Query 010237
Match_columns 514
No_of_seqs 316 out of 1263
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 22:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 1E-52 2.2E-57 418.6 24.7 219 77-335 17-242 (255)
2 PRK01001 putative inner membra 100.0 6.9E-53 1.5E-57 461.8 25.4 267 40-338 505-779 (795)
3 PRK00145 putative inner membra 100.0 1.9E-52 4.1E-57 409.3 23.9 209 94-336 2-212 (223)
4 PRK01318 membrane protein inse 100.0 2.3E-51 5E-56 443.3 24.6 207 90-339 298-510 (521)
5 PRK01622 OxaA-like protein pre 100.0 1.3E-50 2.9E-55 403.6 24.4 220 78-337 20-251 (256)
6 PRK02463 OxaA-like protein pre 100.0 2.5E-50 5.4E-55 410.6 25.3 219 78-337 21-251 (307)
7 PRK00247 putative inner membra 100.0 2.9E-49 6.2E-54 416.3 28.5 258 94-352 2-288 (429)
8 PRK01315 putative inner membra 100.0 1.2E-49 2.6E-54 408.4 21.2 241 90-337 4-258 (329)
9 TIGR03592 yidC_oxa1_cterm memb 100.0 2.8E-49 6.1E-54 374.9 20.8 181 120-335 1-181 (181)
10 PRK03449 putative inner membra 100.0 6.2E-49 1.3E-53 399.7 23.9 233 93-336 1-269 (304)
11 PRK02201 putative inner membra 100.0 3.1E-48 6.7E-53 401.3 23.8 223 90-336 101-341 (357)
12 COG0706 YidC Preprotein transl 100.0 4.3E-48 9.3E-53 395.5 22.3 211 90-336 84-296 (314)
13 PF02096 60KD_IMP: 60Kd inner 100.0 8.8E-48 1.9E-52 366.8 21.0 194 119-337 1-197 (198)
14 PRK02654 putative inner membra 100.0 1.7E-38 3.6E-43 323.3 23.2 241 92-347 4-348 (375)
15 KOG1239 Inner membrane protein 99.9 8.2E-22 1.8E-26 206.3 14.0 183 118-335 99-290 (372)
16 KOG1239 Inner membrane protein 99.1 1.5E-10 3.2E-15 122.1 6.4 239 90-334 4-245 (372)
17 COG1422 Predicted membrane pro 94.7 0.24 5.3E-06 48.8 9.9 89 119-211 44-143 (201)
18 PRK00247 putative inner membra 93.9 1.3 2.8E-05 48.5 14.4 60 288-352 225-292 (429)
19 PRK01001 putative inner membra 76.9 65 0.0014 38.1 15.0 78 127-211 577-662 (795)
20 PRK02201 putative inner membra 62.5 2.3E+02 0.005 30.6 14.9 104 100-211 104-225 (357)
21 PF05280 FlhC: Flagellar trans 57.2 18 0.00039 35.1 4.9 38 172-209 37-85 (175)
22 PF09973 DUF2208: Predicted me 56.2 54 0.0012 33.4 8.2 79 117-210 21-111 (233)
23 COG1422 Predicted membrane pro 55.4 2.1E+02 0.0045 28.7 11.8 62 148-212 79-148 (201)
24 PF01956 DUF106: Integral memb 55.2 45 0.00097 31.4 7.1 45 120-164 14-63 (168)
25 PRK01315 putative inner membra 38.7 5.2E+02 0.011 27.7 14.7 110 95-212 2-129 (329)
26 TIGR03593 yidC_nterm membrane 32.1 45 0.00098 35.1 3.5 22 90-111 343-364 (366)
27 TIGR00828 EIID-AGA PTS system, 29.7 1.4E+02 0.003 31.1 6.4 42 159-208 39-80 (271)
28 KOG4819 Uncharacterized conser 28.7 1E+02 0.0022 27.7 4.4 31 382-412 33-63 (106)
29 COG3105 Uncharacterized protei 28.6 1.7E+02 0.0037 27.5 6.1 12 152-163 38-49 (138)
30 PRK12585 putative monovalent c 28.5 6.1E+02 0.013 25.4 12.1 20 310-329 69-88 (197)
31 TIGR03142 cytochro_ccmI cytoch 28.2 4.1E+02 0.0088 23.7 8.5 38 128-165 10-53 (117)
32 PRK09855 PTS system N-acetylga 27.8 1.5E+02 0.0032 30.7 6.3 32 159-190 41-72 (263)
33 PF10852 DUF2651: Protein of u 25.4 4.4E+02 0.0095 22.9 7.6 18 261-278 7-24 (82)
34 PF06570 DUF1129: Protein of u 25.3 6.4E+02 0.014 24.5 16.9 67 143-210 24-99 (206)
35 PF09958 DUF2192: Uncharacteri 24.4 1.3E+02 0.0028 30.8 4.9 37 157-193 17-53 (231)
36 COG1333 ResB ResB protein requ 23.2 2.9E+02 0.0064 31.0 7.8 106 119-226 55-181 (478)
37 PRK11103 PTS system mannose-sp 23.1 1.9E+02 0.0042 30.2 6.1 42 159-208 49-90 (282)
38 COG1377 FlhB Flagellar biosynt 21.9 3.2E+02 0.007 29.7 7.6 41 124-169 196-239 (363)
39 KOG3817 Uncharacterized conser 21.1 3.3E+02 0.0073 29.8 7.4 68 121-188 277-350 (452)
40 KOG4075 Cytochrome c oxidase, 20.9 2.1E+02 0.0046 27.9 5.4 61 148-208 49-123 (167)
41 PF09803 DUF2346: Uncharacteri 20.5 4.9E+02 0.011 22.3 7.0 9 310-318 16-24 (80)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1e-52 Score=418.57 Aligned_cols=219 Identities=27% Similarity=0.603 Sum_probs=192.3
Q ss_pred ccccccccc---ccccccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhh
Q 010237 77 AVSSSDAVT---TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSL 153 (514)
Q Consensus 77 a~~~~d~~~---~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~L 153 (514)
..++|+... .+..+|.|+++|+.++++++.++|..+ +.+||+|||++|+++|++++|++++|+|+++||+++
T Consensus 17 ~~~gc~~~~~~~~~~~~g~~~~~~~~p~~~~l~~i~~~~-----g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~i 91 (255)
T PRK02944 17 ILAGCSEVNQPITPKSTGFWNEYFVYPLSQLITYFANLF-----GSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQAL 91 (255)
T ss_pred HHhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356776542 445677788889999999999998853 468999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhhcC----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCc
Q 010237 154 APQVKAIQERYAGD----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229 (514)
Q Consensus 154 qPel~~IqeKyk~D----~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~P 229 (514)
|||+++||+||++| ++++|+|+++|||||||||++||+|+|+|+|||||+|++++++.+ +.+++|+|+ ||+.+
T Consensus 92 qPe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~ 168 (255)
T PRK02944 92 QPEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQA 168 (255)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcc
Confidence 99999999999864 568899999999999999999999999999999999999998864 677899999 99887
Q ss_pred hhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhh
Q 010237 230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFAL 309 (514)
Q Consensus 230 D~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~ 309 (514)
| ||+|||+++++++|++.++....... +..+++.|+++||+++++|++
T Consensus 169 D------------------------------p~~iLPil~~~~~~~~~~~~~~~~~~--~~~~~~~m~~i~p~~~~~~~~ 216 (255)
T PRK02944 169 D------------------------------PYYILPIVAGITTFIQQKLMMAGTAG--QNPQMAMMLWLMPIMILIFAI 216 (255)
T ss_pred h------------------------------HHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHHHHHHH
Confidence 6 78999999999999998875332211 223577899999999999999
Q ss_pred hhhhHhHHHHHhhhHHHHHHHHHHHH
Q 010237 310 SVPSGLSLYWFTNNLLSTAQQVWLQK 335 (514)
Q Consensus 310 ~~PaGL~LYWitSNlfsiiQq~iL~k 335 (514)
++|+||++||++||+|+++|+++++.
