Query 010241
Match_columns 514
No_of_seqs 77 out of 79
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jt1_A PEFI protein; solution 92.8 0.15 5E-06 41.7 5.2 49 82-132 4-57 (77)
2 3f2g_A Alkylmercury lyase; MER 92.7 0.092 3.1E-06 51.0 4.4 56 81-143 21-76 (220)
3 3i71_A Ethanolamine utilizatio 92.2 0.17 5.8E-06 40.6 4.7 44 85-130 6-49 (68)
4 2heo_A Z-DNA binding protein 1 91.8 0.22 7.5E-06 38.9 4.9 51 83-135 11-61 (67)
5 2lnb_A Z-DNA-binding protein 1 90.1 0.35 1.2E-05 40.5 4.8 43 82-124 19-61 (80)
6 1q1h_A TFE, transcription fact 87.9 1.1 3.9E-05 36.8 6.5 82 82-167 18-104 (110)
7 1xmk_A Double-stranded RNA-spe 87.4 0.93 3.2E-05 37.3 5.6 59 81-142 10-69 (79)
8 2htj_A P fimbrial regulatory p 82.2 1.5 5.2E-05 34.6 4.4 45 84-131 2-46 (81)
9 3cuq_B Vacuolar protein-sortin 82.0 2.8 9.5E-05 40.2 7.0 69 74-145 145-214 (218)
10 3r0a_A Putative transcriptiona 81.1 8.1 0.00028 32.9 9.0 84 82-169 26-115 (123)
11 1qbj_A Protein (double-strande 81.0 1.8 6.3E-05 35.4 4.7 50 81-132 9-60 (81)
12 3cuq_A Vacuolar-sorting protei 79.8 2 6.9E-05 42.0 5.2 69 73-145 144-216 (234)
13 1qgp_A Protein (double strande 77.8 2.8 9.5E-05 33.7 4.7 49 81-131 13-63 (77)
14 2fu4_A Ferric uptake regulatio 76.4 4 0.00014 31.9 5.2 58 81-140 16-81 (83)
15 3cuo_A Uncharacterized HTH-typ 75.0 4.5 0.00015 31.8 5.2 59 80-141 22-81 (99)
16 1y0u_A Arsenical resistance op 75.0 4 0.00014 32.8 5.0 54 80-141 29-82 (96)
17 1oyi_A Double-stranded RNA-bin 74.9 2.7 9.1E-05 35.1 3.9 48 81-132 16-63 (82)
18 2oqg_A Possible transcriptiona 74.7 20 0.00068 28.9 9.2 56 79-138 18-73 (114)
19 1u5t_A Appears to BE functiona 73.3 2.9 9.9E-05 40.9 4.4 60 84-146 169-230 (233)
20 2k02_A Ferrous iron transport 73.1 4.3 0.00015 33.9 4.8 42 82-124 2-43 (87)
21 1xn7_A Hypothetical protein YH 72.7 4.3 0.00015 33.0 4.6 42 82-124 2-43 (78)
22 1r1u_A CZRA, repressor protein 71.9 12 0.00042 30.5 7.3 59 79-141 23-81 (106)
23 3f6o_A Probable transcriptiona 70.6 17 0.00057 30.4 7.9 59 79-141 15-74 (118)
24 3jth_A Transcription activator 69.9 4.8 0.00017 32.2 4.3 58 80-141 21-79 (98)
25 2kko_A Possible transcriptiona 68.1 8 0.00027 32.0 5.4 56 81-140 24-79 (108)
26 2l0k_A Stage III sporulation p 67.1 3.5 0.00012 34.7 3.0 37 80-118 5-41 (93)
27 3b73_A PHIH1 repressor-like pr 65.1 11 0.00036 32.6 5.7 56 83-143 14-71 (111)
28 3vp5_A Transcriptional regulat 64.1 3.8 0.00013 35.7 2.7 37 77-113 7-48 (189)
29 2xvc_A ESCRT-III, SSO0910; cel 59.7 14 0.00047 29.4 4.9 50 80-131 8-57 (59)
30 2jsc_A Transcriptional regulat 59.5 18 0.0006 30.4 6.0 57 81-141 20-76 (118)
31 1ub9_A Hypothetical protein PH 59.4 36 0.0012 26.5 7.5 57 81-140 15-74 (100)
32 2x4h_A Hypothetical protein SS 58.9 53 0.0018 27.3 8.9 47 85-133 16-65 (139)
33 1r1t_A Transcriptional repress 57.7 24 0.00083 30.0 6.6 58 81-142 45-102 (122)
34 4hku_A LMO2814 protein, TETR t 56.4 4.8 0.00016 34.7 2.0 31 81-111 6-41 (178)
35 3h5t_A Transcriptional regulat 56.4 16 0.00054 35.2 5.9 69 92-160 4-94 (366)
36 2qwt_A Transcriptional regulat 55.8 6 0.00021 34.4 2.6 32 83-114 14-49 (196)
37 3bqz_B HTH-type transcriptiona 55.5 6.7 0.00023 33.2 2.7 34 81-114 1-39 (194)
38 2lkp_A Transcriptional regulat 54.4 32 0.0011 28.2 6.7 58 82-143 32-89 (119)
39 3kkc_A TETR family transcripti 54.3 7.6 0.00026 32.6 2.9 31 82-112 12-47 (177)
40 2xvc_A ESCRT-III, SSO0910; cel 53.9 5.1 0.00017 31.8 1.6 26 274-299 13-38 (59)
41 3ppb_A Putative TETR family tr 53.7 7.3 0.00025 32.8 2.7 34 81-114 8-46 (195)
42 1sfu_A 34L protein; protein/Z- 53.6 17 0.0006 29.9 4.8 52 81-134 11-64 (75)
43 2v9v_A Selenocysteine-specific 53.6 59 0.002 27.3 8.4 62 83-146 3-64 (135)
44 3vpr_A Transcriptional regulat 53.1 6.7 0.00023 33.6 2.4 33 82-114 3-40 (190)
45 2q24_A Putative TETR family tr 52.5 7.2 0.00025 33.5 2.5 32 83-114 16-51 (194)
46 3f6v_A Possible transcriptiona 52.5 23 0.00077 31.5 5.8 59 79-141 55-113 (151)
47 3nrg_A TETR family transcripti 52.3 6.4 0.00022 34.0 2.1 34 78-111 9-47 (217)
48 3pqk_A Biofilm growth-associat 51.9 13 0.00043 30.0 3.7 58 80-141 21-79 (102)
49 1mkm_A ICLR transcriptional re 51.5 65 0.0022 30.2 9.1 52 86-141 12-63 (249)
50 2d1h_A ST1889, 109AA long hypo 51.4 21 0.00072 28.0 4.9 48 84-133 23-70 (109)
51 2cyy_A Putative HTH-type trans 50.9 16 0.00056 31.5 4.6 41 83-124 8-48 (151)
52 2p5k_A Arginine repressor; DNA 50.9 35 0.0012 24.9 5.8 53 83-140 5-63 (64)
53 2zkz_A Transcriptional repress 50.1 21 0.00072 29.0 4.8 58 80-141 25-82 (99)
54 3nnr_A Transcriptional regulat 49.4 7.4 0.00025 34.4 2.1 34 80-113 3-41 (228)
55 2o0y_A Transcriptional regulat 49.3 14 0.00047 35.3 4.1 53 85-141 23-78 (260)
56 2dbb_A Putative HTH-type trans 48.9 20 0.00069 30.8 4.8 45 83-130 10-54 (151)
57 3jsj_A Putative TETR-family tr 48.1 8.8 0.0003 32.7 2.3 34 81-114 8-45 (190)
58 1u2w_A CADC repressor, cadmium 48.1 60 0.0021 27.2 7.5 52 82-136 42-93 (122)
59 2zcm_A Biofilm operon icaabcd 47.7 8.2 0.00028 33.0 2.1 29 85-113 14-43 (192)
60 2w25_A Probable transcriptiona 47.3 21 0.0007 30.8 4.6 44 83-129 8-51 (150)
61 2pn6_A ST1022, 150AA long hypo 47.0 16 0.00054 31.4 3.8 41 83-124 4-44 (150)
62 1sfx_A Conserved hypothetical 46.5 25 0.00086 27.4 4.6 57 82-141 20-78 (109)
63 2e1c_A Putative HTH-type trans 46.3 21 0.0007 32.2 4.6 41 83-124 28-68 (171)
64 2rek_A Putative TETR-family tr 45.5 8 0.00027 33.3 1.7 32 83-114 17-52 (199)
65 3mq0_A Transcriptional repress 45.4 14 0.00048 35.7 3.5 52 86-141 34-85 (275)
66 2o03_A Probable zinc uptake re 45.3 50 0.0017 28.2 6.7 59 81-141 10-75 (131)
67 2cg4_A Regulatory protein ASNC 45.3 22 0.00075 30.7 4.4 41 83-124 9-49 (152)
68 1p6r_A Penicillinase repressor 44.7 38 0.0013 26.2 5.3 54 82-138 9-66 (82)
69 2k9l_A RNA polymerase sigma fa 44.6 12 0.0004 30.0 2.4 38 85-122 35-73 (76)
70 3qkx_A Uncharacterized HTH-typ 44.4 12 0.00041 31.4 2.5 32 82-113 8-44 (188)
71 2gmg_A Hypothetical protein PF 44.2 16 0.00056 31.9 3.3 43 81-125 10-56 (105)
72 1i1g_A Transcriptional regulat 44.1 24 0.00082 29.7 4.4 41 83-124 5-45 (141)
73 3f1b_A TETR-like transcription 44.1 12 0.00039 31.9 2.4 32 83-114 15-51 (203)
74 3gzi_A Transcriptional regulat 43.4 11 0.00039 32.5 2.3 34 81-114 16-54 (218)
75 3dew_A Transcriptional regulat 43.4 10 0.00035 32.0 2.0 33 82-114 8-45 (206)
76 4a0z_A Transcription factor FA 42.8 21 0.00073 33.1 4.2 40 83-123 13-52 (190)
77 2dk5_A DNA-directed RNA polyme 42.8 28 0.00097 28.8 4.5 46 83-130 21-67 (91)
78 2cfx_A HTH-type transcriptiona 42.8 28 0.00095 29.9 4.7 45 83-130 6-50 (144)
79 3lwj_A Putative TETR-family tr 42.5 12 0.00041 31.9 2.3 32 81-112 11-47 (202)
80 3k2z_A LEXA repressor; winged 42.4 23 0.00077 32.2 4.3 45 86-132 13-57 (196)
81 2xrn_A HTH-type transcriptiona 42.4 24 0.00083 33.1 4.6 53 86-141 10-62 (241)
82 1z91_A Organic hydroperoxide r 42.4 39 0.0013 28.0 5.4 47 83-132 41-87 (147)
83 3he0_A Transcriptional regulat 42.0 14 0.00048 31.3 2.6 33 81-113 10-47 (196)
84 1u5t_B Defective in vacuolar p 42.0 29 0.00098 32.0 4.9 57 77-135 93-158 (169)
85 1ku9_A Hypothetical protein MJ 41.9 1.4E+02 0.0048 24.3 10.7 60 83-144 27-89 (152)
86 3kz9_A SMCR; transcriptional r 41.9 14 0.00047 31.4 2.5 33 82-114 17-54 (206)
87 3lhq_A Acrab operon repressor 41.8 14 0.00048 31.5 2.6 32 83-114 15-51 (220)
88 2gxg_A 146AA long hypothetical 41.7 35 0.0012 28.2 5.0 46 83-132 38-83 (146)
89 2fd5_A Transcriptional regulat 41.4 13 0.00044 31.4 2.3 29 83-111 8-41 (180)
90 3nxc_A HTH-type protein SLMA; 41.1 9.8 0.00034 32.7 1.5 34 81-114 23-62 (212)
91 2id6_A Transcriptional regulat 41.1 8.1 0.00028 33.6 1.0 34 79-112 2-40 (202)
92 2ia0_A Putative HTH-type trans 41.0 32 0.0011 30.9 4.9 42 82-124 17-58 (171)
93 3eco_A MEPR; mutlidrug efflux 40.9 49 0.0017 27.1 5.8 48 83-132 32-80 (139)
94 2p5v_A Transcriptional regulat 40.5 30 0.001 30.2 4.6 41 83-124 11-51 (162)
95 3col_A Putative transcription 40.5 12 0.00041 31.4 2.0 32 82-113 10-46 (196)
96 3dpj_A Transcription regulator 40.2 14 0.00047 31.4 2.3 33 82-114 8-45 (194)
97 2iai_A Putative transcriptiona 39.5 12 0.0004 33.4 1.8 31 83-113 35-66 (230)
98 1t33_A Putative transcriptiona 39.4 11 0.00037 32.9 1.5 31 83-113 13-47 (224)
99 3f0c_A TETR-molecule A, transc 39.3 14 0.00049 31.8 2.3 33 81-113 10-47 (216)
100 3mvp_A TETR/ACRR transcription 39.1 13 0.00044 31.9 2.0 34 81-114 25-63 (217)
101 3bro_A Transcriptional regulat 39.1 34 0.0012 28.0 4.5 48 83-132 35-83 (141)
102 3rd3_A Probable transcriptiona 38.4 15 0.00052 30.9 2.3 34 81-114 9-47 (197)
103 3bdd_A Regulatory protein MARR 38.3 76 0.0026 25.8 6.6 48 83-133 32-79 (142)
104 3nrv_A Putative transcriptiona 38.3 41 0.0014 27.9 5.0 46 84-132 42-87 (148)
105 2y75_A HTH-type transcriptiona 38.2 36 0.0012 28.6 4.6 44 87-132 14-59 (129)
106 2pij_A Prophage PFL 6 CRO; tra 38.0 50 0.0017 24.2 4.9 51 85-141 4-54 (67)
107 3fm5_A Transcriptional regulat 38.0 36 0.0012 28.6 4.5 48 83-132 40-87 (150)
108 3i4p_A Transcriptional regulat 37.9 27 0.00093 30.8 3.9 42 83-125 4-45 (162)
109 1sgm_A Putative HTH-type trans 37.9 16 0.00055 30.6 2.3 30 82-111 6-40 (191)
110 2iu5_A DHAS, YCEG, HTH-type dh 37.7 14 0.00049 31.8 2.0 29 82-110 13-46 (195)
111 1on2_A Transcriptional regulat 37.6 1.4E+02 0.0046 25.0 8.1 46 95-143 20-65 (142)
112 2qtq_A Transcriptional regulat 37.4 16 0.00055 31.2 2.3 34 80-113 14-52 (213)
113 2rae_A Transcriptional regulat 37.2 16 0.00056 31.3 2.3 33 81-113 16-53 (207)
114 3knw_A Putative transcriptiona 37.1 16 0.00056 31.2 2.3 34 81-114 13-51 (212)
115 3egq_A TETR family transcripti 36.9 13 0.00043 31.2 1.5 32 82-113 4-40 (170)
116 2yve_A Transcriptional regulat 36.9 19 0.00066 30.9 2.7 31 83-113 5-40 (185)
117 3him_A Probable transcriptiona 36.8 17 0.00057 31.0 2.3 32 80-111 14-50 (211)
118 2kif_A O6-methylguanine-DNA me 36.7 33 0.0011 29.7 4.1 57 82-138 3-65 (108)
119 2dg7_A Putative transcriptiona 36.6 17 0.0006 31.0 2.4 33 81-113 6-43 (195)
120 2fe3_A Peroxide operon regulat 36.5 65 0.0022 28.0 6.1 60 80-141 20-86 (145)
121 3f3x_A Transcriptional regulat 36.2 1.2E+02 0.0042 24.9 7.6 46 84-133 39-84 (144)
122 3s5r_A Transcriptional regulat 36.2 18 0.00063 31.0 2.5 33 82-114 10-47 (216)
123 3on2_A Probable transcriptiona 36.1 14 0.00048 31.1 1.7 31 81-111 11-46 (199)
124 2pg4_A Uncharacterized protein 36.1 28 0.00097 27.6 3.4 44 86-131 19-63 (95)
125 3tgn_A ADC operon repressor AD 35.9 33 0.0011 28.4 4.0 46 83-132 39-84 (146)
126 3bru_A Regulatory protein, TET 35.8 19 0.00065 31.1 2.6 34 81-114 29-67 (222)
127 3on4_A Transcriptional regulat 35.8 16 0.00055 30.6 2.0 33 81-113 9-46 (191)
128 3rh2_A Hypothetical TETR-like 35.7 16 0.00054 31.7 2.0 33 81-113 2-39 (212)
129 3qqa_A CMER; alpha-helical, he 35.7 18 0.00061 31.1 2.3 29 82-110 19-52 (216)
130 3o60_A LIN0861 protein; PSI, M 35.6 14 0.00046 32.7 1.6 32 81-112 18-55 (185)
131 2rdp_A Putative transcriptiona 35.6 53 0.0018 27.2 5.2 47 83-132 43-89 (150)
132 2dk8_A DNA-directed RNA polyme 35.5 90 0.0031 25.9 6.4 60 80-141 12-73 (81)
133 3mkl_A HTH-type transcriptiona 35.5 39 0.0013 28.0 4.3 42 77-118 2-44 (120)
134 2fq4_A Transcriptional regulat 35.5 18 0.00062 31.1 2.3 34 81-114 11-49 (192)
135 2d6y_A Putative TETR family re 35.4 18 0.00061 31.6 2.3 32 82-113 8-44 (202)
136 3q0w_A HTH-type transcriptiona 35.4 17 0.00059 32.4 2.3 34 81-114 43-81 (236)
137 1rkt_A Protein YFIR; transcrip 35.3 18 0.0006 31.4 2.2 32 82-113 12-48 (205)
138 2zb9_A Putative transcriptiona 35.3 17 0.0006 31.5 2.2 31 83-113 24-59 (214)
139 2eh3_A Transcriptional regulat 35.3 18 0.00063 30.6 2.3 32 82-113 2-38 (179)
140 3cdl_A Transcriptional regulat 35.0 19 0.00065 31.2 2.4 35 79-113 6-45 (203)
141 3dcf_A Transcriptional regulat 34.9 25 0.00084 30.2 3.1 34 81-114 30-68 (218)
142 2nnn_A Probable transcriptiona 34.8 40 0.0014 27.5 4.3 47 83-132 39-85 (140)
143 3bj6_A Transcriptional regulat 34.6 45 0.0015 27.7 4.6 47 83-132 41-87 (152)
144 2dg8_A Putative TETR-family tr 34.6 17 0.00057 31.3 2.0 32 82-113 9-45 (193)
145 3to7_A Histone acetyltransfera 34.6 28 0.00095 35.0 3.7 39 84-122 195-233 (276)
146 1vi0_A Transcriptional regulat 34.5 17 0.00057 31.9 2.0 32 82-113 8-44 (206)
147 3anp_C Transcriptional repress 34.5 19 0.00064 31.1 2.3 31 83-113 10-45 (204)
148 1jhf_A LEXA repressor; LEXA SO 34.5 51 0.0018 29.6 5.3 48 83-132 11-59 (202)
149 1j5y_A Transcriptional regulat 34.5 36 0.0012 30.7 4.3 48 84-132 23-70 (187)
150 1pb6_A Hypothetical transcript 34.4 20 0.00068 30.7 2.4 33 81-113 17-54 (212)
151 3e7q_A Transcriptional regulat 34.4 10 0.00036 32.4 0.6 33 81-113 13-50 (215)
152 3cwr_A Transcriptional regulat 34.4 17 0.0006 30.8 2.0 33 81-113 16-53 (208)
153 3r4k_A Transcriptional regulat 34.2 14 0.00047 35.3 1.5 51 87-141 11-62 (260)
154 3mwm_A ZUR, putative metal upt 34.2 88 0.003 27.1 6.6 61 81-141 13-78 (139)
