Query 010244
Match_columns 514
No_of_seqs 467 out of 3973
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 22:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02898 HMP-P kinase/thiamin- 100.0 2.2E-81 4.8E-86 661.7 59.3 497 14-510 3-499 (502)
2 COG0351 ThiD Hydroxymethylpyri 100.0 5.5E-50 1.2E-54 373.8 31.5 261 18-283 1-261 (263)
3 KOG2598 Phosphomethylpyrimidin 100.0 7.6E-50 1.6E-54 384.3 23.7 444 9-468 12-472 (523)
4 PRK12616 pyridoxal kinase; Rev 100.0 4.2E-43 9E-48 342.1 31.5 263 18-283 1-265 (270)
5 COG0352 ThiE Thiamine monophos 100.0 3E-43 6.5E-48 322.3 25.2 204 301-509 5-209 (211)
6 PTZ00493 phosphomethylpyrimidi 100.0 3.7E-42 8E-47 335.4 31.0 262 19-284 3-302 (321)
7 PRK12412 pyridoxal kinase; Rev 100.0 5.3E-42 1.1E-46 334.2 32.2 259 20-282 1-261 (268)
8 TIGR00097 HMP-P_kinase phospho 100.0 5.4E-42 1.2E-46 332.0 31.0 253 23-280 1-253 (254)
9 PRK12290 thiE thiamine-phospha 100.0 4.9E-41 1.1E-45 333.9 32.2 262 231-510 133-416 (437)
10 PRK06427 bifunctional hydroxy- 100.0 6.2E-40 1.3E-44 320.3 31.8 258 19-282 3-263 (266)
11 PF08543 Phos_pyr_kin: Phospho 100.0 8.5E-41 1.8E-45 321.1 24.7 245 30-279 1-246 (246)
12 PRK06512 thiamine-phosphate py 100.0 2.5E-39 5.4E-44 302.6 25.5 203 301-510 12-216 (221)
13 cd01169 HMPP_kinase 4-amino-5- 100.0 4.9E-38 1.1E-42 302.8 30.7 241 22-264 1-241 (242)
14 PTZ00347 phosphomethylpyrimidi 100.0 5.3E-38 1.2E-42 331.9 32.2 267 14-283 224-497 (504)
15 PRK09517 multifunctional thiam 100.0 3.8E-38 8.3E-43 345.4 31.3 268 16-286 237-505 (755)
16 PRK14713 multifunctional hydro 100.0 8.8E-38 1.9E-42 331.2 29.8 263 18-284 27-291 (530)
17 PRK02615 thiamine-phosphate py 100.0 3.7E-38 8E-43 310.6 24.4 200 301-509 146-345 (347)
18 PRK03512 thiamine-phosphate py 100.0 6.9E-38 1.5E-42 291.4 24.7 195 301-508 12-208 (211)
19 PF02581 TMP-TENI: Thiamine mo 100.0 2.6E-38 5.7E-43 289.2 21.4 180 304-489 1-180 (180)
20 PRK08573 phosphomethylpyrimidi 100.0 1E-36 2.3E-41 316.6 31.6 255 20-280 2-257 (448)
21 PRK12413 phosphomethylpyrimidi 100.0 1.1E-34 2.4E-39 281.1 30.8 249 18-273 1-249 (253)
22 PRK08999 hypothetical protein; 100.0 1.8E-34 3.8E-39 288.1 22.6 183 302-490 130-312 (312)
23 TIGR00693 thiE thiamine-phosph 100.0 8.4E-34 1.8E-38 264.1 23.7 194 303-502 1-196 (196)
24 cd01173 pyridoxal_pyridoxamine 100.0 1E-33 2.2E-38 274.6 24.7 244 22-266 1-253 (254)
25 PRK08176 pdxK pyridoxal-pyrido 100.0 3E-33 6.6E-38 274.1 26.6 246 20-268 15-270 (281)
26 PRK05756 pyridoxamine kinase; 100.0 2E-33 4.3E-38 276.9 24.1 247 20-267 1-258 (286)
27 PRK07105 pyridoxamine kinase; 100.0 6.4E-33 1.4E-37 273.0 25.6 244 18-268 2-259 (284)
28 PRK07695 transcriptional regul 100.0 1.2E-32 2.7E-37 256.7 24.9 198 302-508 2-199 (201)
29 PRK09517 multifunctional thiam 100.0 2.5E-32 5.5E-37 299.6 26.3 205 302-511 4-219 (755)
30 COG2240 PdxK Pyridoxal/pyridox 100.0 4.6E-32 9.9E-37 254.5 22.8 242 21-268 1-254 (281)
31 PRK00043 thiE thiamine-phospha 100.0 1.5E-31 3.2E-36 252.3 26.2 204 301-509 6-211 (212)
32 cd00564 TMP_TenI Thiamine mono 100.0 1.8E-29 3.9E-34 235.0 24.1 194 304-503 1-195 (196)
33 TIGR00687 pyridox_kin pyridoxa 100.0 4E-29 8.7E-34 246.4 26.1 247 20-268 1-260 (286)
34 KOG2599 Pyridoxal/pyridoxine/p 100.0 2E-29 4.4E-34 230.0 19.0 246 19-268 8-267 (308)
35 PTZ00344 pyridoxal kinase; Pro 100.0 2.6E-28 5.5E-33 241.3 25.0 243 20-268 4-262 (296)
36 PLN02978 pyridoxal kinase 100.0 5.4E-28 1.2E-32 239.4 25.3 247 16-268 10-271 (308)
37 cd01171 YXKO-related B.subtili 100.0 7.4E-29 1.6E-33 240.4 17.4 228 14-266 2-237 (254)
38 PRK07455 keto-hydroxyglutarate 99.9 7.2E-27 1.6E-31 213.5 14.6 162 318-492 24-186 (187)
39 TIGR00196 yjeF_cterm yjeF C-te 99.9 3.9E-26 8.4E-31 223.2 19.1 227 6-261 10-244 (272)
40 PLN02334 ribulose-phosphate 3- 99.9 7.1E-26 1.5E-30 215.2 14.9 201 305-509 8-225 (229)
41 PRK09140 2-dehydro-3-deoxy-6-p 99.9 3.3E-24 7.2E-29 198.5 17.0 170 318-507 22-204 (206)
42 PRK10565 putative carbohydrate 99.9 9.7E-22 2.1E-26 206.2 22.9 228 4-263 238-474 (508)
43 COG0063 Predicted sugar kinase 99.9 1.7E-21 3.7E-26 187.3 19.3 232 3-261 15-257 (284)
44 PF01256 Carb_kinase: Carbohyd 99.8 2.6E-19 5.6E-24 170.1 13.5 213 23-266 1-224 (242)
45 PRK06552 keto-hydroxyglutarate 99.8 1.2E-18 2.6E-23 161.8 17.2 170 318-507 25-210 (213)
46 PRK06806 fructose-bisphosphate 99.8 8.5E-19 1.8E-23 169.5 16.2 154 321-503 87-245 (281)
47 cd00452 KDPG_aldolase KDPG and 99.8 5.5E-19 1.2E-23 163.0 14.2 153 318-490 16-175 (190)
48 TIGR00694 thiM hydroxyethylthi 99.8 7.3E-19 1.6E-23 168.9 14.7 167 84-268 46-225 (249)
49 PRK05581 ribulose-phosphate 3- 99.8 8.6E-19 1.9E-23 166.2 14.8 186 318-506 16-218 (220)
50 cd00429 RPE Ribulose-5-phospha 99.8 7.9E-19 1.7E-23 165.4 12.6 182 318-502 12-210 (211)
51 cd00405 PRAI Phosphoribosylant 99.8 2.8E-18 6.1E-23 160.2 15.7 163 321-492 9-187 (203)
52 cd01170 THZ_kinase 4-methyl-5- 99.8 1.7E-17 3.8E-22 158.6 21.4 207 19-268 7-226 (242)
53 cd01174 ribokinase Ribokinase 99.8 3.5E-17 7.5E-22 162.1 21.5 155 89-264 129-283 (292)
54 PRK11142 ribokinase; Provision 99.8 6.9E-17 1.5E-21 161.1 22.0 155 89-264 132-286 (306)
55 COG1105 FruK Fructose-1-phosph 99.7 1.5E-16 3.3E-21 153.2 21.3 171 72-264 111-286 (310)
56 PTZ00292 ribokinase; Provision 99.7 2.5E-16 5.4E-21 158.5 23.4 159 90-264 148-307 (326)
57 TIGR03828 pfkB 1-phosphofructo 99.7 1.1E-15 2.3E-20 152.3 26.5 154 89-264 127-284 (304)
58 cd01164 FruK_PfkB_like 1-phosp 99.7 1.1E-15 2.5E-20 151.1 26.5 154 89-264 128-285 (289)
59 PRK09850 pseudouridine kinase; 99.7 3.3E-16 7.2E-21 156.7 22.7 156 89-265 134-290 (313)
60 TIGR01182 eda Entner-Doudoroff 99.7 3.1E-17 6.8E-22 150.2 13.0 156 318-493 20-183 (204)
61 TIGR02152 D_ribokin_bact ribok 99.7 5.4E-16 1.2E-20 153.7 22.8 156 89-264 124-279 (293)
62 PRK07028 bifunctional hexulose 99.7 1.8E-16 4E-21 164.7 20.3 195 302-510 4-214 (430)
63 PRK09355 hydroxyethylthiazole 99.7 1.5E-16 3.2E-21 154.3 17.5 168 85-267 52-229 (263)
64 PRK09954 putative kinase; Prov 99.7 1.2E-15 2.5E-20 155.8 24.6 155 89-264 187-342 (362)
65 PRK07114 keto-hydroxyglutarate 99.7 8.9E-17 1.9E-21 149.2 14.7 159 318-492 27-194 (222)
66 cd01166 KdgK 2-keto-3-deoxyglu 99.7 2.5E-16 5.5E-21 156.1 18.3 161 89-264 124-290 (294)
67 cd01172 RfaE_like RfaE encodes 99.7 1.5E-15 3.2E-20 151.4 23.6 152 89-264 134-291 (304)
68 TIGR03168 1-PFK hexose kinase, 99.7 4.1E-15 8.8E-20 148.2 26.1 154 89-264 127-284 (303)
69 PF01081 Aldolase: KDPG and KH 99.7 1.1E-16 2.3E-21 145.7 13.1 158 318-492 20-182 (196)
70 TIGR02198 rfaE_dom_I rfaE bifu 99.7 1.8E-15 4E-20 151.5 23.0 151 89-264 143-299 (315)
71 PRK09513 fruK 1-phosphofructok 99.7 5.7E-15 1.2E-19 147.7 26.2 154 89-264 131-288 (312)
72 PLN02341 pfkB-type carbohydrat 99.7 1.2E-15 2.6E-20 160.0 21.7 161 89-264 224-390 (470)
73 PRK06015 keto-hydroxyglutarate 99.7 1.9E-16 4.1E-21 144.5 13.2 155 318-492 16-178 (201)
74 PRK13508 tagatose-6-phosphate 99.7 2E-15 4.3E-20 150.8 21.8 157 89-265 126-287 (309)
75 TIGR01231 lacC tagatose-6-phos 99.7 2.2E-15 4.9E-20 150.4 22.1 158 89-265 126-287 (309)
76 cd01941 YeiC_kinase_like YeiC- 99.7 6.4E-15 1.4E-19 145.5 25.0 156 89-263 128-287 (288)
77 PRK10294 6-phosphofructokinase 99.7 2.1E-15 4.6E-20 150.6 21.3 155 89-264 130-289 (309)
78 cd01167 bac_FRK Fructokinases 99.7 1E-15 2.3E-20 151.7 18.4 159 89-264 120-291 (295)
79 PTZ00247 adenosine kinase; Pro 99.7 1.5E-15 3.2E-20 154.0 19.8 162 89-265 159-332 (345)
80 cd01168 adenosine_kinase Adeno 99.7 1.5E-15 3.2E-20 151.9 19.4 158 89-264 145-306 (312)
81 PRK09434 aminoimidazole ribosi 99.7 4.5E-15 9.8E-20 147.9 20.3 160 89-264 119-290 (304)
82 TIGR01949 AroFGH_arch predicte 99.6 2.5E-15 5.4E-20 145.4 15.5 149 320-509 92-250 (258)
83 COG0800 Eda 2-keto-3-deoxy-6-p 99.6 2E-15 4.4E-20 136.3 12.7 159 318-491 25-186 (211)
84 PRK11316 bifunctional heptose 99.6 2.2E-14 4.7E-19 151.8 22.1 151 89-264 143-297 (473)
85 PRK05718 keto-hydroxyglutarate 99.6 2.6E-15 5.6E-20 139.1 13.0 156 318-492 27-189 (212)
86 PF00294 PfkB: pfkB family car 99.6 8.2E-15 1.8E-19 145.7 17.6 160 89-265 127-292 (301)
87 PLN02323 probable fructokinase 99.6 2.1E-14 4.6E-19 144.8 20.5 160 90-264 137-308 (330)
88 cd01945 ribokinase_group_B Rib 99.6 1E-14 2.3E-19 143.8 17.9 149 89-264 126-275 (284)
89 cd01946 ribokinase_group_C Rib 99.6 6.5E-15 1.4E-19 144.8 16.2 153 89-264 114-272 (277)
90 PRK07315 fructose-bisphosphate 99.6 6.2E-15 1.3E-19 143.6 14.7 152 321-505 89-249 (293)
91 cd00958 DhnA Class I fructose- 99.6 4E-15 8.8E-20 142.4 13.1 148 319-506 77-234 (235)
92 PLN02813 pfkB-type carbohydrat 99.6 3.3E-14 7.2E-19 147.0 19.9 159 89-264 224-388 (426)
93 TIGR01163 rpe ribulose-phospha 99.6 8.3E-15 1.8E-19 137.9 14.1 180 318-502 11-209 (210)
94 PLN02967 kinase 99.6 5.5E-14 1.2E-18 147.8 21.6 164 89-263 335-527 (581)
95 cd01944 YegV_kinase_like YegV- 99.6 3.9E-14 8.4E-19 140.1 19.6 157 89-264 125-287 (289)
96 COG2870 RfaE ADP-heptose synth 99.6 4.1E-14 8.9E-19 137.4 18.1 147 89-263 143-295 (467)
97 cd01940 Fructoselysine_kinase_ 99.6 4.3E-14 9.4E-19 137.9 18.7 148 89-264 112-260 (264)
98 COG0524 RbsK Sugar kinases, ri 99.6 7.4E-14 1.6E-18 139.6 19.7 144 101-264 144-290 (311)
99 KOG3974 Predicted sugar kinase 99.6 5.9E-14 1.3E-18 128.3 16.2 211 8-243 18-242 (306)
100 PLN02548 adenosine kinase 99.6 5.2E-14 1.1E-18 142.0 17.8 161 89-264 148-320 (332)
101 PLN02379 pfkB-type carbohydrat 99.6 7.5E-14 1.6E-18 142.1 18.4 158 89-264 177-338 (367)
102 cd00287 ribokinase_pfkB_like r 99.6 4E-14 8.7E-19 131.5 14.9 137 90-242 58-196 (196)
103 PRK13585 1-(5-phosphoribosyl)- 99.6 8.7E-14 1.9E-18 133.7 17.0 173 319-497 33-233 (241)
104 cd00331 IGPS Indole-3-glycerol 99.6 1E-13 2.2E-18 131.0 15.9 174 318-502 31-217 (217)
105 cd01937 ribokinase_group_D Rib 99.6 5.1E-14 1.1E-18 136.5 14.3 147 89-262 107-253 (254)
106 cd01943 MAK32 MAK32 kinase. M 99.5 1.5E-13 3.2E-18 138.2 17.4 161 89-264 120-301 (328)
107 cd04726 KGPDC_HPS 3-Keto-L-gul 99.5 3.8E-13 8.2E-18 125.8 19.1 186 303-501 2-201 (202)
108 cd01942 ribokinase_group_A Rib 99.5 2.3E-13 5E-18 133.8 17.8 146 89-264 126-275 (279)
109 PRK15074 inosine/guanosine kin 99.5 1.1E-13 2.4E-18 142.3 15.8 157 89-265 186-412 (434)
110 TIGR01859 fruc_bis_ald_ fructo 99.5 1E-13 2.3E-18 134.6 14.4 141 321-490 87-234 (282)
111 PLN02543 pfkB-type carbohydrat 99.5 4.6E-13 1E-17 139.5 19.7 163 89-263 266-469 (496)
112 PRK07226 fructose-bisphosphate 99.5 4.3E-13 9.3E-18 130.4 16.2 152 319-509 94-254 (267)
113 cd01947 Guanosine_kinase_like 99.5 3.6E-13 7.9E-18 131.4 15.2 141 89-264 121-261 (265)
114 PRK09813 fructoselysine 6-kina 99.5 1.9E-12 4.2E-17 125.9 19.6 144 89-264 113-256 (260)
115 TIGR03128 RuMP_HxlA 3-hexulose 99.5 3.9E-12 8.4E-17 119.3 19.1 177 318-505 12-205 (206)
116 PRK08883 ribulose-phosphate 3- 99.5 1.5E-12 3.2E-17 122.0 14.9 187 319-508 13-217 (220)
117 cd01939 Ketohexokinase Ketohex 99.4 7.2E-12 1.6E-16 124.0 19.0 151 89-264 127-286 (290)
118 PRK00278 trpC indole-3-glycero 99.4 3.6E-12 7.7E-17 123.0 16.1 172 318-504 70-258 (260)
119 cd04730 NPD_like 2-Nitropropan 99.4 6.8E-12 1.5E-16 120.2 17.6 166 322-494 17-193 (236)
120 PRK01130 N-acetylmannosamine-6 99.4 3.2E-11 7E-16 114.2 19.0 175 318-506 23-219 (221)
121 PLN02630 pfkB-type carbohydrat 99.4 1.3E-11 2.8E-16 123.7 15.2 147 90-264 123-274 (335)
122 KOG2855 Ribokinase [Carbohydra 99.3 8.2E-12 1.8E-16 120.6 12.7 157 89-263 139-306 (330)
123 cd04727 pdxS PdxS is a subunit 99.3 6.7E-11 1.4E-15 111.6 17.9 181 324-509 21-248 (283)
124 cd04729 NanE N-acetylmannosami 99.3 3.7E-11 8E-16 113.6 15.7 166 318-497 27-217 (219)
125 TIGR00078 nadC nicotinate-nucl 99.3 9.3E-12 2E-16 119.8 11.6 103 364-492 151-255 (265)
126 PF04131 NanE: Putative N-acet 99.3 7E-11 1.5E-15 104.9 14.4 168 322-508 3-192 (192)
127 PRK04180 pyridoxal biosynthesi 99.3 5.2E-11 1.1E-15 112.7 14.2 145 360-509 72-257 (293)
128 COG2145 ThiM Hydroxyethylthiaz 99.3 2.4E-10 5.1E-15 106.1 18.0 169 84-268 52-232 (265)
129 PRK08745 ribulose-phosphate 3- 99.3 9.7E-11 2.1E-15 109.6 15.3 199 306-508 5-221 (223)
130 PRK06801 hypothetical protein; 99.3 1.1E-10 2.5E-15 113.1 15.8 146 321-490 87-237 (286)
131 KOG2854 Possible pfkB family c 99.3 4.2E-11 9.1E-16 114.3 12.5 162 89-265 159-332 (343)
132 TIGR00343 pyridoxal 5'-phospha 99.3 9.1E-11 2E-15 110.7 14.3 151 354-509 59-251 (287)
133 COG3010 NanE Putative N-acetyl 99.3 7.9E-10 1.7E-14 98.3 18.9 181 308-508 25-228 (229)
134 COG0036 Rpe Pentose-5-phosphat 99.2 3.2E-10 7E-15 103.5 15.6 199 305-507 4-218 (220)
135 cd01572 QPRTase Quinolinate ph 99.2 7.6E-11 1.6E-15 113.8 12.3 90 388-492 169-260 (268)
136 PF02110 HK: Hydroxyethylthiaz 99.2 1.3E-10 2.8E-15 109.5 12.7 164 89-268 51-225 (246)
137 PRK08005 epimerase; Validated 99.2 6.6E-10 1.4E-14 102.7 14.4 183 318-503 13-208 (210)
138 PRK08091 ribulose-phosphate 3- 99.2 6.6E-10 1.4E-14 103.7 14.2 198 303-506 11-227 (228)
139 PTZ00170 D-ribulose-5-phosphat 99.2 4.8E-10 1E-14 106.1 13.5 199 307-509 9-224 (228)
140 KOG3111 D-ribulose-5-phosphate 99.2 1.3E-09 2.9E-14 95.6 14.9 190 318-510 17-221 (224)
141 PRK08185 hypothetical protein; 99.1 1.7E-09 3.7E-14 104.5 15.9 141 321-490 81-232 (283)
142 cd04722 TIM_phosphate_binding 99.1 4.1E-10 8.8E-15 104.3 11.2 165 319-487 13-200 (200)
143 cd01568 QPRTase_NadC Quinolina 99.1 3.5E-10 7.6E-15 109.6 10.9 87 389-491 169-259 (269)
144 PRK08072 nicotinate-nucleotide 99.1 4.1E-10 9E-15 108.6 10.8 87 390-491 177-265 (277)
145 PRK14057 epimerase; Provisiona 99.1 2E-09 4.3E-14 101.6 14.4 199 304-508 19-243 (254)
146 COG0269 SgbH 3-hexulose-6-phos 99.1 2.4E-08 5.3E-13 90.6 18.9 194 302-509 4-215 (217)
147 cd01573 modD_like ModD; Quinol 99.0 4.9E-10 1.1E-14 108.4 8.4 88 391-491 174-262 (272)
148 PRK09722 allulose-6-phosphate 99.0 4.6E-09 1E-13 98.4 13.8 198 307-509 5-222 (229)
149 PRK13307 bifunctional formalde 99.0 3.9E-08 8.5E-13 99.2 18.8 191 301-507 172-379 (391)
150 PRK13111 trpA tryptophan synth 99.0 6.3E-08 1.4E-12 93.0 19.2 180 302-491 14-233 (258)
151 PRK05742 nicotinate-nucleotide 99.0 7.3E-09 1.6E-13 99.9 12.4 86 391-492 180-267 (277)
152 cd04731 HisF The cyclase subun 98.8 2.2E-07 4.9E-12 89.3 18.6 174 318-497 27-234 (243)
153 PRK07428 nicotinate-nucleotide 98.8 1.6E-08 3.5E-13 98.0 10.6 88 391-493 186-278 (288)
154 CHL00200 trpA tryptophan synth 98.8 6.4E-07 1.4E-11 86.2 20.6 200 302-508 17-256 (263)
155 TIGR03151 enACPred_II putative 98.8 1.4E-07 3E-12 93.4 16.0 164 322-493 26-197 (307)
156 cd04728 ThiG Thiazole synthase 98.8 1.4E-07 3.1E-12 87.6 14.8 104 399-510 121-228 (248)
157 PRK02083 imidazole glycerol ph 98.8 5.6E-07 1.2E-11 87.1 19.4 174 318-497 30-238 (253)
158 TIGR00262 trpA tryptophan synt 98.8 4.4E-07 9.5E-12 87.4 18.4 195 302-506 12-252 (256)
159 PRK08227 autoinducer 2 aldolas 98.8 1.9E-07 4.2E-12 89.2 15.7 147 319-509 95-249 (264)
160 cd04724 Tryptophan_synthase_al 98.8 4.9E-07 1.1E-11 86.6 18.6 170 318-491 14-220 (242)
161 PRK00208 thiG thiazole synthas 98.8 1.7E-07 3.8E-12 87.1 14.5 106 397-510 119-228 (250)
162 PF00834 Ribul_P_3_epim: Ribul 98.8 1.1E-08 2.5E-13 94.3 6.2 172 318-492 12-200 (201)
163 cd04732 HisA HisA. Phosphorib 98.8 4.7E-07 1E-11 86.6 17.5 166 319-493 30-226 (234)
164 COG1830 FbaB DhnA-type fructos 98.7 2.1E-07 4.5E-12 87.4 14.1 153 318-508 97-259 (265)
165 TIGR03572 WbuZ glycosyl amidat 98.7 5.2E-07 1.1E-11 86.1 17.3 165 319-489 31-230 (232)
166 PRK04302 triosephosphate isome 98.7 4.3E-07 9.3E-12 86.0 14.0 132 371-505 78-221 (223)
167 PRK06852 aldolase; Validated 98.7 7.4E-07 1.6E-11 86.7 15.3 155 321-509 118-290 (304)
168 PRK00748 1-(5-phosphoribosyl)- 98.6 1.7E-06 3.6E-11 82.7 16.9 165 319-492 31-226 (233)
169 PRK13125 trpA tryptophan synth 98.6 3.1E-06 6.7E-11 81.3 18.3 180 302-491 6-219 (244)
170 PLN02591 tryptophan synthase 98.6 9.1E-06 2E-10 77.6 21.1 169 318-491 16-223 (250)
171 TIGR00735 hisF imidazoleglycer 98.6 4.7E-06 1E-10 80.6 19.1 169 319-493 31-236 (254)
172 PF00218 IGPS: Indole-3-glycer 98.5 2.9E-06 6.4E-11 80.9 15.6 172 319-502 69-254 (254)
173 PRK13957 indole-3-glycerol-pho 98.5 1.2E-05 2.6E-10 76.0 18.0 168 319-502 62-246 (247)
174 PRK01033 imidazole glycerol ph 98.4 1.4E-05 3.1E-10 77.3 16.9 168 319-492 31-232 (258)
175 TIGR00007 phosphoribosylformim 98.4 1.4E-05 3.1E-10 76.1 16.6 168 319-492 29-224 (230)
176 PF03437 BtpA: BtpA family; I 98.4 4.2E-05 9.1E-10 72.8 19.4 176 322-507 33-253 (254)
177 PRK06843 inosine 5-monophospha 98.4 1.5E-05 3.2E-10 80.9 16.7 120 370-492 157-291 (404)
178 PF03060 NMO: Nitronate monoox 98.4 4.4E-06 9.6E-11 83.9 13.0 118 371-493 106-226 (330)
179 PRK14024 phosphoribosyl isomer 98.4 2.6E-05 5.7E-10 74.7 17.5 171 320-497 34-233 (241)
180 cd04743 NPD_PKS 2-Nitropropane 98.4 1.2E-05 2.7E-10 78.9 15.3 160 322-493 18-209 (320)
181 TIGR00259 thylakoid_BtpA membr 98.3 8E-05 1.7E-09 70.9 20.0 175 324-508 34-254 (257)
182 COG0134 TrpC Indole-3-glycerol 98.3 1.7E-05 3.6E-10 74.8 14.4 169 320-503 68-253 (254)
183 PRK05458 guanosine 5'-monophos 98.3 1.9E-05 4.2E-10 78.0 15.6 130 319-492 97-236 (326)
184 PF00290 Trp_syntA: Tryptophan 98.3 3.2E-05 6.8E-10 74.1 16.4 190 318-511 24-256 (259)
185 cd00381 IMPDH IMPDH: The catal 98.3 1.4E-05 3E-10 79.9 14.6 131 319-493 94-233 (325)
186 PRK13587 1-(5-phosphoribosyl)- 98.3 5.8E-05 1.3E-09 71.8 17.6 165 321-491 34-226 (234)
187 PLN02274 inosine-5'-monophosph 98.3 9.5E-06 2.1E-10 85.5 13.1 120 370-492 252-386 (505)
188 PRK09250 fructose-bisphosphate 98.3 1.8E-05 4E-10 77.7 13.8 150 320-496 148-328 (348)
189 PRK13802 bifunctional indole-3 98.2 3.3E-05 7.2E-10 83.7 17.0 174 319-507 71-261 (695)
190 cd02803 OYE_like_FMN_family Ol 98.2 3.1E-05 6.8E-10 77.9 15.2 104 393-499 200-324 (327)
191 cd04723 HisA_HisF Phosphoribos 98.2 8.5E-05 1.9E-09 70.8 17.2 168 318-493 35-225 (233)
192 COG0106 HisA Phosphoribosylfor 98.2 0.00027 5.7E-09 66.0 18.8 177 318-501 31-237 (241)
193 PLN02460 indole-3-glycerol-pho 98.1 7.5E-05 1.6E-09 73.5 14.8 170 319-503 140-334 (338)
194 COG2070 Dioxygenases related t 98.1 5.9E-05 1.3E-09 75.4 14.1 168 320-493 27-220 (336)
195 PRK14114 1-(5-phosphoribosyl)- 98.1 0.00039 8.4E-09 66.3 18.1 163 319-492 31-229 (241)
196 PRK07807 inosine 5-monophospha 98.0 7.3E-05 1.6E-09 78.3 14.0 97 393-493 261-366 (479)
197 KOG2947 Carbohydrate kinase [C 98.0 9.5E-05 2.1E-09 68.0 12.4 147 89-260 132-291 (308)
198 PRK05848 nicotinate-nucleotide 98.0 4.3E-05 9.4E-10 73.8 10.7 86 392-492 173-263 (273)
199 PRK13306 ulaD 3-keto-L-gulonat 98.0 0.00031 6.7E-09 66.0 15.9 191 302-508 4-213 (216)
200 cd02810 DHOD_DHPD_FMN Dihydroo 98.0 0.00014 2.9E-09 72.0 13.9 79 413-494 181-281 (289)
201 cd02809 alpha_hydroxyacid_oxid 98.0 0.00012 2.7E-09 72.5 13.6 81 406-491 178-261 (299)
202 TIGR01302 IMP_dehydrog inosine 98.0 9.2E-05 2E-09 77.5 13.1 119 371-493 229-363 (450)
203 PRK09427 bifunctional indole-3 97.9 0.00025 5.4E-09 73.6 15.6 169 319-504 71-256 (454)
204 cd04742 NPD_FabD 2-Nitropropan 97.9 0.00043 9.3E-09 70.6 16.9 78 410-492 165-254 (418)
205 cd04735 OYE_like_4_FMN Old yel 97.9 0.0001 2.3E-09 74.7 12.6 82 415-499 242-326 (353)
206 TIGR01305 GMP_reduct_1 guanosi 97.9 0.00056 1.2E-08 67.0 16.8 164 321-492 59-247 (343)
207 PRK04169 geranylgeranylglycery 97.9 0.00038 8.3E-09 65.5 15.2 174 322-505 23-230 (232)
208 cd04740 DHOD_1B_like Dihydroor 97.9 0.0002 4.3E-09 71.0 14.2 49 442-493 218-267 (296)
209 KOG3009 Predicted carbohydrate 97.9 0.00023 5E-09 71.1 14.0 159 89-264 425-600 (614)
210 PRK01222 N-(5'-phosphoribosyl) 97.9 0.0014 3.1E-08 61.2 18.8 161 323-492 15-189 (210)
211 PRK11840 bifunctional sulfur c 97.9 0.00031 6.6E-09 68.6 14.6 106 399-510 195-302 (326)
212 CHL00162 thiG thiamin biosynth 97.9 0.00047 1E-08 64.4 14.8 106 397-510 133-242 (267)
213 COG0159 TrpA Tryptophan syntha 97.9 0.0011 2.3E-08 63.1 17.5 168 318-491 31-238 (265)
214 PRK05096 guanosine 5'-monophos 97.9 0.00079 1.7E-08 66.0 16.4 162 321-493 60-249 (346)
215 PRK08649 inosine 5-monophospha 97.8 0.00024 5.2E-09 71.9 13.2 83 406-492 193-291 (368)
216 PLN02446 (5-phosphoribosyl)-5- 97.8 0.0011 2.4E-08 63.3 17.0 163 319-491 44-245 (262)
217 PF01729 QRPTase_C: Quinolinat 97.8 0.00011 2.5E-09 65.8 9.6 86 392-492 71-161 (169)
218 PF00977 His_biosynth: Histidi 97.8 0.00017 3.8E-09 68.5 11.3 167 319-491 30-225 (229)
219 PRK00230 orotidine 5'-phosphat 97.8 0.0012 2.5E-08 62.8 16.9 120 371-508 73-229 (230)
220 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 0.00054 1.2E-08 71.8 15.7 132 318-493 224-364 (475)
221 PRK07259 dihydroorotate dehydr 97.8 0.00042 9E-09 68.9 14.2 50 441-493 220-270 (301)
222 cd02933 OYE_like_FMN Old yello 97.8 0.00063 1.4E-08 68.5 15.3 78 415-498 248-326 (338)
223 COG0434 SgcQ Predicted TIM-bar 97.8 0.0041 8.8E-08 57.4 18.7 175 325-509 41-260 (263)
224 TIGR01037 pyrD_sub1_fam dihydr 97.8 0.00094 2E-08 66.3 16.3 90 414-509 175-283 (300)
225 PRK05567 inosine 5'-monophosph 97.8 0.00047 1E-08 73.1 14.8 88 403-493 272-367 (486)
226 PRK07565 dihydroorotate dehydr 97.8 0.00091 2E-08 67.4 16.2 79 411-492 179-274 (334)
227 PTZ00314 inosine-5'-monophosph 97.7 0.00021 4.6E-09 75.4 11.4 117 373-493 248-380 (495)
228 COG0135 TrpF Phosphoribosylant 97.7 0.0029 6.3E-08 58.4 17.4 165 322-492 13-189 (208)
229 TIGR01306 GMP_reduct_2 guanosi 97.7 0.0014 3E-08 64.7 15.6 162 322-493 49-234 (321)
230 TIGR02814 pfaD_fam PfaD family 97.7 0.0018 4E-08 66.5 16.7 77 410-492 170-259 (444)
231 PRK13813 orotidine 5'-phosphat 97.7 0.0013 2.7E-08 62.0 14.6 122 372-508 74-214 (215)
232 PF01791 DeoC: DeoC/LacD famil 97.7 9E-05 1.9E-09 70.9 6.8 140 321-492 79-236 (236)
233 TIGR02129 hisA_euk phosphoribo 97.6 0.0024 5.3E-08 60.7 15.8 159 321-491 41-237 (253)
234 PF05690 ThiG: Thiazole biosyn 97.6 0.00044 9.5E-09 63.9 10.3 103 400-510 122-228 (247)
235 TIGR01304 IMP_DH_rel_2 IMP deh 97.6 0.00058 1.3E-08 68.9 12.1 155 319-492 120-290 (369)
236 PF04481 DUF561: Protein of un 97.6 0.0032 6.9E-08 57.3 15.3 171 318-505 27-233 (242)
237 PLN02617 imidazole glycerol ph 97.6 0.0053 1.1E-07 65.3 19.6 178 318-501 267-527 (538)
238 COG0214 SNZ1 Pyridoxine biosyn 97.6 0.00045 9.7E-09 63.1 9.8 124 372-508 93-259 (296)
239 PRK06559 nicotinate-nucleotide 97.6 0.00046 1E-08 66.9 10.5 84 392-490 188-273 (290)
240 cd04739 DHOD_like Dihydroorota 97.6 0.003 6.4E-08 63.4 16.6 96 410-508 176-290 (325)
241 cd02932 OYE_YqiM_FMN Old yello 97.6 0.002 4.3E-08 65.1 15.5 101 393-496 213-330 (336)
242 PRK06106 nicotinate-nucleotide 97.6 0.00047 1E-08 66.7 10.3 83 393-490 186-270 (281)
243 TIGR00736 nifR3_rel_arch TIM-b 97.6 0.0013 2.7E-08 62.1 12.6 73 411-491 151-225 (231)
244 PRK04128 1-(5-phosphoribosyl)- 97.5 0.0028 6E-08 60.1 14.9 161 319-493 31-218 (228)
245 PRK05437 isopentenyl pyrophosp 97.5 0.0033 7E-08 63.7 16.2 81 409-492 198-296 (352)
246 TIGR01919 hisA-trpF 1-(5-phosp 97.5 0.0062 1.4E-07 58.3 17.3 162 322-492 35-231 (243)
247 PRK13586 1-(5-phosphoribosyl)- 97.5 0.0095 2.1E-07 56.6 18.0 162 320-491 32-223 (232)
248 KOG2335 tRNA-dihydrouridine sy 97.5 0.0019 4.2E-08 63.4 13.3 171 333-509 74-266 (358)
249 PF00478 IMPDH: IMP dehydrogen 97.5 0.00089 1.9E-08 66.8 11.1 165 322-493 52-247 (352)
250 PRK06543 nicotinate-nucleotide 97.5 0.00078 1.7E-08 65.2 10.3 85 392-491 184-270 (281)
251 cd04736 MDH_FMN Mandelate dehy 97.5 0.0011 2.3E-08 66.7 11.7 112 391-508 228-346 (361)
252 cd02801 DUS_like_FMN Dihydrour 97.5 0.00094 2E-08 63.6 10.9 78 414-496 144-223 (231)
253 cd02931 ER_like_FMN Enoate red 97.5 0.0035 7.6E-08 64.3 15.7 80 415-497 259-346 (382)
254 cd02811 IDI-2_FMN Isopentenyl- 97.5 0.0035 7.6E-08 62.8 15.3 80 409-491 190-289 (326)
255 PRK08385 nicotinate-nucleotide 97.4 0.00075 1.6E-08 65.4 9.6 85 392-492 174-265 (278)
256 cd02922 FCB2_FMN Flavocytochro 97.4 0.0017 3.8E-08 65.2 12.3 94 392-491 206-305 (344)
257 TIGR00737 nifR3_yhdG putative 97.4 0.0029 6.4E-08 63.3 13.8 77 414-495 153-231 (319)
258 cd04733 OYE_like_2_FMN Old yel 97.4 0.0045 9.8E-08 62.5 15.2 103 393-498 208-334 (338)
259 COG0157 NadC Nicotinate-nucleo 97.4 0.0024 5.2E-08 60.8 11.8 84 391-489 178-265 (280)
260 cd00945 Aldolase_Class_I Class 97.4 0.0041 8.8E-08 57.5 13.4 151 318-486 13-201 (201)
261 PRK07107 inosine 5-monophospha 97.4 0.0019 4.2E-08 68.2 12.2 99 391-492 274-387 (502)
262 PRK13958 N-(5'-phosphoribosyl) 97.4 0.016 3.5E-07 54.0 17.1 161 322-491 12-187 (207)
263 PRK06978 nicotinate-nucleotide 97.4 0.0014 3.1E-08 63.5 10.3 84 393-492 198-283 (294)
264 COG2022 ThiG Uncharacterized e 97.3 0.0099 2.1E-07 54.7 14.7 106 398-509 127-234 (262)
265 PLN02363 phosphoribosylanthran 97.3 0.016 3.4E-07 55.8 17.0 162 322-492 58-234 (256)
266 PLN02716 nicotinate-nucleotide 97.3 0.0021 4.5E-08 62.8 11.1 86 399-490 201-294 (308)
267 PRK06096 molybdenum transport 97.3 0.0015 3.2E-08 63.5 10.0 83 393-492 182-269 (284)
268 PRK13305 sgbH 3-keto-L-gulonat 97.3 0.0036 7.8E-08 58.6 12.2 192 302-510 4-215 (218)
269 PRK07896 nicotinate-nucleotide 97.3 0.0015 3.3E-08 63.5 9.9 84 393-492 192-280 (289)
270 cd02930 DCR_FMN 2,4-dienoyl-Co 97.3 0.012 2.7E-07 59.7 17.1 102 392-496 195-316 (353)
271 PRK09016 quinolinate phosphori 97.3 0.0019 4E-08 62.9 10.1 75 401-490 208-284 (296)
272 PLN02535 glycolate oxidase 97.3 0.0022 4.8E-08 64.6 10.9 93 393-491 217-312 (364)
273 COG0107 HisF Imidazoleglycerol 97.3 0.012 2.7E-07 54.1 14.5 169 319-493 31-236 (256)
274 cd02812 PcrB_like PcrB_like pr 97.2 0.0046 1E-07 57.7 11.8 159 324-492 17-210 (219)
275 cd04747 OYE_like_5_FMN Old yel 97.2 0.0087 1.9E-07 60.7 14.6 82 410-496 233-338 (361)
276 PRK05286 dihydroorotate dehydr 97.2 0.0017 3.7E-08 65.6 9.5 90 414-509 231-339 (344)
277 PRK12858 tagatose 1,6-diphosph 97.2 0.0046 9.9E-08 61.9 12.4 143 324-492 112-282 (340)
278 KOG1606 Stationary phase-induc 97.2 0.0033 7.1E-08 56.6 10.1 52 455-509 207-261 (296)
279 TIGR01768 GGGP-family geranylg 97.2 0.0083 1.8E-07 56.1 13.2 167 318-492 14-214 (223)
280 cd04737 LOX_like_FMN L-Lactate 97.2 0.0028 6E-08 63.8 10.8 93 393-491 215-310 (351)
281 KOG4201 Anthranilate synthase 97.2 0.0023 5.1E-08 57.8 9.0 123 373-503 154-283 (289)
282 PRK10415 tRNA-dihydrouridine s 97.2 0.0016 3.4E-08 65.2 9.0 75 414-493 155-231 (321)
283 cd03332 LMO_FMN L-Lactate 2-mo 97.2 0.0032 7E-08 63.9 11.2 92 393-490 247-341 (383)
284 cd04734 OYE_like_3_FMN Old yel 97.2 0.02 4.3E-07 57.9 16.6 80 415-497 235-326 (343)
285 TIGR01334 modD putative molybd 97.1 0.003 6.4E-08 61.2 10.0 82 393-490 181-267 (277)
286 TIGR00734 hisAF_rel hisA/hisF 97.1 0.016 3.5E-07 54.6 14.6 159 320-491 38-218 (221)
287 TIGR01769 GGGP geranylgeranylg 97.1 0.027 5.8E-07 52.2 15.6 158 318-486 11-205 (205)
288 KOG0538 Glycolate oxidase [Ene 97.1 0.059 1.3E-06 51.8 18.0 111 393-509 217-336 (363)
289 cd02911 arch_FMN Archeal FMN-b 97.1 0.0083 1.8E-07 57.1 12.6 67 411-488 155-222 (233)
290 PRK11197 lldD L-lactate dehydr 97.1 0.0043 9.4E-08 62.8 10.9 111 392-508 238-357 (381)
291 cd02940 DHPD_FMN Dihydropyrimi 97.1 0.0072 1.6E-07 59.9 12.4 47 442-491 237-286 (299)
292 PRK09427 bifunctional indole-3 97.1 0.03 6.5E-07 58.4 17.3 156 323-492 269-435 (454)
293 PRK10605 N-ethylmaleimide redu 97.1 0.021 4.6E-07 58.1 15.8 77 414-497 255-332 (362)
294 TIGR02708 L_lactate_ox L-lacta 97.0 0.0062 1.3E-07 61.4 11.2 93 392-490 221-316 (367)
295 PLN02979 glycolate oxidase 96.9 0.0075 1.6E-07 60.3 10.9 93 392-490 216-311 (366)
296 PRK08318 dihydropyrimidine deh 96.9 0.015 3.2E-07 60.7 13.6 47 442-491 237-287 (420)
297 TIGR02151 IPP_isom_2 isopenten 96.9 0.0026 5.5E-08 64.0 7.5 79 410-491 192-288 (333)
298 PF03932 CutC: CutC family; I 96.9 0.013 2.8E-07 54.0 11.1 144 322-478 11-194 (201)
299 TIGR00735 hisF imidazoleglycer 96.8 0.0041 8.9E-08 60.1 8.1 78 410-493 31-110 (254)
300 cd04731 HisF The cyclase subun 96.8 0.0051 1.1E-07 59.1 8.5 78 410-493 28-107 (243)
301 PF00697 PRAI: N-(5'phosphorib 96.7 0.005 1.1E-07 57.0 7.3 162 322-492 10-182 (197)
302 cd00959 DeoC 2-deoxyribose-5-p 96.7 0.043 9.3E-07 51.1 13.6 121 319-478 70-198 (203)
303 cd02929 TMADH_HD_FMN Trimethyl 96.7 0.054 1.2E-06 55.4 15.3 52 443-497 277-330 (370)
304 PRK11572 copper homeostasis pr 96.7 0.034 7.5E-07 52.7 12.6 103 370-478 78-193 (248)
305 COG3142 CutC Uncharacterized p 96.7 0.027 5.8E-07 51.9 11.4 144 322-478 12-195 (241)
306 PRK07998 gatY putative fructos 96.7 0.12 2.6E-06 50.4 16.6 141 321-490 87-233 (283)
307 PRK02083 imidazole glycerol ph 96.6 0.0065 1.4E-07 58.7 8.0 80 408-493 29-110 (253)
308 PRK10550 tRNA-dihydrouridine s 96.6 0.008 1.7E-07 59.8 8.5 74 414-493 154-231 (312)
309 TIGR02129 hisA_euk phosphoribo 96.6 0.0072 1.6E-07 57.6 7.6 70 411-492 41-110 (253)
310 PLN02493 probable peroxisomal 96.6 0.018 3.9E-07 58.0 10.9 93 392-490 217-312 (367)
311 COG1902 NemA NADH:flavin oxido 96.6 0.078 1.7E-06 53.7 15.4 84 414-500 243-332 (363)
312 PRK00507 deoxyribose-phosphate 96.5 0.092 2E-06 49.4 14.7 67 414-489 142-211 (221)
313 PLN02495 oxidoreductase, actin 96.5 0.061 1.3E-06 54.8 14.4 62 443-507 252-322 (385)
314 PF01070 FMN_dh: FMN-dependent 96.5 0.011 2.3E-07 60.0 8.9 95 391-491 217-314 (356)
315 TIGR01036 pyrD_sub2 dihydrooro 96.4 0.012 2.6E-07 59.2 8.5 78 411-491 226-322 (335)
316 cd04738 DHOD_2_like Dihydrooro 96.4 0.0049 1.1E-07 61.9 5.3 75 414-491 222-314 (327)
317 cd04741 DHOD_1A_like Dihydroor 96.3 0.19 4E-06 49.7 16.2 58 444-507 230-291 (294)
318 PRK13523 NADPH dehydrogenase N 96.3 0.011 2.4E-07 59.5 7.3 82 415-499 234-318 (337)
319 cd04732 HisA HisA. Phosphorib 96.2 0.019 4.2E-07 54.7 8.4 77 410-492 30-108 (234)
320 PRK12738 kbaY tagatose-bisphos 96.1 0.48 1E-05 46.3 17.6 145 321-490 87-236 (286)
321 PRK08255 salicylyl-CoA 5-hydro 96.1 0.2 4.4E-06 56.4 17.2 78 415-495 645-726 (765)
322 PRK13585 1-(5-phosphoribosyl)- 96.1 0.017 3.8E-07 55.3 7.5 79 409-493 32-112 (241)
323 PRK05835 fructose-bisphosphate 96.1 0.52 1.1E-05 46.4 17.6 147 321-490 87-259 (307)
324 PRK08610 fructose-bisphosphate 96.1 0.48 1E-05 46.3 17.2 143 321-490 90-237 (286)
325 PRK09195 gatY tagatose-bisphos 96.1 0.37 8E-06 47.1 16.4 145 321-490 87-236 (284)
326 PRK11815 tRNA-dihydrouridine s 96.1 0.032 6.9E-07 56.1 9.4 76 414-493 157-240 (333)
327 PRK07709 fructose-bisphosphate 96.0 0.52 1.1E-05 46.0 17.1 143 321-490 90-237 (285)
328 TIGR01858 tag_bisphos_ald clas 96.0 0.51 1.1E-05 46.0 16.9 145 321-490 85-234 (282)
329 PF00724 Oxidored_FMN: NADH:fl 96.0 0.031 6.7E-07 56.5 8.8 104 393-499 208-334 (341)
330 PRK13587 1-(5-phosphoribosyl)- 96.0 0.024 5.3E-07 53.9 7.6 79 409-493 31-112 (234)
331 PRK12737 gatY tagatose-bisphos 95.9 0.57 1.2E-05 45.8 17.0 145 321-490 87-236 (284)
332 TIGR00126 deoC deoxyribose-pho 95.9 0.2 4.3E-06 46.7 13.1 146 300-487 52-205 (211)
333 PTZ00314 inosine-5'-monophosph 95.9 0.093 2E-06 55.6 12.3 113 319-434 241-379 (495)
334 PRK12857 fructose-1,6-bisphosp 95.9 0.75 1.6E-05 45.0 17.4 144 322-490 88-236 (284)
335 COG1646 Predicted phosphate-bi 95.8 0.22 4.7E-06 46.3 12.7 165 318-492 28-226 (240)
336 KOG2550 IMP dehydrogenase/GMP 95.8 0.061 1.3E-06 53.7 9.6 118 371-491 256-388 (503)
337 cd00377 ICL_PEPM Members of th 95.7 0.46 1E-05 45.5 15.4 132 318-490 84-230 (243)
338 PF01884 PcrB: PcrB family; I 95.7 0.033 7.1E-07 52.3 7.2 167 320-501 21-226 (230)
339 cd00947 TBP_aldolase_IIB Tagat 95.7 0.64 1.4E-05 45.2 16.3 143 322-490 83-230 (276)
340 cd00956 Transaldolase_FSA Tran 95.7 0.2 4.2E-06 46.9 12.3 100 401-507 101-210 (211)
341 PRK04128 1-(5-phosphoribosyl)- 95.7 0.028 6.1E-07 53.3 6.7 74 410-490 31-106 (228)
342 COG0167 PyrD Dihydroorotate de 95.6 0.048 1E-06 53.6 8.2 65 441-508 225-294 (310)
343 PRK00748 1-(5-phosphoribosyl)- 95.6 0.044 9.6E-07 52.1 7.9 79 409-493 30-110 (233)
344 TIGR01182 eda Entner-Doudoroff 95.6 0.15 3.3E-06 47.1 11.1 71 393-478 52-123 (204)
345 TIGR01302 IMP_dehydrog inosine 95.6 0.11 2.3E-06 54.7 11.2 113 319-434 224-362 (450)
346 PRK14024 phosphoribosyl isomer 95.5 0.05 1.1E-06 52.1 8.0 77 410-493 33-111 (241)
347 TIGR00742 yjbN tRNA dihydrouri 95.5 0.072 1.6E-06 53.1 9.1 76 414-493 147-230 (318)
348 COG1411 Uncharacterized protei 95.5 0.59 1.3E-05 42.3 13.7 171 319-499 37-223 (229)
349 cd02808 GltS_FMN Glutamate syn 95.5 0.096 2.1E-06 53.9 10.3 80 409-491 225-319 (392)
350 PRK09196 fructose-1,6-bisphosp 95.5 0.71 1.5E-05 46.2 15.8 151 321-490 88-281 (347)
351 PRK07084 fructose-bisphosphate 95.4 0.83 1.8E-05 45.2 15.9 145 321-490 98-272 (321)
352 TIGR00875 fsa_talC_mipB fructo 95.4 0.17 3.7E-06 47.3 10.7 163 318-508 37-211 (213)
353 PRK12595 bifunctional 3-deoxy- 95.4 2.7 5.8E-05 42.7 20.0 166 318-490 132-326 (360)
354 PLN02826 dihydroorotate dehydr 95.4 0.072 1.6E-06 54.8 8.9 61 443-508 327-390 (409)
355 TIGR03572 WbuZ glycosyl amidat 95.3 0.074 1.6E-06 50.6 8.4 77 410-492 31-109 (232)
356 PF00478 IMPDH: IMP dehydrogen 95.3 0.27 5.8E-06 49.3 12.5 113 319-434 108-246 (352)
357 PRK13398 3-deoxy-7-phosphohept 95.3 3.1 6.8E-05 40.3 20.5 183 303-490 27-235 (266)
358 PF01207 Dus: Dihydrouridine s 95.2 0.024 5.3E-07 56.4 4.9 77 412-493 142-220 (309)
359 PRK01362 putative translaldola 95.1 0.27 5.9E-06 45.9 11.0 164 318-509 37-212 (214)
360 TIGR02319 CPEP_Pphonmut carbox 95.1 1.6 3.5E-05 42.9 16.8 129 348-490 63-237 (294)
361 TIGR02317 prpB methylisocitrat 95.0 1.8 3.8E-05 42.4 16.8 129 348-490 59-233 (285)
362 PRK14565 triosephosphate isome 94.9 0.29 6.4E-06 46.3 10.9 126 370-501 77-233 (237)
363 COG0191 Fba Fructose/tagatose 94.9 1.7 3.6E-05 42.1 15.9 145 321-489 88-237 (286)
364 PRK13803 bifunctional phosphor 94.9 1.9 4.1E-05 47.2 18.6 182 322-508 14-214 (610)
365 PRK12655 fructose-6-phosphate 94.9 0.34 7.3E-06 45.5 11.0 165 318-510 37-215 (220)
366 PRK01033 imidazole glycerol ph 94.9 0.11 2.3E-06 50.4 8.1 77 410-492 31-109 (258)
367 PRK11320 prpB 2-methylisocitra 94.8 2.3 5E-05 41.8 17.1 128 349-490 65-238 (292)
368 TIGR00007 phosphoribosylformim 94.8 0.12 2.6E-06 49.1 8.1 77 410-492 29-107 (230)
369 TIGR00167 cbbA ketose-bisphosp 94.8 1.8 3.8E-05 42.5 16.2 145 321-490 90-240 (288)
370 cd00452 KDPG_aldolase KDPG and 94.7 0.66 1.4E-05 42.6 12.6 75 393-485 48-123 (190)
371 PF01116 F_bP_aldolase: Fructo 94.7 0.63 1.4E-05 45.6 12.9 146 321-490 86-239 (287)
372 PLN02411 12-oxophytodienoate r 94.6 0.13 2.7E-06 53.0 8.3 76 421-499 273-355 (391)
373 PRK06843 inosine 5-monophospha 94.6 0.48 1E-05 48.5 12.4 113 319-433 153-290 (404)
374 PRK06552 keto-hydroxyglutarate 94.6 0.47 1E-05 44.4 11.4 76 393-485 57-135 (213)
375 PLN02274 inosine-5'-monophosph 94.4 0.18 4E-06 53.5 9.1 112 319-433 248-385 (505)
376 COG0149 TpiA Triosephosphate i 94.4 0.71 1.5E-05 43.9 12.0 132 370-504 80-249 (251)
377 TIGR01521 FruBisAldo_II_B fruc 94.4 2.7 5.8E-05 42.1 16.7 156 321-490 86-279 (347)
378 PRK12653 fructose-6-phosphate 94.3 0.59 1.3E-05 43.9 11.2 165 319-511 38-216 (220)
379 COG0042 tRNA-dihydrouridine sy 94.2 0.63 1.4E-05 46.6 12.0 77 414-495 158-237 (323)
380 PRK06015 keto-hydroxyglutarate 94.2 0.65 1.4E-05 42.9 11.0 70 394-478 49-119 (201)
381 TIGR03586 PseI pseudaminic aci 94.1 3.5 7.6E-05 41.2 16.9 157 318-478 17-217 (327)
382 PRK07114 keto-hydroxyglutarate 94.1 1.4 2.9E-05 41.5 13.2 65 400-478 69-134 (222)
383 TIGR02320 PEP_mutase phosphoen 94.1 6.5 0.00014 38.5 18.4 64 414-490 175-244 (285)
384 PLN02446 (5-phosphoribosyl)-5- 94.0 0.22 4.8E-06 47.8 7.9 76 407-492 41-117 (262)
385 cd04723 HisA_HisF Phosphoribos 94.0 0.25 5.3E-06 47.1 8.3 76 410-492 36-113 (233)
386 TIGR03569 NeuB_NnaB N-acetylne 93.9 4.7 0.0001 40.4 17.4 157 318-478 16-218 (329)
387 PRK13399 fructose-1,6-bisphosp 93.9 3.5 7.5E-05 41.4 16.3 151 321-490 88-281 (347)
388 cd00956 Transaldolase_FSA Tran 93.8 0.32 7E-06 45.4 8.6 107 318-428 64-185 (211)
389 COG0107 HisF Imidazoleglycerol 93.8 0.19 4.2E-06 46.5 6.7 79 410-494 31-111 (256)
390 PRK05718 keto-hydroxyglutarate 93.8 2.4 5.2E-05 39.6 14.2 75 393-485 59-134 (212)
391 TIGR01361 DAHP_synth_Bsub phos 93.8 6.9 0.00015 37.8 18.0 138 349-490 76-233 (260)
392 cd00331 IGPS Indole-3-glycerol 93.6 0.69 1.5E-05 43.4 10.6 106 323-432 86-205 (217)
393 PRK02506 dihydroorotate dehydr 93.3 0.083 1.8E-06 52.6 3.8 64 441-507 225-293 (310)
394 TIGR01520 FruBisAldo_II_A fruc 93.3 5.3 0.00012 40.1 16.3 147 322-490 115-291 (357)
395 PF13714 PEP_mutase: Phosphoen 93.3 2.4 5.3E-05 40.3 13.6 143 318-507 85-235 (238)
396 PRK14114 1-(5-phosphoribosyl)- 93.1 0.38 8.3E-06 45.9 8.0 78 409-494 30-110 (241)
397 PF04131 NanE: Putative N-acet 93.1 0.7 1.5E-05 41.8 9.0 104 321-429 54-174 (192)
398 PRK08673 3-deoxy-7-phosphohept 93.1 11 0.00023 37.9 20.6 178 304-490 94-301 (335)
399 PRK09140 2-dehydro-3-deoxy-6-p 93.0 2.6 5.7E-05 39.2 13.2 76 393-485 54-130 (206)
400 TIGR01306 GMP_reduct_2 guanosi 93.0 0.49 1.1E-05 46.9 8.7 83 395-486 76-165 (321)
401 cd01571 NAPRTase_B Nicotinate 93.0 0.31 6.7E-06 48.3 7.4 76 411-492 198-279 (302)
402 PRK12656 fructose-6-phosphate 92.9 5.8 0.00013 37.3 15.3 99 405-511 110-218 (222)
403 KOG4175 Tryptophan synthase al 92.9 2.8 6.1E-05 38.0 12.2 168 318-490 32-239 (268)
404 PRK00278 trpC indole-3-glycero 92.7 2.4 5.2E-05 41.0 13.0 106 323-432 125-244 (260)
405 TIGR03239 GarL 2-dehydro-3-deo 92.7 6.4 0.00014 37.8 15.8 160 323-490 25-234 (249)
406 PF01180 DHO_dh: Dihydroorotat 92.7 0.14 3.1E-06 50.6 4.6 46 442-490 229-277 (295)
407 TIGR02321 Pphn_pyruv_hyd phosp 92.6 11 0.00023 37.1 17.4 129 349-490 62-239 (290)
408 cd00516 PRTase_typeII Phosphor 92.5 0.83 1.8E-05 44.8 9.7 80 401-492 184-273 (281)
409 PRK00042 tpiA triosephosphate 92.4 1.2 2.7E-05 42.7 10.4 129 370-501 78-247 (250)
410 PF01487 DHquinase_I: Type I 3 92.4 0.33 7.2E-06 45.9 6.5 141 318-462 10-181 (224)
411 cd02810 DHOD_DHPD_FMN Dihydroo 92.4 1.6 3.5E-05 42.9 11.6 111 318-431 111-275 (289)
412 TIGR00433 bioB biotin syntheta 92.2 13 0.00027 36.6 18.7 171 319-494 66-281 (296)
413 cd04729 NanE N-acetylmannosami 92.2 0.74 1.6E-05 43.3 8.5 107 322-431 83-209 (219)
414 PRK13397 3-deoxy-7-phosphohept 92.1 8.6 0.00019 36.8 15.5 169 318-490 29-223 (250)
415 COG3684 LacD Tagatose-1,6-bisp 92.1 5.5 0.00012 37.7 13.6 133 332-491 128-268 (306)
416 COG0800 Eda 2-keto-3-deoxy-6-p 92.0 2.5 5.5E-05 39.0 11.3 91 376-481 36-131 (211)
417 TIGR01740 pyrF orotidine 5'-ph 92.0 0.7 1.5E-05 43.3 8.1 55 446-503 148-213 (213)
418 PF01081 Aldolase: KDPG and KH 92.0 0.82 1.8E-05 42.1 8.2 70 394-478 53-123 (196)
419 PRK15492 triosephosphate isome 91.9 1 2.2E-05 43.4 9.2 131 370-502 86-257 (260)
420 cd06556 ICL_KPHMT Members of t 91.9 1.9 4.1E-05 41.1 10.9 83 371-465 95-201 (240)
421 PRK14567 triosephosphate isome 91.9 1.4 3.1E-05 42.2 10.0 130 370-501 77-246 (253)
422 TIGR01305 GMP_reduct_1 guanosi 91.8 0.82 1.8E-05 45.3 8.4 112 319-433 107-246 (343)
423 PRK01130 N-acetylmannosamine-6 91.8 1.2 2.7E-05 41.8 9.6 107 322-432 79-206 (221)
424 COG0826 Collagenase and relate 91.7 2.6 5.7E-05 42.5 12.2 128 320-464 15-172 (347)
425 COG1304 idi Isopentenyl diphos 91.7 0.51 1.1E-05 47.7 7.1 80 406-490 224-306 (360)
426 TIGR01919 hisA-trpF 1-(5-phosp 91.6 0.79 1.7E-05 43.9 8.0 78 410-494 32-111 (243)
427 cd04730 NPD_like 2-Nitropropan 91.5 2.2 4.9E-05 40.4 11.2 105 319-432 68-189 (236)
428 KOG2550 IMP dehydrogenase/GMP 91.5 1.2 2.5E-05 44.9 9.1 117 319-435 251-390 (503)
429 PLN02617 imidazole glycerol ph 91.5 0.89 1.9E-05 48.6 9.0 78 409-492 267-360 (538)
430 PRK07188 nicotinate phosphorib 91.4 0.37 8.1E-06 48.5 5.8 48 444-492 263-316 (352)
431 PRK07094 biotin synthase; Prov 91.4 7 0.00015 39.1 15.1 85 401-490 184-282 (323)
432 PRK09197 fructose-bisphosphate 91.4 11 0.00023 37.9 15.8 144 325-490 122-283 (350)
433 cd08210 RLP_RrRLP Ribulose bis 91.3 9 0.0002 39.0 15.6 177 317-505 140-363 (364)
434 TIGR00640 acid_CoA_mut_C methy 91.3 1.6 3.5E-05 37.5 8.9 86 410-508 41-129 (132)
435 PRK08649 inosine 5-monophospha 91.3 0.72 1.6E-05 46.9 7.8 72 411-487 144-216 (368)
436 KOG4202 Phosphoribosylanthrani 91.3 1.9 4.2E-05 38.2 9.2 117 364-490 97-220 (227)
437 PF00977 His_biosynth: Histidi 91.2 0.14 3E-06 48.6 2.4 81 408-494 28-110 (229)
438 COG2513 PrpB PEP phosphonomuta 91.2 12 0.00025 36.4 15.2 129 348-490 64-238 (289)
439 PLN02591 tryptophan synthase 91.2 2.8 6E-05 40.2 11.2 107 319-431 94-221 (250)
440 TIGR00419 tim triosephosphate 91.1 2.7 5.8E-05 39.0 10.7 120 370-492 73-204 (205)
441 COG3010 NanE Putative N-acetyl 91.0 9.8 0.00021 34.9 13.7 105 320-429 87-210 (229)
442 cd00946 FBP_aldolase_IIA Class 91.0 13 0.00028 37.4 16.0 146 322-490 114-279 (345)
443 cd03174 DRE_TIM_metallolyase D 90.9 3.6 7.7E-05 39.7 12.1 153 318-478 19-217 (265)
444 PRK07455 keto-hydroxyglutarate 90.9 8 0.00017 35.4 13.6 95 373-485 32-131 (187)
445 COG0274 DeoC Deoxyribose-phosp 90.8 2.4 5.1E-05 39.5 9.8 124 324-489 83-215 (228)
446 PLN02429 triosephosphate isome 90.4 4.1 9E-05 40.2 11.8 129 370-501 139-307 (315)
447 PRK07107 inosine 5-monophospha 90.3 0.93 2E-05 48.2 7.9 112 319-433 242-386 (502)
448 PRK13586 1-(5-phosphoribosyl)- 90.3 1.3 2.8E-05 42.1 8.1 78 409-493 30-109 (232)
449 TIGR01093 aroD 3-dehydroquinat 90.3 4 8.7E-05 38.6 11.5 137 319-462 13-186 (228)
450 PRK01261 aroD 3-dehydroquinate 90.3 2.8 6.1E-05 39.6 10.3 145 318-474 33-193 (229)
451 cd04725 OMP_decarboxylase_like 90.1 1 2.3E-05 42.2 7.3 72 414-502 135-216 (216)
452 PRK12399 tagatose 1,6-diphosph 90.0 13 0.00027 36.8 14.6 144 325-491 112-280 (324)
453 PRK13111 trpA tryptophan synth 90.0 2.6 5.6E-05 40.7 10.0 107 319-432 105-232 (258)
454 PRK05096 guanosine 5'-monophos 90.0 3 6.5E-05 41.4 10.4 114 319-434 108-248 (346)
455 PRK14905 triosephosphate isome 90.0 3 6.5E-05 42.2 10.8 135 370-506 87-262 (355)
456 PRK05458 guanosine 5'-monophos 89.9 1.5 3.3E-05 43.7 8.5 83 395-486 79-168 (326)
457 KOG0538 Glycolate oxidase [Ene 89.6 2.7 5.7E-05 40.8 9.4 43 441-486 209-251 (363)
458 CHL00200 trpA tryptophan synth 89.3 1.8 3.9E-05 41.9 8.4 39 393-431 196-234 (263)
459 COG1954 GlpP Glycerol-3-phosph 89.3 11 0.00023 33.5 12.2 142 323-485 15-172 (181)
460 PRK04147 N-acetylneuraminate l 89.3 3.1 6.8E-05 41.0 10.3 49 318-367 24-78 (293)
461 PRK02412 aroD 3-dehydroquinate 89.3 3.7 8.1E-05 39.5 10.5 139 318-462 28-204 (253)
462 TIGR00262 trpA tryptophan synt 88.8 7 0.00015 37.7 12.0 39 393-431 192-230 (256)
463 TIGR01496 DHPS dihydropteroate 88.7 9.1 0.0002 37.0 12.7 85 302-386 3-104 (257)
464 PRK10558 alpha-dehydro-beta-de 88.6 21 0.00046 34.4 15.2 161 323-490 32-241 (256)
465 PF04481 DUF561: Protein of un 88.6 2.6 5.6E-05 38.9 8.2 71 400-487 15-89 (242)
466 PRK11572 copper homeostasis pr 88.5 4.8 0.0001 38.4 10.3 90 406-504 6-111 (248)
467 TIGR01304 IMP_DH_rel_2 IMP deh 88.5 1.9 4.1E-05 43.8 8.2 72 411-487 145-217 (369)
468 PRK13125 trpA tryptophan synth 88.3 4.4 9.5E-05 38.8 10.3 110 319-431 89-217 (244)
469 PRK15452 putative protease; Pr 88.2 10 0.00022 39.7 13.5 127 321-464 13-169 (443)
470 cd00311 TIM Triosephosphate is 88.2 3.2 7E-05 39.6 9.1 124 370-496 76-238 (242)
471 PRK11858 aksA trans-homoaconit 88.1 6.1 0.00013 40.6 11.8 153 318-478 26-215 (378)
472 PF00218 IGPS: Indole-3-glycer 88.1 7.4 0.00016 37.4 11.5 106 323-432 123-242 (254)
473 cd00453 FTBP_aldolase_II Fruct 88.0 31 0.00066 34.5 16.2 148 321-490 100-276 (340)
474 PLN02858 fructose-bisphosphate 88.0 19 0.00041 43.4 17.2 146 321-490 1182-1335(1378)
475 cd02803 OYE_like_FMN_family Ol 87.9 7.5 0.00016 38.9 12.2 59 373-431 236-314 (327)
476 cd00502 DHQase_I Type I 3-dehy 87.8 4.4 9.6E-05 38.2 9.9 92 331-425 24-147 (225)
477 COG0329 DapA Dihydrodipicolina 87.7 5.9 0.00013 39.2 11.0 114 306-460 12-135 (299)
478 COG0284 PyrF Orotidine-5'-phos 87.5 1.4 3.1E-05 41.9 6.2 38 469-509 200-237 (240)
479 PTZ00333 triosephosphate isome 87.3 8.2 0.00018 37.2 11.3 122 370-499 81-248 (255)
480 cd02809 alpha_hydroxyacid_oxid 87.2 15 0.00033 36.2 13.7 68 413-487 134-201 (299)
481 PRK10128 2-keto-3-deoxy-L-rham 87.2 30 0.00066 33.5 16.0 161 323-490 31-241 (267)
482 COG0106 HisA Phosphoribosylfor 87.1 3.5 7.5E-05 39.0 8.3 76 410-491 32-109 (241)
483 PLN02493 probable peroxisomal 87.1 12 0.00026 38.0 12.8 45 440-487 209-253 (367)
484 PF04476 DUF556: Protein of un 87.0 21 0.00046 33.6 13.4 162 324-493 13-215 (235)
485 PLN02535 glycolate oxidase 87.0 13 0.00027 37.9 13.0 45 440-487 208-252 (364)
486 PLN02979 glycolate oxidase 87.0 13 0.00028 37.6 12.9 45 440-487 208-252 (366)
487 PRK05265 pyridoxine 5'-phospha 86.8 28 0.00061 32.9 14.4 180 318-508 24-238 (239)
488 PRK12331 oxaloacetate decarbox 86.7 9.5 0.00021 40.0 12.3 151 318-478 26-224 (448)
489 PRK08662 nicotinate phosphorib 86.4 2.6 5.6E-05 42.5 7.7 72 411-492 214-294 (343)
490 PF05913 DUF871: Bacterial pro 86.1 11 0.00023 38.3 11.9 164 318-491 14-225 (357)
491 cd00945 Aldolase_Class_I Class 86.1 7.8 0.00017 35.3 10.4 110 318-428 65-201 (201)
492 cd04722 TIM_phosphate_binding 85.9 10 0.00022 34.2 11.0 103 324-428 77-199 (200)
493 cd04737 LOX_like_FMN L-Lactate 85.7 26 0.00056 35.5 14.4 43 441-486 207-249 (351)
494 PF03932 CutC: CutC family; I 85.4 7 0.00015 36.1 9.4 93 405-505 4-111 (201)
495 PF04309 G3P_antiterm: Glycero 85.3 3.6 7.7E-05 37.1 7.2 60 414-487 110-170 (175)
496 TIGR03151 enACPred_II putative 85.2 12 0.00025 37.3 11.6 105 320-433 76-195 (307)
497 PRK06256 biotin synthase; Vali 85.1 44 0.00096 33.5 19.3 98 401-503 206-317 (336)
498 PRK02227 hypothetical protein; 85.0 14 0.0003 34.9 11.2 90 406-507 5-106 (238)
499 PRK04161 tagatose 1,6-diphosph 85.0 33 0.00071 34.0 14.2 146 324-491 113-282 (329)
500 cd07944 DRE_TIM_HOA_like 4-hyd 84.9 35 0.00076 33.1 14.6 155 318-478 20-210 (266)
No 1
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=100.00 E-value=2.2e-81 Score=661.67 Aligned_cols=497 Identities=77% Similarity=1.160 Sum_probs=446.2
Q ss_pred cccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEE
Q 010244 14 EQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVV 93 (514)
Q Consensus 14 ~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i 93 (514)
.+.+|++++||+|+|||++||||++||++++.++|+++++++|+++.||+.++..+.++|++++.+|++.+++++++++|
T Consensus 3 ~~~~~~~~~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~~ql~~~~~d~~~~ai 82 (502)
T PLN02898 3 TESPMKVPHVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVAEQLKSVLSDMPVDVV 82 (502)
T ss_pred cCCCCCCCeEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHHHHHHHHHhCCCCCEE
Confidence 45678899999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHH
Q 010244 94 KTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVA 173 (514)
Q Consensus 94 ~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~ 173 (514)
++||+.+.++++.+.+++++++.+++|+||||.+++|..+++++..+.+++++++.+|+||||..|++.|+|.....+.+
T Consensus 83 k~G~l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~~~~~ 162 (502)
T PLN02898 83 KTGMLPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPLETVA 162 (502)
T ss_pred EECCcCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCCCCHH
Confidence 99999999999999999988766469999999999999999988888888789999999999999999999844556677
Q ss_pred HHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHH
Q 010244 174 DMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKV 253 (514)
Q Consensus 174 ~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~ 253 (514)
++.++++++.++|++.|+||+|+.+......++++++++.++++.++++..+++||||+|+|+|+++|++|+++++|++.
T Consensus 163 ~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~G~~l~eAv~~ 242 (502)
T PLN02898 163 DMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAKGSDMLSAVKV 242 (502)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHcCCCHHHHHHH
Confidence 88899999999999999999998642223345677766666778878887899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCccccccccccccccccccccCCCCceEEEEeCCCCCccCCCCHHHHHHHHHhCCCC
Q 010244 254 AKCFVETALDYSKDIVIGSGPQGPFDHLLRLKSTSRQSHRAEAFNPSDLFLYAVTDSGMNKKWGRSITDAVKAALEGGAT 333 (514)
Q Consensus 254 A~~~~~~~i~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~ 333 (514)
|..+++.+|+.+.+.+.|+|..+|++|++.+.....+....+.|.|.++++|+|||+..+..+.+++.+.+++++++|++
T Consensus 243 A~~~v~~ai~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~it~~~~~~~~~~~~~~~l~~~l~~Gv~ 322 (502)
T PLN02898 243 AKRYVETALEYSKDIGIGNGAQGPFNHLFFLKSWAKKSSRQSRFNPRNLFLYAVTDSGMNKKWGRSTVDAVRAAIEGGAT 322 (502)
T ss_pred HHHHHHHHHHhhhccCCCCCCCCChhhhhhhhcccccccccccCCcCCceEEEEECccccccccchHHHHHHHHHHcCCC
Confidence 99999999999876655666567889987775444333334567888899999999865322235688899999999999
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHH
Q 010244 334 IIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEE 413 (514)
Q Consensus 334 ~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e 413 (514)
+||||+|+.+.+++.++++++.++|+++++++++|+++++|.+.|+||||+++.+++....|+.++++.++|.||||.+|
T Consensus 323 ~vqlR~k~~~~~~~~~~a~~l~~~~~~~~~~liind~~~lA~~~~adGvHl~~~d~~~~~~r~~~~~~~~iG~S~h~~~e 402 (502)
T PLN02898 323 IVQLREKEAETREFIEEAKACLAICRSYGVPLLINDRVDVALACDADGVHLGQSDMPVRLARSLLGPGKIIGVSCKTPEQ 402 (502)
T ss_pred EEEEccCCCCHHHHHHHHHHHHHHHHHhCCEEEEcChHHHHHhcCCCEEEeChHhcCHHHHHHhcCCCCEEEEeCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889888889999999999999
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+++|.+.|+|||++||+|+|.+||..+++|++.++++++.+++||+|+|||+++|+.+++++|+++.||||++|+||+++
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~ 482 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQE 482 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCC
Confidence 99999999999999999999999998889999999999988999999999999999999999888888999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 010244 494 CILPESKKLHAVLMDAV 510 (514)
Q Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (514)
||.+.++++++.+.+..
T Consensus 483 d~~~~~~~~~~~~~~~~ 499 (502)
T PLN02898 483 DVLKATRKLHAILTEAL 499 (502)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988743
No 2
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=100.00 E-value=5.5e-50 Score=373.80 Aligned_cols=261 Identities=53% Similarity=0.814 Sum_probs=242.8
Q ss_pred CCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcc
Q 010244 18 MKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGM 97 (514)
Q Consensus 18 ~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~ 97 (514)
++++++|+|+|||+.||||++||+++++++|+|+++++|+++.||+.++..++++|++++.+|++.++++++++++++||
T Consensus 1 ~~~~~~LtIAGsD~sGGAGIqADLKTf~a~gvyg~saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~~v~avKtGM 80 (263)
T COG0351 1 MKLPVVLTIAGSDSSGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDIPVDAVKTGM 80 (263)
T ss_pred CCCceEEEEeccCCCccHHHHHHHHHHHhcCCccceEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcCCCCEEEECC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHH
Q 010244 98 LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCS 177 (514)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~ 177 (514)
+.+.++++.+.+.+++++..++|+||||.+++|..+++++..+.++++|+|+++++|||..|++.|+|..++.+.+++.+
T Consensus 81 L~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~ 160 (263)
T COG0351 81 LGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKE 160 (263)
T ss_pred cCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHH
Confidence 99999999999999999843499999999999999999999999999999999999999999999998447888999999
Q ss_pred HHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 010244 178 AAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCF 257 (514)
Q Consensus 178 ~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~ 257 (514)
+++.+.+.|+++|+||||+..+ ...+++|+++..+.+..++++..+++|+||+|+++|++.|++|.++++|++.|..|
T Consensus 161 a~~~i~~~g~~~VliKGGH~~~--~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~~l~~AV~~Ak~f 238 (263)
T COG0351 161 AAKLLHELGAKAVLIKGGHLEG--EAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLEEAVKKAKEF 238 (263)
T ss_pred HHHHHHHhCCCEEEEcCCCCCC--CceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999653 55688998888888999999988899999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCCCCcccccc
Q 010244 258 VETALDYSKDIVIGSGPQGPFDHLLR 283 (514)
Q Consensus 258 ~~~~i~~~~~~~~g~g~~~~~~~~~~ 283 (514)
+..+|+++... |.| +||++|+..
T Consensus 239 v~~AI~~~~~~--G~g-~gpv~~~~~ 261 (263)
T COG0351 239 VTRAIRDSLAI--GHG-HGPVNHFAA 261 (263)
T ss_pred HHHHHhhhccC--CCc-cccCCcccc
Confidence 99999966544 787 889998654
No 3
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=100.00 E-value=7.6e-50 Score=384.32 Aligned_cols=444 Identities=38% Similarity=0.523 Sum_probs=371.1
Q ss_pred ccccccccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCC
Q 010244 9 SATTTEQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDM 88 (514)
Q Consensus 9 ~~r~~~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~ 88 (514)
|+-.....+.+.|.+|+|+|||++||||++||++++.++|+|+++++|+++.||+.++.+++.+|++++.+|++..+.++
T Consensus 12 ~~~~t~~~~~~lPt~LTIAGSDcSGGAGIqADlKv~TAh~vYgMS~iTaltaQn~~gV~sv~~lpp~~V~qqidacL~Di 91 (523)
T KOG2598|consen 12 PPMLTTASNRKLPTVLTIAGSDCSGGAGIQADLKVMTAHGVYGMSVITALTAQNTVGVYSVHLLPPSFVSQQIDACLSDI 91 (523)
T ss_pred CchhhhhhhccCCeeEEEecCCCCCcccchhhhhhhhhhccchhhhhhhhhccCCccceeeccCCHHHHHHHHHHHhhcC
Confidence 34444455677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCC--
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGG-- 166 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~-- 166 (514)
++++|++||+++++....+.+.+++.+.+.+|+||||.+.+|..+...+.++.+.++++|.++|+|||..|+..|++.
T Consensus 92 ~C~VvKTGML~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~ 171 (523)
T KOG2598|consen 92 KCDVVKTGMLPSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEK 171 (523)
T ss_pred cccEEeecCcCchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcc
Confidence 999999999999999999999998887777999999999999999999999999999999999999999999999984
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCC---------C--CceEEEEeCCeEEEEeecccCCCCCCCCcch
Q 010244 167 ---MQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDS---------S--DAVDIFFDGEDFHELRSSRVNTRNTHGTGCT 232 (514)
Q Consensus 167 ---~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~---------~--~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~ 232 (514)
.++.+..|+.+.+..++++|+++|+++||+.+.+ . ...+++|++++++.++.+.+....++|+||+
T Consensus 172 ~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHGtgCt 251 (523)
T KOG2598|consen 172 REISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHGTGCT 251 (523)
T ss_pred cCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccCccch
Confidence 2456788999999999999999999999987632 1 2567888998899999998888899999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccccccccccccCCCCceEEEEeCCCC
Q 010244 233 LASCIAAELAKGSPMLSAVKVAKCFVETALDYSKDIVIGSGPQGPFDHLLRLKSTSRQSHRAEAFNPSDLFLYAVTDSGM 312 (514)
Q Consensus 233 f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~it~~~~ 312 (514)
++++|++.|++|.++.+|++.|..+++.+|+.+... +.++..|+||+++++. .++.|.+|..|+++.|..
