BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010240
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JXH|A Chain A, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium
pdb|1JXH|B Chain B, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium
pdb|1JXI|A Chain A, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium Complexed With
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|1JXI|B Chain B, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium Complexed With
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
Length = 288
Score = 201 bits (511), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 114/265 (43%), Positives = 155/265 (58%), Gaps = 2/265 (0%)
Query: 17 KMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDF 76
M+ + LT+AG+D GAGIQADLK +A G Y +VITA+ A+NT GVQ V + DF
Sbjct: 22 HMQRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAENTCGVQSVYRIEPDF 81
Query: 77 VAAQLKSVLSDMQVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGP 136
VAAQL SV SD+++D K GML TD+V+ + + L VR +V+D VM++ SGD L P
Sbjct: 82 VAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLLSP 141
Query: 137 STITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGD 196
S I LR LLP ++TPN+ EA+ALL T +M + + L +G VL+KGG
Sbjct: 142 SAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLMKGGH 201
Query: 197 LPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKC 256
L D+ D F E + RVNT+NTHGTGCTL++ +AA + V AK
Sbjct: 202 LEDAQSP-DWLFTREGEQRFSAPRVNTKNTHGTGCTLSAALAALRPRHRSWGETVNEAKA 260
Query: 257 FVETALDYSKDIVIGSGPQGPFDHL 281
++ AL + + +G G GP H
Sbjct: 261 WLSAALAQADTLEVGKGI-GPVHHF 284
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/274 (38%), Positives = 155/274 (56%), Gaps = 6/274 (2%)
Query: 18 MKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVP--ED 75
M + LT+AGSDS GAGIQADLK + VY T +T + A + + P D
Sbjct: 1 MSMHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVIVAMDPNNSWNHQVFPIDTD 60
Query: 76 FVAAQLKSVLSDMQVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAG 135
+ AQL ++ + VD +KTGMLP+ D++++ +++ E ++ +V+DPVMV + +
Sbjct: 61 TIRAQLATITDGIGVDAMKTGMLPTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLY 120
Query: 136 PSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGG 195
P LRE L P+A ++TPN+ EAS L G ++ TV DM AAK +H LG + V++ GG
Sbjct: 121 PEHAQALREQLAPLATVITPNLFEASQLSGMDELKTVDDMIEAAKKIHALGAQYVVITGG 180
Query: 196 DLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAK 255
AVD+ +DGE L S ++T THG GCT ++ + AELAKG+ + A+ AK
Sbjct: 181 GKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAKGAEVKEAIYAAK 240
Query: 256 CFVETALDYSKDIVIGSGPQGPFDH-LLRLKSTS 288
F+ A+ S + + GP H LRL S
Sbjct: 241 EFITAAIKESFPL---NQYVGPTKHSALRLNQQS 271
>pdb|1XI3|A Chain A, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
pdb|1XI3|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus
Furiosus Pfu-1255191-001
Length = 215
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 127/209 (60%), Gaps = 9/209 (4%)
Query: 300 SDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICC 359
+ L LY +TD + + ++V+ ALEGGAT IQ+R K+A TR E K Q+
Sbjct: 13 NKLKLYVITDRRLKPE-----VESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTR 67
Query: 360 VHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWI 419
+ ++DR+D+ALA DADGV LG DMP A+ + P+ IIG S + EEA +A
Sbjct: 68 EYDALFFVDDRVDVALAVDADGVQLGPEDMPIEVAKEI-APNLIIGASVYSLEEALEAEK 126
Query: 420 DGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSN 479
GA+Y+G G V+PT TK + +GL+GL+ + + K+PVVAIGGI NA +V+K GV
