Query 010237
Match_columns 514
No_of_seqs 316 out of 1263
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 22:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010237.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010237hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2avue1 e.64.1.1 (E:5-160) Fla 25.5 37 0.0027 29.0 4.9 37 173-209 34-81 (156)
2 d1v54d_ f.23.1.1 (D:) Mitochon 12.2 37 0.0027 28.8 1.5 31 151-181 28-59 (144)
3 d2f05a1 a.59.1.1 (A:1-85) Sin3 10.0 1.2E+02 0.0091 22.4 3.9 32 156-187 13-46 (85)
4 d1lvaa3 a.4.5.35 (A:511-574) C 8.3 89 0.0065 22.1 2.3 23 166-188 3-25 (64)
5 d1ryka_ a.60.11.1 (A:) Hypothe 8.0 1.5E+02 0.011 21.5 3.4 26 158-183 41-66 (69)
6 d1s5qb_ a.59.1.1 (B:) Sin3A {M 7.8 1.7E+02 0.012 21.9 3.9 28 156-183 16-45 (89)
7 d2e50a1 d.305.1.1 (A:1-222) Pr 7.8 2.1E+02 0.015 24.8 5.1 31 141-171 26-56 (222)
8 d2axtk1 f.23.36.1 (K:10-46) Ph 5.6 1.2E+02 0.0087 19.8 1.5 17 299-315 18-34 (37)
9 d1j8ba_ d.222.1.1 (A:) Hypothe 5.0 1.8E+02 0.013 21.9 2.5 19 147-165 5-23 (92)
10 d1v54m_ f.23.7.1 (M:) Mitochon 4.8 2.8E+02 0.02 18.6 3.1 19 303-325 20-38 (43)
No 1
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC {Escherichia coli [TaxId: 562]}
Probab=25.49 E-value=37 Score=29.02 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=29.2
Q ss_pred HHHHHHHHH-cCCCCCcCchH----------HHHHHHHHHHHHHHHHh
Q 010237 173 LETARLYKL-AGINPLAGCLP----------TLATIPVWIGLYRALSN 209 (514)
Q Consensus 173 qEm~kLYKk-~gVNPl~GCLP----------~LIQIPIFIgLY~vLr~ 209 (514)
.++.+|||| +|..|-+|.+| .-|+-=+|+.+|+-+..
T Consensus 34 ~~l~rLykE~~g~sppkG~lP~S~dWf~t~~~nihsSlf~~iY~~l~~ 81 (156)
T d2avue1 34 GRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLK 81 (156)
T ss_dssp HHHHHHHHHHSSSCCCCSCCCCCTHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcchhhcccchhhHHHHHHHHHHHHHh
Confidence 457899998 88999999877 34777888888877764
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.24 E-value=37 Score=28.75 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=24.8
Q ss_pred HhhcHHHHHHHHHhhcCHHHH-HHHHHHHHHH
Q 010237 151 RSLAPQVKAIQERYAGDQERI-QLETARLYKL 181 (514)
Q Consensus 151 q~LqPel~~IqeKyk~D~qk~-qqEm~kLYKk 181 (514)
+++-|++.+|++|.++|=.++ .+|-.+||+-
T Consensus 28 ~e~t~ei~aLreKeKgdWk~LS~eEKkalYri 59 (144)
T d1v54d_ 28 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 59 (144)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhCChhhcCHHHHHHHHHH
Confidence 578899999999999986555 5677788864
No 3
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.98 E-value=1.2e+02 Score=22.43 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCHHHHHH--HHHHHHHHcCCCCC
Q 010237 156 QVKAIQERYAGDQERIQL--ETARLYKLAGINPL 187 (514)
Q Consensus 156 el~~IqeKyk~D~qk~qq--Em~kLYKk~gVNPl 187 (514)
-++++++++.++++..++ ++|..|+++-++..
