Query 010237
Match_columns 514
No_of_seqs 316 out of 1263
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e91_A Paired amphipathic heli 18.3 1.2E+02 0.0042 24.7 4.2 31 156-186 13-45 (85)
2 2cr7_A Paired amphipathic heli 17.1 1.2E+02 0.0041 24.5 3.8 31 156-186 16-48 (80)
3 2czy_A Paired amphipathic heli 14.6 1.6E+02 0.0055 23.5 3.9 31 156-186 10-42 (77)
4 1v54_D Cytochrome C oxidase su 13.2 83 0.0028 28.6 2.0 31 151-181 31-62 (147)
5 1g1e_B SIN3A; four-helix bundl 12.9 1.7E+02 0.0059 24.0 3.7 28 156-183 16-45 (89)
6 2f05_A Paired amphipathic heli 11.5 1.7E+02 0.0059 24.9 3.4 31 156-186 13-45 (105)
7 3vou_A ION transport 2 domain 10.8 4.5E+02 0.015 22.7 6.1 15 172-186 129-143 (148)
8 2y69_D Cytochrome C oxidase su 10.1 1.2E+02 0.0041 28.2 2.0 30 152-181 54-84 (169)
9 2b5u_A Colicin E3; high resolu 9.8 2.4E+02 0.0084 30.5 4.5 20 383-402 291-310 (551)
10 1z65_A PRPLP, prion-like prote 9.2 2.1E+02 0.007 19.4 2.3 16 119-134 6-21 (30)
No 1
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=18.35 E-value=1.2e+02 Score=24.67 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.5
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 010237 156 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 186 (514)
Q Consensus 156 el~~IqeKyk~D~qk~q--qEm~kLYKk~gVNP 186 (514)
-+++|++++.++++..+ .++|+-||+..++-
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~ 45 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHccccc
Confidence 46789999999988665 48899999998764
No 2
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=17.06 E-value=1.2e+02 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 010237 156 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 186 (514)
Q Consensus 156 el~~IqeKyk~D~qk~q--qEm~kLYKk~gVNP 186 (514)
-++++++++.++++... .++|+-||+..++.
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~ 48 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDT 48 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcCCCH
Confidence 46788999999888665 47889999876643
No 3
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=14.63 E-value=1.6e+02 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.390 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 010237 156 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 186 (514)
Q Consensus 156 el~~IqeKyk~D~qk~q--qEm~kLYKk~gVNP 186 (514)
-++++++++.++++... .++|+-||+..++.
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~ 42 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDT 42 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHcCCCH
Confidence 46788999999888665 47888898876653
No 4
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=13.20 E-value=83 Score=28.65 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred HhhcHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 010237 151 RSLAPQVKAIQERYAGDQERI-QLETARLYKL 181 (514)
Q Consensus 151 q~LqPel~~IqeKyk~D~qk~-qqEm~kLYKk 181 (514)
+.|.|++.+|++|.|+|=.++ .+|-.+||+-
T Consensus 31 ~~lt~~i~aLreKeKgdWk~LT~eEKkAlYri 62 (147)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (147)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 346899999999999986555 5566778764
No 5
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=12.88 E-value=1.7e+02 Score=24.01 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcC
Q 010237 156 QVKAIQERYAGDQERIQ--LETARLYKLAG 183 (514)
Q Consensus 156 el~~IqeKyk~D~qk~q--qEm~kLYKk~g 183 (514)
-+++|+++|.++++..+ .++++-|+++.
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 46789999999988665 47788887754
No 6
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=11.53 E-value=1.7e+02 Score=24.92 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcCCCC
Q 010237 156 QVKAIQERYAGDQERIQ--LETARLYKLAGINP 186 (514)
Q Consensus 156 el~~IqeKyk~D~qk~q--qEm~kLYKk~gVNP 186 (514)
-+++|+.+|.++++..+ .++|+-|++..++.
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~ 45 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHT 45 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHhccccc
Confidence 46789999999988665 48899999988775
No 7
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=10.77 E-value=4.5e+02 Score=22.67 Aligned_cols=15 Identities=0% Similarity=-0.248 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCCCC
Q 010237 172 QLETARLYKLAGINP 186 (514)
Q Consensus 172 qqEm~kLYKk~gVNP 186 (514)
.+++.+..++++..+
T Consensus 129 l~~i~~~~~~~~~~~ 143 (148)
T 3vou_A 129 LEAIEKKLAEHSRQG 143 (148)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCc
Confidence 345555666666543
No 8
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.09 E-value=1.2e+02 Score=28.24 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=23.3
Q ss_pred hhcHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 010237 152 SLAPQVKAIQERYAGDQERI-QLETARLYKL 181 (514)
Q Consensus 152 ~LqPel~~IqeKyk~D~qk~-qqEm~kLYKk 181 (514)
.+.|++++|++|.|+|=.++ .+|-.+||+-
T Consensus 54 ~~t~~i~aLreKEKgdWk~LT~eEKKAlYri 84 (169)
T 2y69_D 54 NLSASQKALKEKEKASWSSLSIDEKVELYRL 84 (169)
T ss_dssp CCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhcCCHHHcCHHHHHHHHHH
Confidence 46899999999999986555 5566777764
No 9
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=9.83 E-value=2.4e+02 Score=30.48 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=14.5
Q ss_pred CCChhhHHHHHHHHHHHHHH
Q 010237 383 RPGEKFKQIREQEARRRQQR 402 (514)
Q Consensus 383 ~~g~~f~~~~~~~~~~~~~~ 402 (514)
..-..++|-.|+|.|++|+-
T Consensus 291 lt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 291 LSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 34566778888888888775
No 10
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=9.20 E-value=2.1e+02 Score=19.43 Aligned_cols=16 Identities=13% Similarity=0.114 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHHHh
Q 010237 119 YAYGFAIILLTVIVKA 134 (514)
Q Consensus 119 ~~WGlAIIllTllVRl 134 (514)
+.||+||++..++--+
T Consensus 6 G~~wlai~c~LLfs~L 21 (30)
T 1z65_A 6 GTWWVAILCMLLASHL 21 (30)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHhhH
Confidence 3699999887776554
Done!