+.
T Consensus 152 lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHH
Confidence 432 222222222221 111111111100 0 0000000001111110 01112111 111122222
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 010236 229 DNGMWKKAVGIVEEIREMGLSLDRQIY----NSIIDTFGKYGELVEALEVFEKMQQESIRPDIVTWNSLIRWHCKAGDVA 304 (514)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 304 (514)
+ .+.+.|...+....+.. ..+.... ..+...+...+...++...+....... .+.....-.+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHH
Confidence 2 36677777777765433 2232222 222223333442445555555544432 23322333333344667888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 010236 305 KALELFTQMQEQGFYPDPKIFITIISCLGELGKWDVIKKNFENMKDRGHGKIGAIYAILVDIYGQYGRFRDPEECIAALK 384 (514)
Q Consensus 305 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 384 (514)
.|...|..|..... ......-.+..++...|+.++|..+|..+.+. . ..|..+. ..+.|..-.. .
T Consensus 303 ~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-~------ 367 (618)
T 1qsa_A 303 GLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-K------ 367 (618)
T ss_dssp HHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-C------
T ss_pred HHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-C------
Confidence 88887777754321 13444445566667777888887777777642 1 2243332 1222321100 0
Q ss_pred HcCCCC---CHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010236 385 LEGLQP---SGSM---FCILANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYH 451 (514)
Q Consensus 385 ~~~~~~---~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 451 (514)
...+.+ .... -...+..+...|....|...+..+.+. .+......+.......|.++.++....
T Consensus 368 ~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 000000 0000 112234566778888888877776653 233333344445556677766655443
No 338
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.59 E-value=2.8e+02 Score=22.74 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=38.3
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-----hHHHHHHHHHHHHcCCC
Q 010236 82 KSIQYCC---KLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGR-----TLEADAIFQEMVCFGFN 144 (514)
Q Consensus 82 ~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~g~~ 144 (514)
.+|+++. |-.+.+.|+-.+-+|.+.|-.|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4666664 457899999999999988865554444444444443332 23455555555556643
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.51 E-value=1.6e+02 Score=21.84 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 010236 436 AFGVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAFIRAK 476 (514)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 476 (514)
.+...+..-.|.++++.+.+.+...+..|.--.++.+...|
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333344444445554444443334444333344444444
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.36 E-value=1.4e+02 Score=23.25 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010236 191 YHVNAGRLDDTWLIINEMRS 210 (514)
Q Consensus 191 ~~~~~g~~~~A~~~~~~m~~ 210 (514)
.+...+..-.|.++++.+.+
T Consensus 41 ~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 41 TLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHSCCSCBCHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHh
Confidence 33333333344444444433
No 341
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.85 E-value=53 Score=28.17 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=26.1
Q ss_pred cCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhh
Q 010236 474 RAKKFHKVPEIYKQMESSGCTPDRKARQILQSALVVLEQ 512 (514)
Q Consensus 474 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~a~~~~~~ 512 (514)
..|+.+.+.+.++++.+.|..|.......+..++...|+
T Consensus 48 ~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG~ 86 (258)
T 2i2x_B 48 FEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVIR 86 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777766666666666666554
No 342
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.76 E-value=1.2e+02 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHcC
Q 010236 200 DTWLIINEMRSKG 212 (514)
Q Consensus 200 ~A~~~~~~m~~~g 212 (514)
.|.++++.+.+.+
T Consensus 35 ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 35 TPDDILGEVRKTA 47 (145)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHhhC
Confidence 3444444444433
No 343
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.64 E-value=85 Score=25.75 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH---hHHHHHHH
Q 010236 83 SIQYCCKLGDIDEAMALLAQMQALGFHPSSIS---YASLIEALASVGRTLEADAIFQEMVCFGFNPKLR---FYNILLRG 156 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~---~~~~li~~ 156 (514)
.+...++.|+.+-+.. +.+.|..++... -.+.+...+..|+.+- .+.+.+.|..++.. ..+ .+..