155 3b81_A Transcriptional regulat 34.2 22 0.00076 30.2 2.6 33 81-113 10-47 (203)
156 2hr3_A Probable transcriptiona 34.1 47 0.0016 27.5 4.6 47 84-132 37-83 (147)
157 3deu_A Transcriptional regulat 34.1 45 0.0015 29.0 4.7 49 83-133 54-102 (166)
158 1lj9_A Transcriptional regulat 34.0 70 0.0024 26.3 5.7 46 84-132 31-76 (144)
159 1tc3_C Protein (TC3 transposas 34.0 52 0.0018 21.8 4.1 39 78-119 5-43 (51)
160 3frq_A Repressor protein MPHR( 33.9 11 0.00037 32.3 0.6 30 84-113 10-44 (195)
161 1s3j_A YUSO protein; structura 33.8 59 0.002 27.1 5.3 47 84-133 39-85 (155)
162 3f2g_A Alkylmercury lyase; MER 33.7 21 0.00072 34.6 2.7 53 272-332 23-75 (220)
163 1zk8_A Transcriptional regulat 33.6 20 0.0007 30.1 2.3 32 82-113 8-44 (183)
164 2gen_A Probable transcriptiona 33.6 20 0.00069 31.0 2.4 31 83-113 8-43 (197)
165 3vib_A MTRR; helix-turn-helix 33.5 20 0.00068 31.1 2.3 33 81-113 9-46 (210)
166 2g7u_A Transcriptional regulat 33.5 50 0.0017 31.2 5.2 48 83-132 12-62 (257)
167 4a6d_A Hydroxyindole O-methylt 33.5 22 0.00076 35.1 2.9 63 79-143 25-88 (353)
168 4aci_A HTH-type transcriptiona 33.3 11 0.00038 31.9 0.6 34 81-114 13-51 (191)
169 1bja_A Transcription regulator 33.3 48 0.0016 28.2 4.5 43 85-130 19-62 (95)
170 3npi_A TETR family regulatory 33.1 12 0.0004 33.9 0.7 34 81-114 17-55 (251)
171 3hta_A EBRA repressor; TETR fa 32.8 18 0.00063 32.0 2.0 32 83-114 29-65 (217)
172 3bhq_A Transcriptional regulat 32.7 21 0.00072 31.1 2.3 33 81-113 11-48 (211)
173 3qbm_A TETR transcriptional re 32.6 22 0.00074 30.0 2.3 32 83-114 8-44 (199)
174 2ibd_A Possible transcriptiona 32.5 22 0.00075 30.8 2.4 32 82-113 14-50 (204)
175 2fbh_A Transcriptional regulat 32.4 49 0.0017 27.1 4.5 48 83-132 38-85 (146)
176 2h09_A Transcriptional regulat 32.3 2E+02 0.0068 24.3 8.5 53 87-143 45-97 (155)
177 3g7r_A Putative transcriptiona 32.2 21 0.00071 31.6 2.2 35 80-114 33-72 (221)
178 2guh_A Putative TETR-family tr 32.2 22 0.00075 31.7 2.4 33 82-114 39-76 (214)
179 2g7s_A Transcriptional regulat 32.0 22 0.00074 29.8 2.2 33 82-114 8-45 (194)
180 2qko_A Possible transcriptiona 31.5 24 0.0008 30.8 2.4 30 82-111 28-62 (215)
181 2xzm_8 RPS25E,; ribosome, tran 31.5 32 0.0011 31.5 3.3 60 79-140 45-106 (143)
182 3kjx_A Transcriptional regulat 31.2 15 0.00053 34.9 1.3 27 93-119 6-32 (344)
183 2g7g_A RHA04620, putative tran 31.2 21 0.00073 32.1 2.1 31 82-113 11-45 (213)
184 1b4a_A Arginine repressor; hel 30.8 23 0.00078 32.1 2.3 63 270-334 4-67 (149)
185 1ui5_A A-factor receptor homol 30.8 24 0.0008 31.2 2.3 32 82-113 9-45 (215)
186 2np5_A Transcriptional regulat 30.8 21 0.00073 31.0 2.0 32 82-113 9-45 (203)
187 2f07_A YVDT; helix-turn-helix, 30.7 24 0.0008 30.6 2.3 32 81-112 9-45 (197)
188 3bni_A Putative TETR-family tr 30.2 27 0.00094 31.0 2.7 33 82-114 43-80 (229)
189 2qib_A TETR-family transcripti 30.0 24 0.0008 31.5 2.2 32 82-113 13-49 (231)
190 2ia2_A Putative transcriptiona 30.0 58 0.002 31.0 5.1 78 83-165 19-103 (265)
191 2hsg_A Glucose-resistance amyl 29.8 22 0.00075 33.6 2.0 24 97-120 2-25 (332)
192 3ljl_A Transcriptional regulat 29.8 15 0.00052 31.0 0.8 33 82-114 14-51 (156)
193 2vxz_A Pyrsv_GP04; viral prote 29.8 2E+02 0.0068 26.9 8.3 76 82-168 11-86 (165)
194 3dp7_A SAM-dependent methyltra 29.8 41 0.0014 33.0 4.1 57 82-143 35-91 (363)
195 1ufm_A COP9 complex subunit 4; 29.7 2.2E+02 0.0076 23.1 7.9 63 76-138 9-72 (84)
196 2fbi_A Probable transcriptiona 29.6 62 0.0021 26.4 4.6 47 83-132 37-83 (142)
197 2a61_A Transcriptional regulat 29.6 67 0.0023 26.3 4.8 47 83-132 34-80 (145)
198 2xdn_A HTH-type transcriptiona 29.4 24 0.00083 30.6 2.1 30 82-111 11-45 (210)
199 1neq_A DNA-binding protein NER 29.4 36 0.0012 26.8 3.0 33 80-115 8-40 (74)
200 3txn_A 26S proteasome regulato 29.3 1.1E+02 0.0038 31.5 7.4 66 82-147 301-366 (394)
201 2eth_A Transcriptional regulat 29.2 2.5E+02 0.0085 23.4 9.0 47 83-132 45-91 (154)
202 3geu_A Intercellular adhesion 29.1 15 0.00053 31.1 0.8 33 82-114 3-40 (189)
203 2ek5_A Predicted transcription 29.0 2.7E+02 0.0093 23.8 8.8 49 95-146 25-74 (129)
204 2id3_A Putative transcriptiona 28.9 24 0.00081 31.3 2.0 32 82-113 40-76 (225)
205 3g1o_A Transcriptional regulat 28.8 20 0.0007 32.4 1.6 33 81-113 42-79 (255)
206 3pas_A TETR family transcripti 28.7 15 0.0005 30.9 0.6 33 82-114 8-45 (195)
207 3g3z_A NMB1585, transcriptiona 28.7 56 0.0019 27.1 4.2 48 83-133 32-79 (145)
208 1bia_A BIRA bifunctional prote 28.6 77 0.0026 31.2 5.8 58 82-143 5-62 (321)
209 2l02_A Uncharacterized protein 28.6 1.1E+02 0.0038 25.6 5.8 55 86-143 12-66 (82)
210 3ccy_A Putative TETR-family tr 28.6 29 0.00098 29.9 2.4 30 82-111 14-48 (203)
211 2ras_A Transcriptional regulat 28.4 27 0.00092 30.1 2.2 32 82-113 11-47 (212)
212 2bv6_A MGRA, HTH-type transcri 28.4 66 0.0023 26.4 4.6 48 83-133 38-85 (142)
213 3mnl_A KSTR, transcriptional r 28.3 15 0.00052 31.2 0.6 32 82-113 20-56 (203)
214 3fiw_A Putative TETR-family tr 28.2 22 0.00076 32.0 1.7 32 82-113 25-61 (211)
215 1w7p_D VPS36P, YLR417W; ESCRT- 28.1 45 0.0015 36.5 4.3 62 81-145 493-561 (566)
216 2nx4_A Transcriptional regulat 28.1 28 0.00097 30.0 2.3 31 83-113 11-46 (194)
217 2fa5_A Transcriptional regulat 27.9 75 0.0026 26.7 4.9 48 83-133 50-97 (162)
218 2wui_A MEXZ, transcriptional r 27.9 30 0.001 30.1 2.5 33 81-113 10-47 (210)
219 3neu_A LIN1836 protein; struct 27.9 1.6E+02 0.0053 24.9 7.0 57 83-142 18-79 (125)
220 2l01_A Uncharacterized protein 27.8 1E+02 0.0034 25.6 5.4 54 86-142 14-68 (77)
221 3bjb_A Probable transcriptiona 27.8 28 0.00095 30.5 2.3 33 82-114 22-59 (207)
222 1z0x_A Transcriptional regulat 27.8 25 0.00084 31.7 1.9 32 82-113 5-42 (220)
223 2hyt_A TETR-family transcripti 27.6 28 0.00094 30.1 2.2 31 82-112 12-47 (197)
224 1jgs_A Multiple antibiotic res 27.5 88 0.003 25.5 5.2 47 83-132 35-81 (138)
225 1lva_A Selenocysteine-specific 27.5 1.9E+02 0.0066 27.5 8.2 55 84-139 4-58 (258)
226 3aqt_A Bacterial regulatory pr 27.5 27 0.00091 31.6 2.1 31 81-111 45-80 (245)
227 2k53_A A3DK08 protein; NESG, C 27.4 38 0.0013 27.2 2.8 40 85-124 17-65 (76)
228 3kkd_A Transcriptional regulat 27.2 25 0.00084 31.2 1.8 30 81-110 34-68 (237)
229 1uxc_A FRUR (1-57), fructose r 27.1 29 0.001 26.9 2.0 21 98-118 1-21 (65)
230 2nyx_A Probable transcriptiona 27.0 63 0.0021 27.9 4.4 46 83-131 46-91 (168)
231 2jj7_A Hemolysin II regulatory 26.6 17 0.00057 30.8 0.6 33 82-114 7-44 (186)
232 2b0l_A GTP-sensing transcripti 26.6 23 0.00079 29.6 1.4 47 84-133 30-77 (102)
233 1mzb_A Ferric uptake regulatio 26.6 1.1E+02 0.0038 26.2 5.8 60 80-141 16-83 (136)
234 2xig_A Ferric uptake regulatio 26.6 1.3E+02 0.0044 26.4 6.3 62 80-141 25-91 (150)
235 2fbq_A Probable transcriptiona 26.5 30 0.001 31.0 2.2 32 82-113 7-43 (235)
236 2w53_A Repressor, SMet; antibi 26.3 31 0.0011 30.1 2.3 32 82-113 11-47 (219)
237 2qww_A Transcriptional regulat 26.3 77 0.0026 26.4 4.7 46 83-131 42-87 (154)
238 2zcx_A SCO7815, TETR-family tr 26.3 30 0.001 31.2 2.2 33 81-113 22-59 (231)
239 3bja_A Transcriptional regulat 26.2 62 0.0021 26.2 4.0 47 83-132 34-80 (139)
240 2hyj_A Putative TETR-family tr 25.9 29 0.001 30.1 2.0 32 82-113 12-48 (200)
241 3bpv_A Transcriptional regulat 25.7 75 0.0026 25.8 4.4 47 83-132 30-76 (138)
242 3c7j_A Transcriptional regulat 25.6 1.3E+02 0.0043 28.1 6.5 42 93-136 45-87 (237)
243 3c2b_A Transcriptional regulat 25.5 30 0.001 29.9 2.0 33 81-113 14-51 (221)
244 2i10_A Putative TETR transcrip 25.4 34 0.0011 29.8 2.3 30 85-114 18-48 (202)
245 1uly_A Hypothetical protein PH 25.3 61 0.0021 29.8 4.2 51 82-136 20-73 (192)
246 3lsj_A DEST; transcriptional r 25.3 33 0.0011 29.7 2.3 30 82-111 11-46 (220)
247 2qc0_A Uncharacterized protein 25.0 90 0.0031 31.5 5.7 66 79-147 294-360 (373)
248 2np3_A Putative TETR-family re 24.9 18 0.0006 31.5 0.4 30 83-112 35-65 (212)
249 3boq_A Transcriptional regulat 24.8 53 0.0018 27.6 3.4 48 83-132 48-95 (160)
250 3loc_A HTH-type transcriptiona 24.5 19 0.00066 30.7 0.6 33 82-114 18-55 (212)
251 1qpz_A PURA, protein (purine n 24.4 31 0.001 32.8 2.0 22 98-119 1-22 (340)
252 3eup_A Transcriptional regulat 24.4 20 0.00068 30.4 0.6 32 82-113 11-47 (204)
253 2k5e_A Uncharacterized protein 24.2 65 0.0022 25.6 3.6 43 85-127 19-70 (73)
254 1t6s_A Conserved hypothetical 24.1 1E+02 0.0034 28.3 5.3 47 94-141 19-70 (162)
255 3v6g_A Probable transcriptiona 23.7 37 0.0013 30.1 2.3 32 82-113 14-50 (208)
256 3cjn_A Transcriptional regulat 23.5 91 0.0031 26.3 4.7 47 83-132 53-99 (162)
257 1jko_C HIN recombinase, DNA-in 23.4 69 0.0024 21.6 3.2 37 79-118 6-42 (52)
258 3i53_A O-methyltransferase; CO 23.4 49 0.0017 31.7 3.2 55 78-136 21-75 (332)
259 3h5o_A Transcriptional regulat 23.3 17 0.00059 34.5 0.0 24 96-119 3-26 (339)
260 2hku_A A putative transcriptio 23.1 39 0.0013 29.4 2.2 34 81-114 19-56 (215)
261 2pex_A Transcriptional regulat 23.1 96 0.0033 25.9 4.7 47 83-132 48-94 (153)
262 2z99_A Putative uncharacterize 23.1 1.1E+02 0.0039 29.4 5.7 58 79-136 11-72 (219)
263 3ech_A MEXR, multidrug resista 23.1 54 0.0019 27.1 3.1 47 83-132 38-84 (142)
264 1lva_A Selenocysteine-specific 23.0 70 0.0024 30.6 4.2 64 70-134 129-193 (258)
265 2of7_A Putative TETR-family tr 22.9 40 0.0014 30.7 2.4 34 81-114 47-85 (260)
266 2o20_A Catabolite control prot 22.8 18 0.00061 34.3 0.0 25 96-120 4-28 (332)
267 3by6_A Predicted transcription 22.8 2.1E+02 0.0072 24.3 6.8 45 95-142 32-77 (126)
268 3ni7_A Bacterial regulatory pr 22.7 57 0.0019 29.1 3.3 32 82-113 7-43 (213)
269 1r7j_A Conserved hypothetical 22.4 3.2E+02 0.011 22.2 7.9 45 86-135 12-56 (95)
270 3lmm_A Uncharacterized protein 22.3 18 0.00063 39.0 0.0 51 82-135 516-566 (583)
271 2pq8_A Probable histone acetyl 22.2 36 0.0012 34.2 2.0 37 85-121 196-232 (278)
272 3e6m_A MARR family transcripti 22.0 91 0.0031 26.5 4.4 48 83-133 54-101 (161)
273 3tqn_A Transcriptional regulat 21.9 49 0.0017 27.6 2.6 58 83-143 14-76 (113)
274 2g3b_A Putative TETR-family tr 21.9 23 0.0008 31.1 0.6 32 82-113 3-39 (208)
275 3oop_A LIN2960 protein; protei 21.8 96 0.0033 25.6 4.4 48 83-133 38-85 (143)
276 3bil_A Probable LACI-family tr 21.8 19 0.00066 34.6 0.0 26 95-120 6-31 (348)
277 2oer_A Probable transcriptiona 21.7 27 0.00093 30.6 1.0 32 82-113 24-60 (214)
278 2oi8_A Putative regulatory pro 21.6 46 0.0016 29.7 2.5 35 80-114 14-53 (216)
279 4ham_A LMO2241 protein; struct 21.5 50 0.0017 28.3 2.6 36 94-131 34-70 (134)
280 2l8n_A Transcriptional repress 21.4 30 0.001 27.0 1.1 22 97-118 9-30 (67)
281 2gqq_A Leucine-responsive regu 21.3 22 0.00077 31.2 0.3 46 82-130 13-58 (163)
282 2pi2_A Replication protein A 3 21.2 20 0.00069 34.8 0.0 46 82-129 207-255 (270)
283 2w57_A Ferric uptake regulatio 21.2 1.5E+02 0.005 26.0 5.6 60 80-141 15-82 (150)
284 3e3m_A Transcriptional regulat 21.2 20 0.00069 34.4 0.0 27 93-119 8-34 (355)
285 2jt1_A PEFI protein; solution 20.8 19 0.00066 29.1 -0.2 29 271-299 4-37 (77)
286 2pz9_A Putative regulatory pro 20.6 27 0.00093 30.9 0.7 33 81-113 29-66 (226)
287 3df8_A Possible HXLR family tr 20.6 3.5E+02 0.012 22.1 8.2 72 84-163 29-101 (111)
288 1fp2_A Isoflavone O-methyltran 20.5 1.5E+02 0.0051 28.7 6.1 66 76-143 30-98 (352)
289 1wi9_A Protein C20ORF116 homol 20.2 1.2E+02 0.004 24.9 4.3 59 85-144 10-68 (72)
No 1
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.76 E-value=0.15 Score=41.75 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHhc-----CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 82 ~~~~~im~ave~~-----g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
+....|++.+++. ||.+|+.|+|...|+|...+++.|.+|... |.|+-+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k--G~I~R~ 57 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV--GVLEKV 57 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEec
Confidence 4567899999998 999999999999999999999999999875 455544
No 2
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=92.65 E-value=0.092 Score=51.02 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
..+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|..|. .++.+++|+|+. ||-
T Consensus 21 ~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp~ 76 (220)
T 3f2g_A 21 ADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YGL 76 (220)
T ss_dssp HHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SSE
T ss_pred hHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ecC
Confidence 345567788887 99999999999999999999999999885 699999999977 765
No 3
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=92.24 E-value=0.17 Score=40.56 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 010241 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (514)
Q Consensus 85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq 130 (514)
+.++.-+....++.|+|+||+.-|.++++|+.+|..|-+| |.|.