T Consensus 252 LaSAIASnLA~g~sl~qAv~~ai~yvq~Ai~~s~~i--~~~s~~plnh~~al~i--------vP~k~g~f~~yl~~hpkv 321 (523)
T KOG2598|consen 252 LASAIASNLARGYSLLQAVQGAIEYVQNAIAISCDI--TKGSVKPLNHVYALEI--------VPYKPGSFFNYLINHPKV 321 (523)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhcCCc--ccCcCCcccchhheee--------cCCCcHHHHHHHhhCccc
Confidence 999999999999999999999999999999999877 5554459999999855 567778899999999998
Q ss_pred CccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHH
Q 010244 313 NKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPAR 392 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~ 392 (514)
.+.|..-.-+-....++.|--.. .+-. .-+.+-..-+...|+.+++....++..+.+.+.-..++|+........
T Consensus 322 ~p~W~s~inh~fv~~~~~Gtl~~---~~fq--~~l~qdy~ylIn~ara~~v~g~ks~~i~~ie~~~~iv~~v~~e~~~h~ 396 (523)
T KOG2598|consen 322 KPKWDSYINHEFVKQLADGTLER---KKFQ--DYLEQDYLYLINYARAHGVAGSKSPTIEDIEKEAVIVQHVREELVQHV 396 (523)
T ss_pred ChhHHHHhhHHHHHHHhcCcccc---hhhH--HHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHhHHHHHHHhhccchH
Confidence 87664333333344456662222 2211 122333445667888899999999988888887778889985544445
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCc-cCCHHHHHHHHHcCCCCEEEECCCCccc
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNL-TVGLDGLKTVCLASKLPVVAIGGIGISN 468 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~-~~g~~~l~~~~~~~~~pv~a~GGi~~~~ 468 (514)
..|..++.....+.+|-. +++.+|+..+++++.-.-.+++..+...+ ..+++.++.-....+-++|+.++.+-.+
T Consensus 397 ~l~e~~Gv~~~d~~~~~~-~pa~~Aysry~~d~~~~g~~~~l~~a~~py~~~l~~lk~~~~as~g~vy~~w~e~~~~ 472 (523)
T KOG2598|consen 397 RLREEYGVSDPDYLSCKK-GPALRAYSRYINDTGRRGNWQELVIALNPYVFALDKLKDEITASEGSVYVEWVETYSS 472 (523)
T ss_pred HHHHHhCCCchhhhhcCc-cHHHHHHHHHhhhhhcccChhhhhhhhchhhHHHHHHHhhcccCCCCceeehhhhccc
Confidence 599999999999999988 89999999999999888888877665444 3455666555555688999999987543
No 4
>PRK12616 pyridoxal kinase; Reviewed
Probab=100.00 E-value=4.2e-43 Score=342.07 Aligned_cols=263 Identities=38% Similarity=0.593 Sum_probs=231.7
Q ss_pred CCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCe--eeeEecCHHHHHHHHHHHHcCCCcCEEEE
Q 010244 18 MKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGV--QGVNIVPEDFVAAQLKSVLSDMQVDVVKT 95 (514)
Q Consensus 18 ~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~i~~ 95 (514)
|++++||+|+|+|++||||++||+++++++|+|+++++|+++.||+.++ ..+.+++++++.+|++.+++++++++|++
T Consensus 1 ~~~~~vl~iaG~D~sggaGi~aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~~~~aiki 80 (270)
T PRK12616 1 MSMHKALTIAGSDSSGGAGIQADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGIGVDAMKT 80 (270)
T ss_pred CCCCeEEEEEeeCCCchHHHHHHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCCCCCEEEE
Confidence 5678999999999999999999999999999999999999999999863 67889999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHH
Q 010244 96 GMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADM 175 (514)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~ 175 (514)
||+++.++++.+.+++++++.+++|+||||.++++..++.++..+.+++.+++.++++|||..|++.|+|.....+.++.
T Consensus 81 G~l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~~~~~~ 160 (270)
T PRK12616 81 GMLPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIKTVEQM 160 (270)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCCCHHHH
Confidence 99999999999999999886556999999998777677777777888878999999999999999999983246677888
Q ss_pred HHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHH
Q 010244 176 CSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAK 255 (514)
Q Consensus 176 ~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~ 255 (514)
.++++++.++|++.|+||+|+.+..+...++++++++.+.++.++++..+++||||+|+|+|+++|++|+++++|+++|.
T Consensus 161 ~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~g~~l~~Av~~A~ 240 (270)
T PRK12616 161 KEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAKGSEVKEAIYAAK 240 (270)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 89999999999999999999865222333566777766677888888888999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCCcccccc
Q 010244 256 CFVETALDYSKDIVIGSGPQGPFDHLLR 283 (514)
Q Consensus 256 ~~~~~~i~~~~~~~~g~g~~~~~~~~~~ 283 (514)
.+++.+|+.+.+. |+| .+|++|+..
T Consensus 241 ~~~~~~i~~s~~~--g~~-~~~~~~~~~ 265 (270)
T PRK12616 241 EFITAAIKESFPL--NQY-VGPTKHSAL 265 (270)
T ss_pred HHHHHHHHHHhhc--CCC-CCChhhccc
Confidence 9999999998766 777 678888543
No 5
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=3e-43 Score=322.33 Aligned_cols=204 Identities=46% Similarity=0.675 Sum_probs=193.7
Q ss_pred CceEEEEeCCCCCccCCCCH-HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCC
Q 010244 301 DLFLYAVTDSGMNKKWGRSI-TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDA 379 (514)
Q Consensus 301 ~~~ly~it~~~~~~~~~~~~-~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga 379 (514)
.+++|+||++.... .... .+++++++++|++++|+|+|+.+..++.+.+++++++|++|+++++|||++++|.+.+|
T Consensus 5 ~~~lylvt~~~~~~--~~~~~~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~dlA~~~~A 82 (211)
T COG0352 5 LLRLYLVTDRPLIY--DGVDLLEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIINDRVDLALAVGA 82 (211)
T ss_pred ccceEEEcCCcccc--ccchhHHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHHHHHhCCC
Confidence 57899999987654 2233 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEE
Q 010244 380 DGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVV 459 (514)
Q Consensus 380 ~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~ 459 (514)
||||+++.|++...+++.+++.+++|+|||+.+|+.+|.+.|+|||++||+|||+||++.++.|++.++++++...+|+|
T Consensus 83 dGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~v 162 (211)
T COG0352 83 DGVHLGQDDMPLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVV 162 (211)
T ss_pred CEEEcCCcccchHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred EECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 460 AIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 460 a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
|+|||+++|+.+++++|++ |||++|+||.++||.++++++++.+++.
T Consensus 163 AIGGi~~~nv~~v~~~Ga~---gVAvvsai~~a~d~~~a~~~~~~~~~~~ 209 (211)
T COG0352 163 AIGGINLENVPEVLEAGAD---GVAVVSAITSAADPAAAAKALRNALEDE 209 (211)
T ss_pred EEcCCCHHHHHHHHHhCCC---eEEehhHhhcCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999 9999999999999999999999998763
No 6
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=3.7e-42 Score=335.42 Aligned_cols=262 Identities=33% Similarity=0.505 Sum_probs=224.3
Q ss_pred CCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEccc
Q 010244 19 KIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGML 98 (514)
Q Consensus 19 ~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~ 98 (514)
.++.||+|+|+|++||||++||+++++++|+|+++++|+++.||+.++..+++++++++.+|++.+++++++++|++||+
T Consensus 3 ~~p~VLtIAGsDpsGGAGiqADlkt~~alGv~g~sviTalTaQnt~~V~~v~~v~~~~i~~Ql~all~D~~i~aIKiGmL 82 (321)
T PTZ00493 3 GVSNILSIAGSDSCGGAGMQADIKTAMGLGCHCCTALVVLTAQNTKEVKRIVEIEEKFIVEQLDSIFADVTIDVVKLGVL 82 (321)
T ss_pred CCCEEEEEeeeCCCCchHHHHHHHHHHHcCCccceEEEEEEEEcCCceEEEEECCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCC-----CCcEEEecceecCCCCCCCC-hhHHHHHHHhhcccceEEcCCHHHHHHhhCC----CC
Q 010244 99 PSTDLVKVLLQSLSEFP-----VRALVVDPVMVSTSGDVLAG-PSTITGLRENLLPMADIVTPNVKEASALLGG----MQ 168 (514)
Q Consensus 99 ~~~~~~~~~~~~~~~~~-----~~~ivlDPv~~~~~g~~~~~-~~~~~~l~~~ll~~~diitpN~~E~~~L~g~----~~ 168 (514)
.+.++++.+.+++++++ ..++|+||||.+++|..+.+ .+..+.+++.|+|++++||||..|++.|+|. ..
T Consensus 83 ~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~ 162 (321)
T PTZ00493 83 YSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMD 162 (321)
T ss_pred CCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCC
Confidence 99999999999998763 22499999999999999988 4777888888999999999999999999971 22
Q ss_pred CCCHHHHHHHHHHHHh-cCCCeEEEecccCCC------CCCceEEEEeC---------------C------eEEEEeecc
Q 010244 169 VVTVADMCSAAKLLHN-LGPRTVLVKGGDLPD------SSDAVDIFFDG---------------E------DFHELRSSR 220 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~-~g~~~Vvvt~g~~g~------~~~~~~~~~~~---------------~------~~~~~~~~~ 220 (514)
+ +.+++.++++++.+ +|+++|+||||+... +....++++.. + +.+++..++
T Consensus 163 ~-~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 241 (321)
T PTZ00493 163 L-SKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKLRSKR 241 (321)
T ss_pred C-CHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEEEecc
Confidence 2 46788999999986 699999999998531 12345676531 1 135677777
Q ss_pred cCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccc
Q 010244 221 VNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETALDYSKDIVIGSGPQGPFDHLLRL 284 (514)
Q Consensus 221 ~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~~~g~g~~~~~~~~~~~ 284 (514)
++...++|+||+|+++|+++|++|+++++|++.|..|++.+|+.+.+. |.| ..+++++..+
T Consensus 242 i~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~~A~~fv~~aI~~s~~~--g~g-~~~v~~~~~~ 302 (321)
T PTZ00493 242 KPGKDIHGTGCTLSTAIACYLAKKHNILQSCIESKKYIYNCIRYAYPF--GSK-SQGLNHLKAS 302 (321)
T ss_pred cCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhc--CCC-CCCCCHHHHh
Confidence 776678999999999999999999999999999999999999998765 555 3345665444
No 7
>PRK12412 pyridoxal kinase; Reviewed
Probab=100.00 E-value=5.3e-42 Score=334.17 Aligned_cols=259 Identities=41% Similarity=0.643 Sum_probs=229.1
Q ss_pred CCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCC--eeeeEecCHHHHHHHHHHHHcCCCcCEEEEcc
Q 010244 20 IPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAG--VQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGM 97 (514)
Q Consensus 20 ~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~ 97 (514)
++.||+|+|+|++||||++||+++++++|+|+++++|+++.||+.+ +....+.+++++.+|++.+++++++++|++||
T Consensus 1 ~~~vl~iag~D~sggaGi~aD~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~q~~~l~~d~~~~~ikiG~ 80 (268)
T PRK12412 1 LNKALTIAGSDTSGGAGIQADLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLKPQLETTIEGVGVDALKTGM 80 (268)
T ss_pred CCeEEEEEeeCCCchHHHHHHHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 4689999999999999999999999999999999999999999876 67788899999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHH
Q 010244 98 LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCS 177 (514)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~ 177 (514)
+.+.++++.+.+++++++.+++|+||||.+.+|..++.++..+.+++++++++|++|||..|++.|+| .+..+.+++.+
T Consensus 81 l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g-~~~~~~~~~~~ 159 (268)
T PRK12412 81 LGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSG-VKINSLEDMKE 159 (268)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhC-cCCCCHHHHHH
Confidence 99999999999999988765599999999988877777766677777899999999999999999998 66667788899
Q ss_pred HHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 010244 178 AAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCF 257 (514)
Q Consensus 178 ~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~ 257 (514)
++++|.++|++.|+||+|+.|......++++.+++.+.++.++++..+++|+||+|+|+|+++|++|+++++|+++|..+
T Consensus 160 aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g~~l~eA~~~A~~~ 239 (268)
T PRK12412 160 AAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKGKPVKEAVKTAKEF 239 (268)
T ss_pred HHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999999999986522233345666666567888888888999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCCCCccccc
Q 010244 258 VETALDYSKDIVIGSGPQGPFDHLL 282 (514)
Q Consensus 258 ~~~~i~~~~~~~~g~g~~~~~~~~~ 282 (514)
++.+++.+.+. |+| .+|++|+.
T Consensus 240 ~~~~i~~~~~~--g~g-~~~~~~~~ 261 (268)
T PRK12412 240 ITAAIRYSFKI--NEY-VGPTHHGA 261 (268)
T ss_pred HHHHHHHHhcc--CCC-CCCcCccc
Confidence 99999998765 777 67877743
No 8
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=100.00 E-value=5.4e-42 Score=331.99 Aligned_cols=253 Identities=56% Similarity=0.877 Sum_probs=226.7
Q ss_pred EEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcccCCHH
Q 010244 23 VLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGMLPSTD 102 (514)
Q Consensus 23 vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~~~~~ 102 (514)
||+|+|+|++||||++||+++++++|+|+++++|+++.||+.++..+++++++++.+|++.+++++++++|++||+.+.+
T Consensus 1 vl~iag~D~sggaGi~aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~~~q~~~~~~d~~~~aikiG~l~~~~ 80 (254)
T TIGR00097 1 ALTIAGSDSGGGAGIQADLKTFSALGVFGTSVITALTAQNTRGVTGVYPIPPDFVEAQLDAVFSDIPVDAAKTGMLASAE 80 (254)
T ss_pred CEEEeeeCCCcHHHHHHHHHHHHHcCCeecceeEEEEeEcCcceEEEEECCHHHHHHHHHHHHhCCCCCEEEECCcCCHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010244 103 LVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLL 182 (514)
Q Consensus 103 ~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~~a~~l 182 (514)
.++.+.+++++++.+++|+|||+++++|..+++++..+.+++.+++++|+||||..|++.|+| .+..+.++..++++.|
T Consensus 81 ~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g-~~~~~~~~~~~~a~~l 159 (254)
T TIGR00097 81 IVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLG-TKIRTEQDMIKAAKKL 159 (254)
T ss_pred HHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhC-CCCCCHHHHHHHHHHH
Confidence 999999999988763599999999888888887777777777789999999999999999998 5566677888999999
Q ss_pred HhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 010244 183 HNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETAL 262 (514)
Q Consensus 183 ~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i 262 (514)
.++|++.|+||+|+.++ ..+.++++++++.++++.++++..+++|+||+|+|+|+++|++|+++++|+++|+.+++.+|
T Consensus 160 ~~~g~~~Vvvt~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g~~l~eA~~~A~~~~~~~i 238 (254)
T TIGR00097 160 RELGPKAVLIKGGHLEG-DQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKGLSLKEAVKEAKEFVTGAI 238 (254)
T ss_pred HhcCCCEEEEeCCCCCC-CceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998542 22335677777677788888888899999999999999999999999999999999999999
Q ss_pred hcccccccCCCCCCCccc
Q 010244 263 DYSKDIVIGSGPQGPFDH 280 (514)
Q Consensus 263 ~~~~~~~~g~g~~~~~~~ 280 (514)
+.+... |+| .+|++|
T Consensus 239 ~~~~~~--~~~-~~~~~~ 253 (254)
T TIGR00097 239 RYGLNI--GHG-HGPLNH 253 (254)
T ss_pred HHhhcC--CCC-CCCCCC
Confidence 998755 776 667766
No 9
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=100.00 E-value=4.9e-41 Score=333.95 Aligned_cols=262 Identities=26% Similarity=0.292 Sum_probs=225.8
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCCCCCCCccccccccccccc---------ccccccc---C
Q 010244 231 CTLASCIAAELAKGSPMLSAVKVAKCFVETALDYSKDIVIGSGPQGPFDHLLRLKSTSRQ---------SHRAEAF---N 298 (514)
Q Consensus 231 D~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~~~g~g~~~~~~~~~~~~~~~~~---------~~~~~~~---~ 298 (514)
.-+-|.+.+.|+.|+++++|+..|.+++...+..+.+- + ..-...++.+.....+ ....+.| .
T Consensus 133 ~~~~a~~~a~la~gf~~~DA~~lA~a~~~~~~~~~~~~----w-p~~~~~fP~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 207 (437)
T PRK12290 133 EQHLAWVLTLLALDFPIEDALTLARAMLTQGDNVSRET----W-PTQFELFPTPVLNDRRLDIQVGWSKEGATRAFPTLD 207 (437)
T ss_pred HHHHHHHHHHHhCCCChHhHHHHHHHHHhCCCCccccc----C-CcCHHHCCceecccccccccccccccccccCCCCCC
Confidence 47899999999999999999999999988766443321 2 2223444444211100 0111234 4
Q ss_pred CCCceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCC
Q 010244 299 PSDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACD 378 (514)
Q Consensus 299 ~~~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~g 378 (514)
|..+.+|+|||+. +++++++++|+++||||+|+.+..++.++++++.++|++++++++|||++++|.++|
T Consensus 208 ~~~l~LY~Vtd~~----------~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~g 277 (437)
T PRK12290 208 KQSLGLYPVVDDV----------EWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQ 277 (437)
T ss_pred ccCceEEEEeCCH----------HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcC
Confidence 5678899999862 368999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHcC---
Q 010244 379 ADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLAS--- 454 (514)
Q Consensus 379 a~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~~--- 454 (514)
|+|||+++.|++....|+..+++.++|+|||+.+|+.+|.+.|+|||++||||||.||+. .++.|++.++++++.+
T Consensus 278 AdGVHLGQeDL~~~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~ 357 (437)
T PRK12290 278 AYGVHLGQEDLEEANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTI 357 (437)
T ss_pred CCEEEcChHHcchhhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhc
Confidence 999999999999888999888899999999999999999999999999999999999984 6889999999887765
Q ss_pred ------CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 455 ------KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 455 ------~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
++||+|+|||+++|+.+++++|++ |||++|+||+++||.+++++|++.++...
T Consensus 358 ~~~~~~~iPVVAIGGI~~~Ni~~vl~aGa~---GVAVVSAI~~A~DP~aa~~~l~~~~~~~~ 416 (437)
T PRK12290 358 PYQGQTGFPTVAIGGIDQSNAEQVWQCGVS---SLAVVRAITLAEDPQLVIEFFDQVMAENQ 416 (437)
T ss_pred cccccCCCCEEEECCcCHHHHHHHHHcCCC---EEEEehHhhcCCCHHHHHHHHHHHHhhcC
Confidence 699999999999999999999999 99999999999999999999999998764
No 10
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=6.2e-40 Score=320.28 Aligned_cols=258 Identities=50% Similarity=0.813 Sum_probs=225.3
Q ss_pred CCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEccc
Q 010244 19 KIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGML 98 (514)
Q Consensus 19 ~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~ 98 (514)
+++.||+|+|+|++||||+++|+++++++|+++++++|++++||+.++.....++++.+.+|++.++++.++++|++||+
T Consensus 3 ~~~~vl~i~g~d~~ggaG~~adi~~~~~~g~~~~~v~Ta~~~q~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ai~iG~l 82 (266)
T PRK06427 3 KRPIALTIAGSDSGGGAGIQADLKTFQALGVYGMSAITALTAQNTLGVQRVHPIPPEFVAAQLDAVFSDIRIDAVKIGML 82 (266)
T ss_pred CCCEEEEEeecCCCCcHHHHHHHHHHHHcCCEEeeeeeEEEeecCCCeeEEEeCCHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 36789999999999999999999999999999999999999999988888889999999999999999899999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHH-HHH
Q 010244 99 PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVAD-MCS 177 (514)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~-~~~ 177 (514)
.+.++++.+.+++++++..++|+||||++.++..+++++..+.+++++++++|++|||..|++.|+| .+..+.++ ..+
T Consensus 83 ~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g-~~~~~~~~~~~~ 161 (266)
T PRK06427 83 ASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTG-LPIADTEDEMKA 161 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhC-CCCCCcHHHHHH
Confidence 9999999999999987654599999999888777777777777877899999999999999999998 44444444 788
Q ss_pred HHHHHHhcCCCeEEEeccc--CCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHH
Q 010244 178 AAKLLHNLGPRTVLVKGGD--LPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAK 255 (514)
Q Consensus 178 ~a~~l~~~g~~~Vvvt~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~ 255 (514)
+++++.++|++.|+||+++ .| ....++++++++.+.++.++++.++++|+||+|+|+|+++|++|+++++|+++|+
T Consensus 162 ~a~~l~~~g~~~Vvit~g~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~~g~~l~~A~~~A~ 239 (266)
T PRK06427 162 AARALHALGCKAVLIKGGHLLDG--EESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELAKGASLLDAVQTAK 239 (266)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCC--CceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999999998 33 2233467776666777877888789999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCCccccc
Q 010244 256 CFVETALDYSKDIVIGSGPQGPFDHLL 282 (514)
Q Consensus 256 ~~~~~~i~~~~~~~~g~g~~~~~~~~~ 282 (514)
.+++.+++.+.+. |.| .++.++++
T Consensus 240 ~~~~~~i~~~~~~--~~~-~~~~~~~~ 263 (266)
T PRK06427 240 DYVTRAIRHALEI--GQG-HGPVNHFA 263 (266)
T ss_pred HHHHHHHHHHhcc--CCC-CCcchhcc
Confidence 9999999998765 666 55666644
No 11
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=100.00 E-value=8.5e-41 Score=321.14 Aligned_cols=245 Identities=41% Similarity=0.629 Sum_probs=208.4
Q ss_pred CCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcccCCHHHHHHHHH
Q 010244 30 DSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGMLPSTDLVKVLLQ 109 (514)
Q Consensus 30 d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~~~~~~~~~~~~ 109 (514)
|++||||++||+++++++|+++++++|+++.||+.++..+.+++.+++.+|++.++++.++++|++||+++.++++.+.+
T Consensus 1 DpsggaGi~aDi~t~~a~G~~~~~v~Talt~qn~~~~~~~~~~~~~~~~~ql~~~~~~~~~~aikiG~l~~~~~v~~i~~ 80 (246)
T PF08543_consen 1 DPSGGAGIQADIKTISALGVHGCPVPTALTSQNTYGVFDIEPVDSEMIKAQLDALLEDMKFDAIKIGYLGSAEQVEIIAD 80 (246)
T ss_dssp ETTSSSHHHHHHHHHHHTTEEEEEEEEEEEEEETTEEEEEEE--HHHHHHHHHHHHHTSC-SEEEE-S-SSHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCccceEeEEEEecCCcceEEEEECCHHHHHHHHHHhcccccccEEEEcccCCchhhhhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCCe
Q 010244 110 SLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRT 189 (514)
Q Consensus 110 ~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~~a~~l~~~g~~~ 189 (514)
++++.+. ++|+||||++.++..+++++..+.++++|+|.+|+||||..|++.|+| .++.+.+++.+++++|+++|++.
T Consensus 81 ~l~~~~~-~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g-~~i~~~~~~~~~~~~l~~~G~~~ 158 (246)
T PF08543_consen 81 FLKKPKI-PVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTG-REINSEEDIEEAAKALLALGPKN 158 (246)
T ss_dssp HHHHTTT-EEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHT-S--SSHHHHHHHHHHHHHTS-SE
T ss_pred HHhccCC-CEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhC-CCCCChHhHHHHHHHHHHhCCce
Confidence 9977665 699999999988888899999999998899999999999999999998 77888999999999999999999
Q ss_pred EEEecccCC-CCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc
Q 010244 190 VLVKGGDLP-DSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 190 Vvvt~g~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
|+|||++.. +.....++++.+++.+.+..++.+...++|+||+|+++|+++|++|+++++|++.|..+++.+|+++.+.
T Consensus 159 VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g~~l~~Av~~A~~~v~~~i~~t~~~ 238 (246)
T PF08543_consen 159 VVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKGYSLEEAVEKAKNFVRRAIKNTIQL 238 (246)
T ss_dssp EEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999852 2223346677777778888888775689999999999999999999999999999999999999998876
Q ss_pred ccCCCCCCCcc
Q 010244 269 VIGSGPQGPFD 279 (514)
Q Consensus 269 ~~g~g~~~~~~ 279 (514)
|+| .+|+|
T Consensus 239 --g~~-~~~~~ 246 (246)
T PF08543_consen 239 --GMG-AGPVN 246 (246)
T ss_dssp --TSS-S-B--
T ss_pred --CCC-CCCCC
Confidence 777 66765
No 12
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=100.00 E-value=2.5e-39 Score=302.58 Aligned_cols=203 Identities=20% Similarity=0.213 Sum_probs=188.7
Q ss_pred CceEEEEeCCCCCccCCCCHHHHHHHHHhCC-CCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCC
Q 010244 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGG-ATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDA 379 (514)
Q Consensus 301 ~~~ly~it~~~~~~~~~~~~~~~~~~~~~~G-v~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga 379 (514)
.+++|+|||+.... +.+.+.+++++++| +++||||+|+.+..++.++++++.++|+++|++++||+++++|.++|+
T Consensus 12 ~~~ly~It~~~~~~---~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~~dlA~~~~a 88 (221)
T PRK06512 12 RCRIVLVAPPIADG---AELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGDSRIAGRVKA 88 (221)
T ss_pred CCeEEEEeCCCccc---ccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCHHHHHHHhCC
Confidence 35899999986532 57889999999999 799999999999999999999999999999999999999999999999
Q ss_pred CeEEeCCCCCCHHHHHhhcCCCcEEEEe-cCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCE
Q 010244 380 DGVHLGQSDMPARTARALLGPDKIIGVS-CKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPV 458 (514)
Q Consensus 380 ~gvhl~~~~~~~~~~~~~~~~~~~ig~s-~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv 458 (514)
|||||++.+.+....|+..+++.++|+| +|+.+++.+|.+.|+||++||||| |.+|+..++.|++.++++++.+++||
T Consensus 89 dGVHLg~~d~~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~-t~tK~~~~p~gl~~l~~~~~~~~iPv 167 (221)
T PRK06512 89 DGLHIEGNLAALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLG-ADNKPEAHPRNLSLAEWWAEMIEIPC 167 (221)
T ss_pred CEEEECccccCHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCC-CCCCCCCCCCChHHHHHHHHhCCCCE
Confidence 9999999998888999888889999998 578999999999999999999998 56888778899999999999899999
Q ss_pred EEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 459 VAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 459 ~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
||+|||+++|+.+++++|++ |||++|+||+++||.++++++++.+++..
T Consensus 168 vAIGGI~~~n~~~~~~~GA~---giAvisai~~~~dp~~a~~~~~~~~~~~~ 216 (221)
T PRK06512 168 IVQAGSDLASAVEVAETGAE---FVALERAVFDAHDPPLAVAQANALLDEKA 216 (221)
T ss_pred EEEeCCCHHHHHHHHHhCCC---EEEEhHHhhCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999 99999999999999999999999998753
No 13
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=100.00 E-value=4.9e-38 Score=302.80 Aligned_cols=241 Identities=54% Similarity=0.820 Sum_probs=213.6
Q ss_pred eEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcccCCH
Q 010244 22 HVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGMLPST 101 (514)
Q Consensus 22 ~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~~~~ 101 (514)
.||+|+|+|++||||+++|+++++++|+++++++|++++||+.++....+++++.+.++++.++++.++++|++||+.+.
T Consensus 1 ~vl~i~g~d~~ggag~~adi~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~G~l~~~ 80 (242)
T cd01169 1 VVLTIAGSDSSGGAGIQADLKTFAALGVYGMSVITALTAQNTLGVFGVHPVPPEFVAAQLDAVLEDIPVDAIKIGMLGSA 80 (242)
T ss_pred CEEEEeeeCCCCHHHHHHHHHHHHHcCCEecceeEEEEeEcCcceeEEEECCHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 48999999999999999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010244 102 DLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAKL 181 (514)
Q Consensus 102 ~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~~a~~ 181 (514)
++++.+.+++++.+..++|+|||+++..+..+++++..+.+++.+++++|++|||..|++.|+| ....+.++..++++.
T Consensus 81 ~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g-~~~~~~~~~~~~~~~ 159 (242)
T cd01169 81 EIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTG-LEIATEEDMMKAAKA 159 (242)
T ss_pred HHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhC-CCCCCHHHHHHHHHH
Confidence 9999999999887334599999999888777788777777777888999999999999999998 555555667778899
Q ss_pred HHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 010244 182 LHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETA 261 (514)
Q Consensus 182 l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~ 261 (514)
+.++|++.|++|+|+.++ +.+.++++++++.++++.++++..+++|+||+|+|+|++.|++|+++++|+++|+.+++.+
T Consensus 160 l~~~g~~~Vvit~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~~~~~A~~~A~~~~~~~ 238 (242)
T cd01169 160 LLALGAKAVLIKGGHLPG-DEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKGLSLEEAVREAKEYVTQA 238 (242)
T ss_pred HHhcCCCEEEEecCCCCC-CceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998642 2233566776666778888887789999999999999999999999999999999999999
Q ss_pred Hhc
Q 010244 262 LDY 264 (514)
Q Consensus 262 i~~ 264 (514)
|+.
T Consensus 239 i~~ 241 (242)
T cd01169 239 IRN 241 (242)
T ss_pred HHc
Confidence 875
No 14
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=5.3e-38 Score=331.88 Aligned_cols=267 Identities=44% Similarity=0.686 Sum_probs=228.3
Q ss_pred cccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEE
Q 010244 14 EQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVV 93 (514)
Q Consensus 14 ~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i 93 (514)
....|+++.||+|+|+|++||||++||+++++++|+++++++|+++.||+.++..+.+++++.+.+|++.++++.++++|
T Consensus 224 ~~~~~~~~~vLtIag~D~sggaGi~aDi~t~~~lg~~~~~~vta~t~qn~~~~~~~~~~~~~~~~~ql~~l~~d~~~~~I 303 (504)
T PTZ00347 224 VENPMKIPTVLTVSGSDSGGGAGHQADLKTLEALGVYSTSALTSLTAQNTKGVQQIQVVNEDFFAAQIDSVMSDFNISVV 303 (504)
T ss_pred ccCCCCCCeEEEEeCcCCCChHHHHHHHHHHHHcCCcccchheeEEeEcCcceeeEEeCCHHHHHHHHHHHHhCCCCCEE
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhH----HHHHHHhhcccceEEcCCHHHHHHhhCCCCC
Q 010244 94 KTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPST----ITGLRENLLPMADIVTPNVKEASALLGGMQV 169 (514)
Q Consensus 94 ~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~----~~~l~~~ll~~~diitpN~~E~~~L~g~~~~ 169 (514)
++||+++.++++.+.+.++ +. ++|+||||++++|..+..... .+.++++++|.+|+||||..|++.|+|....
T Consensus 304 k~G~l~s~e~i~~i~~~l~--~~-~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~ 380 (504)
T PTZ00347 304 KLGLVPTARQLEIVIEKLK--NL-PMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEI 380 (504)
T ss_pred EECCcCCHHHHHHHHHHhc--CC-CEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCC
Confidence 9999999999999999986 33 499999999888877665432 3455557899999999999999999983235
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEecccCCC-CCCceEEEEeC--CeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCC
Q 010244 170 VTVADMCSAAKLLHNLGPRTVLVKGGDLPD-SSDAVDIFFDG--EDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSP 246 (514)
Q Consensus 170 ~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~-~~~~~~~~~~~--~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~ 246 (514)
.+.++..++++.+.+.|++.|+||+|+.+. ++...++++.+ ++.+.++.++++.++++||||+|+|+|+++|++|.+
T Consensus 381 ~~~~~~~~aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~G~~ 460 (504)
T PTZ00347 381 TGVYEARAAAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAISSFLARGYT 460 (504)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHhCCCC
Confidence 667788889999999999999999998531 12223456653 345667888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCCCCcccccc
Q 010244 247 MLSAVKVAKCFVETALDYSKDIVIGSGPQGPFDHLLR 283 (514)
Q Consensus 247 l~~A~~~A~~~~~~~i~~~~~~~~g~g~~~~~~~~~~ 283 (514)
+++|++.|..+++.+|+.+.+.++|+|..+|++|+.+
T Consensus 461 l~eAv~~A~~~v~~~i~~~~~~~~g~~~~~~~~~~~~ 497 (504)
T PTZ00347 461 VPDAVERAIGYVHEAIVRSCGVPLGQGTNRPLVHSLN 497 (504)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCchhhhh
Confidence 9999999999999999999764457754778888654
No 15
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=3.8e-38 Score=345.45 Aligned_cols=268 Identities=38% Similarity=0.574 Sum_probs=230.4
Q ss_pred cCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEE
Q 010244 16 YKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKT 95 (514)
Q Consensus 16 ~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~ 95 (514)
..-+++.||+|+|+|++||||++||+++++++|+|+++++|+++.||+.++..+.+++++++.+|++.+++++++++|++
T Consensus 237 ~~~~~~~vLtIaGsD~sggAGi~aDlkt~~alg~~~~~viTaltaQn~~~v~~v~~~~~~~v~~Ql~~~~~d~~~~aiKi 316 (755)
T PRK09517 237 NSPSAPRVLSIAGTDPTGGAGIQADLKSIAAGGGYGMCVVTALVAQNTHGVNTIHTPPLTFLEEQLEAVFSDVTVDAVKL 316 (755)
T ss_pred ccCCCCeEEEEeccCCCcHHHHHHHHHHHHHcCCcccchheeEeeEcccceeEEeeCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 33346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHH
Q 010244 96 GMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADM 175 (514)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~ 175 (514)
||+.+.+.++.+.+++++++.+++|+||||.+++|..+++++..+.++ ++++.+|+||||..|++.|+|.....+.+++
T Consensus 317 GmL~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~-~Llp~adlItPN~~Ea~~L~g~~~~~~~~d~ 395 (755)
T PRK09517 317 GMLGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALR-RLAVHVDVVTPNIPELAVLCGEAPAITMDEA 395 (755)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHH-HHhCcccCccCCHHHHHHHhCCCCCCCHHHH
Confidence 999999999999999998654459999999999998888888777776 6999999999999999999983334567788
Q ss_pred HHHHHHHHhcCCCeEEEecccCCCCCCceEEEEe-CCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHH
Q 010244 176 CSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD-GEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVA 254 (514)
Q Consensus 176 ~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A 254 (514)
.++++++.+.+.+.|+||+|+..+.. ..+.++. ++..+.++.++++..+++|+||+|+|+|+++|++|+++++|++.|
T Consensus 396 ~~aa~~L~~~~g~~VVVkgGh~~~~~-~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La~G~sl~eAv~~A 474 (755)
T PRK09517 396 IAQARGFARTHGTIVIVKGGHLTGDL-ADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIAAGESVEKALEWA 474 (755)
T ss_pred HHHHHHHHHhcCCEEEEcCCcCCCCc-cceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 88899998765568999999742111 1134444 444567888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCccccccccc
Q 010244 255 KCFVETALDYSKDIVIGSGPQGPFDHLLRLKS 286 (514)
Q Consensus 255 ~~~~~~~i~~~~~~~~g~g~~~~~~~~~~~~~ 286 (514)
..+++.+|+.+....+|+| .+|+||+..+..
T Consensus 475 ~~~v~~~i~~a~~~~~g~g-~~p~~~~~~~~~ 505 (755)
T PRK09517 475 TRWLNEALRHADHLAVGSG-NGPVDHGHLARR 505 (755)
T ss_pred HHHHHHHHHhcCCCCCCCC-CCCcchhhhhhh
Confidence 9999999999855445777 789999766543
No 16
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=100.00 E-value=8.8e-38 Score=331.21 Aligned_cols=263 Identities=42% Similarity=0.646 Sum_probs=227.1
Q ss_pred CCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcc
Q 010244 18 MKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGM 97 (514)
Q Consensus 18 ~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~ 97 (514)
+++++||+|+|+|++||||+++|+++++++|+|+++++|+++.||+.++..+.+++++.+.+|++.+++++++++|++||
T Consensus 27 ~~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v~~~~~~~i~~ql~~l~~d~~~~aikiG~ 106 (530)
T PRK14713 27 AATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAVHVPPADFLRAQLDAVSDDVTVDAVKIGM 106 (530)
T ss_pred CCCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeeeccCCHHHHHHHHHHHHhCCCCCEEEECC
Confidence 45789999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCC-CCHHHHH
Q 010244 98 LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQV-VTVADMC 176 (514)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~-~~~~~~~ 176 (514)
+++.++++.+.+++++.+.+++|+||||++++|..+++++..+.++ ++++.+|+||||..|++.|+| .+. .+.++..
T Consensus 107 l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~-~Ll~~advItPN~~Ea~~Ltg-~~~~~~~~d~~ 184 (530)
T PRK14713 107 LGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALR-ELVPRADLITPNLPELAVLLG-EPPATTWEEAL 184 (530)
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHH-HHhhhhheecCChHHHHHHhC-CCCCCCHHHHH
Confidence 9999999999999988765569999999988887777878777776 699999999999999999998 433 4667888
Q ss_pred HHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCC-eEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHH
Q 010244 177 SAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGE-DFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAK 255 (514)
Q Consensus 177 ~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~ 255 (514)
++++++.+.+.+.|+||+|+.+. +...++++..+ +.+.++.++++.++++|+||+|+|+|++.|++|.++++|++.|.
T Consensus 185 ~aa~~L~~~~g~~VvItgG~~~~-~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~G~~l~eAv~~A~ 263 (530)
T PRK14713 185 AQARRLAAETGTTVLVKGGHLDG-QRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGRGGDWAAALRWAT 263 (530)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCC-CcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 88999987666799999998532 12224555444 36677888888889999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCCCccccccc
Q 010244 256 CFVETALDYSKDIVIGSGPQGPFDHLLRL 284 (514)
Q Consensus 256 ~~~~~~i~~~~~~~~g~g~~~~~~~~~~~ 284 (514)
.+++.+++.+....+|.| .++++++..+
T Consensus 264 ~~v~~~i~~a~~~~~g~g-~~~~~~~~~~ 291 (530)
T PRK14713 264 AWLHGAIAAGAALQVGTG-NGPVDHFHRA 291 (530)
T ss_pred HHHHHHHHhCCCCCCCCC-CCCcccchhh
Confidence 999999998855555777 6788885444
No 17
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=100.00 E-value=3.7e-38 Score=310.57 Aligned_cols=200 Identities=45% Similarity=0.686 Sum_probs=190.8
Q ss_pred CceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCC
Q 010244 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDAD 380 (514)
Q Consensus 301 ~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~ 380 (514)
.+++|+|||+. .++.+.+++++++|+++||||.|+.+..++.++++.+..+|++++++++|||++++|.+.++|
T Consensus 146 ~~~LylIT~~~------~~ll~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~vdlAl~~~aD 219 (347)
T PRK02615 146 DARLYLITSPS------ENLLEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCHRYGALFIVNDRVDIALAVDAD 219 (347)
T ss_pred cCCEEEEECCc------hhHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC
Confidence 46899999982 358889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEE
Q 010244 381 GVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVA 460 (514)
Q Consensus 381 gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a 460 (514)
|||+++.+++...+|+..+++.++|.||||++|+.+|.+.|+|||++||+|+|.|||+.++.|++.++++++.+++||||
T Consensus 220 GVHLgq~dl~~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~A 299 (347)
T PRK02615 220 GVHLGQEDLPLAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFA 299 (347)
T ss_pred EEEeChhhcCHHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE
Confidence 99999999998899998889999999999999999999999999999999999999998889999999999999999999
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
+|||+++|+.+++++|++ |||++|+||+++||.+.++.|.+.+++.
T Consensus 300 iGGI~~~ni~~l~~~Ga~---gVAvisaI~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 300 IGGIDKSNIPEVLQAGAK---RVAVVRAIMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred ECCCCHHHHHHHHHcCCc---EEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999 9999999999999999999999988763
No 18
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=100.00 E-value=6.9e-38 Score=291.42 Aligned_cols=195 Identities=31% Similarity=0.390 Sum_probs=182.2
Q ss_pred CceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCC
Q 010244 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDAD 380 (514)
Q Consensus 301 ~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~ 380 (514)
.+++|+|||.. +.+++++++|+++||||+|+.+.+++.++++++..+|++++++++||+++++|.++++|
T Consensus 12 ~~~ly~i~~~~----------~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~liInd~~~lA~~~~ad 81 (211)
T PRK03512 12 RLGLYPVVDSV----------QWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQARLFINDYWRLAIKHQAY 81 (211)
T ss_pred cceEEEEECCH----------HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCHHHHHHHcCCC
Confidence 35799999872 35889999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHc-CCCCE
Q 010244 381 GVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLA-SKLPV 458 (514)
Q Consensus 381 gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~-~~~pv 458 (514)
|||+++.+++....|+.++.+.++|+||||.+|+.+|.+.|+||+++||+|+|.||++ .+++|++.++++++. .++||
T Consensus 82 GVHlg~~d~~~~~~r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV 161 (211)
T PRK03512 82 GVHLGQEDLETADLNAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPT 161 (211)
T ss_pred EEEcChHhCCHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCE
Confidence 9999999998888888778899999999999999999999999999999999999996 577899999999877 48999
Q ss_pred EEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 459 VAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 459 ~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
+|+|||+++|+.+++++|++ |||++|+||+++||.+.+++|++.+..
T Consensus 162 ~AiGGI~~~ni~~l~~~Ga~---GiAvisai~~~~d~~~~~~~l~~~~~~ 208 (211)
T PRK03512 162 VAIGGISLERAPAVLATGVG---SIAVVSAITQAADWRAATAQLLELAEV 208 (211)
T ss_pred EEECCCCHHHHHHHHHcCCC---EEEEhhHhhCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999 999999999999999999999988754
No 19
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=100.00 E-value=2.6e-38 Score=289.21 Aligned_cols=180 Identities=48% Similarity=0.774 Sum_probs=162.2
Q ss_pred EEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEE
Q 010244 304 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVH 383 (514)
Q Consensus 304 ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvh 383 (514)
||+|||+..+. +++.+.+++++++|+++||||+|+.+..++.++++++.++|+++++++++|+++++|.+.+++|||
T Consensus 1 ly~It~~~~~~---~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvH 77 (180)
T PF02581_consen 1 LYLITDPRLCG---DDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVH 77 (180)
T ss_dssp EEEEE-STTST---CHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEE
T ss_pred CEEEeCCchhc---chHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEE
Confidence 79999998763 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECC
Q 010244 384 LGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGG 463 (514)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GG 463 (514)
+++.+++....|+.++++.++|+||||.+|+++|.+.|+||+++||+|+|.|||+.+++|++.++++++.+++||||+||
T Consensus 78 l~~~~~~~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGG 157 (180)
T PF02581_consen 78 LGQSDLPPAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGG 157 (180)
T ss_dssp EBTTSSSHHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS
T ss_pred ecccccchHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcC
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHCCCCCCceEEEeecc
Q 010244 464 IGISNASDVMKIGVSNLKGVAVVSAL 489 (514)
Q Consensus 464 i~~~~~~~~~~~Ga~~~~gva~~~~i 489 (514)
|+++|+.+++++|++ |||++|+|
T Consensus 158 I~~~~i~~l~~~Ga~---gvAvi~aI 180 (180)
T PF02581_consen 158 ITPENIPELREAGAD---GVAVISAI 180 (180)
T ss_dssp --TTTHHHHHHTT-S---EEEESHHH
T ss_pred CCHHHHHHHHHcCCC---EEEEEeeC
Confidence 999999999999999 99999975
No 20
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1e-36 Score=316.60 Aligned_cols=255 Identities=45% Similarity=0.711 Sum_probs=224.0
Q ss_pred CCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcccC
Q 010244 20 IPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGMLP 99 (514)
Q Consensus 20 ~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~~ 99 (514)
.+.||+|+|+|+.||||++||+++++++|+|+++++|+++.||+.++..+..++++++.+|++.++++++++++++||+.
T Consensus 2 ~~~vltiaG~D~~ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~ 81 (448)
T PRK08573 2 IPVALTIAGSDSGGGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLS 81 (448)
T ss_pred CCEEEEEeeeCCCCHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcC
Confidence 47899999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHHHH
Q 010244 100 STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAA 179 (514)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~~a 179 (514)
+.+.+..+++.+++++.+ +++||||++++|..+++++..+.+.+.+++++|++|||..|++.|+| .+..+.++..+++
T Consensus 82 ~~e~~~~i~~~~k~~g~~-vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g-~~i~~~~d~~~aa 159 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFP-LVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTG-MKIRSVEDARKAA 159 (448)
T ss_pred CHHHHHHHHHHHHHcCCC-EEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhC-CCCCCHHHHHHHH
Confidence 999999999999988775 99999999888877777777677766889999999999999999998 6666778888999
Q ss_pred HHHHh-cCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 010244 180 KLLHN-LGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCFV 258 (514)
Q Consensus 180 ~~l~~-~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~ 258 (514)
++|.+ .|++.|++|+|+.++ ..+.++++.+++.++++.++++.++++||||+|+|+|+++|++|+++++|+++|+.++
T Consensus 160 ~~L~~~~G~~~VvVt~G~~~g-~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~A~~~~ 238 (448)
T PRK08573 160 KYIVEELGAEAVVVKGGHLEG-EEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKTAKKFI 238 (448)
T ss_pred HHHHHHcCCCEEEEecccCCC-CceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99974 799999999987431 1233466666666678888888889999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCCCCCCccc
Q 010244 259 ETALDYSKDIVIGSGPQGPFDH 280 (514)
Q Consensus 259 ~~~i~~~~~~~~g~g~~~~~~~ 280 (514)
..+++.+... |.| +++.++
T Consensus 239 ~~al~~~~~~--g~g-~~~~~~ 257 (448)
T PRK08573 239 TMAIKYGVKI--GKG-HCPVNP 257 (448)
T ss_pred HHHHHHhhcc--CCC-CCCcch
Confidence 9999988655 666 455555
No 21
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=1.1e-34 Score=281.15 Aligned_cols=249 Identities=34% Similarity=0.532 Sum_probs=208.2
Q ss_pred CCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEcc
Q 010244 18 MKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGM 97 (514)
Q Consensus 18 ~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~ 97 (514)
|+.+.||+|+|+|++||||+++|+++++++|+++.++.|+++.+|..+. .+...+.+.+.++++.+ .+.++.++++|+
T Consensus 1 ~~~~~vl~iag~d~~ggaG~~aD~~~~~~~~~~~~~~~t~~t~~~~~G~-~v~~~~~~~l~~~l~~l-~~~~~~~i~~G~ 78 (253)
T PRK12413 1 MKTNYILAISGNDIFSGGGLHADLATYTRNGLHGFVAVTCLTAMTEKGF-EVFPVDKEIFQQQLDSL-KDVPFSAIKIGL 78 (253)
T ss_pred CCCCeEEEEeeeCCCCHHHHHHHHHHHHHcCCccCeeeEEEecccCCce-EEEECCHHHHHHHHHHh-hCCCCCEEEECC
Confidence 6788999999999999999999999999999999999999999999884 67788999999999887 677899999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHH
Q 010244 98 LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCS 177 (514)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~ 177 (514)
+++.+..+.+.+++++....++++|||+++..+.....+...+.++ +++|++|+++||..|++.|+| .+..+.++..+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~-~ll~~~dli~pN~~E~~~L~g-~~~~~~~~~~~ 156 (253)
T PRK12413 79 LPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELI-QFFPYVTVITPNLVEAELLSG-KEIKTLEDMKE 156 (253)
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHH-HHhccCcEECCCHHHHHHHhC-cCCCCHHHHHH
Confidence 9888888999999885433359999999977654344444444554 688999999999999999998 66667788889
Q ss_pred HHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 010244 178 AAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCF 257 (514)
Q Consensus 178 ~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~ 257 (514)
+++++.++|++.|++|+|+.+..+...++++++++. +.+..+...++++|+||+|+|+|++.|++|+++++|+++|..+
T Consensus 157 ~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~GaGDaf~a~~~~~l~~g~~l~ea~~~A~~~ 235 (253)
T PRK12413 157 AAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKEF-VILESPVLEKNNIGAGCTFASSIASQLVKGKSPLEAVKNSKDF 235 (253)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCEE-EEEeecccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999864222233455655543 3444455567999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCC
Q 010244 258 VETALDYSKDIVIGSG 273 (514)
Q Consensus 258 ~~~~i~~~~~~~~g~g 273 (514)
++.+|+++... |.|
T Consensus 236 ~~~~l~~~~~~--g~~ 249 (253)
T PRK12413 236 VYQAIQQSDQY--GVV 249 (253)
T ss_pred HHHHHHHHHhc--CCC
Confidence 99999998765 555
No 22
>PRK08999 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=288.10 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=171.9
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCe
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADG 381 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~g 381 (514)
+.+|+|||+..+. ...+.+.+++++++|+++||||+|+.+..++.++++++.++|++++++++||+++++|.++|+||
T Consensus 130 p~ly~it~~~~~~--~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~G 207 (312)
T PRK08999 130 PDTYLITPEGEDG--DAAFLARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADG 207 (312)
T ss_pred CCEEEEECccccc--cHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCE
Confidence 5899999987643 23577889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEE
Q 010244 382 VHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAI 461 (514)
Q Consensus 382 vhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~ 461 (514)
||+++.+.+....|+ ++++.++|+||||.+|+.+|.+.|+||+++||+|+|.|||+.+++|++.++++++.+++||+|+
T Consensus 208 vHl~~~d~~~~~~r~-~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~Ai 286 (312)
T PRK08999 208 VHLTSAQLAALAARP-LPAGRWVAASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYAL 286 (312)
T ss_pred EEcChhhcChHhhcc-CCCCCEEEEecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 999999988777776 6789999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCcccHHHHHHCCCCCCceEEEeeccc
Q 010244 462 GGIGISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 462 GGi~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
|||+++|+.+++++|++ |||++|+||
T Consensus 287 GGI~~~~~~~~~~~g~~---gva~i~~~~ 312 (312)
T PRK08999 287 GGLGPGDLEEAREHGAQ---GIAGIRGLW 312 (312)
T ss_pred CCCCHHHHHHHHHhCCC---EEEEEEEeC
Confidence 99999999999999999 999999987
No 23
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=100.00 E-value=8.4e-34 Score=264.07 Aligned_cols=194 Identities=47% Similarity=0.745 Sum_probs=180.3
Q ss_pred eEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeE
Q 010244 303 FLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGV 382 (514)
Q Consensus 303 ~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gv 382 (514)
++|+|||+..+. +++.+.+++++++|+++||+|.|+.+..++.++++++..+|++++.++++|++++++.+.|++||
T Consensus 1 ~ly~it~~~~~~---~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~~~~la~~~g~~Gv 77 (196)
T TIGR00693 1 GLYLITDPQDGP---ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVNDRVDLALALGADGV 77 (196)
T ss_pred CEEEEECCcccc---ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEECHHHHHHHcCCCEE
Confidence 489999987653 56889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCC-ccCCHHHHHHHHHcC-CCCEEE
Q 010244 383 HLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANN-LTVGLDGLKTVCLAS-KLPVVA 460 (514)
Q Consensus 383 hl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~-~~~g~~~l~~~~~~~-~~pv~a 460 (514)
|+++.+.+....++.++.+.++|+||||.+|+.+|.+.|+||+++||+|+|.+|++. +..|++.++++++.+ ++||+|
T Consensus 78 Hl~~~~~~~~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a 157 (196)
T TIGR00693 78 HLGQDDLPASEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVA 157 (196)
T ss_pred ecCcccCCHHHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 999988888888888888899999999999999999999999999999999999985 567999999999876 699999
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHH
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKL 502 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~ 502 (514)
+|||+++|+.+++++|++ ||+++|+||+++||.+.+++|
T Consensus 158 ~GGI~~~~~~~~~~~G~~---gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 158 IGGITLENAAEVLAAGAD---GVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred ECCcCHHHHHHHHHcCCC---EEEEhHHhhCCCCHHHHHHhC
Confidence 999999999999999999 999999999999999988753
No 24
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=100.00 E-value=1e-33 Score=274.57 Aligned_cols=244 Identities=23% Similarity=0.272 Sum_probs=198.0
Q ss_pred eEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCe-eeeEecCHHHHHHHHHHHHcC---CCcCEEEEcc
Q 010244 22 HVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGV-QGVNIVPEDFVAAQLKSVLSD---MQVDVVKTGM 97 (514)
Q Consensus 22 ~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~i~~G~ 97 (514)
+||+|+|+|++||+|+++|+++++++|++++.++|+++.||+..+ .....++++.+.++++.+.+. .++++|++|+
T Consensus 1 ~vl~i~~~~~~g~ag~~ad~~~~~~~g~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 80 (254)
T cd01173 1 RVLSIQSHVVHGYVGNSAAVFPLQRLGWDVDALPTVQFSNHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGY 80 (254)
T ss_pred CEEEEecceecceECCeeHHHHHHHcCCccceeCceecCCCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEec
Confidence 589999999999999999999999999999999999999998766 555678888888888777553 5789999999
Q ss_pred cCCHHHHHHHHHHHhcCC----CCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHH
Q 010244 98 LPSTDLVKVLLQSLSEFP----VRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVA 173 (514)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~----~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~ 173 (514)
+++.+..+.+.+++++.+ ..++|+||||++.++....+++..+.+++.+.+++|++|||..|++.|+| .+..+.+
T Consensus 81 l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g-~~~~~~~ 159 (254)
T cd01173 81 LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTG-KKINDLE 159 (254)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcC-CCcCCHH
Confidence 988888777777776532 23499999998544333346666677775555599999999999999998 5566677
Q ss_pred HHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccC-CCCCCCCcchHHHHHHHHHHcCCCHHHHHH
Q 010244 174 DMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVN-TRNTHGTGCTLASCIAAELAKGSPMLSAVK 252 (514)
Q Consensus 174 ~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~ 252 (514)
+..++++++.++|++.|++|+|+..+.+....+++++++.+.++.+.++ +++++|+||+|+|+|+++|++|+++++|++
T Consensus 160 ~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l~~g~~~~~a~~ 239 (254)
T cd01173 160 DAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARLLKGKSLAEALE 239 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 8889999999999999999998742111122455665554555555566 589999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 010244 253 VAKCFVETALDYSK 266 (514)
Q Consensus 253 ~A~~~~~~~i~~~~ 266 (514)
+|+++++.+|+.+.
T Consensus 240 ~A~~~~~~~i~~~~ 253 (254)
T cd01173 240 KALNFVHEVLEATY 253 (254)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 25
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=100.00 E-value=3e-33 Score=274.12 Aligned_cols=246 Identities=22% Similarity=0.314 Sum_probs=206.6
Q ss_pred CCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeE--ecCHHHHHHHHHHHHcCC---CcCEEE
Q 010244 20 IPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVN--IVPEDFVAAQLKSVLSDM---QVDVVK 94 (514)
Q Consensus 20 ~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~--~~~~~~~~~~l~~l~~~~---~~~~i~ 94 (514)
+.+||+|++..++|.+|+.+++++++++|+.++.++|++++ |+.+|..+. .++++++.++++.+.++. ++|+|+
T Consensus 15 ~~~vl~i~~~~~~G~v~~~~a~~~l~~~G~~v~~lpTv~~s-~~~~y~~~~~~~~~~~~i~~~l~~~~~~~~l~~~d~i~ 93 (281)
T PRK08176 15 QADIVAVQSQVVYGSVGNSIAVPAIKANGLRVFAVPTVLLS-NTPHYPTFYGGAIPDEWFSGYLRALQERDALRQLRAVT 93 (281)
T ss_pred cceEEEEeceeeecccccHHHHHHHHHcCCcccccceEeec-CCCCCCCcCCeeCCHHHHHHHHHHHHhcCccccCCEEE
Confidence 55799999999999999999999999999999999998876 445676553 677899999999987754 899999
Q ss_pred EcccCCHHHHHHHHHHHhcC----CCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCC
Q 010244 95 TGMLPSTDLVKVLLQSLSEF----PVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVV 170 (514)
Q Consensus 95 ~G~~~~~~~~~~~~~~~~~~----~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~ 170 (514)
+||+++.+.++.+.+++++. ...++|+||||++.++..+.+++..+.+++++++++|++|||..|++.|+| .+..
T Consensus 94 ~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g-~~~~ 172 (281)
T PRK08176 94 TGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEILTG-KPCR 172 (281)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHHhC-CCCC
Confidence 99999999999999998763 223599999999888778888888888887799999999999999999998 5556
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEecccCCC-CCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHH
Q 010244 171 TVADMCSAAKLLHNLGPRTVLVKGGDLPD-SSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLS 249 (514)
Q Consensus 171 ~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~ 249 (514)
+.++..+++++|+++|++.|+||+|+.|. ++....+++++++.+..+.+.. ..+++||||+|+|+|++++++|+++++
T Consensus 173 ~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~GaGD~faa~~~a~l~~g~~l~~ 251 (281)
T PRK08176 173 TLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVISHPRV-DTDLKGTGDLFCAELVSGLLKGKALTD 251 (281)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEecCcc-CCCCCChhHHHHHHHHHHHhcCCCHHH
Confidence 67788899999999999999999998762 2222234556555444444444 459999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 010244 250 AVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 250 A~~~A~~~~~~~i~~~~~~ 268 (514)
|+++|..+++.+|+.+.+.
T Consensus 252 Av~~A~~~v~~~i~~t~~~ 270 (281)
T PRK08176 252 AAHRAGLRVLEVMRYTQQA 270 (281)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987643
No 26
>PRK05756 pyridoxamine kinase; Validated
Probab=100.00 E-value=2e-33 Score=276.92 Aligned_cols=247 Identities=22% Similarity=0.277 Sum_probs=203.2
Q ss_pred CCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCC-CeeeeEecCHHHHHHHHHHHHcC---CCcCEEEE
Q 010244 20 IPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTA-GVQGVNIVPEDFVAAQLKSVLSD---MQVDVVKT 95 (514)
Q Consensus 20 ~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~~~i~~ 95 (514)
|++||+|+|++++|++|+.+|+++++++|++++.++|+++++|+. +......++++.+.+.++.+... .++++|++
T Consensus 1 ~~~il~i~~~~~~G~~g~~~~~~~l~~~g~~~~~~~T~~~s~~t~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 80 (286)
T PRK05756 1 MKNILSIQSHVVYGHVGNSAAVFPMQRLGVNVWPLNTVQFSNHTGYGKWTGCVMPPSHLTEIVQGIADIGWLGECDAVLS 80 (286)
T ss_pred CCcEEEEeceeecccccchhHHHHHHHcCCcceeeceEeecCCCCCCCccCeeCCHHHHHHHHHHHHhcCccccCCEEEE
Confidence 458999999999999999999999999999999999999998875 22233567776677666665331 27899999
Q ss_pred cccCCHHHHHHHHHHHhcC---CC-CcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCC
Q 010244 96 GMLPSTDLVKVLLQSLSEF---PV-RALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVT 171 (514)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~---~~-~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~ 171 (514)
|++++.+..+.+.+++++. +. ..+|+||||++.++..+.+++..+.+++.+++++|++|||..|++.|+| .+..+
T Consensus 81 G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~~L~g-~~~~~ 159 (286)
T PRK05756 81 GYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELEWLSG-RPVET 159 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHHHHhC-CCcCC
Confidence 9999998888888887643 21 2489999999877777888888888887899999999999999999998 55566
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccCCC--CCCceEEEEeCCeEEEEeecccCC-CCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 172 VADMCSAAKLLHNLGPRTVLVKGGDLPD--SSDAVDIFFDGEDFHELRSSRVNT-RNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 172 ~~~~~~~a~~l~~~g~~~Vvvt~g~~g~--~~~~~~~~~~~~~~~~~~~~~~~~-~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
.++..+++++++++|++.|+||+|+.+. .+....+++++++.+.++.++++. ++++||||+|+|+|+++|++|++++
T Consensus 160 ~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~a~l~~g~~~~ 239 (286)
T PRK05756 160 LEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFLARLLQGGSLE 239 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHHHHHhcCCCHH
Confidence 7788899999999999999999987531 111123456666666677677776 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccc
Q 010244 249 SAVKVAKCFVETALDYSKD 267 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~~~~ 267 (514)
+|+++|+.+++.+|+.+.+
T Consensus 240 ~al~~A~~~~~~~i~~~~~ 258 (286)
T PRK05756 240 EALEHTTAAVYEVMARTKE 258 (286)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 27
>PRK07105 pyridoxamine kinase; Validated
Probab=100.00 E-value=6.4e-33 Score=273.04 Aligned_cols=244 Identities=21% Similarity=0.332 Sum_probs=193.3
Q ss_pred CCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHc-----CCCcCE
Q 010244 18 MKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLS-----DMQVDV 92 (514)
Q Consensus 18 ~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~~~ 92 (514)
-.+++||++.+.+++||+|++||+++++++|+++++++|++++||+.++..+...+. .++++.+++ +.++++
T Consensus 2 ~~~~~vl~~~d~~~~G~aG~~adi~~~~~~g~~~~~v~T~~~~q~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a 78 (284)
T PRK07105 2 NPVKRVAAIHDLSGFGRVALTASIPIMSSMGLQVCPLPTALLSSHTGGFQNPSIIDL---TDGMQAFLTHWKSLNLKFDA 78 (284)
T ss_pred CCCCeEEEEecccccceehHhhHHHHHHHcCCcceeccceEeccCCCCCCCCeEeec---HHHHHHHHHHHHHcCCccCE
Confidence 346799999999999999999999999999999999999999999987776554442 333444433 568999
Q ss_pred EEEcccCCHHHHHHHHHHHhcCC--CCcEEEecceecCCCCC-CCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCC
Q 010244 93 VKTGMLPSTDLVKVLLQSLSEFP--VRALVVDPVMVSTSGDV-LAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQV 169 (514)
Q Consensus 93 i~~G~~~~~~~~~~~~~~~~~~~--~~~ivlDPv~~~~~g~~-~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~ 169 (514)
|++||+.+.+.++.+.+++++.+ ..++|+||||++.++.. .++++..+.++ ++++++|++|||..|++.|+| .+.
T Consensus 79 ik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~-~ll~~advitpN~~Ea~~L~g-~~~ 156 (284)
T PRK07105 79 IYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMR-KLIQKADVITPNLTEACLLLD-KPY 156 (284)
T ss_pred EEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHH-HHHhhCCEecCCHHHHHHHcC-CCc
Confidence 99999999999999999886542 23599999998543311 23566666676 799999999999999999998 432
Q ss_pred ----CCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCC--eEEEEeecccCCCCCCCCcchHHHHHHHHHHc
Q 010244 170 ----VTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGE--DFHELRSSRVNTRNTHGTGCTLASCIAAELAK 243 (514)
Q Consensus 170 ----~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~ 243 (514)
.+.+++.++++++.+.|++.|++|+++.+++..+ .++++++ ..+.++.+.++ .+++||||+|+|+|++.|++
T Consensus 157 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g-~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~aa~~~~l~~ 234 (284)
T PRK07105 157 LEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIG-VAYYDRATDRFWKVFCKYIP-AHYPGTGDIFTSVITGSLLQ 234 (284)
T ss_pred CcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEE-EEEEeCCCCeEEEEeecccC-CCcCChhHHHHHHHHHHHhC
Confidence 2467788899999999999999999664311112 4555532 34455555555 68999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccc
Q 010244 244 GSPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 244 g~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
|+++++|+++|..+++.+|+.+.+.
T Consensus 235 g~~l~~av~~A~~~~~~~i~~~~~~ 259 (284)
T PRK07105 235 GDSLPIALDRAVQFIEKGIRATLGL 259 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 28
>PRK07695 transcriptional regulator TenI; Provisional
Probab=100.00 E-value=1.2e-32 Score=256.65 Aligned_cols=198 Identities=30% Similarity=0.463 Sum_probs=180.7
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCe
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADG 381 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~g 381 (514)
+.+|+|||+...+ +.+.+.++ ++++|+++||||+|+.+.+++.++++.+.+.+.. +..+++|++++++.+.+++|
T Consensus 2 ~~l~~it~~~~~~---~~~~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~-~~~liin~~~~la~~~~~~g 76 (201)
T PRK07695 2 NELHVISNGHQSF---EELVAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLKKGVP-ASKLIINDRVDIALLLNIHR 76 (201)
T ss_pred cEEEEEECCcccc---chHHHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCC-CCeEEEECHHHHHHHcCCCE
Confidence 6899999987654 45666665 8999999999999999999999999998876655 56899999999999999999
Q ss_pred EEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEE
Q 010244 382 VHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAI 461 (514)
Q Consensus 382 vhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~ 461 (514)
||+++.+.+....|+.. ++.++|+||||.+++.++.+.|+||+++||+|+|.+|++.++.|++.++++++.+++||+|+
T Consensus 77 vHl~~~~~~~~~~r~~~-~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~ 155 (201)
T PRK07695 77 VQLGYRSFSVRSVREKF-PYLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAI 155 (201)
T ss_pred EEeCcccCCHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999988877787766 58899999999999999999999999999999999998877789999999999889999999
Q ss_pred CCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 462 GGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 462 GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
|||+++|+.+++++|++ ||+++|+||+++||.+.++++++.+++
T Consensus 156 GGI~~~~~~~~~~~Ga~---gvav~s~i~~~~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 156 GGITPENTRDVLAAGVS---GIAVMSGIFSSANPYSKAKRYAESIKK 199 (201)
T ss_pred cCCCHHHHHHHHHcCCC---EEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence 99999999999999999 999999999999999999999988765
No 29
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=100.00 E-value=2.5e-32 Score=299.60 Aligned_cols=205 Identities=31% Similarity=0.521 Sum_probs=187.6
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCe
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADG 381 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~g 381 (514)
+++|+|||+..+. ..+.+.+.+++++++|+++||||+|+.+..++.++++++.++|+++|++++||+++++|.++|+|
T Consensus 4 ~~ly~It~~~~~~-~~~~~~~~l~~~l~~g~~~iqlR~K~~~~~~~~~~a~~l~~l~~~~~~~liind~~~la~~~~~d- 81 (755)
T PRK09517 4 FSLYLVTDPVLGG-GPEKVAGIVDSAISGGVSVVQLRDKNAGVEDVRAAAKELKELCDARGVALVVNDRLDVAVELGLH- 81 (755)
T ss_pred eEEEEEECCcccc-CcccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC-
Confidence 5799999986543 11468889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhh----h---CCCcEEEeccccCCCCCCCC-ccCCHHHHHHHHHc
Q 010244 382 VHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAW----I---DGANYIGCGGVYPTNTKANN-LTVGLDGLKTVCLA 453 (514)
Q Consensus 382 vhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~----~---~g~d~v~~~~vf~t~~k~~~-~~~g~~~l~~~~~~ 453 (514)
||+++.+++....|+.++++.++|+||||.+|+..+. . .|+||+++||+|+|.|||+. +++|++.++++++.
T Consensus 82 VHlg~~dl~~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~ 161 (755)
T PRK09517 82 VHIGQGDTPYTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAV 161 (755)
T ss_pred eecCCCcCCHHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHh
Confidence 9999999988899998888999999999999986642 2 25999999999999999986 46899999999988
Q ss_pred CC---CCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHhh
Q 010244 454 SK---LPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAVQ 511 (514)
Q Consensus 454 ~~---~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~~ 511 (514)
++ +||+|+|||+++|+.+++++|++ |||++|+||+++||.++++++++.++...+
T Consensus 162 ~~~~~iPv~AiGGI~~~~~~~~~~~Ga~---giAvisai~~a~d~~~a~~~l~~~~~~~~~ 219 (755)
T PRK09517 162 AQDHGIASVAIGGVGLRNAAELAATGID---GLCVVSAIMAAANPAAAARELRTAFQPTRS 219 (755)
T ss_pred cCcCCCCEEEECCCCHHHHHHHHHcCCC---EEEEehHhhCCCCHHHHHHHHHHHHHHhhc
Confidence 87 99999999999999999999999 999999999999999999999999987643
No 30
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-32 Score=254.52 Aligned_cols=242 Identities=24% Similarity=0.305 Sum_probs=204.0
Q ss_pred CeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeee--EecCHHHHHHHHHHHHc--C-CCcCEEEE
Q 010244 21 PHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGV--NIVPEDFVAAQLKSVLS--D-MQVDVVKT 95 (514)
Q Consensus 21 ~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~--~~~~~~~~~~~l~~l~~--~-~~~~~i~~ 95 (514)
++||+|+++..+|.+|+.|+++.|+.+|+.++.++|++.+ |+++|... ..++++.+.+.++.+.+ . .++|+|++
T Consensus 1 k~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fS-nHtgyg~~~g~v~~~e~l~~~l~~l~~~~~~~~~davlt 79 (281)
T COG2240 1 KRILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFS-NHTGYGKWTGIVMPPEQLADLLNGLEAIDKLGECDAVLT 79 (281)
T ss_pred CcEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEec-CCCCCCCCCCcCCCHHHHHHHHHHHHhcccccccCEEEE
Confidence 4799999999999999999999999999999999998754 66787754 46788888888888866 2 37999999
Q ss_pred cccCCHHHHHHHHHHHhcCCC--C--cEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCC
Q 010244 96 GMLPSTDLVKVLLQSLSEFPV--R--ALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVT 171 (514)
Q Consensus 96 G~~~~~~~~~~~~~~~~~~~~--~--~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~ 171 (514)
||+++.++++.+.+++++.+. + .++|||||++.+ +.|+.++....++++++|.+|++|||.+|++.|+| .+.++
T Consensus 80 GYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~g-glYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg-~~~~~ 157 (281)
T COG2240 80 GYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPG-GLYVAPEVAEAYRDELLPLADIITPNIFELEILTG-KPLNT 157 (281)
T ss_pred ccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCC-ceeeccchHHHHHHhhcchhhEeCCCHHHHHHHhC-CCCCC
Confidence 999999999999998876432 2 389999999655 78999998888888899999999999999999998 77889
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCe---EEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 172 VADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGED---FHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 172 ~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
.++..++++.|.+.|++.|+||+-...+. ....+++.... ..++. +.++. .+.|+||.|+|.|++.+.+|.++.
T Consensus 158 ~~da~~aa~~L~~~gp~~vlVTS~~~~~~-~~~~~~~~~~~~~~~~h~~-~~v~~-~~~GtGDL~sallla~lL~g~~~~ 234 (281)
T COG2240 158 LDDAVKAARKLGADGPKIVLVTSLSRAGM-STGNFEMLGKSAELAWHIS-PLVPF-IPNGTGDLFSALLLARLLEGLSLT 234 (281)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecccccCC-CCceEEEeccchhhhhhhh-hcCCC-CCCCchHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999998775211 22245554332 23333 45554 589999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccc
Q 010244 249 SAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~~~~~ 268 (514)
+|+..+..+++.+++.+.+.
T Consensus 235 ~al~~~~~~V~evl~~T~~~ 254 (281)
T COG2240 235 QALERATAAVYEVLQETQKL 254 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998865
No 31
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=100.00 E-value=1.5e-31 Score=252.32 Aligned_cols=204 Identities=50% Similarity=0.759 Sum_probs=187.1
Q ss_pred CceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCC
Q 010244 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDAD 380 (514)
Q Consensus 301 ~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~ 380 (514)
-+++|+|||+..+. .+.+.+.++.++++|++++|+|.++.+..++.+.++++..+|+.++++++++++++.+.++|++
T Consensus 6 ~~~~~~it~~~~~~--~~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~gad 83 (212)
T PRK00043 6 LLRLYLITDSRDDS--GRDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVNDRVDLALAVGAD 83 (212)
T ss_pred CCCEEEEECCcccc--cccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCC
Confidence 46799999987653 2568889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCc-cCCHHHHHHHHHcCC-CCE
Q 010244 381 GVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNL-TVGLDGLKTVCLASK-LPV 458 (514)
Q Consensus 381 gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~-~~g~~~l~~~~~~~~-~pv 458 (514)
|+|++..+......++.++.+.++|++|||++|+.++.+.|+|||++||+|||.+|++.. ..|++.++++++.++ +||
T Consensus 84 ~vh~~~~~~~~~~~~~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 163 (212)
T PRK00043 84 GVHLGQDDLPVADARALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPI 163 (212)
T ss_pred EEecCcccCCHHHHHHHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCE
Confidence 999999887777778777889999999999999999999999999999999999999864 468999999999886 999
Q ss_pred EEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 459 VAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 459 ~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
+|+|||+++|+.+++++|++ ||++||+||+++||.+.++.+++.+++.
T Consensus 164 ~a~GGI~~~~i~~~~~~Ga~---gv~~gs~i~~~~d~~~~~~~l~~~~~~~ 211 (212)
T PRK00043 164 VAIGGITPENAPEVLEAGAD---GVAVVSAITGAEDPEAAARALLAAFRAA 211 (212)
T ss_pred EEECCcCHHHHHHHHHcCCC---EEEEeHHhhcCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999 9999999999999999999999887764
No 32
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=99.97 E-value=1.8e-29 Score=235.04 Aligned_cols=194 Identities=48% Similarity=0.754 Sum_probs=180.1
Q ss_pred EEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEE
Q 010244 304 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVH 383 (514)
Q Consensus 304 ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvh 383 (514)
+|+|||+..+. .++.+.+++++++|++++|+|.++.+..+..+.++++.+.|..++++++++++++++.++|++|+|
T Consensus 1 l~~it~~~~~~---~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~a~~~g~~~vh 77 (196)
T cd00564 1 LYLITDRRLDG---EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIINDRVDLALAVGADGVH 77 (196)
T ss_pred CEEEeCCcccc---chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeChHHHHHHcCCCEEe
Confidence 69999997653 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCC-ccCCHHHHHHHHHcCCCCEEEEC
Q 010244 384 LGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANN-LTVGLDGLKTVCLASKLPVVAIG 462 (514)
Q Consensus 384 l~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~-~~~g~~~l~~~~~~~~~pv~a~G 462 (514)
++..+......++..+.+..+|++|||++|+.++.+.|+||++++|+||+.+|++. .+.+++.++++++..++||+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~G 157 (196)
T cd00564 78 LGQDDLPVAEARALLGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIG 157 (196)
T ss_pred cCcccCCHHHHHHHcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 99877777777777778999999999999999999999999999999999999886 77899999999988899999999
Q ss_pred CCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 463 GIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 463 Gi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
||+++|+.+++++|++ |+++||+||+++||.+.+++++
T Consensus 158 Gi~~~~i~~~~~~Ga~---~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 158 GITPENAAEVLAAGAD---GVAVISAITGADDPAAAARELL 195 (196)
T ss_pred CCCHHHHHHHHHcCCC---EEEEehHhhcCCCHHHHHHHHh
Confidence 9999999999999999 9999999999999999888775
No 33
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.97 E-value=4e-29 Score=246.42 Aligned_cols=247 Identities=24% Similarity=0.284 Sum_probs=197.8
Q ss_pred CCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeee--EecCHHHHHHHHHHHHc--C-CCcCEEE
Q 010244 20 IPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGV--NIVPEDFVAAQLKSVLS--D-MQVDVVK 94 (514)
Q Consensus 20 ~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~--~~~~~~~~~~~l~~l~~--~-~~~~~i~ 94 (514)
+++||+|.+...+|.+|+.+++++|+++|++++.++|++++ |+.++..+ ..++.+.+.+.++.+.+ . .++|+|+
T Consensus 1 ~~~vl~i~~~~~~g~~~~~~~~~~l~~~g~~~~~~pT~~~s-~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 79 (286)
T TIGR00687 1 MKNVLSIQSHVVYGHVGNRAATFPLQRLGFEVWAVNTVQFS-NHTGYGKWTGQVLPPDELTELVDGLAAINKLNQCDAVL 79 (286)
T ss_pred CCeEEEEcCceecccccCchHHHHHHHcCCcceeeCcEEcC-CCCCCCCCcCeECCHHHHHHHHHHHHhcCccccCCEEE
Confidence 46899999999999999999999999999999999999887 55566644 36777777777777632 1 2799999
Q ss_pred EcccCCHHHHHHHHHHHhcC---C-CCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCC
Q 010244 95 TGMLPSTDLVKVLLQSLSEF---P-VRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVV 170 (514)
Q Consensus 95 ~G~~~~~~~~~~~~~~~~~~---~-~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~ 170 (514)
+|++++.+..+.+.+++++. + ...+|+||||++.++..+.+++..+.+++++++++|+++||..|++.|+| .+..
T Consensus 80 ~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~~L~g-~~~~ 158 (286)
T TIGR00687 80 SGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELELLTG-RKIN 158 (286)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHHHHhC-CCcC
Confidence 99999988777777777542 2 23489999999776655667777778877899999999999999999998 5556
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEe-cccCCCC--CCceEEEEeCCeEEEEeecccC-CCCCCCCcchHHHHHHHHHHcCCC
Q 010244 171 TVADMCSAAKLLHNLGPRTVLVK-GGDLPDS--SDAVDIFFDGEDFHELRSSRVN-TRNTHGTGCTLASCIAAELAKGSP 246 (514)
Q Consensus 171 ~~~~~~~~a~~l~~~g~~~Vvvt-~g~~g~~--~~~~~~~~~~~~~~~~~~~~~~-~~d~~GaGD~f~a~i~~~l~~g~~ 246 (514)
+.++..+++++++++|++.|++| .+..|.. .....+++.+++.++++.+..+ .+|++||||+|+|+|+++|++|++
T Consensus 159 ~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~~l~~l~~g~~ 238 (286)
T TIGR00687 159 TVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAALLLATLLHGNS 238 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHHHHHHHhcCCC
Confidence 67788889999999999999999 4543310 0111244455555666656666 579999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 010244 247 MLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 247 l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
+++|+++|+++++.+++.+.+.
T Consensus 239 ~~~al~~A~~~v~~~l~~t~~~ 260 (286)
T TIGR00687 239 LKEALEKTVSAVYHVLVTTIAL 260 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999988644
No 34
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=99.97 E-value=2e-29 Score=230.03 Aligned_cols=246 Identities=23% Similarity=0.286 Sum_probs=206.4
Q ss_pred CCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeee--EecCHHHHHHHHHHHHcC--CCcCEEE
Q 010244 19 KIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGV--NIVPEDFVAAQLKSVLSD--MQVDVVK 94 (514)
Q Consensus 19 ~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~--~~~~~~~~~~~l~~l~~~--~~~~~i~ 94 (514)
+.+|||+|+++...|.+|+.++...|+-+|+....+.|+. .+|+.+|..+ ....++.+.+.++.+..+ ..+++++
T Consensus 8 ~~kRVLSIQShVvhGYVGNkaAtFPLQllGwdVD~insVq-FSNHtGY~~~kG~~~~~~eL~dL~egl~~nn~~~Y~~vL 86 (308)
T KOG2599|consen 8 TTKRVLSIQSHVVHGYVGNKAATFPLQLLGWDVDVINSVQ-FSNHTGYAHVKGQVLNEEELEDLYEGLLLNNLNKYDAVL 86 (308)
T ss_pred CCccEEEEeeeeeeeeccccccccchhhhcccccccccee-eccccCCccccccccCHHHHHHHHHHHhhccccccceee
Confidence 5789999999999999999999999999999999988865 5688898866 356777777788877654 3799999
Q ss_pred EcccCCHHHHHHHHHHHhcCC----CCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCC
Q 010244 95 TGMLPSTDLVKVLLQSLSEFP----VRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVV 170 (514)
Q Consensus 95 ~G~~~~~~~~~~~~~~~~~~~----~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~ 170 (514)
+||.++...++.+.+.+++.+ ...+||||||+ +.|..|++++.+..+++.+.+.+|+||||.+|++.|+| ..+.