T Consensus 217 ~~Pagl~lYw~~s~~~~i~Q~~~l~~ 242 (255)
T PRK02944 217 NFPAALSLYWVVGNIFMIAQTYLIKG 242 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999975
No 2
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=6.9e-53 Score=461.82 Aligned_cols=267 Identities=28% Similarity=0.481 Sum_probs=207.9
Q ss_pred cceeeEEeeccCCCCCchhhhhhhhhcccccccccccccccccc---cc-ccccccchhhhHHHHHHHHHHHHHhhhhhc
Q 010237 40 GSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDA---VT-TTKQNSDWLSGITNVMETVLKVLKDGMSTL 115 (514)
Q Consensus 40 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ad~a~~~~d~---~~-~~~~~~~w~~~i~~~me~vL~~L~~~L~~i 115 (514)
+.....+|.++-||-+...++.+ |........ .+ ..-...|||++|+.++..++.++..++..+
T Consensus 505 ~~~~~~~~~lY~GPkd~~~Lk~~------------~~~~~~~~~~~~~~l~~i~~~GWf~fI~~Pia~~L~~ll~~fh~l 572 (795)
T PRK01001 505 KEAGTYRFLVYAGPLADPTLKTL------------DRAYTNSKGENPEYLDSITFRGFFSFITEPFAALLFIIMKFFKFL 572 (795)
T ss_pred CCcceEEEEEEeCCCcHHHHHHh------------hhhcccccccccchhhhhhhccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667888888888775555221 111100000 00 111245899999999877665554443322
Q ss_pred ccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHH
Q 010237 116 HVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLA 195 (514)
Q Consensus 116 h~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LI 195 (514)
.+|||+|||++||+||++++||+++|+|||+||+.|||+|++||+||++|++++|+|||+|||+|||||++||||+||
T Consensus 573 --~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVNPl~GCLPmLI 650 (795)
T PRK01001 573 --TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLI 650 (795)
T ss_pred --cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccccccce--eccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 010237 196 TIPVWIGLYRALSNVADEGLLTEGFF--WIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQ 273 (514)
Q Consensus 196 QIPIFIgLY~vLr~~a~~gl~t~gFL--Wi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~ 273 (514)
||||||+||++|+++.. +...+|+ |++||+.||++. .|.+|. +.+ .| ++.||||+++++|
T Consensus 651 QmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDplf--------~~~~~i----~Fi--Gd--~i~ILPILmgvtm 712 (795)
T PRK01001 651 QLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVLF--------SWETPI----WFI--GN--EFHLLPILLGVVM 712 (795)
T ss_pred HHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCccc--------cccccc----ccc--cc--chhHHHHHHHHHH
Confidence 99999999999998753 5567887 999999999532 222221 001 12 6789999999999
Q ss_pred HHHHHHhcccC--CCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhcC
Q 010237 274 YISVKIIQSSQ--NNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG 338 (514)
Q Consensus 274 fls~~i~~~~q--~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~~ 338 (514)
|+++++++... +.++++++++.|+++||+||++|+.++|+||+|||++||+|+++||+++++.+.
T Consensus 713 flqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~~~ 779 (795)
T PRK01001 713 FAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKILD 779 (795)
T ss_pred HHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 99998764321 122234456678899999999999999999999999999999999999998543
No 3
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.9e-52 Score=409.31 Aligned_cols=209 Identities=30% Similarity=0.605 Sum_probs=188.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcc--cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHH
Q 010237 94 LSGITNVMETVLKVLKDGMSTLH--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERI 171 (514)
Q Consensus 94 ~~~i~~~me~vL~~L~~~L~~ih--~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~ 171 (514)
+++|.+++..+++++|+.+..++ .++|||+|||++|+++|++++|++++|+|+++||+++||++++||+||++|++++
T Consensus 2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~ 81 (223)
T PRK00145 2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL 81 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence 45677777788888888776554 3689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCccccccccCCC
Q 010237 172 QLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGH 251 (514)
Q Consensus 172 qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~ 251 (514)
|+|+++|||||||||++||+|+|+|+|||+++|+++++++. +.+++|+|++||+.+|
T Consensus 82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D--------------------- 138 (223)
T PRK00145 82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD--------------------- 138 (223)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence 99999999999999999999999999999999999999863 7788999999999887
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHH
Q 010237 252 PPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQV 331 (514)
Q Consensus 252 ~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~ 331 (514)
||+|||+++++++|++++.+.... ..+.++++.|+++||++++++++++|+||+|||++||+|+++|++
T Consensus 139 ---------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~ 207 (223)
T PRK00145 139 ---------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207 (223)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999988764431 223346778899999999999999999999999999999999999
Q ss_pred HHHHh
Q 010237 332 WLQKF 336 (514)
Q Consensus 332 iL~k~ 336 (514)
++++.
T Consensus 208 ~l~~~ 212 (223)
T PRK00145 208 FIKKL 212 (223)
T ss_pred HHHhh
Confidence 99874
No 4
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=2.3e-51 Score=443.26 Aligned_cols=207 Identities=37% Similarity=0.698 Sum_probs=186.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 010237 90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169 (514)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~q 169 (514)
+-||+.+|+.++.++++++|.++ +|||+|||++||+||++++||+++|+|+++||+++||+|++||+||++|++
T Consensus 298 ~~G~~~~~~~pl~~~L~~i~~~~------g~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~ 371 (521)
T PRK01318 298 DYGWLWFITKPLFWLLDFLHSFV------GNWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ 371 (521)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence 56799999999999999998743 399999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccce-eccCCCCchhHhhhhcCCCcccccccc
Q 010237 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPFV 248 (514)
Q Consensus 170 k~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFL-Wi~DLs~PD~iaa~~~G~~iswl~p~~ 248 (514)
++|+|||+|||+|||||++||||+|+||||||++|++++++.+ +.+.+|+ ||+||+.||
T Consensus 372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------ 431 (521)
T PRK01318 372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------ 431 (521)
T ss_pred HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence 9999999999999999999999999999999999999998764 6677887 999999988
Q ss_pred CCCCCCCCchhHHHHHH-----HHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhh
Q 010237 249 DGHPPLGWSDTFAYLVL-----PVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNN 323 (514)
Q Consensus 249 ~g~~~Lg~~D~lpy~IL-----PIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSN 323 (514)
||+|| ||++++++|++++++... .+| +++.||.+||+++++|+.++|+||+|||++||
T Consensus 432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn 494 (521)
T PRK01318 432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDP---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNN 494 (521)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566 999999999999886432 344 34566777999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 010237 324 LLSTAQQVWLQKFGGA 339 (514)
Q Consensus 324 lfsiiQq~iL~k~~~~ 339 (514)
+|+++||+++++.+..
T Consensus 495 ~~si~Q~~~l~~~~~~ 510 (521)
T PRK01318 495 LLTIIQQYLINRRLEK 510 (521)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999999986443
No 5
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.3e-50 Score=403.56 Aligned_cols=220 Identities=27% Similarity=0.499 Sum_probs=190.2
Q ss_pred cccccccc--ccccccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHH----HHHHH
Q 010237 78 VSSSDAVT--TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVES----SMAMR 151 (514)
Q Consensus 78 ~~~~d~~~--~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS----~aKMq 151 (514)
.++|++.. .+..+|.|++++++++..++.++|+.+ +.+||+||+++|+++|++++|++++|+|+ ++||+
T Consensus 20 ~~gc~~~~~~~~~~~~~~~~~~~~p~~~ll~~l~~~~-----~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~ 94 (256)
T PRK01622 20 LSGCSNAAPIDAHSDGFFDHYFVYPFSFLIQFVAHHI-----GGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMA 94 (256)
T ss_pred HhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56776653 344577788889999999999998854 36899999999999999999999999999 89999
Q ss_pred hhcHHHHHHHHHhhc--CHH---HHHHHHHHHHHHcCCCCCc-CchHHHHHHHHHHHHHHHHHhhhhhccccccceeccC
Q 010237 152 SLAPQVKAIQERYAG--DQE---RIQLETARLYKLAGINPLA-GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPS 225 (514)
Q Consensus 152 ~LqPel~~IqeKyk~--D~q---k~qqEm~kLYKk~gVNPl~-GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~D 225 (514)
++||++++||+||++ |++ ++|+|+++|||||||||++ ||+|+|+|+||||++|+++|++. ++.+++|+|+ |
T Consensus 95 ~iqP~l~~iq~kyk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-d 171 (256)
T PRK01622 95 VMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-N 171 (256)
T ss_pred HhCHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-C
Confidence 999999999999986 433 5789999999999999999 99999999999999999999975 4788999999 8
Q ss_pred CCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH
Q 010237 226 LAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIG 305 (514)
Q Consensus 226 Ls~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~ 305 (514)
|+.+| +|||+++++++++++++++.......+.++++.|+++||++++
T Consensus 172 Ls~~D--------------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~ 219 (256)
T PRK01622 172 LGHAD--------------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMIL 219 (256)
T ss_pred Ccchh--------------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 87653 6899999999999988765322222233467889999999999
Q ss_pred HHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 010237 306 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (514)
Q Consensus 306 ~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~ 337 (514)
++++++|+||++||++||+|+++|++++++.+
T Consensus 220 ~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~ 251 (256)
T PRK01622 220 FMSFAAPSALVLYWITGGLFLMGQTIVLRKVM 251 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999853
No 6
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=2.5e-50 Score=410.59 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=187.4
Q ss_pred cccccccc-ccccccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHH----HHHHHh
Q 010237 78 VSSSDAVT-TTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVES----SMAMRS 152 (514)
Q Consensus 78 ~~~~d~~~-~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS----~aKMq~ 152 (514)
.++|.... .|...|-|++.++.|+..++++++.. ++++||+|||++||+||++++||+++|+++ ++||+.