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~--G~LR 49 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA--GTLR 49 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc--chhh
Confidence 5677788899999999999999999999999999999886 4454
No 4
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.76 E-value=0.22 Score=38.92 Aligned_cols=51 Identities=10% Similarity=0.125 Sum_probs=43.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G 135 (514)
.+++|++.+++.+..+|+.|+|...|++...+.+.|..|-++ |.++.+..|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~--G~I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE--DRVSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEEEETT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEecCCCc
Confidence 578999999998888999999999999999999999998765 446655555
No 5
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=90.12 E-value=0.35 Score=40.48 Aligned_cols=43 Identities=9% Similarity=0.229 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
+..++|+++++..|.-+..||||..+|++..++.++|.+|-.+
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkE 61 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKE 61 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999999999999765
No 6
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=87.90 E-value=1.1 Score=36.83 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-----cCCcEEEEcCcchHHHHhhhhHHH
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYVFPNNYRAKLAAKSFRL 156 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs-----e~GeIlY~FP~~fRs~l~~Ks~r~ 156 (514)
+.+-+|+..+-+.|.++|+.|+|...|++...+.++|..|.++ |-++.. ..|-.+|.+.-+-... ..-+..
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~--GlV~~~~~~~~~~g~~v~~~~~~~~~i--~~~~~~ 93 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ--GFVSYRKTRDKDSGWFIYYWKPNIDQI--NEILLN 93 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH--TSCEEEEEC---CCCCEEEEECTHHHH--C-----
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccCCCceEEEEeecCHHHH--HHHHHH
Confidence 4667899988778878999999999999999999999999876 566655 5677777332222221 223444
Q ss_pred hHHHHHHHHhh
Q 010241 157 KVEPVIDKAKA 167 (514)
Q Consensus 157 rl~~~~~k~w~ 167 (514)
+++.+.+++..
T Consensus 94 ~~~~~~e~l~~ 104 (110)
T 1q1h_A 94 RKRLILDKLKT 104 (110)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 7
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=87.44 E-value=0.93 Score=37.34 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=49.2
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~-~ae~~L~aLAsd~~G~LqVse~GeIlY~FP 142 (514)
++.+++|++.+++.| .+|+.|+|..-|++.. .+++.|..|..+ |-++-...|-.+|.-.
T Consensus 10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~LT 69 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHLT 69 (79)
T ss_dssp HHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEEC
T ss_pred hhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEeC
Confidence 357899999999998 5899999999999999 999999999875 5666556676666544
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.16 E-value=1.5 Score=34.55 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=39.0
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV 131 (514)
+.+|++.+.+.| .+|+.|+|...|++...+.+.|..|.++ |-++.
T Consensus 2 r~~Il~~L~~~~-~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRHN-GGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR 46 (81)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 578999998764 6999999999999999999999999875 66764
No 9
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=82.03 E-value=2.8 Score=40.23 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=54.1
Q ss_pred cccCCCC-chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 010241 74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (514)
Q Consensus 74 ~~~~~l~-~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~f 145 (514)
|++..-. .....+|++.++.. +.||+.++|..-|.+..-|+..|..+-. .|.|=++++++-+|-||.-|
T Consensus 145 vqs~~~~~~~~~~~il~~~~~~-g~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f 214 (218)
T 3cuq_B 145 IELQSHKEEEMVASALETVSEK-GSLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF 214 (218)
T ss_dssp EEETTCCGGGGHHHHHHHHHHT-SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred EEcCCCchHHHHHHHHHHHHHC-CCcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 5554333 25678888888865 4699999999999999999999988554 68888888777788799655
No 10
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=81.13 E-value=8.1 Score=32.87 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=59.0
Q ss_pred hhhHHHHHHHHhcCCc-eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec----cCCcEEEEcC-cchHHHHhhhhHH
Q 010241 82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVFP-NNYRAKLAAKSFR 155 (514)
Q Consensus 82 ~~~~~im~ave~~g~r-vTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs----e~GeIlY~FP-~~fRs~l~~Ks~r 155 (514)
..+-+|+.++.+.+.. +|+.|+|...|++...+.+.|..|... |-++-. +.|-..|+|. ...... ..-.+
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~--GlV~r~~~~~d~~~~~~~y~~~~~~~~--~~~i~ 101 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK--EILQRSQQNLDGGGYVYIYKIYSKNQI--RNIIQ 101 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEEEECTTSCEEEEEEECCHHHH--HHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeeCCccCCCcceEEEecCCHHHH--HHHHH
Confidence 3467899999988877 999999999999999999999999854 566532 2344666662 222221 23455
Q ss_pred HhHHHHHHHHhhhh
Q 010241 156 LKVEPVIDKAKAAA 169 (514)
Q Consensus 156 ~rl~~~~~k~w~v~ 169 (514)
..++.|.+.+...+
T Consensus 102 ~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 102 KIVQSWADRLGQEL 115 (123)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777665543
No 11
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=81.03 E-value=1.8 Score=35.42 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 81 ~~~~~~im~ave~~g--~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+...+|++.+.+.+ .++|+.|+|.+.|++...+++.|..|..+ |.++..
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~--G~I~~~ 60 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEec
Confidence 456788999999887 58999999999999999999999999764 556543
No 12
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=79.78 E-value=2 Score=42.01 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=51.9
Q ss_pred ccccCC--CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEcCcch
Q 010241 73 IVESDK--LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNY 145 (514)
Q Consensus 73 ~~~~~~--l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse--~GeIlY~FP~~f 145 (514)
.|.|.. |.++. .+|++.++.. +.||+.+++...|.+..-|+..|..|.++ |.+=|++ +||-.|=||.-|
T Consensus 144 ~VqSvp~el~~D~-~~vLela~~~-g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~--GllwvD~q~~ge~~Yw~P~lf 216 (234)
T 3cuq_A 144 LIQSVPAELNMDH-TVVLQLAEKN-GYVTVSEIKASLKWETERARQVLEHLLKE--GLAWLDLQAPGEAHYWLPALF 216 (234)
T ss_dssp EEECSCCCCCHHH-HHHHHHHTTT-SEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSCEEESSSSSSCEEECTTSS
T ss_pred EEEeCCCccchHH-HHHHHHHHhc-CcCcHHHHHHHhCCCHHHHHHHHHHHHhC--CCEEEeCCCCCcceeecchhh
Confidence 344443 44443 4477777755 57999999999999999999999997665 6666665 579999999655
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=77.80 E-value=2.8 Score=33.69 Aligned_cols=49 Identities=27% Similarity=0.395 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010241 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (514)
Q Consensus 81 ~~~~~~im~ave~~g--~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV 131 (514)
.+...+|++++++.+ .++|+.|+|.+.|++...+++.|..|-.+ |.++-
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~--G~I~~ 63 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQK 63 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH--TSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe
Confidence 455688999999988 58999999999999999999999999764 44543
No 14
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.41 E-value=4 Score=31.87 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEe-c-cCCcEEEE
Q 010241 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEV-S-DEGDVLYV 140 (514)
Q Consensus 81 ~~~~~~im~ave~~g-~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~LqV-s-e~GeIlY~ 140 (514)
...|..|++.+.+.+ ..+|+.|++... +++...+-+.|..|... |-++. . ++|...|.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~--Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA--GIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--TSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC--CCeEEEeeCCCceEee
Confidence 456788999998876 789999999998 99999999999999875 44443 2 25556664
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=75.02 E-value=4.5 Score=31.84 Aligned_cols=59 Identities=14% Similarity=0.332 Sum_probs=46.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~Ge-IlY~F 141 (514)
....+-+|+.++.. ++..|+.|+|...|++...+.+.|..|. ..|-++...+|. ..|..
T Consensus 22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQRDAQRILYSI 81 (99)
T ss_dssp CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEECSSCEEEEE
T ss_pred CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEecCCEEEEEE
Confidence 34567889998855 6689999999999999999999999996 467777666554 44444
No 16
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=74.97 E-value=4 Score=32.83 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=43.3
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
....|.+|++.+ .+.+|++|+|...|++...+.+.|..|... |-++... | .|..
T Consensus 29 ~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~--Glv~~~~-g--~y~l 82 (96)
T 1y0u_A 29 TNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG--FCIERVG-E--RWVV 82 (96)
T ss_dssp SCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-T--EEEE
T ss_pred CCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEC-C--EEEE
Confidence 345677889998 345999999999999999999999999765 7777666 6 5554
No 17
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.91 E-value=2.7 Score=35.07 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=40.3
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
-.++.+|++.+.+.| +|+.|+|.+.|++...+++-|..|..+ |.++..
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~e--G~I~~~ 63 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRS--AMVYSS 63 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHH--TSSEEC
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeC
Confidence 357789999999766 999999999999999999999999765 444443
No 18
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=74.74 E-value=20 Score=28.94 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIl 138 (514)
|....|-+|+..+ .. +..|+.|+|...|++...+.+.|..|.. .|-++...+|.-.
T Consensus 18 l~~~~r~~IL~~L-~~-~~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~~~gr~~ 73 (114)
T 2oqg_A 18 LSDETRWEILTEL-GR-ADQSASSLATRLPVSRQAIAKHLNALQA--CGLVESVKVGREI 73 (114)
T ss_dssp TTCHHHHHHHHHH-HH-SCBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEE
T ss_pred hCChHHHHHHHHH-Hc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEEecCCEE
Confidence 3445678899999 43 4599999999999999999999999954 5777766666543
No 19
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=73.34 E-value=2.9 Score=40.86 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=47.9
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC--CcEEEEcCcchH
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE--GDVLYVFPNNYR 146 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~--GeIlY~FP~~fR 146 (514)
..+|++.++.. +.||+.+++...|.+..-|+..|..|.+ .|.+=|+++ ||..|=||..|-
T Consensus 169 ~~~vLe~a~~~-g~vt~~~L~~~lgW~~~Ra~~~L~~l~~--~G~lwvD~q~~~e~~Yw~P~lf~ 230 (233)
T 1u5t_A 169 QTKILEICSIL-GYSSISLLKANLGWEAVRSKSALDEMVA--NGLLWIDYQGGAEALYWDPSWIT 230 (233)
T ss_dssp HHHHHHTTTTT-SCCBHHHHHHHHCCCSHHHHHHHHHHHH--TTSSEEECSSSSSCEEECGGGGG
T ss_pred HHHHHHHHHhc-CcCcHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEeCCCCCccceechhhhh
Confidence 35666777755 5699999999999999999999998755 577777764 488999997653
No 20
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=73.08 E-value=4.3 Score=33.95 Aligned_cols=42 Identities=10% Similarity=0.020 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
..-..|++.|++. +++|+.|+|..-|+|...+++.|..|...
T Consensus 2 m~L~~Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~ 43 (87)
T 2k02_A 2 ASLMEVRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp CCTHHHHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3446799999775 58999999999999999999999999865
No 21
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=72.75 E-value=4.3 Score=33.02 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
..-..|++.|++. +++|+.|+|..-|+|...+++.|..|...
T Consensus 2 m~L~~Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 2 ASLIQVRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp CCHHHHHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3446789999775 57999999999999999999999999876
No 22
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=71.92 E-value=12 Score=30.54 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=47.3
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
|....|-+|+..+. .+..|++|+|...|++...+.+.|..|- ..|-++...+|.-+|..
T Consensus 23 l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 23 LGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp TCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCCEEEEE
Confidence 44556788999987 3458999999999999999999999997 46788877777755543
No 23
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=70.56 E-value=17 Score=30.42 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=47.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEc
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVF 141 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeI-lY~F 141 (514)
|....|-+|+..+. .+.+|++|+|...|++...+-+-|..|.. .|-++...+|.- .|.-
T Consensus 15 l~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~~~gr~~~y~l 74 (118)
T 3f6o_A 15 LADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTHKQGRVRTCAI 74 (118)
T ss_dssp HTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEEecCCEEEEEE
Confidence 34567888999997 46789999999999999999999999953 578887777764 4444
No 24
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=69.87 E-value=4.8 Score=32.24 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=46.9
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~Ge-IlY~F 141 (514)
....|-+|+..+.+ +.+|++|+|...|++...+.+.|..|.. .|-++...+|. +.|..
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 21 ANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp CSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCCEEEE
T ss_pred CCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 34567788988876 6899999999999999999999999965 57888777775 44544
No 25
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=68.06 E-value=8 Score=32.03 Aligned_cols=56 Identities=27% Similarity=0.416 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~ 140 (514)
...|-+|+..+.. +..|++|+|...|++...+.+.|..|.. .|-++...+|.-+|.
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y 79 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKS--GGLVEARREGTRQYY 79 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEE
Confidence 4567789999864 6789999999999999999999999965 578887777775554
No 26
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=67.11 E-value=3.5 Score=34.74 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=32.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHH
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKAL 118 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L 118 (514)
+.+-+.+|++.+.+.+ +|+.|||..+|+|...+.+.|
T Consensus 5 ~~~R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 5 IKERTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHH
Confidence 3455678899999887 999999999999999998877
No 27
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=65.11 E-value=11 Score=32.59 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=46.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc--CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKA--GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~a--GL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
.+.+|++.+.+.| +.|++++|... |++...+.+-|..|..+ |-++....| +|.-..
T Consensus 14 ~d~~IL~~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~--GLV~~~~rg--~Y~LT~ 71 (111)
T 3b73_A 14 WDDRILEIIHEEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH--DLLQPLANG--VYVITE 71 (111)
T ss_dssp HHHHHHHHHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT--TSEEECSTT--CEEECH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCEEecCCc--eEEECc
Confidence 3688999998766 89999999999 99999999999999864 666665555 776644
No 28
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=64.05 E-value=3.8 Score=35.71 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 010241 77 DKLPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 77 ~~l~~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
.+++.+.|++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 48 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGS 48 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHH
Confidence 356777888887775 55688 89999999999998654
No 29
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=59.67 E-value=14 Score=29.37 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=43.4
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV 131 (514)
.|-.-..+++-+...|+-+-+.++|++-|++.+++-..|..|++. |.+++
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~K--GLI~l 57 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNK--GLIAV 57 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHT--TSEEE
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHC--CCeec
Confidence 455668899999999999999999999999999999999999875 44443
No 30
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=59.45 E-value=18 Score=30.40 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
...|-+|+..+.. +..|++|+|...|++...+.+.|..|-. .|-++...+|.-+|..
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 76 (118)
T 2jsc_A 20 DPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVATYEGRQVRYA 76 (118)
T ss_dssp SHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEEECSSSEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEEEECCEEEEE
Confidence 4567789998873 4589999999999999999999999975 6888877777644433
No 31
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=59.38 E-value=36 Score=26.47 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=43.9
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc---CCcEEEE
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDVLYV 140 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse---~GeIlY~ 140 (514)
...+-+|+..+.+.+ ..|+.|+|...|++...+-+.|..|..+ |-++... +|.-.|.
T Consensus 15 ~~~~~~iL~~L~~~~-~~~~~ela~~l~is~~tvs~~l~~L~~~--gli~~~~~~~~~r~~~~ 74 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRR-KAPFSQIQKVLDLTPGNLDSHIRVLERN--GLVKTYKVIADRPRTVV 74 (100)
T ss_dssp SHHHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEECSSSCEEEE
T ss_pred ChHHHHHHHHHHhcC-CcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCcceEEE
Confidence 445677888887654 6999999999999999999999999876 6776433 5554443
No 32
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=58.92 E-value=53 Score=27.33 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHHHHHHh---cCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 85 NRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 85 ~~im~ave~---~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
..++.++.. .+..+|+.|+|...|++...+.+.|..|..+ |-++...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~--Gli~r~~ 65 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK--GLVKKKE 65 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC--CCEEecC
Confidence 445555544 4788999999999999999999999999887 7887665
No 33
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=57.66 E-value=24 Score=29.98 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP 142 (514)
...|-+|+..+.+ +..|++|+|...|++...+-+.|..|-. .|-+....+|.-+|...
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~~~gr~~~y~l 102 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYRKQGRHVYYQL 102 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 3456678888863 5689999999999999999999999987 67787777776555443
No 34
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=56.44 E-value=4.8 Score=34.66 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=23.7
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCH
Q 010241 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l 111 (514)
...|++|++|. .+.|| .+|+.|||.++|++.
T Consensus 6 ~~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 6 RLSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCH
Confidence 34577777665 45698 689999999999954
No 35
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=56.42 E-value=16 Score=35.17 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=40.2
Q ss_pred HhcCCceeehhhhhhcCCCHHHHHHHHH--------------HHHhhcCCc--------eEeccCCcEEEEcCcchHHHH
Q 010241 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTDGF--------LEVSDEGDVLYVFPNNYRAKL 149 (514)
Q Consensus 92 e~~g~rvTvgDVAa~aGL~l~~ae~~L~--------------aLAsd~~G~--------LqVse~GeIlY~FP~~fRs~l 149 (514)
.....++|+.|||..+|+|..++-++|. +.|.+.|=. |....++-|..++|.....-+
T Consensus 4 ~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~ 83 (366)
T 3h5t_A 4 GRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAF 83 (366)
T ss_dssp ---CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHH
T ss_pred CccCCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccc
Confidence 3445789999999999999999987774 334443322 455567778888887533333
Q ss_pred hhhhHHHhHHH
Q 010241 150 AAKSFRLKVEP 160 (514)
Q Consensus 150 ~~Ks~r~rl~~ 160 (514)
.+.+|..-++.
T Consensus 84 ~~~~~~~~~~g 94 (366)
T 3h5t_A 84 EDMASVDFLAG 94 (366)
T ss_dssp HSHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 44444443333
No 36
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=55.75 E-value=6 Score=34.39 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=24.6
Q ss_pred hhHHHHH----HHHhcCCceeehhhhhhcCCCHHHH
Q 010241 83 VRNRAMD----AVDACNRRVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im~----ave~~g~rvTvgDVAa~aGL~l~~a 114 (514)
.|++|++ .+.+.|+.+|+.|||.++|++....
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tl 49 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTV 49 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Confidence 3555655 4566799999999999999987553
No 37
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=55.47 E-value=6.7 Score=33.23 Aligned_cols=34 Identities=6% Similarity=0.114 Sum_probs=23.7
Q ss_pred chhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
|+.|++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 1 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 39 (194)
T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNL 39 (194)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhH
Confidence 345566655 4567786 599999999999987544
No 38
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=54.38 E-value=32 Score=28.19 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
..+-+|+.++.+ +..|+.|+|...|++...+-+.|..|-. -|.+....+|.-+|..+.
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEEc
Confidence 456788888887 4689999999999999999999999988 567766666665554444
No 39
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=54.29 E-value=7.6 Score=32.57 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=23.7
Q ss_pred hhhHHHHHHHH----hcCC-ceeehhhhhhcCCCHH
Q 010241 82 DVRNRAMDAVD----ACNR-RVTIGDVAGKAGLKLN 112 (514)
Q Consensus 82 ~~~~~im~ave----~~g~-rvTvgDVAa~aGL~l~ 112 (514)
..|++|++|.. +.|+ .+|+.|||.++|++..
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~ 47 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRS 47 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHh
Confidence 34566766655 4587 8999999999999754
No 40
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=53.91 E-value=5.1 Score=31.81 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCeEeeeeccCccCCC
Q 010241 274 KLIGEYIASNGGVVTAEELAPYLDID 299 (514)
Q Consensus 274 k~Ig~~Ir~N~GvV~AEQLAPyLD~~ 299 (514)
+.+-.|||+|||++-.+.++...+++
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~ 38 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVE 38 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCC
Confidence 67889999999999999999999975
No 41
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=53.68 E-value=7.3 Score=32.80 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=25.3
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++|. .+.|+ .+|+.|||.++|++....