T Consensus 87 TGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmG-DnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLtg-~~I~ 164 (308)
T KOG2599|consen 87 TGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMG-DNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILTG-MEIR 164 (308)
T ss_pred eeccCChhHHHHHHHHHHHHHhcCCCeEEEeCcccc-CCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhcC-Ceec
Confidence 999999988888887776532 22489999999 68999999999999998888899999999999999998 8899
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEE---eCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC---
Q 010244 171 TVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFF---DGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG--- 244 (514)
Q Consensus 171 ~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g--- 244 (514)
+.++..++.+.|+++|++.||||+...+......-+++ .+.+.+.+..++++. -++|+||.|+|.+++.+..-
T Consensus 165 t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~-~FtGTGDLfsaLLla~~~~~~~~ 243 (308)
T KOG2599|consen 165 TEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDG-VFTGTGDLFSALLLAWLHESPDN 243 (308)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccce-EEecccHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999887663322111222 233566777777776 48999999999999999876
Q ss_pred CCHHHHHHHHHHHHHHHHhccccc
Q 010244 245 SPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
.++..|++.+...++..|+.+...
T Consensus 244 ~~l~~a~e~~ls~~~~viqkT~~~ 267 (308)
T KOG2599|consen 244 DDLSKAVEQVLSSVQAVIQKTLDY 267 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 35
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.96 E-value=2.6e-28 Score=241.26 Aligned_cols=243 Identities=21% Similarity=0.235 Sum_probs=195.3
Q ss_pred CCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCee--eeEecCHHHHHHHHHHHHc---CCCcCEEE
Q 010244 20 IPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQ--GVNIVPEDFVAAQLKSVLS---DMQVDVVK 94 (514)
Q Consensus 20 ~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~--~~~~~~~~~~~~~l~~l~~---~~~~~~i~ 94 (514)
+++||+|+|++++|++|+.+++..++.+|+..+.++|+..+ |+.++. ....++++.+.++++.+.+ ..++++|+
T Consensus 4 ~~~vl~i~~~~~~G~~G~~~~~~~l~~~g~~~~~~~tv~ls-~~~~~~~~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~ 82 (296)
T PTZ00344 4 EKKVLSIQSHVTHGYVGNRAATFPLQLLGFDVDFVNTVQLS-NHTGYPVIKGHRLDLNELITLMDGLRANNLLSDYTYVL 82 (296)
T ss_pred CCeEEEEcceeecccccchhHHHHHHHcCCcceeeccEecC-CCCCCCCccCeeCCHHHHHHHHHHHHhcCCcccCCEEE
Confidence 57999999999999999999999999999999999998766 555643 3346788888899988866 33689999
Q ss_pred EcccCCHHHHHHHHHHHhcC---CC-CcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCC
Q 010244 95 TGMLPSTDLVKVLLQSLSEF---PV-RALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVV 170 (514)
Q Consensus 95 ~G~~~~~~~~~~~~~~~~~~---~~-~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~ 170 (514)
+|++++.+.++.+.+++++. +. .++|+||||+ +.|..+..++..+.++ .+++++|+++||..|++.|+| .+..
T Consensus 83 sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~-~~g~l~~~~~~~~~~~-~ll~~~dii~pN~~E~~~L~g-~~~~ 159 (296)
T PTZ00344 83 TGYINSADILREVLATVKEIKELRPKLIFLCDPVMG-DDGKLYVKEEVVDAYR-ELIPYADVITPNQFEASLLSG-VEVK 159 (296)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccc-cCCceEeCHHHHHHHH-HHhhhCCEEeCCHHHHHHHhC-CCCC
Confidence 99999999999999988642 21 2499999997 5666666666666666 889999999999999999998 5555
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEecccCCCCCCce-EEEEe--C----CeEEEEeecccCCCCCCCCcchHHHHHHHHHHc
Q 010244 171 TVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAV-DIFFD--G----EDFHELRSSRVNTRNTHGTGCTLASCIAAELAK 243 (514)
Q Consensus 171 ~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~-~~~~~--~----~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~ 243 (514)
+.++..++++++.+.|++.|++|+++.+.+.... .++.. . ++.+.+..++++ .+++||||+|+|+|++.+.+
T Consensus 160 ~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~~a~l~~ 238 (296)
T PTZ00344 160 DLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALLLAFSHQ 238 (296)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHHHHHHhc
Confidence 6677888899998889999999987644221111 12221 1 234556666666 47799999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccccc
Q 010244 244 GSPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 244 g~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
| ++.+|+++|.++++.+|+.+.+.
T Consensus 239 g-~~~~a~~~A~a~~~~~i~~~~~~ 262 (296)
T PTZ00344 239 H-PMDLAVGKAMGVLQDIIKATRES 262 (296)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 99999999999999999998764
No 36
>PLN02978 pyridoxal kinase
Probab=99.96 E-value=5.4e-28 Score=239.43 Aligned_cols=247 Identities=19% Similarity=0.259 Sum_probs=196.9
Q ss_pred cCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeee--EecCHHHHHHHHHHHHc-C-CCcC
Q 010244 16 YKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGV--NIVPEDFVAAQLKSVLS-D-MQVD 91 (514)
Q Consensus 16 ~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~--~~~~~~~~~~~l~~l~~-~-~~~~ 91 (514)
-.+.+++||+|+++|.+|..|+.+...+|+++|++++.++|++.+ |+++|..+ ..++++.+...++.+.. + ..++
T Consensus 10 ~~~~~~~vl~iqs~~~~g~~g~~~a~~pl~~~g~~v~~lpTv~lS-nhtgy~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (308)
T PLN02978 10 LPSSTGRVLSIQSHTVHGYVGNKSAVFPLQLLGFDVDPINSVQFS-NHTGYPTFKGQVLDGEQLWALIEGLEANGLLFYT 88 (308)
T ss_pred cCCCCCcEEEEeCeeeecCCCceehHhhHHHcCCeeeeeccEeec-CCCCCCCceeeeCCHHHHHHHHHHHHHcCCcccC
Confidence 345568999999999999999999999999999999999999876 44577654 46666666666666543 2 2689
Q ss_pred EEEEcccCCHHHHHHHHHHHhcCC----CCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCC
Q 010244 92 VVKTGMLPSTDLVKVLLQSLSEFP----VRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGM 167 (514)
Q Consensus 92 ~i~~G~~~~~~~~~~~~~~~~~~~----~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~ 167 (514)
+|++||+++.++++.+.+++++.+ ..++|+||||+ ++|..+.+++..+.+++.+++.+|++|||..|++.|+| .
T Consensus 89 ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~-d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g-~ 166 (308)
T PLN02978 89 HLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLG-DEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTG-I 166 (308)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCccc-CCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhC-C
Confidence 999999999999888888876432 22489999998 46777777777777876799999999999999999998 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEe------CCeEEEEeecccCCCCCCCCcchHHHHHHHHH
Q 010244 168 QVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD------GEDFHELRSSRVNTRNTHGTGCTLASCIAAEL 241 (514)
Q Consensus 168 ~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l 241 (514)
+..+.+++.++++++.+.|++.|+||+.+.++ ....+.+. .++.+.+..++++.. ++|+||+|+|++++.+
T Consensus 167 ~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa~l 243 (308)
T PLN02978 167 RIVTEEDAREACAILHAAGPSKVVITSIDIDG--KLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLGWS 243 (308)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEEecCCC--CEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHHHH
Confidence 55566778889999999999999999976431 11111111 124566777777754 6999999999999999
Q ss_pred HcC-CCHHHHHHHHHHHHHHHHhccccc
Q 010244 242 AKG-SPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 242 ~~g-~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
++| .++++|++.|..+++.+|+.+.+.
T Consensus 244 ~~g~~~l~~A~~~A~~~v~~~i~~t~~~ 271 (308)
T PLN02978 244 HKYPDNLDKAAELAVSSLQAVLRRTLAD 271 (308)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 998 899999999999999999998765
No 37
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.96 E-value=7.4e-29 Score=240.39 Aligned_cols=228 Identities=25% Similarity=0.205 Sum_probs=169.8
Q ss_pred cccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHH-----HHHH-cC
Q 010244 14 EQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQL-----KSVL-SD 87 (514)
Q Consensus 14 ~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l-----~~l~-~~ 87 (514)
++||+++|+||+|+||++|+||++++|+.++++ |.+++|+++.++... .....+++++..++ +.+. ..
T Consensus 2 ~~hK~~~g~vl~i~Gs~~~~GA~~la~~~a~~~----G~g~vt~~~~~~~~~--~~~~~~pe~i~~~~~~~~~~~~~~~~ 75 (254)
T cd01171 2 DSHKGSRGRVLVIGGSRGYTGAAYLAALAALRA----GAGLVTVATPPEAAA--VIKSYSPELMVHPLLETDIEELLELL 75 (254)
T ss_pred CCCCcCCCeEEEEeCCCCCccHHHHHHHHHHHH----ccCEEEEEECHhhHH--HHHhcCceeeEecccccchHHHHhhh
Confidence 689999999999999999999999999999995 889999988777432 12222222222221 1111 12
Q ss_pred CCcCEEEEcc-cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 010244 88 MQVDVVKTGM-LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGG 166 (514)
Q Consensus 88 ~~~~~i~~G~-~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (514)
.+++++++|+ +++.+....+++.+++++.+ +|+||. +..+..... . . .+.+.+++||||..|+++|+|
T Consensus 76 ~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~p-vVlDa~-----~~~~~~~~~-~-~--~~~~~~~iltPn~~E~~~L~g- 144 (254)
T cd01171 76 ERADAVVIGPGLGRDEEAAEILEKALAKDKP-LVLDAD-----ALNLLADEP-S-L--IKRYGPVVLTPHPGEFARLLG- 144 (254)
T ss_pred ccCCEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEcH-----HHHHhhcCh-h-h--hccCCCEEECCCHHHHHHHhC-
Confidence 3689999999 55557788888888877655 999962 211111110 0 0 245778999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCC
Q 010244 167 MQVVT-VADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGS 245 (514)
Q Consensus 167 ~~~~~-~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~ 245 (514)
.+..+ .++..++++++.+++...|++||.. ++++++++.++++..+.+.++++|+||+|+|++++++++|+
T Consensus 145 ~~~~~~~~~~~~~a~~l~~~~~~~vvlkG~~--------~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~ 216 (254)
T cd01171 145 ALVEEIQADRLAAAREAAAKLGATVVLKGAV--------TVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGL 216 (254)
T ss_pred CChhhhhhHHHHHHHHHHHHcCcEEEEcCCC--------CEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCC
Confidence 43322 3456788999988887788888743 67777655567777788888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccc
Q 010244 246 PMLSAVKVAKCFVETALDYSK 266 (514)
Q Consensus 246 ~l~~A~~~A~~~~~~~i~~~~ 266 (514)
++.+|++.|+.+...+.+...
T Consensus 217 ~~~eA~~~A~~~~~~a~~~~~ 237 (254)
T cd01171 217 SPLEAAALAVYLHGLAGDLAA 237 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888877554
No 38
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.94 E-value=7.2e-27 Score=213.55 Aligned_cols=162 Identities=21% Similarity=0.323 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
++..+.+++++++|++++|+|.|+.+..++++.++++.+.|.....+++++|++++|.++||+|+|+|+.+.+....++.
T Consensus 24 ~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~~~~~ 103 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIEAAVA 103 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHHHHHH
Confidence 57889999999999999999999999999999998888888666778999999999999999999999999888888888
Q ss_pred cCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcccHHHHHHCC
Q 010244 398 LGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIG 476 (514)
Q Consensus 398 ~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~~~~~~~~~G 476 (514)
++...++| |||++|+.+|.+.|+||+.+ |||. +..|+++++.+++.+ ++|++|+|||+++|+.+++++|
T Consensus 104 ~~~~~i~G--~~t~~e~~~A~~~Gadyv~~---Fpt~-----~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG 173 (187)
T PRK07455 104 QDIPIIPG--ALTPTEIVTAWQAGASCVKV---FPVQ-----AVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG 173 (187)
T ss_pred cCCCEEcC--cCCHHHHHHHHHCCCCEEEE---CcCC-----cccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC
Confidence 88888889 99999999999999999954 9973 246899999999999 6999999999999999999999
Q ss_pred CCCCceEEEeecccCC
Q 010244 477 VSNLKGVAVVSALFDR 492 (514)
Q Consensus 477 a~~~~gva~~~~i~~~ 492 (514)
++ ++|++|+|+..
T Consensus 174 a~---~vav~s~i~~~ 186 (187)
T PRK07455 174 AI---AVGLSGQLFPK 186 (187)
T ss_pred Ce---EEEEehhcccC
Confidence 99 99999999964
No 39
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.94 E-value=3.9e-26 Score=223.19 Aligned_cols=227 Identities=23% Similarity=0.186 Sum_probs=163.7
Q ss_pred cccccccccccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHH-------H
Q 010244 6 GAASATTTEQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFV-------A 78 (514)
Q Consensus 6 ~~~~~r~~~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~-------~ 78 (514)
-..|+|..++||+++|+||+|+||++|+|+++++|+++++. +++++|+.+.+|... .+....++++ .
T Consensus 10 ~~~p~~~~~~~K~~~G~vliiaGs~~~~GA~ila~l~~~~~----g~~~v~~~~~~~~~~--~i~~~~pe~~~~~~~~~~ 83 (272)
T TIGR00196 10 LTLPLRDPNSHKGQYGRVLIIGGSDDYSGAPLLAALAALRA----GAGLVTVAAPENVIT--LINSVSPELIVHRLGWKV 83 (272)
T ss_pred HhCCCCCCCCCCCCCCeEEEEeCCCCCCcHHHHHHHHHHHh----CCCeEEEEEchhhHH--HHhhcCCEEEEecchhhH
Confidence 34689999999999999999999999999999999999999 888888887765311 1111222211 1
Q ss_pred HHHHHHHcCCCcCEEEEcc-cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCH
Q 010244 79 AQLKSVLSDMQVDVVKTGM-LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNV 157 (514)
Q Consensus 79 ~~l~~l~~~~~~~~i~~G~-~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~ 157 (514)
+.++.+++ +++++++|+ +++.+.+..+.+.+++++.+ +|+||. |..+. .... ...+.+++||||.
T Consensus 84 ~~~~~~~~--~~davvig~Gl~~~~~~~~l~~~~~~~~~p-vVlDa~-----g~~l~-----~~~~-~~~~~~~vItPN~ 149 (272)
T TIGR00196 84 DEDEELLE--RYDVVVIGPGLGQDPSFKKAVEEVLELDKP-VVLDAD-----ALNLL-----TYDK-PKREGEVILTPHP 149 (272)
T ss_pred HHHHhhhc--cCCEEEEcCCCCCCHHHHHHHHHHHhcCCC-EEEEhH-----HHHHH-----hhcc-cccCCCEEECCCH
Confidence 22233322 468888887 55555577788888877665 999962 21111 1110 1134679999999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHH
Q 010244 158 KEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCI 237 (514)
Q Consensus 158 ~E~~~L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i 237 (514)
.|+++|+| ....+.++..++++++.+++...|++||.+ ++++++++.+++...+.+.++++|+||+|+|++
T Consensus 150 ~El~~L~g-~~~~~~~~~~~aa~~l~~~~~~vVv~kG~~--------~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~i 220 (272)
T TIGR00196 150 GEFKRLLG-LVNEIQGDRLEAAQDIAQKLQAVVVLKGAA--------DVIAAPDGDLWINKTGNAALAKGGTGDVLAGLI 220 (272)
T ss_pred HHHHHHhC-CchhhhhhHHHHHHHHHHHhCCEEEEcCCC--------CEEEcCCCeEEEECCCCCccCCCCchHHHHHHH
Confidence 99999998 555556788899999988877777777766 456655443445556667788999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHH
Q 010244 238 AAELAKGSPMLSAVKVAKCFVETA 261 (514)
Q Consensus 238 ~~~l~~g~~l~~A~~~A~~~~~~~ 261 (514)
++++++|.++.+|+..|+.+-..+
T Consensus 221 aa~la~g~~~~~A~~~a~~~~~~a 244 (272)
T TIGR00196 221 GGLLAQNLDPFDAACNAAFAHGLA 244 (272)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999998885543333
No 40
>PLN02334 ribulose-phosphate 3-epimerase
Probab=99.93 E-value=7.1e-26 Score=215.16 Aligned_cols=201 Identities=17% Similarity=0.151 Sum_probs=170.9
Q ss_pred EEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCC--CHHHHH--HHHHHHHHHHhhc-CceEEE---cCcHHHHHh
Q 010244 305 YAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDA--DTRGFL--EAAKACLQICCVH-GVPLLI---NDRIDIALA 376 (514)
Q Consensus 305 y~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~--~~~~~~--~~~~~~~~~~~~~-~~~l~v---~~~~~~a~~ 376 (514)
|+|+|+.++. ....+.+.+++++++|++++|+|.++. .+.... +.++.++++|+.+ ++++++ +++++.+.+
T Consensus 8 ~~i~~s~~~~-~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~ 86 (229)
T PLN02334 8 AIIAPSILSA-DFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAK 86 (229)
T ss_pred ceEEeehhhc-CHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHH
Confidence 5688876543 113678899999999999999999988 444433 6788888888777 999999 688999999
Q ss_pred CCCCeE--EeCC--CCCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCC--CcEEEeccccCCCCCCCCccCCHHHHH
Q 010244 377 CDADGV--HLGQ--SDMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDG--ANYIGCGGVYPTNTKANNLTVGLDGLK 448 (514)
Q Consensus 377 ~ga~gv--hl~~--~~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g--~d~v~~~~vf~t~~k~~~~~~g~~~l~ 448 (514)
+|||+| |+++ .+.+...++..++.+..+|.++| |+.|..++...+ +||+++++++||.+++..++.+++.++
T Consensus 87 ~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~ 166 (229)
T PLN02334 87 AGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVR 166 (229)
T ss_pred cCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHH
Confidence 999999 9995 66666778888888999999997 666666555444 999999999999999777778899999
Q ss_pred HHHHcC-CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 449 TVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 449 ~~~~~~-~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
++++.. ++|++++|||+++|+.+++++|++ ++++||+||+++||.+.++++++.+++.
T Consensus 167 ~~~~~~~~~~I~a~GGI~~e~i~~l~~aGad---~vvvgsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 167 ALRKKYPELDIEVDGGVGPSTIDKAAEAGAN---VIVAGSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred HHHHhCCCCcEEEeCCCCHHHHHHHHHcCCC---EEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence 998874 689999999999999999999999 9999999999999999999999988764
No 41
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=99.92 E-value=3.3e-24 Score=198.48 Aligned_cols=170 Identities=21% Similarity=0.287 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCce-------EEEcCcHHHHHhCCCCeEEeCCCCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVP-------LLINDRIDIALACDADGVHLGQSDMP 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~v~~~~~~a~~~ga~gvhl~~~~~~ 390 (514)
++..+.+++++++|++.+|+|.++.+..+ .++.++++|+.+ ++.+++++.+.++||+|+|+|+.+.+
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~~~~~~------~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~ 95 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNSPDPFD------SIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPE 95 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccHHH------HHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 67899999999999999999999987665 456667777654 77889999999999999999999887
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCccc
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISN 468 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~ 468 (514)
....++.. +..++.+|||++|+.+|.+.|+||+. +||+ ..+|+++++++++.+ ++|++|+|||+++|
T Consensus 96 v~~~~~~~--~~~~~~G~~t~~E~~~A~~~Gad~vk---~Fpa------~~~G~~~l~~l~~~~~~~ipvvaiGGI~~~n 164 (206)
T PRK09140 96 VIRRAVAL--GMVVMPGVATPTEAFAALRAGAQALK---LFPA------SQLGPAGIKALRAVLPPDVPVFAVGGVTPEN 164 (206)
T ss_pred HHHHHHHC--CCcEEcccCCHHHHHHHHHcCCCEEE---ECCC------CCCCHHHHHHHHhhcCCCCeEEEECCCCHHH
Confidence 76666654 55556669999999999999999995 5884 347999999999998 49999999999999
Q ss_pred HHHHHHCCCCCCceEEEeecccCC----CCHHHHHHHHHHHHH
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDR----ECILPESKKLHAVLM 507 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~----~~~~~~~~~~~~~~~ 507 (514)
+.+++++|++ +++++|++|++ +++.+.++++++.++
T Consensus 165 ~~~~~~aGa~---~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 165 LAPYLAAGAA---GFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred HHHHHHCCCe---EEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 9999999999 99999999976 778888888877665
No 42
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.89 E-value=9.7e-22 Score=206.25 Aligned_cols=228 Identities=21% Similarity=0.138 Sum_probs=160.4
Q ss_pred cccccccccccccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecC-CC----eeeeEecCHHHHH
Q 010244 4 DCGAASATTTEQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNT-AG----VQGVNIVPEDFVA 78 (514)
Q Consensus 4 ~~~~~~~r~~~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~-~~----~~~~~~~~~~~~~ 78 (514)
+..+.|+|..++||+++|+||+|+||..|.||++++...++++ |++++++.+.... .. .++....+.+ .
T Consensus 238 ~~~~lp~r~~~shKg~~G~vliigGs~~~~GA~~Laa~aAlr~----GaGlv~~~~~~~~~~~~~~~~Pe~~~~~~~--~ 311 (508)
T PRK10565 238 LSQWLKPRRPTSHKGDHGRLLIIGGDHGTAGAIRMAGEAALRS----GAGLVRVLTRSENIAPLLTARPELMVHELT--P 311 (508)
T ss_pred HHhhcCCCCccCCCCCCCeEEEEECCCCCccHHHHHHHHHHHh----CCCeEEEEeChhhHHHHhhcCceeEEecCC--H
Confidence 3456899999999999999999999999999999999999999 7788887654321 11 1222211110 1
Q ss_pred HHHHHHHcCCCcCEEEEcc--cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHh-hcccceEEcC
Q 010244 79 AQLKSVLSDMQVDVVKTGM--LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLREN-LLPMADIVTP 155 (514)
Q Consensus 79 ~~l~~l~~~~~~~~i~~G~--~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~-ll~~~diitp 155 (514)
+.++.+++. ++++++|+ ..+... ..+.+.+++.+. |+|+|| ++ +..+.+. ......||||
T Consensus 312 ~~~~~~~~~--~~a~viGpGlg~~~~~-~~~~~~~~~~~~-P~VLDA-----da--------L~ll~~~~~~~~~~VLTP 374 (508)
T PRK10565 312 DSLEESLEW--ADVVVIGPGLGQQEWG-KKALQKVENFRK-PMLWDA-----DA--------LNLLAINPDKRHNRVITP 374 (508)
T ss_pred hHHHHHhhc--CCEEEEeCCCCCCHHH-HHHHHHHHhcCC-CEEEEc-----hH--------HHHHhhCccccCCeEECC
Confidence 223333333 45555544 444444 444577766555 499996 22 2222110 0112579999
Q ss_pred CHHHHHHhhCCCCCCC-HHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHH
Q 010244 156 NVKEASALLGGMQVVT-VADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLA 234 (514)
Q Consensus 156 N~~E~~~L~g~~~~~~-~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~ 234 (514)
|..|+++|++ ..... ..+..+.++++.+++...|++||.. ++++++++..+++..+.+.+.++|+||+++
T Consensus 375 h~gE~~rL~~-~~~~~v~~~~~~~a~~~a~~~~~~vvlKG~~--------~iI~~~~~~~~~~~~G~~~ma~~GsGDvLa 445 (508)
T PRK10565 375 HPGEAARLLG-CSVAEIESDRLLSARRLVKRYGGVVVLKGAG--------TVIAAEPDALAIIDVGNAGMASGGMGDVLS 445 (508)
T ss_pred CHHHHHHHhC-CChhhhhhhHHHHHHHHHHHhCCEEEEeCCC--------cEEEcCCceEEEECCCCCCCCCCChHHHHH
Confidence 9999999998 33222 2356678888888877889999987 788876666777777888889999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 010244 235 SCIAAELAKGSPMLSAVKVAKCFVETALD 263 (514)
Q Consensus 235 a~i~~~l~~g~~l~~A~~~A~~~~~~~i~ 263 (514)
|++++++++|.++.+|+..|+..-..+-+
T Consensus 446 GiIaalla~g~~~~~Aa~~a~~lhg~Ag~ 474 (508)
T PRK10565 446 GIIGALLGQKLSPYDAACAGCVAHGAAAD 474 (508)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888876555544
No 43
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.7e-21 Score=187.31 Aligned_cols=232 Identities=23% Similarity=0.201 Sum_probs=160.7
Q ss_pred ccccccccccccccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCC-Ce----eeeE--ecCHH
Q 010244 3 DDCGAASATTTEQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTA-GV----QGVN--IVPED 75 (514)
Q Consensus 3 ~~~~~~~~r~~~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~-~~----~~~~--~~~~~ 75 (514)
|...+.|+|..++|||++|+||+|+|+..|+||+.++.+.++++ |.+++++.+..+.. .+ +... .....
T Consensus 15 ~~~~~~~~r~~~~HKg~~G~vliigG~~~y~GA~~laa~aAl~~----GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~~~ 90 (284)
T COG0063 15 DLIAWLPPRDPDSHKGDYGRVLIIGGSRGYTGAPVLAALAALRA----GAGLVSLASPPEAASALKSYLPELMVIEVEGK 90 (284)
T ss_pred HhhccCCCCCccccCCCCCeEEEEcCCCCCCCHHHHHHHHHHHh----CCCeEEEecchhhhhhHhhcCcceeEeecccc
Confidence 45677899999999999999999999999999999999999999 88888876654311 11 1111 11111
Q ss_pred HHHHHHHHHHcCCCcCEEEEc--ccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcc-cceE
Q 010244 76 FVAAQLKSVLSDMQVDVVKTG--MLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLP-MADI 152 (514)
Q Consensus 76 ~~~~~l~~l~~~~~~~~i~~G--~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~-~~di 152 (514)
....+. .+.+ ++|+|++| +..+.+..+.+.+++.... .|+|+| .|+..++... . .+.+ ...|
T Consensus 91 ~~~~~~-~~~~--~~~avviGpGlG~~~~~~~~~~~~l~~~~-~p~ViD-----ADaL~~la~~-----~-~~~~~~~~V 155 (284)
T COG0063 91 KLLEER-ELVE--RADAVVIGPGLGRDAEGQEALKELLSSDL-KPLVLD-----ADALNLLAEL-----P-DLLDERKVV 155 (284)
T ss_pred hhhHHh-hhhc--cCCEEEECCCCCCCHHHHHHHHHHHhccC-CCEEEe-----CcHHHHHHhC-----c-ccccCCcEE
Confidence 111111 1122 46666666 5556666666666665543 459999 3443222111 1 1111 2379
Q ss_pred EcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcch
Q 010244 153 VTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCT 232 (514)
Q Consensus 153 itpN~~E~~~L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~ 232 (514)
+|||..|+++|++....+...+..++++++.++....||+||.. +++.++++..+++....+.+.+.|+||+
T Consensus 156 lTPH~gEf~rL~g~~~~~~~~~r~~~a~~~a~~~~~vvVLKG~~--------tvI~~~~g~~~~n~~G~~~ma~GGtGDv 227 (284)
T COG0063 156 LTPHPGEFARLLGTEVDEIEVDRLEAARELAAKYGAVVVLKGAV--------TVIADPDGEVFVNPTGNPGMATGGTGDV 227 (284)
T ss_pred ECCCHHHHHHhcCCcccccccchHHHHHHHHHHcCCEEEEeCCC--------CEEEcCCCcEEEcCCCCHHhccCcchHH
Confidence 99999999999984333344567888999999888999999987 8888887677788888888999999999
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHH
Q 010244 233 LASCIAAELAKGSP-MLSAVKVAKCFVETA 261 (514)
Q Consensus 233 f~a~i~~~l~~g~~-l~~A~~~A~~~~~~~ 261 (514)
++|.+.+.|+++.. ..+|+..|+..-..+
T Consensus 228 LaGii~alLAq~~~~~~~Aa~~g~~~h~~a 257 (284)
T COG0063 228 LAGIIGALLAQGPADPLEAAAAGAWLHGRA 257 (284)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999822 345555554443333
No 44
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=99.81 E-value=2.6e-19 Score=170.12 Aligned_cols=213 Identities=28% Similarity=0.261 Sum_probs=144.7
Q ss_pred EEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCe-----ee--eEecCHHHHHHHHHHHHcCCCcCEEEE
Q 010244 23 VLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGV-----QG--VNIVPEDFVAAQLKSVLSDMQVDVVKT 95 (514)
Q Consensus 23 vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~-----~~--~~~~~~~~~~~~l~~l~~~~~~~~i~~ 95 (514)
||+|+||..|.||++++...++++ |.++++..+.++.... ++ +...+.+... .+...++ ++|++++
T Consensus 1 VlvigGS~~~~GA~~Laa~aAlr~----GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~~~~~~-~~~~~~~--~~~av~i 73 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAARAALRS----GAGLVTLATPESIAPVIASYSPEAMVSPLPSDEDV-EILELLE--KADAVVI 73 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHHHHHHT----T-SEEEEEECGCCHHHHHHHTTTSEEEETTHCCHH-HHHHHHC--H-SEEEE
T ss_pred CEEEECCCCCCCHHHHHHHHHHHH----CCCcEEEEEcHHHHHHHHhCCceeEEecccchhhh-hhHhhhc--cCCEEEe
Confidence 799999999999999999999999 8888887764432211 11 1233321111 2222333 4677776
Q ss_pred ccc--CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHh--hcccceEEcCCHHHHHHhhCCCCCCC
Q 010244 96 GML--PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLREN--LLPMADIVTPNVKEASALLGGMQVVT 171 (514)
Q Consensus 96 G~~--~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~--ll~~~diitpN~~E~~~L~g~~~~~~ 171 (514)
|+. .+.+..+ +.+.+.+...+ +|+| .+.+..+.+. ..+...|+|||..|+++|++ .....
T Consensus 74 GPGlg~~~~~~~-~~~~~~~~~~p-~VlD-------------ADaL~~l~~~~~~~~~~~IlTPH~gE~~rL~~-~~~~~ 137 (242)
T PF01256_consen 74 GPGLGRDEETEE-LLEELLESDKP-LVLD-------------ADALNLLAENPKKRNAPVILTPHPGEFARLLG-KSVEI 137 (242)
T ss_dssp -TT-SSSHHHHH-HHHHHHHHCST-EEEE-------------CHHHHCHHHCCCCSSSCEEEE-BHHHHHHHHT-TTCHH
T ss_pred ecCCCCchhhHH-HHHHHHhhcce-EEEe-------------hHHHHHHHhccccCCCCEEECCCHHHHHHHhC-Ccccc
Confidence 664 4444444 44444444444 9999 3445544432 34556799999999999998 33323
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHH
Q 010244 172 VADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAV 251 (514)
Q Consensus 172 ~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~ 251 (514)
.++..+.++++.+....+|++||.. ++++++++..+++..+.+.+.+.|+||+++|.++++++|+.++.+|+
T Consensus 138 ~~~~~~~a~~~a~~~~~~vvLKG~~--------t~I~~p~~~~~~n~~gn~~la~gGsGDvLaGii~~llaq~~~~~~Aa 209 (242)
T PF01256_consen 138 QEDRIEAAREFAKEYGAVVVLKGAV--------TIIASPGGRVYVNPTGNPGLATGGSGDVLAGIIAGLLAQGYDPFEAA 209 (242)
T ss_dssp CCSHHHHHHHHHHHHTSEEEEESTS--------SEEEEETSEEEEE----GGGSSTTHHHHHHHHHHHHHHHTSSHHHHH
T ss_pred hhhHHHHHHHHHhhcCcEEEEeCCC--------cEEEecCcceeEeCCCCCCCCCCCcccHHHHHHHHHHHccCCHHHHH
Confidence 3467788889988767799999988 78888677777888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 010244 252 KVAKCFVETALDYSK 266 (514)
Q Consensus 252 ~~A~~~~~~~i~~~~ 266 (514)
..|+..-..+-+...
T Consensus 210 ~~av~lHg~Ag~~~~ 224 (242)
T PF01256_consen 210 CLAVYLHGRAGDLAA 224 (242)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 988877666555544
No 45
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.81 E-value=1.2e-18 Score=161.80 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC----c-----eEEEcCcHHHHHhCCCCeEEeCCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG----V-----PLLINDRIDIALACDADGVHLGQSD 388 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~----~-----~l~v~~~~~~a~~~ga~gvhl~~~~ 388 (514)
++..+.+++++++|++.++++..+....+.++ ++ .++++ + +++-.++++.+.++||+++..|..+
T Consensus 25 ~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~---~l---~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~ 98 (213)
T PRK06552 25 EEALKISLAVIKGGIKAIEVTYTNPFASEVIK---EL---VELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPSFN 98 (213)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCccHHHHHH---HH---HHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCC
Confidence 67899999999999999999999877654333 23 33442 1 2333567889999999999999888
Q ss_pred CCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-CCEEEECCCCcc
Q 010244 389 MPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-LPVVAIGGIGIS 467 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-~pv~a~GGi~~~ 467 (514)
..+....+..+...++| |+|++|+..|.+.|+||+ ++|| ....|+++++.++.+++ +|++|+|||+.+
T Consensus 99 ~~v~~~~~~~~i~~iPG--~~T~~E~~~A~~~Gad~v---klFP------a~~~G~~~ik~l~~~~p~ip~~atGGI~~~ 167 (213)
T PRK06552 99 RETAKICNLYQIPYLPG--CMTVTEIVTALEAGSEIV---KLFP------GSTLGPSFIKAIKGPLPQVNVMVTGGVNLD 167 (213)
T ss_pred HHHHHHHHHcCCCEECC--cCCHHHHHHHHHcCCCEE---EECC------cccCCHHHHHHHhhhCCCCEEEEECCCCHH
Confidence 77766666655566666 999999999999999999 6788 44578999999999984 999999999999
Q ss_pred cHHHHHHCCCCCCceEEEeecccCC------CCHHHHHHHHHHHHH
Q 010244 468 NASDVMKIGVSNLKGVAVVSALFDR------ECILPESKKLHAVLM 507 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~~~------~~~~~~~~~~~~~~~ 507 (514)
|+.+++++|++ +++++|.++.. +++.+.++++++.++
T Consensus 168 N~~~~l~aGa~---~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 168 NVKDWFAAGAD---AVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred HHHHHHHCCCc---EEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999976 456677777666554
No 46
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=99.80 E-value=8.5e-19 Score=169.55 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=135.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+++++++|+++||+|.++.+.++..++.+++.++|+++|+++ ++++.|+++.+.. .
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v------------eaE~ghlG~~d~~---------~ 145 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV------------EAEIGRVGGSEDG---------S 145 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE------------EEEeeeECCccCC---------c
Confidence 467889999999999999999999999999999999999999984 5678899976643 1
Q ss_pred CcEEEEecCCHHHHHHhhh-CCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEEC--CCCcccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAWI-DGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIG--GIGISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~~-~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~G--Gi~~~~~~~~~~~ 475 (514)
. .+|.|+||++|+.++.+ .|+||+.+ |++|+|. +..+.+|++.|+++++.+++|+++.| ||+.+|+.+++++
T Consensus 146 ~-~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~--~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~ 222 (281)
T PRK06806 146 E-DIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMY--NGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQH 222 (281)
T ss_pred c-cccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCC--CCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHc
Confidence 2 56899999999999874 59999999 9999965 45577999999999999999999999 9999999999999
Q ss_pred CCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 476 GVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 476 Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
|+. +|+++++|+. ++.+.++++.
T Consensus 223 G~~---kinv~T~i~~--a~~~a~~~~~ 245 (281)
T PRK06806 223 GIR---KINVATATFN--SVITAVNNLV 245 (281)
T ss_pred CCc---EEEEhHHHHH--HHHHHHHHHH
Confidence 999 9999999996 4666666554
No 47
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=99.80 E-value=5.5e-19 Score=162.97 Aligned_cols=153 Identities=24% Similarity=0.245 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC-c-----eEEEcCcHHHHHhCCCCeEEeCCCCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG-V-----PLLINDRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~-~-----~l~v~~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
++..+.+++++++|++++|+|.++.+..+ .++.+ ++.++ + +++.+++++.+.++|++++|+++.+.+.
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l---~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~ 89 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLRTPGALE---AIRAL---RKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGLDPEV 89 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHH---HHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHH
Confidence 57889999999999999999999876444 33333 33442 3 3444889999999999999999999887
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcccHH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGISNAS 470 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~~~~ 470 (514)
...++..+...++| |.|++|+.+|.+.|+||+.+ || .++.|.++++.++..+ ++|++|+|||+++|+.
T Consensus 90 ~~~~~~~~~~~i~g--v~t~~e~~~A~~~Gad~i~~---~p------~~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~ 158 (190)
T cd00452 90 VKAANRAGIPLLPG--VATPTEIMQALELGADIVKL---FP------AEAVGPAYIKALKGPFPQVRFMPTGGVSLDNAA 158 (190)
T ss_pred HHHHHHcCCcEECC--cCCHHHHHHHHHCCCCEEEE---cC------CcccCHHHHHHHHhhCCCCeEEEeCCCCHHHHH
Confidence 77777776777777 55999999999999999955 65 2335899999999887 6999999999999999
Q ss_pred HHHHCCCCCCceEEEeeccc
Q 010244 471 DVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~ 490 (514)
+++++|++ +++++|.++
T Consensus 159 ~~~~~G~~---~v~v~s~i~ 175 (190)
T cd00452 159 EWLAAGVV---AVGGGSLLP 175 (190)
T ss_pred HHHHCCCE---EEEEchhcc
Confidence 99999999 999999999
No 48
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.80 E-value=7.3e-19 Score=168.93 Aligned_cols=167 Identities=23% Similarity=0.215 Sum_probs=122.0
Q ss_pred HHcCCCcCEEEEcccCCHHHHHH---HHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcc--cceEEcCCHH
Q 010244 84 VLSDMQVDVVKTGMLPSTDLVKV---LLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLP--MADIVTPNVK 158 (514)
Q Consensus 84 l~~~~~~~~i~~G~~~~~~~~~~---~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~--~~diitpN~~ 158 (514)
+....++.+|++|++.+ +..+. +.+.+++++. |+|+|||+...++..+ .+.+++++ ..++||||..
T Consensus 46 ~~~~~~al~ik~G~l~~-~~~~~i~~~~~~~~~~~~-pvVlDPV~~~~s~~r~-------~~~~~Ll~~~~~~vITpN~~ 116 (249)
T TIGR00694 46 LAKIAGALVINIGTLDK-ESIEAMIAAGKSANELGV-PVVLDPVGVGATKFRT-------ETALELLSEGRFAAIRGNAG 116 (249)
T ss_pred HHHHcCceEEeCCCCCH-HHHHHHHHHHHHHHhcCC-CEEEcccccccchhHH-------HHHHHHHhhcCCceeCCCHH
Confidence 33445788999999855 44444 4444555555 4999999886654221 11234555 4699999999
Q ss_pred HHHHhhCCC-------CCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEee-cccCCCCCCCCc
Q 010244 159 EASALLGGM-------QVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRS-SRVNTRNTHGTG 230 (514)
Q Consensus 159 E~~~L~g~~-------~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~GaG 230 (514)
|+++|+|.. ...+.++..++++++.+++...|++||+. ++++++++.+.+.. .+... ..+|+|
T Consensus 117 E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~~--------D~i~~~~~~~~~~~g~~~~~-~~~GtG 187 (249)
T TIGR00694 117 EIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGEV--------DYVSDGTSVYTIHNGTELLG-KITGSG 187 (249)
T ss_pred HHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECCC--------cEEEeCCEEEEECCCChHHh-CCccch
Confidence 999999832 01135678889999988866699999986 78887766555433 33222 358999
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc
Q 010244 231 CTLASCIAAELAKGSPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 231 D~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
|+|+|+++++|++|.++.+|+..|..+...+++.+.+.
T Consensus 188 c~LssaIaa~LA~g~~~~~A~~~A~~~~~~a~~~a~~~ 225 (249)
T TIGR00694 188 CLLGSVVAAFCAVEEDPLDAAISACLLYKIAGELAAER 225 (249)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999877644
No 49
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=99.80 E-value=8.6e-19 Score=166.21 Aligned_cols=186 Identities=18% Similarity=0.146 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHHHh-hcCceEEEcC---cHHHHHhCCCCe--EEeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQICC-VHGVPLLIND---RIDIALACDADG--VHLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~~~-~~~~~l~v~~---~~~~a~~~ga~g--vhl~~~ 387 (514)
..+.+.++++.++|+++||+|.++... ....+.+++++..+. ..++.+++++ +++.+.++|+++ +|..+.
T Consensus 16 ~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~~ 95 (220)
T PRK05581 16 ARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEAS 95 (220)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeeccc
Confidence 357788999999999999999876532 113556677776664 5667899999 888889999999 787766
Q ss_pred CCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-----CCEEE
Q 010244 388 DMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-----LPVVA 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-----~pv~a 460 (514)
+.....++..++.+..+|.+++ |..|..+....++||+.+++++|+.++......+++.++++++..+ .+|++
T Consensus 96 ~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v 175 (220)
T PRK05581 96 EHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEV 175 (220)
T ss_pred hhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5555566666677889999994 6677666666679999999999988886545556777777765443 34678
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHH
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVL 506 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~ 506 (514)
.|||+++|+.++++.|++ +|++||+|++++||.+++++|++.+
T Consensus 176 ~GGI~~~nv~~l~~~GaD---~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 176 DGGINADNIKECAEAGAD---VFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred ECCCCHHHHHHHHHcCCC---EEEEChhhhCCCCHHHHHHHHHHHh
Confidence 899999999999999999 9999999999999999999998765
No 50
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=99.79 E-value=7.9e-19 Score=165.37 Aligned_cols=182 Identities=21% Similarity=0.221 Sum_probs=142.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHH--H-H-HHHHHHHHHHH-hhcCceEEEcC---cHHHHHhCCCCeE--EeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTR--G-F-LEAAKACLQIC-CVHGVPLLIND---RIDIALACDADGV--HLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~--~-~-~~~~~~~~~~~-~~~~~~l~v~~---~~~~a~~~ga~gv--hl~~~ 387 (514)
.++.+.++++.++|++++|+|.++.... . + .+.++++++.+ ....+.+++++ +++.+.++|+|++ |....
T Consensus 12 ~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~ 91 (211)
T cd00429 12 ANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEAT 91 (211)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccch
Confidence 3567789999999999999999875311 1 1 25666777666 44556788886 7888899999995 55554
Q ss_pred CCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEE
Q 010244 388 DMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVA 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a 460 (514)
+.....++...+.+..+|.+++ +..+..++...++||+.+++++++.+++..+..+++.++++++.. ++|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v 171 (211)
T cd00429 92 DHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV 171 (211)
T ss_pred hhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4444556666677889999986 355655555566999999999998888655556677888877665 389999
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHH
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKL 502 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~ 502 (514)
.|||+++|+.++++.|++ ++++||+|++.+||.+.++++
T Consensus 172 ~GGI~~env~~~~~~gad---~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 172 DGGINLETIPLLAEAGAD---VLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred ECCCCHHHHHHHHHcCCC---EEEECHHHhCCCCHHHHHHHh
Confidence 999999999999999999 999999999999999998876
No 51
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=99.78 E-value=2.8e-18 Score=160.24 Aligned_cols=163 Identities=23% Similarity=0.243 Sum_probs=135.6
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhh--cCceEEEcCcH----HHHHhCCCCeEEeCCCCC--CH
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCV--HGVPLLINDRI----DIALACDADGVHLGQSDM--PA 391 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~--~~~~l~v~~~~----~~a~~~ga~gvhl~~~~~--~~ 391 (514)
.+.++.+.++|++++++|.+..+++.. .+.++++.+.+.. +.+.+++|+++ +++.++++|+||+++.+. ..
T Consensus 9 ~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e~~~~~ 88 (203)
T cd00405 9 LEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDESPEYC 88 (203)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 356788999999999999999999988 8999999999987 78999999998 689999999999998762 12
Q ss_pred HHHHhhcCCCcE--EEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCC----CccCCHHHHHHHHHcCCCCEEEECCCC
Q 010244 392 RTARALLGPDKI--IGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKAN----NLTVGLDGLKTVCLASKLPVVAIGGIG 465 (514)
Q Consensus 392 ~~~~~~~~~~~~--ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~----~~~~g~~~l~~~~~~~~~pv~a~GGi~ 465 (514)
..+++.++...+ +++++++..++..+...++||++ |+|.+|+. ....+|+.+++++ .++|++++|||+
T Consensus 89 ~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il----~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI~ 162 (203)
T cd00405 89 AQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAIL----LDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGLT 162 (203)
T ss_pred HHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEE----EcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCCC
Confidence 334443445667 77777766666677788999994 67877753 3567899998876 689999999999
Q ss_pred cccHHHHHHCC-CCCCceEEEeecccCC
Q 010244 466 ISNASDVMKIG-VSNLKGVAVVSALFDR 492 (514)
Q Consensus 466 ~~~~~~~~~~G-a~~~~gva~~~~i~~~ 492 (514)
++|+.++++.| ++ ||+++|+|+.+
T Consensus 163 ~~Nv~~~i~~~~~~---gvdv~S~ie~~ 187 (203)
T cd00405 163 PDNVAEAIRLVRPY---GVDVSSGVETS 187 (203)
T ss_pred hHHHHHHHHhcCCC---EEEcCCcccCC
Confidence 99999999999 99 99999999976
No 52
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.78 E-value=1.7e-17 Score=158.58 Aligned_cols=207 Identities=22% Similarity=0.204 Sum_probs=141.2
Q ss_pred CCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCCCeeeeEecCHHHHHHHHHHHHcCCCcCEEEEccc
Q 010244 19 KIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTAGVQGVNIVPEDFVAAQLKSVLSDMQVDVVKTGML 98 (514)
Q Consensus 19 ~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~i~~G~~ 98 (514)
+.|.|..|.-..+++-++. ..++..|-.. +. + .+ +.+..++++.++.++.+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~a~----~~~~~g~~~~------~~--~----------~~----e~~~~~l~~~d~vvi~~G~l 60 (242)
T cd01170 7 KKPLVHCITNYVVMNFVAN----VLLAIGASPI------MS--D----------AP----EEVEELAKIAGALVINIGTL 60 (242)
T ss_pred CCCeEEEccchhhHhHHHH----HHHHhCCchh------hc--C----------CH----HHHHHHHHHcCcEEEeCCCC
Confidence 4678889988888777755 4444322111 10 1 12 23333444445566666776
Q ss_pred CC--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcc--cceEEcCCHHHHHHhhCCCCCC----
Q 010244 99 PS--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLP--MADIVTPNVKEASALLGGMQVV---- 170 (514)
Q Consensus 99 ~~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~--~~diitpN~~E~~~L~g~~~~~---- 170 (514)
.+ .+.+..+.+.+++++.+ +|+||++.+..+.. .+.+. +++. .+++||||..|+++|+| .+..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~p-vVlDp~~~~~~~~~------~~~~~-~ll~~~~~~ilTPN~~Ea~~L~g-~~~~~~~~ 131 (242)
T cd01170 61 TSEQIEAMLKAGKAANQLGKP-VVLDPVGVGATSFR------TEVAK-ELLAEGQPTVIRGNASEIAALAG-LTGLGKGV 131 (242)
T ss_pred ChHHHHHHHHHHHHHHhcCCC-EEEcccccCcchhH------HHHHH-HHHhcCCCeEEcCCHHHHHHHhC-CCCCcCcc
Confidence 42 23444555567777665 99999866432211 11222 3444 48999999999999998 3321
Q ss_pred ---C--HHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCC
Q 010244 171 ---T--VADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGS 245 (514)
Q Consensus 171 ---~--~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~ 245 (514)
+ .+++.++++++.+++...|++||++ ++++++++.+.++.......+++|+||+|+|+++++|++|.
T Consensus 132 ~~~~~~~~~~~~aa~~l~~~~~~~VllkG~~--------d~l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiAa~LA~g~ 203 (242)
T cd01170 132 DSSSSDEEDALELAKALARKYGAVVVVTGEV--------DYITDGERVVVVKNGHPLLTKITGTGCLLGAVIAAFLAVGD 203 (242)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCEEEEECCC--------cEEEECCEEEEEeCCCccccCCCchHHHHHHHHHHHHhCCC
Confidence 2 5678889999988777789999876 57777777666765443334569999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccccc
Q 010244 246 PMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 246 ~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
++.+|+..|..+.+.+++.+.+.
T Consensus 204 ~~~~A~~~A~~~~~~a~~~a~~~ 226 (242)
T cd01170 204 DPLEAAVSAVLVYGIAGELAAER 226 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999876543
No 53
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.77 E-value=3.5e-17 Score=162.11 Aligned_cols=155 Identities=26% Similarity=0.372 Sum_probs=127.2
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.+....+.+....+++.+++.+.+ +++||.... . .+ +.+++++|+++||..|++.|++ ..
T Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~--------~----~~-~~~~~~~dil~~n~~E~~~l~~-~~ 193 (292)
T cd01174 129 AADVLLLQLEIPLETVLAALRAARRAGVT-VILNPAPAR--------P----LP-AELLALVDILVPNETEAALLTG-IE 193 (292)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHhcCCE-EEEeCCCcC--------c----Cc-HHHHhhCCEEeeCHHHHHHHhC-CC
Confidence 57777776555667778888888887765 999984221 0 11 3677899999999999999998 54
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
..+.++..++++.+.+.|++.|++|.|..| .+++++++.++++.++++++|++|+||+|+|+|++.+.+|++++
T Consensus 194 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~~~ 267 (292)
T cd01174 194 VTDEEDAEKAARLLLAKGVKNVIVTLGAKG------ALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLSLE 267 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCCCc------eEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCCHH
Confidence 455567778889998999999999999987 77777777777888788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010244 249 SAVKVAKCFVETALDY 264 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~ 264 (514)
+|+++|+.++..+++.
T Consensus 268 ~al~~a~~~Aa~~~~~ 283 (292)
T cd01174 268 EAIRFANAAAALSVTR 283 (292)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999998887775
No 54
>PRK11142 ribokinase; Provisional
Probab=99.76 E-value=6.9e-17 Score=161.13 Aligned_cols=155 Identities=24% Similarity=0.351 Sum_probs=125.6
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.+....+.+.+..+++.+++.+.+ +++||... ..+.+.+++++|+++||..|++.+++ ..
T Consensus 132 ~~~~v~~~~~~~~~~~~~~~~~a~~~g~~-v~~d~~~~-------------~~~~~~~~~~~dil~~n~~Ea~~l~g-~~ 196 (306)
T PRK11142 132 NADALLMQLETPLETVLAAAKIAKQHGTK-VILNPAPA-------------RELPDELLALVDIITPNETEAEKLTG-IR 196 (306)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHHcCCE-EEEECCCC-------------cccCHHHHhhCCEEcCCHHHHHHHhC-CC
Confidence 57777776555667778888888887765 99997321 01113567889999999999999997 44
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
..+.++..++++.+.+.+++.|++|.|.+| .+++.+++.++++.++++++|++||||+|+|+|++.+++|++++
T Consensus 197 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~~~ 270 (306)
T PRK11142 197 VEDDDDAAKAAQVLHQKGIETVLITLGSRG------VWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKPLP 270 (306)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEECCCc------EEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCCHH
Confidence 455566778888888889999999999987 67777776777888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010244 249 SAVKVAKCFVETALDY 264 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~ 264 (514)
+|+++|++++..+++.
T Consensus 271 ~al~~a~~~Aa~~~~~ 286 (306)
T PRK11142 271 EAIRFAHAAAAIAVTR 286 (306)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999997777664
No 55
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.5e-16 Score=153.17 Aligned_cols=171 Identities=26% Similarity=0.314 Sum_probs=135.4
Q ss_pred cCHHHHHHHHHHHHcC-CCcC-EEEEcccC---CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhh
Q 010244 72 VPEDFVAAQLKSVLSD-MQVD-VVKTGMLP---STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENL 146 (514)
Q Consensus 72 ~~~~~~~~~l~~l~~~-~~~~-~i~~G~~~---~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~l 146 (514)
++++.+++.++.+... .+.| +++.|.++ +.+....+++.+++.+.. +++| .+| +.|.+.+
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~-vilD-----~Sg---------~~L~~~L 175 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAK-VILD-----TSG---------EALLAAL 175 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCe-EEEE-----CCh---------HHHHHHH
Confidence 3344444334433331 2455 55567653 467888899999998876 9999 333 2333233
Q ss_pred cccceEEcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCC
Q 010244 147 LPMADIVTPNVKEASALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNT 226 (514)
Q Consensus 147 l~~~diitpN~~E~~~L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 226 (514)
-..+++|+||.+|++.++| .+..+.+|..++++++...|.++|+|+.|..| .++.+.++.++...++++++++
T Consensus 176 ~~~P~lIKPN~~EL~~~~g-~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~G------al~~~~~~~~~a~~p~~~vvst 248 (310)
T COG1105 176 EAKPWLIKPNREELEALFG-RELTTLEDVIKAARELLAEGIENVIVSLGADG------ALLVTAEGVYFASPPKVQVVST 248 (310)
T ss_pred ccCCcEEecCHHHHHHHhC-CCCCChHHHHHHHHHHHHCCCCEEEEEecCcc------cEEEccCCeEEEeCCCcceecC
Confidence 3348999999999999998 77777789999999999999999999999988 8888988888888888999999
Q ss_pred CCCcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Q 010244 227 HGTGCTLASCIAAELAKGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 227 ~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+||||++.|+|++++.+++++++++++|+++.......
T Consensus 249 VGAGDs~VAGf~~~~~~~~~~e~~l~~avA~g~a~~~~ 286 (310)
T COG1105 249 VGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQ 286 (310)
T ss_pred cCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999997766554
No 56
>PTZ00292 ribokinase; Provisional
Probab=99.75 E-value=2.5e-16 Score=158.53 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=124.4
Q ss_pred cCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCC
Q 010244 90 VDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQV 169 (514)
Q Consensus 90 ~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~ 169 (514)
.+.+.+....+.+....+++.+++.+.+ +++||..... .... +.+ +.+++++|+++||..|++.|+| ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~----~~~~---~~~-~~~l~~~dii~~n~~E~~~l~g-~~~ 217 (326)
T PTZ00292 148 CKYLICQNEIPLETTLDALKEAKERGCY-TVFNPAPAPK----LAEV---EII-KPFLKYVSLFCVNEVEAALITG-MEV 217 (326)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCCE-EEEECCCCcc----cccc---ccH-HHHHhcCCEEcCCHHHHHHHhC-CCC
Confidence 6766665444556667778888877765 9999853321 1111 222 3677899999999999999987 544
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCe-EEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 170 VTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGED-FHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 170 ~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
.+.++..++++.+.+.+++.|++|.|.+| .+++.+++ .++++..+++++|++||||+|.|+|+++|++|++++
T Consensus 218 ~~~~~~~~~~~~l~~~g~~~vvvT~G~~G------a~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~ 291 (326)
T PTZ00292 218 TDTESAFKASKELQQLGVENVIITLGANG------CLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKDLK 291 (326)
T ss_pred CChhHHHHHHHHHHHcCCCeEEEEeCCCc------EEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCCHH
Confidence 55566777888888889999999999987 67776554 477888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010244 249 SAVKVAKCFVETALDY 264 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~ 264 (514)
+|+++|++++..++++
T Consensus 292 ~al~~a~a~Aa~~v~~ 307 (326)
T PTZ00292 292 ESCKRANRIAAISVTR 307 (326)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999997776664
No 57
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.74 E-value=1.1e-15 Score=152.33 Aligned_cols=154 Identities=23% Similarity=0.284 Sum_probs=123.3
Q ss_pred CcCEEEE-cccC---CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GMLP---STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~~---~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.+.+ |+.. +.+.+..+++.+++.+.+ +++||... .+.+.+...+++++||..|++.|+
T Consensus 127 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~-v~~D~~~~--------------~~~~~~~~~~~i~~~n~~E~~~l~ 191 (304)
T TIGR03828 127 EGDWLVLSGSLPPGVPPDFYAELIALAREKGAK-VILDTSGE--------------ALRDGLKAKPFLIKPNDEELEELF 191 (304)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCE-EEEECChH--------------HHHHHHhcCCcEECcCHHHHHHHh
Confidence 5777666 5432 456778888888887765 99997421 122223345789999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
+ ....+.+++.++++.+.+.+.+.|++|.|..| .+++.+++.++++.++++++|++|+||+|+|+|++.|.+|
T Consensus 192 g-~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G------~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g 264 (304)
T TIGR03828 192 G-RELKTLEEIIEAARELLDLGAENVLISLGADG------ALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESG 264 (304)
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC------cEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcC
Confidence 8 54556677888889998899999999999877 6777777677788888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|+.++..++.+
T Consensus 265 ~~~~~a~~~a~~~Aa~~~~~ 284 (304)
T TIGR03828 265 LSLEEALRLAVAAGSAAAFS 284 (304)
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 99999999999997777765
No 58
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.74 E-value=1.1e-15 Score=151.06 Aligned_cols=154 Identities=23% Similarity=0.286 Sum_probs=123.9
Q ss_pred CcCEEEE-cccCC---HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GMLPS---TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~~~---~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++++.+ |..+. .+....+++.+++.+.+ +++||... .+.+.+.+.+|+++||+.|++.++
T Consensus 128 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~-i~~D~~~~--------------~~~~~~~~~~dil~~n~~E~~~l~ 192 (289)
T cd01164 128 KGDIVVLSGSLPPGVPADFYAELVRLAREKGAR-VILDTSGE--------------ALLAALAAKPFLIKPNREELEELF 192 (289)
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHHHHHHcCCe-EEEECChH--------------HHHHHHhcCCcEECCCHHHHHHHh
Confidence 5787776 55432 36677788888877765 99998321 112223378999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
+ ....+.++..++++.+.+.+++.|++|.|.+| .+++.+++.++++.++.+++|++|+||+|+|+|+++|.+|
T Consensus 193 ~-~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G------~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g 265 (289)
T cd01164 193 G-RPLGDEEDVIAAARKLIERGAENVLVSLGADG------ALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQG 265 (289)
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC------CEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcC
Confidence 8 55556677888899999999999999999988 6777777777888888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|+.++...++.
T Consensus 266 ~~~~~a~~~A~~~Aa~~~~~ 285 (289)
T cd01164 266 LSLEEALRLAVAAGSATAFS 285 (289)
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 99999999999997777664
No 59
>PRK09850 pseudouridine kinase; Provisional
Probab=99.74 E-value=3.3e-16 Score=156.68 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=119.8
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.+....+.+....+.+.. .+. ++++||+.. .....+ ..+++++|+++||..|+..|+| ..
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~--~g~-~v~~D~~~~----------~~~~~~-~~~l~~~dil~~N~~Ea~~l~g-~~ 198 (313)
T PRK09850 134 RAKVIVADCNISEEALAWILDNA--ANV-PVFVDPVSA----------WKCVKV-RDRLNQIHTLKPNRLEAETLSG-IA 198 (313)
T ss_pred cCCEEEEeCCCCHHHHHHHHHhc--cCC-CEEEEcCCH----------HHHHHH-HhhhccceEEccCHHHHHHHhC-CC
Confidence 46777776544556655555532 244 499998521 101223 3677899999999999999998 44
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCC-eEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGE-DFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPM 247 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l 247 (514)
..+.++..++++.+.+.|.+.|+||.|.+| .+++..+ +..+++..+++++||+||||+|.|+|++.|.+|+++
T Consensus 199 ~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G------~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~~ 272 (313)
T PRK09850 199 LSGREDVAKVAAWFHQHGLNRLVLSMGGDG------VYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPF 272 (313)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCCce------EEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCCH
Confidence 555667788888888889999999999977 7777643 445677777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 010244 248 LSAVKVAKCFVETALDYS 265 (514)
Q Consensus 248 ~~A~~~A~~~~~~~i~~~ 265 (514)
.+|+++|+++++.+++..
T Consensus 273 ~eal~~a~a~aa~~~~~~ 290 (313)
T PRK09850 273 AESVRFAQGCSSMALSCE 290 (313)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999988887743
No 60
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=99.73 E-value=3.1e-17 Score=150.22 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC-c-----eEEEcCcHHHHHhCCCCeEEeCCCCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG-V-----PLLINDRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~-~-----~l~v~~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
++..+.+++++++|++.++++..+.+..+.++ +++ +++. + +++-.++.+.+.++||+++..|..+..+
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~---~l~---~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLRTPVALDAIR---LLR---KEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGLTPEL 93 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccHHHHHH---HHH---HHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 57889999999999999999998877655433 333 3333 2 2233457888999999999999887776
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCC-HHHHHHHHHcC-CCCEEEECCCCcccH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVG-LDGLKTVCLAS-KLPVVAIGGIGISNA 469 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g-~~~l~~~~~~~-~~pv~a~GGi~~~~~ 469 (514)
....+..+...++| |.|+.|+..|++.|+|+| ++|| +...| ..+++.++.++ ++|+++.|||+++|+
T Consensus 94 ~~~~~~~~i~~iPG--~~TptEi~~A~~~Ga~~v---KlFP------A~~~GG~~yikal~~plp~i~~~ptGGV~~~N~ 162 (204)
T TIGR01182 94 AKHAQDHGIPIIPG--VATPSEIMLALELGITAL---KLFP------AEVSGGVKMLKALAGPFPQVRFCPTGGINLANV 162 (204)
T ss_pred HHHHHHcCCcEECC--CCCHHHHHHHHHCCCCEE---EECC------chhcCCHHHHHHHhccCCCCcEEecCCCCHHHH
Confidence 66666555555555 999999999999999999 9999 44454 99999999998 899999999999999
Q ss_pred HHHHHCCCCCCceEEEeecccCCC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
.+|+++|+. ++++||.++..+
T Consensus 163 ~~~l~aGa~---~vg~Gs~L~~~~ 183 (204)
T TIGR01182 163 RDYLAAPNV---ACGGGSWLVPKD 183 (204)
T ss_pred HHHHhCCCE---EEEEChhhcCch
Confidence 999999999 999999999643
No 61
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.73 E-value=5.4e-16 Score=153.71 Aligned_cols=156 Identities=22% Similarity=0.338 Sum_probs=126.1
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+.+.+.+....+.+.+..+++.+++.+.+ +++||.... +.+.+.+++++|+++||..|++.|++ ..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~D~~~~~------------~~~~~~~~~~~d~l~~n~~E~~~l~~-~~ 189 (293)
T TIGR02152 124 ESDIVLLQLEIPLETVLEAAKIAKKHGVK-VILNPAPAI------------KDLDDELLSLVDIITPNETEAEILTG-IE 189 (293)
T ss_pred cCCEEEEecCCCHHHHHHHHHHHHHcCCE-EEEECCcCc------------ccchHHHHhcCCEEccCHHHHHHHhC-CC
Confidence 46777776555667788888888887765 999984210 11123677899999999999999997 44
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
..+.++..++++.+.++|++.|++|.|..| .+++++++.++++.++++++|++|+||+|+|+|++.|.+|++++
T Consensus 190 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g------~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~~~ 263 (293)
T TIGR02152 190 VTDEEDAEKAAEKLLEKGVKNVIITLGSKG------ALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKSLE 263 (293)
T ss_pred CCCcchHHHHHHHHHHcCCCeEEEEeCCCc------eEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCCHH
Confidence 445556778888898889999999999987 67777777777887778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010244 249 SAVKVAKCFVETALDY 264 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~ 264 (514)
+|+++|+.++..+++.
T Consensus 264 ~al~~a~~~Aa~~~~~ 279 (293)
T TIGR02152 264 DAIRFANAAAAISVTR 279 (293)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999998877775
No 62
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=99.73 E-value=1.8e-16 Score=164.68 Aligned_cols=195 Identities=18% Similarity=0.158 Sum_probs=151.3
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC---------cHH
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND---------RID 372 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~---------~~~ 372 (514)
++|++..|... .++..+.+++++++|++++|+- . +.......+.++.+++.++.++++++ +++
T Consensus 4 ~~l~~alD~~~----~~~~~~~~~~~~~~Gv~~ie~g---~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~ 75 (430)
T PRK07028 4 PILQVALDLLE----LDRAVEIAKEAVAGGADWIEAG---T-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVE 75 (430)
T ss_pred ceEEEEeccCC----HHHHHHHHHHHHhcCCcEEEeC---C-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHH
Confidence 46767667643 2578889999999999999862 1 33334456778888888888888888 999
Q ss_pred HHHhCCCCeEEeCC-CCC-CHH-HHHh--hcCCCcEEE-EecCC-HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHH
Q 010244 373 IALACDADGVHLGQ-SDM-PAR-TARA--LLGPDKIIG-VSCKT-PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLD 445 (514)
Q Consensus 373 ~a~~~ga~gvhl~~-~~~-~~~-~~~~--~~~~~~~ig-~s~~~-~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~ 445 (514)
.+.++|++++|+.. .+. ... .++. ..+....+| .|+++ .+.++.+.+.|+|||.++|.|.+.+++ ..+++
T Consensus 76 ~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~---~~~~~ 152 (430)
T PRK07028 76 MAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLG---KDPLE 152 (430)
T ss_pred HHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcC---CChHH
Confidence 99999999999743 332 121 1222 233334444 37766 566788899999999999888655442 35688
Q ss_pred HHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 446 GLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 446 ~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
.++++++.+++||++.|||+.+|+.+++++|++ ++++||+|++++||.+.+++|++.+++.+
T Consensus 153 ~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aGAd---gv~vGsaI~~~~d~~~~~~~l~~~i~~~~ 214 (430)
T PRK07028 153 LLKEVSEEVSIPIAVAGGLDAETAAKAVAAGAD---IVIVGGNIIKSADVTEAARKIREAIDSGK 214 (430)
T ss_pred HHHHHHhhCCCcEEEECCCCHHHHHHHHHcCCC---EEEEChHHcCCCCHHHHHHHHHHHHhccC
Confidence 999999888999999999999999999999999 99999999999999999999999988763
No 63
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.73 E-value=1.5e-16 Score=154.27 Aligned_cols=168 Identities=23% Similarity=0.219 Sum_probs=118.8
Q ss_pred HcCCCcCEEEEcccCCHHHHHH---HHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHH
Q 010244 85 LSDMQVDVVKTGMLPSTDLVKV---LLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEAS 161 (514)
Q Consensus 85 ~~~~~~~~i~~G~~~~~~~~~~---~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~ 161 (514)
.+..++.+|++|++. .+.++. +.+.+++++.+ +|+||++....+ +..+....+.+. +++++||||..|+.
T Consensus 52 ~~~~~alvi~~G~l~-~~~~~~i~~~~~~a~~~~~p-vVlDpv~~~~~~---~~~~~~~~ll~~--~~~~vItPN~~E~~ 124 (263)
T PRK09355 52 AKIAGALVINIGTLT-EERIEAMLAAGKIANEAGKP-VVLDPVGVGATS---YRTEFALELLAE--VKPAVIRGNASEIA 124 (263)
T ss_pred HHhcCceEEeCCCCC-HHHHHHHHHHHHHHHhcCCC-EEECCcccCcch---hhHHHHHHHHHh--cCCcEecCCHHHHH
Confidence 344467778888884 444433 44445666665 999998764322 122222333321 36799999999999
Q ss_pred HhhCCCC----C---CCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHH
Q 010244 162 ALLGGMQ----V---VTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLA 234 (514)
Q Consensus 162 ~L~g~~~----~---~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~ 234 (514)
+|+|... . .+.++..++++++.+++...|++||++ ++++++++.+.++.......+.+|+||+|+
T Consensus 125 ~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~--------d~I~~~~~~~~~~~g~~~~~~v~GtGc~L~ 196 (263)
T PRK09355 125 ALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV--------DYITDGERVVSVHNGHPLMTKVTGTGCLLS 196 (263)
T ss_pred HHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC--------cEEEeCCEEEEEeCCCcccCCcccccHHHH
Confidence 9998321 1 134577888999988877889999987 788887766666522222335599999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccc
Q 010244 235 SCIAAELAKGSPMLSAVKVAKCFVETALDYSKD 267 (514)
Q Consensus 235 a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~ 267 (514)
|+++++|++|.++.+|+..|..+...+-+.+.+
T Consensus 197 ~~iaa~lA~g~~~~~A~~~A~~~~~~a~~~a~~ 229 (263)
T PRK09355 197 AVVAAFAAVEKDYLEAAAAACAVYGIAGELAAE 229 (263)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888766543
No 64
>PRK09954 putative kinase; Provisional
Probab=99.72 E-value=1.2e-15 Score=155.83 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=119.5
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+.+.+.+....+.+....+.+.++ +. ++++||... .....+ +++++++|+++||..|++.|+| ..
T Consensus 187 ~~~~v~~~~~~~~~~~~~~~~~a~--~~-~v~~D~~~~----------~~~~~~-~~~l~~~dil~~n~~Ea~~l~g-~~ 251 (362)
T PRK09954 187 HAGVVLADCNLTAEALEWVFTLAD--EI-PVFVDTVSE----------FKAGKI-KHWLAHIHTLKPTQPELEILWG-QA 251 (362)
T ss_pred cCCEEEEECCCCHHHHHHHHHhCC--CC-cEEEECCCH----------HHhhhh-hhhhccccEEecCHHHHHHHcC-CC
Confidence 467777776556666666665542 33 499997421 001122 3678899999999999999998 55
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCC-eEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGE-DFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPM 247 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l 247 (514)
..+.++..++++.+.+.|++.|+||.|.+| .+++..+ +.++++.++++++||+||||+|.|+|++.|.+|+++
T Consensus 252 ~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G------~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~~ 325 (362)
T PRK09954 252 ITSDADRNAAVNALHQQGVQQIFVYLPDES------VFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSF 325 (362)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeCCcc------EEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCCH
Confidence 555566778888899999999999999977 6666644 356667778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010244 248 LSAVKVAKCFVETALDY 264 (514)
Q Consensus 248 ~~A~~~A~~~~~~~i~~ 264 (514)
++|+++|++++..++..
T Consensus 326 ~eal~~a~a~Aal~~~s 342 (362)
T PRK09954 326 RDSARFAMACAAISRAS 342 (362)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999997776554
No 65
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.72 E-value=8.9e-17 Score=149.20 Aligned_cols=159 Identities=14% Similarity=0.128 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC-----c-eEEEcCcHHHHHhCCCCeEEeCCCCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG-----V-PLLINDRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~v~~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
++..+.+++++++|++.++++..+.+..+.++..+ .+...++. + +++-.++++.+.++||+++..|..+..+
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~--~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~~~~~v 104 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELV--KYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPLFNPDI 104 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHH--HHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 57889999999999999999999988766443322 11222222 1 3344567889999999999999888776
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCc--cc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGI--SN 468 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~--~~ 468 (514)
....+..+...++| |.|+.|+..|+++|+|+| ++|| +...|+.+++.++.++ ++|+++.|||++ +|
T Consensus 105 ~~~~~~~~i~~iPG--~~TpsEi~~A~~~Ga~~v---KlFP------A~~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n 173 (222)
T PRK07114 105 AKVCNRRKVPYSPG--CGSLSEIGYAEELGCEIV---KLFP------GSVYGPGFVKAIKGPMPWTKIMPTGGVEPTEEN 173 (222)
T ss_pred HHHHHHcCCCEeCC--CCCHHHHHHHHHCCCCEE---EECc------ccccCHHHHHHHhccCCCCeEEeCCCCCcchhc
Confidence 66665555555555 999999999999999999 9999 4457999999999998 799999999998 89
Q ss_pred HHHHHHCCCCCCceEEEeecccCC
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+.+|+++|+. ++++||.++..
T Consensus 174 ~~~yl~aGa~---avg~Gs~L~~~ 194 (222)
T PRK07114 174 LKKWFGAGVT---CVGMGSKLIPK 194 (222)
T ss_pred HHHHHhCCCE---EEEEChhhcCc
Confidence 9999999999 99999999843
No 66
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.72 E-value=2.5e-16 Score=156.05 Aligned_cols=161 Identities=25% Similarity=0.252 Sum_probs=123.6
Q ss_pred CcCEEEEcc-cC--C---HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHH
Q 010244 89 QVDVVKTGM-LP--S---TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASA 162 (514)
Q Consensus 89 ~~~~i~~G~-~~--~---~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (514)
+.+.+.+.. .. . .+.+..+++.+++.+.+ +++||++... .++........+.+++++|+++||..|++.
T Consensus 124 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~D~~~~~~----~~~~~~~~~~~~~~~~~~dil~~n~~E~~~ 198 (294)
T cd01166 124 GADHLHLSGITLALSESAREALLEALEAAKARGVT-VSFDLNYRPK----LWSAEEAREALEELLPYVDIVLPSEEEAEA 198 (294)
T ss_pred CCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCE-EEECCCCcch----hcChHHHHHHHHHHHHhCCEEEcCHHHHHH
Confidence 577776653 21 1 25566677777766655 9999976421 122332333334788999999999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 163 LLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 163 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
|++ ... .++..+.++++ +++++.|++|.|+.| .+++++++.++++..+++++|++||||+|+|+|++.|+
T Consensus 199 l~~-~~~--~~~~~~~~~~l-~~g~~~viit~G~~G------~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~ 268 (294)
T cd01166 199 LLG-DED--PTDAAERALAL-ALGVKAVVVKLGAEG------ALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLL 268 (294)
T ss_pred HhC-CCC--chhHHHHHHhh-cCCccEEEEEEcCCc------eEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHH
Confidence 987 322 24556666666 789999999999987 77777777788888888889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhc
Q 010244 243 KGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+++++|+++|+.+++.++++
T Consensus 269 ~g~~~~~a~~~a~~~aa~~i~~ 290 (294)
T cd01166 269 EGWDLEEALRFANAAAALVVTR 290 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888775
No 67
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.71 E-value=1.5e-15 Score=151.37 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=122.8
Q ss_pred CcCEEEE-ccc---CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GML---PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~---~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.+.+ |+. .+++.+..+++.+++.+.+ +++||.... + .+++.+++++||..|++.++
T Consensus 134 ~~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~-v~~D~~~~~--------------~--~~~~~~d~l~~n~~E~~~l~ 196 (304)
T cd01172 134 EADVVILSDYGKGVLTPRVIEALIAAARELGIP-VLVDPKGRD--------------Y--SKYRGATLLTPNEKEAREAL 196 (304)
T ss_pred cCCEEEEEcCCCCccCHHHHHHHHHHHHhcCCC-EEEeCCCcc--------------h--hhccCCcEeCCCHHHHHHHh
Confidence 5777776 432 2467788888888887765 999984220 0 35678999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH-hcCCCeEEEecccCCCCCCceEEEEe-CCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 165 GGMQVVTVADMCSAAKLLH-NLGPRTVLVKGGDLPDSSDAVDIFFD-GEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~-~~g~~~Vvvt~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
+ ....+.++..++++++. +.|++.|++|.|.+| .++++ +++.++++..+++++|++||||+|+|+|+++|.
T Consensus 197 ~-~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~ 269 (304)
T cd01172 197 G-DEINDDDELEAAGEKLLELLNLEALLVTLGEEG------MTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALA 269 (304)
T ss_pred C-CCCCChHHHHHHHHHHHHHhCCCeEEEEcCCCc------cEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHH
Confidence 8 44445567777888776 468999999999988 77777 666788888888899999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhc
Q 010244 243 KGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+++++|+++|++++..+++.
T Consensus 270 ~g~~~~~al~~a~a~Aa~~~~~ 291 (304)
T cd01172 270 AGADLEEAAFLANAAAGVVVGK 291 (304)
T ss_pred cCCCHHHHHHHHHHHhheeeec
Confidence 9999999999999997776664
No 68
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.71 E-value=4.1e-15 Score=148.16 Aligned_cols=154 Identities=25% Similarity=0.296 Sum_probs=123.9
Q ss_pred CcCEEEE-ccc---CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GML---PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~---~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.+.+ |+. .+.+....+++.+++.+.+ +++||.. . .+.+.+..++|+++||..|+..|+
T Consensus 127 ~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~D~~~----------~----~~~~~~~~~~dil~~n~~E~~~l~ 191 (303)
T TIGR03168 127 SGDIVVISGSLPPGVPPDFYAQLIAIARKRGAK-VILDTSG----------E----ALREALAAKPFLIKPNHEELEELF 191 (303)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHCCCE-EEEECCc----------H----HHHHHHhcCCcEECCCHHHHHHHh
Confidence 5777776 443 2456677888888887765 9999831 1 122233457899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
| ....+.++..++++.+.+++++.|++|.|.+| .+++++++.++++.++.+++|++||||+|+|+|++++.+|
T Consensus 192 g-~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G------~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g 264 (303)
T TIGR03168 192 G-RELKTEEEIIEAARELLDRGAENVLVSLGADG------ALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARG 264 (303)
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCCEEEEeecCCC------cEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcC
Confidence 8 44455667778888888889999999999987 7777777777888888888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|+.++..++++
T Consensus 265 ~~i~~a~~~A~~~aa~~~~~ 284 (303)
T TIGR03168 265 LSLEEALRFAVAAGSAAAFS 284 (303)
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 99999999999998777765
No 69
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=99.71 E-value=1.1e-16 Score=145.75 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhc--Cc-eEEEcCcHHHHHhCCCCeEEeCCCCCCHHHH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVH--GV-PLLINDRIDIALACDADGVHLGQSDMPARTA 394 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~ 394 (514)
++..+.+++++++|++.++++..+.+..+.++ .+++-..+. |+ +++-.++.+.|.++||+++..|..+.++.+.
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~---~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~ 96 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTPNALEAIE---ALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEY 96 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTSTTHHHHHH---HHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCccHHHHHH---HHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 67899999999999999999999877665443 333322221 11 3344567889999999999999887766555
Q ss_pred HhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCC-HHHHHHHHHcC-CCCEEEECCCCcccHHHH
Q 010244 395 RALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVG-LDGLKTVCLAS-KLPVVAIGGIGISNASDV 472 (514)
Q Consensus 395 ~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g-~~~l~~~~~~~-~~pv~a~GGi~~~~~~~~ 472 (514)
.+..+...++| |.|+.|+..|.++|+|++ ++|| +..+| ..+++.++.++ ++|+++.|||+++|+.+|
T Consensus 97 ~~~~~i~~iPG--~~TptEi~~A~~~G~~~v---K~FP------A~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~ 165 (196)
T PF01081_consen 97 AREYGIPYIPG--VMTPTEIMQALEAGADIV---KLFP------AGALGGPSYIKALRGPFPDLPFMPTGGVNPDNLAEY 165 (196)
T ss_dssp HHHHTSEEEEE--ESSHHHHHHHHHTT-SEE---EETT------TTTTTHHHHHHHHHTTTTT-EEEEBSS--TTTHHHH
T ss_pred HHHcCCcccCC--cCCHHHHHHHHHCCCCEE---EEec------chhcCcHHHHHHHhccCCCCeEEEcCCCCHHHHHHH
Confidence 55544455555 999999999999999999 9999 55567 99999999998 799999999999999999
Q ss_pred HHCCCCCCceEEEeecccCC
Q 010244 473 MKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~~~ 492 (514)
+++|+. ++++||.++..