T Consensus 21 lsgc~~~~~~~~~~g~~~~~l~~p~~~~l~~i~~~-----~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~ 95 (307)
T PRK02463 21 LTGCVGRDKHGNPTGFIWNFLGAPMSYFIDYFANN-----LGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAY 95 (307)
T ss_pred HhccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56776553 34556666788999999999998874 346899999999999999999999988875 689999
Q ss_pred hcHHHHHHHHHhhcC-----HHHHHHHHHHHHHHcCCCCCc--CchHHHHHHHHHHHHHHHHHhhhhhccccccceeccC
Q 010237 153 LAPQVKAIQERYAGD-----QERIQLETARLYKLAGINPLA--GCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPS 225 (514)
Q Consensus 153 LqPel~~IqeKyk~D-----~qk~qqEm~kLYKk~gVNPl~--GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~D 225 (514)
+||++++||+||+++ ++++|+|+|+|||||||||++ ||||+|||+|||||+|+++++. +++.+++|+|+ |
T Consensus 96 lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-d 172 (307)
T PRK02463 96 LKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-D 172 (307)
T ss_pred hChhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-e
Confidence 999999999999863 335689999999999999998 8999999999999999999975 45888999999 8
Q ss_pred CCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHH
Q 010237 226 LAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIG 305 (514)
Q Consensus 226 Ls~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~ 305 (514)
|+.| +++||++++++++++++++....+ +.+.++++.|+++||+|++
T Consensus 173 L~~p--------------------------------~~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~ 219 (307)
T PRK02463 173 LGSP--------------------------------SLVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMV 219 (307)
T ss_pred cCch--------------------------------hHHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHH
Confidence 8654 478999999999998887543332 2244567889999999999
Q ss_pred HHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 010237 306 YFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (514)
Q Consensus 306 ~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~ 337 (514)
+|++++|+||+|||++||+|+++||+++++++
T Consensus 220 ~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~ 251 (307)
T PRK02463 220 VFSFSSPAGVGLYWLVGGFFSIIQQLITTYIL 251 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999764
No 7
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=2.9e-49 Score=416.32 Aligned_cols=258 Identities=23% Similarity=0.323 Sum_probs=193.6
Q ss_pred hhhHHHHHHHHHHHHHhhhhh-ccc--CcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcC---
Q 010237 94 LSGITNVMETVLKVLKDGMST-LHV--PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD--- 167 (514)
Q Consensus 94 ~~~i~~~me~vL~~L~~~L~~-ih~--~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D--- 167 (514)
+++|++|+.+|+.++|+++.. ++. +++||++|+++||+||++++||+++|+|+++||+.|||+|++||+||+++
T Consensus 2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~ 81 (429)
T PRK00247 2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE 81 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence 678999999999999998873 443 56799999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--hccccccceeccCCCCchhHh---hhhcCCC
Q 010237 168 --QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--EGLLTEGFFWIPSLAGPTTIA---ARQNGSG 240 (514)
Q Consensus 168 --~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~--~gl~t~gFLWi~DLs~PD~ia---a~~~G~~ 240 (514)
++++++|+++|||+|||||++||||+|||+|||||||++|++|+. +|+.+..+.|+--|+.++... +..+|.+
T Consensus 82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp 161 (429)
T PRK00247 82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP 161 (429)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence 357899999999999999999999999999999999999999974 455544444555555544211 2334544
Q ss_pred ccccccccC-CCCC--CCCchhHHHHHHHHHHHHH--HHHHHHHhcccC--C---CCc----chHHHHHHHHHHHHHHHH
Q 010237 241 ISWLFPFVD-GHPP--LGWSDTFAYLVLPVLLVVS--QYISVKIIQSSQ--N---NDP----NMKSSQALTNFLPLMIGY 306 (514)
Q Consensus 241 iswl~p~~~-g~~~--Lg~~D~lpy~ILPIL~~~s--~fls~~i~~~~q--~---~dp----~~k~~k~mm~~mPlmi~~ 306 (514)
++-.+-... +..- .+.+| +.+++||++++++ +++++.++...+ . .++ +++++..|++++|+|+++
T Consensus 162 L~~~~sm~~e~~~~~~~~~~~-v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~ 240 (429)
T PRK00247 162 LPAYVSMPAEQLAYLGTTQAT-VLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS 240 (429)
T ss_pred cccccccchhhhhhccCCccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence 432111000 0000 12233 3468888555554 456666543221 1 122 223355566889999998
Q ss_pred Hhhh--hhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 010237 307 FALS--VPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD 352 (514)
Q Consensus 307 f~~~--~PaGL~LYWitSNlfsiiQq~iL~k~~~~k~Pl~~~~~i~k~ 352 (514)
++++ ||+||+|||++||+|+++||++++..+..++|+.+.++...+
T Consensus 241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~~~~ 288 (429)
T PRK00247 241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKEHHA 288 (429)
T ss_pred HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 8776 799999999999999999999999888899999998855443
No 8
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.2e-49 Score=408.41 Aligned_cols=241 Identities=28% Similarity=0.467 Sum_probs=184.0
Q ss_pred ccchhhhHHHHHHHHH----HHHHhhhhhc-c--cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHH
Q 010237 90 NSDWLSGITNVMETVL----KVLKDGMSTL-H--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQE 162 (514)
Q Consensus 90 ~~~w~~~i~~~me~vL----~~L~~~L~~i-h--~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~Iqe 162 (514)
-.+||+.|++|+++++ .++|+++..+ + .+++||+|||++|++||++++||+++|+|+++||+++||+|++||+
T Consensus 4 ~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~ 83 (329)
T PRK01315 4 LADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQE 83 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 3578999998877766 6668877655 2 2469999999999999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCcc
Q 010237 163 RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS 242 (514)
Q Consensus 163 Kyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~is 242 (514)
||++|++++++|+++|||||||||++||||+|+|+||||++|++|++++..+ ..-.+|.+++...- ..+..+|.+++
T Consensus 84 kyk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~s~-~~~~~fg~~L~ 160 (329)
T PRK01315 84 KYKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLESF-RHAHIFGAPLA 160 (329)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHHhh-hcccccccccc
Confidence 9999999999999999999999999999999999999999999999865321 11123433332110 00111122221
Q ss_pred -ccccccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHH-hccc----CCCCcchHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010237 243 -WLFPFVDGHPPLGWSD-TFAYLVLPVLLVVSQYISVKI-IQSS----QNNDPNMKSSQALTNFLPLMIGYFALSVPSGL 315 (514)
Q Consensus 243 -wl~p~~~g~~~Lg~~D-~lpy~ILPIL~~~s~fls~~i-~~~~----q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL 315 (514)
++++.. ..+..+ .+.++|||+++++++|++++. +.+. +..+|+++++++|+++||+|++++++++|+||
T Consensus 161 ~~f~~~~----~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL 236 (329)
T PRK01315 161 ATFLQAL----NAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGV 236 (329)
T ss_pred ccccccc----cccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000 012222 245789999999999998653 2221 22355566788899999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhc
Q 010237 316 SLYWFTNNLLSTAQQVWLQKFG 337 (514)
Q Consensus 316 ~LYWitSNlfsiiQq~iL~k~~ 337 (514)
+|||++||+|+++||+++.+.+
T Consensus 237 ~LYW~~snl~si~Qq~~v~r~~ 258 (329)
T PRK01315 237 LFYWLTSNVWTMGQQFYVIRNN 258 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988743
No 9
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=2.8e-49 Score=374.92 Aligned_cols=181 Identities=39% Similarity=0.759 Sum_probs=168.1
Q ss_pred chHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHH
Q 010237 120 AYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPV 199 (514)
Q Consensus 120 ~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPI 199 (514)
|||+||+++|+++|++++|++++|+|+++||+++|||+++||+||++|++++++|+++||||||+||++||+|+|+|+||
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi 80 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI 80 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010237 200 WIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKI 279 (514)
Q Consensus 200 FIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i 279 (514)
|+++|+++|++. ++.++||+|++||+.+| ||++||+++++++++++++
T Consensus 81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~ 128 (181)
T TIGR03592 81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL 128 (181)
T ss_pred HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999975 47889999999999887 7899999999999999988
Q ss_pred hcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHH
Q 010237 280 IQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335 (514)
Q Consensus 280 ~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k 335 (514)
..+.. . +.++++.|++++|+++++++.++|+|+++||++||+|+++|++++++
T Consensus 129 ~~~~~-~--~~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 129 SPSGP-P--DPAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred cCCCC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 64422 2 22457788899999999999999999999999999999999999874
No 10
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=6.2e-49 Score=399.66 Aligned_cols=233 Identities=24% Similarity=0.426 Sum_probs=181.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhc-c--cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 010237 93 WLSGITNVMETVLKVLKDGMSTL-H--VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169 (514)
Q Consensus 93 w~~~i~~~me~vL~~L~~~L~~i-h--~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~q 169 (514)
+++.+++|+.+++.++|+++..+ | .+.+||+|||++|++||++++|++++|+|+++||+++||++++||+||++|++
T Consensus 1 ml~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~ 80 (304)
T PRK03449 1 MLDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQ 80 (304)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHH
Confidence 36788899999999999877542 3 36799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------ccceeccCC
Q 010237 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADE--GLLT---------------------EGFFWIPSL 226 (514)
Q Consensus 170 k~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~--gl~t---------------------~gFLWi~DL 226 (514)
++++|+++|||||||||++||+|+|+|+||||++|++||++... |+.. .+|+|.