Sbjct: 127 KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVD- 185
Query: 480 LKGVAVVSALFDRECILPESKKLHAVLMD 508
G+AV+SA+ E + +++L ++ +
Sbjct: 186 --GIAVISAVMGAEDVRKATEELRKIVEE 212
>pdb|1UB0|A Chain A, Crystal Structure Analysis Of Phosphomethylpyrimidine
Kinase (Thid) From Thermus Thermophilus Hb8
Length = 258
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/257 (47%), Positives = 162/257 (63%), Gaps = 5/257 (1%)
Query: 24 LTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKS 83
LT+AGSDSG GAG+QADLK GVY ++ +T VTAQNT GVQ V+++P + V AQ++S
Sbjct: 5 LTIAGSDSGGGAGVQADLKVFFRFGVYGTSALTLVTAQNTLGVQRVHLLPPEVVYAQIES 64
Query: 84 VLSDMQVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLR 143
V D + KTG L +V+ + +++ F VR LVVDPVMV+ SGD L L+
Sbjct: 65 VAQDFPLHAAKTGALGDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLAKEAAAALK 124
Query: 144 ENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDA 203
E L P+AD+VTPN EA ALL G + T+ + AAK L LGP+ VL+KGG L + +A
Sbjct: 125 ERLFPLADLVTPNRLEAEALL-GRPIRTLKEAEEAAKALLALGPKAVLLKGGHL-EGEEA 182
Query: 204 VDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETALD 263
VD+ + RV+TRNTHGTGCTL++ IAA LAKG P+ AV AK ++ AL
Sbjct: 183 VDLLATRGGVLRFSAPRVHTRNTHGTGCTLSAAIAALLAKGRPLAEAVAEAKAYLTRALK 242
Query: 264 YSKDIVIGSGPQGPFDH 280
+ +G G GP DH
Sbjct: 243 TAPS--LGHG-HGPLDH 256
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 167/298 (56%), Gaps = 18/298 (6%)
Query: 19 KIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVA 78
K+P VL++AG+D GAGI+AD+K A Y T ITA+ AQ V +N P++ V
Sbjct: 21 KLPTVLSIAGTDPSGGAGIEADVKTITAHRCYAMTCITALNAQTPVKVYSINNTPKEVVF 80
Query: 79 AQLKSVLSDMQVDVVKTGMLPSTDLVKVLLQSLSEFPVR--ALVVDPVMVSTSGDVLAGP 136
L+S L DM+ +V+KTGML + ++VL + L + LVVDPV+V+TSG LAG
Sbjct: 81 QTLESNLKDMKCNVIKTGML-TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAGK 139
Query: 137 STITGLRENLLPMADIVTPNVKEASALLGGMQVVT-VADMCSAAKLLHNLGP-RTVLVKG 194
++ + E + P ADI+TPN+ E LLG + V + D+ AK L + +LVKG
Sbjct: 140 DIVSLITEKVAPFADILTPNIPECYKLLGEERKVNGLQDIFQIAKDLAKITKCSNILVKG 199
Query: 195 GDLPDSSDA----VDIFFDG--EDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248
G +P + + D+ F G + F + + VNT +THGTGCTLAS IA+ LA+G +
Sbjct: 200 GHIPWNDEKEKYITDVLFLGAEQKFIIFKGNFVNTTHTHGTGCTLASAIASNLARGYSLP 259
Query: 249 SAVKVAKCFVETAL----DYSKDIVIGSGPQGPFDHLLRLKSTSRQSHRAEAFNPSDL 302
+V +V+ A+ D +K+ V + GP +H+ ++ + E F SD+
Sbjct: 260 QSVYGGIEYVQNAVAIGCDVTKETVKDN---GPINHVYAVEIPLEKMLSDECFTASDV 314
>pdb|3NL2|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL2|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL5|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NL6|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM3|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Query: 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCV 360
D LY VTDSGM + G+++ V+A L+ G T++Q+REKDADT+ F+E A ++C
Sbjct: 9 DYSLYLVTDSGMIPE-GKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHA 67
Query: 361 HGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQ---A 417
H VPL+INDRID+A+A ADG+H+GQ DMP R L+GPD +IG S PEE +
Sbjct: 68 HNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKM 127
Query: 418 WIDGANYIGCGGVYPTNTKAN 438
D +YIG G ++PT TK N
Sbjct: 128 GPDMVDYIGVGTLFPTLTKKN 148
>pdb|3NM1|A Chain A, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|B Chain B, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|C Chain C, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|D Chain D, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|E Chain E, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