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 46 (195)
T 3ppb_A 8 RTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTL 46 (195)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHH
Confidence 34566776665 45586 799999999999986543
No 42
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=53.64 E-value=17 Score=29.87 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=43.0
Q ss_pred chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 010241 81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (514)
Q Consensus 81 ~~~~~~im~ave~~g--~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~ 134 (514)
++.-+.+.+++..++ ...|.-++|.+-|++..++.+.|-.|... |-+.+..+
T Consensus 11 ~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk--G~V~~~~~ 64 (75)
T 1sfu_A 11 AEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE--DTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEECC
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC--CCEecCCC
Confidence 478899999999986 44799999999999999999999999764 55555443
No 43
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=53.57 E-value=59 Score=27.26 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=43.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchH
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~fR 146 (514)
..+.+...++..+..++..|++..+|++.++.++.|..|.+.. .-+.+..+++..| +..++-
T Consensus 3 ~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~-~~~~~~~~~~~~~-~~~~~~ 64 (135)
T 2v9v_A 3 PEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAG-QVTLLRVENDLYA-ISTERY 64 (135)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-CEEEEEETTEEEE-EEHHHH
T ss_pred HHHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCC-cEEEEecCCCeEE-ecHHHH
Confidence 3456777888888888779999999999999998888887543 3555544344334 444333
No 44
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=53.13 E-value=6.7 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=24.8
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.||. +|+.|||.++|++....
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~ 40 (190)
T 3vpr_A 3 TTRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAAL 40 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 345566554 7788985 89999999999986543
No 45
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=52.47 E-value=7.2 Score=33.55 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=24.9
Q ss_pred hhHHHHH----HHHhcCCceeehhhhhhcCCCHHHH
Q 010241 83 VRNRAMD----AVDACNRRVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im~----ave~~g~rvTvgDVAa~aGL~l~~a 114 (514)
.|++|++ .+.+.||.+|+.|||..+|++....
T Consensus 16 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tl 51 (194)
T 2q24_A 16 NRDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTL 51 (194)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHH
Confidence 3555655 5667899999999999999987653
No 46
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=52.47 E-value=23 Score=31.52 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|.-+|..
T Consensus 55 L~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~--aGlV~~~~~Gr~~~y~ 113 (151)
T 3f6v_A 55 AAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTE--AGLVTPRKDGRFRYYR 113 (151)
T ss_dssp HTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEE
Confidence 34567889999997 35699999999999999999999999954 4788887778765544
No 47
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=52.34 E-value=6.4 Score=34.00 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=26.7
Q ss_pred CCCchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCH
Q 010241 78 KLPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (514)
Q Consensus 78 ~l~~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l 111 (514)
+.+.+.|++|++| +.+.|+. +|+.|||..+|++.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 47 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAK 47 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCT
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcH
Confidence 4566677777665 5578886 99999999999964
No 48
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=51.94 E-value=13 Score=30.04 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=45.8
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~Ge-IlY~F 141 (514)
....|-+|+..+.. +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|.-
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 21 SHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIKQIFYRL 79 (102)
T ss_dssp CSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSSCCEEEE
T ss_pred CCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 44567889999964 4599999999999999999999999954 56787777665 45544
No 49
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=51.54 E-value=65 Score=30.21 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
+|++++.+.+...|+.|+|...|++...+-+-|..|.. .|.++-.++| -|.-
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~--~Y~l 63 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDK--RYVP 63 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEECCCC--cEEE
Confidence 56778877777899999999999999999999988876 5778766444 3544
No 50
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=51.36 E-value=21 Score=27.97 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=36.6
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
+-.++..+-..+..+|+.|+|...|++...+.+.|..|.. .|-++...
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~--~g~v~~~~ 70 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE--LGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEeec
Confidence 3445555555567899999999999999999999999954 46666543
No 51
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=50.94 E-value=16 Score=31.53 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
.+.+|++++.+. ++.|..|+|...|++...+.+-|..|-..
T Consensus 8 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 8 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889988775 58999999999999999999999999765
No 52
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.90 E-value=35 Score=24.90 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEecc-CCcEEEE
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSD-EGDVLYV 140 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~LqVse-~GeIlY~ 140 (514)
.|..++..+-+.+..+|+.|++... +++...+.+.|..+ |-+++.. +|...|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l-----g~v~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL-----HLVKVPTNNGSYKYS 63 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH-----TCEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc-----CCEEEecCCCceeee
Confidence 4555555555557789999999999 99999999999944 4456654 4555564
No 53
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=50.13 E-value=21 Score=28.98 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=45.0
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
....|-+|+..+-..| ..|++|+|...|++...+-+-|..|-.. -++...+|.-+|..
T Consensus 25 ~~~~Rl~IL~~l~~~~-~~~~~ela~~l~is~stvs~hL~~L~~~---lv~~~~~gr~~~y~ 82 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHK-ALNVTQIIQILKLPQSTVSQHLCKMRGK---VLKRNRQGLEIYYS 82 (99)
T ss_dssp CSHHHHHHHHHHHHHS-CEEHHHHHHHHTCCHHHHHHHHHHHBTT---TBEEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHCC-CcCHHHHHHHHCcCHHHHHHHHHHHHHH---hhhheEeCcEEEEE
Confidence 3456778887766554 5999999999999999999999988765 67766677755544
No 54
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=49.39 E-value=7.4 Score=34.37 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=25.7
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 80 ~~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
++..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 3 ~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 41 (228)
T 3nnr_A 3 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGN 41 (228)
T ss_dssp -CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred CchHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCcc
Confidence 45567777665 5667986 9999999999997643
No 55
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=49.26 E-value=14 Score=35.27 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=42.3
Q ss_pred HHHHHHHHhc---CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 85 NRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 85 ~~im~ave~~---g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
.|.++.++-+ +..+|+.|+|..+|++...+-+-|..|.. .|.|+-.++| -|.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~~~--~Y~l 78 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRADG--SYSL 78 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--eEEe
Confidence 4555555554 46899999999999999999999998876 6888887766 6765
No 56
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=48.86 E-value=20 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq 130 (514)
...+|++.+.+ ++++|..|+|...|++...+.+.|..|-.+ |.++
T Consensus 10 ~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~--G~i~ 54 (151)
T 2dbb_A 10 VDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKL--GIIR 54 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH--TSEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEE
Confidence 45578988876 578999999999999999999999999765 4443
No 57
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=48.12 E-value=8.8 Score=32.66 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=26.0
Q ss_pred chhhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.||.+|+.|||.++|++....
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tl 45 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSM 45 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHH
Confidence 4556677655 556798899999999999976543
No 58
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=48.09 E-value=60 Score=27.22 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD 136 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~Ge 136 (514)
..|-+|+..+.+. +..|++|+|...|++...+.+-|..|. ..|-++...+|.
T Consensus 42 ~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~gr 93 (122)
T 1u2w_A 42 ENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGK 93 (122)
T ss_dssp HHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC----
T ss_pred HHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEECC
Confidence 4466788888754 468999999999999999999999998 467777776665
No 59
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=47.67 E-value=8.2 Score=33.01 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 85 ~~im~ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
+.+++.+.+.|+ .+|+.|||.++|++...
T Consensus 14 ~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 43 (192)
T 2zcm_A 14 DNAITLFSEKGYDGTTLDDISKSVNIKKAS 43 (192)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHcCcccCCHHHHHHHhCCChHH
Confidence 444556778898 69999999999997654
No 60
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=47.30 E-value=21 Score=30.80 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=36.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCce
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFL 129 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~L 129 (514)
.+.+|++.+.+. ++.|..|+|.+.|++...+.+-|..|... |-+
T Consensus 8 ~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~--G~i 51 (150)
T 2w25_A 8 IDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESR--GVV 51 (150)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCE
Confidence 456889998654 58999999999999999999999999653 444
No 61
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=47.03 E-value=16 Score=31.36 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
.+.+|++.+.+ +.++|..|+|...|++...+.+-|..|...
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46788998865 458999999999999999999999999764
No 62
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=46.48 E-value=25 Score=27.42 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEc
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVF 141 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse--~GeIlY~F 141 (514)
..+-+|+..+... +.+|+.|+|...|++...+.+.|..|... |.++... ++-..|.+
T Consensus 20 ~~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~--glv~~~~~~~~r~~~~~ 78 (109)
T 1sfx_A 20 PSDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKR--GFVRREIVEKGWVGYIY 78 (109)
T ss_dssp HHHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEeecCCceEEEE
Confidence 4566788988765 45999999999999999999999999664 6666543 45555544
No 63
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=46.26 E-value=21 Score=32.18 Aligned_cols=41 Identities=7% Similarity=0.261 Sum_probs=35.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
.+.+|++++.+. .+.|+.|+|.+.|++...+.+-|..|-.+
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456889998765 58999999999999999999999999664
No 64
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=45.54 E-value=8 Score=33.27 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.0
Q ss_pred hhHHHHHH----HHhcCCceeehhhhhhcCCCHHHH
Q 010241 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im~a----ve~~g~rvTvgDVAa~aGL~l~~a 114 (514)
.|++|++| +.+.||.+|+.|||..+|++....
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~ 52 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSATL 52 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHH
Confidence 45666654 557799999999999999987654
No 65
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=45.38 E-value=14 Score=35.69 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
+|++++...+..+|+.|+|..+||+...+-+=|..|.. .|.|+-+++| -|.-
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~~~~--~Y~L 85 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARSADG--TLRI 85 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEECTTS--EEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--cEEe
Confidence 46788888888899999999999999999999999876 4788877665 4665
No 66
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.32 E-value=50 Score=28.20 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceE-e-ccCCcEEEEc
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLE-V-SDEGDVLYVF 141 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~Lq-V-se~GeIlY~F 141 (514)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|... |-+. + .++|...|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~--Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS--GLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT--TSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC--CCEEEEEeCCCceEEEe
Confidence 346788999999988899999999877 99999999999988765 3333 2 3467788875
No 67
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=45.28 E-value=22 Score=30.69 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=35.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
.+.+|++++.+. .+.|..|+|.+.|++...+.+-|..|-..
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 456889988765 68999999999999999999999999664
No 68
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=44.66 E-value=38 Score=26.19 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aG----L~l~~ae~~L~aLAsd~~G~LqVse~GeIl 138 (514)
..+..||+++-+ .+.+|+.|++...+ ++...+..-|..|... |.++...+|.-.
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k--Glv~r~~~gr~~ 66 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK--GALNHHKEGRVF 66 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TSEEEEEETTEE
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC--CCeEEEecCCEE
Confidence 456789999988 56899999998875 7889998888888764 788777767643
No 69
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=44.61 E-value=12 Score=30.00 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHH
Q 010241 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALA 122 (514)
Q Consensus 85 ~~im~ave~~g~-rvTvgDVAa~aGL~l~~ae~~L~aLA 122 (514)
..|+++++..|| +.++.++|...|++.+++++.|..+-
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 567899999999 78999999999999999999887664
No 70
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=44.42 E-value=12 Score=31.37 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGT 44 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 445666655 4567986 9999999999997654
No 71
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.19 E-value=16 Score=31.87 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=36.7
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcCC---CHHH-HHHHHHHHHhhc
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNE-AQKALQALAADT 125 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL---~l~~-ae~~L~aLAsd~ 125 (514)
.++|++|++.++ +.-.|+.|+|...|+ +..+ +-..|..+|--.
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl 56 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVISKIA 56 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHH
Confidence 478999999997 789999999999999 6677 777888777654
No 72
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=44.12 E-value=24 Score=29.73 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=35.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
.+.+|++.+.+. .+.|..|+|.+.|++...+.+.|..|..+
T Consensus 5 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 5 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456788888654 57899999999999999999999999765
No 73
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=44.09 E-value=12 Score=31.88 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=24.2
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
.|++|++| +.+.|+ .+|+.|||.++|++....
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPML 51 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHH
Confidence 45566555 566697 899999999999976543
No 74
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=43.43 E-value=11 Score=32.53 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=25.3
Q ss_pred chhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
...|++|++|. .+.|+. +|+.|||.++|++....
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 54 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLI 54 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHH
Confidence 34667776665 455985 99999999999976543
No 75
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=43.41 E-value=10 Score=32.03 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.3
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
..|++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMI 45 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHH
Confidence 34556655 4677898 899999999999987653
No 76
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=42.85 E-value=21 Score=33.14 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAs 123 (514)
-+..|++.+++ .+.+|+.|+|..-|.|..+.++.|.+|.-
T Consensus 13 R~~~i~~~l~~-~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDS-NPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-CCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 34567777776 56899999999999999999999998853
No 77
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=42.79 E-value=28 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 010241 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (514)
Q Consensus 83 ~~~~im~ave~~g-~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq 130 (514)
.+-.|++.++..| ..+|..|+|.+++|+..++...|..|-. -|-++
T Consensus 21 ~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp SHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 5578899999865 4899999999999999999999999955 57776
No 78
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=42.78 E-value=28 Score=29.91 Aligned_cols=45 Identities=11% Similarity=0.260 Sum_probs=37.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq 130 (514)
.+.+|++.+.+. .+.|..|+|.+.|++...+.+.|..|... |.++
T Consensus 6 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~--G~i~ 50 (144)
T 2cfx_A 6 IDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESF--GIIK 50 (144)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCeE
Confidence 355889988764 67999999999999999999999999654 4443
No 79
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=42.45 E-value=12 Score=31.93 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=24.3
Q ss_pred chhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHH
Q 010241 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (514)
Q Consensus 81 ~~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~ 112 (514)
...|++|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 47 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTG 47 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCch
Confidence 345556655 4677898 6999999999999754
No 80
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=42.44 E-value=23 Score=32.22 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
-|.+.+++.|+-.|+.|+|...|++...+.+-|.+|..+ |.|+..
T Consensus 13 ~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~--G~i~~~ 57 (196)
T 3k2z_A 13 FIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK--GYIERK 57 (196)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEECC
T ss_pred HHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC--CCEEec
Confidence 344555678999999999999999999999999988764 666544
No 81
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=42.37 E-value=24 Score=33.14 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
+|++++.+.+...|+.|+|..+|++...+-+-|..|.. .|.++-.+++. -|.-
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~~-~Y~l 62 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEE--EFLVEALGPAG-GFRL 62 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHT--TTSEEECGGGC-EEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeCCCC-eEEE
Confidence 46777777777899999999999999999999988875 47777655422 3544
No 82
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=42.35 E-value=39 Score=27.96 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 41 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--glv~r~ 87 (147)
T 1z91_A 41 PQYLALLLLWEHE-TLTVKKMGEQLYLDSGTLTPMLKRMEQQ--GLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHTTTCCHHHHHHHHHHHHHH--TSEECC
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCcCcHHHHHHHHHHC--CCEEec
Confidence 4567899998876 8999999999999999999999999987 677654
No 83
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=41.99 E-value=14 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=24.3
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.||. +|+.|||.++|++...
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t 47 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGT 47 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcch
Confidence 3445666555 6667976 9999999999997654
No 84
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=41.99 E-value=29 Score=32.03 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=44.7
Q ss_pred CCCCch-hhHHHHHHHHhcCCc----eeeh-h-hhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CC
Q 010241 77 DKLPAD-VRNRAMDAVDACNRR----VTIG-D-VAGKAGLKLNEAQKALQALAADTDGFLEVSD--EG 135 (514)
Q Consensus 77 ~~l~~~-~~~~im~ave~~g~r----vTvg-D-VAa~aGL~l~~ae~~L~aLAsd~~G~LqVse--~G 135 (514)
-+++++ ...+|++.++..++. +|.. + +|.+.|.+..-|+..|..+-. .|.|=+++ +|
T Consensus 93 ~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~--~G~l~~D~~~~G 158 (169)
T 1u5t_B 93 TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVD--EGDLLIDKQLSG 158 (169)
T ss_dssp ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH--HTSEEEEECSSC
T ss_pred eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCc
Confidence 455555 346789999988777 9999 9 999999999999999998665 46666665 45
No 85
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=41.93 E-value=1.4e+02 Score=24.26 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec---cCCcEEEEcCcc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGDVLYVFPNN 144 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs---e~GeIlY~FP~~ 144 (514)
..-+++..+......+|+.|+|...|++...+-+.|..|.. .|.++.. +++...|..+.+
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~--~G~v~r~~~~~d~r~~~~~~~~ 89 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE--LGFVRKVWIKGERKNYYEAVDG 89 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCSSCEEEECCH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCCceEEEeecch
Confidence 34567888853456799999999999999999999988876 4778764 456677888754
No 86
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=41.90 E-value=14 Score=31.39 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=25.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.||. +|+.|||..+|++....
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 54 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATV 54 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHH
Confidence 456677665 5566987 99999999999976543
No 87
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=41.81 E-value=14 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=24.1
Q ss_pred hhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im~----ave~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
.|++|++ .+.+.|+. +|+.|||.++|++....
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 51 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAI 51 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceee
Confidence 4555554 45678986 99999999999976543
No 88
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=41.65 E-value=35 Score=28.15 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+. ++.+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 83 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEM--GLVVRV 83 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHC--CCEEee
Confidence 4556788887 778999999999999999999999999887 777654
No 89
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=41.39 E-value=13 Score=31.43 Aligned_cols=29 Identities=31% Similarity=0.522 Sum_probs=22.3
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCH
Q 010241 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 83 ~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l 111 (514)
.|++|++| +.+.|+ .+|+.|||..+|++.
T Consensus 8 ~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 8 TRARILGAATQALLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCG
T ss_pred CHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 45555554 566898 799999999999963
No 90
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=41.13 E-value=9.8 Score=32.65 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=22.8
Q ss_pred chhhHHHHHHH-H----hcC-CceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDAV-D----ACN-RRVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~av-e----~~g-~rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++|. + +.| ..+|+.|||.++|++....
T Consensus 23 ~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~ 62 (212)
T 3nxc_A 23 RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAAL 62 (212)
T ss_dssp CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHH
Confidence 35678888883 2 346 4699999999999986543
No 91
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=41.05 E-value=8.1 Score=33.64 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCchhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHH
Q 010241 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (514)
Q Consensus 79 l~~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l~ 112 (514)
++|+.|++|++|. .+.|| .+|+.|||..+|++..
T Consensus 2 ~~~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~Agvskg 40 (202)
T 2id6_A 2 HMLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKG 40 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTH
T ss_pred CchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHH
Confidence 3466777776654 56787 6999999999999653
No 92
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=40.96 E-value=32 Score=30.88 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
+.+.+|++.+.+. .+.|..|+|.+.|++...+.+-|..|-.+
T Consensus 17 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 17 DLDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456889998765 58999999999999999999999999543
No 93
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=40.93 E-value=49 Score=27.14 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=41.4
Q ss_pred hhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g-~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...+ ..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 80 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK--KLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 4567889998887 79999999999999999999999999876 777754
No 94
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.52 E-value=30 Score=30.20 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=35.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
.+.+|++++.+. .+.|..|+|.+.|++...+.+-|..|-..