T Consensus 45 ~L~~A~~~~~~~~v~~----Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~l~~ 115 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKY----YISKGAIVDQLGGDLNSTPLHWATRQGHLSM----VVQLMKYGADPSLIDGEGCS-CIHL 115 (240)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHH
T ss_pred HHHHHHHhCCHHHHHH----HHHcCCcchhhcCCcCCChhHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCC-HHHH
Confidence 4556677788755444 444443332111 1123344445566543 34444555444322 222 3344
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCc
Q 010236 157 FLKKGLLGLGSRLLMVMEDMGICR 180 (514)
Q Consensus 157 ~~~~g~~~~A~~~~~~~~~~~~~~ 180 (514)
.+..|+.+ +++.+.+.|..+
T Consensus 116 A~~~~~~~----~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 116 AAQFGHTS----IVAYLIAKGQDV 135 (240)
T ss_dssp HHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHcCHHH----HHHHHHhcCCCc
Confidence 44556654 334444444433
No 344
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.27 E-value=1e+02 Score=24.35 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=43.4
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLE 130 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 130 (514)
.|....++.++..++...-+++++..+.++...| ..+..+|.--++.+++...+..
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 3455677899999999888999999999998888 5677888877777776544433
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.06 E-value=4.7e+02 Score=27.44 Aligned_cols=88 Identities=8% Similarity=0.055 Sum_probs=61.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-----------------
Q 010236 398 LANAYAQQGLCEQTVKVLQLMEPEGIEPNLVMLNVLINAFGVAGKYKEALSVYHLMKDIGISP----------------- 460 (514)
Q Consensus 398 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------------- 460 (514)
++..|...|.++-|.++..-+. .+...--.+..+|...|++++|.+.|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 5667777888877665443332 2333334577888999999999999987631 1110
Q ss_pred ------CHHHHHHHHHHHHcCCCcchHHHHHHHHHhC
Q 010236 461 ------DLVTYSTLMKAFIRAKKFHKVPEIYKQMESS 491 (514)
Q Consensus 461 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 491 (514)
...-|..++..+-+.+-++-+.++-+..++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1126788888999999999999999998875
No 346
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.61 E-value=3.3e+02 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=33.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 010236 254 IYNSIIDTFGKYGELVEALEVFEKMQQESIRPDI----VTWNSLIRWHCKAG 301 (514)
Q Consensus 254 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g 301 (514)
-|..++..+-+.+.++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888888999999988888877754222233 35666777666544
No 347
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.24 E-value=1.3e+02 Score=17.88 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 010236 91 GDIDEAMALLAQMQALGFHPS 111 (514)
Q Consensus 91 g~~~~A~~~~~~m~~~~~~~~ 111 (514)
.++..|+++++.+.+.|-.|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 467778888888877764443
No 348
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=22.19 E-value=2.8e+02 Score=21.51 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred ccCcchHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHH
Q 010236 74 EFSGNSYNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNIL 153 (514)
Q Consensus 74 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 153 (514)
.|-...++..+..+.+...-. .++-+++.+.|+.+ +....+++.+.+.|+-.|...-...
T Consensus 14 ~~~~~a~~~Al~~Ls~r~~s~--~EL~~KL~~kg~~~------------------e~Ie~vl~~l~~~g~ldD~rfA~~~ 73 (162)
T 3dfg_A 14 FKEQTPVQRALGLLVHREHSK--KELNRKLQARGIEP------------------EAAQAAVERLAGEGWQDDVRFAASV 73 (162)
T ss_dssp ---CCHHHHHHHHHHHSCCCH--HHHHHHHHHTTCCH------------------HHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred chHHHHHHHHHHHhhchhhhH--HHHHHHHHhcCCCH------------------HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344456777777777654433 25566677766532 2344566666667766555555555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCC
Q 010236 154 LRGFLKKGLLGLGSRLLMVMEDMGIC 179 (514)
Q Consensus 154 i~~~~~~g~~~~A~~~~~~~~~~~~~ 179 (514)
++...+.| .....+-.++...|+.
T Consensus 74 v~~~~~~~--~G~~~I~~eL~~KGI~ 97 (162)
T 3dfg_A 74 VRNRASSG--YGPLHIRAELGTHGLD 97 (162)
T ss_dssp HHHHHTTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHcc--ccHHHHHHHHHHcCCC
Confidence 55554432 2335666777777873
No 349
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.69 E-value=3e+02 Score=21.70 Aligned_cols=81 Identities=9% Similarity=-0.116 Sum_probs=36.0
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhHHHHH
Q 010236 110 PSSISYASLIEALASVGRTLEADAIFQEMVCFGFNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETYEILL 189 (514)
Q Consensus 110 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 189 (514)
+|...-...+.++...+..+. ...+..+.. .++..+-...+.++.+.|+.+....+.+ +.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHH
Confidence 344444444444444444322 222222222 3455555555555666555433322222 222 14555555555
Q ss_pred HHHHhcCCH
Q 010236 190 DYHVNAGRL 198 (514)
Q Consensus 190 ~~~~~~g~~ 198 (514)
.++.+.++.