pdb|3NM1|F Chain F, The Crystal Structure Of Candida Glabrata Thi6, A
Bifunctional Enzyme Involved In Thiamin Biosyhthesis Of
Eukaryotes
Length = 540
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Query: 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCV 360
D LY VTDSGM + G+++ V+A L+ G T++Q+REKDADT+ F+E A ++C
Sbjct: 9 DYSLYLVTDSGMIPE-GKTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHA 67
Query: 361 HGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQ---A 417
H VPL+INDRID+A+A ADG+H+GQ DMP R L+GPD +IG S PEE +
Sbjct: 68 HNVPLIINDRIDVAMAIGADGIHVGQDDMPIPMIRKLVGPDMVIGWSVGFPEEVDELSKM 127
Query: 418 WIDGANYIGCGGVYPTNTKAN 438
D +YIG G ++PT TK N
Sbjct: 128 GPDMVDYIGVGTLFPTLTKKN 148
>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase Complexed With A Carboxylated Thiazole
Phosphate
Length = 235
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 45 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 101
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GVS T E QA DGA+Y+G G +YPT TK
Sbjct: 102 KADGIHIGQEDANAKEVRAAIG-DMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKK 160
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 161 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 216
Query: 496 LPES 499
PES
Sbjct: 217 -PES 219
>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 37 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 93
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GVS T E QA DGA+Y+G G +YPT TK
Sbjct: 94 KADGIHIGQEDANAKEVRAAIG-DMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETKK 152
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 153 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 208
Query: 496 LPES 499
PES
Sbjct: 209 -PES 211
>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 36 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 92
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GV+ T E QA DGA+Y+G G +YPT TK
Sbjct: 93 KADGIHIGQEDANAKEVRAAIG-DMILGVAAHTMSEVKQAEEDGADYVGLGPIYPTETKK 151
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 152 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 207
Query: 496 LPES 499
PES
Sbjct: 208 -PES 210
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 35 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 91
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GV+ T E QA DGA+Y+G G +YPT TK
Sbjct: 92 KADGIHIGQEDANAKEVRAAIG-DMILGVAAHTMSEVKQAEEDGADYVGLGPIYPTETKK 150
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 151 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 206
Query: 496 LPES 499
PES
Sbjct: 207 -PES 209
>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 37 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 93
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GV+ T E QA DGA+Y+G G +YPT TK
Sbjct: 94 KADGIHIGQEDANAKEVRAAIG-DMILGVAAHTMSEVKQAEEDGADYVGLGPIYPTETKK 152
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 153 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 208
Query: 496 LPES 499
PES
Sbjct: 209 -PES 211
>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
pdb|1G69|B Chain B, Thiamin Phosphate Synthase
Length = 228
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 107/184 (58%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 38 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 94
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GV+ T E QA DGA+Y+G G +YPT TK
Sbjct: 95 KADGIHIGQEDANAKEVRAAIG-DMILGVAAHTMSEVKQAEEDGADYVGLGPIYPTETKK 153
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 154 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 209