T Consensus 166 l~ag~~---~vg~Gs~L~~~ 182 (196)
T PF01081_consen 166 LKAGAV---AVGGGSWLFPK 182 (196)
T ss_dssp HTSTTB---SEEEESGGGSH
T ss_pred HhCCCE---EEEECchhcCH
Confidence 999999 99999999964
No 70
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.71 E-value=1.8e-15 Score=151.51 Aligned_cols=151 Identities=22% Similarity=0.273 Sum_probs=119.5
Q ss_pred CcCEEEEc-cc---CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKTG-ML---PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~G-~~---~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.|.+. .. .+.+.+..+++.+++.+.+ +++||+.. .+ ..++.+|+++||..|++.|+
T Consensus 143 ~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~--------------~~--~~~~~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 143 SADAVVLSDYAKGVLTPRVVQEVIAAARKHGKP-VLVDPKGK--------------DF--SRYRGATLITPNRKEAEAAV 205 (315)
T ss_pred hCCEEEEecCCCCccCHHHHHHHHHHHHhcCCC-EEEeCCCc--------------ch--hhcCCCcEECCCHHHHHHHh
Confidence 57777773 21 2466778888888888776 99998521 01 24678999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH-hcCCCeEEEecccCCCCCCceEEEEe-CCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 165 GGMQVVTVADMCSAAKLLH-NLGPRTVLVKGGDLPDSSDAVDIFFD-GEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~-~~g~~~Vvvt~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
+ . ..+.++..++++.+. +.|++.|++|.|..| .++++ +++.++++..+++++||+||||+|+|+|++++.
T Consensus 206 ~-~-~~~~~~~~~~~~~l~~~~g~~~vivT~G~~G------~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~ 277 (315)
T TIGR02198 206 G-A-CDTEAELVQAAEKLLEELDLEALLVTRSEKG------MTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALA 277 (315)
T ss_pred C-C-CCCHHHHHHHHHHHHHHcCCCEEEEEcCCCC------eEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHH
Confidence 7 2 334566777777776 468999999999987 67776 345677887778889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhc
Q 010244 243 KGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+++++|+++|++++..++++
T Consensus 278 ~g~~~~~al~~A~~~aa~~~~~ 299 (315)
T TIGR02198 278 AGASLEEACRLANAAAGVVVGK 299 (315)
T ss_pred cCCCHHHHHHHHHHHhhhhhcc
Confidence 9999999999999997777664
No 71
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.70 E-value=5.7e-15 Score=147.71 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=121.0
Q ss_pred CcCEE-EEcccCC---HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVV-KTGMLPS---TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i-~~G~~~~---~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++++ +.|+..+ .+....+++.+++.+.+ +++||.. . .+.+.+.+.+++++||..|+..|+
T Consensus 131 ~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~-----------~---~~~~~~~~~~~~l~~n~~E~~~l~ 195 (312)
T PRK09513 131 QFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPC-IIFDSSR-----------E---ALVAGLKAAPWLVKPNRRELEIWA 195 (312)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCE-EEEECCh-----------H---HHHHHhccCCeEEcCCHHHHHHHh
Confidence 57776 4566543 35556666677666655 9999841 1 122234567889999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
| ....+.++..++++.+.+.|++.|++|.|..| .+++.+++.++.+.++++++|++|+||+|+|+|+++|++|
T Consensus 196 g-~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g 268 (312)
T PRK09513 196 G-RKLPELKDVIEAAHALREQGIAHVVISLGAEG------ALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMR 268 (312)
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCC------cEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcC
Confidence 8 55556677888888998899999999999977 6666666666677777888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|++++..++..
T Consensus 269 ~~~~~a~~~A~a~Aa~~~~~ 288 (312)
T PRK09513 269 ESSEHTLRLATAVSALAVSQ 288 (312)
T ss_pred CCHHHHHHHHHHHHHHHhhC
Confidence 99999999999997777765
No 72
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.70 E-value=1.2e-15 Score=159.97 Aligned_cols=161 Identities=22% Similarity=0.241 Sum_probs=123.6
Q ss_pred CcCEEEEc-cc---CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKTG-ML---PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~G-~~---~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.+.++ +. .+.+.+..+++.+++.+.+ +++||...... .+.+.+......+.+++++|+++||+.|++.|+
T Consensus 224 ~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~-V~~Dp~~~~~~--~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~ 300 (470)
T PLN02341 224 QSKALFCNGYVFDELSPSAIASAVDYAIDVGTA-VFFDPGPRGKS--LLVGTPDERRALEHLLRMSDVLLLTSEEAEALT 300 (470)
T ss_pred cCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCE-EEEeCCCcccc--cccChHHHHHHHHHHHhhCCEEEecHHHHHHHh
Confidence 46777654 32 3567788888888887775 99999643110 111111112223478889999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 165 GGMQVVTVADMCSAAKLLHNLG--PRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g--~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
| . ++..++++.+.+.+ .+.|+||.|.+| .+++++++.++++.++++++||+||||+|.|+|++++.
T Consensus 301 g-~-----~~~~~a~~~l~~~g~~~k~VVVTlG~~G------a~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll 368 (470)
T PLN02341 301 G-I-----RNPILAGQELLRPGIRTKWVVVKMGSKG------SILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYI 368 (470)
T ss_pred C-C-----CCHHHHHHHHHhcCCCCCEEEEeeCCCC------eEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHH
Confidence 8 2 23456777787766 479999999988 78888888888999889999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhc
Q 010244 243 KGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+++++|+++|++++..++..
T Consensus 369 ~G~~l~eal~~A~a~aA~~v~~ 390 (470)
T PLN02341 369 HNLPLVNTLTLANAVGAATAMG 390 (470)
T ss_pred cCCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999997766654
No 73
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.70 E-value=1.9e-16 Score=144.51 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=127.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC-c-----eEEEcCcHHHHHhCCCCeEEeCCCCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG-V-----PLLINDRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~-~-----~l~v~~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
++..+.+++++++|++.++++..+....+.++ +++ +++. + +++-.++.+.+.++||+++..|..+.++
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~---~l~---~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~v 89 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLRTPAALDAIR---AVA---AEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQEL 89 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccHHHHHH---HHH---HHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 67889999999999999999999877665433 332 2332 1 3344567889999999999999988777
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccC-CHHHHHHHHHcC-CCCEEEECCCCcccH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNA 469 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~-g~~~l~~~~~~~-~~pv~a~GGi~~~~~ 469 (514)
....+..+...++| |.|+.|+..|+++|+|+| ++|| +... |..+++.++.++ ++|+++.|||+++|+
T Consensus 90 i~~a~~~~i~~iPG--~~TptEi~~A~~~Ga~~v---K~FP------a~~~GG~~yikal~~plp~~~l~ptGGV~~~n~ 158 (201)
T PRK06015 90 LAAANDSDVPLLPG--AATPSEVMALREEGYTVL---KFFP------AEQAGGAAFLKALSSPLAGTFFCPTGGISLKNA 158 (201)
T ss_pred HHHHHHcCCCEeCC--CCCHHHHHHHHHCCCCEE---EECC------chhhCCHHHHHHHHhhCCCCcEEecCCCCHHHH
Confidence 66666655555666 999999999999999999 9999 5456 699999999998 899999999999999
Q ss_pred HHHHHCCCCCCceEEEeecccCC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
.+|+++|+. .++.||.++..
T Consensus 159 ~~~l~ag~~---~~~ggs~l~~~ 178 (201)
T PRK06015 159 RDYLSLPNV---VCVGGSWVAPK 178 (201)
T ss_pred HHHHhCCCe---EEEEchhhCCc
Confidence 999999988 88888888754
No 74
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.70 E-value=2e-15 Score=150.77 Aligned_cols=157 Identities=19% Similarity=0.214 Sum_probs=122.3
Q ss_pred CcCEEEE-cccC---CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GMLP---STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~~---~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.+.+ |... +.+....+.+.+++.+.+ +++||... . ...+. ..++.+|+++||..|+..++
T Consensus 126 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~----------~-~~~~~-~~~~~~dii~~n~~E~~~l~ 192 (309)
T PRK13508 126 SVEVVAISGSLPAGLPVDYYAQLIELANQAGKP-VVLDCSGA----------A-LQAVL-ESPYKPTVIKPNIEELSQLL 192 (309)
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCE-EEEECCcH----------H-HHHHH-hccCCceEEccCHHHHHHHh
Confidence 5777766 4332 245577788888887765 99998411 1 12222 23568999999999999999
Q ss_pred CCCCC-CCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHc
Q 010244 165 GGMQV-VTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAK 243 (514)
Q Consensus 165 g~~~~-~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~ 243 (514)
| .+. .+.++..+.++++...|++.|++|.|.+| ++++.+++.++++.++++++||+||||+|.|+|++.|++
T Consensus 193 g-~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G------~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~ 265 (309)
T PRK13508 193 G-KEVSEDLDELKEVLQQPLFEGIEWIIVSLGADG------AFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLH 265 (309)
T ss_pred C-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCc------eEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHc
Confidence 8 433 34566777777777789999999999988 677777777778888888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc
Q 010244 244 GSPMLSAVKVAKCFVETALDYS 265 (514)
Q Consensus 244 g~~l~~A~~~A~~~~~~~i~~~ 265 (514)
|+++++|+++|++++..++++.
T Consensus 266 g~~~~~al~~a~a~aa~~~~~~ 287 (309)
T PRK13508 266 QEDDADLLKKANVLGMLNAQEK 287 (309)
T ss_pred CCCHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999977776653
No 75
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.70 E-value=2.2e-15 Score=150.43 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=123.1
Q ss_pred CcCEEEE-cccC---CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GMLP---STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~~---~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+++.+.+ |... +.+....+.+.+++.+.+ +++||+.. ....+. ..++++|+++||..|++.|+
T Consensus 126 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~-----------~~~~~~-~~~~~~dil~~n~~E~~~l~ 192 (309)
T TIGR01231 126 KVEVVAISGSLPKGLPQDYYAQIIERCQNKGVP-VVLDCSGA-----------TLQTVL-ENPAKPTVIKPNIEELSQLL 192 (309)
T ss_pred cCCEEEEECCCCCCcCHHHHHHHHHHHHhCCCe-EEEECChH-----------HHHHHH-hccCCCeEEcCCHHHHHHHh
Confidence 4676666 3321 346677888888877765 99998532 122232 34578999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
|.....+.+++.+.++++.+.|.+.|++|.|.+| .+++.+++.++++.++++++||+||||+|.|+|++.|++|
T Consensus 193 g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G------~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g 266 (309)
T TIGR01231 193 NQELTEDLESLKQALSQPLFSGIEWIIVSLGAQG------AFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNH 266 (309)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCc------eEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcC
Confidence 8322234566777777777789999999999988 7777777777788888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcc
Q 010244 245 SPMLSAVKVAKCFVETALDYS 265 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~~ 265 (514)
+++++|+++|++++..+.++.
T Consensus 267 ~~~~~a~~~a~a~aa~~~~~~ 287 (309)
T TIGR01231 267 ESDHDLLKKANTLGMLNAQEA 287 (309)
T ss_pred CCHHHHHHHHHHHHHHHhcCc
Confidence 999999999999977776644
No 76
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.69 E-value=6.4e-15 Score=145.55 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=119.4
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.+....+++....+.+.+++.+.+ +++||... .....+. ++++++|+++||..|+..+++ ..
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~a~~~~~~-v~~d~~~~----------~~~~~~~-~~~~~~dii~~n~~E~~~~~~-~~ 194 (288)
T cd01941 128 EAKPIVVDANLPEEALEYLLALAAKHGVP-VAFEPTSA----------PKLKKLF-YLLHAIDLLTPNRAELEALAG-AL 194 (288)
T ss_pred cCCEEEEeCCCCHHHHHHHHHhhhhcCCc-EEEEccch----------HHhccch-hhcccceEEeCCHHHHHHHhC-cc
Confidence 56777765444667777888888877665 99998422 1111111 478999999999999999998 33
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeC---CeEEEEee-cccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDG---EDFHELRS-SRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~---~~~~~~~~-~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
..+.++..++++.+.+.+++.|++|.|.+| .+++++ ++.++++. ...+++||+||||+|.|+|+++|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~vvit~G~~G------a~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g 268 (288)
T cd01941 195 IENNEDENKAAKILLLPGIKNVIVTLGAKG------VLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEG 268 (288)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEEEeCCCc------EEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcC
Confidence 322333445677778889999999999987 677765 45567777 46778899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 010244 245 SPMLSAVKVAKCFVETALD 263 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~ 263 (514)
+++++|+++|+.+++.+++
T Consensus 269 ~~~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 269 MSLDDSLRFAQAAAALTLE 287 (288)
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999877664
No 77
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.69 E-value=2.1e-15 Score=150.58 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=121.7
Q ss_pred CcCEEEE-cccCC---HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKT-GMLPS---TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~-G~~~~---~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
+.+.+.+ |++.. .+....+++.+++.+.+ +++||+. +..... ..++.+++++||..|+..|+
T Consensus 130 ~~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~-----------~~~~~~--~~~~~~~~i~~n~~E~~~l~ 195 (309)
T PRK10294 130 SGAILVISGSLPPGVKLEKLTQLISAAQKQGIR-CIIDSSG-----------DALSAA--LAIGNIELVKPNQKELSALV 195 (309)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCe-EEEeCCC-----------HHHHHH--HhcCCCeEECCCHHHHHHHh
Confidence 3555544 66532 46777888888887765 9999831 111111 12467899999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcC-CCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHc
Q 010244 165 GGMQVVTVADMCSAAKLLHNLG-PRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAK 243 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g-~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~ 243 (514)
+ .+..+.+++.++++.+++.+ .+.|++|.|..| .+++++++.++++.++++++|++||||+|+|+|+++|.+
T Consensus 196 g-~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G------~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~ 268 (309)
T PRK10294 196 N-RDLTQPDDVRKAAQELVNSGKAKRVVVSLGPQG------ALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAE 268 (309)
T ss_pred C-CCCCCHHHHHHHHHHHHHcCCCCEEEEecCCCc------eEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHc
Confidence 7 55555667888899998876 789999999988 777777777778877888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q 010244 244 GSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 244 g~~l~~A~~~A~~~~~~~i~~ 264 (514)
|+++++|+++|++++..++.+
T Consensus 269 g~~~~~al~~a~a~aa~~v~~ 289 (309)
T PRK10294 269 NASLEEMVRFGVAAGSAATLN 289 (309)
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999997766664
No 78
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.69 E-value=1e-15 Score=151.74 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=121.7
Q ss_pred CcCEEEEcccC---C--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChh-HHHHHHHhhcccceEEcCCHHHHHH
Q 010244 89 QVDVVKTGMLP---S--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPS-TITGLRENLLPMADIVTPNVKEASA 162 (514)
Q Consensus 89 ~~~~i~~G~~~---~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~-~~~~l~~~ll~~~diitpN~~E~~~ 162 (514)
+++.+.++... . .+.+..+++.+++.+.+ +++||+++. .+++.. ......+.+++++|+++||..|+..
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~d~~~~~----~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~ 194 (295)
T cd01167 120 EADILHFGSIALASEPSRSALLELLEAAKKAGVL-ISFDPNLRP----PLWRDEEEARERIAELLELADIVKLSDEELEL 194 (295)
T ss_pred cCCEEEEechhhccchHHHHHHHHHHHHHHcCCE-EEEcCCCCh----hhcCCHHHHHHHHHHHHHhCCEEEecHHHHHH
Confidence 47777776531 1 24566677777776665 999996542 122221 1222234788999999999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 163 LLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 163 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
|++ .. . ..++++.+.+++++.|++|.|.+| .+++++++.++++.++.+++|++||||+|.|+|+++|+
T Consensus 195 l~~-~~--~---~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~ 262 (295)
T cd01167 195 LFG-EE--D---PEEIAALLLLFGLKLVLVTRGADG------ALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLL 262 (295)
T ss_pred HhC-CC--C---HHHHHHHHhhcCCCEEEEecCCcc------eEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHH
Confidence 987 22 1 234556778889999999999988 78888777788888888899999999999999999999
Q ss_pred cCC-------CHHHHHHHHHHHHHHHHhc
Q 010244 243 KGS-------PMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~-------~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+ ++++|+++|++++..++++
T Consensus 263 ~g~~~~~~~~~~~~a~~~a~~~aa~~~~~ 291 (295)
T cd01167 263 SRGLLALDEDELAEALRFANAVGALTCTK 291 (295)
T ss_pred hCCcccccHHHHHHHHHHHHHhhHHHhcc
Confidence 999 9999999999998877765
No 79
>PTZ00247 adenosine kinase; Provisional
Probab=99.69 E-value=1.5e-15 Score=154.01 Aligned_cols=162 Identities=16% Similarity=0.177 Sum_probs=121.1
Q ss_pred CcCEEEEcc---cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhC
Q 010244 89 QVDVVKTGM---LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLG 165 (514)
Q Consensus 89 ~~~~i~~G~---~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (514)
+.+.+.++. ..+.+....+++.+++.+.+ +++||.. ..+.....+.+ .++++++|+++||..|++.|+|
T Consensus 159 ~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~-v~~d~~~------~~~~~~~~~~~-~~~l~~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 159 TAQLYYLEGFFLTVSPNNVLQVAKHARESGKL-FCLNLSA------PFISQFFFERL-LQVLPYVDILFGNEEEAKTFAK 230 (345)
T ss_pred hCCEEEEEEEEecccHHHHHHHHHHHHHcCCE-EEEECCc------HHHHHHHHHHH-HHHHhhCCEEEeCHHHHHHHhh
Confidence 467777653 23578888899999988776 9999621 01111111233 4788999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHh------cCCCeEEEecccCCCCCCceEEEEeCCeEEEEeeccc---CCCCCCCCcchHHHH
Q 010244 166 GMQVVTVADMCSAAKLLHN------LGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRV---NTRNTHGTGCTLASC 236 (514)
Q Consensus 166 ~~~~~~~~~~~~~a~~l~~------~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~GaGD~f~a~ 236 (514)
.... +.++..++++.+.+ .+.+.|++|.|.+| ++++++++.++++.+++ +++||+||||+|.|+
T Consensus 231 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G------~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~ag 303 (345)
T PTZ00247 231 AMKW-DTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEP------TLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGG 303 (345)
T ss_pred ccCC-CccCHHHHHHHHHhccccccCCCCEEEEecCCCc------eEEEECCEEEEEeccccCCCCccCCCChHHHHHHH
Confidence 2111 11334555666543 24789999999988 78888877777887776 478999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Q 010244 237 IAAELAKGSPMLSAVKVAKCFVETALDYS 265 (514)
Q Consensus 237 i~~~l~~g~~l~~A~~~A~~~~~~~i~~~ 265 (514)
|++.|.+|+++++|+++|+.+++.++++.
T Consensus 304 fl~~l~~g~~~~~al~~a~~aAa~~v~~~ 332 (345)
T PTZ00247 304 FLAQYANGKDIDRCVEAGHYSAQVIIQHN 332 (345)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988877753
No 80
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.69 E-value=1.5e-15 Score=151.94 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=123.1
Q ss_pred CcCEEEEccc---CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhC
Q 010244 89 QVDVVKTGML---PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLG 165 (514)
Q Consensus 89 ~~~~i~~G~~---~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (514)
+++.+.+... .+.+.+..+++.+++.+.+ +++||+.. .......+.+ ..+++++|+++||..|++.|++
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~d~~~~------~~~~~~~~~~-~~~l~~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 145 KAKYLYLEGYLLTVPPEAILLAAEHAKENGVK-IALNLSAP------FIVQRFKEAL-LELLPYVDILFGNEEEAEALAE 216 (312)
T ss_pred cCCEEEEEEEecCCCHHHHHHHHHHHHHcCCE-EEEeCCcH------HHHHHHHHHH-HHHHhhCCEEEeCHHHHHHHhC
Confidence 4676666432 3447788888888877765 99998421 0011111223 3677999999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecc-cCCCCCCCCcchHHHHHHHHHHcC
Q 010244 166 GMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSR-VNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 166 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
.+ .++..++++.+.+.+++.|++|.|..| .+++++++.++++..+ ++++||+||||+|+|+|++.+.+|
T Consensus 217 -~~---~~~~~~~a~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g 286 (312)
T cd01168 217 -AE---TTDDLEAALKLLALRCRIVVITQGAKG------AVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQG 286 (312)
T ss_pred -CC---CCChHHHHHHHHhcCCCEEEEecCCCC------eEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcC
Confidence 31 123456788888889999999999988 7777777778888877 788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|+.++..+++.
T Consensus 287 ~~~~~a~~~a~~~Aa~~v~~ 306 (312)
T cd01168 287 EPLEECIRLGSYAAAEVIQQ 306 (312)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888775
No 81
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.67 E-value=4.5e-15 Score=147.90 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=120.8
Q ss_pred CcCEEEEcccC---C--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHh
Q 010244 89 QVDVVKTGMLP---S--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASAL 163 (514)
Q Consensus 89 ~~~~i~~G~~~---~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (514)
+.+.+.++... + .+....+++.+++.+.. +++||+.+.. .+..........+++++++|+++||..|+..|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~D~~~~~~---~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l 194 (304)
T PRK09434 119 QGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGF-VSFDPNLRED---LWQDEAELRECLRQALALADVVKLSEEELCFL 194 (304)
T ss_pred CCCEEEEccccccCchHHHHHHHHHHHHHHcCCE-EEECCCCChh---hccCHHHHHHHHHHHHHhcceeeCCHHHHHHH
Confidence 35666654321 1 23445667777777765 9999975521 12222233333457789999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHh-cCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 164 LGGMQVVTVADMCSAAKLLHN-LGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 164 ~g~~~~~~~~~~~~~a~~l~~-~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
+| . ++..++++.+.+ .+++.|++|.|..| .+++++++.++++..+.+++||+||||+|+|+|+++++
T Consensus 195 ~g-~-----~~~~~~~~~l~~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~ 262 (304)
T PRK09434 195 SG-T-----SQLEDAIYALADRYPIALLLVTLGAEG------VLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLS 262 (304)
T ss_pred hC-C-----CCHHHHHHHHHhhcCCcEEEEEecCCc------eEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 87 2 234567778876 67889999999988 77777777788888888889999999999999999999
Q ss_pred cCC------CHHHHHHHHHHHHHHHHhc
Q 010244 243 KGS------PMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~------~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+ ++++|+++|+.++..+++.
T Consensus 263 ~g~~~~~~~~~~~a~~~a~~~Aa~~v~~ 290 (304)
T PRK09434 263 QAGLWTDEAELAEIIAQAQACGALATTA 290 (304)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHHHcc
Confidence 996 8999999999998777765
No 82
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=99.65 E-value=2.5e-15 Score=145.44 Aligned_cols=149 Identities=23% Similarity=0.333 Sum_probs=123.0
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCC--CHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 320 ITDAVKAALEGGATIIQLREKDA--DTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
....++++++.|++.+++|.+.. +..++.+.++++.++|+++|+++++.- .++|+|+++.+ .
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~--------~~~Gvh~~~~~--~------ 155 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMM--------YPRGPHIDDRD--P------ 155 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEE--------eccCccccccc--H------
Confidence 44568899999999999999943 445677889999999999999999832 26799987621 1
Q ss_pred cCCCcEEEEecCCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-------cccH
Q 010244 398 LGPDKIIGVSCKTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-------ISNA 469 (514)
Q Consensus 398 ~~~~~~ig~s~~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-------~~~~ 469 (514)
++..+ ++.+.+.|+|||.++ |+ .+++.++++++..++||+++|||+ .+++
T Consensus 156 -----------~~~~~~~~~a~~~GADyikt~--~~---------~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i 213 (258)
T TIGR01949 156 -----------ELVAHAARLGAELGADIVKTP--YT---------GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMI 213 (258)
T ss_pred -----------HHHHHHHHHHHHHCCCEEecc--CC---------CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHH
Confidence 12334 577889999999764 21 378999999988899999999999 6789
Q ss_pred HHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
.+++++|++ |++++++||+++||.+.+++|++.+++.
T Consensus 214 ~~~~~aGa~---Gia~g~~i~~~~dp~~~~~~l~~~i~~~ 250 (258)
T TIGR01949 214 KDAMEAGAA---GVAVGRNIFQHDDPVGITKAVCKIVHEN 250 (258)
T ss_pred HHHHHcCCc---EEehhhHhhcCCCHHHHHHHHHHHHhCC
Confidence 999999999 9999999999999999999999998763
No 83
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2e-15 Score=136.31 Aligned_cols=159 Identities=23% Similarity=0.256 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCc-eEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGV-PLLINDRIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~-~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
++..+.+++++++|++.++++.++..+.+.++.+.+-.+-+ -.|. +++-.++++.+.++|++++..|..+.++.+...
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~-lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~a~ 103 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEA-LIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAKAAN 103 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCccc-EEccccccCHHHHHHHHHcCCCEEECCCCCHHHHHHHH
Confidence 57889999999999999999999998877555433322200 0111 444456889999999999999998877666666
Q ss_pred hcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccC-CHHHHHHHHHcC-CCCEEEECCCCcccHHHHHH
Q 010244 397 LLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTV-GLDGLKTVCLAS-KLPVVAIGGIGISNASDVMK 474 (514)
Q Consensus 397 ~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~-g~~~l~~~~~~~-~~pv~a~GGi~~~~~~~~~~ 474 (514)
.++...++| |.|+.|+..|+++|++.+ ++|| .+.. |..+++.+..++ ++++++.|||+++|+.+|++
T Consensus 104 ~~~ip~~PG--~~TptEi~~Ale~G~~~l---K~FP------a~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~N~~~yla 172 (211)
T COG0800 104 RYGIPYIPG--VATPTEIMAALELGASAL---KFFP------AEVVGGPAMLKALAGPFPQVRFCPTGGVSLDNAADYLA 172 (211)
T ss_pred hCCCcccCC--CCCHHHHHHHHHcChhhe---eecC------ccccCcHHHHHHHcCCCCCCeEeecCCCCHHHHHHHHh
Confidence 655566666 999999999999999999 9999 4444 788999999888 79999999999999999999
Q ss_pred CCCCCCceEEEeecccC
Q 010244 475 IGVSNLKGVAVVSALFD 491 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~~ 491 (514)
+|+. ++++||-+..
T Consensus 173 ~gv~---avG~Gs~l~~ 186 (211)
T COG0800 173 AGVV---AVGLGSWLVP 186 (211)
T ss_pred CCce---EEecCccccC
Confidence 9998 9998998884
No 84
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.63 E-value=2.2e-14 Score=151.76 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=114.3
Q ss_pred CcCEEEE-ccc-CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCC
Q 010244 89 QVDVVKT-GML-PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGG 166 (514)
Q Consensus 89 ~~~~i~~-G~~-~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~ 166 (514)
+++.+.+ ++. ...+.+..+++.+++.+.+ +++||... . + ..++.+|+++||..|++.|+|
T Consensus 143 ~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~-vv~Dp~~~-----~---------~--~~~~~~dil~pN~~Ea~~l~g- 204 (473)
T PRK11316 143 SIGALVLSDYAKGALASVQAMIQLARKAGVP-VLIDPKGT-----D---------F--ERYRGATLLTPNLSEFEAVVG- 204 (473)
T ss_pred cCCEEEEecCCccchhHHHHHHHHHHhcCCe-EEEeCCCC-----C---------c--cccCCCeEECcCHHHHHHHhC-
Confidence 4666665 332 1224567788888887765 99998421 0 0 235678999999999999998
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCCeEEEecccCCCCCCceEEEEeCCe-EEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 167 MQVVTVADMCSAAKLLH-NLGPRTVLVKGGDLPDSSDAVDIFFDGED-FHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 167 ~~~~~~~~~~~~a~~l~-~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
. ..+.++..+.++++. +.|++.|+||.|..| .+++++++ .++++..+++++|++||||+|+|+|+++|++|
T Consensus 205 ~-~~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G------~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g 277 (473)
T PRK11316 205 K-CKDEAELVEKGMKLIADYDLSALLVTRSEQG------MTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAG 277 (473)
T ss_pred C-CCCHHHHHHHHHHHHHhcCCCEEEEEecCCC------cEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcC
Confidence 3 234455566666664 678999999999877 66666554 47788888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|++++..+++.
T Consensus 278 ~~~~~al~~A~a~Aa~~v~~ 297 (473)
T PRK11316 278 NSLEEACALANAAAGVVVGK 297 (473)
T ss_pred CCHHHHHHHHHHHHHhhccc
Confidence 99999999999886665543
No 85
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.63 E-value=2.6e-15 Score=139.11 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCc------eEEEcCcHHHHHhCCCCeEEeCCCCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGV------PLLINDRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~------~l~v~~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
++..+.++++.++|++++++...+....+ .++.+++ ++.. +++-.+..+.+.++||+++..|..+...
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~~~~~---~I~~l~~---~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTPAALE---AIRLIAK---EVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccHHH---HHHHHHH---HCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 57899999999999999999987765444 3333333 3332 2222456788999999999999887765
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcccHH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGISNAS 470 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~~~~ 470 (514)
....+..+...++| |.|++|+.+|.++|+|++ ++||... ..|+.+++.++.++ ++|+++.|||+++|+.
T Consensus 101 i~~a~~~~i~~iPG--~~TptEi~~a~~~Ga~~v---KlFPa~~-----~gg~~~lk~l~~p~p~~~~~ptGGV~~~ni~ 170 (212)
T PRK05718 101 LKAAQEGPIPLIPG--VSTPSELMLGMELGLRTF---KFFPAEA-----SGGVKMLKALAGPFPDVRFCPTGGISPANYR 170 (212)
T ss_pred HHHHHHcCCCEeCC--CCCHHHHHHHHHCCCCEE---EEccchh-----ccCHHHHHHHhccCCCCeEEEeCCCCHHHHH
Confidence 55555444455555 999999999999999999 8898321 12799999999998 7999999999999999
Q ss_pred HHHHCCCCCCceEEEeecccCC
Q 010244 471 DVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+|+++|+. .++.||.++..
T Consensus 171 ~~l~ag~v---~~vggs~L~~~ 189 (212)
T PRK05718 171 DYLALPNV---LCIGGSWMVPK 189 (212)
T ss_pred HHHhCCCE---EEEEChHhCCc
Confidence 99999977 77777777753
No 86
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.63 E-value=8.2e-15 Score=145.67 Aligned_cols=160 Identities=25% Similarity=0.339 Sum_probs=124.5
Q ss_pred CcCEEEEcc-----cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHh
Q 010244 89 QVDVVKTGM-----LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASAL 163 (514)
Q Consensus 89 ~~~~i~~G~-----~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (514)
..+.+.++. ..+.+..+.+.+.+++... +||++.+..+ ....+.+. ++++.+|+++||..|+..|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~-~~l~~~dil~~n~~E~~~l 196 (301)
T PF00294_consen 127 EADILHLSGVSLPEGIPEDLLEALAKAAKKNGP----FDPVFRDPSW-----DDLREDLK-ELLPYADILKPNEEEAEAL 196 (301)
T ss_dssp TESEEEEESGHCSTTSHHHHHHHHHHHHHHTTE----EEEEEEGGGS-----HHHHHHHH-HHHHTSSEEEEEHHHHHHH
T ss_pred cccceeecccccccccccceeeecccccccccc----cccccccccc-----cccchhhh-hhccccchhcccccccccc
Confidence 477777766 2234556666666666552 3443332111 11233444 6679999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEee-cccCCCCCCCCcchHHHHHHHHHH
Q 010244 164 LGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRS-SRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 164 ~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
++ ....+.++..++++++..++++.+++|.|..| .++++.++.+++++ ++.+++|++|+||+|.|+|+++|.
T Consensus 197 ~~-~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G------~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~ 269 (301)
T PF00294_consen 197 TG-SKIDDPEDALAALRELQARGVKIVIVTLGEDG------ALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLL 269 (301)
T ss_dssp HT-CSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGE------EEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHH
T ss_pred cc-ccccchhhhhccccccchhhhhhhhccccccC------cccccccccccccccccccccceeccchhhhHHHHHHHH
Confidence 98 55567788888999999999999999999988 78888888788877 567889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhcc
Q 010244 243 KGSPMLSAVKVAKCFVETALDYS 265 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~~~ 265 (514)
+|+++++|+++|+.+++.+++..
T Consensus 270 ~~~~~~~a~~~a~~~aa~~v~~~ 292 (301)
T PF00294_consen 270 SGMSLEEALKFANAAAALKVQQP 292 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTSS
T ss_pred cCCCHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999988888763
No 87
>PLN02323 probable fructokinase
Probab=99.63 E-value=2.1e-14 Score=144.77 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=116.4
Q ss_pred cCEEEEcccC-----CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 90 VDVVKTGMLP-----STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 90 ~~~i~~G~~~-----~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
++.+..+... .......+++.+++.+.+ +++||.++.. .+.+........+.+++++|+++||..|+..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~---~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 212 (330)
T PLN02323 137 AKIFHYGSISLITEPCRSAHLAAMKIAKEAGAL-LSYDPNLRLP---LWPSAEAAREGIMSIWDEADIIKVSDEEVEFLT 212 (330)
T ss_pred CCEEEEechhccCchHHHHHHHHHHHHHHcCCE-EEEcCCCChh---hccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHh
Confidence 5666555421 123445667777777765 9999965421 111222233333467889999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
| ....+.++ +. ++...|++.|++|.|.+| .+++++++.++++..+++++||+||||+|.|+|++.|++|
T Consensus 213 g-~~~~~~~~---~~-~~~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g 281 (330)
T PLN02323 213 G-GDDPDDDT---VV-KLWHPNLKLLLVTEGEEG------CRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKD 281 (330)
T ss_pred C-CCCccHHH---HH-HHHhcCCCEEEEecCCCc------eEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcC
Confidence 8 33222222 22 444578999999999988 7777776666788878888999999999999999999999
Q ss_pred CC-------HHHHHHHHHHHHHHHHhc
Q 010244 245 SP-------MLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~-------l~~A~~~A~~~~~~~i~~ 264 (514)
++ +++|+++|++++..++++
T Consensus 282 ~~~~~~~~~l~~al~~a~a~Aa~~v~~ 308 (330)
T PLN02323 282 LSLLEDEERLREALRFANACGAITTTE 308 (330)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHhc
Confidence 86 899999999998877775
No 88
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.63 E-value=1e-14 Score=143.76 Aligned_cols=149 Identities=23% Similarity=0.213 Sum_probs=117.3
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++++.++.. .++....+++.+++.+.+ +++|+... .. ..+ +.+++++|+++||..|++.+++ ..
T Consensus 126 ~~~~v~i~~~-~~~~~~~~~~~~~~~g~~-v~~~~~~~-----~~------~~~-~~~~~~~dil~~n~~e~~~l~~-~~ 190 (284)
T cd01945 126 GADAVLVDGR-QPEAALHLAQEARARGIP-IPLDLDGG-----GL------RVL-EELLPLADHAICSENFLRPNTG-SA 190 (284)
T ss_pred cCCEEEEcCC-CHHHHHHHHHHHHHcCCC-eeEeccCC-----cc------cch-HHHhccCCEEEeChhHHhhhcC-CC
Confidence 5788888765 345667788888877765 66664211 00 112 3677899999999999999987 21
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEe-CCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD-GEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPM 247 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l 247 (514)
+. ++++.+.+.+++.|++|.|.+| .+++. +++.++++..+++++|++||||+|+|+|++.|++|+++
T Consensus 191 -----~~-~~~~~l~~~~~~~vivt~G~~G------~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~~ 258 (284)
T cd01945 191 -----DD-EALELLASLGIPFVAVTLGEAG------CLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMPL 258 (284)
T ss_pred -----HH-HHHHHHHhcCCcEEEEEECCCC------eEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCCH
Confidence 11 5667777889999999999988 77777 56677788878889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010244 248 LSAVKVAKCFVETALDY 264 (514)
Q Consensus 248 ~~A~~~A~~~~~~~i~~ 264 (514)
++|+++|++++..+++.
T Consensus 259 ~~al~~a~~~Aa~~~~~ 275 (284)
T cd01945 259 REALRFASAAAALKCRG 275 (284)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998877775
No 89
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.63 E-value=6.5e-15 Score=144.76 Aligned_cols=153 Identities=21% Similarity=0.343 Sum_probs=119.2
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.++.. +++....+++.+++. . ++++||.. ++.....+.+. ++++++|+++||..|++.|++ .
T Consensus 114 ~~~~v~~~~~-~~~~~~~~~~~~~~~-~-~v~~D~~~-------~~~~~~~~~~~-~~l~~~d~~~~n~~E~~~l~g-~- 180 (277)
T cd01946 114 DSEFVFLGNI-APELQREVLEQVKDP-K-LVVMDTMN-------FWISIKPEKLK-KVLAKVDVVIINDGEARQLTG-A- 180 (277)
T ss_pred cCCEEEECCC-CHHHHHHHHHHHHhC-C-EEEEccHH-------HhhhhhHHHHH-HHhccCCEEeCCHHHHHHHhC-C-
Confidence 5788888876 567777788888765 4 49999731 12111223343 688899999999999999997 2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccC-CCCCCCCcchHHHHHHHHHHcC---
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVN-TRNTHGTGCTLASCIAAELAKG--- 244 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~GaGD~f~a~i~~~l~~g--- 244 (514)
++..++++.+.+++++.|++|.|..| .+++.+++.++++..+++ ++|++|+||+|+|+|++.|.+|
T Consensus 181 ----~~~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~~ 250 (277)
T cd01946 181 ----ANLVKAARLILAMGPKALIIKRGEYG------ALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKDT 250 (277)
T ss_pred ----chHHHHHHHHHHcCCCEEEEecCCCc------EEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCCc
Confidence 35667788888999999999999987 777777777777777765 7899999999999999999987
Q ss_pred --CCHHHHHHHHHHHHHHHHhc
Q 010244 245 --SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 --~~l~~A~~~A~~~~~~~i~~ 264 (514)
.++++|+++|+.++..+++.
T Consensus 251 ~~~~~~~a~~~a~~~aa~~~~~ 272 (277)
T cd01946 251 SEANMRRAIIYGSAMASFCVED 272 (277)
T ss_pred chhhHHHHHHHhHHHHhhhhhh
Confidence 46889999999987666554
No 90
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=99.62 E-value=6.2e-15 Score=143.60 Aligned_cols=152 Identities=23% Similarity=0.340 Sum_probs=127.9
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.+++++|.+.||+|.++.+.++.++..+++.++|+.+|+.+ +.++| +++.. .
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v--------E~ElG----~i~g~------------e 144 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV--------EAEVG----TIGGE------------E 144 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE--------EEecC----cccCc------------C
Confidence 357889999999999999999999999999999999999999988 33343 22110 2
Q ss_pred CcEEEEec-CCHHHHHHhhhCCCcEEEec--cc---cCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECC--CCcccHHH
Q 010244 401 DKIIGVSC-KTPEEAHQAWIDGANYIGCG--GV---YPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGG--IGISNASD 471 (514)
Q Consensus 401 ~~~ig~s~-~~~~e~~~a~~~g~d~v~~~--~v---f~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GG--i~~~~~~~ 471 (514)
+.++|.|+ ||++|+.++.+.|+||+.+| ++ |+|.+| .++++.|+++++.+ ++|+++.|| |+.+++.+
T Consensus 145 d~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k----~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~ 220 (293)
T PRK07315 145 DGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWE----GLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQE 220 (293)
T ss_pred ccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCCC----cCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHH
Confidence 34567777 89999999999999999998 99 887544 58999999999998 699999999 99999999
Q ss_pred HHHCCCCCCceEEEeecccCCCCHHHHHHHHHHH
Q 010244 472 VMKIGVSNLKGVAVVSALFDRECILPESKKLHAV 505 (514)
Q Consensus 472 ~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~ 505 (514)
+.+.|+. +|.+.+.+.. ++.+.++++.+.
T Consensus 221 ~i~~Gi~---KiNv~T~i~~--~~~~~~~~~~~~ 249 (293)
T PRK07315 221 AIKLGVA---KVNVNTECQI--AFANATRKFARD 249 (293)
T ss_pred HHHcCCC---EEEEccHHHH--HHHHHHHHHHHh
Confidence 9999999 9999999985 666666665543
No 91
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=99.62 E-value=4e-15 Score=142.37 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=124.0
Q ss_pred CHHHHHHHHHhCCCCEE--EEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 319 SITDAVKAALEGGATII--QLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v--~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
.....++++++.|++.+ |+|.+..+..+..+.++++.+.|++++++++++.++ +|+|+++.
T Consensus 77 ~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--------~g~~~~~~--------- 139 (235)
T cd00958 77 VLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--------RGPAVKNE--------- 139 (235)
T ss_pred hhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--------cCCcccCc---------
Confidence 44556889999999877 999998888888889999999999999999997655 48898771
Q ss_pred hcCCCcEEEEecCCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCc-------cc
Q 010244 397 LLGPDKIIGVSCKTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGI-------SN 468 (514)
Q Consensus 397 ~~~~~~~ig~s~~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~-------~~ 468 (514)
.+.++.++ ++.+.+.|+|||.++ +| .+++.++++++.+++||+++|||+. ++
T Consensus 140 ---------~~~~~i~~~~~~a~~~GaD~Ik~~---~~--------~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~ 199 (235)
T cd00958 140 ---------KDPDLIAYAARIGAELGADIVKTK---YT--------GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKM 199 (235)
T ss_pred ---------cCHHHHHHHHHHHHHHCCCEEEec---CC--------CCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHH
Confidence 23444554 667889999999663 22 2789999999988999999999965 66
Q ss_pred HHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHH
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVL 506 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~ 506 (514)
+.+++++|++ |+++|++||+++||.+.++++++.+
T Consensus 200 ~~~~~~~Ga~---gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 200 VYDAMEAGAA---GVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HHHHHHcCCc---EEEechhhhcCCCHHHHHHHHHHHh
Confidence 8999999999 9999999999999999999998875
No 92
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.61 E-value=3.3e-14 Score=147.04 Aligned_cols=159 Identities=18% Similarity=0.084 Sum_probs=119.3
Q ss_pred CcCEEEE-ccc--CC--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHh
Q 010244 89 QVDVVKT-GML--PS--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASAL 163 (514)
Q Consensus 89 ~~~~i~~-G~~--~~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (514)
+.+.+.+ |+. .+ .+.+..+++.+++.+.+ +++||- +- ... ....+.+.+.+++++|++++|+.|+..|
T Consensus 224 ~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~-v~~d~s----~~-~~~-~~~~~~l~~~ll~~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 224 KSRVLVVEGYLWELPQTIEAIAQACEEAHRAGAL-VAVTAS----DV-SCI-ERHRDDFWDVMGNYADILFANSDEARAL 296 (426)
T ss_pred cCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCE-EEEECC----Cc-chh-hhhHHHHHHHHHhcCCEEEeCHHHHHHH
Confidence 4677776 542 12 25667777888887765 999861 10 011 1112334445678999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHc
Q 010244 164 LGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAK 243 (514)
Q Consensus 164 ~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~ 243 (514)
+|.... ++..++++.+. .+++.|++|.|.+| .+++.+++.++++..+++++||+||||+|+|+|++.+.+
T Consensus 297 ~g~~~~---~~~~~a~~~L~-~~~~~VVVT~G~~G------a~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~ 366 (426)
T PLN02813 297 CGLGSE---ESPESATRYLS-HFCPLVSVTDGARG------SYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLR 366 (426)
T ss_pred hCCCCC---CCHHHHHHHHH-cCCCEEEEEeCCCC------eEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHc
Confidence 873211 23445565554 57899999999988 777788888888888888999999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHHHHhc
Q 010244 244 GS-PMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 244 g~-~l~~A~~~A~~~~~~~i~~ 264 (514)
|+ ++++|+++|++++..++++
T Consensus 367 G~~~l~~al~~A~a~Aa~~v~~ 388 (426)
T PLN02813 367 GVSDLRGMGELAARVAATVVGQ 388 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHHcc
Confidence 99 9999999999998877775
No 93
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=99.61 E-value=8.3e-15 Score=137.85 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEE------cCCCCHHHHHHHHHHHHHHHh-hcCceEEEcC---cHHHHHhCCCCeEEeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLR------EKDADTRGFLEAAKACLQICC-VHGVPLLIND---RIDIALACDADGVHLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr------~~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~~---~~~~a~~~ga~gvhl~~~ 387 (514)
..+.+.++.+.++|++.+++- .+... .-.+.++++++... ...+.+++.+ +++.+.++|++|++++..
T Consensus 11 ~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~--~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 11 ARLGEEVKAVEEAGADWIHVDVMDGHFVPNLT--FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcc--cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccC
Confidence 356788888999999999993 12222 12344445543221 1113455554 456778999999666543
Q ss_pred C--CCHHHHHhh--cCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-----CCE
Q 010244 388 D--MPARTARAL--LGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-----LPV 458 (514)
Q Consensus 388 ~--~~~~~~~~~--~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-----~pv 458 (514)
. .....++.. .+....++.+++++.|..++...++||+.+++++++.++....+.+++.++++++..+ +|+
T Consensus 89 ~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i 168 (210)
T TIGR01163 89 ASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILI 168 (210)
T ss_pred CchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceE
Confidence 2 222233322 4456667778998888877777889999999999988876545566777777766543 799
Q ss_pred EEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHH
Q 010244 459 VAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKL 502 (514)
Q Consensus 459 ~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~ 502 (514)
++.|||+++|+.++++.|++ ++++||+|++++||.++++++
T Consensus 169 ~v~GGI~~env~~l~~~gad---~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 169 EVDGGVNDDNARELAEAGAD---ILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred EEECCcCHHHHHHHHHcCCC---EEEEChHHhCCCCHHHHHHHh
Confidence 99999999999999999999 999999999999999998876
No 94
>PLN02967 kinase
Probab=99.61 E-value=5.5e-14 Score=147.80 Aligned_cols=164 Identities=11% Similarity=0.053 Sum_probs=113.7
Q ss_pred CcCEEEEcccC-----CHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCC-ChhHHHHHHHhhcccceEEcCCHHHHHH
Q 010244 89 QVDVVKTGMLP-----STDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLA-GPSTITGLRENLLPMADIVTPNVKEASA 162 (514)
Q Consensus 89 ~~~~i~~G~~~-----~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~-~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (514)
+++++.+|... ..+....+++.+++.+.. ++|||+++. .++ +..........+++++|||++|..|+..
T Consensus 335 ~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~-VsFDpNlR~----~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~ 409 (581)
T PLN02967 335 EAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGV-IFYDLNLPL----PLWSSSEETKSFIQEAWNLADIIEVTKQELEF 409 (581)
T ss_pred CCCEEEEeCchhcccchHHHHHHHHHHHHHCCCE-EEEECCCCc----ccccchHHHHHHHHHHHHhCCEEEECHHHHHH
Confidence 46777776642 235677778888887765 999998773 233 2221222334788999999999999999
Q ss_pred hhCCCCCCC--HH---------HHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCe---EEEEeecccC--CCCC
Q 010244 163 LLGGMQVVT--VA---------DMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGED---FHELRSSRVN--TRNT 226 (514)
Q Consensus 163 L~g~~~~~~--~~---------~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~---~~~~~~~~~~--~~d~ 226 (514)
|+|...... .. ...+.++.+...+++.|+||.|..| ++++..+. ...++..+++ ++||
T Consensus 410 LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~G------a~~~~~~~~~~v~~~~a~~V~V~vVDT 483 (581)
T PLN02967 410 LCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSK------IHYYTKEHNGAVHGMEDAPITPFTSDM 483 (581)
T ss_pred HhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECccc------eEEEECCCceeEeeccCCCCCCCCCCC
Confidence 998321110 00 0123456676778999999999987 67766543 2233444555 4899
Q ss_pred CCCcchHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHh
Q 010244 227 HGTGCTLASCIAAELAKG-------SPMLSAVKVAKCFVETALD 263 (514)
Q Consensus 227 ~GaGD~f~a~i~~~l~~g-------~~l~~A~~~A~~~~~~~i~ 263 (514)
+||||+|.|+|++.|.+| .++++|+++|+++++.+..
T Consensus 484 TGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt 527 (581)
T PLN02967 484 SASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQW 527 (581)
T ss_pred CchhHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999999974 6799999999999444433
No 95
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.61 E-value=3.9e-14 Score=140.10 Aligned_cols=157 Identities=22% Similarity=0.131 Sum_probs=112.3
Q ss_pred CcCEEEEccc-C-CHH-HHHHHHHHHhc--CCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHh
Q 010244 89 QVDVVKTGML-P-STD-LVKVLLQSLSE--FPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASAL 163 (514)
Q Consensus 89 ~~~~i~~G~~-~-~~~-~~~~~~~~~~~--~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (514)
+++.+.++.. . ... ....+.+++++ .+. ++++||+.+.. .+.. ...+.+++++|+++||..|++.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~D~~~~~~----~~~~----~~~~~~l~~~d~~~~n~~E~~~l 195 (289)
T cd01944 125 PYDYVYLSGYTLASENASKVILLEWLEALPAGT-TLVFDPGPRIS----DIPD----TILQALMAKRPIWSCNREEAAIF 195 (289)
T ss_pred CCCEEEEeCccccCcchhHHHHHHHHHhccCCC-EEEEcCccccc----ccCH----HHHHHHHhcCCEEccCHHHHHHH
Confidence 5677765432 1 111 22333344333 233 49999965421 1222 23346788999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEe-CCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 164 LGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD-GEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 164 ~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
+| .... +...+++++.+.+.+.|++|.|..| .+++. +++.++.+.++++++|++|+||+|+|+|++++.
T Consensus 196 ~g-~~~~---~~~~~~~~~~~~~~~~vvvt~G~~G------a~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~ 265 (289)
T cd01944 196 AE-RGDP---AAEASALRIYAKTAAPVVVRLGSNG------AWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLA 265 (289)
T ss_pred hC-CCCc---chHHHHHHHHhccCCeEEEEECCCc------EEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHH
Confidence 98 3222 1234467777888899999999987 77777 445667787888889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhc
Q 010244 243 KGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+|+++++|+++|++++..++++
T Consensus 266 ~g~~~~~a~~~a~a~aa~~~~~ 287 (289)
T cd01944 266 KGMSLADAVLLANAAAAIVVTR 287 (289)
T ss_pred cCCCHHHHHHHHHHHHHhhhcc
Confidence 9999999999999997776654
No 96
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=4.1e-14 Score=137.41 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=117.2
Q ss_pred CcCEEEE-----cccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHh
Q 010244 89 QVDVVKT-----GMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASAL 163 (514)
Q Consensus 89 ~~~~i~~-----G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (514)
+++++++ |.+. .++.+++++++.+.+ +.+||-.. + + +.+..+++||||..|++..
T Consensus 143 ~~~~vVLSDY~KG~L~---~~q~~I~~ar~~~~p-VLvDPKg~----------D----f--~~Y~GAtLiTPN~~E~~~~ 202 (467)
T COG2870 143 SFDALVLSDYAKGVLT---NVQKMIDLAREAGIP-VLVDPKGK----------D----F--EKYRGATLITPNLKEFEEA 202 (467)
T ss_pred cCCEEEEeccccccch---hHHHHHHHHHHcCCc-EEECCCCc----------c----h--hhhCCCeecCCCHHHHHHH
Confidence 5787776 3332 278899999999886 99998322 1 1 3467899999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHh-cCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 164 LGGMQVVTVADMCSAAKLLHN-LGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 164 ~g~~~~~~~~~~~~~a~~l~~-~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
.| .... .+++.+.+++|.+ .+...+++|.++.| ..++.+++..++|.....+.|.|||||+..|.|++.|+
T Consensus 203 vg-~~~~-e~el~~~g~kL~~~~~L~alLvTRsE~G------MtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~la 274 (467)
T COG2870 203 VG-KCKS-EEELEERGQKLKEELDLSALLVTRSEKG------MTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALA 274 (467)
T ss_pred Hc-cccc-HHHHHHHHHHHHHhhCcceEEEEeccCC------ceeecCCcccccchhheeeeeccCCCchHHHHHHHHHH
Confidence 98 3332 3667777788854 57789999999977 66777666688898888889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHh
Q 010244 243 KGSPMLSAVKVAKCFVETALD 263 (514)
Q Consensus 243 ~g~~l~~A~~~A~~~~~~~i~ 263 (514)
.|.++++|+.+|+.++..++.
T Consensus 275 aG~s~~eAc~lAN~AagiVVg 295 (467)
T COG2870 275 AGASLEEACELANAAAGIVVG 295 (467)
T ss_pred cCCCHHHHHHHhhhhcceEEe
Confidence 999999999999999554443
No 97
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.60 E-value=4.3e-14 Score=137.85 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=117.3
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.++.....+....+++.+++.+.+ +++||.... .. +.+ +.++++++++.+|..|..
T Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~-------~~---~~~-~~~~~~~d~~~~~~~~~~------- 172 (264)
T cd01940 112 QFDLVHTGIYSHEGHLEKALQALVGAGAL-ISFDFSDRW-------DD---DYL-QLVCPYVDFAFFSASDLS------- 172 (264)
T ss_pred cCCEEEEcccccHHHHHHHHHHHHHcCCE-EEEcCcccC-------CH---HHH-HhhcccCCEEEechhhcC-------
Confidence 57888887654456778888888887765 999985321 11 122 367899999999977642
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCC-H
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSP-M 247 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~-l 247 (514)
.++..++++.+.+++++.|++|.|.+| .+++.+++.++++..+++++||+||||+|.|+|++.+.+|++ +
T Consensus 173 ---~~~~~~~~~~l~~~~~~~vvvT~G~~G------~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~ 243 (264)
T cd01940 173 ---DEEVKAKLKEAVSRGAKLVIVTRGEDG------AIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGTAI 243 (264)
T ss_pred ---cchHHHHHHHHHHcCCCEEEEEECCCC------eEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCchH
Confidence 124556777888889999999999988 777777777778888888899999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010244 248 LSAVKVAKCFVETALDY 264 (514)
Q Consensus 248 ~~A~~~A~~~~~~~i~~ 264 (514)
++|+++|+.++..+++.
T Consensus 244 ~~al~~a~~~aa~~~~~ 260 (264)
T cd01940 244 AEAMRQGAQFAAKTCGH 260 (264)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999997776654
No 98
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.59 E-value=7.4e-14 Score=139.63 Aligned_cols=144 Identities=28% Similarity=0.296 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCCCCCHHHHHHHHH
Q 010244 101 TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQVVTVADMCSAAK 180 (514)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~~~~~~~~~~~a~ 180 (514)
++....+++.+++++.. +.+||+.+.. ++. ......+++.+|++++|..|++.|+|. . ++..+...
T Consensus 144 ~~~~~~~~~~a~~~g~~-v~~d~~~~~~----~~~----~~~~~~~l~~~d~~~~n~~E~~~l~g~--~---~~~~~~~~ 209 (311)
T COG0524 144 PEALLAALELAKAAGVT-VSFDLNPRPA----LWD----RELLEELLALADILFPNEEEAELLTGL--E---EDAEAAAA 209 (311)
T ss_pred hHHHHHHHHHHHHcCCe-EEEecCCCcc----ccc----hhhHHHHHhhCCEEeCCHHHHHHHhCC--C---ccHHHHHH
Confidence 37888899999998876 9999876632 111 233447889999999999999999983 1 22333336
Q ss_pred HHHhcCCCeEEEecccCCCCCCceEEEEeCCe---EEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 010244 181 LLHNLGPRTVLVKGGDLPDSSDAVDIFFDGED---FHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPMLSAVKVAKCF 257 (514)
Q Consensus 181 ~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~ 257 (514)
.++..+.+.|++|.|.+| .+++++++ ....+.++++++||+||||+|.|+|++.+.+|+++++|+++|+++
T Consensus 210 ~~~~~~~~~vvvt~G~~G------a~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~a~a~ 283 (311)
T COG0524 210 LLLAKGVKTVVVTLGAEG------AVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRFANAA 283 (311)
T ss_pred HHhhcCCCEEEEEeCCCc------EEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 678889999999999988 78887644 222335667789999999999999999999999999999999988
Q ss_pred HHHHHhc
Q 010244 258 VETALDY 264 (514)
Q Consensus 258 ~~~~i~~ 264 (514)
++.+++.
T Consensus 284 aa~~~~~ 290 (311)
T COG0524 284 AALAVTR 290 (311)
T ss_pred hhhhhcc
Confidence 6666554
No 99
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=5.9e-14 Score=128.35 Aligned_cols=211 Identities=21% Similarity=0.211 Sum_probs=134.4
Q ss_pred cccccccccCCCCCeEEEEecCCCCChhcHHHHHHHHHHcCceeeecceEeeeecCC----Cee-e--eE-ecCHHHHHH
Q 010244 8 ASATTTEQYKMKIPHVLTVAGSDSGAGAGIQADLKACAARGVYCSTVITAVTAQNTA----GVQ-G--VN-IVPEDFVAA 79 (514)
Q Consensus 8 ~~~r~~~~~k~~~~~vL~i~g~d~~ggag~~a~~~~l~~~g~~~~~~~t~~~~~n~~----~~~-~--~~-~~~~~~~~~ 79 (514)
.|+-.++-|||..|+|.+|||+-.|.||...|++.+++- |+-+..+....+.. .|. . ++ .++.+.-.+
T Consensus 18 iP~L~~~kHKGq~GrvgViGGc~eYTGAPYFaa~sa~~~----GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~l~~~~av~ 93 (306)
T KOG3974|consen 18 IPPLLSNKHKGQSGRVGVIGGCLEYTGAPYFAAISALRV----GADLSHIFCEPEAAVVIKSYSPDLIVHPVLDQENAVD 93 (306)
T ss_pred cCCccCcccCCCccceEEEcccccccCccHHHHHHHHHh----ccceeeeeechhHHHHHhhcCCceeecccccCCchHh
Confidence 466678889999999999999999999999999999987 33333222111111 111 0 11 112111233
Q ss_pred HHHHHHcCCCcCEEEEcccCCHHH---HHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCC
Q 010244 80 QLKSVLSDMQVDVVKTGMLPSTDL---VKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPN 156 (514)
Q Consensus 80 ~l~~l~~~~~~~~i~~G~~~~~~~---~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN 156 (514)
.++.+++++++.+|..|+..++.. +..++++++..+.| +|+| ++|..++.+.... +. .-++ ..|+|||
T Consensus 94 ~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP-~VID-----aDGL~Lv~q~~e~-l~-~~~~-~viLTPN 164 (306)
T KOG3974|consen 94 IIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVP-LVID-----ADGLWLVEQLPER-LI-GGYP-KVILTPN 164 (306)
T ss_pred HHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCc-EEEc-----CCceEehhhchhh-hh-ccCc-eeeeCCc
Confidence 445566777777788888887755 45566666766654 9999 8888777665532 22 1122 2689999
Q ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCC-eEEEEeecccCCCCCCCCcchH
Q 010244 157 VKEASALLGG--MQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGE-DFHELRSSRVNTRNTHGTGCTL 233 (514)
Q Consensus 157 ~~E~~~L~g~--~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~GaGD~f 233 (514)
.-|+++|++. .+.++...+...+.++ ....|+-||.. +.+..++ +....+..+- ...-.|-||.+
T Consensus 165 vvEFkRLcd~~l~~~d~~~~~~~L~~~l---~nv~vvqKG~~--------D~ils~~~ev~~~s~eGs-~kRcGGQGDiL 232 (306)
T KOG3974|consen 165 VVEFKRLCDAELDKVDSHSQMQHLAAEL---MNVTVVQKGES--------DKILSPDSEVRVCSTEGS-LKRCGGQGDIL 232 (306)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHh---cCeEEEEecCC--------ceeeCCCCeeEEccCCCC-ccccCCCcchh
Confidence 9999999973 2223334444444433 44567778766 5454444 4444443332 34678999999
Q ss_pred HHHHHHHHHc
Q 010244 234 ASCIAAELAK 243 (514)
Q Consensus 234 ~a~i~~~l~~ 243 (514)
+|.++.+++.
T Consensus 233 aGsla~fl~w 242 (306)
T KOG3974|consen 233 AGSLATFLSW 242 (306)
T ss_pred hhHHHHHHHH
Confidence 9999988853
No 100
>PLN02548 adenosine kinase
Probab=99.58 E-value=5.2e-14 Score=142.04 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=113.4
Q ss_pred CcCEEEEc-c--cCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhC
Q 010244 89 QVDVVKTG-M--LPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLG 165 (514)
Q Consensus 89 ~~~~i~~G-~--~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (514)
+.+.+.++ + ..+++....+.+.+++.+.. +++|+ +. .++.....+.+ +++++++|+++||..|+..|++
T Consensus 148 ~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~-~~~~~--~~----~~~~~~~~~~l-~~~l~~~dil~~n~~E~~~l~g 219 (332)
T PLN02548 148 KAKFYYIAGFFLTVSPESIMLVAEHAAANNKT-FMMNL--SA----PFICEFFKDQL-MEALPYVDFLFGNETEARTFAK 219 (332)
T ss_pred hCCEEEEEEEEccCCHHHHHHHHHHHHHcCCE-EEEEC--CC----hhHHHHhHHHH-HHHHhhCCEEEecHHHHHHHhC
Confidence 46666654 2 23567778888888877654 66664 10 11111111233 4678899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHh----c--CCCeEEEecccCCCCCCceEEEEeCCeEEEEeec---ccCCCCCCCCcchHHHH
Q 010244 166 GMQVVTVADMCSAAKLLHN----L--GPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSS---RVNTRNTHGTGCTLASC 236 (514)
Q Consensus 166 ~~~~~~~~~~~~~a~~l~~----~--g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~GaGD~f~a~ 236 (514)
....+.++..++++++.+ . +++.|++|.|..| ++++.+++.++++.. ..+++||+||||+|.|+
T Consensus 220 -~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G------~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag 292 (332)
T PLN02548 220 -VQGWETEDVEEIALKISALPKASGTHKRTVVITQGADP------TVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGG 292 (332)
T ss_pred -ccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCc------EEEEECCeEEEeccccCCcCccccCCCchHHHHHH
Confidence 322222333444444432 2 5789999999987 777777776666643 34578999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhc
Q 010244 237 IAAELAKGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 237 i~~~l~~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
|+++|++|+++++|+++|++++..++++
T Consensus 293 ~l~~l~~g~~l~eal~~a~aaAa~~v~~ 320 (332)
T PLN02548 293 FLSQLVQGKDIEECVRAGNYAANVIIQR 320 (332)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998888775
No 101
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.58 E-value=7.5e-14 Score=142.06 Aligned_cols=158 Identities=18% Similarity=0.116 Sum_probs=118.3
Q ss_pred CcCEEEEccc-CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhc--ccceEEcCCHHHHHHhhC
Q 010244 89 QVDVVKTGML-PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLL--PMADIVTPNVKEASALLG 165 (514)
Q Consensus 89 ~~~~i~~G~~-~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll--~~~diitpN~~E~~~L~g 165 (514)
+++.+.+.+. .+.+.+..+++.+++.+.+ +++|+.-. ..+ ....+.+. .++ .++|++++|+.|+..|++
T Consensus 177 ~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~-v~lD~s~~-----~~v-~~~r~~l~-~ll~~~~vDilf~Ne~Ea~~l~~ 248 (367)
T PLN02379 177 GSKWLVLRYGFYNLEVIEAAIRLAKQEGLS-VSLDLASF-----EMV-RNFRSPLL-QLLESGKIDLCFANEDEARELLR 248 (367)
T ss_pred cCCEEEEEcccCCHHHHHHHHHHHHHcCCE-EEEeccch-----hhh-hhhhHHHH-HHhhcCCccEEEcCHHHHHHHhc
Confidence 4777777753 3577888899999888876 99997210 011 11112333 344 479999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecc-cCCCCCCCCcchHHHHHHHHHHcC
Q 010244 166 GMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSR-VNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 166 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
.....+ ..++. ++.+.+++.|++|.|.+| ++++.+++.+.++..+ .+++||+||||+|+|+|+++|.+|
T Consensus 249 ~~~~~~---~~~~~-~~l~~~~~~vvvT~G~~G------a~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G 318 (367)
T PLN02379 249 GEQESD---PEAAL-EFLAKYCNWAVVTLGSKG------CIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKG 318 (367)
T ss_pred CCCCCC---HHHHH-HHHHhcCCEEEEEECCCC------eEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCC
Confidence 221122 23333 344557899999999988 7888888777888775 468899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|+.++..++++
T Consensus 319 ~~l~~a~~~g~~aAa~vi~~ 338 (367)
T PLN02379 319 LSLEECCKVGACSGGSVVRA 338 (367)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999888876
No 102
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.57 E-value=4e-14 Score=131.45 Aligned_cols=137 Identities=32% Similarity=0.380 Sum_probs=105.9
Q ss_pred cCEEEEcccCCH-HHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 90 VDVVKTGMLPST-DLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 90 ~~~i~~G~~~~~-~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
++++.++...+. +....+++.+++.+.+ +++||+..... ... ..+ .++++++|+++||..|++.|++ ..
T Consensus 58 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~-v~~D~~~~~~~----~~~---~~~-~~~~~~~dvl~~n~~E~~~l~~-~~ 127 (196)
T cd00287 58 ADAVVISGLSPAPEAVLDALEEARRRGVP-VVLDPGPRAVR----LDG---EEL-EKLLPGVDILTPNEEEAEALTG-RR 127 (196)
T ss_pred ccEEEEecccCcHHHHHHHHHHHHHcCCe-EEEeCCccccc----ccc---chH-HHHHhhCCEECCCHHHHHHHhC-CC
Confidence 678888776554 6677788888877765 99999654211 110 112 3678899999999999999998 54
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEe-CCeEEEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD-GEDFHELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
..+.++..++++.+.+++++.|++|.|..| +++++ +++.++++..+.+.+|++|+||+|+|+|++.+.
T Consensus 128 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g------~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 128 DLEVKEAAEAAALLLSKGPKVVIVTLGEKG------AIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CCChHHHHHHHHHHHhcCCCEEEEEECCCc------cEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 445566778888999999999999999877 67777 666777777777788999999999999999863
No 103
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.57 E-value=8.7e-14 Score=133.71 Aligned_cols=173 Identities=24% Similarity=0.310 Sum_probs=136.0
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCC---
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDM--- 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~--- 389 (514)
+..+.++.+.+.|++.+|+|+++...++.......++++|+.++++++++ ++++.+.++||++||+++...
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~ 112 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENP 112 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhCh
Confidence 45678888999999999999999877666677788889999999999995 357788999999999998654
Q ss_pred -CHHHHHhhcCCC-cEEEEecC---------------CHH-HHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHH
Q 010244 390 -PARTARALLGPD-KIIGVSCK---------------TPE-EAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVC 451 (514)
Q Consensus 390 -~~~~~~~~~~~~-~~ig~s~~---------------~~~-e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~ 451 (514)
...++.+.++.. .+++.+++ ++. .++.+.+.|++.+++..+-...+ ....+++.+++++
T Consensus 113 ~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~---~~g~~~~~i~~i~ 189 (241)
T PRK13585 113 EIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL---LEGVNTEPVKELV 189 (241)
T ss_pred HHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC---cCCCCHHHHHHHH
Confidence 234455555443 34677764 444 46777789999997766533222 2345789999999
Q ss_pred HcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHH
Q 010244 452 LASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILP 497 (514)
Q Consensus 452 ~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~ 497 (514)
+..++||++.|||+ ++++.+++++|++ ||+++++++......+
T Consensus 190 ~~~~iPvia~GGI~~~~di~~~~~~Ga~---gv~vgsa~~~~~~~~~ 233 (241)
T PRK13585 190 DSVDIPVIASGGVTTLDDLRALKEAGAA---GVVVGSALYKGKFTLE 233 (241)
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHcCCC---EEEEEHHHhcCCcCHH
Confidence 98899999999998 8999999999999 9999999997654433
No 104
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=99.56 E-value=1e-13 Score=131.00 Aligned_cols=174 Identities=21% Similarity=0.190 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
.+..+..++..++|++++++-.-........+..+.+++. .++++++.+ +++.+.++|+|+||++..+++.
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~ 107 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDD 107 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCH
Confidence 4678888899999999998843222111112233333332 256776544 5788999999999999888775
Q ss_pred HHHHhh----cCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC
Q 010244 392 RTARAL----LGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG 465 (514)
Q Consensus 392 ~~~~~~----~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~ 465 (514)
...+.. ...+..+.+.+|+.+|+.++.+.|+||+++++...+.. ..+++.++++++.+ ++|++|.|||+
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~pvia~gGI~ 182 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVILVSESGIS 182 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCEEEEEcCCC
Confidence 433332 22455555668999999999999999999986544322 24568888888774 68999999996
Q ss_pred -cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHH
Q 010244 466 -ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKL 502 (514)
Q Consensus 466 -~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~ 502 (514)
++|+.+++++|++ ||++||+|++..+|.+.+++|
T Consensus 183 s~edi~~~~~~Ga~---gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 183 TPEDVKRLAEAGAD---AVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred CHHHHHHHHHcCCC---EEEECHHHcCCCCHHHHHHhC
Confidence 5999999999999 999999999999998887653
No 105
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.56 E-value=5.1e-14 Score=136.55 Aligned_cols=147 Identities=16% Similarity=0.248 Sum_probs=110.7
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.++.. +.+....+.+.+ . ++++||..... .+.. .+.+.+++++++|+++||..|+..+.
T Consensus 107 ~~~~~~~~~~-~~~~~~~~~~~~----~-~v~~D~~~~~~----~~~~--~~~~~~~~l~~~di~~~n~~E~~~~~---- 170 (254)
T cd01937 107 TAEIVILGPV-PEEISPSLFRKF----A-FISLDAQGFLR----RANQ--EKLIKCVILKLHDVLKLSRVEAEVIS---- 170 (254)
T ss_pred cccEEEECCC-cchhcHHHHhhh----h-heeEcccccee----eccc--cchHHHhhcccCcEEEEcHHHHhhcC----
Confidence 5788888765 344444443322 3 49999853210 0111 12223578999999999999999731
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
+..++++.+.++|++.|++|.|..| .+++++++.++++..+.+.+|++||||+|+|+|++.|.+|++++
T Consensus 171 -----~~~~~~~~l~~~g~~~vvvt~g~~g------~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~ 239 (254)
T cd01937 171 -----TPTELARLIKETGVKEIIVTDGEEG------GYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKDIK 239 (254)
T ss_pred -----CHHHHHHHHHHcCCCEEEEeeCCcc------eEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHcCCCHH
Confidence 2345677788889999999999977 77777777777787777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 010244 249 SAVKVAKCFVETAL 262 (514)
Q Consensus 249 ~A~~~A~~~~~~~i 262 (514)
+|+++|+.++..++
T Consensus 240 ~a~~~a~~~aa~~i 253 (254)
T cd01937 240 EAAEFAAAAAAKFI 253 (254)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999977665
No 106
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.55 E-value=1.5e-13 Score=138.18 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=114.0
Q ss_pred CcCEEEEcccCCH--HHHHHHHHHHhc------CCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHH
Q 010244 89 QVDVVKTGMLPST--DLVKVLLQSLSE------FPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEA 160 (514)
Q Consensus 89 ~~~~i~~G~~~~~--~~~~~~~~~~~~------~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~ 160 (514)
.++.+.++..... +....+.+.+++ .+.. +++||... ...+...+.+ ..+++++|+++||..|+
T Consensus 120 ~a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~-~~~d~~~~------~~~~~~~~~l-~~~l~~~dil~~n~~Ea 191 (328)
T cd01943 120 RSSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPK-IVWEPLPD------SCDPENLEDL-LQALPRVDVFSPNLEEA 191 (328)
T ss_pred CCCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccE-EEEecCCc------ccChhhHHHH-HHHhccCCEECCCHHHH
Confidence 4667777554333 667777788877 4443 77897311 1111112334 47899999999999999
Q ss_pred HHhhCCCCCCCH---HHHHH-----HHHHHHhcCCCeEEEecccCCCCCCceEEEEe--CCeEEEEeeccc---CCCCCC
Q 010244 161 SALLGGMQVVTV---ADMCS-----AAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD--GEDFHELRSSRV---NTRNTH 227 (514)
Q Consensus 161 ~~L~g~~~~~~~---~~~~~-----~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~--~~~~~~~~~~~~---~~~d~~ 227 (514)
..|+| ....+. ++... ....+...+.+.|++|.|.+| +++++ +++.++++..++ +++||+
T Consensus 192 ~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~G------a~~~~~~~~~~~~~p~~~v~~~~vvDtt 264 (328)
T cd01943 192 ARLLG-LPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLG------CYVGSADSGPELWLPAYHTKSTKVVDPT 264 (328)
T ss_pred HHHhC-CCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCC------CEEEecCCCceEecCCccCCCCcccCCC
Confidence 99998 322211 11111 111224568899999999988 67776 445667777776 789999
Q ss_pred CCcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Q 010244 228 GTGCTLASCIAAELAKGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 228 GaGD~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
||||+|.|+|++.|.+|+++++|+++|++++..++++
T Consensus 265 GAGDaF~agfl~~l~~g~~~~~al~~a~a~Aa~~v~~ 301 (328)
T cd01943 265 GGGNSFLGGFAAGLALTKSIDEACIYGSVAASFAIEQ 301 (328)
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999997777765
No 107
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=99.55 E-value=3.8e-13 Score=125.76 Aligned_cols=186 Identities=17% Similarity=0.095 Sum_probs=130.1
Q ss_pred eEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE----cC----cHHHH
Q 010244 303 FLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI----ND----RIDIA 374 (514)
Q Consensus 303 ~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v----~~----~~~~a 374 (514)
++++.-|-.. .++..+.++++.++ ++++++-..-.. ..-.+.++.+++.. .+.++.. ++ ..+.+
T Consensus 2 ~~~~a~d~~~----~~~~~~~~~~l~~~-i~~ieig~~~~~-~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~ 73 (202)
T cd04726 2 LLQVALDLLD----LEEALELAKKVPDG-VDIIEAGTPLIK-SEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMA 73 (202)
T ss_pred ceEEEEcCCC----HHHHHHHHHHhhhc-CCEEEcCCHHHH-HhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHH
Confidence 4445445432 25678888888888 999998321100 00023333343321 1444443 32 24678
Q ss_pred HhCCCCeEEeCCCCCC---HHHHHhhcCCCcEEE---EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHH
Q 010244 375 LACDADGVHLGQSDMP---ARTARALLGPDKIIG---VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLK 448 (514)
Q Consensus 375 ~~~ga~gvhl~~~~~~---~~~~~~~~~~~~~ig---~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~ 448 (514)
.++|++++.++....+ ....+.....+..++ .+++|++|+.++...|+||+.++|.|.+.++. ...+.+.++
T Consensus 74 ~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~--~~~~~~~i~ 151 (202)
T cd04726 74 FKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAG--GWWPEDDLK 151 (202)
T ss_pred HhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccC--CCCCHHHHH
Confidence 8999999977654322 223343444567777 47789999999999999999998887766553 235788888
Q ss_pred HHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHH
Q 010244 449 TVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKK 501 (514)
Q Consensus 449 ~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~ 501 (514)
++++..++|+++.|||+++|+.+++++|++ ++++||+|++++||.+.+++
T Consensus 152 ~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad---~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 152 KVKKLLGVKVAVAGGITPDTLPEFKKAGAD---IVIVGRAITGAADPAEAARE 201 (202)
T ss_pred HHHhhcCCCEEEECCcCHHHHHHHHhcCCC---EEEEeehhcCCCCHHHHHhc
Confidence 888767899999999999999999999999 99999999999999887764
No 108
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.54 E-value=2.3e-13 Score=133.82 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=107.8
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHH---HhhC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEAS---ALLG 165 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~---~L~g 165 (514)
+.+.+.+.... ....+++.+++.+.+ +++||.... ..+.. +.+ +.+++++|+++||..|+. .+++
T Consensus 126 ~~~~~~~~~~~---~~~~~~~~~~~~g~~-v~~D~~~~~----~~~~~---~~~-~~~l~~~dil~~n~~E~~~l~~~~~ 193 (279)
T cd01942 126 LADIVHLSSGP---GLIELARELAAGGIT-VSFDPGQEL----PRLSG---EEL-EEILERADILFVNDYEAELLKERTG 193 (279)
T ss_pred ccCEEEeCCch---HHHHHHHHHHHcCCe-EEEcchhhh----hhccH---HHH-HHHHhhCCEEecCHHHHHHHHhhcC
Confidence 56777776542 345555666665654 999985321 11111 223 367789999999999994 4554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeec-ccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 166 GMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSS-RVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 166 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
.. +.. ..++.+.|++|.|..| .+++.+++.++++.. +++++||+|+||+|+|+|++.|.+|
T Consensus 194 -~~-----~~~------~~~~~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g 255 (279)
T cd01942 194 -LS-----EAE------LASGVRVVVVTLGPKG------AIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRG 255 (279)
T ss_pred -CC-----hHH------HhcCCCEEEEEECCCc------eEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcC
Confidence 11 111 1278899999999988 778877777778775 7788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
.++++|+++|++++..++++
T Consensus 256 ~~l~~al~~a~~~Aa~~~~~ 275 (279)
T cd01942 256 YDLEESLRLGNLAASLKVER 275 (279)
T ss_pred CCHHHHHHHHHHHHHHHHcc
Confidence 99999999999998877765
No 109
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.54 E-value=1.1e-13 Score=142.32 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=114.1
Q ss_pred CcCEEEE-ccc-------CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHH
Q 010244 89 QVDVVKT-GML-------PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEA 160 (514)
Q Consensus 89 ~~~~i~~-G~~-------~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~ 160 (514)
+++.+.+ |+. ...+.+..+++.+++.+.+ +++||+... .+... .+.+.+.+++++|+|++|+.|+
T Consensus 186 ~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~-VslD~s~~~-----~v~~~-~~~~~e~l~~~vDILf~NeeEa 258 (434)
T PRK15074 186 GASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVP-VVLTLGTKF-----VIEDN-PQWWQEFLKEHVSILAMNEDEA 258 (434)
T ss_pred cCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCE-EEEECcchh-----hcccc-HHHHHHHHHhcCCEEEcCHHHH
Confidence 4666665 543 2356778888888888876 999985331 11110 1233345567999999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEe--CC-----eE--------------------
Q 010244 161 SALLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFD--GE-----DF-------------------- 213 (514)
Q Consensus 161 ~~L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~--~~-----~~-------------------- 213 (514)
..|+| . ++..++++.+.+ +++.|+||.|.+| ++++. .+ ..
T Consensus 259 ~~LtG-~-----~d~eea~~~L~~-~~~~VVVTlG~~G------a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15074 259 EALTG-E-----SDPLLASDKALD-WVDLVLCTAGPIG------LYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAM 325 (434)
T ss_pred HHHhC-C-----CCHHHHHHHHHc-CCCEEEEEECCCC------EEEEecccccccCceeeeccccccccccchhcccch
Confidence 99997 2 233455666664 4789999999988 66653 11 11
Q ss_pred ------------EEEeec---ccCCCCCCCCcchHHHHHHHHHHcCC--------------------CHHHHHHHHHHHH
Q 010244 214 ------------HELRSS---RVNTRNTHGTGCTLASCIAAELAKGS--------------------PMLSAVKVAKCFV 258 (514)
Q Consensus 214 ------------~~~~~~---~~~~~d~~GaGD~f~a~i~~~l~~g~--------------------~l~~A~~~A~~~~ 258 (514)
+++++. +++++||+||||+|+|+|++.|.+|+ ++.+|+++|+.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a 405 (434)
T PRK15074 326 RKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVS 405 (434)
T ss_pred hccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccccccccCCHHHHHHHHHHHH
Confidence 145555 56788999999999999999999998 8999999999999
Q ss_pred HHHHhcc
Q 010244 259 ETALDYS 265 (514)
Q Consensus 259 ~~~i~~~ 265 (514)
+.++++.