T Consensus 11 ~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 11 TDIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 455789988765 57999999999999999999999999654
No 95
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=40.47 E-value=12 Score=31.45 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 46 (196)
T 3col_A 10 NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSN 46 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHH
Confidence 456666655 555688 79999999999997654
No 96
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=40.17 E-value=14 Score=31.42 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=24.9
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tl 45 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNF 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHH
Confidence 445566554 567897 799999999999987554
No 97
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=39.52 E-value=12 Score=33.41 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=23.7
Q ss_pred hhHHHHHHHHhcCCc-eeehhhhhhcCCCHHH
Q 010241 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im~ave~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
.-+.+++.+.+.|+. +|+.|||..+|++...
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 66 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSS 66 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhH
Confidence 344556666778985 9999999999997643
No 98
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=39.40 E-value=11 Score=32.90 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=24.1
Q ss_pred hhHHHHH----HHHhcCCceeehhhhhhcCCCHHH
Q 010241 83 VRNRAMD----AVDACNRRVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im~----ave~~g~rvTvgDVAa~aGL~l~~ 113 (514)
.|.+|++ .+.+.||.+|+.|||.++|++...
T Consensus 13 ~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~t 47 (224)
T 1t33_A 13 AKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAA 47 (224)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHH
Confidence 4555654 466789889999999999997654
No 99
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=39.33 E-value=14 Score=31.82 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=25.7
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t 47 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKAS 47 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHH
Confidence 4456666655 677898 59999999999997654
No 100
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=39.11 E-value=13 Score=31.93 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|| .+|+.|||..+|++....
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 63 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTL 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHH
Confidence 3455666555 567797 899999999999976543
No 101
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.10 E-value=34 Score=28.04 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~-rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...++ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 83 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK--KLLYRK 83 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC--CCEEee
Confidence 35578899988875 8999999999999999999999999876 666543
No 102
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=38.39 E-value=15 Score=30.93 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=25.2
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|+ .+|+.|||..+|++....
T Consensus 9 ~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tl 47 (197)
T 3rd3_A 9 DDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSF 47 (197)
T ss_dssp -CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhH
Confidence 3466666665 556788 699999999999986543
No 103
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=38.32 E-value=76 Score=25.81 Aligned_cols=48 Identities=8% Similarity=0.120 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++...
T Consensus 32 ~~~~iL~~l~~~~-~~~~~ela~~l~is~~~vs~~l~~L~~~--gli~~~~ 79 (142)
T 3bdd_A 32 TRYSILQTLLKDA-PLHQLALQERLQIDRAAVTRHLKLLEES--GYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEecC
Confidence 3456888888765 6999999999999999999999999886 6776543
No 104
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=38.28 E-value=41 Score=27.93 Aligned_cols=46 Identities=13% Similarity=0.348 Sum_probs=39.6
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
+-.++..+...| .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 42 ~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 87 (148)
T 3nrv_A 42 EWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEK--KYIEVN 87 (148)
T ss_dssp HHHHHHHHHHSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 456888888877 8999999999999999999999999987 777754
No 105
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=38.21 E-value=36 Score=28.63 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHHhc--CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 87 AMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 87 im~ave~~--g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
+|..+.+. +..+|+.|+|.+.|+|...+++.|..|.. .|-++..
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~--~Glv~~~ 59 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN--AGLVKSI 59 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEec
Confidence 45555554 56799999999999999999999999976 4556544
No 106
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=38.04 E-value=50 Score=24.17 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
.++-.++++.| |+.++|...|++-...-+-+. ...+-.|+.++.|+.+|.-
T Consensus 4 ~~l~~~~~~~g---s~~~~A~~lgis~~~vs~~~~---~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 4 IPLSKYLEEHG---TQSALAAALGVNQSAISQMVR---AGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp EEHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHH---TTCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHcC---CHHHHHHHHCcCHHHHHHHHc---CCCCCCeEEccCceEehHh
Confidence 35667788887 899999999999777755552 1223334449999999864
No 107
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=37.98 E-value=36 Score=28.56 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...+..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~r~ 87 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER--GLVVRT 87 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT--TSEEC-
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 456788899888878999999999999999999999999875 777653
No 108
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=37.88 E-value=27 Score=30.78 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~ 125 (514)
...+|++++.+ +.|+|..++|.+.|+|...+.+-|..|-.+-
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45678888865 5689999999999999999999999997653
No 109
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=37.88 E-value=16 Score=30.62 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=22.6
Q ss_pred hhhHHHH----HHHHhcCC-ceeehhhhhhcCCCH
Q 010241 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 82 ~~~~~im----~ave~~g~-rvTvgDVAa~aGL~l 111 (514)
..|++|+ +.+.+.|+ .+|+.|||.++|++.
T Consensus 6 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 40 (191)
T 1sgm_A 6 DSREKILHTASRLSQLQGYHATGLNQIVKESGAPK 40 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCS
T ss_pred chHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCc
Confidence 3455555 45667887 699999999999954
No 110
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=37.73 E-value=14 Score=31.77 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=22.6
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCC
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLK 110 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~ 110 (514)
..|++|++| +.+.|+. +|+.|||.++|++
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs 46 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIR 46 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCC
Confidence 356666655 5667885 9999999999995
No 111
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=37.61 E-value=1.4e+02 Score=24.95 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=35.5
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
++.+|+.|+|...|++...+.+.|..|.. .|-++...++ .++.=|+
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~--~Glv~r~~~~-~~~LT~~ 65 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDK--DEYLIYEKYR-GLVLTSK 65 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEETTT-EEEECHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEeeCc-eEEEchh
Confidence 45799999999999999999999999987 4777765443 3333344
No 112
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=37.37 E-value=16 Score=31.20 Aligned_cols=34 Identities=9% Similarity=0.263 Sum_probs=25.5
Q ss_pred CchhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 80 PADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 80 ~~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
....+++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t 52 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSAL 52 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhh
Confidence 34566777665 455688 79999999999997643
No 113
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=37.22 E-value=16 Score=31.30 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=25.1
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...+++|++| +.+.|| .+|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 53 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRT 53 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcch
Confidence 4556677665 556798 59999999999997643
No 114
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=37.08 E-value=16 Score=31.24 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.0
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|+ .+|+.|||..+|++....
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 51 (212)
T 3knw_A 13 EAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSF 51 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHH
Confidence 3566777664 566787 799999999999986544
No 115
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=36.91 E-value=13 Score=31.15 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSL 40 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchh
Confidence 456666665 556788 59999999999997543
No 116
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=36.87 E-value=19 Score=30.92 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=23.5
Q ss_pred hhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
.|++|++ .+.+.|+ .+|+.|||.++|++...
T Consensus 5 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (185)
T 2yve_A 5 KKEMILRTAIDYIGEYSLETLSYDSLAEATGLSKSG 40 (185)
T ss_dssp HHHHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHcChhhccHHHHHHHhCCChHH
Confidence 4555554 5667798 69999999999997654
No 117
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=36.75 E-value=17 Score=30.97 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=24.8
Q ss_pred CchhhHHHHHHH----HhcCCc-eeehhhhhhcCCCH
Q 010241 80 PADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKL 111 (514)
Q Consensus 80 ~~~~~~~im~av----e~~g~r-vTvgDVAa~aGL~l 111 (514)
....|++|++|. .+.|+. +|+.|||.++|++.
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCc
Confidence 456677777665 467875 99999999999953
No 118
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=36.73 E-value=33 Score=29.69 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHhc--CCceeehhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeccCCcEE
Q 010241 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVL 138 (514)
Q Consensus 82 ~~~~~im~ave~~--g~rvTvgDVAa~aGL~--l~~ae~~L~a--LAsd~~G~LqVse~GeIl 138 (514)
+.+.++.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++-...||==|..+|.+-
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~ 65 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKIS 65 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCS
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCC
Confidence 5788999999998 5668889999999994 4444455544 344679999999999884
No 119
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=36.56 E-value=17 Score=31.00 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=25.1
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 43 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRS 43 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHH
Confidence 4456677665 5567886 9999999999997654
No 120
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.51 E-value=65 Score=28.02 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEe--ccCCcEEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEV--SDEGDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~LqV--se~GeIlY~F 141 (514)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|... |-+.. .++|...|..
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~--Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES--GLVKELTYGDASSRFDF 86 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT--TSEEEECCTTSCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC--CCEEEEeeCCCceEEEC
Confidence 3567888999999988889999999876 89999999999998865 34432 2356677765
No 121
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=36.21 E-value=1.2e+02 Score=24.90 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=39.9
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
+-.++..+...+. |+.|+|...|++...+-+.|..|..+ |.++-..
T Consensus 39 ~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~--Glv~r~~ 84 (144)
T 3f3x_A 39 DFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAK--GLVRRIR 84 (144)
T ss_dssp HHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHC--CCEEecc
Confidence 4578889988777 99999999999999999999999988 7777553
No 122
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=36.16 E-value=18 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.||. +|+.|||..+|++....
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (216)
T 3s5r_A 10 NTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMI 47 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHH
Confidence 445666554 6778976 99999999999986543
No 123
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=36.14 E-value=14 Score=31.09 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=21.7
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l 111 (514)
...|++|++| +.+.|+. +|+.|||.++|++.
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 46 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSH 46 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCCh
Confidence 3556677655 5567986 89999999999964
No 124
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=36.07 E-value=28 Score=27.60 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHH-HHHHHHHHHhhcCCceEe
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNE-AQKALQALAADTDGFLEV 131 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~-ae~~L~aLAsd~~G~LqV 131 (514)
.++..+.+.|+.+|+.|+|...|++... +-+.|..|..+ |.++.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~--Glv~~ 63 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA--GLVKE 63 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT--TSEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC--CCeec
Confidence 3566777888789999999999999999 99999999765 67763
No 125
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=35.91 E-value=33 Score=28.39 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+ +|++|+|...|++...+.+.|..|..+ |-++-.
T Consensus 39 ~~~~iL~~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~~~--Glv~r~ 84 (146)
T 3tgn_A 39 TQEHILMLLSEES--LTNSELARRLNVSQAAVTKAIKSLVKE--GMLETS 84 (146)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeEec
Confidence 4567899998877 999999999999999999999999764 666543
No 126
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=35.84 E-value=19 Score=31.15 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=25.7
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|+ .+|+.|||..+|++....
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~ 67 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSF 67 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchh
Confidence 4556666555 566897 799999999999976543
No 127
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=35.76 E-value=16 Score=30.61 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=25.1
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
.+.|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t 46 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTAS 46 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcch
Confidence 3456676655 5677985 9999999999998654
No 128
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=35.75 E-value=16 Score=31.72 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=24.8
Q ss_pred chhhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~----ave~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
+..|++|++ .+.+.|+. +|+.|||.++|++...
T Consensus 2 ~~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t 39 (212)
T 3rh2_A 2 MKTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGN 39 (212)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 345566655 45678987 9999999999997643
No 129
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=35.65 E-value=18 Score=31.11 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=22.0
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCC
Q 010241 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLK 110 (514)
Q Consensus 82 ~~~~~im~----ave~~g~r-vTvgDVAa~aGL~ 110 (514)
..|++|++ .+.+.|+. +|+.|||.++|++
T Consensus 19 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs 52 (216)
T 3qqa_A 19 ARQEKIKAVALELFLTKGYQETSLSDIIKLSGGS 52 (216)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCC
Confidence 34555554 46678976 9999999999995
No 130
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=35.61 E-value=14 Score=32.69 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=24.3
Q ss_pred chhhHHHHHHHH-----hcCC-ceeehhhhhhcCCCHH
Q 010241 81 ADVRNRAMDAVD-----ACNR-RVTIGDVAGKAGLKLN 112 (514)
Q Consensus 81 ~~~~~~im~ave-----~~g~-rvTvgDVAa~aGL~l~ 112 (514)
...+++|++|.. +.|+ .+|+.|||.+||++..
T Consensus 18 ~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~ 55 (185)
T 3o60_A 18 QKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRA 55 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHH
Confidence 345677888744 4465 6999999999999754
No 131
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=35.61 E-value=53 Score=27.23 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+.+.| .+|+.|+|...|++...+-+.|..|..+ |.++..
T Consensus 43 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 89 (150)
T 2rdp_A 43 PQFVALQWLLEEG-DLTVGELSNKMYLACSTTTDLVDRMERN--GLVARV 89 (150)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 4567888888865 7999999999999999999999999887 777654
No 132
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=35.51 E-value=90 Score=25.88 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=51.1
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~a-GL~l~~ae~~L~aLAsd~~G~LqVse~-GeIlY~F 141 (514)
+.++..+|++.+++...++|-.|+.+.. +++.++--.++..|.+ .|.|+.-.+ |.++|..
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~--~gkiel~K~~~~liYr~ 73 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLS--MGQLDLLRSNTGLLYRI 73 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHH--HTSEEEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH--cCCeEEEecCCeEEEEe
Confidence 5677889999999999999999999755 5699999999999998 578887765 6688865
No 133
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.50 E-value=39 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCCchhhHHHHHHHHhc-CCceeehhhhhhcCCCHHHHHHHH
Q 010241 77 DKLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKAL 118 (514)
Q Consensus 77 ~~l~~~~~~~im~ave~~-g~rvTvgDVAa~aGL~l~~ae~~L 118 (514)
+.+..+.-.++++.+++. ...+|+.|+|...|++...-++.+
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~f 44 (120)
T 3mkl_A 2 NALQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKL 44 (120)
T ss_dssp ---CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHH
Confidence 445666778888888776 678999999999999987665443
No 134
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.48 E-value=18 Score=31.11 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=26.0
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tl 49 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATI 49 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHH
Confidence 3456777666 556787 799999999999977653
No 135
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=35.40 E-value=18 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 44 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQL 44 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 445666554 556798 89999999999997643
No 136
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=35.35 E-value=17 Score=32.43 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=25.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
.+.|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tl 81 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTF 81 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHH
Confidence 3566677665 556698 899999999999976543
No 137
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=35.34 E-value=18 Score=31.44 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gt 48 (205)
T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGG 48 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcch
Confidence 345666655 566798 69999999999997654
No 138
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=35.29 E-value=17 Score=31.50 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=24.0
Q ss_pred hhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
.|++|++ .+.+.|| .+|+.|||..+|++...
T Consensus 24 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 59 (214)
T 2zb9_A 24 VRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTT 59 (214)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHH
Confidence 4555554 5667898 79999999999997654
No 139
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=35.28 E-value=18 Score=30.61 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
+.|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgt 38 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGA 38 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHH
Confidence 455666554 567798 69999999999997643
No 140
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=34.98 E-value=19 Score=31.25 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=26.1
Q ss_pred CCchhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 79 LPADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 79 l~~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
.+...|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~t 45 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRT 45 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 344566777665 566898 69999999999997643
No 141
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=34.86 E-value=25 Score=30.16 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|+ .+|+.|||..+|++....
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
Confidence 3456666655 556797 599999999999986554
No 142
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=34.75 E-value=40 Score=27.46 Aligned_cols=47 Identities=9% Similarity=0.146 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 39 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~~--glv~r~ 85 (140)
T 2nnn_A 39 TQWAALVRLGETG-PCPQNQLGRLTAMDAATIKGVVERLDKR--GLIQRS 85 (140)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHTTCCHHHHHHHHHHHHHT--TCEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 3457889998776 7999999999999999999999999876 667654
No 143
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=34.64 E-value=45 Score=27.74 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~~vs~~l~~Le~~--Glv~r~ 87 (152)
T 3bj6_A 41 GQRAILEGLSLTP-GATAPQLGAALQMKRQYISRILQEVQRA--GLIERR 87 (152)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeeec
Confidence 4567888888766 7999999999999999999999999876 667654
No 144
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=34.64 E-value=17 Score=31.26 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 45 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGS 45 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchh
Confidence 445666554 566788 79999999999997544
No 145
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=34.57 E-value=28 Score=34.98 Aligned_cols=39 Identities=8% Similarity=0.242 Sum_probs=35.3
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHH
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLA 122 (514)
+..|++.+.+.+..+|+.|++..||+..+++-.+|+.|-
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 467889999999999999999999999999999998873
No 146
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=34.52 E-value=17 Score=31.90 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt 44 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGT 44 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhH
Confidence 345666554 567898 59999999999997654
No 147
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=34.52 E-value=19 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=23.3
Q ss_pred hhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
.|++|++| +.+.||. +|+.|||.++|++...
T Consensus 10 ~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt 45 (204)
T 3anp_C 10 RRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGT 45 (204)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHH
Confidence 45556554 5667885 9999999999997643
No 148
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=34.49 E-value=51 Score=29.62 Aligned_cols=48 Identities=27% Similarity=0.394 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCC-HHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLK-LNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~-l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.-++|-++.++.|+..|..|+|...|++ ...+.+-+..|+.. |.|.++
T Consensus 11 i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~--~~l~~~ 59 (202)
T 1jhf_A 11 VFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK--GVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC--CCceeC
Confidence 4456777777888888999999999998 88888888888874 567765
No 149
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=34.49 E-value=36 Score=30.73 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=38.3
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
+.+|++.+.+.+..+|+.|+|.+.|+|...+.+.|..|-+ .|--++.+
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~-~G~~I~~~ 70 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVAT 70 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEEE
Confidence 4567888877666799999999999999999999999975 33326543
No 150
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=34.44 E-value=20 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=25.4
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 17 ~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t 54 (212)
T 1pb6_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTN 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhH
Confidence 4567777776 455686 78999999999997654
No 151
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=34.41 E-value=10 Score=32.35 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=25.0
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...|++|++|. .+.|+ .+|+.|||..+|++...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 50 (215)
T 3e7q_A 13 EQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGL 50 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 34566676654 56687 89999999999997654
No 152
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=34.41 E-value=17 Score=30.76 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.3
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.|+. +|+.|||..+|++...
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t 53 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKT 53 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHH
Confidence 4566777655 5567885 9999999999997654
No 153
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=34.22 E-value=14 Score=35.31 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=38.5
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEc
Q 010241 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (514)
Q Consensus 87 im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~-GeIlY~F 141 (514)
|++++.+.+..+|+.|+|.++|++...+-+=|..|.+ .|.|+-+++ |. |.-
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~~~~~--Y~l 62 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVEGARS--YRL 62 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECSSSSE--EEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcCCCCc--EEc
Confidence 3444444456899999999999999999999998875 477776654 43 555
No 154
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.16 E-value=88 Score=27.08 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|...-==+=-..++|...|..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEE
Confidence 346788999999988899999998765 7999999999999887643222233477788876
No 155
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=34.15 E-value=22 Score=30.17 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.6
Q ss_pred chhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...|++|++ .+.+.|| .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t 47 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGA 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchh
Confidence 345666655 4567787 59999999999997654
No 156
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.11 E-value=47 Score=27.47 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
+-.++..+...++.+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~--glv~r~ 83 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG--GLIVRH 83 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCEeeC
Confidence 34678888874567999999999999999999999999886 666654
No 157
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=34.09 E-value=45 Score=28.96 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=41.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.++..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-..