Query: 496 LPES 499
PES
Sbjct: 210 -PES 212
>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase K159a
Length = 235
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 17/184 (9%)
Query: 324 VKAALEGGATIIQLREKDADTR------GFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
V+ AL+GGAT+ Q REK D F E A+A C GVP ++ND +++AL
Sbjct: 45 VQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAA---CREAGVPFIVNDDVELALNL 101
Query: 378 DADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKA 437
ADG+H+GQ D A+ RA +G D I+GVS T E QA DGA+Y+G G +YPT T
Sbjct: 102 KADGIHIGQEDANAKEVRAAIG-DMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTETAK 160
Query: 438 NNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECI 495
+ V G+ ++ V +P+V IGGI I NA+ V++ G GV+++SA+ E
Sbjct: 161 DTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGAD---GVSMISAISQAED- 216
Query: 496 LPES 499
PES
Sbjct: 217 -PES 219
>pdb|3O63|A Chain A, Crystal Structure Of Thiamin Phosphate Synthase From
Mycobacterium Tuberculosis
pdb|3O63|B Chain B, Crystal Structure Of Thiamin Phosphate Synthase From
Mycobacterium Tuberculosis
Length = 243
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 93/202 (46%), Gaps = 20/202 (9%)
Query: 304 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDA---------DTRGFLEAAKAC 354
LY TD+ + + +AAL GG IIQLR+K + R L A +
Sbjct: 32 LYLCTDARRERG---DLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEIL 88
Query: 355 LQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEA 414
+G +NDR DIA A AD +HLGQ D+P AR +L PD +IG S P++
Sbjct: 89 ADAAHRYGALFAVNDRADIARAAGADVLHLGQRDLPVNVARQILAPDTLIGRSTHDPDQV 148
Query: 415 HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKL-----PVVAIGGIGISNA 469
A A+Y G +PT TK GL GL V +A++L P AIGGI
Sbjct: 149 AAAAAGDADYFCVGPCWPTPTKPGRAAPGL-GL--VRVAAELGGDDKPWFAIGGINAQRL 205
Query: 470 SDVMKIGVSNLKGVAVVSALFD 491
V+ G + V +++ D
Sbjct: 206 PAVLDAGARRIVVVRAITSADD 227
>pdb|1YAD|A Chain A, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|B Chain B, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|C Chain C, Structure Of Teni From Bacillus Subtilis
pdb|1YAD|D Chain D, Structure Of Teni From Bacillus Subtilis
pdb|3QH2|A Chain A, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|B Chain B, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|C Chain C, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
pdb|3QH2|D Chain D, Crystal Structure Of Teni From Bacillus Subtilis Complexed
With Product Cthz-P
Length = 221
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 11/192 (5%)
Query: 300 SDLFLYAVTD-SGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQIC 358
S + L+A+TD S ++ R I ++ I +RE+ L+ +
Sbjct: 15 SHMELHAITDDSKPVEELARIII-----TIQNEVDFIHIRERSKSAADILKLLDLIFE-G 68
Query: 359 CVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAW 418
+ L++N R+DIAL V L + RA P IG S + EEA QA
Sbjct: 69 GIDKRKLVMNGRVDIALFSTIHRVQLPSGSFSPKQIRARF-PHLHIGRSVHSLEEAVQAE 127
Query: 419 IDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVS 478
+ A+Y+ G V+ T+ K G+ L + +PV+AIGG+ DV + G
Sbjct: 128 KEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGMTPDRLRDVKQAGAD 187
Query: 479 NLKGVAVVSALF 490
G+AV+S +F
Sbjct: 188 ---GIAVMSGIF 196
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 85 LSDM-QVDVVKTGMLPSTDLVKVLLQSLSEF----PVRALVVDPVM---VSTSGDVLAGP 136
L++M + D V TG + +++ + E P V DPV+ G +
Sbjct: 86 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 145
Query: 137 STITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGD 196