T Consensus 81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~--- 157 (304)
T PRK03449 81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA--- 157 (304)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh---
Confidence 99999999999999999999999999999999999999998542 2111 122222
Q ss_pred CCchhHhhhhcCCCcc-ccc-cc--cCCCCCCCCchh-HHHHHHHHHHHHHHHHHHHHhcccC----CCCcchH-HHHHH
Q 010237 227 AGPTTIAARQNGSGIS-WLF-PF--VDGHPPLGWSDT-FAYLVLPVLLVVSQYISVKIIQSSQ----NNDPNMK-SSQAL 296 (514)
Q Consensus 227 s~PD~iaa~~~G~~is-wl~-p~--~~g~~~Lg~~D~-lpy~ILPIL~~~s~fls~~i~~~~q----~~dp~~k-~~k~m 296 (514)
..+|.+++ |+. +. .+....++..|. +..++|||++++++|+++++++..+ ..++++. +++.|
T Consensus 158 --------~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M 229 (304)
T PRK03449 158 --------RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLA 229 (304)
T ss_pred --------hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHH
Confidence 12233332 211 00 000001222232 2456789999999999988754322 1234433 45788
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHh
Q 010237 297 TNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336 (514)
Q Consensus 297 m~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~ 336 (514)
+++||+|++++++++|+||.|||++||+|+++||+++++.
T Consensus 230 ~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~ 269 (304)
T PRK03449 230 LWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGK 269 (304)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999863
No 11
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=3.1e-48 Score=401.33 Aligned_cols=223 Identities=18% Similarity=0.362 Sum_probs=183.7
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhh-hcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcC-
Q 010237 90 NSDWLSGITNVMETVLKVLKDGMS-TLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD- 167 (514)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~-~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D- 167 (514)
.|.|++.|++|+.+++.+++.... ....+.+||+|||++|+++|++++||+++|+++++||+++|||+++||+||++|
T Consensus 101 ~G~f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~ 180 (357)
T PRK02201 101 YGPFYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYK 180 (357)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 455889999999999999862111 112367899999999999999999999999999999999999999999999876
Q ss_pred -----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCcc
Q 010237 168 -----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGIS 242 (514)
Q Consensus 168 -----~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~is 242 (514)
++++|+|+|+|||||||||++||||+|+|+|||+|||++++.+.+ +....|+|+ ||+.+|..
T Consensus 181 ~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~---------- 247 (357)
T PRK02201 181 KDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ---------- 247 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh----------
Confidence 778999999999999999999999999999999999999998864 667889999 99887621
Q ss_pred ccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhc----ccC-----C--CCcchHHHHHHHHHHHHHHHHHhhhh
Q 010237 243 WLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ----SSQ-----N--NDPNMKSSQALTNFLPLMIGYFALSV 311 (514)
Q Consensus 243 wl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~----~~q-----~--~dp~~k~~k~mm~~mPlmi~~f~~~~ 311 (514)
.+ +.+.++|+++++++++++++++.+++ +.+ + ..++++.++.|+++||++++++++++
T Consensus 248 ~~-----------~~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~ 316 (357)
T PRK02201 248 EI-----------FAGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIF 316 (357)
T ss_pred hh-----------ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11233677777888877777765532 111 1 11233457789999999999999999
Q ss_pred hhHhHHHHHhhhHHHHHHHHHHHHh
Q 010237 312 PSGLSLYWFTNNLLSTAQQVWLQKF 336 (514)
Q Consensus 312 PaGL~LYWitSNlfsiiQq~iL~k~ 336 (514)
|+||.|||++||+|+++||++++++
T Consensus 317 PaGL~LYW~~snl~tI~Qq~~i~~~ 341 (357)
T PRK02201 317 AAGVQIYWIIGGIWTILQTLGIHYF 341 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999873
No 12
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.3e-48 Score=395.45 Aligned_cols=211 Identities=35% Similarity=0.653 Sum_probs=181.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhh-cCH
Q 010237 90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYA-GDQ 168 (514)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk-~D~ 168 (514)
+-+||..+..++..++.+++.+ .+.|||++||++|++||++++|++.+|+++++||+++||++++||+||+ +|+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~~~~-----~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~ 158 (314)
T COG0706 84 DYGWFWNILAPLFPLLLFIDSF-----SGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK 158 (314)
T ss_pred chhhHHHHHHHHHHHHHHHHHh-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence 3456666655566666666442 2348999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccce-eccCCCCchhHhhhhcCCCccccccc
Q 010237 169 ERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFF-WIPSLAGPTTIAARQNGSGISWLFPF 247 (514)
Q Consensus 169 qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFL-Wi~DLs~PD~iaa~~~G~~iswl~p~ 247 (514)
+++|+|+|+|||||||||++||+|+|+|+||||++|+++++... +...+|+ |+.||+.+|+
T Consensus 159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp---------------- 220 (314)
T COG0706 159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDP---------------- 220 (314)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCC----------------
Confidence 99999999999999999999999999999999999999998864 5556676 9999988762
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHH
Q 010237 248 VDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLST 327 (514)
Q Consensus 248 ~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsi 327 (514)
+ ..+++||++++++|++++++..... +++.+++++|+++||+++.++++++|+||+|||++||+|++
T Consensus 221 ----------~--~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi 287 (314)
T COG0706 221 ----------D--YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI 287 (314)
T ss_pred ----------c--hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence 1 1236699999999999998755332 33445788999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 010237 328 AQQVWLQKF 336 (514)
Q Consensus 328 iQq~iL~k~ 336 (514)
+||+++++.