T Consensus 406 ~~vi~~~ 412 (434)
T PRK15074 406 YEVLNQH 412 (434)
T ss_pred HHHHhhc
Confidence 9998864
No 110
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=99.54 E-value=1e-13 Score=134.59 Aligned_cols=141 Identities=18% Similarity=0.290 Sum_probs=119.8
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.++.++++|.+.|++|.++.+.++.++..+++.++|+.+|+. ++.++|..| ++.+
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~--------Ve~ElG~~g---g~ed------------ 143 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS--------VEAELGTLG---GIED------------ 143 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE--------EEEeeCCCc---Cccc------------
Confidence 46788999999999999999999999999999999999999873 333445433 2222
Q ss_pred CcEEE--EecCCHHHHHHhhh-CCCcEEE--eccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEEC--CCCcccHHHHH
Q 010244 401 DKIIG--VSCKTPEEAHQAWI-DGANYIG--CGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIG--GIGISNASDVM 473 (514)
Q Consensus 401 ~~~ig--~s~~~~~e~~~a~~-~g~d~v~--~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~G--Gi~~~~~~~~~ 473 (514)
.++| .++|+++|+.++.+ .|+||+. +|+++.+.++ .+.++++.|+++++.+++|+++.| ||+.+|+.+++
T Consensus 144 -~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~--~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i 220 (282)
T TIGR01859 144 -GVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKG--EPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAI 220 (282)
T ss_pred -cccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCC--CCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 1334 67999999999996 8999999 7898887765 366899999999999999999999 99999999999
Q ss_pred HCCCCCCceEEEeeccc
Q 010244 474 KIGVSNLKGVAVVSALF 490 (514)
Q Consensus 474 ~~Ga~~~~gva~~~~i~ 490 (514)
++|+. +|.+.+.+.
T Consensus 221 ~~Gi~---kiNv~T~l~ 234 (282)
T TIGR01859 221 KLGIA---KINIDTDCR 234 (282)
T ss_pred HcCCC---EEEECcHHH
Confidence 99999 999999885
No 111
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.53 E-value=4.6e-13 Score=139.55 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=111.0
Q ss_pred CcCEEEEcccC---C--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCC-ChhHHHHHHHhhcccceEEcCCHHHHHH
Q 010244 89 QVDVVKTGMLP---S--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLA-GPSTITGLRENLLPMADIVTPNVKEASA 162 (514)
Q Consensus 89 ~~~~i~~G~~~---~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~-~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (514)
+++.+.++... + .+....+++.+++.+.. +++||+++. .++ +.+........+++++|||++|..|++.
T Consensus 266 ~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~-VsfDpN~R~----~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~ 340 (496)
T PLN02543 266 EARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGL-IFFDLNLPL----PLWRSRDETRELIKKAWNEADIIEVSRQELEF 340 (496)
T ss_pred CCceEEECChhhcCchHHHHHHHHHHHHHHCCCE-EEEeCCCCc----cccCCHHHHHHHHHHHHHhCCEEEecHHHHHH
Confidence 46777776542 1 35667777888887776 999998773 233 2222333344788999999999999999
Q ss_pred hhCCCCC-----CCHH------------------HHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEee-
Q 010244 163 LLGGMQV-----VTVA------------------DMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRS- 218 (514)
Q Consensus 163 L~g~~~~-----~~~~------------------~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~- 218 (514)
|+|.... .+.+ +. +.+..+.+.+.+.|+||.|.+| ++++.++....++.
T Consensus 341 Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~VVVT~G~~G------a~~~t~~~~g~v~~~ 413 (496)
T PLN02543 341 LLDEDYYERKRNYPPQYYAESFEQTKNWRDYYHYTP-EEIAPLWHDGLKLLLVTDGTLR------IHYYTPKFDGVVVGT 413 (496)
T ss_pred HhCCCcccccccccchhhhhhhhhhhcccccccCCH-HHHHHHHHCCCCEEEEEcCCCc------EEEEECCCccccccc
Confidence 9973200 0000 11 2245666778999999999988 67766431111110
Q ss_pred --c--ccCCCCCCCCcchHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHh
Q 010244 219 --S--RVNTRNTHGTGCTLASCIAAELAK-------GSPMLSAVKVAKCFVETALD 263 (514)
Q Consensus 219 --~--~~~~~d~~GaGD~f~a~i~~~l~~-------g~~l~~A~~~A~~~~~~~i~ 263 (514)
. +...+|||||||+|.|+|++.|.+ +.++++|+++|++++..++.
T Consensus 414 ~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt 469 (496)
T PLN02543 414 EDVLITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQW 469 (496)
T ss_pred ccccCCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHc
Confidence 1 111479999999999999999985 78999999999999555544
No 112
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=99.51 E-value=4.3e-13 Score=130.36 Aligned_cols=152 Identities=22% Similarity=0.304 Sum_probs=120.2
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCC--HHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 319 SITDAVKAALEGGATIIQLREKDAD--TRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
.....++++++.|++.+++|.+..+ ..+..+.++++.+.|+++|+++++..+ ++|+|+.... ....
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~--------~~g~~~e~~~-~~~~--- 161 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMY--------PRGPGIKNEY-DPEV--- 161 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEe--------cCCCccCCCc-cHHH---
Confidence 3445688899999999999987544 667788889999999999999988652 5688885321 1100
Q ss_pred hcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCccc-------H
Q 010244 397 LLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISN-------A 469 (514)
Q Consensus 397 ~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~-------~ 469 (514)
..+.++.+.+.|+|||=.+ |+ .+++.++++.+..++||+++|||+.+| +
T Consensus 162 -------------i~~a~~~a~e~GAD~vKt~--~~---------~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v 217 (267)
T PRK07226 162 -------------VAHAARVAAELGADIVKTN--YT---------GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMV 217 (267)
T ss_pred -------------HHHHHHHHHHHCCCEEeeC--CC---------CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHH
Confidence 0122577788999999333 11 257899999887799999999999876 7
Q ss_pred HHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
.+++++||+ |+++++++|+.+||.+.+++|+..+++.
T Consensus 218 ~~~~~aGA~---Gis~gr~i~~~~~p~~~~~~l~~~v~~~ 254 (267)
T PRK07226 218 RDAMEAGAA---GVAVGRNVFQHEDPEAITRAISAVVHEG 254 (267)
T ss_pred HHHHHcCCc---EEehhhhhhcCCCHHHHHHHHHHHHhCC
Confidence 788899999 9999999999999999999999998763
No 113
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.50 E-value=3.6e-13 Score=131.41 Aligned_cols=141 Identities=17% Similarity=0.211 Sum_probs=108.8
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+.+.+.++.... ...+.+.+++.+ . +++||.... . ...+ +++++.+|++++|..|+..+++
T Consensus 121 ~~~~~~~~~~~~---~~~~~~~a~~~~-~-~~~d~~~~~-------~---~~~~-~~~~~~~d~~~~n~~e~~~l~~--- 181 (265)
T cd01947 121 EGDGVFITAAAV---DKEAIRKCRETK-L-VILQVTPRV-------R---VDEL-NQALIPLDILIGSRLDPGELVV--- 181 (265)
T ss_pred cCCEEEEecccc---cHHHHHHHHHhC-C-eEeccCccc-------c---chhH-HHHhhhCCEEEeCHHHHHHhhh---
Confidence 467777766432 234455666553 3 788863221 0 1223 3678899999999999998763
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
++.+.+.+.+.|++|.|.+| .+++++++.++++..+++++|++||||+|.|+|++.+.+|++++
T Consensus 182 ----------~~~~~~~~~~~viit~G~~G------a~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~ 245 (265)
T cd01947 182 ----------AEKIAGPFPRYLIVTEGELG------AILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWSIE 245 (265)
T ss_pred ----------HHHHHhccCCEEEEEeCCCC------eEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHH
Confidence 44566788999999999988 77887777777888788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010244 249 SAVKVAKCFVETALDY 264 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~ 264 (514)
+|+++|++++..+++.
T Consensus 246 ~al~~a~~~Aa~~v~~ 261 (265)
T cd01947 246 EALELGAQCGAICVSH 261 (265)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999997777664
No 114
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.49 E-value=1.9e-12 Score=125.95 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=110.5
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.+.++.... ...+++.+++.+.+ +++||.... . ..+.+.+++++|++.+|..+
T Consensus 113 ~~~~v~~~~~~~---~~~~~~~~~~~~~~-v~~D~~~~~-------~----~~~~~~~~~~~d~~~~~~~~--------- 168 (260)
T PRK09813 113 QYDIVHAAIWGH---AEDAFPQLHAAGKL-TAFDFSDKW-------D----SPLWQTLVPHLDYAFASAPQ--------- 168 (260)
T ss_pred hCCEEEEeccch---HHHHHHHHHHcCCe-EEEEcCCCc-------c----HHHHHHhCCceeEEEecCCc---------
Confidence 467777764322 34566667777665 999984321 1 12234678999999887542
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcCCCHH
Q 010244 169 VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKGSPML 248 (514)
Q Consensus 169 ~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g~~l~ 248 (514)
...+..++++.+.+.|++.|++|.|.+| .+++++++.++++..+++++||+||||+|+|+|++.+.+|++++
T Consensus 169 --~~~~~~~~~~~~~~~g~~~viit~G~~G------a~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~~~ 240 (260)
T PRK09813 169 --EDEFLRLKMKAIVARGAGVVIVTLGENG------SIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMTLP 240 (260)
T ss_pred --chHHHHHHHHHHHHcCCCEEEEEECCCc------eEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCCHH
Confidence 1234567778888889999999999988 77777777788888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010244 249 SAVKVAKCFVETALDY 264 (514)
Q Consensus 249 ~A~~~A~~~~~~~i~~ 264 (514)
+|+++|+.++..+++.
T Consensus 241 ~al~~a~~~aa~~~~~ 256 (260)
T PRK09813 241 QAMAQGTACAAKTIQY 256 (260)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999997777664
No 115
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=99.47 E-value=3.9e-12 Score=119.27 Aligned_cols=177 Identities=20% Similarity=0.164 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhc-CceEE----EcC----cHHHHHhCCCCeEEeCCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVH-GVPLL----IND----RIDIALACDADGVHLGQSD 388 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~----v~~----~~~~a~~~ga~gvhl~~~~ 388 (514)
++..+.++.+ +.|++++++...- ....-.+.++.+ .+.+ +..+. +.+ ..+.+.++|||.+-+....
T Consensus 12 ~~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l---~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 12 EEALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEM---KEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred HHHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHH---HHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC
Confidence 5677788777 9999999994211 111112333333 3333 22333 222 3677889999987433332
Q ss_pred CC---HHHHHhhcCCCcEEEEecCC----HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-CCEEE
Q 010244 389 MP---ARTARALLGPDKIIGVSCKT----PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-LPVVA 460 (514)
Q Consensus 389 ~~---~~~~~~~~~~~~~ig~s~~~----~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-~pv~a 460 (514)
.. ...++.....+..+++.+++ .++++.+.+.|+||+.+.|-|..++. .+..++.++++++.++ .++.+
T Consensus 87 ~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~---~~~~~~~i~~l~~~~~~~~i~v 163 (206)
T TIGR03128 87 DDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAK---GQNPFEDLQTILKLVKEARVAV 163 (206)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccC---CCCCHHHHHHHHHhcCCCcEEE
Confidence 21 22333344457777766543 37888899999999977665554433 3346788888888764 56777
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHH
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAV 505 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~ 505 (514)
.|||+++|+.+++++|++ ++++||+||+++||.+.+++|++.
T Consensus 164 ~GGI~~~n~~~~~~~Ga~---~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 164 AGGINLDTIPDVIKLGPD---IVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred ECCcCHHHHHHHHHcCCC---EEEEeehhcCCCCHHHHHHHHHhh
Confidence 999999999999999999 999999999999999999998865
No 116
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=99.45 E-value=1.5e-12 Score=122.00 Aligned_cols=187 Identities=19% Similarity=0.179 Sum_probs=138.6
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHH-H-hhcCceEEEcC---cHHHHHhCCCCeE--EeCCC
Q 010244 319 SITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQI-C-CVHGVPLLIND---RIDIALACDADGV--HLGQS 387 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~-~-~~~~~~l~v~~---~~~~a~~~ga~gv--hl~~~ 387 (514)
.+.+.++++.+.|++++++---+..- .-=.+.++.+++. + ..++++|++.+ +++...++|++-+ |....
T Consensus 13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~ 92 (220)
T PRK08883 13 RLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEAS 92 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCc
Confidence 56677888888999999995543221 1112344555554 2 34678899865 4456678899965 66544
Q ss_pred CCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEE
Q 010244 388 DMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVA 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a 460 (514)
......++..+..+...|++.. |+.+...-.-.-+|+|.+..+.|...-+..-+.+++.++++++.. ++|+.+
T Consensus 93 ~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v 172 (220)
T PRK08883 93 EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI 172 (220)
T ss_pred ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE
Confidence 4334455555566777777664 666655544455999999999997766556667888999888765 389999
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.|||+++|+..+.++||+ ++++||+||+++|+.+.++++++.+++
T Consensus 173 dGGI~~eni~~l~~aGAd---~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 173 DGGVKVDNIREIAEAGAD---MFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred ECCCCHHHHHHHHHcCCC---EEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999999999988765
No 117
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.43 E-value=7.2e-12 Score=123.96 Aligned_cols=151 Identities=14% Similarity=0.089 Sum_probs=106.1
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCC------CcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHH
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPV------RALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASA 162 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~------~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (514)
+++.+.++... ++....+++.+++.+. .++++||... .+.+. .+++++|++++|..|++.
T Consensus 127 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~------------~~~~~-~~l~~~di~~~n~~~~~~ 192 (290)
T cd01939 127 QYGWIHFEGRN-PDETLRMMQHIEEHNNRRPEIRITISVEVEKP------------REELL-ELAAYCDVVFVSKDWAQS 192 (290)
T ss_pred cCCEEEEeccC-HHHHHHHHHHHHHhcCcCCCcceEEEEEeccC------------chhhh-hHHhhCCEEEEEhHHHHh
Confidence 57888876543 3344556666666542 2477886321 12233 678899999999999886
Q ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeC-CeEEEEeeccc-CCCCCCCCcchHHHHHHHH
Q 010244 163 LLGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDG-EDFHELRSSRV-NTRNTHGTGCTLASCIAAE 240 (514)
Q Consensus 163 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~-~~~~~~~~~~~-~~~d~~GaGD~f~a~i~~~ 240 (514)
+ + . .+.++... ...+...+++.|++|.|.+| .+++.+ ++.++++..+. +++||+||||+|.|+|++.
T Consensus 193 ~-~-~--~~~~~~~~-~~~~~~~~~~~vvvt~G~~G------~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~ 261 (290)
T cd01939 193 R-G-Y--KSPEECLR-GEGPRAKKAALLVCTWGDQG------AGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYA 261 (290)
T ss_pred c-C-c--CCHHHHHH-hhhhhccCCcEEEEEcccCC------eEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHH
Confidence 4 5 2 22333221 12223457889999999988 666664 44566776653 5889999999999999999
Q ss_pred HHcCCC-HHHHHHHHHHHHHHHHhc
Q 010244 241 LAKGSP-MLSAVKVAKCFVETALDY 264 (514)
Q Consensus 241 l~~g~~-l~~A~~~A~~~~~~~i~~ 264 (514)
+.+|++ +++|+++|++++...++.
T Consensus 262 l~~g~~~~~~a~~~a~a~aa~~i~~ 286 (290)
T cd01939 262 LNKGPDDLSEALDFGNRVASQKCTG 286 (290)
T ss_pred HHcCCccHHHHHHHHHHHHHHHHhh
Confidence 999995 999999999997777664
No 118
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=99.43 E-value=3.6e-12 Score=122.99 Aligned_cols=172 Identities=20% Similarity=0.165 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHhCCCCEEEE-EcCC---CCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCC
Q 010244 318 RSITDAVKAALEGGATIIQL-REKD---ADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~l-r~~~---~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~ 387 (514)
.+..+......++|++.+-+ +++. .+.+. +..+.+..+++++..| .++.+.++|||+||+...
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~-------l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~ 142 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEY-------LRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVA 142 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHH-------HHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEec
Confidence 35677888888899988766 2222 23222 2222333466776544 366788999999999988
Q ss_pred CCCHHHHHh----hcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEE
Q 010244 388 DMPARTARA----LLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAI 461 (514)
Q Consensus 388 ~~~~~~~~~----~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~ 461 (514)
.++...++. ....+..+.+.+||.+|+.+|.+.|+|||++++.--. .....++...++.+.+ ..|+++.
T Consensus 143 ~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~-----~~~~d~~~~~~l~~~~p~~~~vIae 217 (260)
T PRK00278 143 ALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLK-----TFEVDLETTERLAPLIPSDRLVVSE 217 (260)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcc-----cccCCHHHHHHHHHhCCCCCEEEEE
Confidence 765433333 3334667777799999999999999999998751110 0112466777777765 3699999
Q ss_pred CCC-CcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHH
Q 010244 462 GGI-GISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHA 504 (514)
Q Consensus 462 GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~ 504 (514)
||| +++++..++++|++ +|.+|++|++++||.+.+++|..
T Consensus 218 gGI~t~ed~~~~~~~Gad---~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 218 SGIFTPEDLKRLAKAGAD---AVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred eCCCCHHHHHHHHHcCCC---EEEECHHHcCCCCHHHHHHHHhc
Confidence 999 59999999999999 99999999999999999988753
No 119
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.42 E-value=6.8e-12 Score=120.25 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=122.3
Q ss_pred HHHHHHHhCC-CCEEEEEcCCCCHHHHHHHHHHHHHHH-hhcCceEEEcC-------cHHHHHhCCCCeEEeCCCCCCHH
Q 010244 322 DAVKAALEGG-ATIIQLREKDADTRGFLEAAKACLQIC-CVHGVPLLIND-------RIDIALACDADGVHLGQSDMPAR 392 (514)
Q Consensus 322 ~~~~~~~~~G-v~~v~lr~~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~~-------~~~~a~~~ga~gvhl~~~~~~~~ 392 (514)
+.+..+.+.| +.++..| ..+.+++.+.++++++.+ ..+++.+++++ .++.+.++|+++||++.. .+..
T Consensus 17 ~~~~~~~~~G~ig~i~~~--~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~-~~~~ 93 (236)
T cd04730 17 ELAAAVSNAGGLGFIGAG--YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG-PPAE 93 (236)
T ss_pred HHHHHHHhCCCccccCCC--CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC-CCHH
Confidence 3455555565 3554222 235667777777777655 34567788876 478888999999999877 3444
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCC-ccCCHHHHHHHHHcCCCCEEEECCCCc-ccHH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANN-LTVGLDGLKTVCLASKLPVVAIGGIGI-SNAS 470 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~-~~~g~~~l~~~~~~~~~pv~a~GGi~~-~~~~ 470 (514)
..+.....+..++.++++.+++..+.+.|+||+.+.+...+ .+... ....++.++++++.+++||++.|||+. +|+.
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~-G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~ 172 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAG-GHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIA 172 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCC-CCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 55555556788889999999999999999999987554222 22211 124578899998888999999999986 9999
Q ss_pred HHHHCCCCCCceEEEeecccCCCC
Q 010244 471 DVMKIGVSNLKGVAVVSALFDREC 494 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~~~ 494 (514)
++++.|++ ||.++|+++...+
T Consensus 173 ~~l~~Gad---gV~vgS~l~~~~e 193 (236)
T cd04730 173 AALALGAD---GVQMGTRFLATEE 193 (236)
T ss_pred HHHHcCCc---EEEEchhhhcCcc
Confidence 99999999 9999999996543
No 120
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.38 E-value=3.2e-11 Score=114.21 Aligned_cols=175 Identities=24% Similarity=0.230 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHH---------hh-cCceEEEcC---cHHHHHhCCCCeEEe
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQIC---------CV-HGVPLLIND---RIDIALACDADGVHL 384 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~---------~~-~~~~l~v~~---~~~~a~~~ga~gvhl 384 (514)
++..+.+.++.++|+..+.+. +. + .++++++.. ++ ++.++++.. +++.+.++|+|.+-+
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~~----~~-~---~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~ 94 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRAN----GV-E---DIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIAL 94 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEcC----CH-H---HHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEE
Confidence 567788888889999888873 22 2 223333211 11 122233322 467889999997765
Q ss_pred CCCC-------CCHHHHHhhcC-CCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCC
Q 010244 385 GQSD-------MPARTARALLG-PDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKL 456 (514)
Q Consensus 385 ~~~~-------~~~~~~~~~~~-~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~ 456 (514)
.... .....++.... .+..+...++|.+|+..+.+.|+||+.++....|.........+++.++++++.+++
T Consensus 95 d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~i 174 (221)
T PRK01130 95 DATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGC 174 (221)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCC
Confidence 3321 11223333444 688888999999999999999999997754333332222233468899999998899
Q ss_pred CEEEECCC-CcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHH
Q 010244 457 PVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVL 506 (514)
Q Consensus 457 pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~ 506 (514)
||++.||| +++++.+++++|++ ||.+|++|++.+++. +++++.+
T Consensus 175 Pvia~GGI~t~~~~~~~l~~Gad---gV~iGsai~~~~~~~---~~~~~~~ 219 (221)
T PRK01130 175 PVIAEGRINTPEQAKKALELGAH---AVVVGGAITRPEEIT---KWFVDAL 219 (221)
T ss_pred CEEEECCCCCHHHHHHHHHCCCC---EEEEchHhcCCHHHH---HHHHHHh
Confidence 99999999 59999999999999 999999999755444 4455544
No 121
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.36 E-value=1.3e-11 Score=123.73 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=105.8
Q ss_pred cCEEEEcccCCHHHHHHHHHHHhc-----CCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhh
Q 010244 90 VDVVKTGMLPSTDLVKVLLQSLSE-----FPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALL 164 (514)
Q Consensus 90 ~~~i~~G~~~~~~~~~~~~~~~~~-----~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~ 164 (514)
.+.+.+....+++....+++.++. .+.. +++||+... ..+++... ..+ ..+++++|+++||+.|+..+
T Consensus 123 ~~~~~l~~ei~~e~~~~~~~~a~~v~~D~~g~~-~~~Dp~~~~---~~~~~~~~-~~~-~~~L~~iDil~~ne~Ea~~l- 195 (335)
T PLN02630 123 GMAVGVAGEILPETLERMVEICDVVVVDIQALI-RVFDPVDGT---VKLVKLEE-TGF-YDMLPRIGFLKASSEEALFI- 195 (335)
T ss_pred cceeeecCCCcHHHHHHHHHHhhhheeccCceE-EecCCcccc---cccchhhH-HHH-HHHHHhCCEEEecHHHHhhc-
Confidence 455555544456777777777765 3333 788875310 01111010 112 36789999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHHHHHHHcC
Q 010244 165 GGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCIAAELAKG 244 (514)
Q Consensus 165 g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i~~~l~~g 244 (514)
. .++ + .+. ..|++|.|.+| .+++.+++.++++..+++++|++|+||+|.|+|++.+.+|
T Consensus 196 ~------~~~---~----~~~--~~vvvt~G~~G------~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g 254 (335)
T PLN02630 196 D------VEE---V----RQK--CCVIVTNGKKG------CRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQG 254 (335)
T ss_pred C------HHH---H----ccC--CEEEEEECCCc------eEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcC
Confidence 2 122 1 122 37999999988 7788877778888888888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 010244 245 SPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 245 ~~l~~A~~~A~~~~~~~i~~ 264 (514)
+++++|+++|++++..+++.
T Consensus 255 ~~~~~a~~~A~a~aa~~v~~ 274 (335)
T PLN02630 255 LAVPDAALLGNYFGSLAVEQ 274 (335)
T ss_pred CCHHHHHHHHHHHHHHHhCc
Confidence 99999999999997766664
No 122
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=8.2e-12 Score=120.64 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=106.2
Q ss_pred CcCEEEEcccCCHHHHHHHHH-----HHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHh
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQ-----SLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASAL 163 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~-----~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L 163 (514)
.+.++.+|.....+......+ .+++.+. .+..||+.+...... ..+.- ++ ...++..+|++.....|++.+
T Consensus 139 ~ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~-~i~~~pn~~l~l~~~-~~~ne-~e-~~~i~~~adv~~~s~~e~~fl 214 (330)
T KOG2855|consen 139 EAKVFHCQSEILIEEPMRSLHIAAVKVAKNAGP-AIFYDPNLRLPLWDS-LEENE-SE-IASIWNMADVIKVSSQELAFL 214 (330)
T ss_pred hccEEEEeeecCCcchhHHHHHhhhhhhhcccc-cccCCCCcccccccc-ccccH-HH-HHHHhhhhhcccccHHHHHHh
Confidence 477888888654443333333 3333332 255577655322211 11111 12 236677788888888888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeE-EEEeecccCCCCCCCCcchHHHHHHHHHH
Q 010244 164 LGGMQVVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDF-HELRSSRVNTRNTHGTGCTLASCIAAELA 242 (514)
Q Consensus 164 ~g~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~GaGD~f~a~i~~~l~ 242 (514)
+|. ...+. . +|..++.+.|+||.|.+| +.+|+.+.. ..++..+++++|||||||+|.|+|+..|.
T Consensus 215 ~~~----~~~~~---~-~L~~~~~k~viVTlG~kG------~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~ 280 (330)
T KOG2855|consen 215 TGI----EDDKI---L-KLWHMKLKLVIVTLGEKG------CRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLV 280 (330)
T ss_pred ccC----ccchH---H-HHhccCCCEEEEEeCCCc------eEEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHh
Confidence 873 11112 2 677777799999999988 888875533 47888888999999999999999999999
Q ss_pred cC--CC---HHHHHHHHHHHHHHHHh
Q 010244 243 KG--SP---MLSAVKVAKCFVETALD 263 (514)
Q Consensus 243 ~g--~~---l~~A~~~A~~~~~~~i~ 263 (514)
+| .+ +++++++|+++...+++
T Consensus 281 ~~~~~~~~~L~~~l~~A~a~~ai~v~ 306 (330)
T KOG2855|consen 281 RGSLLPELSLEEALRFANACGAITVQ 306 (330)
T ss_pred hccccchHHHHHHHHHHHHhhhHHhh
Confidence 99 66 88999999998555533
No 123
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.34 E-value=6.7e-11 Score=111.57 Aligned_cols=181 Identities=21% Similarity=0.228 Sum_probs=126.4
Q ss_pred HHHHHhCCCCEEEEEcCCCCHHHHH------HHHHHHHHHHhhcCceEEE---cC---cHHHHHhCCCCeEEeCCCCCCH
Q 010244 324 VKAALEGGATIIQLREKDADTRGFL------EAAKACLQICCVHGVPLLI---ND---RIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 324 ~~~~~~~Gv~~v~lr~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v---~~---~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
..-+-++|+..|..-++-+++-... .-.+.|+++-+..++|++= .+ .++...++|+|-|--+...-+.
T Consensus 21 a~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~rP~ 100 (283)
T cd04727 21 ARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPA 100 (283)
T ss_pred HHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCCCcH
Confidence 3345567877777644433322110 1122344444455677752 22 3556678899988432221121
Q ss_pred ----HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCC------------------------C----CCC
Q 010244 392 ----RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNT------------------------K----ANN 439 (514)
Q Consensus 392 ----~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~------------------------k----~~~ 439 (514)
..++.. .+..+.+.|.|++|+.+|.++|+|+|...-.-.|.. . ...
T Consensus 101 ~~~~~~iK~~--~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~ 178 (283)
T cd04727 101 DEEHHIDKHK--FKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKE 178 (283)
T ss_pred HHHHHHHHHH--cCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcc
Confidence 122332 378899999999999999999999998754333332 1 111
Q ss_pred ccCCHHHHHHHHHcCCCCEE--EECCC-CcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 440 LTVGLDGLKTVCLASKLPVV--AIGGI-GISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~~~pv~--a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
...+++.++++++..++||+ |+||| +++|+..++++|++ ||+++|+|+.++||.+.+++|++.+.+.
T Consensus 179 ~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAd---gVaVGSAI~~a~dP~~~tk~f~~ai~~~ 248 (283)
T cd04727 179 IQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGAD---GVFVGSGIFKSENPEKRARAIVEAVTHY 248 (283)
T ss_pred cCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCC---EEEEcHHhhcCCCHHHHHHHHHHHHHhc
Confidence 34689999999998899997 99999 99999999999999 9999999999999999999999998864
No 124
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.33 E-value=3.7e-11 Score=113.60 Aligned_cols=166 Identities=25% Similarity=0.247 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEE-------------EcC---cHHHHHhCCCCe
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLL-------------IND---RIDIALACDADG 381 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------v~~---~~~~a~~~ga~g 381 (514)
....+..+++.++|++.+.+ .+. +..+. ++.. .+++++ +.. .++.+.+.|++.
T Consensus 27 ~~i~~~a~~~~~~G~~~~~~----~~~-~~~~~---i~~~---~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~ 95 (219)
T cd04729 27 EIMAAMALAAVQGGAVGIRA----NGV-EDIRA---IRAR---VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADI 95 (219)
T ss_pred HHHHHHHHHHHHCCCeEEEc----CCH-HHHHH---HHHh---CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCE
Confidence 45778888899999988765 222 22222 2221 233433 211 567888999998
Q ss_pred EEeCCCC-------CCHHHHHhhcCC-CcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc
Q 010244 382 VHLGQSD-------MPARTARALLGP-DKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA 453 (514)
Q Consensus 382 vhl~~~~-------~~~~~~~~~~~~-~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~ 453 (514)
+-+.... .....++..... +..+.+.++|++|+..+.+.|+||+.+.+...|.........+++.++++++.
T Consensus 96 I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~ 175 (219)
T cd04729 96 IALDATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA 175 (219)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh
Confidence 8663221 111222222222 47777889999999999999999997654433332212233468999999998
Q ss_pred CCCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccCCCCHHH
Q 010244 454 SKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFDRECILP 497 (514)
Q Consensus 454 ~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~ 497 (514)
+++||++.||| +++++.+++++|++ ||.+||+|++.++|..
T Consensus 176 ~~ipvia~GGI~~~~~~~~~l~~Gad---gV~vGsal~~~~~~~~ 217 (219)
T cd04729 176 LGIPVIAEGRINSPEQAAKALELGAD---AVVVGSAITRPEHITG 217 (219)
T ss_pred cCCCEEEeCCCCCHHHHHHHHHCCCC---EEEEchHHhChHhHhh
Confidence 89999999999 58999999999999 9999999999888765
No 125
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=99.33 E-value=9.3e-12 Score=119.76 Aligned_cols=103 Identities=25% Similarity=0.308 Sum_probs=83.5
Q ss_pred eEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCC
Q 010244 364 PLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 364 ~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g 443 (514)
.++.++|+..+ ++.+..+..+|+..++..++|++|||.+|+.+|.+.|+|||.++|+++
T Consensus 151 ilikdnHi~~~----------G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~----------- 209 (265)
T TIGR00078 151 VMIKDNHIAAA----------GSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP----------- 209 (265)
T ss_pred eeeeccHHHHh----------CCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH-----------
Confidence 45556665543 233445677888887789999999999999999999999999999776
Q ss_pred HHHHHHHHHcC--CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCC
Q 010244 444 LDGLKTVCLAS--KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 444 ~~~l~~~~~~~--~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+.++++.+.. .+|++|+|||+++|+.++.++|++ +|++ |+++.+
T Consensus 210 -e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd---~Isv-gait~s 255 (265)
T TIGR00078 210 -EEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVD---VISS-GALTHS 255 (265)
T ss_pred -HHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCC---EEEe-CHHHcC
Confidence 5566666544 389999999999999999999999 9999 677754
No 126
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.30 E-value=7e-11 Score=104.91 Aligned_cols=168 Identities=24% Similarity=0.238 Sum_probs=113.8
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEE-------------Ec---CcHHHHHhCCCCeEEeC
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLL-------------IN---DRIDIALACDADGVHLG 385 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------v~---~~~~~a~~~ga~gvhl~ 385 (514)
....++..+|+..|.. ++ .++ ++.+.+..+++++ +- .+++...++|+|-|-+.
T Consensus 3 ~mA~Aa~~gGA~giR~--~~--~~d-------I~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD 71 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRA--NG--VED-------IRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD 71 (192)
T ss_dssp HHHHHHHHCT-SEEEE--ES--HHH-------HHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHCCceEEEc--CC--HHH-------HHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe
Confidence 3466788899887744 33 222 2222233345553 21 24667778999988775
Q ss_pred CCCCC-----HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEE
Q 010244 386 QSDMP-----ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVA 460 (514)
Q Consensus 386 ~~~~~-----~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a 460 (514)
....+ ...+++.+....++++.|.|.+|+..|.++|+|+|+..-...|...++ ....++.++++++. ++||+|
T Consensus 72 aT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~-~~pvIa 149 (192)
T PF04131_consen 72 ATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA-DVPVIA 149 (192)
T ss_dssp -SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT-TSEEEE
T ss_pred cCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC-CCcEee
Confidence 43321 122233333348999999999999999999999999877777776555 55578999999986 899999
Q ss_pred ECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 461 IGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 461 ~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.|+|+ |+.+.+++++||+ .|.+||+|+ .|...+++|.+.+++
T Consensus 150 EGri~tpe~a~~al~~GA~---aVVVGsAIT---rP~~It~~F~~ai~~ 192 (192)
T PF04131_consen 150 EGRIHTPEQAAKALELGAH---AVVVGSAIT---RPQEITKRFVDAIKK 192 (192)
T ss_dssp ESS--SHHHHHHHHHTT-S---EEEE-HHHH----HHHHHHHHHHHCHH
T ss_pred cCCCCCHHHHHHHHhcCCe---EEEECcccC---CHHHHHHHHHHHHhC
Confidence 99996 9999999999999 999999999 788999999888764
No 127
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.29 E-value=5.2e-11 Score=112.65 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=108.5
Q ss_pred hcCceEEEc---C---cHHHHHhCCCCeEEeCCCCCC----HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEec-
Q 010244 360 VHGVPLLIN---D---RIDIALACDADGVHLGQSDMP----ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG- 428 (514)
Q Consensus 360 ~~~~~l~v~---~---~~~~a~~~ga~gvhl~~~~~~----~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~- 428 (514)
..+++++.- + ..+...++|+|.+--+....+ ....+..+ +..+.+.|.|++|+.++.+.|+|+|...
T Consensus 72 ~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~~f--~~~fmad~~~l~EAlrai~~GadmI~Ttg 149 (293)
T PRK04180 72 AVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYHIDKWDF--TVPFVCGARNLGEALRRIAEGAAMIRTKG 149 (293)
T ss_pred hCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHHHHHc--CCCEEccCCCHHHHHHHHHCCCCeeeccC
Confidence 345666542 2 244556788888842221111 22333333 7788889999999999999999999665
Q ss_pred -----------------------cccCCCCC----CCCccCCHHHHHHHHHcCCCCEE--EECCC-CcccHHHHHHCCCC
Q 010244 429 -----------------------GVYPTNTK----ANNLTVGLDGLKTVCLASKLPVV--AIGGI-GISNASDVMKIGVS 478 (514)
Q Consensus 429 -----------------------~vf~t~~k----~~~~~~g~~~l~~~~~~~~~pv~--a~GGi-~~~~~~~~~~~Ga~ 478 (514)
-.-.|... ......+++.++++++..++||+ |+||| +++|+..++++|++
T Consensus 150 e~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAd 229 (293)
T PRK04180 150 EAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGAD 229 (293)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCC
Confidence 22222211 11134689999999998899998 99999 89999999999999
Q ss_pred CCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 479 NLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 479 ~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
+|+++|+||+++||.+.+++|++.+..+
T Consensus 230 ---gVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 230 ---GVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred ---EEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998875
No 128
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.29 E-value=2.4e-10 Score=106.08 Aligned_cols=169 Identities=24% Similarity=0.229 Sum_probs=121.3
Q ss_pred HHcCCCcCEEEEcccCC--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcc--cceEEcCCHHH
Q 010244 84 VLSDMQVDVVKTGMLPS--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLP--MADIVTPNVKE 159 (514)
Q Consensus 84 l~~~~~~~~i~~G~~~~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~--~~diitpN~~E 159 (514)
+.+-.+.-.|.+|.+.. .+.+....+.+++.+.| +|+|||-... .-+ ...+..+++. +.++|..|..|
T Consensus 52 ~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~P-vvLDPVgvgA---t~~----R~~~~~~LL~~~~~~~IrGN~sE 123 (265)
T COG2145 52 FAKIADALLINIGTLSAERIQAMRAAIKAANESGKP-VVLDPVGVGA---TKF----RTKFALELLAEVKPAAIRGNASE 123 (265)
T ss_pred HHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCC-EEecCccCCc---hHH----HHHHHHHHHHhcCCcEEeccHHH
Confidence 33333567788899854 34566677777777775 9999986532 222 2233334444 36899999999
Q ss_pred HHHhhCCC------C-CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcch
Q 010244 160 ASALLGGM------Q-VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCT 232 (514)
Q Consensus 160 ~~~L~g~~------~-~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~ 232 (514)
...|.|.. + ....++..++++.+.+.....|++||.. +++.++.+.+.+.....-.-..+|+||+
T Consensus 124 I~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~~~vvvvTG~v--------D~Isdg~~~~~i~nG~pll~~ItGtGCl 195 (265)
T COG2145 124 IAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKYGTVVVVTGEV--------DYISDGTRVVVIHNGSPLLGKITGTGCL 195 (265)
T ss_pred HHHHhcccccccccccccchhhHHHHHHHHHHHhCcEEEEECCe--------eEEEcCCeEEEEECCCcHHhhhhccccH
Confidence 99998722 1 1345678888988988877889999877 8888888766655433222367999999
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhccccc
Q 010244 233 LASCIAAELAKGSP-MLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 233 f~a~i~~~l~~g~~-l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
++|.++++++...+ +.+|+..|+.+...+-+.+.+.
T Consensus 196 lgav~aaF~av~~d~~~~A~~~A~~~~~iAge~A~~~ 232 (265)
T COG2145 196 LGAVVAAFLAVEKDPLLDAAAEACAVYGIAGELAAER 232 (265)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 6899888888877776666543
No 129
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=99.28 E-value=9.7e-11 Score=109.59 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=140.3
Q ss_pred EEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHH-H-hhcCceEEEcC---cHHHHHh
Q 010244 306 AVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQI-C-CVHGVPLLIND---RIDIALA 376 (514)
Q Consensus 306 ~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~-~-~~~~~~l~v~~---~~~~a~~ 376 (514)
.|+|+-++. ....+.+.++++-+.|++++++-.-+..- .-=.+.++.+++. + ..++++|++.+ +++...+
T Consensus 5 ~i~pSil~a-d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~ 83 (223)
T PRK08745 5 AIAPSILSA-DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFAD 83 (223)
T ss_pred EEEeehhhc-CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHH
Confidence 455554443 12356778888889999999995543221 1112345556554 2 34678899865 3455678
Q ss_pred CCCCeE--EeCCCCCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHH
Q 010244 377 CDADGV--HLGQSDMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCL 452 (514)
Q Consensus 377 ~ga~gv--hl~~~~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~ 452 (514)
+|++-+ |..........++..+..+...|++.. |+-|...-+-.-+|+|.+..|-|...-+..-+-.++.++++++
T Consensus 84 ~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~ 163 (223)
T PRK08745 84 AGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRK 163 (223)
T ss_pred hCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHH
Confidence 899965 666544444455556667888887765 5555444333459999999999876655555556677777765
Q ss_pred cC-----CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 453 AS-----KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 453 ~~-----~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.. ++.+.+.|||+.+|+..+.++||+ .+.+||++|.++|+.+.++++++.+.+
T Consensus 164 ~~~~~~~~~~IeVDGGI~~eti~~l~~aGaD---i~V~GSaiF~~~d~~~~~~~lr~~~~~ 221 (223)
T PRK08745 164 KIDALGKPIRLEIDGGVKADNIGAIAAAGAD---TFVAGSAIFNAPDYAQVIAQMRAAVAA 221 (223)
T ss_pred HHHhcCCCeeEEEECCCCHHHHHHHHHcCCC---EEEEChhhhCCCCHHHHHHHHHHHHHh
Confidence 42 467999999999999999999999 999999999999999999999988755
No 130
>PRK06801 hypothetical protein; Provisional
Probab=99.27 E-value=1.1e-10 Score=113.05 Aligned_cols=146 Identities=17% Similarity=0.271 Sum_probs=118.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+++++++|.+.|++|.+..+.++..+..+++.++|+.+|+.+ ..++|. +++.+..+ ....
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V--------E~ElG~----vgg~e~~v-----~~~~ 149 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV--------EAELGA----VGGDEGGA-----LYGE 149 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE--------EeecCc----ccCCCCCc-----ccCC
Confidence 467899999999999999999999999999999999999998843 223332 44443221 0011
Q ss_pred CcEEEEecC-CHHHHHHhh-hCCCcEEEeccccCCCCCCCC-ccCCHHHHHHHHHcCCCCEEEECC--CCcccHHHHHHC
Q 010244 401 DKIIGVSCK-TPEEAHQAW-IDGANYIGCGGVYPTNTKANN-LTVGLDGLKTVCLASKLPVVAIGG--IGISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~-~~~e~~~a~-~~g~d~v~~~~vf~t~~k~~~-~~~g~~~l~~~~~~~~~pv~a~GG--i~~~~~~~~~~~ 475 (514)
. +.+++ +++|+.+.. +.|+||+.+ +++++-++... +.++++.++++++.+++|+++.|| |+.+++.++.++
T Consensus 150 ~---~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~ 225 (286)
T PRK06801 150 A---DSAKFTDPQLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIEL 225 (286)
T ss_pred c---ccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHc
Confidence 1 34555 579998888 899999999 88888777654 458999999999988999999999 999999999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|+. +|.+.+.++
T Consensus 226 Gi~---KINv~T~~~ 237 (286)
T PRK06801 226 GIH---KINFYTGMS 237 (286)
T ss_pred CCc---EEEehhHHH
Confidence 999 999999997
No 131
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.2e-11 Score=114.28 Aligned_cols=162 Identities=20% Similarity=0.259 Sum_probs=112.6
Q ss_pred CcCEEEE-ccc--CCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhC
Q 010244 89 QVDVVKT-GML--PSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLG 165 (514)
Q Consensus 89 ~~~~i~~-G~~--~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g 165 (514)
+..++.+ |+. -+++.+..+.+.+.+.+.+ .++.- +. .+.....-+.+ .+++|++|+|..|+.|++.++.
T Consensus 159 ka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~-~~lnl-----sa-pfI~q~~~~~l-~~v~~y~DiifgNe~EA~af~~ 230 (343)
T KOG2854|consen 159 KAKVFYVAGFFLTVSPDAIRKVAQHAAENNRV-FTLNL-----SA-PFISQFFKDAL-DKVLPYADIIFGNEDEAAAFAR 230 (343)
T ss_pred heeEEEEEEEEEEeChHHHHHHHHHHHHhcch-hheec-----cc-hhHHHHHHHHH-HhhcCcceEEEcCHHHHHHHHH
Confidence 3455554 443 3588999999999887764 44331 00 12223333334 4789999999999999999986
Q ss_pred CCCCCCHHHHHHHHHHHH---h---cCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccC---CCCCCCCcchHHHH
Q 010244 166 GMQVVTVADMCSAAKLLH---N---LGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVN---TRNTHGTGCTLASC 236 (514)
Q Consensus 166 ~~~~~~~~~~~~~a~~l~---~---~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~GaGD~f~a~ 236 (514)
.....+ .+..+.+..+. + ..++.+++|-|..+ .+...++....++..+.+ ++|++|+||+|+|+
T Consensus 231 ~~~~~t-~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~------~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgG 303 (343)
T KOG2854|consen 231 AHGWET-KDVKEIALKLSALPKVNGTRPRTVVITQGPDP------VIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGG 303 (343)
T ss_pred hhCCcc-cchHHHhhHhhccccccccccceEEEccCCCc------eEEecCCceEEeccccccceeeeeCCCchHHHHHH
Confidence 222222 22333333332 2 34678999999876 666666666666655543 67999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Q 010244 237 IAAELAKGSPMLSAVKVAKCFVETALDYS 265 (514)
Q Consensus 237 i~~~l~~g~~l~~A~~~A~~~~~~~i~~~ 265 (514)
|++.|.+|.+++++++.+..+++.+|+..
T Consensus 304 Fl~~l~qg~~l~~cir~g~~aa~~vi~~~ 332 (343)
T KOG2854|consen 304 FLSQLVQGKSLEECIRAGSYAASHVIRRV 332 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhheeecc
Confidence 99999999999999999999988888863
No 132
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.27 E-value=9.1e-11 Score=110.68 Aligned_cols=151 Identities=23% Similarity=0.223 Sum_probs=111.5
Q ss_pred HHHHHhhcCceEEE---cC---cHHHHHhCCCCeEEeCCCCCC----HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCc
Q 010244 354 CLQICCVHGVPLLI---ND---RIDIALACDADGVHLGQSDMP----ARTARALLGPDKIIGVSCKTPEEAHQAWIDGAN 423 (514)
Q Consensus 354 ~~~~~~~~~~~l~v---~~---~~~~a~~~ga~gvhl~~~~~~----~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d 423 (514)
|+++-+...+|++= -+ ..+...++|+|.+--+....+ ....+.. .+..+.+.|.|++|+.++.+.|+|
T Consensus 59 I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~K~~--f~vpfmad~~~l~EAlrai~~Gad 136 (287)
T TIGR00343 59 IKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWTFHIDKKK--FKVPFVCGARDLGEALRRINEGAA 136 (287)
T ss_pred HHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCCCcHHHHHHHHHHH--cCCCEEccCCCHHHHHHHHHCCCC
Confidence 33344445677752 23 345667889998843222222 1223332 377888899999999999999999
Q ss_pred EEEeccccCCCC----------------------C-------CCCccCCHHHHHHHHHcCCCCEE--EECCC-CcccHHH
Q 010244 424 YIGCGGVYPTNT----------------------K-------ANNLTVGLDGLKTVCLASKLPVV--AIGGI-GISNASD 471 (514)
Q Consensus 424 ~v~~~~vf~t~~----------------------k-------~~~~~~g~~~l~~~~~~~~~pv~--a~GGi-~~~~~~~ 471 (514)
+|...---.|.. . ......+++.++++++..++||+ |+||| |++|+..
T Consensus 137 mI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~ 216 (287)
T TIGR00343 137 MIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAAL 216 (287)
T ss_pred EEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHH
Confidence 997642222221 0 00123689999999998899998 99999 9999999
Q ss_pred HHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 472 VMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 472 ~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
++++|++ ||++||+||+++||.+.+++|++.+..+
T Consensus 217 ~melGAd---GVaVGSaI~ks~dP~~~akafv~ai~~~ 251 (287)
T TIGR00343 217 MMQLGAD---GVFVGSGIFKSSNPEKLAKAIVEATTHY 251 (287)
T ss_pred HHHcCCC---EEEEhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 9999999 9999999999999999999999988765
No 133
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=7.9e-10 Score=98.28 Aligned_cols=181 Identities=21% Similarity=0.205 Sum_probs=130.5
Q ss_pred eCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEE-------------E---cCcH
Q 010244 308 TDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLL-------------I---NDRI 371 (514)
Q Consensus 308 t~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------v---~~~~ 371 (514)
.++++.. ++-......++.++|+..+ |..+.. .++.+....+++++ + -.++
T Consensus 25 ~~~pl~~--~~iv~~mA~Aa~~gGAvgi--R~~gv~---------dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeV 91 (229)
T COG3010 25 PGEPLDS--PEIVAAMALAAEQGGAVGI--RIEGVE---------DIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEV 91 (229)
T ss_pred CCCCCcc--hhHHHHHHHHHHhCCcceE--eecchh---------hHHHHHhhCCCCeEEEEecCCCCCCceecccHHHH
Confidence 3444443 2345556667778886555 554322 23333334455553 2 1257
Q ss_pred HHHHhCCCCeEEeCCCC--CC----HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHH
Q 010244 372 DIALACDADGVHLGQSD--MP----ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLD 445 (514)
Q Consensus 372 ~~a~~~ga~gvhl~~~~--~~----~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~ 445 (514)
+...+.|++-+-+.... .+ ...+++...++.++++.|.|++|...|.++|+|+|+..-...|...+......++
T Consensus 92 d~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~ 171 (229)
T COG3010 92 DALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQ 171 (229)
T ss_pred HHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHH
Confidence 77888999987664422 12 2234556678999999999999999999999999998776777644444445788
Q ss_pred HHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 446 GLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 446 ~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.++++++ .+.+|+|.|.++ |+.+..+++.|++ +|.+||+|+ .|...+++|.+.+++
T Consensus 172 lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~---aVvVGsAIT---Rp~~It~~F~~~ik~ 228 (229)
T COG3010 172 LVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIGAD---AVVVGSAIT---RPEEITQWFVDAIKS 228 (229)
T ss_pred HHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCe---EEEECcccC---CHHHHHHHHHHHHhc
Confidence 8999887 699999999997 9999999999999 999999999 677888888887764
No 134
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=3.2e-10 Score=103.45 Aligned_cols=199 Identities=19% Similarity=0.190 Sum_probs=144.9
Q ss_pred EEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCC----HHHHHHHHHHHHHHH-hhcCceEEEcC---cHHHHHh
Q 010244 305 YAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDAD----TRGFLEAAKACLQIC-CVHGVPLLIND---RIDIALA 376 (514)
Q Consensus 305 y~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~----~~~~~~~~~~~~~~~-~~~~~~l~v~~---~~~~a~~ 376 (514)
+.|.|+-++-. ...+.+.++++.++|++++++---+.. -.--...++.+++.. ...+++|+|.+ +++...+
T Consensus 4 ~~iapSILsaD-~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~ 82 (220)
T COG0036 4 MKIAPSILSAD-FARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAK 82 (220)
T ss_pred ceeeeehhhCC-HhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHH
Confidence 44555544322 245777888888999999999554321 111123344455543 34678899866 4566778
Q ss_pred CCCCeE--EeCCCCCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHH
Q 010244 377 CDADGV--HLGQSDMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCL 452 (514)
Q Consensus 377 ~ga~gv--hl~~~~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~ 452 (514)
+||+.+ |..........++..+..+...|++-+ |+-|...-.-.-+|+|.+..|.|...-+..-+.-++.++++++
T Consensus 83 agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~ 162 (220)
T COG0036 83 AGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRA 162 (220)
T ss_pred hCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHH
Confidence 999965 777554555666666677889998775 8888777666679999999999987766665556788888877
Q ss_pred cCC----CCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHH
Q 010244 453 ASK----LPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLM 507 (514)
Q Consensus 453 ~~~----~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~ 507 (514)
..+ +-+-+-|||+.+|++++.++||+ .+.+||++|..+|..+..+.++....
T Consensus 163 ~~~~~~~~~IeVDGGI~~~t~~~~~~AGad---~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 163 MIDERLDILIEVDGGINLETIKQLAAAGAD---VFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred HhcccCCeEEEEeCCcCHHHHHHHHHcCCC---EEEEEEEEeCCccHHHHHHHHHHHhh
Confidence 653 35889999999999999999999 99999999999887777777776654
No 135
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.23 E-value=7.6e-11 Score=113.78 Aligned_cols=90 Identities=23% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC
Q 010244 388 DMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG 465 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~ 465 (514)
+.+...+|+..++..++|++|||.+|+.+|.+.|+|||.++|++ ++.++++++.. ++|++|+||||
T Consensus 169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~------------~e~l~~~~~~~~~~ipi~AiGGI~ 236 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS------------PEELREAVALLKGRVLLEASGGIT 236 (268)
T ss_pred HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC------------HHHHHHHHHHcCCCCcEEEECCCC
Confidence 34567788887778899999999999999999999999999975 47778877765 59999999999
Q ss_pred cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 466 ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 466 ~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
++|+.++.++|++ +|++++...++
T Consensus 237 ~~ni~~~a~~Gvd---~Iav~sl~~~a 260 (268)
T cd01572 237 LENIRAYAETGVD---YISVGALTHSA 260 (268)
T ss_pred HHHHHHHHHcCCC---EEEEEeeecCC
Confidence 9999999999999 99999876643
No 136
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.22 E-value=1.3e-10 Score=109.49 Aligned_cols=164 Identities=26% Similarity=0.268 Sum_probs=113.5
Q ss_pred CcCEEEEcccCC--HHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhc--ccceEEcCCHHHHHHhh
Q 010244 89 QVDVVKTGMLPS--TDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLL--PMADIVTPNVKEASALL 164 (514)
Q Consensus 89 ~~~~i~~G~~~~--~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll--~~~diitpN~~E~~~L~ 164 (514)
++-+|.+|.+.+ .+.+....+.+++.+.| +|||||-... . .....+..+|+ .+.++|+.|..|...|.
T Consensus 51 ~al~iNiGTl~~~~~~~m~~A~~~A~~~~~P-vVLDPVgvGa---s----~~R~~~~~~LL~~~~~~vIrGN~sEI~aLa 122 (246)
T PF02110_consen 51 DALVINIGTLTDERIEAMKKAAKAANELGIP-VVLDPVGVGA---S----KFRTEFALELLNNYKPTVIRGNASEIAALA 122 (246)
T ss_dssp SEEEEESTTSSHHHHHHHHHHHHHHHHTT---EEEE-TTBTT---B----HHHHHHHHHHHCHS--SEEEEEHHHHHHHH
T ss_pred CEEEEECCCCCHhHHHHHHHHHHHHHHcCCC-EEEeCcccCC---c----HHHHHHHHHHHHhCCCcEEEeCHHHHHHHh
Confidence 344455566533 24566667777777775 9999986532 1 22233333555 46799999999999999
Q ss_pred CCCC-------CCCHHHHHHHHHHHHhcCCCeEEEecccCCCCCCceEEEEeCCeEEEEeecccCCCCCCCCcchHHHHH
Q 010244 165 GGMQ-------VVTVADMCSAAKLLHNLGPRTVLVKGGDLPDSSDAVDIFFDGEDFHELRSSRVNTRNTHGTGCTLASCI 237 (514)
Q Consensus 165 g~~~-------~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~a~i 237 (514)
|... ..+.++..+.++++.+++...|++||.. +++.++.+.+.++....-.-..+|+||++++.+
T Consensus 123 g~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvTG~~--------D~Isdg~~~~~i~nG~~~l~~itGtGC~lgali 194 (246)
T PF02110_consen 123 GEDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVTGEV--------DYISDGNRVYRIPNGSPLLSKITGTGCMLGALI 194 (246)
T ss_dssp TCCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEESSS--------EEEEESSCEEEECSSSGGGGGSTTHHHHHHHHH
T ss_pred CcCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEecCC--------cEEECCCeEEEeCCCChHhcceeccchHHHHHH
Confidence 8321 1122346788999998888899999987 889888887776654333336799999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccccc
Q 010244 238 AAELAKGSPMLSAVKVAKCFVETALDYSKDI 268 (514)
Q Consensus 238 ~~~l~~g~~l~~A~~~A~~~~~~~i~~~~~~ 268 (514)
+++++...+..+|+..|..+...+-+.+.+.
T Consensus 195 aaf~av~~d~~~aa~~a~~~~~~Age~A~~~ 225 (246)
T PF02110_consen 195 AAFLAVAEDPLEAAVAAVALYGIAGELAAEK 225 (246)
T ss_dssp HHHHCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888888888888877776665543
No 137
>PRK08005 epimerase; Validated
Probab=99.16 E-value=6.6e-10 Score=102.69 Aligned_cols=183 Identities=13% Similarity=0.050 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHHH-hhcCceEEEcC---cHHHHHhCCCCeE--EeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQIC-CVHGVPLLIND---RIDIALACDADGV--HLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~v~~---~~~~a~~~ga~gv--hl~~~ 387 (514)
..+.+.++++.++|++++++-.-+..- .-=.+.++.+++.+ ..++++|++.+ +++...++|++.+ |....
T Consensus 13 ~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~ 92 (210)
T PRK08005 13 LRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESV 92 (210)
T ss_pred HHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCc
Confidence 356778888999999999995543221 11123344555443 24678899865 4456678899965 65543
Q ss_pred CCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCC
Q 010244 388 DMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGI 464 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi 464 (514)
......++..+..+...|.+.. |+-+..+-.-.-+|+|.+..|.|...-+..-+..++.++++++.. ...+.+-|||
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI 172 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGI 172 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCC
Confidence 3334455656666788887665 544433333335999999999887665555555678888887765 3479999999
Q ss_pred CcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 465 GISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 465 ~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
+.+|+..+.++||+ .+.+||++|.++|+.+..+.+-
T Consensus 173 ~~~~i~~l~~aGad---~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 173 TLRAARLLAAAGAQ---HLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred CHHHHHHHHHCCCC---EEEEChHhhCCCCHHHHHHHHh
Confidence 99999999999999 9999999998888877776653
No 138
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=99.16 E-value=6.6e-10 Score=103.65 Aligned_cols=198 Identities=18% Similarity=0.106 Sum_probs=135.5
Q ss_pred eEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHH----HHHHHHHHHHHHhhcCceEEEcC---cHHHHH
Q 010244 303 FLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRG----FLEAAKACLQICCVHGVPLLIND---RIDIAL 375 (514)
Q Consensus 303 ~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~----~~~~~~~~~~~~~~~~~~l~v~~---~~~~a~ 375 (514)
.-|.|+|+-++.. ...+.+.++++.+.|++++++---+..-.. =...++.+++ ...+++++++.+ +++...
T Consensus 11 ~~~~I~pSil~ad-~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~ 88 (228)
T PRK08091 11 KQQPISVGILASN-WLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACV 88 (228)
T ss_pred cCCeEEeehhhcC-HHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHH
Confidence 4466777655431 245777888899999999999654322100 0122333332 224678899876 345667
Q ss_pred hCCCCeE--EeCCCCCCHHHHHhhcCCCc--EEEEecC--CHH-HHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHH
Q 010244 376 ACDADGV--HLGQSDMPARTARALLGPDK--IIGVSCK--TPE-EAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLK 448 (514)
Q Consensus 376 ~~ga~gv--hl~~~~~~~~~~~~~~~~~~--~ig~s~~--~~~-e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~ 448 (514)
++|++.+ |..........++..+..+. ..|.... |+- .+..... -+|+|.+..|.|....+..-+..++.++
T Consensus 89 ~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgGQ~f~~~~l~KI~ 167 (228)
T PRK08091 89 AAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGTKAPSDLILDRVI 167 (228)
T ss_pred HhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCCccccHHHHHHHH
Confidence 8899965 76654433344455555566 7776654 544 4544444 4999999999987665554444567777
Q ss_pred HHHHcC-----CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHH
Q 010244 449 TVCLAS-----KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVL 506 (514)
Q Consensus 449 ~~~~~~-----~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~ 506 (514)
++++.. ++.+.+-|||+.+|+..+.++||+ .+.+||++|+++|+.+..+++++.+
T Consensus 168 ~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD---~~V~GSalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 168 QVENRLGNRRVEKLISIDGSMTLELASYLKQHQID---WVVSGSALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred HHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCC---EEEEChhhhCCCCHHHHHHHHHHhh
Confidence 776532 466999999999999999999999 9999999999889999988888654
No 139
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=99.16 E-value=4.8e-10 Score=106.13 Aligned_cols=199 Identities=15% Similarity=0.120 Sum_probs=133.8
Q ss_pred EeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHHH--hhcCceEEEcC---cHHHHHhC
Q 010244 307 VTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQIC--CVHGVPLLIND---RIDIALAC 377 (514)
Q Consensus 307 it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~~--~~~~~~l~v~~---~~~~a~~~ 377 (514)
|+++-++. ....+.+.++++.+.|++++++-.-+..- ..=.+.++.+++.+ ...++++++++ .++.+.++
T Consensus 9 i~pSi~~~-d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~ 87 (228)
T PTZ00170 9 IAPSILAA-DFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKA 87 (228)
T ss_pred EehhHhhc-CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHc
Confidence 55554443 12356778888889999999996543221 11123445555544 12456777655 45567788
Q ss_pred CCCeE--EeCCCCC-CHHHHHhhcCCCcEEEEecC---CHHHHHHhhh-CCCcEEEeccccCCCCCCCCccCCHHHHHHH
Q 010244 378 DADGV--HLGQSDM-PARTARALLGPDKIIGVSCK---TPEEAHQAWI-DGANYIGCGGVYPTNTKANNLTVGLDGLKTV 450 (514)
Q Consensus 378 ga~gv--hl~~~~~-~~~~~~~~~~~~~~ig~s~~---~~~e~~~a~~-~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~ 450 (514)
|+|.+ |...... ....++.....+..+|++.. +.+++....+ ..+|+|.+..+.|........+-.++.++++
T Consensus 88 Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~ 167 (228)
T PTZ00170 88 GASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVREL 167 (228)
T ss_pred CCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHH
Confidence 99965 5544332 22333433445778887765 3555554432 3489997766665444333333457788888
Q ss_pred HHcC-CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 451 CLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 451 ~~~~-~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
++.. +..+.+.|||+++|+..+.++|++ .+.+||+|++++||.+.++++++.+++.
T Consensus 168 ~~~~~~~~I~VdGGI~~~ti~~~~~aGad---~iVvGsaI~~a~d~~~~~~~i~~~~~~~ 224 (228)
T PTZ00170 168 RKRYPHLNIQVDGGINLETIDIAADAGAN---VIVAGSSIFKAKDRKQAIELLRESVQKH 224 (228)
T ss_pred HHhcccCeEEECCCCCHHHHHHHHHcCCC---EEEEchHHhCCCCHHHHHHHHHHHHHHH
Confidence 8765 577889999999999999999999 9999999999999999999999998763
No 140
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.3e-09 Score=95.57 Aligned_cols=190 Identities=15% Similarity=0.138 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHH----HHHHHHHHHHh-h--cCceEEEcC---cHHHHHhCCCCe--EEeC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFL----EAAKACLQICC-V--HGVPLLIND---RIDIALACDADG--VHLG 385 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~----~~~~~~~~~~~-~--~~~~l~v~~---~~~~a~~~ga~g--vhl~ 385 (514)
..+.+.+.+.++.|++|+++---+..-.--+ -.++.+++-.. . ++++++|.+ .++--..+||+. +|..
T Consensus 17 anL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E 96 (224)
T KOG3111|consen 17 ANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYE 96 (224)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEe
Confidence 4577778889999999999954332211101 12344444222 2 677888865 345566788885 4887
Q ss_pred CCCCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEE-EEC
Q 010244 386 QSDMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVV-AIG 462 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~-a~G 462 (514)
..+.....+++.+..+..+|+... |+-|...-...-+|++++..|.|....+..-.--...++++++..+.+.+ .-|
T Consensus 97 ~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDG 176 (224)
T KOG3111|consen 97 ATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDG 176 (224)
T ss_pred eccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecC
Confidence 766666777888888999998876 54444444445689999999988654444322335678888877755544 999
Q ss_pred CCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 463 GIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 463 Gi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
|++++|+..+.++||+ .+..||+++.+.||.+..+.+++.+.++.
T Consensus 177 Gv~~~ti~~~a~AGAN---~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 177 GVGPSTIDKAAEAGAN---MIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred CcCcchHHHHHHcCCC---EEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 9999999999999999 99999999999999999999999988754
No 141
>PRK08185 hypothetical protein; Provisional
Probab=99.13 E-value=1.7e-09 Score=104.49 Aligned_cols=141 Identities=21% Similarity=0.322 Sum_probs=115.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.++.+++.|.+.|++|.++++.++..++.+++.++|+.+|+.+- .++ |. ++....
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE--------~El---G~-vg~~e~----------- 137 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE--------GEL---GT-IGNTGT----------- 137 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE--------EEE---ee-ccCccc-----------
Confidence 4568899999999999999999999999999999999999999881 222 22 443221
Q ss_pred CcEEEE---ecCCHHHHHHhhhC-CCcEEEe-----ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccH
Q 010244 401 DKIIGV---SCKTPEEAHQAWID-GANYIGC-----GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNA 469 (514)
Q Consensus 401 ~~~ig~---s~~~~~e~~~a~~~-g~d~v~~-----~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~ 469 (514)
+..++. ..|+++|+.+..+. |+||+.+ +++|++.+||+ +.++.++++++.+++|+++.||++ .+++
T Consensus 138 ~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~---L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~ 214 (283)
T PRK08185 138 SIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPE---LQMDLLKEINERVDIPLVLHGGSANPDAEI 214 (283)
T ss_pred ccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCC---cCHHHHHHHHHhhCCCEEEECCCCCCHHHH
Confidence 111122 26799999999977 9999999 99999877765 459999999998899999999996 5789
Q ss_pred HHHHHCCCCCCceEEEeeccc
Q 010244 470 SDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~ 490 (514)
..+.+.|.. -|=+.+.+.
T Consensus 215 ~~ai~~GI~---KiNi~T~l~ 232 (283)
T PRK08185 215 AESVQLGVG---KINISSDMK 232 (283)
T ss_pred HHHHHCCCe---EEEeChHHH
Confidence 999999999 998888875
No 142
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.12 E-value=4.1e-10 Score=104.34 Aligned_cols=165 Identities=25% Similarity=0.270 Sum_probs=116.6
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHH-HHHHHHHhhcCceEEEc----CcH-------HHHHhCCCCeEEeCC
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAA-KACLQICCVHGVPLLIN----DRI-------DIALACDADGVHLGQ 386 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~----~~~-------~~a~~~ga~gvhl~~ 386 (514)
...+.++.+.++|+++++++....+........ +.+...++..+.+++++ +.. +.+.+.|+|+|+++.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 467788889899999999988766554432211 12444555666776653 222 367889999999988
Q ss_pred CCCC-----H---HHHHhhcCCCcEEEEecCCHHHHHH--hhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCC
Q 010244 387 SDMP-----A---RTARALLGPDKIIGVSCKTPEEAHQ--AWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKL 456 (514)
Q Consensus 387 ~~~~-----~---~~~~~~~~~~~~ig~s~~~~~e~~~--a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~ 456 (514)
.... . ..+++.. ++..++..++...+... +.+.|+|++.+++.+++..+....+.....+..++...++
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (200)
T cd04722 93 AVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKV 171 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCC
Confidence 8752 2 2334433 36788888876555444 4789999999999888776554332233455566666789
Q ss_pred CEEEECCCCc-ccHHHHHHCCCCCCceEEEee
Q 010244 457 PVVAIGGIGI-SNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 457 pv~a~GGi~~-~~~~~~~~~Ga~~~~gva~~~ 487 (514)
||++.|||+. +++.++++.||+ +|.+||
T Consensus 172 pi~~~GGi~~~~~~~~~~~~Gad---~v~vgs 200 (200)
T cd04722 172 PVIAGGGINDPEDAAEALALGAD---GVIVGS 200 (200)
T ss_pred CEEEECCCCCHHHHHHHHHhCCC---EEEecC
Confidence 9999999997 999999999999 999886
No 143
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=99.12 E-value=3.5e-10 Score=109.56 Aligned_cols=87 Identities=30% Similarity=0.315 Sum_probs=72.3
Q ss_pred CCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC----CCCEEEECCC
Q 010244 389 MPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS----KLPVVAIGGI 464 (514)
Q Consensus 389 ~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~----~~pv~a~GGi 464 (514)
.....+|+..++...++++|||++|+.+|.+.|+|||.+++++| +.++++.+.. ++|++|+|||
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~~~i~i~asGGI 236 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSP------------EELKEAVKLLKGLPRVLLEASGGI 236 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccCCCeEEEEECCC
Confidence 34667787777688999999999999999999999999999877 3344444333 7899999999
Q ss_pred CcccHHHHHHCCCCCCceEEEeecccC
Q 010244 465 GISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 465 ~~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
|++|+.++.++|++ +|+++ +++.
T Consensus 237 t~~ni~~~a~~Gad---~Isvg-al~~ 259 (269)
T cd01568 237 TLENIRAYAETGVD---VISTG-ALTH 259 (269)
T ss_pred CHHHHHHHHHcCCC---EEEEc-HHHc
Confidence 99999999999999 99985 4443
No 144
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=99.11 E-value=4.1e-10 Score=108.65 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=75.3
Q ss_pred CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC--CCEEEECCCCcc
Q 010244 390 PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK--LPVVAIGGIGIS 467 (514)
Q Consensus 390 ~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~--~pv~a~GGi~~~ 467 (514)
.+..+|+..++..+||+||||.+|+.+|.+.|+|||.+. ..|++.++++++..+ +|+.|+|||+++
T Consensus 177 ~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ 244 (277)
T PRK08072 177 AVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGITLE 244 (277)
T ss_pred HHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCCCHH
Confidence 355777777778899999999999999999999999883 268899999988664 778899999999
Q ss_pred cHHHHHHCCCCCCceEEEeecccC
Q 010244 468 NASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
|+.++.++|++ +|++++-..+
T Consensus 245 ni~~~a~~Gvd---~IAvg~l~~s 265 (277)
T PRK08072 245 NLPAYGGTGVD---YISLGFLTHS 265 (277)
T ss_pred HHHHHHHcCCC---EEEEChhhcC
Confidence 99999999999 9999975553
No 145
>PRK14057 epimerase; Provisional
Probab=99.09 E-value=2e-09 Score=101.56 Aligned_cols=199 Identities=14% Similarity=0.077 Sum_probs=135.3
Q ss_pred EEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCH--H--HHHHHHHHHHHHHhhcCceEEEcC---cHHHHHh
Q 010244 304 LYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADT--R--GFLEAAKACLQICCVHGVPLLIND---RIDIALA 376 (514)
Q Consensus 304 ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~--~--~~~~~~~~~~~~~~~~~~~l~v~~---~~~~a~~ 376 (514)
-|.|+|+-++-. ...+.+.++++-+.|++++++---+..- . -=.+.++.+++ ...++++|++.+ +++...+
T Consensus 19 ~~~IspSil~aD-~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~ 96 (254)
T PRK14057 19 SYPLSVGILAGQ-WIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ-TFIKDVHLMVADQWTAAQACVK 96 (254)
T ss_pred CCceEeehhhcC-HHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc-CCCeeEEeeeCCHHHHHHHHHH
Confidence 345666554431 1357778888889999999996543211 0 00123334433 344688999976 3456678
Q ss_pred CCCCeE--EeCCCCCCHHHHHhhcCCCc---------EEEEecC--CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccC
Q 010244 377 CDADGV--HLGQSDMPARTARALLGPDK---------IIGVSCK--TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTV 442 (514)
Q Consensus 377 ~ga~gv--hl~~~~~~~~~~~~~~~~~~---------~ig~s~~--~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~ 442 (514)
+|+|.+ |..........++..+..+. ..|+... |+-| +..... -+|+|.+..|.|...-+..-+-
T Consensus 97 aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-~vD~VLvMtV~PGfgGQ~Fi~~ 175 (254)
T PRK14057 97 AGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS-DVEVIQLLAVNPGYGSKMRSSD 175 (254)
T ss_pred hCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH-hCCEEEEEEECCCCCchhccHH
Confidence 899955 77654433344444433342 5676554 5444 444444 4999999999987766555555
Q ss_pred CHHHHHHHHHcC-----CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 443 GLDGLKTVCLAS-----KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 443 g~~~l~~~~~~~-----~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.++.++++++.. ++.+.+-|||+.+|+..+.++||+ .+.+||++|..+|+.+..+++++.+..
T Consensus 176 ~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad---~~V~GSalF~~~d~~~~i~~l~~~~~~ 243 (254)
T PRK14057 176 LHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGID---RVVSGSALFRDDRLVENTRSWRAMFKV 243 (254)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCC---EEEEChHhhCCCCHHHHHHHHHHHHhh
Confidence 667777766543 467999999999999999999999 999999999988999999999876554
No 146
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=99.05 E-value=2.4e-08 Score=90.61 Aligned_cols=194 Identities=16% Similarity=0.108 Sum_probs=131.9
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC---------cHH
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND---------RID 372 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~---------~~~ 372 (514)
+.|.+-.|.... ++..+.++++.+. ++++++ .++.-..+=.+.++.+...+-.++++.| ..+
T Consensus 4 p~LQvALD~~~l----~~Ai~~a~~v~~~-~diiEv----GTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ 74 (217)
T COG0269 4 PLLQVALDLLDL----EEAIEIAEEVADY-VDIIEV----GTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEAR 74 (217)
T ss_pred cceEeeecccCH----HHHHHHHHHhhhc-ceEEEe----CcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHH
Confidence 445555554321 4667777777777 899987 3443333333444444445445666654 367
Q ss_pred HHHhCCCCeEEe-CCCCCCHH--HHHhhcCCCcEE---EEecCCHHHHHHhhh-CCCcEEEeccccCCCCCCCCccCCHH
Q 010244 373 IALACDADGVHL-GQSDMPAR--TARALLGPDKII---GVSCKTPEEAHQAWI-DGANYIGCGGVYPTNTKANNLTVGLD 445 (514)
Q Consensus 373 ~a~~~ga~gvhl-~~~~~~~~--~~~~~~~~~~~i---g~s~~~~~e~~~a~~-~g~d~v~~~~vf~t~~k~~~~~~g~~ 445 (514)
.|.+.|||.+-+ +..+.+.. -++.....+..+ ..++.|+++..+=.+ +|+||+.+.--.+.+.. +. ..+++
T Consensus 75 ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~-G~-~~~~~ 152 (217)
T COG0269 75 MAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAA-GK-SWGED 152 (217)
T ss_pred HHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhc-CC-CccHH
Confidence 899999997744 33333211 111111223332 345778888666555 99999999766664431 21 23567
Q ss_pred HHHHHHHcCC--CCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 446 GLKTVCLASK--LPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 446 ~l~~~~~~~~--~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
.+..+++.++ .+|-..|||+++++..+...|++ -|.+||+|..+.||.+.++++++.+.+.
T Consensus 153 ~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~---ivIvGraIt~a~dp~~~a~~~~~~i~~~ 215 (217)
T COG0269 153 DLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGAD---IVIVGRAITGAKDPAEAARKFKEEIDKI 215 (217)
T ss_pred HHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCC---EEEECchhcCCCCHHHHHHHHHHHHhcc
Confidence 7888887764 79999999999999999999999 9999999999999999999999998764
No 147
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=99.04 E-value=4.9e-10 Score=108.44 Aligned_cols=88 Identities=27% Similarity=0.276 Sum_probs=69.9
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcccH
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGISNA 469 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~~~ 469 (514)
+..+|+.. ++.++|++|||++|+.+|.+.|+|||.++++||+..+ +.++.+++.. ++|++|+|||+++|+
T Consensus 174 v~~~R~~~-~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~p~~l~--------~~~~~~~~~~~~i~i~AsGGI~~~ni 244 (272)
T cd01573 174 LARLRATA-PEKKIVVEVDSLEEALAAAEAGADILQLDKFSPEELA--------ELVPKLRSLAPPVLLAAAGGINIENA 244 (272)
T ss_pred HHHHHHhC-CCCeEEEEcCCHHHHHHHHHcCCCEEEECCCCHHHHH--------HHHHHHhccCCCceEEEECCCCHHHH
Confidence 34556554 4668999999999999999999999999999985321 2333344332 799999999999999
Q ss_pred HHHHHCCCCCCceEEEeecccC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
.++.++|++ +| ++|+++.
T Consensus 245 ~~~~~~Gvd---~I-~vsai~~ 262 (272)
T cd01573 245 AAYAAAGAD---IL-VTSAPYY 262 (272)
T ss_pred HHHHHcCCc---EE-EEChhhc
Confidence 999999999 99 6666765
No 148
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=99.03 E-value=4.6e-09 Score=98.43 Aligned_cols=198 Identities=17% Similarity=0.100 Sum_probs=132.7
Q ss_pred EeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHHH-hhcCceEEEcC---cHHHHHhCC
Q 010244 307 VTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQIC-CVHGVPLLIND---RIDIALACD 378 (514)
Q Consensus 307 it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~~-~~~~~~l~v~~---~~~~a~~~g 378 (514)
|+|+-++.. ...+.+.++++-+ |++++++-.-+..- .-=...++.+++.+ ...+++|++.+ +++...++|
T Consensus 5 I~pSil~ad-~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aG 82 (229)
T PRK09722 5 ISPSLMCMD-LLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAG 82 (229)
T ss_pred EEeehhhcC-HHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcC
Confidence 555544321 1345666776655 89999995533211 11123344555443 34678999976 445667889
Q ss_pred CCeE--EeCCCC-CCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc
Q 010244 379 ADGV--HLGQSD-MPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA 453 (514)
Q Consensus 379 a~gv--hl~~~~-~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~ 453 (514)
++.+ |..... .....++..+..+...|+..+ |+-|...-.-.-+|+|.+..|.|...-+..-+..++.++++++.
T Consensus 83 ad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~ 162 (229)
T PRK09722 83 ADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKAL 162 (229)
T ss_pred CCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHH
Confidence 9965 554322 234455655666778887664 55544443333489999999998766555555566777777654
Q ss_pred C-----CCCEEEECCCCcccHHHHHHCCCCCCceEEEee-cccC-CCCHHHHHHHHHHHHHHH
Q 010244 454 S-----KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVS-ALFD-RECILPESKKLHAVLMDA 509 (514)
Q Consensus 454 ~-----~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~-~i~~-~~~~~~~~~~~~~~~~~~ 509 (514)
. ++.+.+-|||+.+|+.++.++||+ .+.+|| ++|. .+|+.+..+.+++.+++.
T Consensus 163 ~~~~~~~~~IeVDGGI~~~~i~~~~~aGad---~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 163 RERNGLEYLIEVDGSCNQKTYEKLMEAGAD---VFIVGTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred HHhcCCCeEEEEECCCCHHHHHHHHHcCCC---EEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 2 466999999999999999999999 999995 5997 578999999999877654
No 149
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=98.97 E-value=3.9e-08 Score=99.20 Aligned_cols=191 Identities=13% Similarity=0.051 Sum_probs=125.9
Q ss_pred CceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHH----HHHHHHHHHHhh--cCceEEEcC---c-
Q 010244 301 DLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFL----EAAKACLQICCV--HGVPLLIND---R- 370 (514)
Q Consensus 301 ~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~----~~~~~~~~~~~~--~~~~l~v~~---~- 370 (514)
+++|++-.|-.. .++..+.++++-+.++.++.+=. .-+. +.++.+++.... .-+.+.++| .
T Consensus 172 ~p~L~vALD~~~----~~~A~~i~~~l~~~~~~~iKvG~-----~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~v 242 (391)
T PRK13307 172 PPYLQVALDLPD----LEEVERVLSQLPKSDHIIIEAGT-----PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLE 242 (391)
T ss_pred cceEEEecCCCC----HHHHHHHHHhcccccceEEEECH-----HHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHH
Confidence 356666666542 24566666666554456666522 1222 223444433211 223344444 2
Q ss_pred HHHHHhCCCCeE--EeCCCCC-CHHHHHhhcCCCcEEEEe---cCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCH
Q 010244 371 IDIALACDADGV--HLGQSDM-PARTARALLGPDKIIGVS---CKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGL 444 (514)
Q Consensus 371 ~~~a~~~ga~gv--hl~~~~~-~~~~~~~~~~~~~~ig~s---~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~ 444 (514)
.+.+.++|++.+ |...... ....++.....+..+++. ++|+.|..+.+..++|||.++....+... ..++
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~----~~~~ 318 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGT----EHAW 318 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcc----cchH
Confidence 456678999976 5433321 122233334456777773 45777777767889999999974543322 2367
Q ss_pred HHHHHHHHc-CCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHH
Q 010244 445 DGLKTVCLA-SKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLM 507 (514)
Q Consensus 445 ~~l~~~~~~-~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~ 507 (514)
+.++++++. .++++.+.|||+.+++.+++++|++ .+.+||+|++++||.+.+++|++.+.