+ +E ++P+ADI+TPN EA LL G ++ + + +LH++GP TV++ D
Sbjct: 146 DLLPVYKEKVVPLADIITPNQFEAE-LLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSD 204
Query: 197 LP 198
LP
Sbjct: 205 LP 206
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 102 DLVKVLLQSLSEFPVRALVVDPVM---VSTSGDVLAGPSTITGLRENLLPMADIVTPNVK 158
D+V+ L Q + P V DPV+ G + + +E ++P+ADI+TPN
Sbjct: 96 DIVQELKQ---QNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPNQF 152
Query: 159 EASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLP 198
EA LL G ++ + + +LH++GP TV++ DLP
Sbjct: 153 EAE-LLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLP 191
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 85 LSDM-QVDVVKTGMLPSTDLVKVLLQSLSEF----PVRALVVDPVM---VSTSGDVLAGP 136
L++M + D V TG + +++ + E P V DPV+ G +
Sbjct: 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 130
Query: 137 STITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGD 196
+ +E ++P+ADI+TPN EA LL G ++ + + +LH++GP TV++ D
Sbjct: 131 DLLPVYKEKVVPLADIITPNQFEAE-LLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSD 189
Query: 197 LP 198
LP
Sbjct: 190 LP 191
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 85 LSDM-QVDVVKTGMLPSTDLVKVLLQSLSEF----PVRALVVDPVM---VSTSGDVLAGP 136
L++M + D V TG + +++ + E P V DPV+ G +
Sbjct: 71 LNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPE 130
Query: 137 STITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGD 196
+ +E ++P+ADI+TPN EA LL G ++ + + +LH++GP TV++ D
Sbjct: 131 DLLPVYKEKVVPLADIITPNQFEAE-LLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSD 189
Query: 197 LP 198
LP
Sbjct: 190 LP 191
>pdb|3ZS7|A Chain A, Crystal Structure Of Pyridoxal Kinase From Trypanosoma
Brucei
Length = 300
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 30/177 (16%)
Query: 95 TGMLPSTDLVKVLLQSLSEFPVRAL----------VVDPVMVSTSGDVLAGPSTITGLRE 144
TG + + D++ + +L E VR L + DPVM G + + RE
Sbjct: 82 TGYINNVDIIGRIRDTLKE--VRELREKEDKKLTFICDPVM-GDDGIMYCKKEVLDAYRE 138
Query: 145 NLLPMADIVTPNVKEASALLGGMQVVTVADMCS---AAKLLHNLGPRTVLVKGGDLPDSS 201
L+P+ADIVTPN EAS L G VTV D+ S AA HN G V++K ++
Sbjct: 139 -LVPLADIVTPNYFEASLLSG----VTVNDLSSAILAADWFHNCGVAHVIIKSFREQENP 193
Query: 202 DAVDIFFDGEDFHELRSSRVN-------TRNTHGTGCTLASCIAAELAKGSPMLSAV 251
+ + ++ E R + R T GTG A+C+ A + PM A+
Sbjct: 194 THLRFLYSVKEGSEAAVRRFSGVVPYHEGRYT-GTGDVFAACLLA-FSHSHPMDVAI 248
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 102 DLVKVLLQSLSEFPVRALVVDPVM---VSTSGDVLAGPSTITGLRENLLPMADIVTPNVK 158
D+V+ L Q + P V DPV+ G + + +E ++P+ADI+TPN
Sbjct: 110 DIVQELKQ---QNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVPLADIITPNQF 166
Query: 159 EASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLP 198
EA LL G ++ + + +LH++GP TV++ DLP
Sbjct: 167 EAE-LLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLP 205
>pdb|1LHP|A Chain A, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHP|B Chain B, Crystal Structure Of Pyridoxal Kinase From Sheep Brain
pdb|1LHR|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1LHR|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Atp
pdb|1RFT|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Amp-
Pcp And Pyridoxamine
pdb|1RFU|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|C Chain C, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|D Chain D, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|E Chain E, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|F Chain F, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|G Chain G, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFU|H Chain H, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