T Consensus 288 ~Qq~ii~~~ 296 (314)
T COG0706 288 LQQYILNKP 296 (314)
T ss_pred HHHHHHhhh
Confidence 999999975
No 13
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=8.8e-48 Score=366.76 Aligned_cols=194 Identities=39% Similarity=0.717 Sum_probs=177.0
Q ss_pred cchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHH
Q 010237 119 YAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIP 198 (514)
Q Consensus 119 ~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIP 198 (514)
.+||+||+++|+++|++++|++++|+|+++||++++|++++||+||++|++++++|++++||||||||++||+|+|+|+|
T Consensus 1 ~sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~P 80 (198)
T PF02096_consen 1 GSWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIP 80 (198)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh-hccccccceeccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 010237 199 VWIGLYRALSNVAD-EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISV 277 (514)
Q Consensus 199 IFIgLY~vLr~~a~-~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~~~s~fls~ 277 (514)
|||++|+++|+++. +++.++||+|++||+.||+. ..+||+|||+++++++++++
T Consensus 81 if~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~ 135 (198)
T PF02096_consen 81 IFIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQ 135 (198)
T ss_pred HHHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHH
Confidence 99999999999876 67888999999999999831 12489999999999999999
Q ss_pred HHhcc--cCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhc
Q 010237 278 KIIQS--SQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFG 337 (514)
Q Consensus 278 ~i~~~--~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~ 337 (514)
++..+ ......+.++++.|++++|+++++++.++|+|+++||++||+|+++|++++++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~ 197 (198)
T PF02096_consen 136 ELSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF 197 (198)
T ss_pred HHHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 98653 2223344567888999999999999999999999999999999999999999864
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.7e-38 Score=323.27 Aligned_cols=241 Identities=27% Similarity=0.498 Sum_probs=166.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHH----HHHHHhhcC
Q 010237 92 DWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVK----AIQERYAGD 167 (514)
Q Consensus 92 ~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~----~IqeKyk~D 167 (514)
||.....+++..++++++.++ .+||+|||++|++||++++||+++|+|+++||+.+||+|+ +||+||++|
T Consensus 4 G~g~i~~~il~~iL~f~y~~v------gswGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdD 77 (375)
T PRK02654 4 GIGFISNNVMLPILDFFYGIV------PSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKND 77 (375)
T ss_pred chHHHHHhHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCC
Confidence 443333456777788777632 4899999999999999999999999999999999999985 799999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh--------------h---ccccccc------eecc
Q 010237 168 QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD--------------E---GLLTEGF------FWIP 224 (514)
Q Consensus 168 ~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~--------------~---gl~t~gF------LWi~ 224 (514)
++++|+|||+|||||| ||++||||+|||+|||++||++||...- + ......| .++.
T Consensus 78 pqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~spf~~~~y~~~l~i~p~~qi~~v~~~~~~~~~~~i~~~ 156 (375)
T PRK02654 78 PQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVQPQPFKSKPQNIFIT 156 (375)
T ss_pred HHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHhCccccccceeecccCCHHHHhhhcCCCcCCCCceEEEe
Confidence 9999999999999999 9999999999999999999999998421 0 0000011 1111
Q ss_pred CCCC-------c--hhHh---------hhhcCCCc--------------cccc---------------------------
Q 010237 225 SLAG-------P--TTIA---------ARQNGSGI--------------SWLF--------------------------- 245 (514)
Q Consensus 225 DLs~-------P--D~ia---------a~~~G~~i--------------swl~--------------------------- 245 (514)
|-.. | +-++ ....|.++ .|-+
T Consensus 157 ~~~h~~~~a~~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~~~p~~~v~kg~~~~~~~~~g~~~al~pgd~ti~~ 236 (375)
T PRK02654 157 DGVHFPVIASLPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSKLSPTWKVTKGEERVKVSEDGTIEALAPGDATIQG 236 (375)
T ss_pred cCccceEEEEcCCCCcccccceeEEEEecCCCCcHHHHHhcCCccccCceeEEecCceeEEECCCCcEEEecCCceEEEE
Confidence 1100 0 0000 00001111 1111
Q ss_pred --c---------ccCCCCCCCCc--hh---HHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHH--
Q 010237 246 --P---------FVDGHPPLGWS--DT---FAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYF-- 307 (514)
Q Consensus 246 --p---------~~~g~~~Lg~~--D~---lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f-- 307 (514)
| |+...+..|.. |. |-..++-+..+++.|+++.++....+.+| +|+.+..+.|+||.-+
T Consensus 237 ~ipg~aa~~gflfi~alg~vg~~~~dg~i~wdi~~mi~~fg~sl~~~q~lsg~~~~~~~---qq~t~nkitpv~~sgmfl 313 (375)
T PRK02654 237 TIPGLAANSGFLFIKALGQVGFYDVDGAINWDILIMVLGFGVSLYLSQVLSGQGMPANP---QQSTANKITPVMFSGMFL 313 (375)
T ss_pred eecceecccCceehHhhcccCccCCCCceeHHHHHHHHHhhhhhhhhHhhhcCCCCCCh---hHHHHHhhhhHHHhhhHh
Confidence 0 00000112222 11 22345556667889998877654444454 4667888999998543
Q ss_pred hhhhhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccch
Q 010237 308 ALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFS 347 (514)
Q Consensus 308 ~~~~PaGL~LYWitSNlfsiiQq~iL~k~~~~k~Pl~~~~ 347 (514)
++-+|+|+.+||++.|+|..+|+++|.| .||.+..
T Consensus 314 ffplpagvllym~ianifq~~qt~~l~r-----eplpenl 348 (375)
T PRK02654 314 FFPLPAGVLLYMVIANIFQTLQTFLLSR-----EPLPENL 348 (375)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhc-----CcChHHH
Confidence 4457999999999999999999999985 7887665
No 15
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=8.2e-22 Score=206.34 Aligned_cols=183 Identities=20% Similarity=0.384 Sum_probs=157.6
Q ss_pred CcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcC------HHHHHHHHHHHHHHcCCCCCcCch
Q 010237 118 PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGD------QERIQLETARLYKLAGINPLAGCL 191 (514)
Q Consensus 118 ~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D------~qk~qqEm~kLYKk~gVNPl~GCL 191 (514)
+.+||++|+..|+.+|.+++|+.+.++|+.+|+..+.|+|.++.++.+.- ....++|++++|++||++| ....
T Consensus 99 g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~-~~l~ 177 (372)
T KOG1239|consen 99 GLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKP-KQLA 177 (372)
T ss_pred CCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHHHhhhhhcCCCc-chhh
Confidence 67999999999999999999999999999999999999999999988642 2245778999999999999 9888
Q ss_pred HHHHHHHHHHHHHHHHHhhhh--hccccccceeccCCCCchhHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHH
Q 010237 192 PTLATIPVWIGLYRALSNVAD--EGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLL 269 (514)
Q Consensus 192 P~LIQIPIFIgLY~vLr~~a~--~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~~~g~~~Lg~~D~lpy~ILPIL~ 269 (514)
-+++|.|+|++.|.+||.|+. +++.+++++|++||+.+| |++++|+++
T Consensus 178 ~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d------------------------------p~~ilp~it 227 (372)
T KOG1239|consen 178 LPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD------------------------------PLYILPGIT 227 (372)
T ss_pred hhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC------------------------------cchhhHHHH
Confidence 889999999999999999984 467778999999998876 789999999
Q ss_pred HHHHHHHHHHhccc-CCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHHHHHHHHHHH
Q 010237 270 VVSQYISVKIIQSS-QNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQK 335 (514)
Q Consensus 270 ~~s~fls~~i~~~~-q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k 335 (514)
.+++...++..... .........++.+..++|+++..++.++|++++.||+ |+++|..+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~ 290 (372)
T KOG1239|consen 228 LATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS 290 (372)
T ss_pred HHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH
Confidence 99988877764321 1122333457788899999999999999999999999 99999999764
No 16
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.5e-10 Score=122.06 Aligned_cols=239 Identities=21% Similarity=0.233 Sum_probs=207.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhcccCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 010237 90 NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169 (514)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~D~q 169 (514)
...|+..+...++..+..+.......|....++.++...|+++.+...|+...+..+..-|+.++|....+...+...+.
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 56788888889998888888888888888899999999999999999999999999999999999999999999888765
Q ss_pred --HHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhhccccccceeccCCCCchhHhhhhcCCCccccccc
Q 010237 170 --RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPF 247 (514)
Q Consensus 170 --k~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DLs~PD~iaa~~~G~~iswl~p~ 247 (514)
.+|.++..+|+-.|++++++|++..+-|+..+..|++.+. ......+.++.|++.+..+...++..++..+.|..++
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~ 162 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ 162 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence 8999999999999999999999999999999999999986 4444556788999988887767777788889999988
Q ss_pred cCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhcccCCCCcchHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhHHH
Q 010237 248 VDGHPPLGWS-DTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLS 326 (514)
Q Consensus 248 ~~g~~~Lg~~-D~lpy~ILPIL~~~s~fls~~i~~~~q~~dp~~k~~k~mm~~mPlmi~~f~~~~PaGL~LYWitSNlfs 326 (514)
...+.+.|+. +.+.+.+++..+.++.|+.++.|.-+....+. ....++|-+..+..+..+.++..||+++++..
T Consensus 163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t-----~g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~ 237 (372)
T KOG1239|consen 163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTT-----GGLLWFPDLTGPDPLYILPGITLATLTLFIEL 237 (372)
T ss_pred HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccch-----hhHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence 8888888998 98889999999999999999988744433321 25567788888888889999999999999999
Q ss_pred HHHHHHHH
Q 010237 327 TAQQVWLQ 334 (514)
Q Consensus 327 iiQq~iL~ 334 (514)
-.|+....