T Consensus 319 ~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGAD---ivVVGsaIf~a~Dp~~aak~l~~~i~ 379 (391)
T PRK13307 319 GNIKEIKKAGGKILVAVAGGVRVENVEEALKAGAD---ILVVGRAITKSKDVRRAAEDFLNKLK 379 (391)
T ss_pred HHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCC---EEEEeHHHhCCCCHHHHHHHHHHhhc
Confidence 888888874 3789999999999999999999999 99999999999999999999998874
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.96 E-value=6.3e-08 Score=92.98 Aligned_cols=180 Identities=22% Similarity=0.223 Sum_probs=121.8
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHH----HH--------------HHHHHHHHHH-hhcC
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRG----FL--------------EAAKACLQIC-CVHG 362 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~----~~--------------~~~~~~~~~~-~~~~ 362 (514)
+-.|+....+. .+...+.+..+.++|+++++|-.+-.++-. .. +..+.+.++. ...+
T Consensus 14 li~yi~aG~P~----~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 14 LIPYITAGDPD----LETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred EEEEEeCCCCC----HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 44555554332 256888899999999999999766543210 00 1122233333 3346
Q ss_pred ceEEEcC------------cHHHHHhCCCCeEEeCCCCCCHHHHHhh------cCCCcEEEEecCCH-HHHHHhhhCCCc
Q 010244 363 VPLLIND------------RIDIALACDADGVHLGQSDMPARTARAL------LGPDKIIGVSCKTP-EEAHQAWIDGAN 423 (514)
Q Consensus 363 ~~l~v~~------------~~~~a~~~ga~gvhl~~~~~~~~~~~~~------~~~~~~ig~s~~~~-~e~~~a~~~g~d 423 (514)
+++++.. ..+.+.++|++|++++ |++..+.+.. ++...+..++.+|+ +.+....+..-+
T Consensus 90 ~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~g 167 (258)
T PRK13111 90 IPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASG 167 (258)
T ss_pred CCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC
Confidence 6765532 3678889999999996 5555544333 35666777777774 456666667777
Q ss_pred EEEe-ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccC
Q 010244 424 YIGC-GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 424 ~v~~-~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
||-+ +-.-.|..+...+....+.++++++..++|++.-+|| +++++.++++. |+ |+.+||+|.+
T Consensus 168 fIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-AD---GviVGSaiv~ 233 (258)
T PRK13111 168 FVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-AD---GVIVGSALVK 233 (258)
T ss_pred cEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CC---EEEEcHHHHH
Confidence 7754 4434455554444445679999999889999999999 68999999986 99 9999999973
No 151
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.95 E-value=7.3e-09 Score=99.94 Aligned_cols=86 Identities=22% Similarity=0.306 Sum_probs=73.2
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCccc
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISN 468 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~ 468 (514)
...+|+. .+...++++|||.+|+.+|.+.|+|||.+.+ .+++.++++++.. ++|++|+|||+++|
T Consensus 180 v~~~r~~-~~~~~I~VEv~tleea~eA~~~gaD~I~LD~------------~~~e~l~~~v~~~~~~i~leAsGGIt~~n 246 (277)
T PRK05742 180 VAAAHRI-APGKPVEVEVESLDELRQALAAGADIVMLDE------------LSLDDMREAVRLTAGRAKLEASGGINEST 246 (277)
T ss_pred HHHHHHh-CCCCeEEEEeCCHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhCCCCcEEEECCCCHHH
Confidence 4455554 4578899999999999999999999997764 4688888888765 89999999999999
Q ss_pred HHHHHHCCCCCCceEEEeecccCC
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+.++.++|++ +|++|+-..++
T Consensus 247 i~~~a~tGvD---~Isvg~lt~s~ 267 (277)
T PRK05742 247 LRVIAETGVD---YISIGAMTKDV 267 (277)
T ss_pred HHHHHHcCCC---EEEEChhhcCC
Confidence 9999999999 99999866644
No 152
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.85 E-value=2.2e-07 Score=89.30 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC-
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP- 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~- 390 (514)
.+..+.++.+.+.|++.+.+-+-+.+...--.....+.++++..+++++++. +.+.....|++++-++...+.
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~ 106 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVEN 106 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhC
Confidence 3567788888889999888866543211111112233444555678898864 445556779999988765431
Q ss_pred ---HHHHHhhcCCC-cEEEEec---------------------CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHH
Q 010244 391 ---ARTARALLGPD-KIIGVSC---------------------KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLD 445 (514)
Q Consensus 391 ---~~~~~~~~~~~-~~ig~s~---------------------~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~ 445 (514)
...+.+.++.+ ..++.++ .+.+.+..+.+.|+|++.++.+....++++ ..++
T Consensus 107 p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g---~~~~ 183 (243)
T cd04731 107 PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKG---YDLE 183 (243)
T ss_pred hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCC---CCHH
Confidence 12222333322 3334432 134556888899999999988776544433 4789
Q ss_pred HHHHHHHcCCCCEEEECCCC-cccHHHHHHC-CCCCCceEEEeecccCCCCHHH
Q 010244 446 GLKTVCLASKLPVVAIGGIG-ISNASDVMKI-GVSNLKGVAVVSALFDRECILP 497 (514)
Q Consensus 446 ~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~-Ga~~~~gva~~~~i~~~~~~~~ 497 (514)
.++++++..++||++.|||. ++++.++++. |++ ++.++++++......+
T Consensus 184 ~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~d---gv~vg~al~~~~~~~~ 234 (243)
T cd04731 184 LIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGAD---AALAASIFHFGEYTIA 234 (243)
T ss_pred HHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCC---EEEEeHHHHcCCCCHH
Confidence 99999988899999999995 8999999996 899 9999999996554333
No 153
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.85 E-value=1.6e-08 Score=97.99 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=74.2
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc-----CCCCEEEECCCC
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA-----SKLPVVAIGGIG 465 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~-----~~~pv~a~GGi~ 465 (514)
+..+|+..+....++++|+|.+|+.+|.+.|+|||.+++ .+++.++++.+. -++|+.|.||||
T Consensus 186 v~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn------------~~~e~l~~av~~~~~~~~~i~leAsGGIt 253 (288)
T PRK07428 186 ITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDN------------MPVDLMQQAVQLIRQQNPRVKIEASGNIT 253 (288)
T ss_pred HHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 345666666678999999999999999999999999985 456667776653 378999999999
Q ss_pred cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 466 ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 466 ~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
++|+.++.++|++ +|++++.+++++
T Consensus 254 ~~ni~~ya~tGvD---~Isvgsl~~sa~ 278 (288)
T PRK07428 254 LETIRAVAETGVD---YISSSAPITRSP 278 (288)
T ss_pred HHHHHHHHHcCCC---EEEEchhhhCCC
Confidence 9999999999999 999999887543
No 154
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.82 E-value=6.4e-07 Score=86.22 Aligned_cols=200 Identities=13% Similarity=0.044 Sum_probs=122.9
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHH----HH--------------HHHHHHHHHHhhcCc
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRG----FL--------------EAAKACLQICCVHGV 363 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~----~~--------------~~~~~~~~~~~~~~~ 363 (514)
+-.|+....+. .+...+.+..+.++|+++++|-.+-.++.. .. ...+.+.++.++.++
T Consensus 17 li~yi~aG~P~----~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~ 92 (263)
T CHL00200 17 LIPFITAGDPD----IVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA 92 (263)
T ss_pred EEEEEeCCCCC----HHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC
Confidence 44555543322 256888899999999999999666444210 00 112222333334566
Q ss_pred eEEEcC------------cHHHHHhCCCCeEEeCCCCCCHH----HHHhhcCCCcEEEEecCCHHH-HHHhhhCCCcEEE
Q 010244 364 PLLIND------------RIDIALACDADGVHLGQSDMPAR----TARALLGPDKIIGVSCKTPEE-AHQAWIDGANYIG 426 (514)
Q Consensus 364 ~l~v~~------------~~~~a~~~ga~gvhl~~~~~~~~----~~~~~~~~~~~ig~s~~~~~e-~~~a~~~g~d~v~ 426 (514)
++++.. +++.+.++|++|+-++..-.+.. ...+..+...+.-++-+|++| +....+..-.||.
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 765432 46788899999999876433211 222344556677777777655 4443344333766
Q ss_pred e-ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeeccc---CCCCHHHHHHH
Q 010244 427 C-GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALF---DRECILPESKK 501 (514)
Q Consensus 427 ~-~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~---~~~~~~~~~~~ 501 (514)
+ |..-.|..+...+..-.+.++++++..+.|++.-+||+ ++++.++.+.||+ ||.+||+|. ...++.+..++
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GAD---GvVVGSalv~~i~~~~~~~~~~~ 249 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNIN---GIVIGSACVQILLGSSPEKGLDQ 249 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCC---EEEECHHHHHHHHhcChhhHHHH
Confidence 5 43233333322222234678888887899999999998 9999999999999 999999995 33333333444
Q ss_pred HHHHHHH
Q 010244 502 LHAVLMD 508 (514)
Q Consensus 502 ~~~~~~~ 508 (514)
+.+.+++
T Consensus 250 ~~~~~~~ 256 (263)
T CHL00200 250 LSEFCKV 256 (263)
T ss_pred HHHHHHH
Confidence 4444433
No 155
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.81 E-value=1.4e-07 Score=93.38 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=116.8
Q ss_pred HHHHHHHhCC-CCEEEEEcCCCCHHHHHHHHHHHHHHHh-hcCceEEEc-----CcHHHHHhCCCCeEEeCCCCCCHHHH
Q 010244 322 DAVKAALEGG-ATIIQLREKDADTRGFLEAAKACLQICC-VHGVPLLIN-----DRIDIALACDADGVHLGQSDMPARTA 394 (514)
Q Consensus 322 ~~~~~~~~~G-v~~v~lr~~~~~~~~~~~~~~~~~~~~~-~~~~~l~v~-----~~~~~a~~~ga~gvhl~~~~~~~~~~ 394 (514)
+.+.+..++| +-++-. ...+++++.+.++++++.+. .+++.++.. +.++.+.+.+++.|-+....+ ...+
T Consensus 26 ~la~avs~aGglG~l~~--~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p-~~~i 102 (307)
T TIGR03151 26 SLAAAVSNAGGLGIIGA--GNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNP-GKYI 102 (307)
T ss_pred HHHHHHHhCCCcceecc--ccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCc-HHHH
Confidence 4555666555 555543 33467777777777776543 466766652 234667788999887765443 3355
Q ss_pred HhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHH
Q 010244 395 RALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVM 473 (514)
Q Consensus 395 ~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~ 473 (514)
++....+..+...+.|.++++++.+.|+|+|.+... ....+.+ ....+..++++++.+++||++.|||. .+++..++
T Consensus 103 ~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~-eagGh~g-~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al 180 (307)
T TIGR03151 103 PRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGM-ESGGHIG-ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF 180 (307)
T ss_pred HHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECc-ccCCCCC-CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH
Confidence 555556778888899999999999999999988433 1112211 11247889999988899999999996 67799999
Q ss_pred HCCCCCCceEEEeecccCCC
Q 010244 474 KIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 474 ~~Ga~~~~gva~~~~i~~~~ 493 (514)
.+||+ ||.+|+.|....
T Consensus 181 ~~GA~---gV~iGt~f~~t~ 197 (307)
T TIGR03151 181 ALGAE---AVQMGTRFLCAK 197 (307)
T ss_pred HcCCC---EeecchHHhccc
Confidence 99999 999999998543
No 156
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.81 E-value=1.4e-07 Score=87.61 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=85.4
Q ss_pred CCCcEEE-EecCCHHHHHHhhhCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHH
Q 010244 399 GPDKIIG-VSCKTPEEAHQAWIDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMK 474 (514)
Q Consensus 399 ~~~~~ig-~s~~~~~e~~~a~~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~ 474 (514)
..+..+- +.+.|+.++++..++|+|+|-- +|+- + +......+.++.+++..++||++-|||+ ++++..+++
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIG---s--g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIG---S--GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC---C--CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH
Confidence 4466666 4556899999999999999922 2222 1 1222357899999988899999999996 899999999
Q ss_pred CCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 475 IGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
+|++ ||.++|+|.+++||...+++|+..+++-+
T Consensus 196 lGAd---gVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 196 LGAD---AVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred cCCC---EEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999998753
No 157
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.79 E-value=5.6e-07 Score=87.06 Aligned_cols=174 Identities=20% Similarity=0.196 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCC--
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDM-- 389 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~-- 389 (514)
.+..+.++.+.+.|++.+.+-+-+.+......-...++++.+..++++++.. +.+.+...|+++|.++...+
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~ 109 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN 109 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 3567788888899999999966554322112223344455556678998854 45566778999999987432
Q ss_pred -C-HHHHHhhcCCC-cEEEEecC---------------------CH-HHHHHhhhCCCcEEEeccccCCCCCCCCccCCH
Q 010244 390 -P-ARTARALLGPD-KIIGVSCK---------------------TP-EEAHQAWIDGANYIGCGGVYPTNTKANNLTVGL 444 (514)
Q Consensus 390 -~-~~~~~~~~~~~-~~ig~s~~---------------------~~-~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~ 444 (514)
. ..++...++.+ ..+++.+. ++ +.+.++.+.|+|++++..+....++.+ ..+
T Consensus 110 p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g---~d~ 186 (253)
T PRK02083 110 PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNG---YDL 186 (253)
T ss_pred cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCC---cCH
Confidence 1 22333333322 23344321 33 345778899999999988876555444 368
Q ss_pred HHHHHHHHcCCCCEEEECCCC-cccHHHHHH-CCCCCCceEEEeecccCCCCHHH
Q 010244 445 DGLKTVCLASKLPVVAIGGIG-ISNASDVMK-IGVSNLKGVAVVSALFDRECILP 497 (514)
Q Consensus 445 ~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~-~Ga~~~~gva~~~~i~~~~~~~~ 497 (514)
+.++++++..++||+|.||+. .+++.++++ .|++ |+.++++|..-....+
T Consensus 187 ~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~---gvivg~al~~~~~~~~ 238 (253)
T PRK02083 187 ELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGAD---AALAASIFHFGEITIG 238 (253)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCcc---EEeEhHHHHcCCCCHH
Confidence 999999988899999999997 689999887 5999 9999999985443333
No 158
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.79 E-value=4.4e-07 Score=87.40 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=116.7
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCH---------------------HHHHHHHHHHHHHHhh
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADT---------------------RGFLEAAKACLQICCV 360 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~---------------------~~~~~~~~~~~~~~~~ 360 (514)
+-.|+....+. .+...+.+.++.++|+++++|-.+-.++ ....+. ++++.+.
T Consensus 12 li~y~~aG~P~----~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~---v~~ir~~ 84 (256)
T TIGR00262 12 FIPFVTAGDPT----LETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFEL---LKKVRQK 84 (256)
T ss_pred EEEEEeCCCCC----HHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHH---HHHHHhc
Confidence 44555543322 2567888999999999999996654332 222222 3333333
Q ss_pred -cCceEEE----c--------CcHHHHHhCCCCeEEeCCCCCCH--HHHH--hhcCCCcEEEEecCCH-HHHHHhhhCCC
Q 010244 361 -HGVPLLI----N--------DRIDIALACDADGVHLGQSDMPA--RTAR--ALLGPDKIIGVSCKTP-EEAHQAWIDGA 422 (514)
Q Consensus 361 -~~~~l~v----~--------~~~~~a~~~ga~gvhl~~~~~~~--~~~~--~~~~~~~~ig~s~~~~-~e~~~a~~~g~ 422 (514)
.+.+++. | .+++.+.++|++|+-++....+. .... +..+...++-++-+|+ +.+....+..-
T Consensus 85 ~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 85 HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 3555432 1 24668889999999887543211 1112 2233344444555554 44444333322
Q ss_pred cEEEecccc-CCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC-----CCH
Q 010244 423 NYIGCGGVY-PTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR-----ECI 495 (514)
Q Consensus 423 d~v~~~~vf-~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~-----~~~ 495 (514)
.||.+..+. -|..+......-.+.++++++..+.||++-|||+ ++++..+.++||+ |+.+||+|++. .++
T Consensus 165 gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GAD---gvVvGSaiv~~~~~~~~~~ 241 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGAD---GVIVGSAIVKIIEENLNTP 241 (256)
T ss_pred CCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCC---EEEECHHHHHHHHhccCCH
Confidence 244443332 2323322333356889999988889999999997 9999999999999 99999999841 144
Q ss_pred HHHHHHHHHHH
Q 010244 496 LPESKKLHAVL 506 (514)
Q Consensus 496 ~~~~~~~~~~~ 506 (514)
.+..+.+.+.+
T Consensus 242 ~~~~~~i~~~~ 252 (256)
T TIGR00262 242 EKMLQALEEFV 252 (256)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 159
>PRK08227 autoinducer 2 aldolase; Validated
Probab=98.79 E-value=1.9e-07 Score=89.20 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=109.2
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHH--HHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRG--FLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
.+.-.++.+++.|++.|-+..+-.+..| .++.+.++.+.|+++|.+++. -++ .|-.+. + +
T Consensus 95 ~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~p--------rG~~~~--~-~------ 156 (264)
T PRK08227 95 AVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTA--------VGKDMV--R-D------ 156 (264)
T ss_pred cceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-Eec--------CCCCcC--c-h------
Confidence 3444588899999999988887666544 344456677889999999886 211 011110 0 0
Q ss_pred hcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcc------cHH
Q 010244 397 LLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGIS------NAS 470 (514)
Q Consensus 397 ~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~------~~~ 470 (514)
++.+ ..-++.|.++|||+| ++.+| + +.|+++.+.+++||+..||-..+ .+.
T Consensus 157 ---~~~i-------a~aaRiaaELGADiV---K~~y~---------~-~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~ 213 (264)
T PRK08227 157 ---ARYF-------SLATRIAAEMGAQII---KTYYV---------E-EGFERITAGCPVPIVIAGGKKLPERDALEMCY 213 (264)
T ss_pred ---HHHH-------HHHHHHHHHHcCCEE---ecCCC---------H-HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHH
Confidence 0101 234788999999999 66653 3 78899999889999999999742 356
Q ss_pred HHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 471 DVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
+.+++|+. |+++|+.+||.+||.+.++++..++++.
T Consensus 214 ~ai~aGa~---Gv~~GRNIfQ~~~p~~~~~al~~IVh~~ 249 (264)
T PRK08227 214 QAIDEGAS---GVDMGRNIFQSEHPVAMIKAVHAVVHEN 249 (264)
T ss_pred HHHHcCCc---eeeechhhhccCCHHHHHHHHHHHHhCC
Confidence 78889999 9999999999999999999999998764
No 160
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.79 E-value=4.9e-07 Score=86.61 Aligned_cols=170 Identities=22% Similarity=0.186 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCC----CHHHHH--------------HHHHHHHHHHhhcCceEEE----c-------
Q 010244 318 RSITDAVKAALEGGATIIQLREKDA----DTRGFL--------------EAAKACLQICCVHGVPLLI----N------- 368 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~----~~~~~~--------------~~~~~~~~~~~~~~~~l~v----~------- 368 (514)
+.+.+.++++.++|++++++-.+.. +..... ...+.+..+.+..+.++.+ |
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~ 93 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGL 93 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCH
Confidence 4678888899999999999974332 211111 1122223333333455444 2
Q ss_pred -CcHHHHHhCCCCeEEeCCCCCCH--HHHHhh--cCCCcEEEEecCCHH-HHHHhhhCCCcEEEeccccCCCCCC-CCcc
Q 010244 369 -DRIDIALACDADGVHLGQSDMPA--RTARAL--LGPDKIIGVSCKTPE-EAHQAWIDGANYIGCGGVYPTNTKA-NNLT 441 (514)
Q Consensus 369 -~~~~~a~~~ga~gvhl~~~~~~~--~~~~~~--~~~~~~ig~s~~~~~-e~~~a~~~g~d~v~~~~vf~t~~k~-~~~~ 441 (514)
..++.+.++|++|+.++.-..+. ...+.+ .+....+.++..|+. .++...+...|+|.+-.+.++.... ....
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~ 173 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPD 173 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCCh
Confidence 13667889999999996433211 112222 233445556666654 4565555467776664444432211 1222
Q ss_pred CCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 442 VGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 442 ~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
...+.++++++..++|++.-|||+ ++++..+.++ |+ |+.+||+|++
T Consensus 174 ~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~-AD---gvVvGSaiv~ 220 (242)
T cd04724 174 DLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY-AD---GVIVGSALVK 220 (242)
T ss_pred hHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc-CC---EEEECHHHHH
Confidence 345888999987899999999999 6699999999 99 9999999983
No 161
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.78 E-value=1.7e-07 Score=87.11 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=86.1
Q ss_pred hcCCCcEEE-EecCCHHHHHHhhhCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHH
Q 010244 397 LLGPDKIIG-VSCKTPEEAHQAWIDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDV 472 (514)
Q Consensus 397 ~~~~~~~ig-~s~~~~~e~~~a~~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~ 472 (514)
....+..+- +-+.|+.++++..++|+|+|-- +|+- + +......+.++.+++..++||++-|||+ ++++.++
T Consensus 119 L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIG---s--g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~A 193 (250)
T PRK00208 119 LVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIG---S--GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQA 193 (250)
T ss_pred HHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC---C--CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHH
Confidence 334466666 4556899999999999999922 2222 1 1222347889999887899999999996 8999999
Q ss_pred HHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 473 MKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
+++|++ ||.++|+|.+++||...+++|+..+.+-+
T Consensus 194 melGAd---gVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 194 MELGAD---AVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHcCCC---EEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999998754
No 162
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=98.76 E-value=1.1e-08 Score=94.32 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCC----HHHHHHHHHHHHHHH-hhcCceEEEcC---cHHHHHhCCCCeE--EeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDAD----TRGFLEAAKACLQIC-CVHGVPLLIND---RIDIALACDADGV--HLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~----~~~~~~~~~~~~~~~-~~~~~~l~v~~---~~~~a~~~ga~gv--hl~~~ 387 (514)
..+.+.++++.+.|++++++-.-+.. -.--.+.++.+++.+ ...++++++.+ +++...++|++.+ |....
T Consensus 12 ~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~ 91 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEAT 91 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGT
T ss_pred HHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccch
Confidence 46788899999999999999543221 111123444555443 23567888865 4566778899966 55544
Q ss_pred CCCHHHHHhhcCCCcEEEEecC--CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEE
Q 010244 388 DMPARTARALLGPDKIIGVSCK--TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVA 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~--~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a 460 (514)
......++..+..+...|+... |+-|..+-+-.-+|+|.+..+-|...-+..-+.-++.++++++.. +..+.+
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4444555666667888887665 544433334345999999999886655544445667777776543 588999
Q ss_pred ECCCCcccHHHHHHCCCCCCceEEEeecccCC
Q 010244 461 IGGIGISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 461 ~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
-|||+.+|+..+.++|++ .+.+||++|++
T Consensus 172 DGGI~~~~~~~~~~aGad---~~V~Gs~iF~~ 200 (201)
T PF00834_consen 172 DGGINEENIKQLVEAGAD---IFVAGSAIFKA 200 (201)
T ss_dssp ESSESTTTHHHHHHHT-----EEEESHHHHTS
T ss_pred ECCCCHHHHHHHHHcCCC---EEEECHHHhCC
Confidence 999999999999999999 99999999975
No 163
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.76 E-value=4.7e-07 Score=86.59 Aligned_cols=166 Identities=22% Similarity=0.309 Sum_probs=114.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCH---HHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCC
Q 010244 319 SITDAVKAALEGGATIIQLREKDADT---RGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~ 389 (514)
+..+.++.+.+.|++.+.+-+-+... ......++ ++++..+.++++.+ +.+.+.+.|||.|-++...+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~---~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIE---EIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHH---HHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 45677777878999999985432221 11123333 44445578888854 45666789999998887543
Q ss_pred C----HHHHHhhcCC-CcEEEEe---------------cCCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHH
Q 010244 390 P----ARTARALLGP-DKIIGVS---------------CKTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLK 448 (514)
Q Consensus 390 ~----~~~~~~~~~~-~~~ig~s---------------~~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~ 448 (514)
. ..++.+.++. ..++... -.++.| +....+.|+|++++..+..+.++.+ ..++.++
T Consensus 107 ~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g---~~~~~i~ 183 (234)
T cd04732 107 KNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG---PNFELYK 183 (234)
T ss_pred hChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC---CCHHHHH
Confidence 2 2233333333 2233322 335555 4446688999999988877666544 4689999
Q ss_pred HHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 449 TVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 449 ~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
++++..++||++.|||. .+++.++++.|++ |+.++++++...
T Consensus 184 ~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~---gv~vg~~~~~~~ 226 (234)
T cd04732 184 ELAAATGIPVIASGGVSSLDDIKALKELGVA---GVIVGKALYEGK 226 (234)
T ss_pred HHHHhcCCCEEEecCCCCHHHHHHHHHCCCC---EEEEeHHHHcCC
Confidence 99998899999999997 6789999999999 999999999654
No 164
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=98.75 E-value=2.1e-07 Score=87.38 Aligned_cols=153 Identities=22% Similarity=0.246 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcC--CCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCC-CCCHHHH
Q 010244 318 RSITDAVKAALEGGATIIQLREK--DADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQS-DMPARTA 394 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~--~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~-~~~~~~~ 394 (514)
..+.-.++.++..|++.+-+..+ +.++.+.++.+.++.+.|+++|.+++..-++. |-++... +.....
T Consensus 97 ~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpR--------g~~~~~~~~~d~~~- 167 (265)
T COG1830 97 QVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPR--------GPAIKDEYHRDADL- 167 (265)
T ss_pred ceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEecc--------CCcccccccccHHH-
Confidence 34555688899999887777665 44455566667778889999999999866542 1122111 001001
Q ss_pred HhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCccc------
Q 010244 395 RALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISN------ 468 (514)
Q Consensus 395 ~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~------ 468 (514)
.-.-++.+.++|||+| ++.+|.+ .+.|+++.+.+++||+..||-+.+.
T Consensus 168 ---------------v~~aaRlaaelGADIi---K~~ytg~--------~e~F~~vv~~~~vpVviaGG~k~~~~~~~l~ 221 (265)
T COG1830 168 ---------------VGYAARLAAELGADII---KTKYTGD--------PESFRRVVAACGVPVVIAGGPKTETEREFLE 221 (265)
T ss_pred ---------------HHHHHHHHHHhcCCeE---eecCCCC--------hHHHHHHHHhCCCCEEEeCCCCCCChHHHHH
Confidence 1223668889999999 7776543 4889999998999999999997633
Q ss_pred -HHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 469 -ASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 469 -~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
...++++|+. |+++|+.+||.++|...++++..++.+
T Consensus 222 ~~~~ai~aGa~---G~~~GRNifQ~~~p~~m~~Ai~~Ivhe 259 (265)
T COG1830 222 MVTAAIEAGAM---GVAVGRNIFQHEDPEAMVKAIQAIVHE 259 (265)
T ss_pred HHHHHHHccCc---chhhhhhhhccCChHHHHHHHHHHhcC
Confidence 4667888999 999999999999999999999988875
No 165
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.75 E-value=5.2e-07 Score=86.14 Aligned_cols=165 Identities=24% Similarity=0.275 Sum_probs=112.0
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC--
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP-- 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~-- 390 (514)
+..+.++..-+.|++.+++.+-+......-.-...++++++..+.++++.+ +++.+...|++++-++...+.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~ 110 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENP 110 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence 456777778788999888866433311100111223445555678888854 344556789999998875432
Q ss_pred --HHHHHhhcCCC-cEEEEecC---------------------C-HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHH
Q 010244 391 --ARTARALLGPD-KIIGVSCK---------------------T-PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLD 445 (514)
Q Consensus 391 --~~~~~~~~~~~-~~ig~s~~---------------------~-~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~ 445 (514)
..++.+.++.. .++.+.+. + .+.++.+.+.|+|++.++.+....+.++ ..++
T Consensus 111 ~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g---~~~~ 187 (232)
T TIGR03572 111 DLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG---YDLE 187 (232)
T ss_pred HHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC---CCHH
Confidence 12233333222 23333321 1 4556788899999999999877665444 4689
Q ss_pred HHHHHHHcCCCCEEEECCCC-cccHHH-HHHCCCCCCceEEEeecc
Q 010244 446 GLKTVCLASKLPVVAIGGIG-ISNASD-VMKIGVSNLKGVAVVSAL 489 (514)
Q Consensus 446 ~l~~~~~~~~~pv~a~GGi~-~~~~~~-~~~~Ga~~~~gva~~~~i 489 (514)
.++++++..++||++.|||+ .+++.+ +.+.|++ ||+++++|
T Consensus 188 ~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gad---gV~vg~a~ 230 (232)
T TIGR03572 188 LIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGAS---AVAAASLF 230 (232)
T ss_pred HHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCC---EEEEehhh
Confidence 99999998899999999997 788888 7789999 99999987
No 166
>PRK04302 triosephosphate isomerase; Provisional
Probab=98.67 E-value=4.3e-07 Score=86.00 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=94.9
Q ss_pred HHHHHhCCCCeEEeCCC--CCCH----HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEecccc--CCCCCC-CCcc
Q 010244 371 IDIALACDADGVHLGQS--DMPA----RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVY--PTNTKA-NNLT 441 (514)
Q Consensus 371 ~~~a~~~ga~gvhl~~~--~~~~----~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf--~t~~k~-~~~~ 441 (514)
++.+.++|++++-++.. .++. ..++.....+..+...+++.+++..+.+.+.|||.+.|+. .|.++. ...+
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~ 157 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKP 157 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCH
Confidence 56677889999988764 2222 2233334457767788999999999999999999988853 222211 1222
Q ss_pred CCH-HHHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHH
Q 010244 442 VGL-DGLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAV 505 (514)
Q Consensus 442 ~g~-~~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~ 505 (514)
.+. +.++.+++.. ++||++-|||+ ++++..+++.|++ |+.+||++++.+||.+.+++|.+.
T Consensus 158 ~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gad---GvlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 158 EVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGAD---GVLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCC---EEEEehHHhCCcCHHHHHHHHHhh
Confidence 233 2334445433 79999999995 7788888999999 999999999999999999888764
No 167
>PRK06852 aldolase; Validated
Probab=98.65 E-value=7.4e-07 Score=86.65 Aligned_cols=155 Identities=15% Similarity=0.111 Sum_probs=110.5
Q ss_pred HHHHHHHHhCC------CCEEEEEcCCCCHHH--HHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHH
Q 010244 321 TDAVKAALEGG------ATIIQLREKDADTRG--FLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPAR 392 (514)
Q Consensus 321 ~~~~~~~~~~G------v~~v~lr~~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~ 392 (514)
.-.++.+++.| ++.|-+...-.+..| .++.+.++.+.|+++|.++++.-++. |-.+.... ...
T Consensus 118 ~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~ypr--------G~~i~~~~-~~~ 188 (304)
T PRK06852 118 LLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPR--------GKAVKDEK-DPH 188 (304)
T ss_pred eecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeecc--------CcccCCCc-cHH
Confidence 33477888877 778888777555444 34445667788999999998865443 11221111 111
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcc----
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGIS---- 467 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~---- 467 (514)
.+ ..-++.|.++|||+| ++.+|..+.+ ...+.|+++...+ ++||+..||-..+
T Consensus 189 ~i----------------a~aaRiaaELGADIV---Kv~y~~~~~~---g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~ 246 (304)
T PRK06852 189 LI----------------AGAAGVAACLGADFV---KVNYPKKEGA---NPAELFKEAVLAAGRTKVVCAGGSSTDPEEF 246 (304)
T ss_pred HH----------------HHHHHHHHHHcCCEE---EecCCCcCCC---CCHHHHHHHHHhCCCCcEEEeCCCCCCHHHH
Confidence 11 223688899999999 8777643221 2368899999888 9999999999743
Q ss_pred --cHHHHHH-CCCCCCceEEEeecccCCCCH--HHHHHHHHHHHHHH
Q 010244 468 --NASDVMK-IGVSNLKGVAVVSALFDRECI--LPESKKLHAVLMDA 509 (514)
Q Consensus 468 --~~~~~~~-~Ga~~~~gva~~~~i~~~~~~--~~~~~~~~~~~~~~ 509 (514)
.+.+.++ .|+. |+++|+.+||.++| .+.++++..++++.
T Consensus 247 L~~v~~ai~~aGa~---Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~ 290 (304)
T PRK06852 247 LKQLYEQIHISGAS---GNATGRNIHQKPLDEAVRMCNAIYAITVED 290 (304)
T ss_pred HHHHHHHHHHcCCc---eeeechhhhcCCCchHHHHHHHHHHHHhCC
Confidence 2456767 8999 99999999999988 99999999988753
No 168
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.62 E-value=1.7e-06 Score=82.70 Aligned_cols=165 Identities=21% Similarity=0.289 Sum_probs=111.8
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHH---HHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCC
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTR---GFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~---~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~ 389 (514)
+..+.++...+.|++.+++-+-+.... ...+. +..+++..+.++++.+ +++.+.+.||++|.++...+
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~---i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l 107 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLEL---IEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAV 107 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHH---HHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence 566777788889999999977432211 12333 3344445577888754 56667889999999988553
Q ss_pred C----HHHHHhhcCCCcEEEEec---------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHH
Q 010244 390 P----ARTARALLGPDKIIGVSC---------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKT 449 (514)
Q Consensus 390 ~----~~~~~~~~~~~~~ig~s~---------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~ 449 (514)
. ..++.+.++....++.++ .++.| +....+.|+|.+++..+-...+. ....++.+++
T Consensus 108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~---~G~d~~~i~~ 184 (233)
T PRK00748 108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTL---SGPNVEATRE 184 (233)
T ss_pred hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCc---CCCCHHHHHH
Confidence 2 222223333334444443 24455 45555779998877654433222 2246899999
Q ss_pred HHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEeecccCC
Q 010244 450 VCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVSALFDR 492 (514)
Q Consensus 450 ~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~~i~~~ 492 (514)
+++..++|+++.|||. ++++.++++.| ++ ||.++++++..
T Consensus 185 l~~~~~ipvia~GGi~~~~di~~~~~~g~~~---gv~vg~a~~~~ 226 (233)
T PRK00748 185 LAAAVPIPVIASGGVSSLDDIKALKGLGAVE---GVIVGRALYEG 226 (233)
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHcCCcc---EEEEEHHHHcC
Confidence 9998899999999996 79999999988 99 99999999854
No 169
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.61 E-value=3.1e-06 Score=81.27 Aligned_cols=180 Identities=16% Similarity=0.086 Sum_probs=109.7
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHH----HHHH---HH------HHHHHHHhhcCceEEEc
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTR----GFLE---AA------KACLQICCVHGVPLLIN 368 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~----~~~~---~~------~~~~~~~~~~~~~l~v~ 368 (514)
+-.|+....+. .++..+.++.+.++ ++.++|-.+-.++. .+.+ .+ +.+..+.+..+.++.+.
T Consensus 6 ~i~y~~~G~p~----~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM 80 (244)
T PRK13125 6 LVVYLTAGYPN----VESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILM 80 (244)
T ss_pred eEEEEeCCCCC----HHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEE
Confidence 34455544322 24677777777666 99999977655431 1111 11 13334443445665431
Q ss_pred --------C---cHHHHHhCCCCeEEeCCCC-----CCHHHHHhhcCCCcEEEEecC--C-HHHHHHhhhCCCcEEEecc
Q 010244 369 --------D---RIDIALACDADGVHLGQSD-----MPARTARALLGPDKIIGVSCK--T-PEEAHQAWIDGANYIGCGG 429 (514)
Q Consensus 369 --------~---~~~~a~~~ga~gvhl~~~~-----~~~~~~~~~~~~~~~ig~s~~--~-~~e~~~a~~~g~d~v~~~~ 429 (514)
+ .++.+.+.|++++.++... ......+.....+..++.-++ | .+++....+..-.++.. .
T Consensus 81 ~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-s 159 (244)
T PRK13125 81 TYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-G 159 (244)
T ss_pred EecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-E
Confidence 2 2557889999999886321 111222333344555555454 5 55666666665555544 4
Q ss_pred ccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccC
Q 010244 430 VYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 430 vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
+.|+... ....--.+.++++++.. +.|+++-||| +++++..++++||+ |+.+||+|++
T Consensus 160 v~~~~g~-~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD---~vvvGSai~~ 219 (244)
T PRK13125 160 LRPATGV-PLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGAD---GVVVGTAFIE 219 (244)
T ss_pred eCCCCCC-CchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCC---EEEECHHHHH
Confidence 5544322 22222346788888776 5899999999 89999999999999 9999999995
No 170
>PLN02591 tryptophan synthase
Probab=98.61 E-value=9.1e-06 Score=77.56 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHH---HH---------------HHHHHHHHHHhhcCceEEEcC----------
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRG---FL---------------EAAKACLQICCVHGVPLLIND---------- 369 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~l~v~~---------- 369 (514)
+...+.+..+.++|+++++|-.+-.++-. .+ +..+.++++.++..+++++..
T Consensus 16 e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~ 95 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGI 95 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHH
Confidence 56788899999999999999766544210 00 112222333334566765532
Q ss_pred --cHHHHHhCCCCeEEeCCCCCCHHHH------HhhcCCCcEEEEecCCH-HHHHHhhhCCCcEEEe-ccccCCCCCCCC
Q 010244 370 --RIDIALACDADGVHLGQSDMPARTA------RALLGPDKIIGVSCKTP-EEAHQAWIDGANYIGC-GGVYPTNTKANN 439 (514)
Q Consensus 370 --~~~~a~~~ga~gvhl~~~~~~~~~~------~~~~~~~~~ig~s~~~~-~e~~~a~~~g~d~v~~-~~vf~t~~k~~~ 439 (514)
.++.+.++|++|+-++. ++.++. .+..+...+.-++-+|. +.++...+..-+||-+ |..-.|.++.+.
T Consensus 96 ~~F~~~~~~aGv~GviipD--LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~ 173 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPD--LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASV 173 (250)
T ss_pred HHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCC
Confidence 46778899999999984 443322 22334455555555554 4456655666666654 333334333332
Q ss_pred ccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 440 LTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
+..-.+.++++++..++||+.=-||+ ++++.++++.||+ |+.+||+|.+
T Consensus 174 ~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GAD---GvIVGSalVk 223 (250)
T PLN02591 174 SGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGAD---GVIVGSAMVK 223 (250)
T ss_pred chhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCC---EEEECHHHHH
Confidence 32234568888887899999999998 9999999999999 9999999964
No 171
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.59 E-value=4.7e-06 Score=80.60 Aligned_cols=169 Identities=21% Similarity=0.210 Sum_probs=116.2
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC--
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP-- 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~-- 390 (514)
+..+.++...+.|++.+++-+-+............+.++++..++++++.. +++.+...|++++-++.....
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p 110 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNP 110 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhCh
Confidence 566788888889999999977654422222223344556666678888743 556677899999998874321
Q ss_pred --HHHHHhhcCC-CcEEEEecC-----------------------CH-HHHHHhhhCCCcEEEeccccCCCCCCCCccCC
Q 010244 391 --ARTARALLGP-DKIIGVSCK-----------------------TP-EEAHQAWIDGANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 391 --~~~~~~~~~~-~~~ig~s~~-----------------------~~-~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g 443 (514)
..++...++. ...+++.+. +. +-+....+.|+|.+.++.+-.-.+ .+...
T Consensus 111 ~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~---~~g~~ 187 (254)
T TIGR00735 111 ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT---KSGYD 187 (254)
T ss_pred HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC---CCCCC
Confidence 1233333332 334455421 22 335677789999998876433222 23456
Q ss_pred HHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEeecccCCC
Q 010244 444 LDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVSALFDRE 493 (514)
Q Consensus 444 ~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~~i~~~~ 493 (514)
++.++++++..++||++.|||. ++++.++++.| ++ ||.++++|+...
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~d---gv~~g~a~~~~~ 236 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKAD---AALAASVFHYRE 236 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcc---eeeEhHHHhCCC
Confidence 8999999998899999999997 78999999988 88 999999998544
No 172
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.54 E-value=2.9e-06 Score=80.86 Aligned_cols=172 Identities=22% Similarity=0.169 Sum_probs=115.1
Q ss_pred CHHHHHHHHHhCCCCEEEE-EcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCCH
Q 010244 319 SITDAVKAALEGGATIIQL-REKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~l-r~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
+..+......++|+..+-+ +++..=.-.+. -+..+.+..+.+++-.| ++..|..+|||.|-|-..-+..
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~----dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~ 144 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEPKFFGGSLE----DLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSD 144 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--SCCCHHHHH----HHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCCCCHH----HHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCH
Confidence 5677888888899887765 44433322222 23334445567776554 3567889999999886665554
Q ss_pred HHH----HhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC
Q 010244 392 RTA----RALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG 465 (514)
Q Consensus 392 ~~~----~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~ 465 (514)
... ......++-+-+-+||.+|+..|.+.|++.|++-.--- + .-...++...++...+ ++-+++.+||+
T Consensus 145 ~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL---~--tf~vd~~~~~~l~~~ip~~~~~iseSGI~ 219 (254)
T PF00218_consen 145 DQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDL---K--TFEVDLNRTEELAPLIPKDVIVISESGIK 219 (254)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCT---T--TCCBHTHHHHHHHCHSHTTSEEEEESS-S
T ss_pred HHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccc---c--CcccChHHHHHHHhhCccceeEEeecCCC
Confidence 332 22334577777789999999999999999997643110 0 0113456666666655 57899999997
Q ss_pred -cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHH
Q 010244 466 -ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKL 502 (514)
Q Consensus 466 -~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~ 502 (514)
++++..+.++|++ ||-+|++||.++||.+.+++|
T Consensus 220 ~~~d~~~l~~~G~d---avLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 220 TPEDARRLARAGAD---AVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp SHHHHHHHCTTT-S---EEEESHHHHTSSSHHHHHHHH
T ss_pred CHHHHHHHHHCCCC---EEEECHHHhCCCCHHHHHhcC
Confidence 8999999999999 999999999999999988875
No 173
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.48 E-value=1.2e-05 Score=76.03 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=116.5
Q ss_pred CHHHHHHHHHhCCCCEEEE-EcC---CCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCC
Q 010244 319 SITDAVKAALEGGATIIQL-REK---DADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSD 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~l-r~~---~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~ 388 (514)
+..+++....++|+..+-+ +++ ..+.+.+ .........+++-.| ++..+..+|||.|-|-...
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l-------~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDL-------KSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHH-------HHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 4567777888899877754 433 3333322 222233456776654 4567888999999776666
Q ss_pred CCHHHH----HhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEEC
Q 010244 389 MPARTA----RALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIG 462 (514)
Q Consensus 389 ~~~~~~----~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~G 462 (514)
+..... ......++-+-+-+||.+|+..|.+.|++.|++-. .+-+ .-...++...++...+ +..+++.+
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn---RdL~--t~~vd~~~~~~L~~~ip~~~~~IsES 209 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT---RDLD--TFQIHQNLVEEVAAFLPPNIVKVGES 209 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC---CCCc--cceECHHHHHHHHhhCCCCcEEEEcC
Confidence 554322 23334566666779999999999999999996532 1111 1123566666676665 56789999
Q ss_pred CCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHH
Q 010244 463 GIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKL 502 (514)
Q Consensus 463 Gi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~ 502 (514)
||+ ++++..+.+. ++ ||-+|+++|.++||.+.+++|
T Consensus 210 GI~t~~d~~~l~~~-~d---avLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 210 GIESRSDLDKFRKL-VD---AALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred CCCCHHHHHHHHHh-CC---EEEECHHHhCCCCHHHHHHHh
Confidence 996 7899998886 99 999999999999999888765
No 174
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.40 E-value=1.4e-05 Score=77.32 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=112.9
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC--
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP-- 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~-- 390 (514)
+..+.++...+.|++.+++.+=+......-.-...+.++++..+.++++.+ +.+.....|++++-++.....
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~ 110 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDP 110 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence 567788888899999999977544421111122334455556678888753 344456789999998874322
Q ss_pred --HHHHHhhcCC-CcEEEEec--------------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHH
Q 010244 391 --ARTARALLGP-DKIIGVSC--------------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDG 446 (514)
Q Consensus 391 --~~~~~~~~~~-~~~ig~s~--------------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~ 446 (514)
..++...++. ...+++.+ .++.| +..+.+.|++.+++..+-...+.. ...++.
T Consensus 111 ~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~---G~d~~~ 187 (258)
T PRK01033 111 DLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMK---GYDLEL 187 (258)
T ss_pred HHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcC---CCCHHH
Confidence 1222222321 12222221 13444 566779999999887665433332 347999
Q ss_pred HHHHHHcCCCCEEEECCCC-cccHHHHH-HCCCCCCceEEEeecccCC
Q 010244 447 LKTVCLASKLPVVAIGGIG-ISNASDVM-KIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 447 l~~~~~~~~~pv~a~GGi~-~~~~~~~~-~~Ga~~~~gva~~~~i~~~ 492 (514)
++++++..++||+|.|||. .+++.+++ +.|++ |+.++++|.-.
T Consensus 188 i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~Gvd---gVivg~a~~~~ 232 (258)
T PRK01033 188 LKSFRNALKIPLIALGGAGSLDDIVEAILNLGAD---AAAAGSLFVFK 232 (258)
T ss_pred HHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCC---EEEEcceeeeC
Confidence 9999998899999999997 69999998 79999 99999999744
No 175
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.40 E-value=1.4e-05 Score=76.14 Aligned_cols=168 Identities=24% Similarity=0.292 Sum_probs=109.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC--
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP-- 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~-- 390 (514)
+..+.++...+.|++.+++=+-+............+.++++..+.++++.+ +++.+.+.|++.+-++...+.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~ 108 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENP 108 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCH
Confidence 456677777788998888844433321111111223344444567888743 466788899999988754322
Q ss_pred --HHHHHhhcCCC-cEEEEe-------c--------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHH
Q 010244 391 --ARTARALLGPD-KIIGVS-------C--------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVC 451 (514)
Q Consensus 391 --~~~~~~~~~~~-~~ig~s-------~--------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~ 451 (514)
..++.+.++.. ..+... + -++.+ ++.+.+.|+|.+.+..+-...+. ....++.+++++
T Consensus 109 ~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~---~g~~~~~i~~i~ 185 (230)
T TIGR00007 109 DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTL---SGPNFELTKELV 185 (230)
T ss_pred HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCc---CCCCHHHHHHHH
Confidence 22233333322 333222 1 23333 56677899998877655443322 234689999999
Q ss_pred HcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 452 LASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 452 ~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+..++|+++-|||. .+++..+++.|++ ||.++++++..
T Consensus 186 ~~~~ipvia~GGi~~~~di~~~~~~Gad---gv~ig~a~~~~ 224 (230)
T TIGR00007 186 KAVNVPVIASGGVSSIDDLIALKKLGVY---GVIVGKALYEG 224 (230)
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHCCCC---EEEEeHHHHcC
Confidence 88899999999996 7899999999999 99999999854
No 176
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.39 E-value=4.2e-05 Score=72.77 Aligned_cols=176 Identities=22% Similarity=0.188 Sum_probs=112.3
Q ss_pred HHHHHHHhCCCCEEEEEcC-------CCCHHHHHHHHHHHHHHHhh----cCceEEEcCc---HHHHHhCCCCeEEeC--
Q 010244 322 DAVKAALEGGATIIQLREK-------DADTRGFLEAAKACLQICCV----HGVPLLINDR---IDIALACDADGVHLG-- 385 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~-------~~~~~~~~~~~~~~~~~~~~----~~~~l~v~~~---~~~a~~~ga~gvhl~-- 385 (514)
+-++.+.++|++.+++-.- ..+++.......-..++.+. +|+.++-|+. +.+|.+.|+++|-+.
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~ 112 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVF 112 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCE
Confidence 3344566889999999552 22334333333333344444 4556666664 456788899987422
Q ss_pred ------CCC---C---CHHHHHhhcCCCcEEEEecC----------CHHHHH-Hh-hhCCCcEEEeccccCCCCCCCCcc
Q 010244 386 ------QSD---M---PARTARALLGPDKIIGVSCK----------TPEEAH-QA-WIDGANYIGCGGVYPTNTKANNLT 441 (514)
Q Consensus 386 ------~~~---~---~~~~~~~~~~~~~~ig~s~~----------~~~e~~-~a-~~~g~d~v~~~~vf~t~~k~~~~~ 441 (514)
... . .....|+.++.+..+-+.++ +++|.. .+ ...++|.++++---. ..+
T Consensus 113 ~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T------G~~ 186 (254)
T PF03437_consen 113 VGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT------GEP 186 (254)
T ss_pred EceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc------CCC
Confidence 211 1 12234444455554444332 455543 34 467899998865221 123
Q ss_pred CCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCC---CH--HHHHHHHHHHHH
Q 010244 442 VGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRE---CI--LPESKKLHAVLM 507 (514)
Q Consensus 442 ~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~---~~--~~~~~~~~~~~~ 507 (514)
..++.++++++..++||+.-+|+|++|+.++++. |+ |+.+||.|-... +| .+++++|.+.++
T Consensus 187 ~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~-AD---G~IVGS~~K~~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 187 PDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY-AD---GAIVGSYFKKDGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred CCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh-CC---EEEEeeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence 4688999999988999999999999999999987 89 999999997533 22 566777776654
No 177
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.37 E-value=1.5e-05 Score=80.85 Aligned_cols=120 Identities=16% Similarity=0.194 Sum_probs=81.0
Q ss_pred cHHHHHhCCCCeEEeCCCCCC-------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEecc----ccCCCCCCC
Q 010244 370 RIDIALACDADGVHLGQSDMP-------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGG----VYPTNTKAN 438 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~-------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~----vf~t~~k~~ 438 (514)
.++...+.|+|.|-+...+.. +..+++.++.-.++...+.|+++++.+.++|+|+|.+|- +.-|....+
T Consensus 157 ~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g 236 (404)
T PRK06843 157 RVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAG 236 (404)
T ss_pred HHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecC
Confidence 456667889998875433321 224444443233556689999999999999999997652 111111111
Q ss_pred CccCCHHHH---HHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 439 NLTVGLDGL---KTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 439 ~~~~g~~~l---~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
.....+..+ .++++..++||+|.|||. +.++..++.+||+ +|.+|+.|...
T Consensus 237 ~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~---aVmvGs~~agt 291 (404)
T PRK06843 237 VGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGAD---SVMIGNLFAGT 291 (404)
T ss_pred CCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCC---EEEEcceeeee
Confidence 111223334 444444589999999995 8999999999999 99999999864
No 178
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.37 E-value=4.4e-06 Score=83.88 Aligned_cols=118 Identities=25% Similarity=0.312 Sum_probs=81.2
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccC--CHHHHH
Q 010244 371 IDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTV--GLDGLK 448 (514)
Q Consensus 371 ~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~--g~~~l~ 448 (514)
++.+.+.+.+.|.+....++...++.....+..+...+.|+++++++.+.|+|.|++=.. ..--|.+ ... -+..+.
T Consensus 106 ~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~-eAGGH~g-~~~~~~~~L~~ 183 (330)
T PF03060_consen 106 LDVALEAKPDVVSFGFGLPPPEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGP-EAGGHRG-FEVGSTFSLLP 183 (330)
T ss_dssp HHHHHHS--SEEEEESSSC-HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-T-TSSEE----SSG-HHHHHH
T ss_pred cccccccceEEEEeecccchHHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEecc-ccCCCCC-ccccceeeHHH
Confidence 444455566688887777756667777778899999999999999999999999987221 1111222 112 256778
Q ss_pred HHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 449 TVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 449 ~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
++++..++||+|.|||. .+.+..++.+||+ ||.+|+.|+..+
T Consensus 184 ~v~~~~~iPViaAGGI~dg~~iaaal~lGA~---gV~~GTrFl~t~ 226 (330)
T PF03060_consen 184 QVRDAVDIPVIAAGGIADGRGIAAALALGAD---GVQMGTRFLATE 226 (330)
T ss_dssp HHHHH-SS-EEEESS--SHHHHHHHHHCT-S---EEEESHHHHTST
T ss_pred HHhhhcCCcEEEecCcCCHHHHHHHHHcCCC---EeecCCeEEecc
Confidence 88888899999999995 6789999999999 999999998543
No 179
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.36 E-value=2.6e-05 Score=74.70 Aligned_cols=171 Identities=24% Similarity=0.297 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCCC---
Q 010244 320 ITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDMP--- 390 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~~--- 390 (514)
..+.++...+.|++.+++=+=+... ........++++++..+.++.+. ++++.+..+||+.+.++...+.
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~ 112 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPE 112 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHH
Confidence 4567777888999999885543221 11112234556666667888874 3577788899999988875432
Q ss_pred -HHHHHhhcCCCcEEEEec--------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC
Q 010244 391 -ARTARALLGPDKIIGVSC--------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS 454 (514)
Q Consensus 391 -~~~~~~~~~~~~~ig~s~--------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~ 454 (514)
..++-+.++....++..+ .++.+ +....+.|++.+++..+-...+..+ ..++.++++++..
T Consensus 113 l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G---~d~~~i~~i~~~~ 189 (241)
T PRK14024 113 WCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTG---PNLELLREVCART 189 (241)
T ss_pred HHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccC---CCHHHHHHHHhhC
Confidence 112222222223333222 13334 6677799999999988776554433 4799999999988
Q ss_pred CCCEEEECCCC-cccHHHHHH---CCCCCCceEEEeecccCCCCHHH
Q 010244 455 KLPVVAIGGIG-ISNASDVMK---IGVSNLKGVAVVSALFDRECILP 497 (514)
Q Consensus 455 ~~pv~a~GGi~-~~~~~~~~~---~Ga~~~~gva~~~~i~~~~~~~~ 497 (514)
++||++-|||. .+++.++.+ .|++ ||.++++++...-..+
T Consensus 190 ~ipviasGGi~s~~D~~~l~~~~~~Gvd---gV~igra~~~g~~~~~ 233 (241)
T PRK14024 190 DAPVVASGGVSSLDDLRALAELVPLGVE---GAIVGKALYAGAFTLP 233 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHhhhccCCcc---EEEEeHHHHcCCCCHH
Confidence 99999999996 788888864 5999 9999999986543333
No 180
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.36 E-value=1.2e-05 Score=78.91 Aligned_cols=160 Identities=20% Similarity=0.149 Sum_probs=109.9
Q ss_pred HHHHHHHhCC-CCEEEEEcCCCCHHHHHHHHHHHHHH--HhhcCceEEEc-------CcHHHHHhCCCCeEEeCCCCCCH
Q 010244 322 DAVKAALEGG-ATIIQLREKDADTRGFLEAAKACLQI--CCVHGVPLLIN-------DRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 322 ~~~~~~~~~G-v~~v~lr~~~~~~~~~~~~~~~~~~~--~~~~~~~l~v~-------~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
+.+.+..++| +-++- ....+++++.+++++++++ -+.+|+.++.. +.++++.+.+...|.+....+.
T Consensus 18 ~LaaAVS~AGgLG~la--~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~- 94 (320)
T cd04743 18 EFAVAVAEGGGLPFIA--LALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPD- 94 (320)
T ss_pred HHHHHHHhCCccccCC--CCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChH-
Confidence 4455555555 44443 3445778888888888875 35688888652 2456777889988887766543
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEe------ccccCCCCCCCCccCCHHH-HHHHHHc------CCCCE
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGC------GGVYPTNTKANNLTVGLDG-LKTVCLA------SKLPV 458 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~------~~vf~t~~k~~~~~~g~~~-l~~~~~~------~~~pv 458 (514)
..++....+..+...+.|+.+++++.+.|+|.+++ ||+-+..+- .-++. +..+... .++||
T Consensus 95 -~~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~-----~L~~~v~~~l~~~~~~~~~~~iPV 168 (320)
T cd04743 95 -QARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGPRSSF-----VLWESAIDALLAANGPDKAGKIHL 168 (320)
T ss_pred -HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCCCCch-----hhHHHHHHHHHHhhcccccCCccE
Confidence 34556667888888899999999999999999988 444321111 11222 2222211 27999
Q ss_pred EEECCCC-cccHHHHHHCCC--------CCCceEEEeecccCCC
Q 010244 459 VAIGGIG-ISNASDVMKIGV--------SNLKGVAVVSALFDRE 493 (514)
Q Consensus 459 ~a~GGi~-~~~~~~~~~~Ga--------~~~~gva~~~~i~~~~ 493 (514)
+|.|||. ...+..++.+|+ + ||.+|+.|+.++
T Consensus 169 iAAGGI~dgr~~aaalaLGA~~~~~Ga~~---GV~mGTrFl~t~ 209 (320)
T cd04743 169 LFAGGIHDERSAAMVSALAAPLAERGAKV---GVLMGTAYLFTE 209 (320)
T ss_pred EEEcCCCCHHHHHHHHHcCCccccccccc---EEEEccHHhcch
Confidence 9999996 566788888888 8 999999998543
No 181
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.34 E-value=8e-05 Score=70.95 Aligned_cols=175 Identities=21% Similarity=0.231 Sum_probs=108.9
Q ss_pred HHHHHhCCCCEEEEEcCC-------CCHHHHHHHHHHHHHHHhh----cCceEEEcCc---HHHHHhCCCCeEEeC----
Q 010244 324 VKAALEGGATIIQLREKD-------ADTRGFLEAAKACLQICCV----HGVPLLINDR---IDIALACDADGVHLG---- 385 (514)
Q Consensus 324 ~~~~~~~Gv~~v~lr~~~-------~~~~~~~~~~~~~~~~~~~----~~~~l~v~~~---~~~a~~~ga~gvhl~---- 385 (514)
++.+-++|++.|.+-.-. .+++.......-+.++.+. +|+.++-|+. +.+|.+.|+++|-..
T Consensus 34 a~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~~~~g 113 (257)
T TIGR00259 34 AMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVNVLTG 113 (257)
T ss_pred HHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEccEee
Confidence 344557899999994422 2233233333332233233 5677777774 467888999987442
Q ss_pred ----CCC---C---CHHHHHhhcCCCcEEEEec----------CCHHH-HHHhhhCC-CcEEEeccccCCCCCCCCccCC
Q 010244 386 ----QSD---M---PARTARALLGPDKIIGVSC----------KTPEE-AHQAWIDG-ANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 386 ----~~~---~---~~~~~~~~~~~~~~ig~s~----------~~~~e-~~~a~~~g-~d~v~~~~vf~t~~k~~~~~~g 443 (514)
..- . +....|+.++.+..+-..+ .+++| ++.+...| +|.++++-.-. ..+..
T Consensus 114 ~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~T------G~~~d 187 (257)
T TIGR00259 114 VYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTT------GTEVD 187 (257)
T ss_pred eEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCC------CCCCC
Confidence 111 1 1223444444444443322 25666 55556666 99998875222 22357
Q ss_pred HHHHHHHHHcC-CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCC---H--HHHHHHHHHHHHH
Q 010244 444 LDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDREC---I--LPESKKLHAVLMD 508 (514)
Q Consensus 444 ~~~l~~~~~~~-~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~---~--~~~~~~~~~~~~~ 508 (514)
|+.++.+++.. ++|++.-||++++|+.++++. ++ |+-++|.|-...+ + .+.+++|.+.+++
T Consensus 188 ~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~-ad---GviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 188 LELLKLAKETVKDTPVLAGSGVNLENVEELLSI-AD---GVIVATTIKKDGVFNNFVDQARVSQFVEKVAH 254 (257)
T ss_pred HHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh-CC---EEEECCCcccCCccCCCcCHHHHHHHHHHHHH
Confidence 99999998754 799999999999999999998 99 9999999863221 1 3456666666554
No 182
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.31 E-value=1.7e-05 Score=74.82 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCCEEEE-EcC---CCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCC
Q 010244 320 ITDAVKAALEGGATIIQL-REK---DADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~l-r~~---~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~ 389 (514)
..+++..--++|+.++-+ +++ +.+.+. +.........|++..| ++..|..+|||.|-|--..+
T Consensus 68 p~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~-------L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L 140 (254)
T COG0134 68 PVEIAKAYEEGGAAAISVLTDPKYFQGSFED-------LRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 140 (254)
T ss_pred HHHHHHHHHHhCCeEEEEecCccccCCCHHH-------HHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhc
Confidence 344555555667776655 333 223222 2333445566776655 46788899999885544333
Q ss_pred CHH----HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECC
Q 010244 390 PAR----TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGG 463 (514)
Q Consensus 390 ~~~----~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GG 463 (514)
+.. ........++-+=+.+||.+|+.+|.+.|++.|++ ...+-+. -...++....+...+ ++-++...|
T Consensus 141 ~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGI---NnRdL~t--f~vdl~~t~~la~~~p~~~~~IsESG 215 (254)
T COG0134 141 DDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGI---NNRDLTT--LEVDLETTEKLAPLIPKDVILISESG 215 (254)
T ss_pred CHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEE---eCCCcch--heecHHHHHHHHhhCCCCcEEEecCC
Confidence 322 22223345666667899999999999999999955 2221110 113566666776665 477999999
Q ss_pred CC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 464 IG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 464 i~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
|+ ++++..+.+.|++ |+-+|+++|.++|+.+.++++.
T Consensus 216 I~~~~dv~~l~~~ga~---a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 216 ISTPEDVRRLAKAGAD---AFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred CCCHHHHHHHHHcCCC---EEEecHHHhcCCCHHHHHHHhh
Confidence 97 9999999999999 9999999999999999888764
No 183
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.31 E-value=1.9e-05 Score=78.02 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=90.7
Q ss_pred CHHHHHHHHHhCCC--CEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 319 SITDAVKAALEGGA--TIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv--~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
+..+.+.+++++|+ +.|++--.+..-....+++ ..+++
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I----------------------------------------~~ir~ 136 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMI----------------------------------------QHIKK 136 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHH----------------------------------------HHHHh
Confidence 45677889999965 9999966665444433332 23333
Q ss_pred hcCCCcEEEE-ecCCHHHHHHhhhCCCcEEEeccccCCC--C--CCC--CccCCHHHHHHHHHcCCCCEEEECCCC-ccc
Q 010244 397 LLGPDKIIGV-SCKTPEEAHQAWIDGANYIGCGGVYPTN--T--KAN--NLTVGLDGLKTVCLASKLPVVAIGGIG-ISN 468 (514)
Q Consensus 397 ~~~~~~~ig~-s~~~~~e~~~a~~~g~d~v~~~~vf~t~--~--k~~--~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~ 468 (514)
.+ ++..+.+ .+.|++++..+.+.|+|++.+|----+. + ..+ .+..++..+.++++..++||+|.|||. +.+
T Consensus 137 ~~-p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~D 215 (326)
T PRK05458 137 HL-PETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGD 215 (326)
T ss_pred hC-CCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 33 2233333 4779999999999999998775222211 1 111 122244568888887899999999996 899
Q ss_pred HHHHHHCCCCCCceEEEeecccCC
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+.+++.+||+ +|.+|+.|...
T Consensus 216 i~KaLa~GA~---aV~vG~~~~~~ 236 (326)
T PRK05458 216 IAKSIRFGAT---MVMIGSLFAGH 236 (326)
T ss_pred HHHHHHhCCC---EEEechhhcCC
Confidence 9999999999 99999999854
No 184
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.31 E-value=3.2e-05 Score=74.09 Aligned_cols=190 Identities=21% Similarity=0.182 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHH---HH---------------HHHHHHHHHH-hhcCceEEEcC---------
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRG---FL---------------EAAKACLQIC-CVHGVPLLIND--------- 369 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~---~~---------------~~~~~~~~~~-~~~~~~l~v~~--------- 369 (514)
+...+.+..+.++|+++++|-.+..++.. .+ +..+.+.++. ...++++++..
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G 103 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYG 103 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccc
Confidence 57889999999999999999766544210 11 1122233344 34577887744
Q ss_pred ---cHHHHHhCCCCeEEeCCCCCCH----HHHHhhcCCCcEEEEecCCHHH-HHHhhhCCCcEEEe-ccccCCCCCCCCc
Q 010244 370 ---RIDIALACDADGVHLGQSDMPA----RTARALLGPDKIIGVSCKTPEE-AHQAWIDGANYIGC-GGVYPTNTKANNL 440 (514)
Q Consensus 370 ---~~~~a~~~ga~gvhl~~~~~~~----~~~~~~~~~~~~ig~s~~~~~e-~~~a~~~g~d~v~~-~~vf~t~~k~~~~ 440 (514)
..+.+.++|++|+-+|.--.+. ....+..+...+.-++-+|+++ +....+..-.||-+ +..-.|..+...+
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~ 183 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELP 183 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCH
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccch
Confidence 3456678899999997643321 1222334556666677766554 55555565667665 3333344443333
Q ss_pred cCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC-----CCCHHHHHHHHHHHHHHHhh
Q 010244 441 TVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD-----RECILPESKKLHAVLMDAVQ 511 (514)
Q Consensus 441 ~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~-----~~~~~~~~~~~~~~~~~~~~ 511 (514)
..-.+.++++++..++||++==||+ ++++..+. .|+| ||.+||+|.+ .++..+.++++.+.+++..+
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aD---GvIVGSa~v~~i~~~~~~~~~~~~~~~~~~~~lk~ 256 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGAD---GVIVGSAFVKIIEENGDDAEKFLKELKEFVRELKE 256 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSS---EEEESHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCC---EEEECHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence 2223778888888899999998996 78888888 9999 9999999983 35566777777777766543
No 185
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.30 E-value=1.4e-05 Score=79.86 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=84.9
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhc
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALL 398 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~ 398 (514)
+..+.++.++++|++.|.+...+.+.....+.++++++..
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~---------------------------------------- 133 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKY---------------------------------------- 133 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHC----------------------------------------
Confidence 4567888899999999988665444444444444333211
Q ss_pred CCCcEEE-EecCCHHHHHHhhhCCCcEEEec--c--ccCCCCCCCCccCCHHHHHHHHHc---CCCCEEEECCCC-cccH
Q 010244 399 GPDKIIG-VSCKTPEEAHQAWIDGANYIGCG--G--VYPTNTKANNLTVGLDGLKTVCLA---SKLPVVAIGGIG-ISNA 469 (514)
Q Consensus 399 ~~~~~ig-~s~~~~~e~~~a~~~g~d~v~~~--~--vf~t~~k~~~~~~g~~~l~~~~~~---~~~pv~a~GGi~-~~~~ 469 (514)
++..++ ..+.|+++++.+.+.|+|+|.++ | ...|....+.....+..+.++.+. .++||+|.|||. +.++
T Consensus 134 -p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di 212 (325)
T cd00381 134 -PNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDI 212 (325)
T ss_pred -CCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHH
Confidence 112222 24668888999999999999773 2 111111111111234444555443 369999999997 7999
Q ss_pred HHHHHCCCCCCceEEEeecccCCC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
..++.+||+ +|.+|+.|...+
T Consensus 213 ~kAla~GA~---~VmiGt~fa~t~ 233 (325)
T cd00381 213 VKALAAGAD---AVMLGSLLAGTD 233 (325)
T ss_pred HHHHHcCCC---EEEecchhcccc
Confidence 999999999 999999998543
No 186
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.28 E-value=5.8e-05 Score=71.80 Aligned_cols=165 Identities=10% Similarity=0.030 Sum_probs=112.8
Q ss_pred HHHHHHHHh-CCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC---
Q 010244 321 TDAVKAALE-GGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP--- 390 (514)
Q Consensus 321 ~~~~~~~~~-~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~--- 390 (514)
.+.++...+ .|++.+++-+=+............++++++..+.++.+-. +++....+|++-+.++.....
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~ 113 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTD 113 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHH
Confidence 346666667 6999999976544432222233445566666678888743 566777899999999886432
Q ss_pred -HHHHHhhcCCCcEEEEecC---------------CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc
Q 010244 391 -ARTARALLGPDKIIGVSCK---------------TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA 453 (514)
Q Consensus 391 -~~~~~~~~~~~~~ig~s~~---------------~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~ 453 (514)
..++...++....++.... ++.+ +.+..+.|+..+++..+-...+. ....++.++++++.
T Consensus 114 ~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~---~G~~~~li~~l~~~ 190 (234)
T PRK13587 114 WLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKM---SGPNFELTGQLVKA 190 (234)
T ss_pred HHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCC---CccCHHHHHHHHHh
Confidence 2334444443334443331 2233 55667889988877665543332 33568889999888
Q ss_pred CCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 454 SKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 454 ~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
.++||++.||+. ++++.++++.|++ ++.+|+++..
T Consensus 191 ~~ipvi~~GGi~s~edi~~l~~~G~~---~vivG~a~~~ 226 (234)
T PRK13587 191 TTIPVIASGGIRHQQDIQRLASLNVH---AAIIGKAAHQ 226 (234)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHcCCC---EEEEhHHHHh
Confidence 899999999996 7899999999999 9999999985
No 187
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.27 E-value=9.5e-06 Score=85.54 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=84.3
Q ss_pred cHHHHHhCCCCeEEeCCCCC-------CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEec--cccCCCCCC---
Q 010244 370 RIDIALACDADGVHLGQSDM-------PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG--GVYPTNTKA--- 437 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~-------~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~--~vf~t~~k~--- 437 (514)
+++...++|+|.+-+...+. .+..+++.++...++...+.|+++++.+.++|+|.|.+| +-.-..++.
T Consensus 252 r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~ 331 (505)
T PLN02274 252 RLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCA 331 (505)
T ss_pred HHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccc
Confidence 45556677788776654432 134555554334444567999999999999999999764 332222221
Q ss_pred -CCccC-CHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 438 -NNLTV-GLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 438 -~~~~~-g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+.+.. .+..+.++++..++||+|.|||. +.++..++++||+ +|.+|+.|...
T Consensus 332 ~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~---~V~vGs~~~~t 386 (505)
T PLN02274 332 VGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGAS---TVMMGSFLAGT 386 (505)
T ss_pred cCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCC---EEEEchhhccc
Confidence 11221 34557777777789999999996 8999999999999 99999999854
No 188
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=98.25 E-value=1.8e-05 Score=77.73 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=100.8
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCHHHH--HHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 320 ITDAVKAALEGGATIIQLREKDADTRGF--LEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
+.-.++.+++.|++.|-+...-.+..+. ++.+.++.+.|+++|.++++.-++. |-.+.......
T Consensus 148 l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpR--------G~~i~~~~d~~------ 213 (348)
T PRK09250 148 LTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLR--------NSAFKKDGDYH------ 213 (348)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeccc--------CcccCCccccc------
Confidence 4445888999999999888876665543 4445667788999999999866543 11111111000
Q ss_pred cCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCcc-----------------CCHHHHHHHHHcC---CCC
Q 010244 398 LGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLT-----------------VGLDGLKTVCLAS---KLP 457 (514)
Q Consensus 398 ~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~-----------------~g~~~l~~~~~~~---~~p 457 (514)
..++. -..-++.|.++|||+| ++.+|.+...... -..+.++++...+ ++|
T Consensus 214 ~~~d~-------Ia~AaRiaaELGADIV---Kv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vp 283 (348)
T PRK09250 214 TAADL-------TGQANHLAATIGADII---KQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRG 283 (348)
T ss_pred ccHHH-------HHHHHHHHHHHcCCEE---EecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCce
Confidence 00000 1234788889999999 7777643222111 2346677778776 899
Q ss_pred EEEECCCCcc------cHHHH---HHCCCCCCceEEEeecccCCCCHH
Q 010244 458 VVAIGGIGIS------NASDV---MKIGVSNLKGVAVVSALFDRECIL 496 (514)
Q Consensus 458 v~a~GGi~~~------~~~~~---~~~Ga~~~~gva~~~~i~~~~~~~ 496 (514)
|+..||-..+ .+..+ ++.|+. |+++|+.+||.++++
T Consensus 284 VviAGG~k~~~~e~L~~v~~a~~~i~aGa~---Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 284 LINSGGASKGEDDLLDAVRTAVINKRAGGM---GLIIGRKAFQRPMAE 328 (348)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhhcCCc---chhhchhhhcCCcHH
Confidence 9999999742 35677 889999 999999999988754
No 189
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=98.25 E-value=3.3e-05 Score=83.74 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=123.1
Q ss_pred CHHHHHHHHHhCCCCEEEE-EcC---CCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCC
Q 010244 319 SITDAVKAALEGGATIIQL-REK---DADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSD 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~l-r~~---~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~ 388 (514)
+..+.+....++|+..|-+ +++ ..+.+++. .+.+..+++++-.| ++..|..+|||.|-|-..-
T Consensus 71 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~-------~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~ 143 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLTEGRRFLGSLDDFD-------KVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAA 143 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHH-------HHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhh
Confidence 4566777777889877765 333 33443322 22233456776544 3567889999999887665
Q ss_pred CCHHHHH----hhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEEC
Q 010244 389 MPARTAR----ALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIG 462 (514)
Q Consensus 389 ~~~~~~~----~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~G 462 (514)
+....++ .....++-+-+-+||.+|+.+|.+.|++.|++-. -+-+. -...++...++...+ ++.+++.+
T Consensus 144 L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINn---RdL~t--f~vd~~~t~~L~~~ip~~~~~VsES 218 (695)
T PRK13802 144 LDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINA---RNLKD--LKVDVNKYNELAADLPDDVIKVAES 218 (695)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeC---CCCcc--ceeCHHHHHHHHhhCCCCcEEEEcC
Confidence 5543332 3334566777789999999999999999996532 11111 123566667776665 56789999
Q ss_pred CCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHH
Q 010244 463 GIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLM 507 (514)
Q Consensus 463 Gi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~ 507 (514)
||. ++++..+.++|++ +|-+|++||.++||.+.+++|...-+
T Consensus 219 GI~~~~d~~~l~~~G~d---avLIGeslm~~~dp~~~~~~l~~~~~ 261 (695)
T PRK13802 219 GVFGAVEVEDYARAGAD---AVLVGEGVATADDHELAVERLVKAGA 261 (695)
T ss_pred CCCCHHHHHHHHHCCCC---EEEECHHhhCCCCHHHHHHHHHhccc
Confidence 997 8999999999999 99999999999999999998876543
No 190
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.22 E-value=3.1e-05 Score=77.94 Aligned_cols=104 Identities=25% Similarity=0.252 Sum_probs=75.9
Q ss_pred HHHhhcCCCcEEEEecC---------CHHH----HHHhhhCCCcEEEeccccCCCCCCC------CccCCHHHHHHHHHc
Q 010244 393 TARALLGPDKIIGVSCK---------TPEE----AHQAWIDGANYIGCGGVYPTNTKAN------NLTVGLDGLKTVCLA 453 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~---------~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~------~~~~g~~~l~~~~~~ 453 (514)
.+|+..+.+..+++-.. +.+| +..+.+.|+||+-++.-+....... .....++.++.+++.
T Consensus 200 avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 200 AVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred HHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 44555566777776333 4455 4567789999998876655432211 123567888889888
Q ss_pred CCCCEEEECCCC-cccHHHHHHC-CCCCCceEEEeecccCCCCHHHHH
Q 010244 454 SKLPVVAIGGIG-ISNASDVMKI-GVSNLKGVAVVSALFDRECILPES 499 (514)
Q Consensus 454 ~~~pv~a~GGi~-~~~~~~~~~~-Ga~~~~gva~~~~i~~~~~~~~~~ 499 (514)
+++||++.|||+ ++++.++++. |++ .|++++.++..++....+
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD---~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKAD---LVALGRALLADPDLPNKA 324 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCC---eeeecHHHHhCccHHHHH
Confidence 899999999997 8999999998 799 999999999877654433
No 191
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.21 E-value=8.5e-05 Score=70.76 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCCC-
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDMP- 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~~- 390 (514)
.+..+.++...+.|++.+++=+=+... ........+..+++..+.++.+. ++++.+...||+-|-++.....
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~-~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~ 113 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM-GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS 113 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc-CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence 356677888888999999985543321 11122233445555656788774 3566778899999998876543
Q ss_pred --HHHHHhhcCC-CcEEEEecC-----------CHHHHHH-hhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC
Q 010244 391 --ARTARALLGP-DKIIGVSCK-----------TPEEAHQ-AWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK 455 (514)
Q Consensus 391 --~~~~~~~~~~-~~~ig~s~~-----------~~~e~~~-a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~ 455 (514)
..++-+.++. ..++++.+. ++.++.+ ..+. ++.+.+..+-...+. ....++.++++++..+
T Consensus 114 ~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~---~g~~~~~~~~i~~~~~ 189 (233)
T cd04723 114 DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGSG---QGPDLELLERLAARAD 189 (233)
T ss_pred hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCccccC---CCcCHHHHHHHHHhcC
Confidence 2333334443 456666552 3666544 4455 888877665443332 3346788999998889
Q ss_pred CCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 456 LPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 456 ~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+||++.|||. .+++.++++.|++ +|.+|++++...
T Consensus 190 ipvi~~GGi~s~edi~~l~~~G~~---~vivGsal~~g~ 225 (233)
T cd04723 190 IPVIAAGGVRSVEDLELLKKLGAS---GALVASALHDGG 225 (233)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCC---EEEEehHHHcCC
Confidence 9999999996 7999999999999 999999998653
No 192
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.17 E-value=0.00027 Score=66.01 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCCC-
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDMP- 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~~- 390 (514)
++..+......+.|++++++.+=+.-..-.......++++++...+++-+- ++++...++|++.|-++.....
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~ 110 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKN 110 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecC
Confidence 345567778888999999997743322111122234556666667777663 2566777899999988774421
Q ss_pred ---HHHHHhhcCCCcEEEEecC---------------CHHH-HHHhhhCCCcEEEeccccCCCCCCC-CccCCHHHHHHH
Q 010244 391 ---ARTARALLGPDKIIGVSCK---------------TPEE-AHQAWIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTV 450 (514)
Q Consensus 391 ---~~~~~~~~~~~~~ig~s~~---------------~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~ 450 (514)
..++.+.++....++++|. ++.| +++-.+.|+..+++.-+ ++.+ .....++..+++
T Consensus 111 p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI----~~DGtl~G~n~~l~~~l 186 (241)
T COG0106 111 PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDI----SRDGTLSGPNVDLVKEL 186 (241)
T ss_pred HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEec----ccccccCCCCHHHHHHH
Confidence 2344455554555666554 4444 55666788887766543 3333 355678999999
Q ss_pred HHcCCCCEEEECCCC-cccHHHHHHC-CCCCCceEEEeecccCC-CCHHHHHHH
Q 010244 451 CLASKLPVVAIGGIG-ISNASDVMKI-GVSNLKGVAVVSALFDR-ECILPESKK 501 (514)
Q Consensus 451 ~~~~~~pv~a~GGi~-~~~~~~~~~~-Ga~~~~gva~~~~i~~~-~~~~~~~~~ 501 (514)
++..++||++.|||+ .+++..+.+. |+. |+.+|++|+.- -++.++.+.
T Consensus 187 ~~~~~ipviaSGGv~s~~Di~~l~~~~G~~---GvIvG~ALy~g~~~l~ea~~~ 237 (241)
T COG0106 187 AEAVDIPVIASGGVSSLDDIKALKELSGVE---GVIVGRALYEGKFTLEEALAC 237 (241)
T ss_pred HHHhCcCEEEecCcCCHHHHHHHHhcCCCc---EEEEehHHhcCCCCHHHHHHH
Confidence 999999999999997 7899999999 899 99999999953 345554443
No 193
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.11 E-value=7.5e-05 Score=73.54 Aligned_cols=170 Identities=18% Similarity=0.186 Sum_probs=112.6
Q ss_pred CHHHHHHHHHhCCCCEEEE-EcC---CCCHHHHHHHHHHHHHHHhh-cCceEEEcC------cHHHHHhCCCCeEEeCCC
Q 010244 319 SITDAVKAALEGGATIIQL-REK---DADTRGFLEAAKACLQICCV-HGVPLLIND------RIDIALACDADGVHLGQS 387 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~l-r~~---~~~~~~~~~~~~~~~~~~~~-~~~~l~v~~------~~~~a~~~ga~gvhl~~~ 387 (514)
+..++....-++|+.++-+ +++ ..+.+.+ + .+++ . .+.+++-.| ++..|..+|||.|-|-..