And Plp
pdb|1RFV|A Chain A, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1RFV|B Chain B, Crystal Structure Of Pyridoxal Kinase Complexed With Adp
pdb|1YGJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YGK|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
pdb|1YHJ|A Chain A, Crystal Structure Of Pyridoxal Kinase In Complex With
Roscovitine And Derivatives
Length = 312
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 89 QVDVVKTGMLPSTDLVKVLLQSLSEF----PVRALVVDPVM---VSTSGDVLAGPSTITG 141
Q D V TG + +++ + E P V DPVM + G + +
Sbjct: 76 QYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVMGDQRNGEGAMYVPDDLLPV 135
Query: 142 LRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDL--PD 199
RE ++P+ADI+TPN EA LL G ++ + + +LH++GP TV++ +L P
Sbjct: 136 YREKVVPVADIITPNQFEAE-LLTGRKIHSQEEALEVMDMLHSMGPDTVVITSSNLLSPR 194
Query: 200 SSD 202
SD
Sbjct: 195 GSD 197
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 27/257 (10%)
Query: 36 GIQADLKACAARGVYCS---TVITAVTAQNTAGVQGVNIV----------------PEDF 76
+QAD+ A ++ VY S ++ QN V V V P+++
Sbjct: 13 ALQADIVAVQSQVVYGSVGNSIAVPAIKQNGLNVFAVPTVLLSNTPHYDTFYGGAIPDEW 72
Query: 77 VAAQLKSVLSD---MQVDVVKTGMLPSTDLVKVLLQSLS----EFPVRALVVDPVMVSTS 129
+ L+++ Q+ V TG + + +K+L + L+ + P ++VDPV+
Sbjct: 73 FSGYLRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDID 132
Query: 130 GDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRT 189
+ P R+ LLP+A +TPN+ E L G + + +A LL +
Sbjct: 133 SGIYVKPDLPEAYRQYLLPLAQGITPNIFELEILTGKNCRDLDSAIAAAKSLLSDTLKWV 192
Query: 190 VLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLS 249
V+ ++ + + + + + SRV T + GTG + + + L KG +
Sbjct: 193 VVTSASGNEENQEMQVVVVTADSVNVISHSRVKT-DLKGTGDLFCAQLISGLLKGKALTD 251
Query: 250 AVKVAKCFVETALDYSK 266
AV A V + Y++
Sbjct: 252 AVHRAGLRVLEVMRYTQ 268
>pdb|3MBJ|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (Bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution (Rhombohedral Form)
pdb|3MBH|A Chain A, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|B Chain B, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|C Chain C, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|D Chain D, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|E Chain E, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
pdb|3MBH|F Chain F, Crystal Structure Of A Putative Phosphomethylpyrimidine
Kinase (bt_4458) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.00 A Resolution (orthorhombic Form With
Pyridoxal)
Length = 291
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 8/188 (4%)
Query: 77 VAAQLKSVLSDMQVDVVKTGMLPSTDLVKVLLQSLSEF--PVRALVVDPVMVSTSGDVLA 134
+ A+ K + ++Q D + TG L S ++++ + +F P +V DPV+
Sbjct: 67 IIAEWKKL--EVQFDAIYTGYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTN 124
Query: 135 GPSTITGLRENLLPMADIVTPNVKEASALLGGMQVV--TVADMCSAAKLLHNLGPRTVLV 192
+L+ AD++TPN+ E LL T ++ +LL + GP+ V++
Sbjct: 125 FDXEXVKEXRHLITKADVITPNLTELFYLLDEPYKADSTDEELKEYLRLLSDKGPQVVII 184
Query: 193 KGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTH--GTGCTLASCIAAELAKGSPMLSA 250
+ D ++ + H GTG T S I L +G + A
Sbjct: 185 TSVPVHDEPHKTSVYAYNRQGNRYWKVTCPYLPAHYPGTGDTFTSVITGSLXQGDSLPXA 244
Query: 251 VKVAKCFV 258
+ A F+
Sbjct: 245 LDRATQFI 252
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 136 PSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGG 195
P+ L + LL + DI+TPN EA L G++V D AA++LH G RTVL+ G
Sbjct: 167 PAPARELPDELLALVDIITPNETEAEKLT-GIRVENDEDAAKAAQVLHEKGIRTVLITLG 225
Query: 196 DLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPM 247