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--GlV~r~~ 102 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK--GLISRQT 102 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC--CCEEeeC
Confidence 356789999887788999999999999999999999999875 7777543
No 158
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=34.03 E-value=70 Score=26.27 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=39.1
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
+-.++..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 31 ~~~iL~~l~~~~-~~t~~~la~~l~~s~~~vs~~l~~Le~~--gli~r~ 76 (144)
T 1lj9_A 31 QYLYLVRVCENP-GIIQEKIAELIKVDRTTAARAIKRLEEQ--GFIYRQ 76 (144)
T ss_dssp HHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHCc-CcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 456888888765 7999999999999999999999999887 666654
No 159
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.99 E-value=52 Score=21.76 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=30.0
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHH
Q 010241 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (514)
Q Consensus 78 ~l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~ 119 (514)
+|+++.+..|+...+ ...|..+||...|++...+.+-+.
T Consensus 5 ~l~~~~~~~i~~~~~---~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL---LNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 567777777776553 347999999999999999877664
No 160
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=33.87 E-value=11 Score=32.34 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=24.0
Q ss_pred hHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 84 ~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t 44 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAA 44 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHH
Confidence 6666655 567788 79999999999997654
No 161
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.82 E-value=59 Score=27.09 Aligned_cols=47 Identities=6% Similarity=0.167 Sum_probs=39.6
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++...
T Consensus 39 ~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~~ 85 (155)
T 1s3j_A 39 QLFVLASLKKHG-SLKVSEIAERMEVKPSAVTLMADRLEQK--NLIARTH 85 (155)
T ss_dssp HHHHHHHHHHHS-EEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeecC
Confidence 456888887755 6999999999999999999999999876 7777543
No 162
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=33.69 E-value=21 Score=34.58 Aligned_cols=53 Identities=28% Similarity=0.295 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCeEeeeeccCccCCCCCCCCchhhhhHhhhcCCccccCCCCCEEEecC
Q 010241 272 RWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFP 332 (514)
Q Consensus 272 RWk~Ig~~Ir~N~GvV~AEQLAPyLD~~~~~~~EsymLpvL~rF~G~PeVse~G~IVY~FP 332 (514)
=|..+-+.+. +|-.|+.++||--+++ +.+.+..+|...+ .-+.+++|+||. ||
T Consensus 23 ~~~~llr~la-~Grpv~~~~LA~~~g~-----~~~~v~~~L~~l~-~~~~D~~G~Ivg-yp 75 (220)
T 3f2g_A 23 LLVPLLRELA-KGRPVSRTTLAGILDW-----PAERVAAVLEQAT-STEYDKDGNIIG-YG 75 (220)
T ss_dssp HHHHHHHHHT-TTSCBCHHHHHHHHTC-----CHHHHHHHHHHCT-TCEECTTSCEEE-SS
T ss_pred HHHHHHHHHh-cCCCCCHHHHHHHhCc-----CHHHHHHHHHhCC-cEEECCCCCEEE-ec
Confidence 3456667776 9999999999988875 4578899999997 578999999998 56
No 163
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=33.62 E-value=20 Score=30.15 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=24.0
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 44 (183)
T 1zk8_A 8 LTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPS 44 (183)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchH
Confidence 346666665 5556875 9999999999997654
No 164
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=33.61 E-value=20 Score=31.02 Aligned_cols=31 Identities=10% Similarity=0.223 Sum_probs=23.5
Q ss_pred hhHHHH----HHHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 83 VRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im----~ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
.|++|+ +.+.+.|| .+|+.|||..+|++...
T Consensus 8 ~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gt 43 (197)
T 2gen_A 8 RKDEILQAALACFSEHGVDATTIEMIRDRSGASIGS 43 (197)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 355555 45667898 69999999999997543
No 165
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=33.54 E-value=20 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.6
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
+..|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 46 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDA 46 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHH
Confidence 4567777765 566797 68999999999997654
No 166
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=33.51 E-value=50 Score=31.21 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhc---CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~---g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.=.|.++.++.+ +..+|+.|+|..+|++...+.+-|..|.. .|.++-+
T Consensus 12 s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~ 62 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS 62 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 345566666654 45799999999999999999999999876 5777664
No 167
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=33.49 E-value=22 Score=35.07 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=49.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe-ccCCcEEEEcCc
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV-SDEGDVLYVFPN 143 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV-se~GeIlY~FP~ 143 (514)
|-.+++-.|.+.+.+.++.+|+.|+|+++|++..-.++=|..|++ -|.|++ ++.|+-.|.=.+
T Consensus 25 L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~~~~~~~y~~t~ 88 (353)
T 4a6d_A 25 LFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVS--LKLLKVETRGGKAFYRNTE 88 (353)
T ss_dssp HHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECH
T ss_pred HHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHH--CCCEEEeccCccceeeCCH
Confidence 444556677888888888899999999999999999888888776 467765 456777887554
No 168
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=33.34 E-value=11 Score=31.93 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=25.5
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.||. +|+.|||.++|++....
T Consensus 13 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~ 51 (191)
T 4aci_A 13 TNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAI 51 (191)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHH
Confidence 3456666655 6778986 99999999999986543
No 169
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=33.29 E-value=48 Score=28.15 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCceeehhhhh-hcCCCHHHHHHHHHHHHhhcCCceE
Q 010241 85 NRAMDAVDACNRRVTIGDVAG-KAGLKLNEAQKALQALAADTDGFLE 130 (514)
Q Consensus 85 ~~im~ave~~g~rvTvgDVAa-~aGL~l~~ae~~L~aLAsd~~G~Lq 130 (514)
=.|+-.+.+.+ ..|++|+|. ..|++....-+.|..|-.+ |-++
T Consensus 19 fsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~--GlVe 62 (95)
T 1bja_A 19 ATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKK--GLVE 62 (95)
T ss_dssp HHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHC--CCee
Confidence 45678888888 999999999 9999999999999999988 8898
No 170
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=33.08 E-value=12 Score=33.89 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=25.5
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++| +.+.|| .+|+.|||.++|++....
T Consensus 17 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 55 (251)
T 3npi_A 17 EVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMI 55 (251)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHH
Confidence 3456677665 555687 799999999999976543
No 171
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=32.81 E-value=18 Score=31.97 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=24.7
Q ss_pred hhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
.|++|++| +.+.|| .+|+.|||..+|++....
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 65 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGST 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchh
Confidence 56666554 567798 799999999999976543
No 172
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=32.71 E-value=21 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.0
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.||. +|+.|||..+|++...
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~t 48 (211)
T 3bhq_A 11 ARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQT 48 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 4456666655 5567986 9999999999997654
No 173
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=32.57 E-value=22 Score=30.04 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=23.6
Q ss_pred hhHHHH----HHHHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 83 VRNRAM----DAVDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 83 ~~~~im----~ave~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
.|++|+ +.+.+.|+. +|+.|||.++|++....
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~ 44 (199)
T 3qbm_A 8 TRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGI 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHH
Confidence 345554 456677865 89999999999986544
No 174
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=32.50 E-value=22 Score=30.78 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.||. +|+.|||..+|++...
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 50 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGS 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchh
Confidence 456666655 5567986 8999999999997644
No 175
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=32.44 E-value=49 Score=27.13 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+..+|+.|+|...|++...+.+.|..|... |.++..
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~--glv~r~ 85 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ--GLVRRL 85 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCeeec
Confidence 345788888445678999999999999999999999999865 666654
No 176
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=32.31 E-value=2e+02 Score=24.32 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=39.1
Q ss_pred HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 87 im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
|+..+... +..|+.|+|...|++...+.+.|..|..+ |-++... |.-+|+=+.
T Consensus 45 i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~--Glv~r~~-~~~~~lT~~ 97 (155)
T 2h09_A 45 ISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRLATM--GLIEMIP-WRGVFLTAE 97 (155)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TCEEEET-TTEEEECHH
T ss_pred HHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHC--CCEEEec-CCceEEChh
Confidence 33355544 56899999999999999999999999887 6776554 334555444
No 177
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.18 E-value=21 Score=31.55 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.0
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 80 ~~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
....|++|++| +.+.||. +|+.|||.++|++....
T Consensus 33 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tl 72 (221)
T 3g7r_A 33 PSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATL 72 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 34567777665 5667875 99999999999986554
No 178
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=32.16 E-value=22 Score=31.68 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=25.1
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~----ave~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++ .+.+.||. +|+.|||.++|++....
T Consensus 39 ~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tl 76 (214)
T 2guh_A 39 QSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLI 76 (214)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHH
Confidence 45556655 46778986 99999999999987544
No 179
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=32.01 E-value=22 Score=29.78 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=25.0
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~a 114 (514)
..|++|++ .+.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASI 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHH
Confidence 45666655 4667887 599999999999987554
No 180
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=31.55 E-value=24 Score=30.78 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=22.7
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCH
Q 010241 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 82 ~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l 111 (514)
..|++|++ .+.+.|+ .+|+.|||..+|++.
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~ 62 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPK 62 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTT
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCc
Confidence 44566655 5667787 499999999999954
No 181
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=31.52 E-value=32 Score=31.52 Aligned_cols=60 Identities=13% Similarity=0.234 Sum_probs=47.8
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE-e-ccCCcEEEE
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE-V-SDEGDVLYV 140 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq-V-se~GeIlY~ 140 (514)
++.+.-+++++-|-+.|.-+|+.-|+.+-.++...|+++|..|.+. |.+. | -.+.-.||.
T Consensus 45 fDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~k--GlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 45 IEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADR--KLVEKVAKNGNQWVYS 106 (143)
T ss_dssp CCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHT--TSEEEEEEETTEEEEE
T ss_pred ecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHC--CCEEEEecCCCeEEEe
Confidence 3466677888888888889999999999999999999999999876 4443 3 335666775
No 182
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=31.23 E-value=15 Score=34.94 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.2
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHH
Q 010241 93 ACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (514)
Q Consensus 93 ~~g~rvTvgDVAa~aGL~l~~ae~~L~ 119 (514)
....++|+.|||..+|+|..++-++|.
T Consensus 6 ~~~~~~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 6 DTKRPLTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp ----CCCHHHHHHHHCCCSHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHCCCHHHHHHHHc
Confidence 345689999999999999999988773
No 183
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.17 E-value=21 Score=32.06 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHhcCCceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~t 45 (213)
T 2g7g_A 11 LDRERIAEAALELVDRDG-DFRMPDLARHLNVQVSS 45 (213)
T ss_dssp CCHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhH
Confidence 345666655 55669 99999999999997653
No 184
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=30.85 E-value=23 Score=32.09 Aligned_cols=63 Identities=24% Similarity=0.170 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCeEeeeeccCccCCCCCCCCchhhhhHhhhcCCcccc-CCCCCEEEecCcc
Q 010241 270 EKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEI-DEEGNILYRFPSF 334 (514)
Q Consensus 270 erRWk~Ig~~Ir~N~GvV~AEQLAPyLD~~~~~~~EsymLpvL~rF~G~PeV-se~G~IVY~FPeL 334 (514)
++|++.|-++|++|+- ++-+||+-.|....-.-.++-+-.-|.+. |...| +++|.-+|..|+=
T Consensus 4 ~~R~~~I~~li~~~~~-~tq~eL~~~L~~~G~~VtqaTisRDL~eL-~~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 4 GQRHIKIREIIMSNDI-ETQDELVDRLREAGFNVTQATVSRDIKEM-QLVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp CHHHHHHHHHHHHSCC-CSHHHHHHHHHHTTCCCCHHHHHHHHHHT-TCEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHHHHHCCC-ccHHHHHHHHHHcCCCcCHHHHHHHHHHc-CCeEEECCCCCEEEEeCCC
Confidence 4699999999987764 99999999994322224667777777776 56666 5789999999853
No 185
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=30.81 E-value=24 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 9 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgt 45 (215)
T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGA 45 (215)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchh
Confidence 456666554 566898 79999999999997643
No 186
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.75 E-value=21 Score=31.02 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=24.0
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~----ave~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++ .+.+.||. +|+.|||.++|++...
T Consensus 9 ~tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gt 45 (203)
T 2np5_A 9 TSPERLAAALFDVAAESGLEGASVREVAKRAGVSIGA 45 (203)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHH
Confidence 34566655 45678986 9999999999997643
No 187
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=30.74 E-value=24 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.6
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~ 112 (514)
...|++|++| +.+.||. +|+.|||..+|++..
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskg 45 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQG 45 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCch
Confidence 4556777665 5568985 999999999999754
No 188
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=30.16 E-value=27 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=25.5
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~ 80 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSV 80 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhH
Confidence 456677665 5566886 99999999999987654
No 189
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=30.02 E-value=24 Score=31.52 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=24.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 13 ~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t 49 (231)
T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPL 49 (231)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 345666554 567898 79999999999997543
No 190
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=29.95 E-value=58 Score=30.96 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhc---CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc-CcchH---HHHhhhhHH
Q 010241 83 VRNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF-PNNYR---AKLAAKSFR 155 (514)
Q Consensus 83 ~~~~im~ave~~---g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F-P~~fR---s~l~~Ks~r 155 (514)
.=.|.++.++-+ +..+|+.|+|..+|++...+-+-|..|.. .|.++-. +| -|.- |+-++ ..+.+..+.
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~-~~--~Y~Lg~~~~~lg~~~~~~~~l~ 93 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD-GS--AFWLTPRVLELGYSYLSSLSLP 93 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES-SS--EEEECGGGGGTTHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec-CC--EEEEcHHHHHHHHHHHhcCCHH
Confidence 345666666655 46799999999999999999999998876 4677664 23 4554 33222 222233444
Q ss_pred HhHHHHHHHH
Q 010241 156 LKVEPVIDKA 165 (514)
Q Consensus 156 ~rl~~~~~k~ 165 (514)
...++.++.+
T Consensus 94 ~~a~p~l~~L 103 (265)
T 2ia2_A 94 EVAQPHLEKL 103 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 191
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=29.83 E-value=22 Score=33.62 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.7
Q ss_pred ceeehhhhhhcCCCHHHHHHHHHH
Q 010241 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (514)
Q Consensus 97 rvTvgDVAa~aGL~l~~ae~~L~a 120 (514)
++|+.|||..+|+|..++-+.|..
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 589999999999999999888863
No 192
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=29.81 E-value=15 Score=30.95 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.|+. +|+.|||..+|++....
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 51 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGI 51 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHH
Confidence 345666555 5566885 99999999999987654
No 193
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=29.79 E-value=2e+02 Score=26.86 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHHHHhhhhHHHhHHHH
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPV 161 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~fRs~l~~Ks~r~rl~~~ 161 (514)
+.+.+|++-+. -+-+|+.+||-..|||=.+|+-.|..|+-| |-+.-=+-|...|.==. .+. +..++..+
T Consensus 11 erk~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE--G~V~~Vk~GK~ayw~L~------~s~-y~~kV~di 79 (165)
T 2vxz_A 11 VRLRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKE--GRVTRVAFGNVALVCLS------MDQ-YRQLVDGM 79 (165)
T ss_dssp HHHHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEESC------HHH-HHHHHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhc--CceEEEEEccEEEEEec------HHH-HHHHHHHH
Confidence 35677888887 889999999999999999999999888765 44554567888887542 122 22266666
Q ss_pred HHHHhhh
Q 010241 162 IDKAKAA 168 (514)
Q Consensus 162 ~~k~w~v 168 (514)
++-+|..
T Consensus 80 lrel~~~ 86 (165)
T 2vxz_A 80 IREVERL 86 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766665
No 194
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=29.77 E-value=41 Score=33.04 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
..+-.|.+++...++..|+.|+|+++|++..-.++=|.+|++ -|.|+.+ .| .|.-..
T Consensus 35 a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~~-~~--~y~~t~ 91 (363)
T 3dp7_A 35 MLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILLE-ED--RYVLAK 91 (363)
T ss_dssp HHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE-TT--EEEECH
T ss_pred HHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEec-CC--EEeccc
Confidence 344456778877677899999999999999999998888886 4788764 22 355544
No 195
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.70 E-value=2.2e+02 Score=23.12 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=50.9
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc-CCcEE
Q 010241 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGDVL 138 (514)
Q Consensus 76 ~~~l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse-~GeIl 138 (514)
.+.|...+.+.-+..+.+.=-++|+..+|..-||+.+++|+-|..+-.+..=+=..+. +|-|.
T Consensus 9 ~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~ 72 (84)
T 1ufm_A 9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 72 (84)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEE
Confidence 4567777888888899998889999999999999999999999999887654444454 44443
No 196
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=29.61 E-value=62 Score=26.37 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 37 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~~vs~~l~~Le~~--glv~r~ 83 (142)
T 2fbi_A 37 QQWRVIRILRQQG-EMESYQLANQACILRPSMTGVLARLERD--GIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEee
Confidence 3456888888866 4999999999999999999999999876 666543
No 197
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.60 E-value=67 Score=26.35 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...| .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~~la~~l~~s~~tvs~~l~~L~~~--glv~r~ 80 (145)
T 2a61_A 34 AQFDILQKIYFEG-PKRPGELSVLLGVAKSTVTGLVKRLEAD--GYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 3467888888754 6999999999999999999999999886 777654
No 198
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=29.44 E-value=24 Score=30.58 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=23.1
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l 111 (514)
..|++|++| +.+.|| .+|+.|||..+|++.
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk 45 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTR 45 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCCh
Confidence 456667655 556787 599999999999964
No 199
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=29.40 E-value=36 Score=26.80 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=26.5
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHH
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae 115 (514)
+|. +.+|..++++.| .|+.++|.++|++.....
T Consensus 8 ~~~-~~ri~~~l~~~g--lT~~~LA~~~Gvs~stls 40 (74)
T 1neq_A 8 DWH-RADVIAGLKKRK--LSLSALSRQFGYAPTTLA 40 (74)
T ss_dssp SCC-HHHHHHHHHTTS--CCHHHHHHHHSSCHHHHH
T ss_pred CCC-HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHH
Confidence 343 688888888654 899999999999877664
No 200
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=29.35 E-value=1.1e+02 Score=31.51 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHH
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~fRs 147 (514)
.++++.+..+-+-=-++|+.++|...|++.+++|..|..+-.|--=+=..+....+|+....+-|.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~ 366 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD 366 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh
Confidence 333444333334456899999999999999999999999999874333567766788888765444
No 201
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.24 E-value=2.5e+02 Score=23.40 Aligned_cols=47 Identities=11% Similarity=0.076 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.||..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 45 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALFG-PKKMKEIAEFLSTTKSNVTNVVDSLEKR--GLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 4567899998876 6999999999999999999999999886 666654
No 202
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=29.08 E-value=15 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=24.1
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 40 (189)
T 3geu_A 3 AMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASL 40 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 345566555 5566876 99999999999986543
No 203
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=29.01 E-value=2.7e+02 Score=23.78 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.6
Q ss_pred CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchH
Q 010241 95 NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (514)
Q Consensus 95 g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~fR 146 (514)
|-++ |..++|.+-|+|.+.++++|..|.++ |-++... |-=.|+=+.+..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~~--Gli~~~~-g~G~~V~~~~~~ 74 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVEA--GILYKKR-GIGMFVSAQAPA 74 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT--TSEEEET-TTEEEECTTHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEec-CCEEEEecCchH
Confidence 4455 88999999999999999999999876 6676543 344566555433
No 204
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.86 E-value=24 Score=31.34 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|+. +|+.|||..+|++...