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L-~---~vr~---~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaa 212 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQGSFENL-E---AIRN---AGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAA 212 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHH-H---HHHH---cCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHH
Confidence 3456666677788877765 333 3343332 2 2222 2 345665433 356788999999876554
Q ss_pred CCCHHHHH----hhcCCCcEEEEecCCHHHHHHhhhC-CCcEEEeccccCCCCCCCCccCCHHHHHHHHH-----cC---
Q 010244 388 DMPARTAR----ALLGPDKIIGVSCKTPEEAHQAWID-GANYIGCGGVYPTNTKANNLTVGLDGLKTVCL-----AS--- 454 (514)
Q Consensus 388 ~~~~~~~~----~~~~~~~~ig~s~~~~~e~~~a~~~-g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~-----~~--- 454 (514)
-++...++ .....++-+-+-+||.+|+.+|.+. |++.|++-. -+-+ .-...++...++.. .+
T Consensus 213 iL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINN---RdL~--Tf~vDl~~t~~L~~~~~~~~i~~~ 287 (338)
T PLN02460 213 VLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINN---RSLE--TFEVDISNTKKLLEGERGEQIREK 287 (338)
T ss_pred hCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC---CCCC--cceECHHHHHHHhhhccccccCCC
Confidence 44432222 2233566666779999999999998 999996632 1111 01134555555555 12
Q ss_pred CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 455 KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 455 ~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
++-+++.+||. ++++..+.++|++ +|-+|.+||.++||.+.+++|.
T Consensus 288 ~~~~VsESGI~t~~Dv~~l~~~Gad---AvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 288 GIIVVGESGLFTPDDVAYVQNAGVK---AVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred CeEEEECCCCCCHHHHHHHHHCCCC---EEEECHHHhCCCCHHHHHHHHh
Confidence 34478999996 8999999999999 9999999999999999988874
No 194
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.10 E-value=5.9e-05 Score=75.43 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCC-CCEEEEEcCCCCHHHHHHHHHHHHHHHhh------cC-----c--eEEEc--C----cHHHHHhC-C
Q 010244 320 ITDAVKAALEGG-ATIIQLREKDADTRGFLEAAKACLQICCV------HG-----V--PLLIN--D----RIDIALAC-D 378 (514)
Q Consensus 320 ~~~~~~~~~~~G-v~~v~lr~~~~~~~~~~~~~~~~~~~~~~------~~-----~--~l~v~--~----~~~~a~~~-g 378 (514)
..+.+.+..++| +- .+-......+.+.+.+++++.+..+ ++ + .++.+ + ..+...+. +
T Consensus 27 ~~~LA~Avs~aGglG--~ia~~~~~~e~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~ 104 (336)
T COG2070 27 TPELAAAVSNAGGLG--IIASGGLPAEQLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAG 104 (336)
T ss_pred cHHHHHHHhccCCcc--ccccccCCHHHHHHHHHHHHHhcCCcchhcccccccccchhheecccccchHHhhhhHHhcCC
Confidence 344555555555 44 3344455556777777777766533 22 2 22332 1 22333333 5
Q ss_pred CCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCC---ccCCHHHHHHHHHcCC
Q 010244 379 ADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANN---LTVGLDGLKTVCLASK 455 (514)
Q Consensus 379 a~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~---~~~g~~~l~~~~~~~~ 455 (514)
..-+-......+...+......+..+..++-++.+++++.+.|+|.++..+.- .-.|.+. ..-....+.++++.++
T Consensus 105 vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~e-AGGH~g~~~~~~~t~~Lv~ev~~~~~ 183 (336)
T COG2070 105 VPVVSTSFGAPPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAE-AGGHRGGVDLEVSTFALVPEVVDAVD 183 (336)
T ss_pred CCEEeccCCCCcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCc-CCCcCCCCCCCccHHHHHHHHHHHhc
Confidence 54444444434555555555678899999999999999999999999885522 2223221 2223578888888888
Q ss_pred -CCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 456 -LPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 456 -~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+||+|.|||. .+.+..++.+||+ ||.+|+.|...+
T Consensus 184 ~iPViAAGGI~dg~~i~AAlalGA~---gVq~GT~Fl~t~ 220 (336)
T COG2070 184 GIPVIAAGGIADGRGIAAALALGAD---GVQMGTRFLATK 220 (336)
T ss_pred CCCEEEecCccChHHHHHHHHhccH---HHHhhhhhhccc
Confidence 8999999995 7889999999999 999999998543
No 195
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.05 E-value=0.00039 Score=66.34 Aligned_cols=163 Identities=13% Similarity=0.158 Sum_probs=109.8
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCH---HHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCC
Q 010244 319 SITDAVKAALEGGATIIQLREKDADT---RGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~ 389 (514)
+..+.++...+.|++.+++=+=+... ....+.++++.+ .. .++.+- ++++...+.|++-|.+++...
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~---~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSE---FA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHh---hc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 34567777778999999986544321 112334444443 33 467763 356677889999999988433
Q ss_pred C----HHHHHhhcCCCcEEEEec---------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHH
Q 010244 390 P----ARTARALLGPDKIIGVSC---------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKT 449 (514)
Q Consensus 390 ~----~~~~~~~~~~~~~ig~s~---------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~ 449 (514)
. ..++.+ ++....+++.+ .++.| +.+..+.|+..+++.-+-..-+. ....++.+++
T Consensus 107 ~~p~~l~~~~~-~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~---~G~d~el~~~ 182 (241)
T PRK14114 107 EDPSFLKFLKE-IDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL---QEHDFSLTRK 182 (241)
T ss_pred CCHHHHHHHHH-hCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcC---CCcCHHHHHH
Confidence 2 223322 33334444433 13555 67778899999988765544333 3357889999
Q ss_pred HHHcCCCCEEEECCCC-cccHHHHHHC-----C-CCCCceEEEeecccCC
Q 010244 450 VCLASKLPVVAIGGIG-ISNASDVMKI-----G-VSNLKGVAVVSALFDR 492 (514)
Q Consensus 450 ~~~~~~~pv~a~GGi~-~~~~~~~~~~-----G-a~~~~gva~~~~i~~~ 492 (514)
+++..++||+|.||+. .+++.++.+. | ++ |+.++++|+.-
T Consensus 183 l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~---gvivg~Al~~g 229 (241)
T PRK14114 183 IAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLK---GVIVGRAFLEG 229 (241)
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEE---EEEEehHHHCC
Confidence 9988899999999997 6899999986 5 88 99999999854
No 196
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.04 E-value=7.3e-05 Score=78.30 Aligned_cols=97 Identities=20% Similarity=0.146 Sum_probs=69.5
Q ss_pred HHHhhcCCCcEEEE-ecCCHHHHHHhhhCCCcEEEe----ccccCCCCCCCCccCCHHHHHHHHH---cCCCCEEEECCC
Q 010244 393 TARALLGPDKIIGV-SCKTPEEAHQAWIDGANYIGC----GGVYPTNTKANNLTVGLDGLKTVCL---ASKLPVVAIGGI 464 (514)
Q Consensus 393 ~~~~~~~~~~~ig~-s~~~~~e~~~a~~~g~d~v~~----~~vf~t~~k~~~~~~g~~~l~~~~~---~~~~pv~a~GGi 464 (514)
.+++.+ ++..+.+ .|-|.++++.+.++|+|+|.+ |.+-.|.-..+.....+..+.++++ ..++||+|.|||
T Consensus 261 ~ik~~~-p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi 339 (479)
T PRK07807 261 AVRALD-PGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV 339 (479)
T ss_pred HHHHHC-CCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC
Confidence 444444 3444444 888999999999999999874 3333333222222234555666655 458999999999
Q ss_pred C-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 465 G-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 465 ~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
. +.++..++.+||+ +|.+|+.|...+
T Consensus 340 ~~~~~~~~al~~ga~---~v~~g~~~ag~~ 366 (479)
T PRK07807 340 RHPRDVALALAAGAS---NVMIGSWFAGTY 366 (479)
T ss_pred CCHHHHHHHHHcCCC---eeeccHhhccCc
Confidence 6 8999999999999 999999998543
No 197
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=9.5e-05 Score=67.97 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=91.2
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCC-C-----cEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHH
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPV-R-----ALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASA 162 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~-~-----~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~ 162 (514)
++..|-+---.++++.+.+..+..-+.. + .+.+|- . ...+.+. .+...+|++....+=++.
T Consensus 132 qy~WihfE~Rnp~etlkM~~~I~~~N~r~pe~qrI~vSvd~----------e--n~req~~-~l~am~DyVf~sK~~a~~ 198 (308)
T KOG2947|consen 132 QYGWIHFEARNPSETLKMLQRIDAHNTRQPEEQRIRVSVDV----------E--NPREQLF-QLFAMCDYVFVSKDVAKH 198 (308)
T ss_pred eeeeEEEecCChHHHHHHHHHHHHhhcCCCccceEEEEEEe----------c--CcHHHHH-HHhhcccEEEEEHHHHhh
Confidence 5667776655456666555444332211 1 144552 1 1223443 678889999988776665
Q ss_pred hhCCCCCCCHHHHHHHHHHHH----hcCCCeEEEec-ccCCCCCCceEEEEeCCeEEEEeeccc-CCCCCCCCcchHHHH
Q 010244 163 LLGGMQVVTVADMCSAAKLLH----NLGPRTVLVKG-GDLPDSSDAVDIFFDGEDFHELRSSRV-NTRNTHGTGCTLASC 236 (514)
Q Consensus 163 L~g~~~~~~~~~~~~~a~~l~----~~g~~~Vvvt~-g~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~GaGD~f~a~ 236 (514)
+ |- .+..++++.+. +-+++.|+|-- +..| ...+..+++.+.+++.+. +++|+.|+||+|+|+
T Consensus 199 ~-gf------ks~rea~~~l~~r~~~~~pkpv~I~~w~~eG-----A~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~ 266 (308)
T KOG2947|consen 199 L-GF------KSPREACEGLYGRVPKGKPKPVLICPWASEG-----AGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAG 266 (308)
T ss_pred h-cc------CCHHHHHHHHHhhcccCCCCcEEEecccccc-----ccccCCCCCEEecCCCCCccceeeccCCCcchHH
Confidence 5 41 22344444443 23455666552 2322 133444556677776654 478999999999999
Q ss_pred HHHH-HHcCCCHHHHHHHHHHHHHH
Q 010244 237 IAAE-LAKGSPMLSAVKVAKCFVET 260 (514)
Q Consensus 237 i~~~-l~~g~~l~~A~~~A~~~~~~ 260 (514)
+++. |.++.++.||+.+|+.+++.
T Consensus 267 vIyA~lk~~r~l~eAvdfg~rvas~ 291 (308)
T KOG2947|consen 267 VIYALLKQGRSLAEAVDFGNRVASK 291 (308)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhc
Confidence 9988 67899999999999999543
No 198
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.01 E-value=4.3e-05 Score=73.80 Aligned_cols=86 Identities=24% Similarity=0.360 Sum_probs=69.0
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGI 466 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~ 466 (514)
..+++..+....+.+-|.|.+|+.+|.++|+|+|.+-. ..++.++++.+.. ++.+.|.|||++
T Consensus 173 ~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~ 240 (273)
T PRK05848 173 QHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYPHVLLEASGNITL 240 (273)
T ss_pred HHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCCCeEEEEECCCCH
Confidence 34555544457889999999999999999999997533 3566777776642 455999999999
Q ss_pred ccHHHHHHCCCCCCceEEEeecccCC
Q 010244 467 SNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 467 ~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+|+.++.++|++ .|.+|+.+.++
T Consensus 241 ~ni~~ya~~GvD---~IsvG~l~~sa 263 (273)
T PRK05848 241 ENINAYAKSGVD---AISSGSLIHQA 263 (273)
T ss_pred HHHHHHHHcCCC---EEEeChhhcCC
Confidence 999999999999 99999987744
No 199
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.99 E-value=0.00031 Score=65.97 Aligned_cols=191 Identities=15% Similarity=0.060 Sum_probs=111.4
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHH----HHHHHHHHhhcCceEE----EcC---c
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEA----AKACLQICCVHGVPLL----IND---R 370 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~----~~~~~~~~~~~~~~l~----v~~---~ 370 (514)
+++++-.|-.. .++..++++++ ...++++.+=. .-+... ++.+++.+ -+.+++ ++| .
T Consensus 4 ~~l~vALD~~~----~~~a~~l~~~l-~~~v~~~kvG~-----~l~~~~G~~~i~~lk~~~--~~~~v~~DLK~~Di~~~ 71 (216)
T PRK13306 4 PLLQIALDNQD----LESAIEDAKKV-AEEVDIIEVGT-----ILLLAEGMKAVRVLRALY--PDKIIVADTKIADAGKI 71 (216)
T ss_pred CcEEEEecCCC----HHHHHHHHHHc-cccCCEEEECh-----HHHHHhCHHHHHHHHHHC--CCCEEEEEEeecCCcHH
Confidence 45555556432 14566666654 44577877622 222222 33343332 133443 333 2
Q ss_pred HH-HHHhCCCCeE--EeCCCCCCHHHH-HhhcCCCcEEEEecC---CHHHHHHhhhCCCcEEEe-ccccCCCCCCCCccC
Q 010244 371 ID-IALACDADGV--HLGQSDMPARTA-RALLGPDKIIGVSCK---TPEEAHQAWIDGANYIGC-GGVYPTNTKANNLTV 442 (514)
Q Consensus 371 ~~-~a~~~ga~gv--hl~~~~~~~~~~-~~~~~~~~~ig~s~~---~~~e~~~a~~~g~d~v~~-~~vf~t~~k~~~~~~ 442 (514)
+. .+.++|+|.+ |........... +.....+..+|++.. +.+++....+.+.+.+++ -.+.+-..-....+.
T Consensus 72 v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~ 151 (216)
T PRK13306 72 LAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEK 151 (216)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHH
Confidence 22 4678999965 653333212222 211223567777664 455665555656554433 222221110112223
Q ss_pred CHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 443 GLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 443 g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.++.++++++. +..+...|||+++++....+.|++ .+.+||+|++++||.++++++++.+.+
T Consensus 152 ~~~~ir~~~~~-~~~i~V~gGI~~~~~~~~~~~~ad---~~VvGr~I~~a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 152 DLNKVKKLSDM-GFKVSVTGGLVVEDLKLFKGIPVK---TFIAGRAIRGAADPAAAARAFKDEIAK 213 (216)
T ss_pred HHHHHHHHhcC-CCeEEEcCCCCHhhHHHHhcCCCC---EEEECCcccCCCCHHHHHHHHHHHHHh
Confidence 34556666542 445899999999999999999999 999999999999999999999999865
No 200
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.97 E-value=0.00014 Score=71.96 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHhhhCCCcEEEeccccCCCC----------C---CCC-----ccCCHHHHHHHHHcC--CCCEEEECCCC-cccHHH
Q 010244 413 EAHQAWIDGANYIGCGGVYPTNT----------K---ANN-----LTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASD 471 (514)
Q Consensus 413 e~~~a~~~g~d~v~~~~vf~t~~----------k---~~~-----~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~ 471 (514)
-+..+.+.|+|++.+..-+.... + .+. .+.+++.++++++.+ ++||++.|||+ ++++.+
T Consensus 181 ~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~ 260 (289)
T cd02810 181 LAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLE 260 (289)
T ss_pred HHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 35667789999998753221100 0 000 112467788888888 89999999997 799999
Q ss_pred HHHCCCCCCceEEEeecccCC-CC
Q 010244 472 VMKIGVSNLKGVAVVSALFDR-EC 494 (514)
Q Consensus 472 ~~~~Ga~~~~gva~~~~i~~~-~~ 494 (514)
++.+||+ +|.++++++.. .+
T Consensus 261 ~l~~GAd---~V~vg~a~~~~GP~ 281 (289)
T cd02810 261 MLMAGAS---AVQVATALMWDGPD 281 (289)
T ss_pred HHHcCcc---HheEcHHHHhcCcc
Confidence 9999999 99999999975 44
No 201
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.97 E-value=0.00012 Score=72.46 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=63.4
Q ss_pred EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCce
Q 010244 406 VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKG 482 (514)
Q Consensus 406 ~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~g 482 (514)
-.+.++++++.+.+.|+|+|.++.-..+. ....+..++.+.++++.+ ++||++.|||. ..++.+++.+||+ +
T Consensus 178 K~v~s~~~a~~a~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd---~ 252 (299)
T cd02809 178 KGILTPEDALRAVDAGADGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGAD---A 252 (299)
T ss_pred eecCCHHHHHHHHHCCCCEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCC---E
Confidence 34689999999999999999885422111 111234578888887766 59999999995 8999999999999 9
Q ss_pred EEEeecccC
Q 010244 483 VAVVSALFD 491 (514)
Q Consensus 483 va~~~~i~~ 491 (514)
|.+++.++.
T Consensus 253 V~ig~~~l~ 261 (299)
T cd02809 253 VLIGRPFLY 261 (299)
T ss_pred EEEcHHHHH
Confidence 999999873
No 202
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.96 E-value=9.2e-05 Score=77.55 Aligned_cols=119 Identities=21% Similarity=0.196 Sum_probs=78.0
Q ss_pred HHHHHhCCCCeEEeCCCCC-------CHHHHHhhcCCCcEEEE-ecCCHHHHHHhhhCCCcEEEecc-ccCCCCCCCCcc
Q 010244 371 IDIALACDADGVHLGQSDM-------PARTARALLGPDKIIGV-SCKTPEEAHQAWIDGANYIGCGG-VYPTNTKANNLT 441 (514)
Q Consensus 371 ~~~a~~~ga~gvhl~~~~~-------~~~~~~~~~~~~~~ig~-s~~~~~e~~~a~~~g~d~v~~~~-vf~t~~k~~~~~ 441 (514)
.+...+.|++.+++...+. ....+++.+. +..+++ .+.|+++++.+.++|+|+|-+|. .-.+.+......
T Consensus 229 ~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~-~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~ 307 (450)
T TIGR01302 229 AEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYP-DLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAG 307 (450)
T ss_pred HHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecC
Confidence 3444566777777755332 1334444443 444444 78899999999999999997652 111111111112
Q ss_pred CC---HHHHHHH---HHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 442 VG---LDGLKTV---CLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 442 ~g---~~~l~~~---~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
.| +..+.++ ++..++||+|.|||. +.++..++++||+ .|.+|+.|...+
T Consensus 308 ~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~---~V~~G~~~a~~~ 363 (450)
T TIGR01302 308 VGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGAD---AVMLGSLLAGTT 363 (450)
T ss_pred CCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCC---EEEECchhhcCC
Confidence 22 3444444 334589999999996 8999999999999 999999998654
No 203
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.94 E-value=0.00025 Score=73.64 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=113.0
Q ss_pred CHHHHHHHHHhCCCCEEEE-EcC---CCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCC
Q 010244 319 SITDAVKAALEGGATIIQL-REK---DADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSD 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~l-r~~---~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~ 388 (514)
+..+..+.. +.|+.++-+ +++ ..+.+.+. .+.+....+++-.| ++..|..+|||.|-|-..-
T Consensus 71 d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~-------~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~ 142 (454)
T PRK09427 71 DPAEIARVY-KHYASAISVLTDEKYFQGSFDFLP-------IVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSV 142 (454)
T ss_pred CHHHHHHHH-HcCCeEEEEecCcCcCCCCHHHHH-------HHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHh
Confidence 345555555 888766654 333 33443322 22223345665443 4567889999999776655
Q ss_pred CCHHHH----HhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEEC
Q 010244 389 MPARTA----RALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIG 462 (514)
Q Consensus 389 ~~~~~~----~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~G 462 (514)
++...+ ......++-+-+-+||.+|+.+|.+.|++.|++-. .+-+ .-...++...++...+ ++.+++.+
T Consensus 143 L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNn---RdL~--t~~vd~~~~~~l~~~ip~~~~~vseS 217 (454)
T PRK09427 143 LDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINN---RNLR--DLSIDLNRTRELAPLIPADVIVISES 217 (454)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeC---CCCc--cceECHHHHHHHHhhCCCCcEEEEeC
Confidence 543222 22334566666779999999999999999996532 1111 1113556666666655 56789999
Q ss_pred CCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHH
Q 010244 463 GIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHA 504 (514)
Q Consensus 463 Gi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~ 504 (514)
||. ++++..+.. |++ ||-+|+++|.++||.+.+++|..
T Consensus 218 GI~t~~d~~~~~~-~~d---avLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 218 GIYTHAQVRELSP-FAN---GFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred CCCCHHHHHHHHh-cCC---EEEECHHHcCCCCHHHHHHHHhc
Confidence 996 788888765 799 99999999999999999988854
No 204
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.94 E-value=0.00043 Score=70.63 Aligned_cols=78 Identities=21% Similarity=0.078 Sum_probs=57.7
Q ss_pred CHHHHHHhhhCC-CcEEEeccccCCCCCCCC-ccCCH-HHHHHHHHcC--------CCCEEEECCC-CcccHHHHHHCCC
Q 010244 410 TPEEAHQAWIDG-ANYIGCGGVYPTNTKANN-LTVGL-DGLKTVCLAS--------KLPVVAIGGI-GISNASDVMKIGV 477 (514)
Q Consensus 410 ~~~e~~~a~~~g-~d~v~~~~vf~t~~k~~~-~~~g~-~~l~~~~~~~--------~~pv~a~GGi-~~~~~~~~~~~Ga 477 (514)
|++|+..|.+.| +|.|++. +....|.+. +...+ ..+.++++.+ ++||+|.||| +++.+..++.+||
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq--~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGA 242 (418)
T cd04742 165 TEEQAELARRVPVADDITVE--ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALGA 242 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc--ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcCC
Confidence 789999999999 6999886 454445432 22222 3344443333 5999999999 5899999999999
Q ss_pred CCCceEEEeecccCC
Q 010244 478 SNLKGVAVVSALFDR 492 (514)
Q Consensus 478 ~~~~gva~~~~i~~~ 492 (514)
+ +|.+||.|..+
T Consensus 243 d---~V~~GT~flat 254 (418)
T cd04742 243 D---FIVTGSINQCT 254 (418)
T ss_pred c---EEeeccHHHhC
Confidence 9 99999998854
No 205
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.93 E-value=0.0001 Score=74.73 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=61.8
Q ss_pred HHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccC
Q 010244 415 HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 415 ~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
..+.+.|+||+-++.-..+..+...+..+++.++.+++.. ++||++.||| +++++.++++.|++ +|+++++++.
T Consensus 242 ~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD---~V~~gR~lia 318 (353)
T cd04735 242 DKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGAD---LVAIGRGLLV 318 (353)
T ss_pred HHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCC---hHHHhHHHHh
Confidence 4566889999998765544433222223566777777665 7899999999 69999999999999 9999999998
Q ss_pred CCCHHHHH
Q 010244 492 RECILPES 499 (514)
Q Consensus 492 ~~~~~~~~ 499 (514)
.++....+
T Consensus 319 dPdl~~k~ 326 (353)
T cd04735 319 DPDWVEKI 326 (353)
T ss_pred CccHHHHH
Confidence 77755443
No 206
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.93 E-value=0.00056 Score=67.04 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=103.4
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----C---cHHHHHhC--CCCeEEeCCCCC-
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----D---RIDIALAC--DADGVHLGQSDM- 389 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~---~~~~a~~~--ga~gvhl~~~~~- 389 (514)
.+....+.+.|.=.+ -.|..+.+++.++++...+-+ +..+.+. + .++...++ ++|.+.+...+.
T Consensus 59 ~~mA~~la~~g~~~~--iHk~~~~e~~~~~v~~~~~~~---~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGh 133 (343)
T TIGR01305 59 FEMAAALSQHSIFTA--IHKHYSVDEWKAFATNSSPDC---LQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGY 133 (343)
T ss_pred HHHHHHHHHCCCeEE--EeeCCCHHHHHHHHHhhcccc---cceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCc
Confidence 445555666663333 356667787777766544322 2234332 2 33444455 488887765543
Q ss_pred ------CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEec--c--ccCCCCCCCCccCCHHHHHHHHHc---CCC
Q 010244 390 ------PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG--G--VYPTNTKANNLTVGLDGLKTVCLA---SKL 456 (514)
Q Consensus 390 ------~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~--~--vf~t~~k~~~~~~g~~~l~~~~~~---~~~ 456 (514)
.+..+|+.++...++.-.+-|++.++.+.+.|||.|-+| | +.-|....+.....+..+.++++. .++
T Consensus 134 s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v 213 (343)
T TIGR01305 134 SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKG 213 (343)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCC
Confidence 244566665433344444889999999999999998764 3 333333333222244555555544 378
Q ss_pred CEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 457 PVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 457 pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
||++-|||. ..++...+.+||+ .|.+|+.+...
T Consensus 214 ~VIaDGGIr~~gDI~KALA~GAd---~VMlG~llAG~ 247 (343)
T TIGR01305 214 HIISDGGCTCPGDVAKAFGAGAD---FVMLGGMFAGH 247 (343)
T ss_pred eEEEcCCcCchhHHHHHHHcCCC---EEEECHhhhCc
Confidence 999999997 7899999999999 99999877643
No 207
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.93 E-value=0.00038 Score=65.52 Aligned_cols=174 Identities=18% Similarity=0.168 Sum_probs=102.4
Q ss_pred HHHHHHHhCCCCEEEEEcCC-CCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCC----CCCCHH----
Q 010244 322 DAVKAALEGGATIIQLREKD-ADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQ----SDMPAR---- 392 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~----~~~~~~---- 392 (514)
+.++++++.|.+.|.+=-.. .+.+...++..+++ ++.+++++--.--....-+||++-+++ .+....
T Consensus 23 ~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik----~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~ 98 (232)
T PRK04169 23 EALEAICESGTDAIIVGGSDGVTEENVDELVKAIK----EYDLPVILFPGNIEGISPGADAYLFPSVLNSRNPYWIIGAH 98 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHh----cCCCCEEEeCCCccccCcCCCEEEEEEEecCCCcchHhhHH
Confidence 44578999999999986554 45555555555554 366777763221222334578775544 222110
Q ss_pred --HHHhh--------------cCCCcEEEE-ec-----CCHHHHHHhhhCCCcEEEeccccCCCCCCC-CccCCHHHHHH
Q 010244 393 --TARAL--------------LGPDKIIGV-SC-----KTPEEAHQAWIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKT 449 (514)
Q Consensus 393 --~~~~~--------------~~~~~~ig~-s~-----~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~ 449 (514)
.+... ..++..++. +. .+.+|+..+..+...|..+ +++.+....+ ..+...+.+++
T Consensus 99 ~~~~~~~~~~~le~ip~gYiv~~~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~-~~vYle~gs~~g~~~~~e~I~~ 177 (232)
T PRK04169 99 VEAAPIIKKGGLEVIPEGYIVLNPGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGM-PIVYLEYGGGAGDPVPPEMVKA 177 (232)
T ss_pred HHHHHHHhhcCcEECceEEEEECCCCeeeeeeccccCCCChHHHHHHHHHHHHHcCC-CeEEEECCCCCCCCCCHHHHHH
Confidence 01111 122223332 11 2566655554443222221 2222221112 23356899999
Q ss_pred HHHcCCC-CEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHH
Q 010244 450 VCLASKL-PVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAV 505 (514)
Q Consensus 450 ~~~~~~~-pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~ 505 (514)
+++.++. |++.-|||+ ++++.+++++||+ +|.+|+++.+ ||.+.++++++.
T Consensus 178 v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD---~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 178 VKKALDITPLIYGGGIRSPEQARELMAAGAD---TIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred HHHhcCCCcEEEECCCCCHHHHHHHHHhCCC---EEEEChHHhh--CHHHHHHHHHhh
Confidence 9998887 999999997 6799999999999 9999999994 556566665543
No 208
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.92 E-value=0.0002 Score=71.00 Aligned_cols=49 Identities=29% Similarity=0.431 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 442 VGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 442 ~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
..++.++++++.+++||++.||| +++++.+++++||+ +|.++++++..+
T Consensus 218 ~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd---~V~igra~l~~p 267 (296)
T cd04740 218 IALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGAS---AVQVGTANFVDP 267 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC---EEEEchhhhcCh
Confidence 45688888888889999999999 58999999999999 999999999743
No 209
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=97.92 E-value=0.00023 Score=71.15 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=102.2
Q ss_pred CcCEEEEcccCCHHHHHHHHHHHhcCCCCcEEEecceecCCCCCCCChhHHHHHHHhhcccceEEcCCHHHHHHhhCCCC
Q 010244 89 QVDVVKTGMLPSTDLVKVLLQSLSEFPVRALVVDPVMVSTSGDVLAGPSTITGLRENLLPMADIVTPNVKEASALLGGMQ 168 (514)
Q Consensus 89 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~ivlDPv~~~~~g~~~~~~~~~~~l~~~ll~~~diitpN~~E~~~L~g~~~ 168 (514)
+++.|++....++..+..+.+ ++.++.+ ++|.|.-.+ ...+.++..+....+.++||..|+-.......
T Consensus 425 ~a~~I~~DsNiS~~~Ma~il~-ak~~k~~-V~fEPTd~~---------k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~ 493 (614)
T KOG3009|consen 425 SADFILLDSNISVPVMARILE-AKKHKKQ-VWFEPTDID---------KVKKVFKTLLVGAITAISPNANELLKAAKLCH 493 (614)
T ss_pred cCCEEEEcCCCCHHHHHHHHH-hhhccCc-eEecCCCch---------hhhhhhhhcceeeEEeeCCCHHHHHHHhhcCc
Confidence 688999988888888888888 7777665 999994322 12233332233457899999999843332111
Q ss_pred -------CCCHHHHHHHHHHHHh---cCCCeEEEecccCCCCCCceEEE-Ee-CCeE---EEEeecc--cCCCCCCCCcc
Q 010244 169 -------VVTVADMCSAAKLLHN---LGPRTVLVKGGDLPDSSDAVDIF-FD-GEDF---HELRSSR--VNTRNTHGTGC 231 (514)
Q Consensus 169 -------~~~~~~~~~~a~~l~~---~g~~~Vvvt~g~~g~~~~~~~~~-~~-~~~~---~~~~~~~--~~~~d~~GaGD 231 (514)
++......+.++.+.+ .+....++|....| .++ |. ..+. ..++.++ .++++..|+||
T Consensus 494 v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G------~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGd 567 (614)
T KOG3009|consen 494 VSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKG------SLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGD 567 (614)
T ss_pred eeeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccCc------eEEEecCCCCCcccccCCCcccccceeEeccCCc
Confidence 1222333444444332 35567788887766 333 32 2222 2233332 23568899999
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Q 010244 232 TLASCIAAELAKGSPMLSAVKVAKCFVETALDY 264 (514)
Q Consensus 232 ~f~a~i~~~l~~g~~l~~A~~~A~~~~~~~i~~ 264 (514)
+|.+++.+.++++.++.++..-+..+....+..
T Consensus 568 sf~~g~i~~l~~~~~v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 568 SFNSGVIAGLAHNKTVVESLQGGQECARALLST 600 (614)
T ss_pred ccccceeehhhcCcchHhhccccHHHHHHHHhc
Confidence 999999999999999999999887776555544
No 210
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.91 E-value=0.0014 Score=61.25 Aligned_cols=161 Identities=17% Similarity=0.113 Sum_probs=93.4
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhhc--CceEEEcCcHH----HHHhCCCCeEEeCCCCCCHHHH-
Q 010244 323 AVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCVH--GVPLLINDRID----IALACDADGVHLGQSDMPARTA- 394 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~v~~~~~----~a~~~ga~gvhl~~~~~~~~~~- 394 (514)
-++.+.+.|++++=+=....+++.. .+.++.+....... -+-++++.+++ ++.+.+.+.|+|.... +...+
T Consensus 15 da~~~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e-~~~~~~ 93 (210)
T PRK01222 15 DAEAAAELGADAIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDE-TPEFCR 93 (210)
T ss_pred HHHHHHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC-CHHHHH
Confidence 4667778898877664322233322 23444454433321 23456676654 4456789999996543 33333
Q ss_pred --HhhcCCCcEEEEecCCHHHHHHhh--hCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHcCCCCEEEECCCCcccH
Q 010244 395 --RALLGPDKIIGVSCKTPEEAHQAW--IDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLASKLPVVAIGGIGISNA 469 (514)
Q Consensus 395 --~~~~~~~~~ig~s~~~~~e~~~a~--~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~ 469 (514)
+...+...+--..+.+..++..+. ...+||+++-...+ ...+ .....|+.+. ..++.|++..|||+++|+
T Consensus 94 ~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~--~~GGtG~~~dw~~l~---~~~~~p~~LAGGi~peNv 168 (210)
T PRK01222 94 QLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVG--LPGGTGKTFDWSLLP---AGLAKPWILAGGLNPDNV 168 (210)
T ss_pred HHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCC--CCCCCCCccchHHhh---hccCCCEEEECCCCHHHH
Confidence 332223334344555544444332 23689987743222 1111 1234566551 223679999999999999
Q ss_pred HHHHHC-CCCCCceEEEeecccCC
Q 010244 470 SDVMKI-GVSNLKGVAVVSALFDR 492 (514)
Q Consensus 470 ~~~~~~-Ga~~~~gva~~~~i~~~ 492 (514)
.++++. +.. ||=+.|.+-..
T Consensus 169 ~~ai~~~~p~---gvDvsSgvE~~ 189 (210)
T PRK01222 169 AEAIRQVRPY---GVDVSSGVESA 189 (210)
T ss_pred HHHHHhcCCC---EEEecCceECC
Confidence 999874 899 99999999853
No 211
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.91 E-value=0.00031 Score=68.56 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=83.5
Q ss_pred CCCcEE-EEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC
Q 010244 399 GPDKII-GVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG 476 (514)
Q Consensus 399 ~~~~~i-g~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G 476 (514)
..+..+ -+.+.|+.+++++.++|+ +.+.|.-.... .+......+.++.+.+..++||+.-+||. ++++..++++|
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~g~--~avmPl~~pIG-sg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDAGA--VAVMPLGAPIG-SGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhcCC--EEEeecccccc-CCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 345555 344558999999999999 54444221111 12223367899999988899999999996 89999999999
Q ss_pred CCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 477 VSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 477 a~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
++ ||-+-|++.+++||..++++|+..+..-+
T Consensus 272 ad---gVL~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 272 CD---GVLMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CC---EEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999998653
No 212
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.89 E-value=0.00047 Score=64.39 Aligned_cols=106 Identities=21% Similarity=0.171 Sum_probs=83.4
Q ss_pred hcCCCcEEEEecC-CHHHHHHhhhCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHH
Q 010244 397 LLGPDKIIGVSCK-TPEEAHQAWIDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDV 472 (514)
Q Consensus 397 ~~~~~~~ig~s~~-~~~e~~~a~~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~ 472 (514)
....+..+-.=|+ ++.-+++..+.|+..|-- +|+-. +........|+.+++..++||+.-+||. ++++..+
T Consensus 133 Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS-----g~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~A 207 (267)
T CHL00162 133 LVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS-----GQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQA 207 (267)
T ss_pred HHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC-----CCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHH
Confidence 3344555554454 788899999999987732 22221 1222345788889998899999999996 8999999
Q ss_pred HHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 473 MKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
+++|++ ||-+-|+|..++||.+.++.++.++..-+
T Consensus 208 mElGaD---gVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 208 MELGAS---GVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHcCCC---EEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999988643
No 213
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.89 E-value=0.0011 Score=63.15 Aligned_cols=168 Identities=22% Similarity=0.191 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCH---------------------HHHHHHHHHHHHHHhhcCceEEEc--------
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADT---------------------RGFLEAAKACLQICCVHGVPLLIN-------- 368 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~v~-------- 368 (514)
+...+.+..+.++|+++++|=.+-.++ ++..++++++++ ...++++++.
T Consensus 31 e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~--~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRA--KGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--cCCCCCEEEEEeccHHHH
Confidence 578889999999999999996664442 111222222221 1134456542
Q ss_pred ----CcHHHHHhCCCCeEEeCCCCCC----HHHHHhhcCCCcEEEEecCCHHH-HHHhhhCCCcEEEeccccC-CCCCCC
Q 010244 369 ----DRIDIALACDADGVHLGQSDMP----ARTARALLGPDKIIGVSCKTPEE-AHQAWIDGANYIGCGGVYP-TNTKAN 438 (514)
Q Consensus 369 ----~~~~~a~~~ga~gvhl~~~~~~----~~~~~~~~~~~~~ig~s~~~~~e-~~~a~~~g~d~v~~~~vf~-t~~k~~ 438 (514)
..++.+.+.|.||+-++.--.+ .....+.++.+.+.-++-.|.++ +.+-.+..-.|+.+-.... |.....
T Consensus 109 ~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~ 188 (265)
T COG0159 109 YGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNP 188 (265)
T ss_pred hhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcc
Confidence 2466888999999998654322 12233345566677777776655 3333333334444434333 222222
Q ss_pred CccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 439 NLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 439 ~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
....-.+.++++++..++|++.==||+ ++++.++.+. |+ ||.+||+|.+
T Consensus 189 ~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-AD---GVIVGSAiV~ 238 (265)
T COG0159 189 VSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-AD---GVIVGSAIVK 238 (265)
T ss_pred cchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CC---eEEEcHHHHH
Confidence 222234778888888899999998996 8999999999 99 9999999983
No 214
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.85 E-value=0.00079 Score=65.95 Aligned_cols=162 Identities=17% Similarity=0.114 Sum_probs=103.8
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----C---cHHHHHh--CCCCeEEeCCCCC-
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----D---RIDIALA--CDADGVHLGQSDM- 389 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~---~~~~a~~--~ga~gvhl~~~~~- 389 (514)
.+....+.+.|.-.+ -.|..+.+++.+.++...... ...+.+. + .++...+ .++|.+.+...+.
T Consensus 60 ~~mA~~la~~g~~~~--iHk~~~~e~~~~fv~~~~~~~---~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGh 134 (346)
T PRK05096 60 FEMAKALASFDILTA--VHKHYSVEEWAAFVNNSSADV---LKHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGY 134 (346)
T ss_pred HHHHHHHHHCCCeEE--EecCCCHHHHHHHHHhccccc---cceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCc
Confidence 345555556663333 356677787777766554221 2233332 2 2333344 4889887766553
Q ss_pred ------CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEe----ccccCCCCCCCCccCCHHHHHHH---H---Hc
Q 010244 390 ------PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGC----GGVYPTNTKANNLTVGLDGLKTV---C---LA 453 (514)
Q Consensus 390 ------~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~----~~vf~t~~k~~~~~~g~~~l~~~---~---~~ 453 (514)
.+..+|+.++.-.+++-.+-|++.++...+.|||.+-+ |.+--|..+.+ .|...+..+ + ..
T Consensus 135 s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtG---vG~PQltAV~~~a~~a~~ 211 (346)
T PRK05096 135 SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTG---VGYPQLSAVIECADAAHG 211 (346)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccc---cChhHHHHHHHHHHHHHH
Confidence 24456666654556677788999999999999999754 23334433322 344333333 2 33
Q ss_pred CCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 454 SKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 454 ~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
.++||+|-|||. ..++...+.+||+ .|-+||.|-..+
T Consensus 212 ~gvpiIADGGi~~sGDI~KAlaaGAd---~VMlGsllAGt~ 249 (346)
T PRK05096 212 LGGQIVSDGGCTVPGDVAKAFGGGAD---FVMLGGMLAGHE 249 (346)
T ss_pred cCCCEEecCCcccccHHHHHHHcCCC---EEEeChhhcCcc
Confidence 589999999997 7899999999999 999999887543
No 215
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.85 E-value=0.00024 Score=71.89 Aligned_cols=83 Identities=25% Similarity=0.296 Sum_probs=59.4
Q ss_pred EecCCHHHHHHhhhCCCcEEEeccccCCCCCCC--CccCCHHHH---HHHHHc-------C---CCCEEEECCCC-cccH
Q 010244 406 VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKAN--NLTVGLDGL---KTVCLA-------S---KLPVVAIGGIG-ISNA 469 (514)
Q Consensus 406 ~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~--~~~~g~~~l---~~~~~~-------~---~~pv~a~GGi~-~~~~ 469 (514)
-.+.|++.++++.+.|+|.|.+| ..+...+.. ....|...+ .+.++. . ++||+|.|||. ..++
T Consensus 193 G~V~t~e~A~~l~~aGAD~V~VG-~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~di 271 (368)
T PRK08649 193 GGCVTYTTALHLMRTGAAGVLVG-IGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDI 271 (368)
T ss_pred eCCCCHHHHHHHHHcCCCEEEEC-CCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHH
Confidence 46889999999999999999886 333321111 112233333 333211 1 59999999995 8899
Q ss_pred HHHHHCCCCCCceEEEeecccCC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
..++.+||+ +|.+|+.|...
T Consensus 272 akAlalGAd---~Vm~Gs~fa~t 291 (368)
T PRK08649 272 AKAIACGAD---AVMLGSPLARA 291 (368)
T ss_pred HHHHHcCCC---eecccchhccc
Confidence 999999999 99999999854
No 216
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.85 E-value=0.0011 Score=63.27 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=109.1
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE-----cCcHHHHHhCCCCeEEeCCCCCC---
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI-----NDRIDIALACDADGVHLGQSDMP--- 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-----~~~~~~a~~~ga~gvhl~~~~~~--- 390 (514)
+-.+.++...+.|++++|+=+=+.....-.+.++++ ++ .+.++-+ .++++...+.|++.|-+++....
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i---~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~ 119 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEAL---RA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQ 119 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHH---Hh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCC
Confidence 345677888889999999866544222223333333 33 3444433 35677888999999999874321
Q ss_pred --H---HHHHhhcCC-CcEEEEec-------------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCH
Q 010244 391 --A---RTARALLGP-DKIIGVSC-------------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGL 444 (514)
Q Consensus 391 --~---~~~~~~~~~-~~~ig~s~-------------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~ 444 (514)
+ ..+.+.+++ ...+++.+ .++.| +.+..+.|++.+++.-+-...+ .....+
T Consensus 120 ~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGt---l~G~d~ 196 (262)
T PLN02446 120 IDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGK---RLGIDE 196 (262)
T ss_pred CCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCc---ccCCCH
Confidence 2 222233322 22333222 25667 5788889999997766554333 244578
Q ss_pred HHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC--CCCCceEEEeecc--cC
Q 010244 445 DGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG--VSNLKGVAVVSAL--FD 491 (514)
Q Consensus 445 ~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G--a~~~~gva~~~~i--~~ 491 (514)
+.++++++..++||+|.||++ .+++.++.+.| .. |+.+|+++ +.
T Consensus 197 el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~---gvIvGkAl~~y~ 245 (262)
T PLN02446 197 ELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRV---DVTVGSALDIFG 245 (262)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCE---EEEEEeeHHHhC
Confidence 999999998999999999997 79999999985 56 99999999 64
No 217
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.84 E-value=0.00011 Score=65.82 Aligned_cols=86 Identities=28% Similarity=0.329 Sum_probs=65.9
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHH---c--CCCCEEEECCCCc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCL---A--SKLPVVAIGGIGI 466 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~---~--~~~pv~a~GGi~~ 466 (514)
..+++..+....+.+-+.|.+|+.+|.+.|+|.|-+=. ..++.++++.+ . ..+.+.+.||||+
T Consensus 71 ~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~------------~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~ 138 (169)
T PF01729_consen 71 KAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDN------------MSPEDLKEAVEELRELNPRVKIEASGGITL 138 (169)
T ss_dssp HHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-------------CHHHHHHHHHHHHHHTTTSEEEEESSSST
T ss_pred HHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecC------------cCHHHHHHHHHHHhhcCCcEEEEEECCCCH
Confidence 34565555555588999999999999999999997654 24566666655 2 2688999999999
Q ss_pred ccHHHHHHCCCCCCceEEEeecccCC
Q 010244 467 SNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 467 ~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+|+.++.+.|++ .+.+|+....+
T Consensus 139 ~ni~~ya~~gvD---~isvg~~~~~a 161 (169)
T PF01729_consen 139 ENIAEYAKTGVD---VISVGSLTHSA 161 (169)
T ss_dssp TTHHHHHHTT-S---EEEECHHHHSB
T ss_pred HHHHHHHhcCCC---EEEcChhhcCC
Confidence 999999999999 99999876543
No 218
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.83 E-value=0.00017 Score=68.45 Aligned_cols=167 Identities=25% Similarity=0.299 Sum_probs=107.8
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCC---
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDM--- 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~--- 389 (514)
+..+.++..-+.|++.+++=+=+...+........+.++++..+.++.+.. +++...+.|++.|.++....
T Consensus 30 dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 30 DPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDP 109 (229)
T ss_dssp CHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCC
T ss_pred CHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhch
Confidence 445677777789999999855321100111223445566777788998843 56778899999999987422
Q ss_pred C-HHHHHhhcCC-CcEEEEe----------------cCCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHH
Q 010244 390 P-ARTARALLGP-DKIIGVS----------------CKTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTV 450 (514)
Q Consensus 390 ~-~~~~~~~~~~-~~~ig~s----------------~~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~ 450 (514)
. ..++...++. ..++++. ..++.| +.+..+.|+..+++.-+-.--+. ...+++.++++
T Consensus 110 ~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~---~G~d~~~~~~l 186 (229)
T PF00977_consen 110 ELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTM---QGPDLELLKQL 186 (229)
T ss_dssp HHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTS---SS--HHHHHHH
T ss_pred hHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCc---CCCCHHHHHHH
Confidence 1 1222333232 2222222 124555 56678999999988666554333 33567889999
Q ss_pred HHcCCCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccC
Q 010244 451 CLASKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 451 ~~~~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
++..++|+++.||| +.+++.++.+.|++ |+.++++|+.
T Consensus 187 ~~~~~~~viasGGv~~~~Dl~~l~~~G~~---gvivg~al~~ 225 (229)
T PF00977_consen 187 AEAVNIPVIASGGVRSLEDLRELKKAGID---GVIVGSALHE 225 (229)
T ss_dssp HHHHSSEEEEESS--SHHHHHHHHHTTEC---EEEESHHHHT
T ss_pred HHHcCCCEEEecCCCCHHHHHHHHHCCCc---EEEEehHhhC
Confidence 88889999999999 58999999999999 9999999874
No 219
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=97.82 E-value=0.0012 Score=62.82 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=77.6
Q ss_pred HHHHHhCCCCeE--EeCCCCCCHHHHHhhc---CCCcEEEEecC---CHHHH-----------------HHhhhCCCcEE
Q 010244 371 IDIALACDADGV--HLGQSDMPARTARALL---GPDKIIGVSCK---TPEEA-----------------HQAWIDGANYI 425 (514)
Q Consensus 371 ~~~a~~~ga~gv--hl~~~~~~~~~~~~~~---~~~~~ig~s~~---~~~e~-----------------~~a~~~g~d~v 425 (514)
++.+.++|++.+ |............+.. ....++++.+. +.+++ +.+.+.|+|-+
T Consensus 73 i~~~~~~gad~itvH~~ag~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgv 152 (230)
T PRK00230 73 VRALAKLGVDMVNVHASGGPRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGV 152 (230)
T ss_pred HHHHHHcCCCEEEEcccCCHHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 334678899965 6544433222222221 22457776543 22333 33456788876
Q ss_pred EeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcc-----------cHHHHHHCCCCCCceEEEeecccCCC
Q 010244 426 GCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGIS-----------NASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 426 ~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~-----------~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
..++ .+. +.+++.+ +-.+...+||.++ +..++++.|++ ++.+||+||+++
T Consensus 153 v~~~------------~~~---~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad---~iVvGR~I~~a~ 214 (230)
T PRK00230 153 VCSA------------QEA---AAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSD---YIVVGRPITQAA 214 (230)
T ss_pred EeCh------------HHH---HHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCC---EEEECCcccCCC
Confidence 4442 123 3444443 3445667999876 78999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 010244 494 CILPESKKLHAVLMD 508 (514)
Q Consensus 494 ~~~~~~~~~~~~~~~ 508 (514)
||.+.++++++.+..
T Consensus 215 dP~~~a~~i~~~i~~ 229 (230)
T PRK00230 215 DPAAAYEAILAEIAG 229 (230)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988753
No 220
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.82 E-value=0.00054 Score=71.80 Aligned_cols=132 Identities=19% Similarity=0.143 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
++..+.++.+++.|++.|.+-..+.......+.++++++ .
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~----------------------------------------~ 263 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA----------------------------------------L 263 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH----------------------------------------H
Confidence 345667777777777777776555544444444444432 1
Q ss_pred cCCCcEEEEe-cCCHHHHHHhhhCCCcEEEe----ccccCCCCCCCCccCCHHHHHHHH---HcCCCCEEEECCCC-ccc
Q 010244 398 LGPDKIIGVS-CKTPEEAHQAWIDGANYIGC----GGVYPTNTKANNLTVGLDGLKTVC---LASKLPVVAIGGIG-ISN 468 (514)
Q Consensus 398 ~~~~~~ig~s-~~~~~e~~~a~~~g~d~v~~----~~vf~t~~k~~~~~~g~~~l~~~~---~~~~~pv~a~GGi~-~~~ 468 (514)
+ ++..+.+. |.|.++++.+.+.|+|+|-+ |.++.|..-.+.....+..+.+++ +..++||+|.|||. +.+
T Consensus 264 ~-~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~d 342 (475)
T TIGR01303 264 D-LGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRD 342 (475)
T ss_pred C-CCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHH
Confidence 1 12222222 77899999999999999875 344544322221111122222222 23489999999996 899
Q ss_pred HHHHHHCCCCCCceEEEeecccCCC
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+..++.+||+ .|.+|+.|-..+
T Consensus 343 i~kala~GA~---~vm~g~~~ag~~ 364 (475)
T TIGR01303 343 VALALAAGAS---NVMVGSWFAGTY 364 (475)
T ss_pred HHHHHHcCCC---EEeechhhcccc
Confidence 9999999999 999999987543
No 221
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.81 E-value=0.00042 Score=68.89 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=44.6
Q ss_pred cCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 441 TVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 441 ~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+..++.++++++.+++||++.||| +++++.+++.+||+ +|.++++++..+
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd---~V~igr~ll~~P 270 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGAS---AVQVGTANFYDP 270 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCC---ceeEcHHHhcCc
Confidence 356888999988889999999999 59999999999999 999999999733
No 222
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.79 E-value=0.00063 Score=68.48 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCC-CCCCceEEEeecccCCC
Q 010244 415 HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIG-VSNLKGVAVVSALFDRE 493 (514)
Q Consensus 415 ~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~G-a~~~~gva~~~~i~~~~ 493 (514)
..+.+.|+||+-++.-..... .....++..+++++.+++||++.|||+++.+.++++.| ++ +|++++.++..+
T Consensus 248 ~~l~~~g~d~i~vs~g~~~~~---~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D---~V~~gR~~ladP 321 (338)
T cd02933 248 KELNKRGLAYLHLVEPRVAGN---PEDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKAD---LVAFGRPFIANP 321 (338)
T ss_pred HHHHHcCCcEEEEecCCCCCc---ccccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCC---EEEeCHhhhhCc
Confidence 455578999998854322111 13456788888998889999999999999999999986 88 999999999877
Q ss_pred CHHHH
Q 010244 494 CILPE 498 (514)
Q Consensus 494 ~~~~~ 498 (514)
+....
T Consensus 322 ~~~~k 326 (338)
T cd02933 322 DLVER 326 (338)
T ss_pred CHHHH
Confidence 65443
No 223
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.78 E-value=0.0041 Score=57.45 Aligned_cols=175 Identities=23% Similarity=0.205 Sum_probs=112.0
Q ss_pred HHHHhCCCCEEEEEcC-------CCCHHHHHHHHHHHHHHHhh----cCceEEEcCc---HHHHHhCCCCeEEeCCC---
Q 010244 325 KAALEGGATIIQLREK-------DADTRGFLEAAKACLQICCV----HGVPLLINDR---IDIALACDADGVHLGQS--- 387 (514)
Q Consensus 325 ~~~~~~Gv~~v~lr~~-------~~~~~~~~~~~~~~~~~~~~----~~~~l~v~~~---~~~a~~~ga~gvhl~~~--- 387 (514)
.++.++|++.+.+-.. +.+++.......-+.++.+. .|+.++-|+. +.+|...||+++-..+.
T Consensus 41 ~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~ 120 (263)
T COG0434 41 AALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGA 120 (263)
T ss_pred HHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEEEeeece
Confidence 3455789999998442 33344433333333344333 5566666774 45777889998853321
Q ss_pred ------CC-----CHHHHHhhcCCCcEEEEecC----------CHHHHH-H-hhhCCCcEEEeccccCCCCCCCCccCCH
Q 010244 388 ------DM-----PARTARALLGPDKIIGVSCK----------TPEEAH-Q-AWIDGANYIGCGGVYPTNTKANNLTVGL 444 (514)
Q Consensus 388 ------~~-----~~~~~~~~~~~~~~ig~s~~----------~~~e~~-~-a~~~g~d~v~~~~vf~t~~k~~~~~~g~ 444 (514)
-+ +....|..++....+-+.+| +.+|+. . ...-++|.|+++.--. ..+..+
T Consensus 121 ~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~T------G~~~d~ 194 (263)
T COG0434 121 YATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRT------GSPPDL 194 (263)
T ss_pred EecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccC------CCCCCH
Confidence 11 12233444444444444443 566643 3 3345599998865221 233578
Q ss_pred HHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCC---CH--HHHHHHHHHHHHHH
Q 010244 445 DGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRE---CI--LPESKKLHAVLMDA 509 (514)
Q Consensus 445 ~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~---~~--~~~~~~~~~~~~~~ 509 (514)
+.|+..++..++||++--|++++|+.++++. ++ |+.+++.|-... +| .+++++|.+..++.
T Consensus 195 ~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~-ad---G~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~~~ 260 (263)
T COG0434 195 EELKLAKEAVDTPVLVGSGVNPENIEELLKI-AD---GVIVGTSLKKGGVTWNPVDLERVRRFVEAARRL 260 (263)
T ss_pred HHHHHHHhccCCCEEEecCCCHHHHHHHHHH-cC---ceEEEEEEccCCEecCccCHHHHHHHHHHHHHh
Confidence 9999999988999999999999999999999 99 999999886432 22 45677777776654
No 224
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.78 E-value=0.00094 Score=66.32 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=62.2
Q ss_pred HHHhhhCCCcEEEeccccCC-----CC-CC-------CCc-----cCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHH
Q 010244 414 AHQAWIDGANYIGCGGVYPT-----NT-KA-------NNL-----TVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMK 474 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t-----~~-k~-------~~~-----~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~ 474 (514)
++.+.+.|+|++.++.-+.. .+ ++ +.. +..++.+.++++..++||++.||| +++++.+++.
T Consensus 175 a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~ 254 (300)
T TIGR01037 175 AKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLM 254 (300)
T ss_pred HHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH
Confidence 55677899999987422111 11 00 111 122467778888789999999999 5899999999
Q ss_pred CCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 475 IGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
+||+ +|.++++++... ..++++++.+.+.
T Consensus 255 ~GAd---~V~igr~~l~~p---~~~~~i~~~l~~~ 283 (300)
T TIGR01037 255 AGAS---AVQVGTAVYYRG---FAFKKIIEGLIAF 283 (300)
T ss_pred cCCC---ceeecHHHhcCc---hHHHHHHHHHHHH
Confidence 9999 999999999654 3445555554443
No 225
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.78 E-value=0.00047 Score=73.05 Aligned_cols=88 Identities=26% Similarity=0.281 Sum_probs=62.1
Q ss_pred EEEEecCCHHHHHHhhhCCCcEEEecc----ccCCCCCCCCccCCHHHHHHHHHc---CCCCEEEECCCC-cccHHHHHH
Q 010244 403 IIGVSCKTPEEAHQAWIDGANYIGCGG----VYPTNTKANNLTVGLDGLKTVCLA---SKLPVVAIGGIG-ISNASDVMK 474 (514)
Q Consensus 403 ~ig~s~~~~~e~~~a~~~g~d~v~~~~----vf~t~~k~~~~~~g~~~l~~~~~~---~~~pv~a~GGi~-~~~~~~~~~ 474 (514)
++...+-|.++++.+.++|+|+|.+|- +..|....+.....++.+.++++. .++||+|.|||. +.++..++.
T Consensus 272 vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla 351 (486)
T PRK05567 272 IIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA 351 (486)
T ss_pred EEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH
Confidence 334567789999999999999997642 111111111111234556555543 479999999996 899999999
Q ss_pred CCCCCCceEEEeecccCCC
Q 010244 475 IGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~~~~ 493 (514)
+||+ .|.+|+.|....
T Consensus 352 ~GA~---~v~~G~~~a~~~ 367 (486)
T PRK05567 352 AGAS---AVMLGSMLAGTE 367 (486)
T ss_pred hCCC---EEEECccccccc
Confidence 9999 999999998653
No 226
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.77 E-value=0.00091 Score=67.41 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=54.8
Q ss_pred HHH-HHHhhhCCCcEEEeccccCCCC-----CC---C--C-----ccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHH
Q 010244 411 PEE-AHQAWIDGANYIGCGGVYPTNT-----KA---N--N-----LTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVM 473 (514)
Q Consensus 411 ~~e-~~~a~~~g~d~v~~~~vf~t~~-----k~---~--~-----~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~ 473 (514)
..+ ++.+.+.|+|.|.+..-+.... .. + . .+..++.+.++++..++||++.|||. .+++.+++
T Consensus 179 ~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l 258 (334)
T PRK07565 179 LANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKML 258 (334)
T ss_pred HHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHH
Confidence 344 4556789999997743221110 00 0 0 01224556666666789999999996 89999999
Q ss_pred HCCCCCCceEEEeecccCC
Q 010244 474 KIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 474 ~~Ga~~~~gva~~~~i~~~ 492 (514)
.+||+ +|.++++++..
T Consensus 259 ~aGA~---~V~v~t~~~~~ 274 (334)
T PRK07565 259 LAGAD---VVMIASALLRH 274 (334)
T ss_pred HcCCC---ceeeehHHhhh
Confidence 99999 99999999963
No 227
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.74 E-value=0.00021 Score=75.40 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=74.9
Q ss_pred HHHhCCCCeEEeCCCCC-------CHHHHHhhcCCCcEEEE-ecCCHHHHHHhhhCCCcEEEec--cccCCCCC--CCCc
Q 010244 373 IALACDADGVHLGQSDM-------PARTARALLGPDKIIGV-SCKTPEEAHQAWIDGANYIGCG--GVYPTNTK--ANNL 440 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~-------~~~~~~~~~~~~~~ig~-s~~~~~e~~~a~~~g~d~v~~~--~vf~t~~k--~~~~ 440 (514)
...+.|++.+|+...+. ....+++.+ ++..+++ .+.|+++++.+.++|+|+|.+| |-.-..+. .+..
T Consensus 248 ~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g 326 (495)
T PTZ00314 248 ALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-PHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVG 326 (495)
T ss_pred HHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-CCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCC
Confidence 33455666666554221 133444443 3566666 6679999999999999999653 21111111 1111
Q ss_pred cCCHHH---HHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 441 TVGLDG---LKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 441 ~~g~~~---l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
...+.. +.++++..++||+|.|||. +.++..++.+||+ +|.+|+.|...+
T Consensus 327 ~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~---~Vm~G~~~a~~~ 380 (495)
T PTZ00314 327 RPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGAD---CVMLGSLLAGTE 380 (495)
T ss_pred CChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCC---EEEECchhcccc
Confidence 112233 3334444589999999995 8999999999999 999999998643
No 228
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.0029 Score=58.42 Aligned_cols=165 Identities=21% Similarity=0.188 Sum_probs=99.7
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhh-cCceEEEcCcH----HHHHhCCCCeEEeCCCCCCHHHHH
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCV-HGVPLLINDRI----DIALACDADGVHLGQSDMPARTAR 395 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~v~~~~----~~a~~~ga~gvhl~~~~~~~~~~~ 395 (514)
+-++.+.+.|++.+=+=.-..+++.. .+.++++...... .-+-+++|.+. +++.+.+.+.|.|.... +...++
T Consensus 13 eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-~~~~~~ 91 (208)
T COG0135 13 EDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-DPEYID 91 (208)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-CHHHHH
Confidence 45677888998876553332232221 2233334333321 12455677766 56778889999885543 334444
Q ss_pred hhcC---CCcEEEEecCCH--HHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHH
Q 010244 396 ALLG---PDKIIGVSCKTP--EEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNAS 470 (514)
Q Consensus 396 ~~~~---~~~~ig~s~~~~--~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~ 470 (514)
+... ...+--.++... .+.......-+|++++=.--+...........|+.+... ....|++..||+|++|+.
T Consensus 92 ~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~ 169 (208)
T COG0135 92 QLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLNPDNVA 169 (208)
T ss_pred HHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCCHHHHH
Confidence 3332 344444555543 234444455688887643222111111344678777665 357899999999999999
Q ss_pred HHHHCCC-CCCceEEEeecccCC
Q 010244 471 DVMKIGV-SNLKGVAVVSALFDR 492 (514)
Q Consensus 471 ~~~~~Ga-~~~~gva~~~~i~~~ 492 (514)
++++.+. . ||=+.|.+=.+
T Consensus 170 ~ai~~~~p~---gvDvSSGVE~~ 189 (208)
T COG0135 170 EAIALGPPY---GVDVSSGVESS 189 (208)
T ss_pred HHHHhcCCc---eEEeccccccC
Confidence 9999988 9 99999999755
No 229
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=97.70 E-value=0.0014 Score=64.71 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=101.2
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----C---cHHHHHhCC--CCeEEeCCCCC--
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----D---RIDIALACD--ADGVHLGQSDM-- 389 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~---~~~~a~~~g--a~gvhl~~~~~-- 389 (514)
+..+.+-+.|.-.+..| .+.+++.+..++.. ..+..+.+. + .++...+.| +|.+-+...+.
T Consensus 49 ~LA~~a~~~G~~~i~hK---~~~E~~~sfvrk~k----~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s 121 (321)
T TIGR01306 49 KLAEQLAENGYFYIMHR---FDEESRIPFIKDMQ----ERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS 121 (321)
T ss_pred HHHHHHHHcCCEEEEec---CCHHHHHHHHHhcc----ccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch
Confidence 33444555677777666 36666666544332 222322221 1 233444556 67776655332
Q ss_pred -----CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEec--cccCCCCCC----CCccCCHHHHHHHHHcCCCCE
Q 010244 390 -----PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG--GVYPTNTKA----NNLTVGLDGLKTVCLASKLPV 458 (514)
Q Consensus 390 -----~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~--~vf~t~~k~----~~~~~g~~~l~~~~~~~~~pv 458 (514)
....+++.++...++.-.+.|.+.++.+.+.|+|.|.+| |-....+.. +.+..++..+.++++..++||
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pV 201 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPI 201 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeE
Confidence 133455555433344444779999999999999999775 222111111 112223457888888779999
Q ss_pred EEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 459 VAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 459 ~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+|.|||. ..++.+++.+||+ +|.+++.|-..+
T Consensus 202 IadGGIr~~~Di~KALa~GAd---~Vmig~~~ag~~ 234 (321)
T TIGR01306 202 IADGGIRTHGDIAKSIRFGAS---MVMIGSLFAGHE 234 (321)
T ss_pred EEECCcCcHHHHHHHHHcCCC---EEeechhhcCcc
Confidence 9999996 7899999999999 999999887543
No 230
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.68 E-value=0.0018 Score=66.54 Aligned_cols=77 Identities=22% Similarity=0.074 Sum_probs=56.8
Q ss_pred CHHHHHHhhhCC-CcEEEeccccCCCCCCCCccCCHHHHHHHH---HcC--------CCCEEEECCC-CcccHHHHHHCC
Q 010244 410 TPEEAHQAWIDG-ANYIGCGGVYPTNTKANNLTVGLDGLKTVC---LAS--------KLPVVAIGGI-GISNASDVMKIG 476 (514)
Q Consensus 410 ~~~e~~~a~~~g-~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~---~~~--------~~pv~a~GGi-~~~~~~~~~~~G 476 (514)
|++|+..|.+.| +|.|++. .....|.+.- ..+..+..+. +.+ ++||+|.||| |++.+..++.+|
T Consensus 170 t~eEA~~a~~~g~aD~Ivve--~EAGGHtg~~-~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLG 246 (444)
T TIGR02814 170 TREEAELARRVPVADDICVE--ADSGGHTDNR-PLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLG 246 (444)
T ss_pred CHHHHHHHHhCCCCcEEEEe--ccCCCCCCCC-cHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcC
Confidence 778888899998 5999886 4444444311 1234444443 333 6899999999 689999999999
Q ss_pred CCCCceEEEeecccCC
Q 010244 477 VSNLKGVAVVSALFDR 492 (514)
Q Consensus 477 a~~~~gva~~~~i~~~ 492 (514)
|+ +|.+||.|..+
T Consensus 247 Ad---gV~~GT~flat 259 (444)
T TIGR02814 247 AD---FIVTGSVNQCT 259 (444)
T ss_pred Cc---EEEeccHHHhC
Confidence 99 99999998854
No 231
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=97.68 E-value=0.0013 Score=62.00 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=79.1
Q ss_pred HHHHhCCCCeE--EeCCCCCCH-HHHHhhcCCCcEEEEecC--C-------HHH----HHHhhhCCCcEEEeccccCCCC
Q 010244 372 DIALACDADGV--HLGQSDMPA-RTARALLGPDKIIGVSCK--T-------PEE----AHQAWIDGANYIGCGGVYPTNT 435 (514)
Q Consensus 372 ~~a~~~ga~gv--hl~~~~~~~-~~~~~~~~~~~~ig~s~~--~-------~~e----~~~a~~~g~d~v~~~~vf~t~~ 435 (514)
+.+.++|||.+ |........ ..++.....+..+|+.++ + .++ +.-+.+.|++-..+.+
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~------ 147 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPA------ 147 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECC------
Confidence 55678999976 554321111 122333334556655221 1 112 2234457777553221
Q ss_pred CCCCccCCHHHHHHHHHcCCCC-EEEECCCCcc--cHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 436 KANNLTVGLDGLKTVCLASKLP-VVAIGGIGIS--NASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 436 k~~~~~~g~~~l~~~~~~~~~p-v~a~GGi~~~--~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
..++.++++++..+.+ .+..|||+++ ++.+++++|++ ++.+||+||+++||.+.+++|++.+++
T Consensus 148 ------~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aGad---~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 148 ------TRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAGAD---YVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred ------CcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcCCC---EEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 1356677777665443 3377999987 49999999999 999999999999999999999988764
No 232
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.67 E-value=9e-05 Score=70.88 Aligned_cols=140 Identities=16% Similarity=0.261 Sum_probs=90.3
Q ss_pred HHHHHHHHhCCCCEEEEEcC-----CCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHH
Q 010244 321 TDAVKAALEGGATIIQLREK-----DADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTAR 395 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~ 395 (514)
...++.+++.|++.|-+-.+ +.+..+..+.+.++.+.|++++.++++...+.-.. .. ... ....+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~-~~-------~~~-~~~~I- 148 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEE-VA-------DEK-KPDLI- 148 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHH-BS-------STT-HHHHH-
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchh-hc-------ccc-cHHHH-
Confidence 45688899999887776443 34566677888889999999999999874321111 00 000 00011
Q ss_pred hhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCC----EEEECCCC------
Q 010244 396 ALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLP----VVAIGGIG------ 465 (514)
Q Consensus 396 ~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~p----v~a~GGi~------ 465 (514)
..-++.+.+.|+|||=.+ .+.. .+......+.++++.+.+++| |.+.||++
T Consensus 149 ---------------~~a~ria~e~GaD~vKt~---tg~~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~ 209 (236)
T PF01791_consen 149 ---------------ARAARIAAELGADFVKTS---TGKP-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLR 209 (236)
T ss_dssp ---------------HHHHHHHHHTT-SEEEEE----SSS-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHH
T ss_pred ---------------HHHHHHHHHhCCCEEEec---CCcc-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHH
Confidence 223667789999999443 3211 223333456777777777899 99999994
Q ss_pred -cccHHHHHHCCC--CCCceEEEeecccCC
Q 010244 466 -ISNASDVMKIGV--SNLKGVAVVSALFDR 492 (514)
Q Consensus 466 -~~~~~~~~~~Ga--~~~~gva~~~~i~~~ 492 (514)
.+.+.+++++|+ . |+..|+.||+.
T Consensus 210 ~l~~a~~~i~aGa~~~---G~~~Gr~i~q~ 236 (236)
T PF01791_consen 210 TLEDALEFIEAGADRI---GTSSGRNIWQH 236 (236)
T ss_dssp SHHHHHHHHHTTHSEE---EEEEHHHHHTC
T ss_pred HHHHHHHHHHcCChhH---HHHHHHHHHcC
Confidence 344556669999 8 99999999963
No 233
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.64 E-value=0.0024 Score=60.70 Aligned_cols=159 Identities=14% Similarity=0.025 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----CcHHHHHhCCCCeEEeCCCCC------
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----DRIDIALACDADGVHLGQSDM------ 389 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~~~~~a~~~ga~gvhl~~~~~------ 389 (514)
.+.++...+.|++++|+=+=... . .+. +.++++..++++.+- ++++...++||+.|-+++.-.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDLg~~--n-~~~---i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~ 114 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIMLGPN--N-DDA---AKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFD 114 (253)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC--c-HHH---HHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCC
Confidence 45677788899999998665333 1 223 344455566677653 567788899999999987221
Q ss_pred --CHHHHHhhcCC-CcEEEEe--------------------cCCHH-HHHHhhhCCCcEEEeccccCCCCCCCCccCCHH
Q 010244 390 --PARTARALLGP-DKIIGVS--------------------CKTPE-EAHQAWIDGANYIGCGGVYPTNTKANNLTVGLD 445 (514)
Q Consensus 390 --~~~~~~~~~~~-~~~ig~s--------------------~~~~~-e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~ 445 (514)
...++.+.+++ ...+++. ..++. |..+..+.++..+++.-+-..-+ .....++
T Consensus 115 ~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGt---l~G~dle 191 (253)
T TIGR02129 115 LKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGL---CKGIDEE 191 (253)
T ss_pred HHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCc---cccCCHH
Confidence 12233334421 1222222 12444 54444433377776655443323 2446789
Q ss_pred HHHHHHHcCCCCEEEECCCC-cccHHHHHHC--CCCCCceEEEeecccC
Q 010244 446 GLKTVCLASKLPVVAIGGIG-ISNASDVMKI--GVSNLKGVAVVSALFD 491 (514)
Q Consensus 446 ~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~--Ga~~~~gva~~~~i~~ 491 (514)
.++++++..++||+|.||+. .+++.++.+. |.. ++.+|++++.
T Consensus 192 l~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~---~aIvG~Alf~ 237 (253)
T TIGR02129 192 LVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKV---DLTIGSALDI 237 (253)
T ss_pred HHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCC---cEEeeehHHH
Confidence 99999998999999999997 7899988665 677 8999999884
No 234
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.64 E-value=0.00044 Score=63.86 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=75.0
Q ss_pred CCcEEEEecC-CHHHHHHhhhCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHC
Q 010244 400 PDKIIGVSCK-TPEEAHQAWIDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKI 475 (514)
Q Consensus 400 ~~~~ig~s~~-~~~e~~~a~~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~ 475 (514)
.+..+-.=|+ ++--+++..+.|+..|-- +|+.. +........++.+++.+++||+..+||. ++++.+++++
T Consensus 122 eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS-----g~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMEl 196 (247)
T PF05690_consen 122 EGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS-----GRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMEL 196 (247)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT--------SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHT
T ss_pred CCCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc-----CcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHc
Confidence 3444444444 788899999999988733 22221 1222346788999988999999999996 8999999999
Q ss_pred CCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 476 GVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 476 Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
|++ +|-+-++|..+.||..++++|+..+..-+
T Consensus 197 G~d---aVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 197 GAD---AVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp T-S---EEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CCc---eeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999988643
No 235
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.63 E-value=0.00058 Score=68.91 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=86.4
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceE-EEcCcHHHHHhCCCCeEEeCCCCC-CHHHHHh
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPL-LINDRIDIALACDADGVHLGQSDM-PARTARA 396 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l-~v~~~~~~a~~~ga~gvhl~~~~~-~~~~~~~ 396 (514)
-..+.+++..++++ .+-+|....+.. + +.+.+.+.|+.+ .++...... +. + .+..++ ...+..+
T Consensus 120 l~~~ii~~vr~a~V-tvkiRl~~~~~~---e----~a~~l~eAGad~I~ihgrt~~q-~~----~-sg~~~p~~l~~~i~ 185 (369)
T TIGR01304 120 LLGERIAEVRDSGV-ITAVRVSPQNAR---E----IAPIVVKAGADLLVIQGTLVSA-EH----V-STSGEPLNLKEFIG 185 (369)
T ss_pred HHHHHHHHHHhcce-EEEEecCCcCHH---H----HHHHHHHCCCCEEEEeccchhh-hc----c-CCCCCHHHHHHHHH
Confidence 35566777777663 366676432222 2 223333455544 344433111 00 0 111211 1223333
Q ss_pred hcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCH---HHHHHHHH-------cC---CCCEEEECC
Q 010244 397 LLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGL---DGLKTVCL-------AS---KLPVVAIGG 463 (514)
Q Consensus 397 ~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~---~~l~~~~~-------~~---~~pv~a~GG 463 (514)
..+...+ +-.+.|.+++.++.+.|+|.|..|+--...+ ......+. ..+.+++. .. .+||+|.||
T Consensus 186 ~~~IPVI-~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~-~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGG 263 (369)
T TIGR01304 186 ELDVPVI-AGGVNDYTTALHLMRTGAAGVIVGPGGANTT-RLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGG 263 (369)
T ss_pred HCCCCEE-EeCCCCHHHHHHHHHcCCCEEEECCCCCccc-ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 3333333 3468899999999999999998654222111 11111122 23333321 12 399999999
Q ss_pred CC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 464 IG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 464 i~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
|. ..++..++.+||+ +|.+|+.|..+
T Consensus 264 I~tg~di~kAlAlGAd---aV~iGt~~a~a 290 (369)
T TIGR01304 264 IETSGDLVKAIACGAD---AVVLGSPLARA 290 (369)
T ss_pred CCCHHHHHHHHHcCCC---EeeeHHHHHhh
Confidence 96 8899999999999 99999999854
No 236
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.63 E-value=0.0032 Score=57.30 Aligned_cols=171 Identities=25% Similarity=0.333 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC----cHHHHHhCCCCeEEeCCCCC----
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND----RIDIALACDADGVHLGQSDM---- 389 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~----~~~~a~~~ga~gvhl~~~~~---- 389 (514)
+....++.++-.+|++++-+-- ++ ++.++ ++. ..+.++.|.. ..-.+.++|||-+-++..|-
T Consensus 27 ~~V~~i~~AA~~ggAt~vDIAa---dp-~LV~~---~~~---~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~q 96 (242)
T PF04481_consen 27 ESVAAIVKAAEIGGATFVDIAA---DP-ELVKL---AKS---LSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQ 96 (242)
T ss_pred HHHHHHHHHHHccCCceEEecC---CH-HHHHH---HHH---hCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhc
Confidence 5677778888889999996632 32 23332 222 2367888754 23356788999998887651
Q ss_pred ----C-------HHHHHhhcCCCcEEEEec-CC--HHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHH---
Q 010244 390 ----P-------ARTARALLGPDKIIGVSC-KT--PEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLK--- 448 (514)
Q Consensus 390 ----~-------~~~~~~~~~~~~~ig~s~-~~--~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~--- 448 (514)
. ..+.|..+ |+..+.+++ |. +++ +....++|+|+|-.= ..|.++|..+ .-+..++
T Consensus 97 Gr~f~a~eVL~Lt~~tR~LL-P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE--Ggtss~p~~~-g~lglIekaa 172 (242)
T PF04481_consen 97 GRRFSAEEVLALTRETRSLL-PDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE--GGTSSKPTSP-GILGLIEKAA 172 (242)
T ss_pred CCeecHHHHHHHHHHHHHhC-CCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC--CCCCCCCCCc-chHHHHHHHh
Confidence 1 12334444 566766666 43 332 556668999999431 0122233211 1112222
Q ss_pred -------HHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHH
Q 010244 449 -------TVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAV 505 (514)
Q Consensus 449 -------~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~ 505 (514)
.+.+..++||+-.-|++.-+++-.+.+||. ||++||++-+-+|...+....++.
T Consensus 173 pTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAs---GVGVGSavn~Ln~~~aMva~vr~l 233 (242)
T PF04481_consen 173 PTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGAS---GVGVGSAVNRLNDEVAMVAAVRSL 233 (242)
T ss_pred HHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCc---ccchhHHhhhcccHHHHHHHHHHH
Confidence 334456899999999999999999999999 999999999877765555444443
No 237
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.62 E-value=0.0053 Score=65.30 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=117.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCC---HHHHHHHHHHHHHHHhhcCceEEEcC-----------------cHHHHHhC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDAD---TRGFLEAAKACLQICCVHGVPLLIND-----------------RIDIALAC 377 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~---~~~~~~~~~~~~~~~~~~~~~l~v~~-----------------~~~~a~~~ 377 (514)
-+-.+.++...+.|++.+++=+=+.. ..........++++++...+++.+-+ +.+...++
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~ 346 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRS 346 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHc
Confidence 45677788888999999988665432 11222223344555666677887632 25677899
Q ss_pred CCCeEEeCCCCC----------------CHHHHHhhcCCC-cEEEEecC-------------------------------
Q 010244 378 DADGVHLGQSDM----------------PARTARALLGPD-KIIGVSCK------------------------------- 409 (514)
Q Consensus 378 ga~gvhl~~~~~----------------~~~~~~~~~~~~-~~ig~s~~------------------------------- 409 (514)
|||-|.++.... ...++.+.++.. ..+++.+.
T Consensus 347 GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (538)
T PLN02617 347 GADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQ 426 (538)
T ss_pred CCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEE
Confidence 999999987221 122333344433 33333321
Q ss_pred ------------CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHH-
Q 010244 410 ------------TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMK- 474 (514)
Q Consensus 410 ------------~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~- 474 (514)
++.| +++..++|+.-+++..+-...++.+ ..++.++.+++..++||+|.||+. ++++.++++
T Consensus 427 v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G---~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~ 503 (538)
T PLN02617 427 CTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKG---FDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSK 503 (538)
T ss_pred EEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccC---cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhc
Confidence 2223 6778899999998877665444433 468899999988999999999996 899999887
Q ss_pred CCCCCCceEEEeecccCCCCHHHHHHH
Q 010244 475 IGVSNLKGVAVVSALFDRECILPESKK 501 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~~~~~~~~~~~~ 501 (514)
.|++ +++.+|-|...+.+...+++
T Consensus 504 ~~~~---a~~aa~~fh~~~~~~~~~k~ 527 (538)
T PLN02617 504 TNAS---AALAAGIFHRKEVPISSVKE 527 (538)
T ss_pred CCcc---EEEEEeeeccCCCCHHHHHH
Confidence 6688 98888877655544444443
No 238
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.61 E-value=0.00045 Score=63.13 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=81.4
Q ss_pred HHHHhCCCCeE----EeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCcc------
Q 010244 372 DIALACDADGV----HLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLT------ 441 (514)
Q Consensus 372 ~~a~~~ga~gv----hl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~------ 441 (514)
++..++|.|.+ .|+..|......+..+..+.. +.+.|+-|+.+-...|+..| .||..+..
T Consensus 93 ~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFV--cGarnLgEAlRRI~EGAaMI--------RTKGEaGTGnv~eA 162 (296)
T COG0214 93 QILEALGVDMIDESEVLTPADEEFHINKWKFTVPFV--CGARNLGEALRRISEGAAMI--------RTKGEAGTGNVVEA 162 (296)
T ss_pred HHHHHhCCCccccccccCCCchhhhcchhhccccee--cCcCcHHHHHHHHhhhHHHH--------hcCCCCCCCcHHHH
Confidence 34557787766 333333322222333333333 44788888888778888777 22322111
Q ss_pred ------------------------------CCHHHHHHHHHcCCCC--EEEECCC-CcccHHHHHHCCCCCCceEEEeec
Q 010244 442 ------------------------------VGLDGLKTVCLASKLP--VVAIGGI-GISNASDVMKIGVSNLKGVAVVSA 488 (514)
Q Consensus 442 ------------------------------~g~~~l~~~~~~~~~p--v~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~~ 488 (514)
...+.++++++.-.+| -||.||| ||.+.....++|++ ||-+||.