T Consensus 238 ~~~~~~~~ 245 (372)
T KOG1239|consen 238 GAETGLSS 245 (372)
T ss_pred HHHhhhhc
Confidence 99988776
No 17
>COG1422 Predicted membrane protein [Function unknown]
Probab=94.70 E-value=0.24 Score=48.77 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhhc-----CH---HHHHHH---HHHHHHHcCCCCC
Q 010237 119 YAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAG-----DQ---ERIQLE---TARLYKLAGINPL 187 (514)
Q Consensus 119 ~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk~-----D~---qk~qqE---m~kLYKk~gVNPl 187 (514)
.+.-++|+++.+++=+.+- +-.+-.--..||+++|-++++.|++++. |. +|+|++ ++....+-=-
T Consensus 44 ~~p~lvilV~avi~gl~~~-i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk--- 119 (201)
T COG1422 44 LPPHLVILVAAVITGLYIT-ILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMK--- 119 (201)
T ss_pred cccHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 4455666666666554321 1122233458999999999999988752 32 234433 3333332100
Q ss_pred cCchHHHHHHHHHHHHHHHHHhhh
Q 010237 188 AGCLPTLATIPVWIGLYRALSNVA 211 (514)
Q Consensus 188 ~GCLP~LIQIPIFIgLY~vLr~~a 211 (514)
-.+-||+.++++.|-+|-=++...
T Consensus 120 ~qfkPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 120 MQFKPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 134477777776666665555543
No 18
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=93.92 E-value=1.3 Score=48.47 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=37.7
Q ss_pred cchHHHHHHHHHHHHHH--------HHHhhhhhhHhHHHHHhhhHHHHHHHHHHHHhcCCCCCCccchhhhhh
Q 010237 288 PNMKSSQALTNFLPLMI--------GYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKD 352 (514)
Q Consensus 288 p~~k~~k~mm~~mPlmi--------~~f~~~~PaGL~LYWitSNlfsiiQq~iL~k~~~~k~Pl~~~~~i~k~ 352 (514)
..+..+-.++-+|++++ +++.+++-+++. +-+-+++...+++++|....+..+..+..++
T Consensus 225 k~m~~m~~~~Pim~~~~g~~~~~PaallLYWv~snlw-----tl~Qq~i~~~~l~~~~P~~~~~~~~~~~~~~ 292 (429)
T PRK00247 225 KFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLW-----TLIQNIIMYLILERKYPLTDEFKEHHAEQRA 292 (429)
T ss_pred HHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHhhHH-----HHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 34555555555555442 334556666642 3344556678999999999999988755444
No 19
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=76.86 E-value=65 Score=38.08 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=44.1
Q ss_pred HHHHHHHhhhccccH--HHHHHHHHHHhhcHHHHHHHHHhhcCHHH----HHHHHHHHHHHcCCCCCcCchHHHHHHHHH
Q 010237 127 LLTVIVKAATFPLTK--KQVESSMAMRSLAPQVKAIQERYAGDQER----IQLETARLYKLAGINPLAGCLPTLATIPVW 200 (514)
Q Consensus 127 llTllVRllllPL~i--kQ~kS~aKMq~LqPel~~IqeKyk~D~qk----~qqEm~kLYKk~gVNPl~GCLP~LIQIPIF 200 (514)
.++|++=.+++-+.+ -++++++-|+++| +||-+.+.=++| .++..+++.+-|+= .||=|+---+|++
T Consensus 577 GlAIILlTIIVRLlLlPLtiKS~kSmaKMq----~LQPemqeIQeKYKdD~qK~QqEmMkLYKe---~GVNPl~GCLPmL 649 (795)
T PRK01001 577 GISIILLTVFLKLLLYPLNAWSIRSMRRMQ----KLSPYIQEIQQKYKKEPKRAQMEIMALYKT---NKVNPITGCLPLL 649 (795)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhhHHHHHHHHHhHhHHHHHHHHHHHHHHH---cCCCchHHHHHHH
Confidence 444444445544443 3566666665444 455444433333 34444555555543 3777888888888
Q ss_pred --HHHHHHHHhhh
Q 010237 201 --IGLYRALSNVA 211 (514)
Q Consensus 201 --IgLY~vLr~~a 211 (514)
|=+|.++-++.
T Consensus 650 IQmPIFfALY~vL 662 (795)
T PRK01001 650 IQLPFLIAMFDLL 662 (795)
T ss_pred HHHHHHHHHHHHH
Confidence 66777777664
No 20
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=62.45 E-value=2.3e+02 Score=30.63 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhhcc----cCcchHHHHHHHHHHHHhhhccccH--HHHHHHHHHHhhcHHHHHHHHHhhcCHHHH--
Q 010237 100 VMETVLKVLKDGMSTLH----VPYAYGFAIILLTVIVKAATFPLTK--KQVESSMAMRSLAPQVKAIQERYAGDQERI-- 171 (514)
Q Consensus 100 ~me~vL~~L~~~L~~ih----~~~~WGlAIIllTllVRllllPL~i--kQ~kS~aKMq~LqPel~~IqeKyk~D~qk~-- 171 (514)
+.+.+..++.+++..+| .+.++|++-++..+++=+++ -+.+ -..+++ .-+-+|++||-+.+.=++++
T Consensus 104 f~~~~v~P~~~il~~i~~~~~~~~~~G~~w~laII~~Tiiv-RlillPl~~k~~----~s~~km~~lqPel~~Iq~Kyk~ 178 (357)
T PRK02201 104 FYGLFVYPIAQIILSIMASQSLSELYGWSTILAIIVVVLII-RLISFLITFKST----FNQEKQEELQGKKAKIDAKYKD 178 (357)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHhc
Confidence 45667777888787773 45678888776666655544 3333 344444 33445556666555433333
Q ss_pred --------HHHHHHHHHHcCCCCCcCchHHHHHHHHH--HHHHHHHHhhh
Q 010237 172 --------QLETARLYKLAGINPLAGCLPTLATIPVW--IGLYRALSNVA 211 (514)
Q Consensus 172 --------qqEm~kLYKk~gVNPl~GCLP~LIQIPIF--IgLY~vLr~~a 211 (514)
++..++..+-|+ -.||=|+---+|++ +-++.++.++.
T Consensus 179 ~~~d~~~~~k~q~e~~~Lyk---k~ginP~~gclP~LiQ~Pif~aly~vl 225 (357)
T PRK02201 179 YKKDKQMKQRKQQEIQELYK---KHNISPFSPFVQMFVTLPIFIAVYRVV 225 (357)
T ss_pred ccCCHHHHHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 122233344433 23888887788888 55777777765
No 21
>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.
Probab=57.20 E-value=18 Score=35.08 Aligned_cols=38 Identities=34% Similarity=0.584 Sum_probs=22.8
Q ss_pred HHHHHHHHHH-cCCCCCcCchHH----------HHHHHHHHHHHHHHHh
Q 010237 172 QLETARLYKL-AGINPLAGCLPT----------LATIPVWIGLYRALSN 209 (514)
Q Consensus 172 qqEm~kLYKk-~gVNPl~GCLP~----------LIQIPIFIgLY~vLr~ 209 (514)
..++.+|||| +|++|-+|.||. -|+-=+|+.+|+.+..
T Consensus 37 ~~rl~~Lykel~G~sppkG~lP~S~~wf~t~~~~ihaSlf~~lY~~l~~ 85 (175)
T PF05280_consen 37 RERLRRLYKELHGVSPPKGMLPFSTDWFMTWQPNIHASLFMNLYRFLRK 85 (175)
T ss_dssp HHHHHHHHHHHCSS----S-----THHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCchhHHhcchHHHHHHHHHHHHHHHHh
Confidence 3456799999 899999999883 3677778888877764
No 22
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=56.23 E-value=54 Score=33.35 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=46.3
Q ss_pred cCcchHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHH------------HHhhcCHHHHHHHHHHHHHHcCC
Q 010237 117 VPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQ------------ERYAGDQERIQLETARLYKLAGI 184 (514)
Q Consensus 117 ~~~~WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~Iq------------eKyk~D~qk~qqEm~kLYKk~gV 184 (514)
++..|+.++++-.+++=.+++-.+.++++ .-.++.+++. |-...|+ +.++|+++..|..