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 76 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTT 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHH
Confidence 456666654 5667986 9999999999997654
No 205
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=28.78 E-value=20 Score=32.36 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.5
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
.+.|++|++|. .+.|| .+|+.|||.++|++...
T Consensus 42 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~t 79 (255)
T 3g1o_A 42 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT 79 (255)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHH
Confidence 45667776665 45688 89999999999997654
No 206
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=28.74 E-value=15 Score=30.89 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=24.3
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
+.|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPATL 45 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHH
Confidence 345666655 4556875 99999999999986543
No 207
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=28.74 E-value=56 Score=27.10 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.++..+...+. +|+.|+|...|++...+-+.|..|..+ |.++...
T Consensus 32 ~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~~ 79 (145)
T 3g3z_A 32 NLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQ--GLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEECC
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeecc
Confidence 44678889988775 999999999999999999999999775 7777543
No 208
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=28.62 E-value=77 Score=31.21 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
+.+.+|++.+. .+..+|+.|+|.+.|+|...+.+.|..|.. .|.+..+..|. =|....
T Consensus 5 ~r~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~--~G~~i~~~~g~-GY~l~~ 62 (321)
T 1bia_A 5 TVPLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTLRD--WGVDVFTVPGK-GYSLPE 62 (321)
T ss_dssp HHHHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCCCEEETTT-EEECSS
T ss_pred hHHHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCcEEEecCC-CcEEee
Confidence 44567788884 577899999999999999999999999976 45555555555 466643
No 209
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=28.56 E-value=1.1e+02 Score=25.56 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
.|-+++...+ ..|+.+++..+|++-.++-.|+==||.+ +.+++.++...+|+...
T Consensus 12 ~VW~~L~~~~-~~s~~el~k~t~l~d~el~lAIGWLaRE--dKI~~~~~~~~l~v~L~ 66 (82)
T 2l02_A 12 KVWHALNEAD-GISIPELARKVNLSVESTALAVGWLARE--NKVVIERKNGLIEIYNE 66 (82)
T ss_dssp HHHHHHHHCC-SBCHHHHHHHHTCCHHHHHHHHHHHHTT--TSEEEEEETTEEEEEEG
T ss_pred HHHHHHhccC-CCCHHHHHHHhCCCHHHHHHHHHHHhcc--CceeEEeeCCEEEEEEc
Confidence 4667788866 8999999999999999999999888875 78998888888888643
No 210
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=28.56 E-value=29 Score=29.92 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=23.6
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCH
Q 010241 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 82 ~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l 111 (514)
..|++|++ .+.+.|| .+|+.|||..+|++.
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~ 48 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSK 48 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCc
Confidence 45677766 5667897 599999999999964
No 211
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=28.39 E-value=27 Score=30.14 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=23.9
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|.+|++| +.+.|| .+|+.|||..+|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 47 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQAN 47 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHH
Confidence 345666554 556786 69999999999997654
No 212
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=28.38 E-value=66 Score=26.44 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=40.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|... |-++...
T Consensus 38 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~~ 85 (142)
T 2bv6_A 38 PQFLVLTILWDES-PVNVKKVVTELALDTGTVSPLLKRMEQV--DLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHSS-EEEHHHHHHHTTCCTTTHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEeec
Confidence 4557888888765 6999999999999999999999999887 7777544
No 213
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=28.26 E-value=15 Score=31.19 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|+. +|+.|||.++|++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 56 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGT 56 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhH
Confidence 446667665 5566986 9999999999997654
No 214
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=28.21 E-value=22 Score=32.04 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=24.1
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~av----e~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++|. .+.|+. +|+.|||.++|++...
T Consensus 25 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 61 (211)
T 3fiw_A 25 MNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPS 61 (211)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred cCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 3456666654 556987 9999999999997644
No 215
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=28.08 E-value=45 Score=36.45 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred chhhHHHHHHHHhcCCceeehhhhhhcC-------CCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 010241 81 ADVRNRAMDAVDACNRRVTIGDVAGKAG-------LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (514)
Q Consensus 81 ~~~~~~im~ave~~g~rvTvgDVAa~aG-------L~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~f 145 (514)
.....+|++.++. .+.||+.++|..-| .+..-|+..|..+ ...|.|=++++.+=+|-||.-|
T Consensus 493 ~~~~~~il~l~~~-~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~--e~eG~l~rDd~~~G~~yypNlf 561 (566)
T 1w7p_D 493 DVVKEKLVDLIGD-NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNC--VDEGDLLIDKQLSGIYYYKNSY 561 (566)
T ss_dssp HHHHHHHHHHHTT-STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHH--HHTTSEEEEEETTEEEEEECCS
T ss_pred hHHHHHHHHHHHh-cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHH--HHcCCEEEECCCCceEEehhhc
Confidence 4677888888876 67899999999999 9999999999874 4468888887666688888544
No 216
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=28.06 E-value=28 Score=29.98 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=23.6
Q ss_pred hhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 83 ~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
.|++|++| +.+.||. +|+.|||..+|++...
T Consensus 11 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gt 46 (194)
T 2nx4_A 11 RRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGA 46 (194)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 45666555 5678985 9999999999997643
No 217
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=27.92 E-value=75 Score=26.72 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.|+..+... ..+|+.|+|...|++...+.+.|..|... |-++...
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~--glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLER--GFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC--
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeeec
Confidence 345688888874 57999999999999999999999999887 7777543
No 218
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=27.91 E-value=30 Score=30.11 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=24.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.||. +|+.|||..+|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGA 47 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 3456777665 5667985 9999999999997643
No 219
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=27.88 E-value=1.6e+02 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.4
Q ss_pred hhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 010241 83 VRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (514)
Q Consensus 83 ~~~~im~ave~~----g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP 142 (514)
+-..|.+.+... |.++ |..++|.+-|+|.+.++++|..|.++ |-|+... |-=.|+=+
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~~-g~G~~V~~ 79 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA--GYIYAKR-GMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CeEEEec-CCEEEEec
Confidence 334445555533 4455 68999999999999999999999886 6666443 33345544
No 220
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=27.79 E-value=1e+02 Score=25.58 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCceeehhhhhhcCC-CHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGL-KLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL-~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP 142 (514)
.|-+++... ...|+.+++..+|+ +-.++-.|+==||.+ +.+++.+.+..+|++.
T Consensus 14 ~VW~~L~~~-~~~s~~el~k~t~l~~d~el~lAiGWLaRE--dKI~~~~~~~~l~v~l 68 (77)
T 2l01_A 14 QIWEALNGT-EGLTQKQIKKATKLKADKDFFLGLGWLLRE--DKVVTSEVEGEIFVKL 68 (77)
T ss_dssp HHHHHHTTS-SCEEHHHHHHHHTCSCHHHHHHHHHHHHHT--TCEEEEEETTEEEEEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCCCCHHHHHHHHHHHhhc--CceEEEeeCCEEEEEe
Confidence 355666665 58999999999999 999999999888875 7999999999999874
No 221
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=27.79 E-value=28 Score=30.55 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
+.|++|++| +.+.||. +|+.|||.++|++....
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tl 59 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTL 59 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 346666554 5678985 89999999999976543
No 222
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=27.77 E-value=25 Score=31.72 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=23.8
Q ss_pred hhhHHHHHH----HHhc-CC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDAC-NR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~-g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+. |+ .+|+.|||.++|++...
T Consensus 5 ~tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~t 42 (220)
T 1z0x_A 5 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPA 42 (220)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHH
T ss_pred chHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHH
Confidence 346666655 4556 88 69999999999997654
No 223
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=27.64 E-value=28 Score=30.07 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=23.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~ 112 (514)
..|++|++| +.+.|| .+|+.|||..+|++..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~ 47 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTRG 47 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHH
Confidence 345556554 567897 6999999999999653
No 224
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=27.53 E-value=88 Score=25.47 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--gli~r~ 81 (138)
T 1jgs_A 35 AQFKVLCSIRCAA-CITPVELKKVLSVDLGALTRMLDRLVCK--GWVERL 81 (138)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHCCChHHHHHHHHHHHHC--CCEEec
Confidence 3456788887755 5899999999999999999999999876 777653
No 225
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=27.52 E-value=1.9e+02 Score=27.48 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=40.2
Q ss_pred hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY 139 (514)
.+.+...++..+..++..+++..+|++.++.++.|..|.+. +.-+.+..+++..|
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~-~~~~~~~~~~~~~~ 58 (258)
T 1lva_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAA-GQVTLLRVENDLYA 58 (258)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhC-CCEEEeccCCccEE
Confidence 35567778888888877999999999999999888888754 33555544344334
No 226
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=27.51 E-value=27 Score=31.55 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.3
Q ss_pred chhhHHHHHHH----HhcCC-ceeehhhhhhcCCCH
Q 010241 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~-rvTvgDVAa~aGL~l 111 (514)
...|++|++|. .+.|| .+|+.|||..+|++.
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~ 80 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCCh
Confidence 34566666654 55597 799999999999964
No 227
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=27.42 E-value=38 Score=27.24 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=31.8
Q ss_pred HHHHHHHHhcC---------CceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010241 85 NRAMDAVDACN---------RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (514)
Q Consensus 85 ~~im~ave~~g---------~rvTvgDVAa~aGL~l~~ae~~L~aLAsd 124 (514)
|++.+.+.+.| +..|+.|+|..-|+++++.-++|.++.+.
T Consensus 17 P~~~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp GGGHHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 44555555544 57899999999999999999999987753
No 228
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=27.17 E-value=25 Score=31.25 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=23.0
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCC
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLK 110 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~ 110 (514)
...|++|++| +.+.|| .+|+.|||..+|++
T Consensus 34 ~~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs 68 (237)
T 3kkd_A 34 EQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVP 68 (237)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCC
Confidence 3456777665 457797 79999999999995
No 229
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=27.07 E-value=29 Score=26.92 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.3
Q ss_pred eeehhhhhhcCCCHHHHHHHH
Q 010241 98 VTIGDVAGKAGLKLNEAQKAL 118 (514)
Q Consensus 98 vTvgDVAa~aGL~l~~ae~~L 118 (514)
+|+.|||..+|++...+-+.|
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 588999999999999987766
No 230
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=27.04 E-value=63 Score=27.86 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=39.1
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV 131 (514)
.+-.|+..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 46 ~~~~iL~~L~~~~-~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r 91 (168)
T 2nyx_A 46 PQFRTLVILSNHG-PINLATLATLLGVQPSATGRMVDRLVGA--ELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 3457888888766 7999999999999999999999999876 67764
No 231
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=26.64 E-value=17 Score=30.77 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=24.5
Q ss_pred hhhHHHHH----HHHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~----ave~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
..|++|++ .+.+.||. +|+.|||..+|++....
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tl 44 (186)
T 2jj7_A 7 QTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMA 44 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhh
Confidence 34555655 45567886 99999999999987654
No 232
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=26.60 E-value=23 Score=29.60 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=36.7
Q ss_pred hHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 84 RNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 84 ~~~im~ave~~g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
+..|+..+ +-|.++ |..++|.+-|+|...++++|..|.++ |-++...
T Consensus 30 ~~~I~~~l-~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~--GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEEL-DGNEGLLVASKIADRVGITRSVIVNALRKLESA--GVIESRS 77 (102)
T ss_dssp HHHHTTSS-BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHhhh-cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEe
Confidence 55555222 346666 99999999999999999999999886 6677665
No 233
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.60 E-value=1.1e+02 Score=26.16 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=46.2
Q ss_pred CchhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceE-ec-cCCcEEEEc
Q 010241 80 PADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLE-VS-DEGDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g-~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~Lq-Vs-e~GeIlY~F 141 (514)
....|..|++++.+.+ .-+|+.||.... ++++..+=+.|..|... |-++ +. ++|...|..
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~--Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA--GLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--TSEEEECSSSSSCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC--CcEEEEEeCCCceEEEe
Confidence 3457788999999887 789999999876 89999999999999875 3343 33 356777875
No 234
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.56 E-value=1.3e+02 Score=26.37 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=47.0
Q ss_pred CchhhHHHHHHHHhcCCceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 010241 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F 141 (514)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|...-==+=-..++|...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3556788999999988899999999766 8999999999999887532221123467777875
No 235
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=26.51 E-value=30 Score=31.00 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=24.5
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 7 ~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~t 43 (235)
T 2fbq_A 7 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLAA 43 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 456667655 566798 69999999999997643
No 236
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=26.34 E-value=31 Score=30.09 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.2
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (219)
T 2w53_A 11 ATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGA 47 (219)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 346667665 556787 59999999999997643
No 237
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=26.30 E-value=77 Score=26.42 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV 131 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++.
T Consensus 42 ~~~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTP-GISVADLTKRLIITGSSAAANVDGLISL--GLVVK 87 (154)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4457888888875 5999999999999999999999999874 77776
No 238
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=26.25 E-value=30 Score=31.21 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.9
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 59 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKSA 59 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHH
Confidence 3456666665 556787 69999999999997643
No 239
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=26.20 E-value=62 Score=26.25 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~ 80 (139)
T 3bja_A 34 VQFGVIQVLAKSG-KVSMSKLIENMGCVPSNMTTMIQRMKRD--GYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHCSSCCTTHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhHHHHHHHHHHHC--CCeeec
Confidence 4457888887755 6999999999999999999999999887 777653
No 240
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.88 E-value=29 Score=30.14 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.4
Q ss_pred hhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.||. +|+.|||..+|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~t 48 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSG 48 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHH
Confidence 456677655 5568875 8999999999997654
No 241
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=25.67 E-value=75 Score=25.82 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+... +.+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~--glv~~~ 76 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEES--GFIERE 76 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 445678888875 67999999999999999999999999876 667653
No 242
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=25.60 E-value=1.3e+02 Score=28.14 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=35.2
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc-CCc
Q 010241 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD-EGD 136 (514)
Q Consensus 93 ~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse-~Ge 136 (514)
+-|.+++..++|.+-|+|...++++|..|.++ |-+++.. .|-
T Consensus 45 ~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~--Glv~~~~~~G~ 87 (237)
T 3c7j_A 45 PSGTALRQQELATLFGVSRMPVREALRQLEAQ--SLLRVETHKGA 87 (237)
T ss_dssp CTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEETTTEE
T ss_pred CCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCce
Confidence 46889999999999999999999999999765 7777664 443
No 243
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=25.49 E-value=30 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=24.8
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.||. +|+.|||..+|++...
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 51 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKES 51 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHH
Confidence 3456667655 5667874 9999999999997654
No 244
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.39 E-value=34 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 85 NRAMDAVDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 85 ~~im~ave~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
+.+++.+.+.||. +|+.|||..+|++....
T Consensus 18 ~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tl 48 (202)
T 2i10_A 18 QTAMELFWRQGYEGTSITDLTKALGINPPSL 48 (202)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCChHHH
Confidence 3335556778986 88999999999976543
No 245
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=25.30 E-value=61 Score=29.82 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec---cCCc
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGD 136 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs---e~Ge 136 (514)
..+.+|+..+. .++.|+.|+|...|++...+.+-|..|..+ |-++.. ..|+
T Consensus 20 ~~~~~IL~~L~--~~~~s~~eLA~~lglS~stv~~~l~~Le~~--GlI~~~~~~~~~~ 73 (192)
T 1uly_A 20 DTRRKILKLLR--NKEMTISQLSEILGKTPQTIYHHIEKLKEA--GLVEVKRTEMKGN 73 (192)
T ss_dssp HHHHHHHHHHT--TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEEEETT
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccccc
Confidence 45678999997 368999999999999999999999999654 667654 4555
No 246
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=25.26 E-value=33 Score=29.73 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=22.8
Q ss_pred hhhHHHHHHHH-----hcCC-ceeehhhhhhcCCCH
Q 010241 82 DVRNRAMDAVD-----ACNR-RVTIGDVAGKAGLKL 111 (514)
Q Consensus 82 ~~~~~im~ave-----~~g~-rvTvgDVAa~aGL~l 111 (514)
..|++|++|.. +.|+ .+|+.|||.++|++.
T Consensus 11 ~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~ 46 (220)
T 3lsj_A 11 QTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVP 46 (220)
T ss_dssp HHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCCh
Confidence 45667766654 5665 799999999999964
No 247
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=24.97 E-value=90 Score=31.48 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=49.0
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC-cEEEEcCcchHH
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNYRA 147 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G-eIlY~FP~~fRs 147 (514)
++.....++++.+.+. ..+|+.+++...|++-..|++.|..|... |.|+-...| .-+|.+++-++-
T Consensus 294 ~~~~~~~~ll~~l~~~-p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~~~~ 360 (373)
T 2qc0_A 294 LPKIYSHELVQVIFEQ-PYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVTL 360 (373)
T ss_dssp CTTTCCHHHHHHHHHC-SEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHHH
T ss_pred ccchhHHHHHHHHHhC-CcccHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEEecCCCceEEehHHHHHH
Confidence 3444456788888764 56899999999999999999999999864 777765544 367887765543
No 248
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.94 E-value=18 Score=31.54 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=4.4
Q ss_pred hhHHHHHHHHhcCCc-eeehhhhhhcCCCHH
Q 010241 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLN 112 (514)
Q Consensus 83 ~~~~im~ave~~g~r-vTvgDVAa~aGL~l~ 112 (514)
+-+..++.+.+.||. +|+.|||.++|++..
T Consensus 35 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~ 65 (212)
T 2np3_A 35 ILTAARVCFAERGFDATSLRRIAETAGVDQS 65 (212)
T ss_dssp CHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHcCCCHH
Confidence 334445556677886 999999999999653
No 249
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=24.85 E-value=53 Score=27.62 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+..+|+.|+|...|++...+-+.|..|... |-++..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~--Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD--GMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEee
Confidence 345688888656678999999999999999999999999876 777754
No 250
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=24.51 E-value=19 Score=30.67 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=25.0
Q ss_pred hhhHHHHHHH----HhcCCc-eeehhhhhhcCCCHHHH
Q 010241 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 82 ~~~~~im~av----e~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
+.|++|++|. .+.||. +|+.|||.++|++....