T Consensus 98 ~aL~~~~~~ 106 (201)
T 3ltj_A 98 VALGQIGDE 106 (201)
T ss_dssp HHHHHHCCG
T ss_pred HHHHHhCcH
Confidence 555555543
No 350
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.35 E-value=1.7e+02 Score=24.41 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=30.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHh-------HHHHHHHHH--hcCChhhHHHHHHHHH
Q 010236 120 EALASVGRTLEADAIFQEMVCFGFNPKLRF-------YNILLRGFL--KKGLLGLGSRLLMVME 174 (514)
Q Consensus 120 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~~ 174 (514)
...++.|+.+....+++.+.+.|...+... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566777777777777766665544332 233333332 4566666666665543
No 351
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.33 E-value=88 Score=24.86 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=6.5
Q ss_pred HHHHHHHHHCCCCC
Q 010236 307 LELFTQMQEQGFYP 320 (514)
Q Consensus 307 ~~~~~~m~~~g~~p 320 (514)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444544443
No 352
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.33 E-value=2.1e+02 Score=19.81 Aligned_cols=51 Identities=14% Similarity=-0.004 Sum_probs=32.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-----HcCCCcchHHHHHHHHHh
Q 010236 438 GVAGKYKEALSVYHLMKDIGISPDLVTYSTLMKAF-----IRAKKFHKVPEIYKQMES 490 (514)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m~~ 490 (514)
...|++-+|-++++..=.....|....|..||... .+.|+. |..++.+...
T Consensus 12 fn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 12 WRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34588888888888874433334556677766543 246766 7777777765
No 353
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.15 E-value=1.8e+02 Score=26.05 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 010236 80 YNKSIQYCCKLGDIDEAMALLAQMQALGFHPSSISYASLIEALASVG-RTLEADAIFQEMVCFGF 143 (514)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~ 143 (514)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.. ..+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 456889999999999999999887521110 1122222222222211 23445566666665543
No 354
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.44 E-value=3.4e+02 Score=21.86 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 010236 83 SIQYCCKLGDIDEAMALLAQ 102 (514)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~ 102 (514)
.+...++.|+.+-+..+++.
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445567777666655554
No 355
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.43 E-value=2e+02 Score=21.77 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 010236 84 IQYCCKLGDIDEAMALLA 101 (514)
Q Consensus 84 i~~~~~~g~~~~A~~~~~ 101 (514)
+...++.|+.+....+++
T Consensus 12 l~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 344456677666666554
No 356
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.21 E-value=5.1e+02 Score=23.80 Aligned_cols=93 Identities=5% Similarity=-0.108 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHhcCC---hHHHHHHHHHHHHcC----CCCChHhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCcChHhH
Q 010236 113 ISYASLIEALASVGR---TLEADAIFQEMVCFG----FNPKLRFYNILLRGFLKKGLLGLGSRLLMVMEDMGICRNQETY 185 (514)
Q Consensus 113 ~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 185 (514)
..-..++...|..|+ .+.|.+.|+.....+ ++||.... +...-.+ ..++-..+++..... .+..--
T Consensus 198 ~lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek 270 (419)
T 3rjo_A 198 MLRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAVGAQ--STEGWDFLYSKYQFS---LSSTEK 270 (419)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHHHTT--SHHHHHHHHHHHHHC---CCHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEeeeeC--CHHHHHHHHHHHhcC---CCHHHH
Confidence 334455666666655 456667777665432 44443321 1111112 233334445555443 344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010236 186 EILLDYHVNAGRLDDTWLIINEMRSKG 212 (514)
Q Consensus 186 ~~li~~~~~~g~~~~A~~~~~~m~~~g 212 (514)
..++.+++...+.....++++......
T Consensus 271 ~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 271 SQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 667777777777777777777666544
Done!