T Consensus 13 yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~ 46 (85)
T d2f05a1 13 YVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTK 46 (85)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhhcccc
Confidence 467899999988887654 78899998877654
No 4
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=8.35 E-value=89 Score=22.13 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCc
Q 010237 166 GDQERIQLETARLYKLAGINPLA 188 (514)
Q Consensus 166 ~D~qk~qqEm~kLYKk~gVNPl~ 188 (514)
.|++++.+.+..+|++.|+.|-.
T Consensus 3 ~~q~~l~~~I~~~~~~~g~~PP~ 25 (64)
T d1lvaa3 3 ETQKKLLKDLEDKYRVSRWQPPS 25 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCB
T ss_pred HHHHHHHHHHHHHHHHcCCCCCc
Confidence 45678888999999999999853
No 5
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli [TaxId: 562]}
Probab=7.97 E-value=1.5e+02 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHcC
Q 010237 158 KAIQERYAGDQERIQLETARLYKLAG 183 (514)
Q Consensus 158 ~~IqeKyk~D~qk~qqEm~kLYKk~g 183 (514)
-++|++|...++...+++.++.++|.
T Consensus 41 Gk~Q~~yG~~kd~a~~~v~~~~~r~~ 66 (69)
T d1ryka_ 41 GKIQERYGYQKDQAEKEVVDWETRNE 66 (69)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999988865
No 6
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.80 E-value=1.7e+02 Score=21.91 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCHHHHH--HHHHHHHHHcC
Q 010237 156 QVKAIQERYAGDQERIQ--LETARLYKLAG 183 (514)
Q Consensus 156 el~~IqeKyk~D~qk~q--qEm~kLYKk~g 183 (514)
-++++++++.+++++.. .++|+.|++..
T Consensus 16 yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~ 45 (89)
T d1s5qb_ 16 YVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhh
Confidence 46789999998888665 37788887753
No 7
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.78 E-value=2.1e+02 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.260 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHhhcCHHHH
Q 010237 141 KKQVESSMAMRSLAPQVKAIQERYAGDQERI 171 (514)
Q Consensus 141 ikQ~kS~aKMq~LqPel~~IqeKyk~D~qk~ 171 (514)
..+.+....++.+|-++.++++++.....++
T Consensus 26 ~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~l 56 (222)
T d2e50a1 26 KEQQEAIEHIDEVQNEIDRLNEQASEEILKV 56 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888776543333
No 8
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.56 E-value=1.2e+02 Score=19.78 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhhhHh
Q 010237 299 FLPLMIGYFALSVPSGL 315 (514)
Q Consensus 299 ~mPlmi~~f~~~~PaGL 315 (514)
++|++++.+++-+-+++
T Consensus 18 iIPv~f~lLafVWQAaV 34 (37)
T d2axtk1 18 VIPVLFLALAFVWQAAV 34 (37)
T ss_dssp GHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 9
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=5.05 E-value=1.8e+02 Score=21.88 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=11.2
Q ss_pred HHHHHhhcHHHHHHHHHhh
Q 010237 147 SMAMRSLAPQVKAIQERYA 165 (514)
Q Consensus 147 ~aKMq~LqPel~~IqeKyk 165 (514)
+.+++++|-+|+++|++.+
T Consensus 5 mkqaq~mq~~m~~~q~eL~ 23 (92)
T d1j8ba_ 5 MKQAQQMQEKMQKMQEEIA 23 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666554
No 10
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.79 E-value=2.8e+02 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.677 Sum_probs=11.9
Q ss_pred HHHHHhhhhhhHhHHHHHhhhHH
Q 010237 303 MIGYFALSVPSGLSLYWFTNNLL 325 (514)
Q Consensus 303 mi~~f~~~~PaGL~LYWitSNlf 325 (514)
.+.++++..|+| |+.|++=
T Consensus 20 t~~f~~~L~PaG----wVLshLe 38 (43)
T d1v54m_ 20 SVTFLSFLLPAG----WVLYHLD 38 (43)
T ss_dssp HHHHHHHHHHHH----HHHHTHH
T ss_pred HHHHHHHHccHH----HHHHHHH
Confidence 334455567999 7766653
Done!