T Consensus 21 ~p~y~~~~filYfiv~~~i~~~~~~Rs~r------r~~~~~~Ei~~g~~L~eEk~~~kl~~kD~-el~~E~~~~~k~~-- 91 (233)
T PF09973_consen 21 FPQYYFEVFILYFIVFFGIMIVMGIRSYR------RGRKPRSEISKGRPLFEEKNANKLMEKDK-ELQKEYKKQMKAS-- 91 (233)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcc------CCcccHHHHhcCCcccccccHHHHHHhCH-HHHHHHHHHHHHH--
Confidence 35567778888777777777777766666 1122233331 1111233 3566888877762
Q ss_pred CCCcCchHHHHHHHHHHHHHHHHHhh
Q 010237 185 NPLAGCLPTLATIPVWIGLYRALSNV 210 (514)
Q Consensus 185 NPl~GCLP~LIQIPIFIgLY~vLr~~ 210 (514)
+++ |+-+||++.++..+...
T Consensus 92 -----~~~-ll~~~i~ii~~~~~~~~ 111 (233)
T PF09973_consen 92 -----MMN-LLILPIYIILFFLLYPY 111 (233)
T ss_pred -----HHH-HHHHHHHHHHHHHHHHh
Confidence 343 34478888777777654
No 23
>COG1422 Predicted membrane protein [Function unknown]
Probab=55.36 E-value=2.1e+02 Score=28.71 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=41.6
Q ss_pred HHHHhhcHHHHHHHH--------HhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhh
Q 010237 148 MAMRSLAPQVKAIQE--------RYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVAD 212 (514)
Q Consensus 148 aKMq~LqPel~~Iqe--------Kyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr~~a~ 212 (514)
..|+++|-+.++.|+ |.+..++++.+.+.++.|.. ..|+. .-.++.||+|.=+++-+.....
T Consensus 79 k~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q-fkPM~--~~~v~tI~~F~Wl~~~~~~~~~ 148 (201)
T COG1422 79 KMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ-FKPML--YISVLTIPFFAWLRWFVGTGGY 148 (201)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH--HHHHHHHHHHHHHHHHHccCcc
Confidence 455678888888775 33445556655555555543 33864 3456889999999999987754
No 24
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=55.24 E-value=45 Score=31.38 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHhhhcccc-----HHHHHHHHHHHhhcHHHHHHHHHh
Q 010237 120 AYGFAIILLTVIVKAATFPLT-----KKQVESSMAMRSLAPQVKAIQERY 164 (514)
Q Consensus 120 ~WGlAIIllTllVRllllPL~-----ikQ~kS~aKMq~LqPel~~IqeKy 164 (514)
|.-++|+++.++.-++.-=+. ...-+-..++++++-+.+++++..
T Consensus 14 P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 63 (168)
T PF01956_consen 14 PITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNG 63 (168)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcC
Confidence 454555555555444321111 122333445555666666665543
No 25
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=38.73 E-value=5.2e+02 Score=27.65 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccCcchH----------HHHHHHHHHHHhhhccccH--HHHHHHHHHHhhcHHHHHHHH
Q 010237 95 SGITNVMETVLKVLKDGMSTLHVPYAYG----------FAIILLTVIVKAATFPLTK--KQVESSMAMRSLAPQVKAIQE 162 (514)
Q Consensus 95 ~~i~~~me~vL~~L~~~L~~ih~~~~WG----------lAIIllTllVRllllPL~i--kQ~kS~aKMq~LqPel~~Iqe 162 (514)
+++.+++..++.++.|.++.+-..+.|. ++- .++|++=.+++-+.+ -..++.+.+ -+|++||-
T Consensus 2 ~~~~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w-~~aIi~~Ti~vR~~l~Pl~i~q~~~~----~km~~lqP 76 (329)
T PRK01315 2 DGLADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTW-VLSIVGLVIVIRALLIPLFVKQIKSQ----RNMQEIQP 76 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHccH
Confidence 5677788888888888775442111122 222 233444344444333 344444333 34555655
Q ss_pred HhhcCHHHHHH---HH-HHHHHHcCCCCCcCchHHHHHHHHH--HHHHHHHHhhhh
Q 010237 163 RYAGDQERIQL---ET-ARLYKLAGINPLAGCLPTLATIPVW--IGLYRALSNVAD 212 (514)
Q Consensus 163 Kyk~D~qk~qq---Em-~kLYKk~gVNPl~GCLP~LIQIPIF--IgLY~vLr~~a~ 212 (514)
+.+.=+++++. ++ ++..+-|+= .||=|+---+|++ +-+|.++.++..
T Consensus 77 e~~~iq~kyk~~~~~~~~e~~~Lykk---~ginp~~gclp~liQ~Pif~alf~~l~ 129 (329)
T PRK01315 77 KMKKIQEKYKGDRERMSQEMMKLYKE---TGTNPLSSCLPLLLQMPIFFALYRVLD 129 (329)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 55443443322 22 222333322 2787877777876 557777776654
No 26
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=32.10 E-value=45 Score=35.10 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhh
Q 010237 90 NSDWLSGITNVMETVLKVLKDG 111 (514)
Q Consensus 90 ~~~w~~~i~~~me~vL~~L~~~ 111 (514)
+-|||.+|+.||-++|+++|.+
T Consensus 343 DyGw~~~iakPlf~lL~~~~~~ 364 (366)
T TIGR03593 343 DYGWLWFIAKPLFWLLDFFHSL 364 (366)
T ss_pred eeecHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999874
No 27
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=29.68 E-value=1.4e+02 Score=31.08 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHH
Q 010237 159 AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALS 208 (514)
Q Consensus 159 ~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr 208 (514)
.|++-|++|+|++++.+++=..=+|++|.-|. +..|+--++.
T Consensus 39 ~L~KlY~~d~e~~~~Alkrhl~fFNT~p~~~~--------~I~Gi~~amE 80 (271)
T TIGR00828 39 AIKKLYPDDKAGRSAALKRHLEFFNTHPNLVG--------PIMGVTAAME 80 (271)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhhh--------HHHHHHHHHH
Confidence 44556888877776666554445799986443 3355555553
No 28
>KOG4819 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.68 E-value=1e+02 Score=27.67 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010237 382 PRPGEKFKQIREQEARRRQQREEEKRKAAEA 412 (514)
Q Consensus 382 ~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 412 (514)
-.|..+..+++|.++.+++++|+.+.+..|+
T Consensus 33 qk~~~~~~~~qeK~a~k~~Ere~~r~~R~e~ 63 (106)
T KOG4819|consen 33 NKPEIRNMKRQEKAAQKAAEREKVRADRDEQ 63 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3677889999999999999999866665555
No 29
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.63 E-value=1.7e+02 Score=27.54 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=6.1
Q ss_pred hhcHHHHHHHHH
Q 010237 152 SLAPQVKAIQER 163 (514)
Q Consensus 152 ~LqPel~~IqeK 163 (514)
.+|-||++.+.+
T Consensus 38 ~~q~ELe~~K~~ 49 (138)
T COG3105 38 KLQYELEKVKAQ 49 (138)
T ss_pred HHHHHHHHHHHH
Confidence 344566555543
No 30
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.48 E-value=6.1e+02 Score=25.39 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=12.0
Q ss_pred hhhhHhHHHHHhhhHHHHHH
Q 010237 310 SVPSGLSLYWFTNNLLSTAQ 329 (514)
Q Consensus 310 ~~PaGL~LYWitSNlfsiiQ 329 (514)
..-..+++-|+++-+-+-+-
T Consensus 69 klLLiIvFllLTaPVaSHaI 88 (197)
T PRK12585 69 RVLLAVLFIFLTTPVASHLI 88 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777666543
No 31
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=28.24 E-value=4.1e+02 Score=23.71 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=19.9
Q ss_pred HHHHHHhhhccccHHH------HHHHHHHHhhcHHHHHHHHHhh
Q 010237 128 LTVIVKAATFPLTKKQ------VESSMAMRSLAPQVKAIQERYA 165 (514)
Q Consensus 128 lTllVRllllPL~ikQ------~kS~aKMq~LqPel~~IqeKyk 165 (514)
+.+++=++++|+.... .+...-..-.+-++.++.+...
T Consensus 10 ~~~a~~~v~~pl~r~~~~~~~~~~~~~n~~iyr~qL~ELe~d~~ 53 (117)
T TIGR03142 10 TLVALLFLLLPLLRRRRAAATVDRDELNLAVYRDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335667776421 1122334457777888866554
No 32
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=27.78 E-value=1.5e+02 Score=30.69 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=23.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCc
Q 010237 159 AIQERYAGDQERIQLETARLYKLAGINPLAGC 190 (514)
Q Consensus 159 ~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GC 190 (514)
.|+|-|++|+|++++.+++=..=+|++|.-|+
T Consensus 41 ~L~KlY~~~~e~~~~Al~rHl~ffNT~p~~~~ 72 (263)
T PRK09855 41 ILKKIYKDDKPGLSAAMKDNLEFINTHPNLVG 72 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhhh
Confidence 44556888888877777666666899997554
No 33
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=25.38 E-value=4.4e+02 Score=22.94 Aligned_cols=18 Identities=22% Similarity=0.586 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010237 261 AYLVLPVLLVVSQYISVK 278 (514)
Q Consensus 261 py~ILPIL~~~s~fls~~ 278 (514)
..+++|+++.+...+...