S V +GE + RV +T G T + L + P+
Sbjct: 226 -----SRGVWASVNGEG-QRVPGFRVQAVDTIAAGDTFNGALITALLEEKPL 271
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 8/138 (5%)
Query: 113 EFPVRALVVDPVMVSTSG-DVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVT 171
E P+ A++ + G + P+ L LL + DI+ PN EA LL G++V
Sbjct: 142 EVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAE-LLSGIKVTN 200
Query: 172 VADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGC 231
M A ++G +TVL+ G F + + +VN +T G
Sbjct: 201 EQSMKDNANYFLSIGIKTVLITLGKQG------TYFATKNQSQHIEAYKVNAIDTTAAGD 254
Query: 232 TLASCIAAELAKGSPMLS 249
T + L K L+
Sbjct: 255 TFIGAFVSRLNKSQDNLA 272
>pdb|3H74|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum
pdb|3HYO|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Adp
pdb|3IBQ|A Chain A, Crystal Structure Of Pyridoxal Kinase From Lactobacillus
Plantarum In Complex With Atp
Length = 282
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 9/181 (4%)
Query: 86 SDMQVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAG--PSTITGLR 143
+ + D G + S L + + L + + LVVDPV+ G + G + R
Sbjct: 71 AQLHFDQALIGYVGSVALCQQITTYLEQQTLSLLVVDPVL-GDLGQLYQGFDQDYVAAXR 129
Query: 144 ENLLPMADIVTPNVKEASALLGGMQVVT--VADMCSAAKLLHNLGPRTVLVKGGDLPDSS 201
+ L+ AD++ PN EA+ L G VT + + A + G V+ D+ +
Sbjct: 130 Q-LIQQADVILPNTTEAALLTGAPYQVTPDLEVILPALQAQLKTGAHAVIT---DVQRAD 185
Query: 202 DAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETA 261
+ D + +R + +GTG TLA+ IA L +G P+ + A ++ A
Sbjct: 186 QIGCAWLDEAGHVQYCGARRLPGHYNGTGDTLAAVIAGLLGRGYPLAPTLARANQWLNXA 245
Query: 262 L 262
+
Sbjct: 246 V 246
>pdb|1TD2|A Chain A, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
pdb|1TD2|B Chain B, Crystal Structure Of The Pdxy Protein From Escherichia
Coli
Length = 287
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 91 DVVKTGMLPSTD----LVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENL 146
D V +G L S + ++ ++ Q + P DPVM + P +
Sbjct: 77 DAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHG 136
Query: 147 LPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVK 193
LP +DI+ PN+ E +L V V + AA+ L GP+ VLVK
Sbjct: 137 LPASDIIAPNLVELE-ILCEHAVNNVEEAVLAARELIAQGPQIVLVK 182
>pdb|3PZS|A Chain A, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
pdb|3PZS|B Chain B, Crystal Structure Of A Pyridoxamine Kinase From Yersinia
Pestis Co92
Length = 289
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 91 DVVKTGMLPSTDLVKVLLQSLSEF----PVRALVVDPVMVSTSGDVLAGPSTITGLRENL 146
D V +G + S + +L ++++ P DPV + P
Sbjct: 79 DAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVXGHPEKGCIVAPGVAEFFCNEA 138
Query: 147 LPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVK 193
LP +D + PN+ E L G +V V A+ L GP+ VLVK
Sbjct: 139 LPASDXIAPNLLELEQ-LSGERVENVEQAVQVARSLCARGPKVVLVK 184
>pdb|1VI9|A Chain A, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|B Chain B, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|C Chain C, Crystal Structure Of Pyridoxamine Kinase
pdb|1VI9|D Chain D, Crystal Structure Of Pyridoxamine Kinase
Length = 299
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 91 DVVKTGMLPSTD----LVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENL 146
D V +G L S + ++ ++ Q + P DPV + P +
Sbjct: 79 DAVLSGYLGSAEQGEHILGIVRQVKAANPQAKYFCDPVXGHPEKGCIVAPGVAEFHVRHG 138
Query: 147 LPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVK 193
LP +DI+ PN+ E +L V V + AA+ L GP+ VLVK
Sbjct: 139 LPASDIIAPNLVELE-ILCEHAVNNVEEAVLAARELIAQGPQIVLVK 184
>pdb|1VZW|A Chain A, Crystal Structure Of The Bifunctional Protein Pria