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tl 55 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNL 55 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHH
Confidence 4567777654 577875 99999999999976543
No 251
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=24.41 E-value=31 Score=32.80 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.6
Q ss_pred eeehhhhhhcCCCHHHHHHHHH
Q 010241 98 VTIGDVAGKAGLKLNEAQKALQ 119 (514)
Q Consensus 98 vTvgDVAa~aGL~l~~ae~~L~ 119 (514)
+|+.|||..+|+|..++-+.|.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5899999999999999999987
No 252
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=24.39 E-value=20 Score=30.39 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=24.0
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t 47 (204)
T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGS 47 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHH
Confidence 456666555 556787 58999999999997654
No 253
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=24.25 E-value=65 Score=25.62 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHHHHHhcC-------C--ceeehhhhhhcCCCHHHHHHHHHHHHhhcCC
Q 010241 85 NRAMDAVDACN-------R--RVTIGDVAGKAGLKLNEAQKALQALAADTDG 127 (514)
Q Consensus 85 ~~im~ave~~g-------~--rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G 127 (514)
|++.+.+.+.| . ..|+.++|...|+++++.-++|.+.+.+..-
T Consensus 19 P~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~~~ 70 (73)
T 2k5e_A 19 PGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEHHH 70 (73)
T ss_dssp THHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55666666655 3 5899999999999999999999998887643
No 254
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=24.14 E-value=1e+02 Score=28.34 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=37.2
Q ss_pred cCCceeehhhhhhcC--CCHHHHHHHHHHHHhhc---CCceEeccCCcEEEEc
Q 010241 94 CNRRVTIGDVAGKAG--LKLNEAQKALQALAADT---DGFLEVSDEGDVLYVF 141 (514)
Q Consensus 94 ~g~rvTvgDVAa~aG--L~l~~ae~~L~aLAsd~---~G~LqVse~GeIlY~F 141 (514)
.+..+|+.++|...| ++.+++++.|..|..++ +.-+++-+.|+- |.|
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~g-y~l 70 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGG-YRF 70 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTE-EEE
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCE-EEE
Confidence 467799999999999 99999999999999988 445666554442 444
No 255
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=23.69 E-value=37 Score=30.10 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.7
Q ss_pred hhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 14 ~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~t 50 (208)
T 3v6g_A 14 GRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGS 50 (208)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchh
Confidence 456777665 567798 58999999999997654
No 256
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=23.47 E-value=91 Score=26.26 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=39.5
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 53 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r~ 99 (162)
T 3cjn_A 53 AKMRALAILSAKD-GLPIGTLGIFAVVEQSTLSRALDGLQAD--GLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEec
Confidence 4567888888765 6999999999999999999999999876 777654
No 257
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=23.44 E-value=69 Score=21.60 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=26.2
Q ss_pred CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHH
Q 010241 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKAL 118 (514)
Q Consensus 79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L 118 (514)
+.++....|++.++ .| .|+.+||...|++.....+-|
T Consensus 6 ~~~~~~~~i~~l~~-~g--~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 6 INKHEQEQISRLLE-KG--HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp SCTTHHHHHHHHHH-TT--CCHHHHHHTTSCCHHHHHHHS
T ss_pred CCHHHHHHHHHHHH-cC--CCHHHHHHHHCCCHHHHHHHH
Confidence 44444556666554 33 899999999999988876544
No 258
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=23.39 E-value=49 Score=31.71 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=42.3
Q ss_pred CCCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc
Q 010241 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD 136 (514)
Q Consensus 78 ~l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~Ge 136 (514)
-|-...+-.|.+++.+ +..|+.|+|+++|++....++=|..|++ -|.++-.+.|.
T Consensus 21 ~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~~~~~ 75 (332)
T 3i53_A 21 AVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRDGQGV 75 (332)
T ss_dssp HHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECTTSB
T ss_pred HHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEecCCCe
Confidence 3444555667788864 4799999999999999999999999987 67777655553
No 259
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=23.26 E-value=17 Score=34.52 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=0.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHH
Q 010241 96 RRVTIGDVAGKAGLKLNEAQKALQ 119 (514)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~ae~~L~ 119 (514)
.++|+.|||..+|+|..++-++|.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Confidence 479999999999999999988885
No 260
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.09 E-value=39 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=24.9
Q ss_pred chhhHHHHHHH----HhcCCceeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~av----e~~g~rvTvgDVAa~aGL~l~~a 114 (514)
...|++|++|. .+.|..+|+.|||..+|++....
T Consensus 19 ~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tl 56 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQV 56 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHH
Confidence 34667776654 45568999999999999976543
No 261
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=23.07 E-value=96 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=39.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.|+..+...+ .+|+.|+|...|++...+.+.|..|..+ |.++..
T Consensus 48 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 94 (153)
T 2pex_A 48 PQYLVMLVLWETD-ERSVSEIGERLYLDSATLTPLLKRLQAA--GLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 4557888888754 6999999999999999999999999876 666643
No 262
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=23.05 E-value=1.1e+02 Score=29.44 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=43.3
Q ss_pred CCchhhHHHHHHHHh-cCCceeehhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeccCCc
Q 010241 79 LPADVRNRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGD 136 (514)
Q Consensus 79 l~~~~~~~im~ave~-~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~---~G~LqVse~Ge 136 (514)
+++.--+++++|+-= .|.-+|+.++|...|++..++++.|..|..+| +.-+++-+.|+
T Consensus 11 ~~~~~l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~ 72 (219)
T 2z99_A 11 LDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSE 72 (219)
T ss_dssp CCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 444444555555543 57779999999999999999999999999988 34566655443
No 263
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=23.05 E-value=54 Score=27.14 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs 132 (514)
.+-.++..+...| .+|++|+|...|++...+-+.|..|..+ |-++-.
T Consensus 38 ~~~~vL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r~ 84 (142)
T 3ech_A 38 PDVHVLKLIDEQR-GLNLQDLGRQMCRDKALITRKIRELEGR--NLVRRE 84 (142)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHC---CHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEeec
Confidence 3456788888876 6999999999999999999999999875 666643
No 264
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.96 E-value=70 Score=30.58 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=45.7
Q ss_pred CCcccccCCCCchhhHHHHHHHHhcCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 010241 70 PGRIVESDKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (514)
Q Consensus 70 ~~~~~~~~~l~~~~~~~im~ave~~g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~ 134 (514)
||=.+.-+.-......+|.+.+++.|+.. ++.|++...|++-.+++ .++..+.+.|--.+|+++
T Consensus 129 ~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~-~~l~~l~~~g~lv~l~~~ 193 (258)
T 1lva_A 129 AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELE-ELLHYLVREGVLVKINDE 193 (258)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHH-HHHHHHHHTTSEEESSSS
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHH-HHHHHHHHCCCEEEecCC
Confidence 44334444444556778888888889877 89999999999999985 555555666666777653
No 265
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=22.92 E-value=40 Score=30.72 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=25.7
Q ss_pred chhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
...+++|++| +.+.||. +|+.|||..+|++....
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~ 85 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTV 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHH
Confidence 3456667665 5567985 99999999999987654
No 266
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=22.76 E-value=18 Score=34.30 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceeehhhhhhcCCCHHHHHHHHHH
Q 010241 96 RRVTIGDVAGKAGLKLNEAQKALQA 120 (514)
Q Consensus 96 ~rvTvgDVAa~aGL~l~~ae~~L~a 120 (514)
.++|+.|||..+|+|..++-+.|..
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 4799999999999999999998875
No 267
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=22.75 E-value=2.1e+02 Score=24.27 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 010241 95 NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (514)
Q Consensus 95 g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP 142 (514)
|.++ |..++|..-|+|...++++|..|.++ |.++.. .|-=.|+=+
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~Al~~L~~~--Gli~~~-~g~G~~V~~ 77 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAKAYKELEAQ--KVIRTI-PGKGTFITG 77 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECS
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe-cCCeEEEcc
Confidence 5567 99999999999999999999999875 566543 233355555
No 268
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=22.68 E-value=57 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=24.4
Q ss_pred hhhHHHH----HHHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im----~ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|+ +.+.+.|+ .+|+.|||..+|++...
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t 43 (213)
T 3ni7_A 7 PMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDE 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 3455554 55778896 69999999999997654
No 269
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=22.39 E-value=3.2e+02 Score=22.25 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 010241 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (514)
Q Consensus 86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G 135 (514)
.|++++. ..++..++|..+||+...+.+.|..|-. .|-++...+|
T Consensus 12 ~IL~~i~---~~~~~t~La~~~~ls~~~~~~~l~~L~~--~GLI~~~~~~ 56 (95)
T 1r7j_A 12 AILEACK---SGSPKTRIMYGANLSYALTGRYIKMLMD--LEIIRQEGKQ 56 (95)
T ss_dssp HHHHHHT---TCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEETTE
T ss_pred HHHHHHH---cCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEECCe
Confidence 3455554 3399999999999999999999999976 4566665443
No 270
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=22.32 E-value=18 Score=39.04 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G 135 (514)
..++.||+.+++.| .+|-.||+..+|++..+|.+.|..|..+ |.|+-...|
T Consensus 516 ~~~~~I~~~l~~~g-~it~~di~~l~~ls~~qa~~~L~~Lv~~--G~l~~~G~g 566 (583)
T 3lmm_A 516 ELTNAAMLWLSEVG-DLATSDLMAMCGVSRGTAKACVDGLVDE--ERVVAVGGG 566 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEeCCC
Confidence 34567889988865 4999999999999999999999999876 667655444
No 271
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=22.18 E-value=36 Score=34.22 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHH
Q 010241 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (514)
Q Consensus 85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aL 121 (514)
..|++.+.+....+|+.|++..||+..+++-.+|+.|
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 5566766666679999999999999999999999887
No 272
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=22.04 E-value=91 Score=26.46 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.++..+...| .+|+.|+|...|++...+-+.|..|..+ |.++...
T Consensus 54 ~q~~vL~~l~~~~-~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r~~ 101 (161)
T 3e6m_A 54 PKLRLLSSLSAYG-ELTVGQLATLGVMEQSTTSRTVDQLVDE--GLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEECC
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEeeC
Confidence 3557888888776 8999999999999999999999999875 7777543
No 273
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=21.88 E-value=49 Score=27.57 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhc----CCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 83 VRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 83 ~~~~im~ave~~----g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
+-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-|+... |-=.|+=+.
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~--Gli~~~~-~~G~~V~~~ 76 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDD--NVIEKRR-GLGMLVKAG 76 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEec-CCeEEEeCC
Confidence 444555555543 4455 88999999999999999999999886 6676443 333455544
No 274
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.87 E-value=23 Score=31.08 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=23.7
Q ss_pred hhhHHHHH----HHHhcCC-ceeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~----ave~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
..|++|++ .+.+.|| .+|+.|||..+|++...
T Consensus 3 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgt 39 (208)
T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGL 39 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 34556655 4567787 59999999999997543
No 275
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=21.83 E-value=96 Score=25.55 Aligned_cols=48 Identities=6% Similarity=0.072 Sum_probs=40.0
Q ss_pred hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 010241 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (514)
Q Consensus 83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse 133 (514)
.+-.++..+... +.+|+.|+|...|++...+-+.|..|..+ |.++-..
T Consensus 38 ~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r~~ 85 (143)
T 3oop_A 38 EQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRK--ELIVREI 85 (143)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEC
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHC--CCeeccC
Confidence 445678888776 67999999999999999999999999875 7777543
No 276
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.76 E-value=19 Score=34.58 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCceeehhhhhhcCCCHHHHHHHHHH
Q 010241 95 NRRVTIGDVAGKAGLKLNEAQKALQA 120 (514)
Q Consensus 95 g~rvTvgDVAa~aGL~l~~ae~~L~a 120 (514)
..++|+.|||..+|+|..++-++|..
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34689999999999999999998875
No 277
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=21.73 E-value=27 Score=30.61 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=22.3
Q ss_pred hhhHHHHHHHH----hcCCc-eeehhhhhhcCCCHHH
Q 010241 82 DVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKLNE 113 (514)
Q Consensus 82 ~~~~~im~ave----~~g~r-vTvgDVAa~aGL~l~~ 113 (514)
..|++|++|.. +.||. +|+.|||..+|++...
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgt 60 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGS 60 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCch
Confidence 55778877755 45875 8999999999997654
No 278
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.61 E-value=46 Score=29.67 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=26.6
Q ss_pred CchhhHHHHHH----HHhcCCc-eeehhhhhhcCCCHHHH
Q 010241 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (514)
Q Consensus 80 ~~~~~~~im~a----ve~~g~r-vTvgDVAa~aGL~l~~a 114 (514)
....|++|++| +.+.|+. +|+.|||.++|++....
T Consensus 14 ~~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~ 53 (216)
T 2oi8_A 14 RTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPAL 53 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHH
Confidence 44567777655 5566875 99999999999987654
No 279
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=21.48 E-value=50 Score=28.26 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.4
Q ss_pred cCCce-eehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010241 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (514)
Q Consensus 94 ~g~rv-TvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV 131 (514)
-|-++ |..++|..-|+|.+.+++||..|.++ |-++.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~e--Glv~~ 70 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELERQ--EVIIT 70 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE
Confidence 46677 78899999999999999999999875 56653
No 280
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.39 E-value=30 Score=27.00 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=18.7
Q ss_pred ceeehhhhhhcCCCHHHHHHHH
Q 010241 97 RVTIGDVAGKAGLKLNEAQKAL 118 (514)
Q Consensus 97 rvTvgDVAa~aGL~l~~ae~~L 118 (514)
.+|+.|||..+|++...+-+.|
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5899999999999998885544
No 281
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=21.28 E-value=22 Score=31.20 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 010241 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (514)
Q Consensus 82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq 130 (514)
..+.+|++ .-+.|.++|..++|.+.|+|...+.++|..|.++ |-++
T Consensus 13 ~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~--Gli~ 58 (163)
T 2gqq_A 13 RIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ--GFIQ 58 (163)
T ss_dssp SHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH--TSEE
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEE
Confidence 45678888 4556888999999999999999999999999765 4454
No 282
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=21.20 E-value=20 Score=34.83 Aligned_cols=46 Identities=15% Similarity=0.430 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhcC--Cceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCce
Q 010241 82 DVRNRAMDAVDACN--RRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFL 129 (514)
Q Consensus 82 ~~~~~im~ave~~g--~rvTvgDVAa~a-GL~l~~ae~~L~aLAsd~~G~L 129 (514)
..+.+|++.++... ..+.+-||+++. |++.++.+++|..|.++ ||+
T Consensus 207 ~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e--G~I 255 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE--GHI 255 (270)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC--CEE
Confidence 46788999999875 789999999988 79999999999999877 655
No 283
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.19 E-value=1.5e+02 Score=26.00 Aligned_cols=60 Identities=10% Similarity=0.247 Sum_probs=46.9
Q ss_pred CchhhHHHHHHHHhcC-Cceeehhhhhhc-----CCCHHHHHHHHHHHHhhcCCceE-ec-cCCcEEEEc
Q 010241 80 PADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLE-VS-DEGDVLYVF 141 (514)
Q Consensus 80 ~~~~~~~im~ave~~g-~rvTvgDVAa~a-----GL~l~~ae~~L~aLAsd~~G~Lq-Vs-e~GeIlY~F 141 (514)
....|..|++++.+.+ .-+|+.||.... ++++.++=+.|..|... |-++ +. ++|...|..
T Consensus 15 ~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~--Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 15 VTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA--GIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp CCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT--TSEEEEECGGGCEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC--CcEEEEEeCCCceEEEe
Confidence 3557888999998887 789999999766 89999999999999865 3443 22 357778875
No 284
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.16 E-value=20 Score=34.37 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=0.0
Q ss_pred hcCCceeehhhhhhcCCCHHHHHHHHH
Q 010241 93 ACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (514)
Q Consensus 93 ~~g~rvTvgDVAa~aGL~l~~ae~~L~ 119 (514)
....++|+.|||..+|+|..++-++|.
T Consensus 8 ~g~~~~ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ---------------------------
T ss_pred CCCCCCcHHHHHHHhCCCHHHHHHHHC
Confidence 345679999999999999999998886
No 285
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.78 E-value=19 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhc-----CCeEeeeeccCccCCC
Q 010241 271 KRWKLIGEYIASN-----GGVVTAEELAPYLDID 299 (514)
Q Consensus 271 rRWk~Ig~~Ir~N-----~GvV~AEQLAPyLD~~ 299 (514)
.|.+.|.++|+.+ ||.++.+|||--++..
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS 37 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLS 37 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCC
Confidence 4778999999988 9999999999999974
No 286
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=20.60 E-value=27 Score=30.91 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=23.8
Q ss_pred chhhHHHHHH----HHhcCC-ceeehhhhhhcCCCHHH
Q 010241 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (514)
Q Consensus 81 ~~~~~~im~a----ve~~g~-rvTvgDVAa~aGL~l~~ 113 (514)
...|++|++| +.+.|| .+|+.|||..+|++...
T Consensus 29 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 66 (226)
T 2pz9_A 29 DSTRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKER 66 (226)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHH
Confidence 3456666655 455687 49999999999997643
No 287
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=20.58 E-value=3.5e+02 Score=22.14 Aligned_cols=72 Identities=13% Similarity=0.254 Sum_probs=49.9
Q ss_pred hHHHHHHHHhcCCceeehhhhhhc-CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHHHHhhhhHHHhHHHHH
Q 010241 84 RNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVI 162 (514)
Q Consensus 84 ~~~im~ave~~g~rvTvgDVAa~a-GL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~fRs~l~~Ks~r~rl~~~~ 162 (514)
+-.|+..+.....++|++|++... |++-...-+.|..|-.+ |-++-...-.+.|.-.. .++.+...++++.
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~--GlV~r~~~r~~~y~LT~------~G~~l~~~l~~l~ 100 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS--GLVERRSGQITTYALTE------KGMNVRNSLMPLL 100 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT--TSEEEEESSSEEEEECH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC--CCEEEeecCcEEEEECc------cHHHHHHHHHHHH
Confidence 567888887433446699999999 99999999999999765 66665544566676654 2344444454444
Q ss_pred H
Q 010241 163 D 163 (514)
Q Consensus 163 ~ 163 (514)
+
T Consensus 101 ~ 101 (111)
T 3df8_A 101 Q 101 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 288
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=20.54 E-value=1.5e+02 Score=28.68 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=45.0
Q ss_pred cCCCCchhhHHHHHHHHhcCCceeehhhhhhcCCC---HHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010241 76 SDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLK---LNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (514)
Q Consensus 76 ~~~l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~---l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~ 143 (514)
+--|-...+-.|.+++.+.|+..|+.|+|+++|++ ..-.++=|+.|++ -|.|+..++|+=.|.-..
T Consensus 30 ~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~y~~t~ 98 (352)
T 1fp2_A 30 SMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAH--NGFFEIITKEEESYALTV 98 (352)
T ss_dssp HHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHH--TTSEEEEESSSEEEEECH
T ss_pred HHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHh--CCeEEEecCCCCeEeCCH
Confidence 33344455566778888776789999999999995 6666677777766 677776532334565443
No 289
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.22 E-value=1.2e+02 Score=24.88 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcc
Q 010241 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (514)
Q Consensus 85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~ 144 (514)
...++.++. ..-|.+.|+|+.-||+..++-..+..|-++-.=+==+++-|.-||.=|.-
T Consensus 10 ~~Fi~yIk~-~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 10 TEFINYIKK-SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HHHHHHHHH-CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HHHHHHHHH-cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 344555554 46678889999999999999999999988764444478899999976653
Done!