T Consensus 7 vlfi~Plli~i~sI~Gt~ 24 (82)
T PF10852_consen 7 VLFILPLLIIIISIIGTY 24 (82)
T ss_pred HHHHhhHHHHHHHHHHhh
Confidence 578999998877666544
No 34
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.32 E-value=6.4e+02 Score=24.55 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHH-------hhcCHHHHHHHHHH-HHHHcCCCCC-cCchHHHHHHHHHHHHHHHHHhh
Q 010237 143 QVESSMAMRSLAPQVKAIQER-------YAGDQERIQLETAR-LYKLAGINPL-AGCLPTLATIPVWIGLYRALSNV 210 (514)
Q Consensus 143 Q~kS~aKMq~LqPel~~IqeK-------yk~D~qk~qqEm~k-LYKk~gVNPl-~GCLP~LIQIPIFIgLY~vLr~~ 210 (514)
..+......++-|+|-+=|++ |+ |+++..+|+-+ +=|+...+-- .-++..+-..=+|+++|..+..+
T Consensus 24 e~~~e~~L~eil~~LleaQk~G~tA~~lfG-~P~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi 99 (206)
T PF06570_consen 24 EEEIEELLEEILPHLLEAQKKGKTARQLFG-DPKEYADELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGI 99 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHcC-CHHHHHHHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666655553 34 77665555433 3222221110 12233334445566666666654
No 35
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=24.39 E-value=1.3e+02 Score=30.77 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHH
Q 010237 157 VKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPT 193 (514)
Q Consensus 157 l~~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~ 193 (514)
+.++-++-.-|++++-..+++.|+++|+.|+.|.-|.
T Consensus 17 ~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~ 53 (231)
T PF09958_consen 17 WSRILRGEVLDREELVELLREVYEENGIEPFRGLSPP 53 (231)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCcc
Confidence 3444444344788899999999999999999998763
No 36
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=23.23 E-value=2.9e+02 Score=31.05 Aligned_cols=106 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred cchHHHHHHH--HHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhh-----cCHHHHHHHHHHHHHHc--------C
Q 010237 119 YAYGFAIILL--TVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYA-----GDQERIQLETARLYKLA--------G 183 (514)
Q Consensus 119 ~~WGlAIIll--TllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk-----~D~qk~qqEm~kLYKk~--------g 183 (514)
.+||+..|+. .+-+=+|++|=++.-+|+.+-+...+|.--+=+.+.+ .+.+.....+.++-++. +
T Consensus 55 ~SwWfl~iivlL~VSLv~C~lpr~~~~~ra~r~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~ 134 (478)
T COG1333 55 SSWWFLAIIVLLGVSLVGCSLPRFPALYRALRAKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGS 134 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHhhcccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccc
Confidence 4677654444 4444457899999888888776666665322222222 22222222233332222 2
Q ss_pred CCCC--cC----chHHHHHHHHHHHHHHHHHhhhhhccccccceeccCC
Q 010237 184 INPL--AG----CLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSL 226 (514)
Q Consensus 184 VNPl--~G----CLP~LIQIPIFIgLY~vLr~~a~~gl~t~gFLWi~DL 226 (514)
.+-. +| .-|++..+-+.+.|--++-.+..+|+..+. |++|-
T Consensus 135 ~~i~AeKG~~~r~G~ii~HiaLliil~Gal~~~~~~Gm~~~~--~V~~G 181 (478)
T COG1333 135 VSIAAEKGRFSRWGPIIFHIALLIILVGALLDFFYEGMVVGE--IVPDG 181 (478)
T ss_pred eeEEeccccccchhhHHHHHHHHHHHHHHHHhhcccceeEeE--EecCC
Confidence 2221 13 447888888888888888764334443322 77654
No 37
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=23.05 E-value=1.9e+02 Score=30.19 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHH
Q 010237 159 AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALS 208 (514)
Q Consensus 159 ~IqeKyk~D~qk~qqEm~kLYKk~gVNPl~GCLP~LIQIPIFIgLY~vLr 208 (514)
.|++=|++|+|++++.+++=..=+|++|.-| |+..|+--++.
T Consensus 49 ~LkKlY~~d~e~~~~Al~Rhl~fFNT~p~~~--------~~I~Gi~~amE 90 (282)
T PRK11103 49 AIRRLYPENNEARKQAIKRHLEFFNTHPYVA--------APILGVTLAME 90 (282)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCchhh--------hHHHHHHHHHH
Confidence 3455688888777666666555579998643 33356555554
No 38
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.91 E-value=3.2e+02 Score=29.71 Aligned_cols=41 Identities=29% Similarity=0.487 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHHHHHhh---cCHH
Q 010237 124 AIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYA---GDQE 169 (514)
Q Consensus 124 AIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~IqeKyk---~D~q 169 (514)
+++++.+++=++=++...+++....||. -+++++.|| |||+
T Consensus 196 ~~~~~~liia~~D~~~qr~~~~k~lkMt-----KqEVKdE~K~sEGdPe 239 (363)
T COG1377 196 AVLLLLLIVAAFDYFYQRFQYIKKLKMT-----KQEVKDEYKQSEGDPE 239 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCc-----HHHHHHHHhhccCChh
Confidence 3444444444445666667776665653 357777787 4765
No 39
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.10 E-value=3.3e+02 Score=29.82 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhhhccccHHHHHHHHHHHhhcHHHHHH--HHHhhc--CHH--HHHHHHHHHHHHcCCCCCc
Q 010237 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAI--QERYAG--DQE--RIQLETARLYKLAGINPLA 188 (514)
Q Consensus 121 WGlAIIllTllVRllllPL~ikQ~kS~aKMq~LqPel~~I--qeKyk~--D~q--k~qqEm~kLYKk~gVNPl~ 188 (514)
...|+|+..++...+.+|+.+..+-.-+--+..+|--.++ ++.|.. +.+ +.-.|+.+.-++-++.+++
T Consensus 277 ~a~A~iI~~lc~~~l~~pIrw~~~~~~kv~r~fkpl~rRlLtEeEYeeQaeveT~kaLaeLReycnkpd~~~Wk 350 (452)
T KOG3817|consen 277 AAIAAIIMVLCFVALYFPIRWTNQIKFKVRRRFKPLKRRLLTEEEYEEQAEVETSKALAELREYCNKPDCKQWK 350 (452)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhh
Confidence 3457788888888899999986543221122233332222 345542 222 3334566667777777765
No 40
>KOG4075 consensus Cytochrome c oxidase, subunit IV/COX5b [Energy production and conversion]
Probab=20.89 E-value=2.1e+02 Score=27.85 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=43.5
Q ss_pred HHHHhhcHHHHHHHHHhhcCHHHH-HHHHHHHHH----H------cCCCCCc---CchHHHHHHHHHHHHHHHHH
Q 010237 148 MAMRSLAPQVKAIQERYAGDQERI-QLETARLYK----L------AGINPLA---GCLPTLATIPVWIGLYRALS 208 (514)
Q Consensus 148 aKMq~LqPel~~IqeKyk~D~qk~-qqEm~kLYK----k------~gVNPl~---GCLP~LIQIPIFIgLY~vLr 208 (514)
.+-.++.+++++|++|-++|=..+ .+|..+||+ + .+.|=++ ||...++=+-|++++|.-++
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~ 123 (167)
T KOG4075|consen 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNRGSNEWKTVFGVAGFFLGLTISVILFGKVR 123 (167)
T ss_pred hhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccCCCCcccchhhHHHHHHHHHHHHHHHHhhe
Confidence 355688999999999999885544 567777774 2 2233333 56677888888888887777
No 41
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=20.48 E-value=4.9e+02 Score=22.27 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=5.2
Q ss_pred hhhhHhHHH
Q 010237 310 SVPSGLSLY 318 (514)
Q Consensus 310 ~~PaGL~LY 318 (514)
+||.|+..|
T Consensus 16 ~fPI~~~~~ 24 (80)
T PF09803_consen 16 FFPIGMFYY 24 (80)
T ss_pred HHHHHHHHh
Confidence 468884433
Done!