pdb|2VEP|A Chain A, Crystal Structure Of The Full Length Bifunctional Enzyme
Pria
Length = 244
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 27/215 (12%)
Query: 309 DSGMNKKWGRSITDAVKAALEGGATIIQLREKDA-----DTRGFLEAAKACLQICCVHGV 363
+SG +G S +A A GA + L + DA D R + + I
Sbjct: 24 ESGTETSYG-SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSG 82
Query: 364 PLLINDRIDIALACDADGVHLGQS--DMPARTARALLGP-DKI-IGVSCKTPEEAHQAW- 418
+ +D + ALA V+LG + + P A+ + DKI +G+ + + W
Sbjct: 83 GIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWT 142
Query: 419 ---------IDGANYIGCGGVYPTNTKANNLTVG--LDGLKTVCLASKLPVVAIGGIGIS 467
+D N GC T+ + G L+ LK VC A+ PVVA G G+S
Sbjct: 143 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASG--GVS 200
Query: 468 NASDVMKIG---VSNLKGVAVVSALFDRECILPES 499
+ D+ I + ++G V AL+ + L E+
Sbjct: 201 SLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA 235
>pdb|2X30|A Chain A, Crystal Structure Of The R139n Mutant Of A Bifunctional
Enzyme Pria
Length = 240
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 27/215 (12%)
Query: 309 DSGMNKKWGRSITDAVKAALEGGATIIQLREKDA-----DTRGFLEAAKACLQICCVHGV 363
+SG +G + +A A GA + L + DA D R + + I
Sbjct: 24 ESGTETSYGSPL-EAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSG 82
Query: 364 PLLINDRIDIALACDADGVHLGQS--DMPARTARALLGP-DKI-IGVSCKTPEEAHQAW- 418
+ +D + ALA V+LG + + P A+ + DKI +G+ + W
Sbjct: 83 GIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGNGWT 142
Query: 419 ---------IDGANYIGCGGVYPTNTKANNLTVG--LDGLKTVCLASKLPVVAIGGIGIS 467
+D N GC T+ + G L+ LK VC A+ PVVA G G+S
Sbjct: 143 RDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASG--GVS 200
Query: 468 NASDVMKIG---VSNLKGVAVVSALFDRECILPES 499
+ D+ I + ++G V AL+ + L E+
Sbjct: 201 SLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEA 235
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%)
Query: 429 GVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSA 488
GV+PT T LD L +C + VVAIG IG+ + L G +S
Sbjct: 102 GVHPTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSI 161
Query: 489 LFDRECILP 497
L + LP
Sbjct: 162 LHQKYPYLP 170
>pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|B Chain B, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|C Chain C, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|D Chain D, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
Length = 368
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALAC 377
R+ DA+K G I+ + K G+LEA + +C HG+P+ D I+ L
Sbjct: 246 RAAADAIKL---GAVQIVNI--KPGRVGGYLEARRVH-DVCAAHGIPVWCGDMIETGLGR 299
Query: 378 DAD 380
A+
Sbjct: 300 AAN 302
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 305 YAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAK 352
YAV S + G + T + +++ G TI ++ E D GF AA
Sbjct: 313 YAVATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGFRNAAN 360
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 305 YAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAK 352
YAV S + G + T + +++ G TI ++ E D GF AA
Sbjct: 313 YAVATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGFRNAAN 360
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 305 YAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAK 352
YAV S + G + T + +++ G TI ++ E D GF AA
Sbjct: 313 YAVATSSVTVSAGSTTTKNISGSVKTGTTIFKIGEWDGQPTGFRNAAN 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,305,609
Number of Sequences: 62578
Number of extensions: 578675
Number of successful extensions: 1589
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 51
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)