T Consensus 163 VrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGad---GVFVGSG 239 (296)
T COG0214 163 VRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGAD---GVFVGSG 239 (296)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCC---eEEeccc
Confidence 1123333444333455 5899999 69999999999999 9999999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 010244 489 LFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 489 i~~~~~~~~~~~~~~~~~~~ 508 (514)
||.++||.+.++++.++..-
T Consensus 240 IFKS~~P~~~A~AIV~A~~~ 259 (296)
T COG0214 240 IFKSSNPEKRAKAIVEATTH 259 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHc
Confidence 99999999999999887653
No 239
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.61 E-value=0.00046 Score=66.86 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=67.4
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCcccH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISNA 469 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~~ 469 (514)
..+|+..+....|-+-|.|.+|+.+|.+.|+|.|.+-. ..++.++++.+.. ++.+-|.||||++|+
T Consensus 188 ~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDn------------mspe~l~~av~~~~~~~~leaSGGI~~~ni 255 (290)
T PRK06559 188 AQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDN------------MSLEQIEQAITLIAGRSRIECSGNIDMTTI 255 (290)
T ss_pred HHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhcCceEEEEECCCCHHHH
Confidence 34555444467788899999999999999999997654 3466677776654 578999999999999
Q ss_pred HHHHHCCCCCCceEEEeeccc
Q 010244 470 SDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~ 490 (514)
.++.+.|++ .|.+|+-..
T Consensus 256 ~~yA~tGVD---~Is~galth 273 (290)
T PRK06559 256 SRFRGLAID---YVSSGSLTH 273 (290)
T ss_pred HHHHhcCCC---EEEeCcccc
Confidence 999999999 998887544
No 240
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.59 E-value=0.003 Score=63.37 Aligned_cols=96 Identities=19% Similarity=0.136 Sum_probs=63.0
Q ss_pred CHHH-HHHhhhCCCcEEEeccccCCC-----C-C---------CCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHH
Q 010244 410 TPEE-AHQAWIDGANYIGCGGVYPTN-----T-K---------ANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDV 472 (514)
Q Consensus 410 ~~~e-~~~a~~~g~d~v~~~~vf~t~-----~-k---------~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~ 472 (514)
+..+ ++.+.+.|+|.+.+..-++.. + + +...+..++.+.++++..++||++.|||. .+++.+.
T Consensus 176 ~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 176 ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHH
Confidence 3444 556778999999885432111 0 0 00011234666777776789999999996 8999999
Q ss_pred HHCCCCCCceEEEeecccCC-C-CHHHHHHHHHHHHHH
Q 010244 473 MKIGVSNLKGVAVVSALFDR-E-CILPESKKLHAVLMD 508 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~~~-~-~~~~~~~~~~~~~~~ 508 (514)
+.+||+ +|.++++++.. . -+.+..+.|.+.+.+
T Consensus 256 l~aGA~---~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 256 LLAGAD---VVMTTSALLRHGPDYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHcCCC---eeEEehhhhhcCchHHHHHHHHHHHHHHH
Confidence 999999 99999999853 2 233444444444443
No 241
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.59 E-value=0.002 Score=65.06 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=70.1
Q ss_pred HHHhhcCCCcEEEEecC---------CHHHH----HHhhhCCCcEEEeccccCCCC-C-CCCccCCHHHHHHHHHcCCCC
Q 010244 393 TARALLGPDKIIGVSCK---------TPEEA----HQAWIDGANYIGCGGVYPTNT-K-ANNLTVGLDGLKTVCLASKLP 457 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~---------~~~e~----~~a~~~g~d~v~~~~vf~t~~-k-~~~~~~g~~~l~~~~~~~~~p 457 (514)
.+|+..+++..+++-.+ +++|+ ....+.|+||+-++.-..+.. + +..+...++..+.+++..++|
T Consensus 213 aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iP 292 (336)
T cd02932 213 AVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIP 292 (336)
T ss_pred HHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCC
Confidence 45566666777776422 45553 344577999997752211111 1 111233467888888888999
Q ss_pred EEEECCC-CcccHHHHHHCC-CCCCceEEEeecccCCCCHH
Q 010244 458 VVAIGGI-GISNASDVMKIG-VSNLKGVAVVSALFDRECIL 496 (514)
Q Consensus 458 v~a~GGi-~~~~~~~~~~~G-a~~~~gva~~~~i~~~~~~~ 496 (514)
|++.||| +++++.++++.| ++ .|+++++++..++..
T Consensus 293 Vi~~G~i~t~~~a~~~l~~g~aD---~V~~gR~~i~dP~~~ 330 (336)
T cd02932 293 VIAVGLITDPEQAEAILESGRAD---LVALGRELLRNPYWP 330 (336)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCC---eehhhHHHHhCccHH
Confidence 9999999 589999999998 88 999999999766643
No 242
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.59 E-value=0.00047 Score=66.73 Aligned_cols=83 Identities=22% Similarity=0.137 Sum_probs=66.6
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCcccHH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISNAS 470 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~~~ 470 (514)
.+|+..+....+-+-|.|.+|+.+|.+.|+|.|.+-. ..++.++++.+.. ..|+-|.||||++|+.
T Consensus 186 ~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn------------~s~e~l~~av~~~~~~~~leaSGGI~~~ni~ 253 (281)
T PRK06106 186 RARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDN------------MTPDTLREAVAIVAGRAITEASGRITPETAP 253 (281)
T ss_pred HHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHhCCCceEEEECCCCHHHHH
Confidence 4454444346678889999999999999999997644 3467777777654 5789999999999999
Q ss_pred HHHHCCCCCCceEEEeeccc
Q 010244 471 DVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~ 490 (514)
++.+.|++ .|.+|+-..
T Consensus 254 ~yA~tGVD---~Is~Galth 270 (281)
T PRK06106 254 AIAASGVD---LISVGWLTH 270 (281)
T ss_pred HHHhcCCC---EEEeChhhc
Confidence 99999999 998887544
No 243
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.56 E-value=0.0013 Score=62.12 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=59.0
Q ss_pred HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeec
Q 010244 411 PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSA 488 (514)
Q Consensus 411 ~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~ 488 (514)
++-++.+.+.|+|.+.+...++ +.+...|+.++++++.+ ++||++-|||. .+++.+++++||+ +|.++++
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~-----g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd---~VmvgR~ 222 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYP-----GKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGAD---FVSVARA 222 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCC-----CCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCC---eEEEcHh
Confidence 4556778899999997743222 22225699999999988 59999999996 7999999999999 9999998
Q ss_pred ccC
Q 010244 489 LFD 491 (514)
Q Consensus 489 i~~ 491 (514)
++.
T Consensus 223 ~l~ 225 (231)
T TIGR00736 223 ILK 225 (231)
T ss_pred hcc
Confidence 874
No 244
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.0028 Score=60.07 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=97.0
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCCCHH
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDMPAR 392 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~~~~ 392 (514)
+..+.++...+. ++.+++-+.+............++++++..+.++++. ++++.+.+.|++++-++....++.
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~ 109 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLE 109 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHH
Confidence 345566666666 8888885554322111011223334444567788874 356667788999999987655433
Q ss_pred HHHh---hcCCCcEEEEe---------------cCCHHHHHH-hhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc
Q 010244 393 TARA---LLGPDKIIGVS---------------CKTPEEAHQ-AWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA 453 (514)
Q Consensus 393 ~~~~---~~~~~~~ig~s---------------~~~~~e~~~-a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~ 453 (514)
.+++ .++ ...++.. -.++.|+.+ +.+. +..+++..+-..-+. .|++ ++.+.
T Consensus 110 ~l~~~~~~~g-~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~-----~G~d---~l~~~ 179 (228)
T PRK04128 110 FLEKVTSEFE-GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTL-----TGIE---EIERF 179 (228)
T ss_pred HHHHHHHHcC-CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcc-----cCHH---HHHHh
Confidence 3332 222 2333332 224555433 3333 666666554433222 3555 33333
Q ss_pred -CCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 454 -SKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 454 -~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
.++||+|.||+. .+++.++.+.|++ |+.++++|+...
T Consensus 180 ~~~~pviasGGv~~~~Dl~~l~~~g~~---gvivg~al~~g~ 218 (228)
T PRK04128 180 WGDEEFIYAGGVSSAEDVKKLAEIGFS---GVIIGKALYEGR 218 (228)
T ss_pred cCCCCEEEECCCCCHHHHHHHHHCCCC---EEEEEhhhhcCC
Confidence 479999999997 7999999999999 999999998543
No 245
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.55 E-value=0.0033 Score=63.67 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=56.2
Q ss_pred CCHHHHHHhhhCCCcEEEeccccCCCC------CC-------CCccC---CHHHHHHHHHc-CCCCEEEECCCC-cccHH
Q 010244 409 KTPEEAHQAWIDGANYIGCGGVYPTNT------KA-------NNLTV---GLDGLKTVCLA-SKLPVVAIGGIG-ISNAS 470 (514)
Q Consensus 409 ~~~~e~~~a~~~g~d~v~~~~vf~t~~------k~-------~~~~~---g~~~l~~~~~~-~~~pv~a~GGi~-~~~~~ 470 (514)
.++++++.+.+.|+|+|.++....|.- .. ..... ..+.+.++++. .++||++.|||. ..++.
T Consensus 198 ~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 198 ISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA 277 (352)
T ss_pred CcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence 456777777777888877755432210 00 00111 23466666665 489999999996 88999
Q ss_pred HHHHCCCCCCceEEEeecccCC
Q 010244 471 DVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+++.+||+ +|.+++.++..
T Consensus 278 k~l~~GAd---~v~ig~~~l~~ 296 (352)
T PRK05437 278 KALALGAD---AVGMAGPFLKA 296 (352)
T ss_pred HHHHcCCC---EEEEhHHHHHH
Confidence 99999999 99999998853
No 246
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.54 E-value=0.0062 Score=58.27 Aligned_cols=162 Identities=19% Similarity=0.095 Sum_probs=102.1
Q ss_pred HHHHHHHhCCCCEEEEEcCCCC--HHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC---
Q 010244 322 DAVKAALEGGATIIQLREKDAD--TRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP--- 390 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~--- 390 (514)
+.+...-+.|.+++++-+-+.. ...-.+.++ ++++....++.+.. +++.....|++-|-++.....
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~---~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~ 111 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLE---EVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPW 111 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCCCCCcchHHHHH---HHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHH
Confidence 4445556778888888554221 111223333 34444456777643 455678889999988775332
Q ss_pred -HHHHHhhcCCCcEEEEec------------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHH
Q 010244 391 -ARTARALLGPDKIIGVSC------------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTV 450 (514)
Q Consensus 391 -~~~~~~~~~~~~~ig~s~------------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~ 450 (514)
..++.+.++....++..+ -++.| +.+..+.|+..+++.-+-..-+. ....++.++++
T Consensus 112 ~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~---~G~d~~l~~~l 188 (243)
T TIGR01919 112 WAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLS---GGPNELLLEVV 188 (243)
T ss_pred HHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccC---CCcCHHHHHHH
Confidence 112222222222222221 13444 66777899998888766554333 33568899999
Q ss_pred HHcCCCCEEEECCCC-cccHHHHH---HCCCCCCceEEEeecccCC
Q 010244 451 CLASKLPVVAIGGIG-ISNASDVM---KIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 451 ~~~~~~pv~a~GGi~-~~~~~~~~---~~Ga~~~~gva~~~~i~~~ 492 (514)
++..++||+|.||+. .+++.++. +.|++ |+.++++|+..
T Consensus 189 ~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~---gvivg~Al~~g 231 (243)
T TIGR01919 189 AARTDAIVAASGGSSLLDDLRAIKYLDEGGVS---VAIGGKLLYAR 231 (243)
T ss_pred HhhCCCCEEEECCcCCHHHHHHHHhhccCCee---EEEEhHHHHcC
Confidence 988899999999997 58888875 45888 99999999843
No 247
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.51 E-value=0.0095 Score=56.57 Aligned_cols=162 Identities=10% Similarity=0.014 Sum_probs=102.8
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCH--HHHHHHHHHHHHHHhhcCceEEEc------CcHHHHHhCCCCeEEeCCCCCC-
Q 010244 320 ITDAVKAALEGGATIIQLREKDADT--RGFLEAAKACLQICCVHGVPLLIN------DRIDIALACDADGVHLGQSDMP- 390 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~~--~~~~~~~~~~~~~~~~~~~~l~v~------~~~~~a~~~ga~gvhl~~~~~~- 390 (514)
..+.++...+.|++.+++=+=+... ....+. +.++++..-.++.+- ++++.+.+.|++-|.+++....
T Consensus 32 P~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~---i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 32 PIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMY---IKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCcCCCcchHHH---HHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 3456777778899999986544321 111233 334443222367663 3566678899999998875432
Q ss_pred H---HHHHhhcCC-CcEEEEec---------------CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHH
Q 010244 391 A---RTARALLGP-DKIIGVSC---------------KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTV 450 (514)
Q Consensus 391 ~---~~~~~~~~~-~~~ig~s~---------------~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~ 450 (514)
+ .++.+.++. ...++..+ .++.| +.+..+.|+.-+++..+-..-+. ....++.++.+
T Consensus 109 p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~---~G~d~el~~~~ 185 (232)
T PRK13586 109 FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTT---KGIDYNVKDYA 185 (232)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccC---cCcCHHHHHHH
Confidence 1 122222321 22233322 24555 56677889988777655543332 33567888888
Q ss_pred HHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 451 CLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 451 ~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
++. ..|+++.||++ .+++.++.+.|++ |+.+|++++.
T Consensus 186 ~~~-~~~viasGGv~s~~Dl~~l~~~G~~---gvivg~Aly~ 223 (232)
T PRK13586 186 RLI-RGLKEYAGGVSSDADLEYLKNVGFD---YIIVGMAFYL 223 (232)
T ss_pred HhC-CCCEEEECCCCCHHHHHHHHHCCCC---EEEEehhhhc
Confidence 765 56799999997 6899999999999 9999999983
No 248
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.0019 Score=63.40 Aligned_cols=171 Identities=17% Similarity=0.158 Sum_probs=107.4
Q ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEe-CCCCCC---HHHHHhhcCC----CcEE
Q 010244 333 TIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHL-GQSDMP---ARTARALLGP----DKII 404 (514)
Q Consensus 333 ~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl-~~~~~~---~~~~~~~~~~----~~~i 404 (514)
+=+.+..-.-+++.+.+.++.+.+.|...++.+ --....|.+ |--|..| ...++- +..++...+. ...|
T Consensus 74 ~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNc--GCPq~~a~~-g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI 150 (358)
T KOG2335|consen 74 RPLIVQFGGNDPENLLKAARLVQPYCDGIDLNC--GCPQKVAKR-GGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRI 150 (358)
T ss_pred CceEEEEcCCCHHHHHHHHHHhhhhcCcccccC--CCCHHHHhc-CCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 334444555667788888887777774433211 111233333 3223333 112211 1223332222 2344
Q ss_pred EEecC-CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-CCEEEECCCC-cccHHHHHH-CCCCCC
Q 010244 405 GVSCK-TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-LPVVAIGGIG-ISNASDVMK-IGVSNL 480 (514)
Q Consensus 405 g~s~~-~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-~pv~a~GGi~-~~~~~~~~~-~Ga~~~ 480 (514)
+.+.| |++.++...+.|++.+.+..=-.-......+++.|+.++.+++.++ +||+|=|+|. .+++..+++ .|++
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~d-- 228 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGAD-- 228 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCc--
Confidence 55555 7888999999999999775322222222257789999999999996 9999999997 788999888 9999
Q ss_pred ceEEEeecccCC----------CCHHHHHHHHHHHHHHH
Q 010244 481 KGVAVVSALFDR----------ECILPESKKLHAVLMDA 509 (514)
Q Consensus 481 ~gva~~~~i~~~----------~~~~~~~~~~~~~~~~~ 509 (514)
||-+++++..+ ..+.+.++++.....+.
T Consensus 229 -GVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~ 266 (358)
T KOG2335|consen 229 -GVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREF 266 (358)
T ss_pred -eEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 99999988743 24556666666665543
No 249
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.49 E-value=0.00089 Score=66.78 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=97.3
Q ss_pred HHHHHHH-hCCCCEEEEEcCCCCHHHHHHHHHHHHHHH----hhcCc------eEEEcC----cHHHHHhCCCCeEEeCC
Q 010244 322 DAVKAAL-EGGATIIQLREKDADTRGFLEAAKACLQIC----CVHGV------PLLIND----RIDIALACDADGVHLGQ 386 (514)
Q Consensus 322 ~~~~~~~-~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~----~~~~~------~l~v~~----~~~~a~~~ga~gvhl~~ 386 (514)
+...+.. .+|+-+++ +..+.++..+.+++++... ..... .+-+.+ ..+...++|+|.+.+..
T Consensus 52 ~mAiama~~Gglgvih---~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~ 128 (352)
T PF00478_consen 52 EMAIAMARLGGLGVIH---RNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDS 128 (352)
T ss_dssp HHHHHHHHTTSEEEEE---SSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-
T ss_pred HHHHHHHHhcCCceec---CCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccc
Confidence 3444444 45555553 3456666666666665421 11112 222333 34556678999887754
Q ss_pred CCCC-------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCC-CCC-CCccCCHHHHH------HHH
Q 010244 387 SDMP-------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTN-TKA-NNLTVGLDGLK------TVC 451 (514)
Q Consensus 387 ~~~~-------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~-~k~-~~~~~g~~~l~------~~~ 451 (514)
.+.. ...+++.++.-.+++-.+-|.+-+....+.|+|.|-+|- -|.. |.. .....|...+. +.+
T Consensus 129 a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGi-GpGsiCtTr~v~GvG~PQ~tAv~~~a~~a 207 (352)
T PF00478_consen 129 AHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGI-GPGSICTTREVTGVGVPQLTAVYECAEAA 207 (352)
T ss_dssp SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESS-SSSTTBHHHHHHSBSCTHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEec-cCCcccccccccccCCcHHHHHHHHHHHh
Confidence 3322 345666666455667788899999999999999997752 1111 110 01122333333 333
Q ss_pred HcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 452 LASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 452 ~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
+...+||+|-|||. ..++..++.+||+ .|-+|+.|-..+
T Consensus 208 ~~~~v~iIADGGi~~sGDi~KAla~GAd---~VMlG~llAgt~ 247 (352)
T PF00478_consen 208 RDYGVPIIADGGIRTSGDIVKALAAGAD---AVMLGSLLAGTD 247 (352)
T ss_dssp HCTTSEEEEESS-SSHHHHHHHHHTT-S---EEEESTTTTTBT
T ss_pred hhccCceeecCCcCcccceeeeeeeccc---ceeechhhccCc
Confidence 44589999999997 7899999999999 999999987543
No 250
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.49 E-value=0.00078 Score=65.15 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=67.3
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCcccH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISNA 469 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~~ 469 (514)
..+|+..+....|-+-|.|++|+.+|.+.|+|.|.+-. ..++.++++.+.. ...+-|.||||++|+
T Consensus 184 ~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn------------~s~e~l~~av~~~~~~~~leaSGgI~~~ni 251 (281)
T PRK06543 184 RHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDN------------FSLDDLREGVELVDGRAIVEASGNVNLNTV 251 (281)
T ss_pred HHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECC------------CCHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 34555444456788889999999999999999997654 3466677776654 457999999999999
Q ss_pred HHHHHCCCCCCceEEEeecccC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
.++.++|+| .|.+|+-..+
T Consensus 252 ~~yA~tGVD---~Is~galths 270 (281)
T PRK06543 252 GAIASTGVD---VISVGALTHS 270 (281)
T ss_pred HHHHhcCCC---EEEeCccccC
Confidence 999999999 9988875443
No 251
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.49 E-value=0.0011 Score=66.69 Aligned_cols=112 Identities=18% Similarity=0.151 Sum_probs=81.2
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccH
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNA 469 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~ 469 (514)
+..++...+ ..++.-.+.+++++..|.+.|+|.|.+|.---++- +..+..++.+.++++.+++||++.|||. ..++
T Consensus 228 i~~ir~~~~-~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql--d~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv 304 (361)
T cd04736 228 LRWLRDLWP-HKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL--DDAIAPIEALAEIVAATYKPVLIDSGIRRGSDI 304 (361)
T ss_pred HHHHHHhCC-CCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC--cCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHH
Confidence 345555553 45666678999999999999999998875443331 1112247888888887789999999996 7899
Q ss_pred HHHHHCCCCCCceEEEeecccC------CCCHHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALFD------RECILPESKKLHAVLMD 508 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~------~~~~~~~~~~~~~~~~~ 508 (514)
...+.+||+ +|.+|+.+.. .+......+.|++.++.
T Consensus 305 ~KALaLGA~---aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~ 346 (361)
T cd04736 305 VKALALGAN---AVLLGRATLYGLAARGEAGVSEVLRLLKEEIDR 346 (361)
T ss_pred HHHHHcCCC---EEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999872 22334444445544443
No 252
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=97.48 E-value=0.00094 Score=63.59 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHC-CCCCCceEEEeecccC
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKI-GVSNLKGVAVVSALFD 491 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~-Ga~~~~gva~~~~i~~ 491 (514)
+....+.|+|++.+....... . ...+..++.++.+++..++||++.||| +++++.++++. |++ +|.++++++.
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~~~-~-~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad---~V~igr~~l~ 218 (231)
T cd02801 144 AKALEDAGASALTVHGRTREQ-R-YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVD---GVMIGRGALG 218 (231)
T ss_pred HHHHHHhCCCEEEECCCCHHH-c-CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCC---EEEEcHHhHh
Confidence 455667899999876532211 0 122347899999998889999999999 58999999997 899 9999999997
Q ss_pred CCCHH
Q 010244 492 RECIL 496 (514)
Q Consensus 492 ~~~~~ 496 (514)
.++..
T Consensus 219 ~P~~~ 223 (231)
T cd02801 219 NPWLF 223 (231)
T ss_pred CCHHH
Confidence 65433
No 253
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=97.48 E-value=0.0035 Score=64.29 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=56.0
Q ss_pred HHhhhCCCcEEEeccccCCC---CCC-CC--ccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCC-CCCCceEEEe
Q 010244 415 HQAWIDGANYIGCGGVYPTN---TKA-NN--LTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIG-VSNLKGVAVV 486 (514)
Q Consensus 415 ~~a~~~g~d~v~~~~vf~t~---~k~-~~--~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~G-a~~~~gva~~ 486 (514)
+...+.|+||+-++.-.... +.+ .. +..-++..+.+++.+++||++.||| +++++.++++.| ++ .|+++
T Consensus 259 ~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D---~V~~g 335 (382)
T cd02931 259 KILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIAD---MISLG 335 (382)
T ss_pred HHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCC---eeeec
Confidence 44456899999885322111 111 11 1112456677888889999999999 588899999976 88 99999
Q ss_pred ecccCCCCHHH
Q 010244 487 SALFDRECILP 497 (514)
Q Consensus 487 ~~i~~~~~~~~ 497 (514)
++++..++...
T Consensus 336 R~~ladP~l~~ 346 (382)
T cd02931 336 RPLLADPDVVN 346 (382)
T ss_pred hHhHhCccHHH
Confidence 99997766543
No 254
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.48 E-value=0.0035 Score=62.84 Aligned_cols=80 Identities=23% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCHHHHHHhhhCCCcEEEeccccCCCC---------C------CCCccCC---HHHHHHHHHcC-CCCEEEECCCC-ccc
Q 010244 409 KTPEEAHQAWIDGANYIGCGGVYPTNT---------K------ANNLTVG---LDGLKTVCLAS-KLPVVAIGGIG-ISN 468 (514)
Q Consensus 409 ~~~~e~~~a~~~g~d~v~~~~vf~t~~---------k------~~~~~~g---~~~l~~~~~~~-~~pv~a~GGi~-~~~ 468 (514)
.++++++.+.+.|+|+|.++....|.- . ......| .+.+.++++.. ++||++.|||. ..+
T Consensus 190 ~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d 269 (326)
T cd02811 190 ISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD 269 (326)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 456777777777888877754322210 0 0001112 35566666656 89999999996 789
Q ss_pred HHHHHHCCCCCCceEEEeecccC
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
+.+++.+||+ +|.+++.|+.
T Consensus 270 v~kal~lGAd---~V~i~~~~L~ 289 (326)
T cd02811 270 IAKALALGAD---LVGMAGPFLK 289 (326)
T ss_pred HHHHHHhCCC---EEEEcHHHHH
Confidence 9999999999 9999998763
No 255
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.44 E-value=0.00075 Score=65.35 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=65.2
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-------CCCEEEECCC
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-------KLPVVAIGGI 464 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-------~~pv~a~GGi 464 (514)
..+|+.. +...|-+-|.|++|+.+|.+.|+|.|.+-.+ .++.++++.+.+ ++.+.|.|||
T Consensus 174 ~~~r~~~-~~~kIeVEv~~leea~~a~~agaDiI~LDn~------------~~e~l~~~v~~l~~~~~~~~~~leaSGGI 240 (278)
T PRK08385 174 RRAKEFS-VYKVVEVEVESLEDALKAAKAGADIIMLDNM------------TPEEIREVIEALKREGLRERVKIEVSGGI 240 (278)
T ss_pred HHHHHhC-CCCcEEEEeCCHHHHHHHHHcCcCEEEECCC------------CHHHHHHHHHHHHhcCcCCCEEEEEECCC
Confidence 3445433 4456888999999999999999999977552 345555554422 4679999999
Q ss_pred CcccHHHHHHCCCCCCceEEEeecccCC
Q 010244 465 GISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 465 ~~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+++|+.++.++|+| .|.+|+-..++
T Consensus 241 ~~~ni~~yA~tGvD---~Is~galt~sa 265 (278)
T PRK08385 241 TPENIEEYAKLDVD---VISLGALTHSV 265 (278)
T ss_pred CHHHHHHHHHcCCC---EEEeChhhcCC
Confidence 99999999999999 99998765533
No 256
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=97.42 E-value=0.0017 Score=65.18 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=66.5
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc---C--CCCEEEECCCC-
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA---S--KLPVVAIGGIG- 465 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~---~--~~pv~a~GGi~- 465 (514)
..++...+...+ --.+.++++++.+.+.|+|+|.++.-.-+.-. .....++.+.++.+. . ++||++.|||.
T Consensus 206 ~~l~~~~~~Pvi-vKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~d--~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~ 282 (344)
T cd02922 206 KWLRKHTKLPIV-LKGVQTVEDAVLAAEYGVDGIVLSNHGGRQLD--TAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRR 282 (344)
T ss_pred HHHHHhcCCcEE-EEcCCCHHHHHHHHHcCCCEEEEECCCcccCC--CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 344444433333 34677899999999999999999753333211 111234555555542 2 59999999996
Q ss_pred cccHHHHHHCCCCCCceEEEeecccC
Q 010244 466 ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 466 ~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
..++.+++.+||+ +|.+++.++.
T Consensus 283 G~Dv~kalaLGA~---aV~iG~~~l~ 305 (344)
T cd02922 283 GTDVLKALCLGAK---AVGLGRPFLY 305 (344)
T ss_pred HHHHHHHHHcCCC---EEEECHHHHH
Confidence 7899999999999 9999999984
No 257
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.40 E-value=0.0029 Score=63.34 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=59.1
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHH-HCCCCCCceEEEeecccC
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVM-KIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~-~~Ga~~~~gva~~~~i~~ 491 (514)
+..+.+.|+|++.++........ ..+..++.++++++.+++||++.|||+ ++++.+++ ..|++ +|.++++++.
T Consensus 153 a~~l~~~G~d~i~vh~r~~~~~~--~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad---~VmigR~~l~ 227 (319)
T TIGR00737 153 ARIAEDAGAQAVTLHGRTRAQGY--SGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCD---GVMIGRGALG 227 (319)
T ss_pred HHHHHHhCCCEEEEEcccccccC--CCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCC---EEEEChhhhh
Confidence 55677889999988653221111 123468899999998899999999996 88999999 58899 9999999986
Q ss_pred CCCH
Q 010244 492 RECI 495 (514)
Q Consensus 492 ~~~~ 495 (514)
.+..
T Consensus 228 ~P~l 231 (319)
T TIGR00737 228 NPWL 231 (319)
T ss_pred CChH
Confidence 5543
No 258
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.40 E-value=0.0045 Score=62.52 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=70.6
Q ss_pred HHHhhcCCCcEEEEecC---------CHHHH----HHhhhCCCcEEEeccccCCCCC----CC-----CccCCHHHHHHH
Q 010244 393 TARALLGPDKIIGVSCK---------TPEEA----HQAWIDGANYIGCGGVYPTNTK----AN-----NLTVGLDGLKTV 450 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~---------~~~e~----~~a~~~g~d~v~~~~vf~t~~k----~~-----~~~~g~~~l~~~ 450 (514)
.+|+..+.+..+++-.+ +.+|. ....+.|+||+-++.-...+.. +. .+..-++..+++
T Consensus 208 aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 287 (338)
T cd04733 208 AIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKI 287 (338)
T ss_pred HHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHH
Confidence 45555666777776553 65653 4556789999987543211111 00 011125777788
Q ss_pred HHcCCCCEEEECCC-CcccHHHHHHCC-CCCCceEEEeecccCCCCHHHH
Q 010244 451 CLASKLPVVAIGGI-GISNASDVMKIG-VSNLKGVAVVSALFDRECILPE 498 (514)
Q Consensus 451 ~~~~~~pv~a~GGi-~~~~~~~~~~~G-a~~~~gva~~~~i~~~~~~~~~ 498 (514)
++.+++||++.|+| +++++.++++.| ++ .|++++.++..++....
T Consensus 288 k~~v~iPVi~~G~i~t~~~a~~~l~~g~aD---~V~lgR~~iadP~~~~k 334 (338)
T cd04733 288 RKVTKTPLMVTGGFRTRAAMEQALASGAVD---GIGLARPLALEPDLPNK 334 (338)
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHHcCCCC---eeeeChHhhhCccHHHH
Confidence 88889999999999 488999999987 78 99999999977765443
No 259
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=97.37 E-value=0.0024 Score=60.81 Aligned_cols=84 Identities=29% Similarity=0.286 Sum_probs=66.7
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc--C--CCCEEEECCCCc
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA--S--KLPVVAIGGIGI 466 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~--~--~~pv~a~GGi~~ 466 (514)
+..+|+..+....|-+-+.|++|+.+|.++|+|.|.+-. ..++.+++..+. . .+-+=+.|||++
T Consensus 178 v~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDN------------m~~e~~~~av~~l~~~~~~~lEaSGgIt~ 245 (280)
T COG0157 178 VRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDN------------MSPEELKEAVKLLGLAGRALLEASGGITL 245 (280)
T ss_pred HHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecC------------CCHHHHHHHHHHhccCCceEEEEeCCCCH
Confidence 445666666566688899999999999999999997754 446667777665 3 455788999999
Q ss_pred ccHHHHHHCCCCCCceEEEeecc
Q 010244 467 SNASDVMKIGVSNLKGVAVVSAL 489 (514)
Q Consensus 467 ~~~~~~~~~Ga~~~~gva~~~~i 489 (514)
+|+.++.+.|++ .|.+|.--
T Consensus 246 ~ni~~yA~tGVD---~IS~galt 265 (280)
T COG0157 246 ENIREYAETGVD---VISVGALT 265 (280)
T ss_pred HHHHHHhhcCCC---EEEeCccc
Confidence 999999999999 88877533
No 260
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.36 E-value=0.0041 Score=57.49 Aligned_cols=151 Identities=18% Similarity=0.211 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc--------------CcHHHHHhCCCCeEE
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN--------------DRIDIALACDADGVH 383 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~--------------~~~~~a~~~ga~gvh 383 (514)
+...+.++.++++|++.+.+.- +.++.+.+.+...++++++. ...+.|.++|+|++-
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 5678888999999999998864 33344444433224666541 124567789999986
Q ss_pred eCCCC--C-C------HH---HHHhhcCCCcEEEEec-----CCHHHHHH----hhhCCCcEEEeccccCCCCCCCCccC
Q 010244 384 LGQSD--M-P------AR---TARALLGPDKIIGVSC-----KTPEEAHQ----AWIDGANYIGCGGVYPTNTKANNLTV 442 (514)
Q Consensus 384 l~~~~--~-~------~~---~~~~~~~~~~~ig~s~-----~~~~e~~~----a~~~g~d~v~~~~vf~t~~k~~~~~~ 442 (514)
+.... . . .. .++...+.+..+..-. .+++++.+ +.+.|+|++-. +....+ ...
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~---~~~~~~---~~~ 157 (201)
T cd00945 84 VVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT---STGFGG---GGA 157 (201)
T ss_pred EeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe---CCCCCC---CCC
Confidence 53211 1 1 11 1222211133332222 15565443 45789999943 332111 224
Q ss_pred CHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEe
Q 010244 443 GLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 443 g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~ 486 (514)
+++.++++++.. ++|+++.||++ ++++.+++..|++ |+.++
T Consensus 158 ~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~---g~~~g 201 (201)
T cd00945 158 TVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGAD---GIGTS 201 (201)
T ss_pred CHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccc---eeecC
Confidence 678888888876 67999999998 8889999999999 88653
No 261
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.35 E-value=0.0019 Score=68.19 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHHHhhcCCCcEEE-EecCCHHHHHHhhhCCCcEEEec----cccCCCCCCCCccCCHHHHHHHHHcC---------CC
Q 010244 391 ARTARALLGPDKIIG-VSCKTPEEAHQAWIDGANYIGCG----GVYPTNTKANNLTVGLDGLKTVCLAS---------KL 456 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig-~s~~~~~e~~~a~~~g~d~v~~~----~vf~t~~k~~~~~~g~~~l~~~~~~~---------~~ 456 (514)
+..++..++.+..++ -.+-|++.++.+.+.|||+|-+| .+--|....+.....+..+.++++.. .+
T Consensus 274 i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~ 353 (502)
T PRK07107 274 LDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYI 353 (502)
T ss_pred HHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcc
Confidence 345555554334444 45679999999999999998773 22222211222212334444444321 38
Q ss_pred CEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 457 PVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 457 pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
||++.|||. ..++..++.+||+ +|.+|+.|-..
T Consensus 354 ~viadgGir~~gdi~KAla~GA~---~vm~G~~~ag~ 387 (502)
T PRK07107 354 PICSDGGIVYDYHMTLALAMGAD---FIMLGRYFARF 387 (502)
T ss_pred eEEEcCCCCchhHHHHHHHcCCC---eeeeChhhhcc
Confidence 999999997 7899999999999 99999998753
No 262
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.35 E-value=0.016 Score=54.03 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=90.5
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhhc--CceEEEcCcHH----HHHhCCCCeEEeCCCCCCHHHH
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCVH--GVPLLINDRID----IALACDADGVHLGQSDMPARTA 394 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~~--~~~l~v~~~~~----~a~~~ga~gvhl~~~~~~~~~~ 394 (514)
+-++.+.+.|++++=+=....+++.. .+.++++....... .+-++++.+++ ++..++.|.|+|.... +...+
T Consensus 12 eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e-~~~~~ 90 (207)
T PRK13958 12 KDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTE-SIDFI 90 (207)
T ss_pred HHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCC-CHHHH
Confidence 34667888899877664322233322 23344444433221 24566777654 4456789999986543 34444
Q ss_pred HhhcC--CCcEEEEecC-CHHHHH--HhhhCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHcCCCCEEEECCCCccc
Q 010244 395 RALLG--PDKIIGVSCK-TPEEAH--QAWIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLASKLPVVAIGGIGISN 468 (514)
Q Consensus 395 ~~~~~--~~~~ig~s~~-~~~e~~--~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~ 468 (514)
+.... +...+....+ +..... ..++..+|++++-. .+.. ..+ .....|+.++.+ ...|++..||++++|
T Consensus 91 ~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs-~~~~-~GGtG~~~dw~~~~~~---~~~p~iLAGGL~peN 165 (207)
T PRK13958 91 QEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDT-PSVS-YGGTGQTYDWTILKHI---KDIPYLIAGGINSEN 165 (207)
T ss_pred HHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcC-CCCC-CCcCCcEeChHHhhhc---cCCCEEEECCCCHHH
Confidence 43321 1122221111 222222 11233489887743 1111 111 123567777654 356999999999999
Q ss_pred HHHHHH--CCCCCCceEEEeecccC
Q 010244 469 ASDVMK--IGVSNLKGVAVVSALFD 491 (514)
Q Consensus 469 ~~~~~~--~Ga~~~~gva~~~~i~~ 491 (514)
+.++++ .+.. ||=+.|.+=.
T Consensus 166 V~~a~~~~~~p~---gVDvsSGVE~ 187 (207)
T PRK13958 166 IQTVEQLKLSHQ---GYDIASGIET 187 (207)
T ss_pred HHHHHhcCCCCC---EEEcccccCC
Confidence 999874 5888 9999998874
No 263
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.35 E-value=0.0014 Score=63.54 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=65.9
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCcccHH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISNAS 470 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~~~ 470 (514)
.+++... ...|-+-|.|.+|+.+|.+.|+|.|.+-. ..++.++++.+.. ++.+-|.||||++|+.
T Consensus 198 ~~r~~~~-~~kIeVEvetleea~eA~~aGaDiImLDn------------mspe~l~~av~~~~~~~~lEaSGGIt~~ni~ 264 (294)
T PRK06978 198 AAFALNA-GVPVQIEVETLAQLETALAHGAQSVLLDN------------FTLDMMREAVRVTAGRAVLEVSGGVNFDTVR 264 (294)
T ss_pred HHHHhCC-CCcEEEEcCCHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHhhcCCeEEEEECCCCHHHHH
Confidence 3444332 35588889999999999999999997754 3466666666554 5779999999999999
Q ss_pred HHHHCCCCCCceEEEeecccCC
Q 010244 471 DVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
++.+.|++ .|.+|+-..++
T Consensus 265 ~yA~tGVD---~IS~galthsa 283 (294)
T PRK06978 265 AFAETGVD---RISIGALTKDV 283 (294)
T ss_pred HHHhcCCC---EEEeCccccCC
Confidence 99999999 99888755543
No 264
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0099 Score=54.69 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=82.0
Q ss_pred cCCCcEEEEecC-CHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHC
Q 010244 398 LGPDKIIGVSCK-TPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKI 475 (514)
Q Consensus 398 ~~~~~~ig~s~~-~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~ 475 (514)
.+.+..+-.=|+ ++--+++..+.|+-.| .|.-... ..+........|+-+.+..++||+..-||. +.++..+++.
T Consensus 127 v~eGF~VlPY~~dD~v~arrLee~Gcaav--MPl~aPI-GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMEl 203 (262)
T COG2022 127 VKEGFVVLPYTTDDPVLARRLEEAGCAAV--MPLGAPI-GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMEL 203 (262)
T ss_pred HhCCCEEeeccCCCHHHHHHHHhcCceEe--ccccccc-cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhc
Confidence 344555555555 6888888889988766 3433211 111223345788889999999999999996 8999999999
Q ss_pred CCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 476 GVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 476 Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
|++ +|-+-++|..+.||...+++|+.++..-
T Consensus 204 G~D---aVL~NTAiA~A~DPv~MA~Af~~Av~AG 234 (262)
T COG2022 204 GAD---AVLLNTAIARAKDPVAMARAFALAVEAG 234 (262)
T ss_pred ccc---eeehhhHhhccCChHHHHHHHHHHHHHh
Confidence 999 9999999999999999999999998764
No 265
>PLN02363 phosphoribosylanthranilate isomerase
Probab=97.32 E-value=0.016 Score=55.79 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=90.4
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhhcC---ceEEEcCcHH----HHHhCCCCeEEeCCCCCCHHH
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCVHG---VPLLINDRID----IALACDADGVHLGQSDMPART 393 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~~~---~~l~v~~~~~----~a~~~ga~gvhl~~~~~~~~~ 393 (514)
+-++.+.+.|++++=+=....+++.. .+.+++|......++ +-++++.+++ ++.+++.|.|+|.... ....
T Consensus 58 eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~e-~~~~ 136 (256)
T PLN02363 58 RDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGNG-SRAA 136 (256)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC-CHHH
Confidence 34667888999887664322233222 233444444333322 4566787765 4567789999996543 3333
Q ss_pred HHhhcC-CCcEEEEecCCHHH-HHHhh---hCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHcCCCCEEEECCCCcc
Q 010244 394 ARALLG-PDKIIGVSCKTPEE-AHQAW---IDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLASKLPVVAIGGIGIS 467 (514)
Q Consensus 394 ~~~~~~-~~~~ig~s~~~~~e-~~~a~---~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~~~~pv~a~GGi~~~ 467 (514)
+..... ...+--....+..+ +.... ...+|++++-. .. .+ .....|+.++...-....|++..|||+++
T Consensus 137 ~~~l~~~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs----~~-GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~pe 211 (256)
T PLN02363 137 FSRLVRERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDS----AT-GGSGKGFNWQNFKLPSVRSRNGWLLAGGLTPE 211 (256)
T ss_pred HHHhhcCCcEEEEEEECchHHHHHHHHhhccccCCEEEEeC----CC-CCCCCccCHHHhcccccccCCCEEEECCCCHH
Confidence 333321 12222233333333 22221 23478886642 11 11 22345665531110125689999999999
Q ss_pred cHHHHHH-CCCCCCceEEEeecccCC
Q 010244 468 NASDVMK-IGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 468 ~~~~~~~-~Ga~~~~gva~~~~i~~~ 492 (514)
|+.++++ .+.. ||=+.|.+=..
T Consensus 212 NV~~ai~~~~P~---GVDVsSGVE~~ 234 (256)
T PLN02363 212 NVHEAVSLLKPT---GVDVSSGICGP 234 (256)
T ss_pred HHHHHHHhcCCc---EEEeCCcccCC
Confidence 9999876 7899 99999999754
No 266
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=97.32 E-value=0.0021 Score=62.76 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=66.7
Q ss_pred CCCcEEEEecCCHHHHHHhhh------CCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCcccHH
Q 010244 399 GPDKIIGVSCKTPEEAHQAWI------DGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISNAS 470 (514)
Q Consensus 399 ~~~~~ig~s~~~~~e~~~a~~------~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~~~ 470 (514)
.+...|-+-|.|++|+.+|.+ .|+|.|.+-.+.-++ ..-...++.+++..+.. ..|+-|.||||++|+.
T Consensus 201 ~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~---~~~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~ 277 (308)
T PLN02716 201 GLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPL---ENGDVDVSMLKEAVELINGRFETEASGNVTLDTVH 277 (308)
T ss_pred CCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccc---cccCCCHHHHHHHHHhhCCCceEEEECCCCHHHHH
Confidence 345678889999999999999 999999887752111 11112567777777654 5789999999999999
Q ss_pred HHHHCCCCCCceEEEeeccc
Q 010244 471 DVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~ 490 (514)
++.+.|++ .|.+|+-..
T Consensus 278 ~yA~tGVD---~Is~Galth 294 (308)
T PLN02716 278 KIGQTGVT---YISSGALTH 294 (308)
T ss_pred HHHHcCCC---EEEeCcccc
Confidence 99999999 998886544
No 267
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.32 E-value=0.0015 Score=63.45 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=63.3
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc-----CCCCEEEECCCCcc
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA-----SKLPVVAIGGIGIS 467 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~-----~~~pv~a~GGi~~~ 467 (514)
.+|+.. +...+-+-|.|++|+.+|.+.|+|.|.+-. ..++.++++.+. .++.+-|.||||++
T Consensus 182 ~~r~~~-~~~kIeVEv~tleqa~ea~~agaDiI~LDn------------~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ 248 (284)
T PRK06096 182 QLRRHA-PEKKIVVEADTPKEAIAALRAQPDVLQLDK------------FSPQQATEIAQIAPSLAPHCTLSLAGGINLN 248 (284)
T ss_pred HHHHhC-CCCCEEEECCCHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCCCeEEEEECCCCHH
Confidence 444433 345588889999999999999999998844 345556665543 25679999999999
Q ss_pred cHHHHHHCCCCCCceEEEeecccCC
Q 010244 468 NASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
|+.++.+.|++ .+.++ +++.+
T Consensus 249 ni~~yA~tGvD---~Is~g-al~~a 269 (284)
T PRK06096 249 TLKNYADCGIR---LFITS-APYYA 269 (284)
T ss_pred HHHHHHhcCCC---EEEEC-ccccC
Confidence 99999999999 88555 45543
No 268
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=97.31 E-value=0.0036 Score=58.63 Aligned_cols=192 Identities=15% Similarity=0.044 Sum_probs=108.0
Q ss_pred ceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHH-HHHHHHHHhhc-CceEEE----cC----cH
Q 010244 302 LFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREKDADTRGFLEA-AKACLQICCVH-GVPLLI----ND----RI 371 (514)
Q Consensus 302 ~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~v----~~----~~ 371 (514)
+++++-.|-.. .++..+.++++ ...++++.+=. .-+.+. .+.+.++.+.+ |.++++ +| -.
T Consensus 4 ~~livALD~~~----~~~A~~l~~~l-~~~v~~iKVG~-----~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~ 73 (218)
T PRK13305 4 PLLQLALDHTS----LEAAQRDVTLL-KDHVDIVEAGT-----ILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLA 73 (218)
T ss_pred CCEEEEeCCCC----HHHHHHHHHHc-cccCCEEEECH-----HHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHH
Confidence 34555556432 13556655554 55678877622 223332 22233333333 445553 23 12
Q ss_pred HHHHhCCCC--eEEeCCCCCCHHHHHh---hcC---CCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCC
Q 010244 372 DIALACDAD--GVHLGQSDMPARTARA---LLG---PDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 372 ~~a~~~ga~--gvhl~~~~~~~~~~~~---~~~---~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g 443 (514)
..+.+.|+| .+|-.........+.+ ..+ ...++|+. |.++.....+.|.+++.+.--..... .+. ...
T Consensus 74 ~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~--t~~~~~~l~~~g~~~~v~h~a~~a~~-~G~-v~s 149 (218)
T PRK13305 74 QQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNW--TLDDARDWHRIGVRQAIYHRGRDAQA-SGQ-QWG 149 (218)
T ss_pred HHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEec--CcchHHHHHHcCCHHHHHHHHHHHHH-hCC-CCC
Confidence 355688998 4554333222222222 111 12477763 43444444567777554421111100 000 112
Q ss_pred HHHHHHHHHcC--CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHHh
Q 010244 444 LDGLKTVCLAS--KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 444 ~~~l~~~~~~~--~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~~ 510 (514)
...+..+++.+ +.++...|||+++.....-+.+++ .+.+||+|++++||.++++++++.+.++|
T Consensus 150 ~~e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~rvd---~iVVGR~It~A~dP~~aa~~i~~~i~~~~ 215 (218)
T PRK13305 150 EADLARMKALSDIGLELSITGGITPADLPLFKDIRVK---AFIAGRALAGAANPAQVAADFHAQIDAIW 215 (218)
T ss_pred HHHHHHHHHHhCCCCcEEEeCCcCccccccccccCCC---EEEECCcccCCCCHHHHHHHHHHHHHHhh
Confidence 23344444443 567899999999999988999888 99999999999999999999999998765
No 269
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.30 E-value=0.0015 Score=63.48 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=65.3
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc-----CCCCEEEECCCCcc
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA-----SKLPVVAIGGIGIS 467 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~-----~~~pv~a~GGi~~~ 467 (514)
.+++.. +...+-+-|.|.+|+.+|.+.|+|+|.+-. ..++.++++.+. -++.+.|.||||++
T Consensus 192 ~~r~~~-~~~kIeVEv~tl~ea~eal~~gaDiI~LDn------------m~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ 258 (289)
T PRK07896 192 AVRAAA-PDLPCEVEVDSLEQLDEVLAEGAELVLLDN------------FPVWQTQEAVQRRDARAPTVLLESSGGLTLD 258 (289)
T ss_pred HHHHhC-CCCCEEEEcCCHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHhccCCCEEEEEECCCCHH
Confidence 344332 345578889999999999999999997753 346666666643 25779999999999
Q ss_pred cHHHHHHCCCCCCceEEEeecccCC
Q 010244 468 NASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
|+.++.++|++ .|.+|+-..++
T Consensus 259 ni~~yA~tGvD---~Is~galt~sa 280 (289)
T PRK07896 259 TAAAYAETGVD---YLAVGALTHSV 280 (289)
T ss_pred HHHHHHhcCCC---EEEeChhhcCC
Confidence 99999999999 99998765533
No 270
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.30 E-value=0.012 Score=59.70 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=68.1
Q ss_pred HHHHhhcCCCcEEEE-----ec----CCHHHH----HHhhhCCCcEEEeccccC-CCCC--CCCccC--CHHHHHHHHHc
Q 010244 392 RTARALLGPDKIIGV-----SC----KTPEEA----HQAWIDGANYIGCGGVYP-TNTK--ANNLTV--GLDGLKTVCLA 453 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~-----s~----~~~~e~----~~a~~~g~d~v~~~~vf~-t~~k--~~~~~~--g~~~l~~~~~~ 453 (514)
..+|+..+.+..+++ .. .+++|+ ....+.|+||+-++.-+. ..+. +...+. -.+..+++++.
T Consensus 195 ~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~ 274 (353)
T cd02930 195 RAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA 274 (353)
T ss_pred HHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh
Confidence 345566666666662 11 255553 445578999998864332 1111 111111 23556788888
Q ss_pred CCCCEEEECCC-CcccHHHHHHCC-CCCCceEEEeecccCCCCHH
Q 010244 454 SKLPVVAIGGI-GISNASDVMKIG-VSNLKGVAVVSALFDRECIL 496 (514)
Q Consensus 454 ~~~pv~a~GGi-~~~~~~~~~~~G-a~~~~gva~~~~i~~~~~~~ 496 (514)
+++||++.|++ +++.+.++++.| ++ +|++++.++..++..
T Consensus 275 v~iPVi~~G~i~~~~~a~~~i~~g~~D---~V~~gR~~l~dP~~~ 316 (353)
T cd02930 275 VDIPVIASNRINTPEVAERLLADGDAD---MVSMARPFLADPDFV 316 (353)
T ss_pred CCCCEEEcCCCCCHHHHHHHHHCCCCC---hhHhhHHHHHCccHH
Confidence 89999999999 588899999976 88 999999999776643
No 271
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.27 E-value=0.0019 Score=62.88 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred CcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCCcccHHHHHHCCCC
Q 010244 401 DKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIGISNASDVMKIGVS 478 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~~~~~~~~~~~Ga~ 478 (514)
...+-+-|.|.+|+.+|.+.|+|+|.+-. ..++.++++.+.. ++.+-|.|||+++|+.++.+.|++
T Consensus 208 ~~kIeVEv~sleea~ea~~~gaDiI~LDn------------~s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD 275 (296)
T PRK09016 208 DVPVEVEVENLDELDQALKAGADIIMLDN------------FTTEQMREAVKRTNGRALLEVSGNVTLETLREFAETGVD 275 (296)
T ss_pred CCCEEEEeCCHHHHHHHHHcCCCEEEeCC------------CChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCC
Confidence 44578889999999999999999997644 2346666666543 678999999999999999999999
Q ss_pred CCceEEEeeccc
Q 010244 479 NLKGVAVVSALF 490 (514)
Q Consensus 479 ~~~gva~~~~i~ 490 (514)
.|.+|+-..
T Consensus 276 ---~Is~galth 284 (296)
T PRK09016 276 ---FISVGALTK 284 (296)
T ss_pred ---EEEeCcccc
Confidence 998886443
No 272
>PLN02535 glycolate oxidase
Probab=97.26 E-value=0.0022 Score=64.58 Aligned_cols=93 Identities=19% Similarity=0.157 Sum_probs=67.7
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNA 469 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~ 469 (514)
.++...+ ..++--.+.+++++..+.+.|+|+|.++.-.-.. .+..+..++.+.++++.. ++||++.|||. ..++
T Consensus 217 ~lr~~~~-~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~--~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 217 WLRSITN-LPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ--LDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred HHHhccC-CCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC--CCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHH
Confidence 4444443 3344455789999999999999999886433211 111222356777776654 69999999996 7899
Q ss_pred HHHHHCCCCCCceEEEeecccC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
.+.+.+||+ +|.+|+.++.
T Consensus 294 ~KALalGA~---aV~vGr~~l~ 312 (364)
T PLN02535 294 FKALALGAQ---AVLVGRPVIY 312 (364)
T ss_pred HHHHHcCCC---EEEECHHHHh
Confidence 999999999 9999999873
No 273
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.012 Score=54.14 Aligned_cols=169 Identities=21% Similarity=0.177 Sum_probs=110.4
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC-H
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP-A 391 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~-~ 391 (514)
+..+....--+.|++-+.+-+=+.+.+...-....+...+...-+|+.+-+ +.+..+.+|||-|.+.+.... +
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p 110 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDP 110 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcCh
Confidence 345566666778888777766555544433344445555556567777743 566777888998888765421 1
Q ss_pred H---HHHhhcCC----------------CcEEEEecC--------C-HHHHHHhhhCCCcEEEeccccCCCCCCCCccCC
Q 010244 392 R---TARALLGP----------------DKIIGVSCK--------T-PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 392 ~---~~~~~~~~----------------~~~ig~s~~--------~-~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g 443 (514)
. ++...++. ..+.-+.+| + .+=+++..++||--|++..+-...+|.+ ..
T Consensus 111 ~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G---yD 187 (256)
T COG0107 111 ELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAG---YD 187 (256)
T ss_pred HHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccC---cC
Confidence 1 22222211 111222233 1 3337788899999998877766666655 46
Q ss_pred HHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEeecccCCC
Q 010244 444 LDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVSALFDRE 493 (514)
Q Consensus 444 ~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~~i~~~~ 493 (514)
++.++.+++.+++||+|.||.. ++++.+++..| ++ ++...|-|...+
T Consensus 188 l~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ad---AaLAAsiFH~~~ 236 (256)
T COG0107 188 LELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKAD---AALAASIFHFGE 236 (256)
T ss_pred HHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCcc---HHHhhhhhhcCc
Confidence 8999999999999999999996 89999988777 77 777666555433
No 274
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.22 E-value=0.0046 Score=57.68 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=92.7
Q ss_pred HHHHH-hCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-CcHHHHHhCCCCeEEeCC----CCCCH-----H
Q 010244 324 VKAAL-EGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-DRIDIALACDADGVHLGQ----SDMPA-----R 392 (514)
Q Consensus 324 ~~~~~-~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-~~~~~a~~~ga~gvhl~~----~~~~~-----~ 392 (514)
+++.+ +.|.+.+.+=-...-.+...+..+.+++.++ .+++++- .+.. ...-+||++-+++ .+... .
T Consensus 17 ~~~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~--~~Pvilfp~~~~-~i~~~aDa~l~~svlns~n~~~i~g~~~ 93 (219)
T cd02812 17 IAKLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRR--PVPVILFPSNPE-AVSPGADAYLFPSVLNSGDPYWIIGAQA 93 (219)
T ss_pred HHHHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcC--CCCEEEeCCCcc-ccCcCCCEEEEEeeecCCCchHHHHHHH
Confidence 44444 4999999885443111233344444544332 4677652 2332 2345688876655 23211 0
Q ss_pred HHHhhc-----------------CCCcEEE----Eec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHH
Q 010244 393 TARALL-----------------GPDKIIG----VSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTV 450 (514)
Q Consensus 393 ~~~~~~-----------------~~~~~ig----~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~ 450 (514)
+.-..+ .++..++ +-+ .+++++. ++.+-+++++ -|++... ..+.. ...+.++.+
T Consensus 94 ~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~-ayA~aae~~g-~~ivyLe-~SG~~-~~~e~I~~v 169 (219)
T cd02812 94 EAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAA-AYALAAEYLG-MPIVYLE-YSGAY-GPPEVVRAV 169 (219)
T ss_pred HHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHH-HHHHHHHHcC-CeEEEeC-CCCCc-CCHHHHHHH
Confidence 111111 1111111 122 2455533 3333355555 4555544 32333 578999999
Q ss_pred HHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 451 CLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 451 ~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
++.. ++|++.-|||. ++.+.+++++||+ +|.+|+++.+.
T Consensus 170 ~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD---~VVVGsai~~~ 210 (219)
T cd02812 170 KKVLGDTPLIVGGGIRSGEQAKEMAEAGAD---TIVVGNIVEED 210 (219)
T ss_pred HHhcCCCCEEEeCCCCCHHHHHHHHHcCCC---EEEECchhhCC
Confidence 9988 99999999995 8999999999999 99999999964
No 275
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.20 E-value=0.0087 Score=60.66 Aligned_cols=82 Identities=18% Similarity=0.198 Sum_probs=56.8
Q ss_pred CHHHHHH----hhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-------------------Cc
Q 010244 410 TPEEAHQ----AWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-------------------GI 466 (514)
Q Consensus 410 ~~~e~~~----a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-------------------~~ 466 (514)
+++|... ..+.|+||+-++.-. ...+......++..+++++..++||++.||| ++
T Consensus 233 ~~~e~~~~~~~l~~~gvd~i~vs~g~--~~~~~~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~ 310 (361)
T cd04747 233 TPDELEALLAPLVDAGVDIFHCSTRR--FWEPEFEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASL 310 (361)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCC--ccCCCcCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCH
Confidence 4555433 367899999664320 0012222234566677777789999999998 67
Q ss_pred ccHHHHHHCC-CCCCceEEEeecccCCCCHH
Q 010244 467 SNASDVMKIG-VSNLKGVAVVSALFDRECIL 496 (514)
Q Consensus 467 ~~~~~~~~~G-a~~~~gva~~~~i~~~~~~~ 496 (514)
+.+.++++.| ++ .|++++.++..++..
T Consensus 311 ~~a~~~l~~g~~D---~V~~gR~~iadP~~~ 338 (361)
T cd04747 311 DRLLERLERGEFD---LVAVGRALLSDPAWV 338 (361)
T ss_pred HHHHHHHHCCCCC---eehhhHHHHhCcHHH
Confidence 8899999876 88 999999999766543
No 276
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.20 E-value=0.0017 Score=65.64 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=60.6
Q ss_pred HHHhhhCCCcEEEeccccCCCC----------CCCCc-----cCCHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHC
Q 010244 414 AHQAWIDGANYIGCGGVYPTNT----------KANNL-----TVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKI 475 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~----------k~~~~-----~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~ 475 (514)
++.+.+.|+|.|.++.-+.... ..+.+ +..++.++++++.. ++||++.|||. .+++.+++.+
T Consensus 231 a~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~a 310 (344)
T PRK05286 231 ADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRA 310 (344)
T ss_pred HHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 4556788999998854321110 00111 12456777887777 79999999996 8999999999
Q ss_pred CCCCCceEEEeecccCC-CCHHHHHHHHHHHHHHH
Q 010244 476 GVSNLKGVAVVSALFDR-ECILPESKKLHAVLMDA 509 (514)
Q Consensus 476 Ga~~~~gva~~~~i~~~-~~~~~~~~~~~~~~~~~ 509 (514)
||+ +|.++++++.. .+ .++++++.+.+.
T Consensus 311 GAd---~V~v~~~~~~~gP~---~~~~i~~~L~~~ 339 (344)
T PRK05286 311 GAS---LVQIYSGLIYEGPG---LVKEIVRGLARL 339 (344)
T ss_pred CCC---HHHHHHHHHHhCch---HHHHHHHHHHHH
Confidence 999 99999999742 33 333444444443
No 277
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.20 E-value=0.0046 Score=61.87 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=84.0
Q ss_pred HHHHHhCCCCEEEEEcC---CCC---HHHHHHHHHHHHHHHhhcCceEEEc--CcHHHHHhCCCCeEEeCCCCCCHHHHH
Q 010244 324 VKAALEGGATIIQLREK---DAD---TRGFLEAAKACLQICCVHGVPLLIN--DRIDIALACDADGVHLGQSDMPARTAR 395 (514)
Q Consensus 324 ~~~~~~~Gv~~v~lr~~---~~~---~~~~~~~~~~~~~~~~~~~~~l~v~--~~~~~a~~~ga~gvhl~~~~~~~~~~~ 395 (514)
++.+++.|++.|-+-.. +.+ ..+..+.+.++.+.|+++|.++++. .+.. +...... .+..
T Consensus 112 ve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~--------~~~~~~~----~~~a 179 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG--------KGSDKKA----EEFA 179 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC--------Ccccccc----cccc
Confidence 56788888776655333 212 2345566888899999999999883 2211 1111000 0000
Q ss_pred hhcCCCcEEEEecCCHHHHHHhh--hCCCcEEEeccccCCCCCCCCccCC-----------HHHHHHHHHcCCCCEEE-E
Q 010244 396 ALLGPDKIIGVSCKTPEEAHQAW--IDGANYIGCGGVYPTNTKANNLTVG-----------LDGLKTVCLASKLPVVA-I 461 (514)
Q Consensus 396 ~~~~~~~~ig~s~~~~~e~~~a~--~~g~d~v~~~~vf~t~~k~~~~~~g-----------~~~l~~~~~~~~~pv~a-~ 461 (514)
+ ..+..+ .+-++.+. ++|+|.+ ++..+..-......+ .+.++++.+.+++|++. -
T Consensus 180 ~-~~p~~V-------~~a~r~~~~~elGaDvl---Kve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvls 248 (340)
T PRK12858 180 K-VKPEKV-------IKTMEEFSKPRYGVDVL---KVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLS 248 (340)
T ss_pred c-cCHHHH-------HHHHHHHhhhccCCeEE---EeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEEC
Confidence 0 001111 22355666 4999999 665542211111111 26788888888999666 5
Q ss_pred CCCCcc----cHHHHHHCCC--CCCceEEEeecccCC
Q 010244 462 GGIGIS----NASDVMKIGV--SNLKGVAVVSALFDR 492 (514)
Q Consensus 462 GGi~~~----~~~~~~~~Ga--~~~~gva~~~~i~~~ 492 (514)
||.+.+ .+..++++|+ . ||.+|+++|+.
T Consensus 249 gG~~~~~f~~~l~~A~~aGa~f~---Gvl~GRniwq~ 282 (340)
T PRK12858 249 AGVSPELFRRTLEFACEAGADFS---GVLCGRATWQD 282 (340)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcc---chhhhHHHHhh
Confidence 666543 4567888999 9 99999999964
No 278
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.20 E-value=0.0033 Score=56.58 Aligned_cols=52 Identities=27% Similarity=0.468 Sum_probs=46.8
Q ss_pred CCCE--EEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 455 KLPV--VAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 455 ~~pv--~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
.+|| ||.||+. |.++....++|++ ||-+||.+|...||.+.++++.++...+
T Consensus 207 rlPVV~FAaGGvaTPADAALmMQLGCd---GVFVGSgiFks~dP~k~a~aiVqAvthy 261 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPADAALMMQLGCD---GVFVGSGIFKSGDPVKRARAIVQAVTHY 261 (296)
T ss_pred CCceEEecccCcCChhHHHHHHHcCCC---eEEeccccccCCCHHHHHHHHHHHHHcc
Confidence 5665 7999995 9999999999999 9999999999999999999999887654
No 279
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.20 E-value=0.0083 Score=56.08 Aligned_cols=167 Identities=14% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCC-CCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCC----CCCCH-
Q 010244 318 RSITDAVKAALEGGATIIQLREKD-ADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQ----SDMPA- 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~----~~~~~- 391 (514)
+...+.++++++.|.+.+.+=-.. .+.+...++..+++ ++.+++++--.-.....-+||++-+++ .+...
T Consensus 14 ~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik----~~~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~i 89 (223)
T TIGR01768 14 SEADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALR----RYGLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWI 89 (223)
T ss_pred cccHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHh----ccCCCEEEeCCCccccCcCCCEEEEEEeecCCCchHH
Confidence 356678899999999999986655 45555555555554 456777763211222334688776654 22211
Q ss_pred -----H---HHHhh----c-------CCCcEEE----Eec--CCHHHHHHhhhCCCcEEEeccccCCCCCCC-CccCCHH
Q 010244 392 -----R---TARAL----L-------GPDKIIG----VSC--KTPEEAHQAWIDGANYIGCGGVYPTNTKAN-NLTVGLD 445 (514)
Q Consensus 392 -----~---~~~~~----~-------~~~~~ig----~s~--~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~ 445 (514)
. ..++. . .++..++ +-+ .+.+|+..+..+...|..+ |++.-....+ ..+...+
T Consensus 90 ig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-~~vYlE~gs~~g~~v~~e 168 (223)
T TIGR01768 90 IGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-PIIYLEAGSGAPEPVPPE 168 (223)
T ss_pred HhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCC-cEEEEEecCCCCCCcCHH
Confidence 0 01100 0 1111111 111 3555655554443443333 3332221111 2335688
Q ss_pred HHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 446 GLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 446 ~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
.++.+++.. ++|++.-|||. ++++.+++++||+ +|.+|+.+...
T Consensus 169 ~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD---~VVVGs~~~~d 214 (223)
T TIGR01768 169 LVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGAD---TIVTGNVIEED 214 (223)
T ss_pred HHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCC---EEEECcHHhhC
Confidence 999999888 89999999996 8999999999999 99999999853
No 280
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.19 E-value=0.0028 Score=63.76 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=67.3
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNA 469 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~ 469 (514)
.++...+...++ -.+.+++++..+.+.|+|+|.++.-.-.+- ...+..++.+.++++.. ++||++.|||. ..++
T Consensus 215 ~lr~~~~~Pviv-Kgv~~~~dA~~a~~~G~d~I~vsnhGGr~l--d~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di 291 (351)
T cd04737 215 FIAKISGLPVIV-KGIQSPEDADVAINAGADGIWVSNHGGRQL--DGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHV 291 (351)
T ss_pred HHHHHhCCcEEE-ecCCCHHHHHHHHHcCCCEEEEeCCCCccC--CCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHH
Confidence 444444333332 236799999999999999999963211110 11223467788887766 69999999996 7899
Q ss_pred HHHHHCCCCCCceEEEeecccC
Q 010244 470 SDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
.+++.+||+ +|.+++.++.
T Consensus 292 ~kaLalGA~---~V~iGr~~l~ 310 (351)
T cd04737 292 FKALASGAD---AVAVGRPVLY 310 (351)
T ss_pred HHHHHcCCC---EEEECHHHHH
Confidence 999999999 9999998873
No 281
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0023 Score=57.75 Aligned_cols=123 Identities=21% Similarity=0.132 Sum_probs=84.5
Q ss_pred HHHhCCCCeEEeCCCCCCHHHHHh----hcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHH
Q 010244 373 IALACDADGVHLGQSDMPARTARA----LLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLK 448 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~~~~~~~~----~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~ 448 (514)
.|...|||.|-|-...++...+.. +...++-.-+-+|+.+|..++.+.|+..|++-. -.-+ .-...+..-+
T Consensus 154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNN---RnL~--sFeVDlstTs 228 (289)
T KOG4201|consen 154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNN---RNLH--SFEVDLSTTS 228 (289)
T ss_pred HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecC---Cccc--eeeechhhHH
Confidence 466789999866443333222222 222344444669999999999999999996631 1111 0012333334
Q ss_pred HHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 449 TVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 449 ~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
.+.+.+ ++=++++-||. ++++..+.++|.. +|-+|.+++.+.||.+....+-
T Consensus 229 kL~E~i~kDvilva~SGi~tpdDia~~q~~GV~---avLVGEslmk~sDp~k~i~eL~ 283 (289)
T KOG4201|consen 229 KLLEGIPKDVILVALSGIFTPDDIAKYQKAGVK---AVLVGESLMKQSDPKKFIHELF 283 (289)
T ss_pred HHHhhCccceEEEeccCCCCHHHHHHHHHcCce---EEEecHHHHhccCHHHHHHHHh
Confidence 455544 56688888995 9999999999999 9999999999999998877654
No 282
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.18 E-value=0.0016 Score=65.15 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=58.3
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHH-CCCCCCceEEEeecccC
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMK-IGVSNLKGVAVVSALFD 491 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~-~Ga~~~~gva~~~~i~~ 491 (514)
+..+.+.|+|++.+.+.-..+.. .....|+.++++++..++||++.||| +++++.++++ .|++ ||.+|++++.
T Consensus 155 a~~le~~G~d~i~vh~rt~~~~~--~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gad---gVmiGR~~l~ 229 (321)
T PRK10415 155 AQLAEDCGIQALTIHGRTRACLF--NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGAD---ALMIGRAAQG 229 (321)
T ss_pred HHHHHHhCCCEEEEecCcccccc--CCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCC---EEEEChHhhc
Confidence 44567899999977653211111 12246899999999899999999999 5899999997 7999 9999999986
Q ss_pred CC
Q 010244 492 RE 493 (514)
Q Consensus 492 ~~ 493 (514)
.+
T Consensus 230 nP 231 (321)
T PRK10415 230 RP 231 (321)
T ss_pred CC
Confidence 54
No 283
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.18 E-value=0.0032 Score=63.89 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=68.0
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNA 469 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~ 469 (514)
.++...+ ..++--.+.+.+++..|.+.|+|.|.++.---.. . +..+..++.|.++++.+ ++||++.|||. ..++
T Consensus 247 ~lr~~~~-~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~-~-d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv 323 (383)
T cd03332 247 FLREWTD-LPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ-V-DGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADI 323 (383)
T ss_pred HHHHhcC-CCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC-C-CCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHH
Confidence 3444443 3344446889999999999999999997322111 1 11222457777887665 59999999996 7899
Q ss_pred HHHHHCCCCCCceEEEeeccc
Q 010244 470 SDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~ 490 (514)
...+.+||+ +|.+|+.|.
T Consensus 324 ~KALaLGA~---~v~iGr~~l 341 (383)
T cd03332 324 MKALALGAK---AVLIGRPYA 341 (383)
T ss_pred HHHHHcCCC---EEEEcHHHH
Confidence 999999999 999999987
No 284
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.15 E-value=0.02 Score=57.91 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=56.5
Q ss_pred HHhhhCC-CcEEEeccc-cCCC------CCCCC--ccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCC-CCCCce
Q 010244 415 HQAWIDG-ANYIGCGGV-YPTN------TKANN--LTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIG-VSNLKG 482 (514)
Q Consensus 415 ~~a~~~g-~d~v~~~~v-f~t~------~k~~~--~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~G-a~~~~g 482 (514)
....+.| +||+-++.- +.+. ..+.. ....++.++.+++.+++||++.||| +++.+.++++.| ++ +
T Consensus 235 ~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D---~ 311 (343)
T cd04734 235 ARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHAD---M 311 (343)
T ss_pred HHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCC---e
Confidence 4455677 899988532 2111 00111 1123677788888889999999999 589999999866 88 9
Q ss_pred EEEeecccCCCCHHH
Q 010244 483 VAVVSALFDRECILP 497 (514)
Q Consensus 483 va~~~~i~~~~~~~~ 497 (514)
|++++.+...++...
T Consensus 312 V~~gR~~ladP~l~~ 326 (343)
T cd04734 312 VGMTRAHIADPHLVA 326 (343)
T ss_pred eeecHHhHhCccHHH
Confidence 999999998776543
No 285
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.14 E-value=0.003 Score=61.21 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=62.3
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCcc
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGIS 467 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~~ 467 (514)
.+|+.. +...+-+-+.|.+|+.++.+.|+|.|.+-. ..++.++++.+.. ++.+-+.|||+++
T Consensus 181 ~~r~~~-~~~kIeVEv~tleea~ea~~~GaDiI~lDn------------~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ 247 (277)
T TIGR01334 181 RLKQTA-PERKITVEADTIEQALTVLQASPDILQLDK------------FTPQQLHHLHERLKFFDHIPTLAAAGGINPE 247 (277)
T ss_pred HHHHhC-CCCCEEEECCCHHHHHHHHHcCcCEEEECC------------CCHHHHHHHHHHHhccCCCEEEEEECCCCHH
Confidence 344433 346688889999999999999999998864 2344444444332 5679999999999
Q ss_pred cHHHHHHCCCCCCceEEEeeccc
Q 010244 468 NASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
|+.++.++|++ .+.+|+-.+
T Consensus 248 ni~~ya~~GvD---~is~gal~~ 267 (277)
T TIGR01334 248 NIADYIEAGID---LFITSAPYY 267 (277)
T ss_pred HHHHHHhcCCC---EEEeCccee
Confidence 99999999999 987776433
No 286
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.12 E-value=0.016 Score=54.61 Aligned_cols=159 Identities=20% Similarity=0.172 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHh--CCCCeEEeCCCCCC-
Q 010244 320 ITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALA--CDADGVHLGQSDMP- 390 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~--~ga~gvhl~~~~~~- 390 (514)
..+.++...+.|++.+++-+=+... ........+.++++. +++.+.. +++.+.. .+++-|.++.....
T Consensus 38 P~~~a~~~~~~g~~~l~ivDLd~~~-~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~ 114 (221)
T TIGR00734 38 PDDAAKVIEEIGARFIYIADLDRIV-GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDI 114 (221)
T ss_pred HHHHHHHHHHcCCCEEEEEEccccc-CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCC
Confidence 3456666778888888885543221 111112223333433 3566543 2222221 25888877765432
Q ss_pred HHHHHhhcCCCcEEEEec-----------CCHHHHH-HhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCE
Q 010244 391 ARTARALLGPDKIIGVSC-----------KTPEEAH-QAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPV 458 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~-----------~~~~e~~-~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv 458 (514)
+..+++.. ..++..+ .++.++. .....|+-++ +.-+-...+ ....+++.++++++..++|+
T Consensus 115 p~~l~~~~---~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii-~tdI~~dGt---~~G~d~eli~~i~~~~~~pv 187 (221)
T TIGR00734 115 TELLRECY---TVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLI-VLDIHSVGT---MKGPNLELLTKTLELSEHPV 187 (221)
T ss_pred HHHHHHhh---hEEEEEeECCccccccccccHHHHHHHHHhcCCEEE-EEECCcccc---CCCCCHHHHHHHHhhCCCCE
Confidence 22232221 1222222 1344433 3345666333 322222222 23457899999999889999
Q ss_pred EEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 459 VAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 459 ~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
+|.|||+ ++++.++.+.|++ ++.++++|..
T Consensus 188 ia~GGi~s~ed~~~l~~~Ga~---~vivgsal~~ 218 (221)
T TIGR00734 188 MLGGGISGVEDLELLKEMGVS---AVLVATAVHK 218 (221)
T ss_pred EEeCCCCCHHHHHHHHHCCCC---EEEEhHHhhC
Confidence 9999996 8899999999999 9999999874
No 287
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.11 E-value=0.027 Score=52.16 Aligned_cols=158 Identities=19% Similarity=0.210 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEE-cCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCC----CCCCH-
Q 010244 318 RSITDAVKAALEGGATIIQLR-EKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQ----SDMPA- 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr-~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~----~~~~~- 391 (514)
+++.+.+.++.+.|.+.+.+- ..+.+.+...++++.+++ .+++++++--.-.....-+||++.+++ .+...
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~---~~~lPvilfp~~~~~i~~~aD~~~~~sllns~~~~~i 87 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKK---ITNLPVILFPGNVNGLSRYADAVFFMSLLNSADTYFI 87 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHh---hcCCCEEEECCCccccCcCCCEEEEEEeecCCCcchh
Confidence 345566678899999999995 333566777777666654 356788763222223334688776554 33221
Q ss_pred ----H-H---HHhh-----------cCCCcEEE----Eec---CCHHH----HHHhhhCCCcEEEeccccCCCCCCCCcc
Q 010244 392 ----R-T---ARAL-----------LGPDKIIG----VSC---KTPEE----AHQAWIDGANYIGCGGVYPTNTKANNLT 441 (514)
Q Consensus 392 ----~-~---~~~~-----------~~~~~~ig----~s~---~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~ 441 (514)
. . +++. ..++..++ +.+ .+++| +..|...|++++.+ -..+.- ..+
T Consensus 88 ~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L---e~~sGa--~~~ 162 (205)
T TIGR01769 88 VGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL---EAGSGA--SYP 162 (205)
T ss_pred hhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE---EcCCCC--CCC
Confidence 0 0 1111 11111111 111 24555 34556788998855 221111 233
Q ss_pred CCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEe
Q 010244 442 VGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 442 ~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~ 486 (514)
...+.++++++.+++|++.-|||+ ++.+.++++.||+ +|.+|
T Consensus 163 v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD---~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGAD---AIVTG 205 (205)
T ss_pred CCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCC---EEEeC
Confidence 568999999998899999999995 8999999999999 99875
No 288
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=97.11 E-value=0.059 Score=51.76 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=79.1
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccH
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNA 469 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~ 469 (514)
.+|.... ..++--.+.+.++++.|.+.|++=|++|.=..-+ -+..+..++.|.++.+.. .+|||.-||+. -.++
T Consensus 217 wLr~~T~-LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQ--lD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DV 293 (363)
T KOG0538|consen 217 WLRSITK-LPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQ--LDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDV 293 (363)
T ss_pred HHHhcCc-CCeEEEeecccHHHHHHHHhCCceEEEeCCCccc--cCcccchHHHHHHHHHHhcCceEEEEecCcccchHH
Confidence 3444332 3355556889999999999999999987522111 112345678888888876 79999999996 5789
Q ss_pred HHHHHCCCCCCceEEEeeccc------CCCCHHHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALF------DRECILPESKKLHAVLMDA 509 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~------~~~~~~~~~~~~~~~~~~~ 509 (514)
-.++.+||. +|-+|+-+. ......+..+-|++.+.-.
T Consensus 294 lKALALGAk---~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~t 336 (363)
T KOG0538|consen 294 LKALALGAK---GVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELT 336 (363)
T ss_pred HHHHhcccc---eEEecCchheeeccccchhHHHHHHHHHHHHHHH
Confidence 999999999 999999764 2334556666666555543
No 289
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=97.10 E-value=0.0083 Score=57.06 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=51.9
Q ss_pred HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeec
Q 010244 411 PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSA 488 (514)
Q Consensus 411 ~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~ 488 (514)
.+-++.+.+.|+|++ ++.. ..++ ....++.+++++ .++||++-|||+ .+++.++++.|++ +|.++++
T Consensus 155 ~~la~~l~~aG~d~i---hv~~--~~~g-~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD---~VmiGR~ 222 (233)
T cd02911 155 EELARLIEKAGADII---HVDA--MDPG-NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGAD---MVSVARA 222 (233)
T ss_pred HHHHHHHHHhCCCEE---EECc--CCCC-CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCC---EEEEcCC
Confidence 444667779999988 3322 1222 235688888876 589999999995 8999999999999 9999999
No 290
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.08 E-value=0.0043 Score=62.84 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=77.3
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-ccc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISN 468 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~ 468 (514)
..+++..+ ..++--.+.|.+++..+.+.|+|.|.++.---++-. ..+...+.+.++.+.. ++||++.|||. ..+
T Consensus 238 ~~lr~~~~-~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d--~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~D 314 (381)
T PRK11197 238 EWIRDFWD-GPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD--GVLSSARALPAIADAVKGDITILADSGIRNGLD 314 (381)
T ss_pred HHHHHhCC-CCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCC--CcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHH
Confidence 34555543 445556789999999999999999998754333211 1112356677766544 69999999996 789
Q ss_pred HHHHHHCCCCCCceEEEeecccCC------CCHHHHHHHHHHHHHH
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDR------ECILPESKKLHAVLMD 508 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~------~~~~~~~~~~~~~~~~ 508 (514)
+..++.+||+ +|.+|+.|... +.....++.+++.++.
T Consensus 315 i~KALaLGA~---~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~ 357 (381)
T PRK11197 315 VVRMIALGAD---TVLLGRAFVYALAAAGQAGVANLLDLIEKEMRV 357 (381)
T ss_pred HHHHHHcCcC---ceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999988732 2344445555555444
No 291
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.08 E-value=0.0072 Score=59.91 Aligned_cols=47 Identities=30% Similarity=0.565 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 442 VGLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 442 ~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
..++.+.++++.+ ++||++.|||. .+++.+++.+||+ +|.++++++.
T Consensus 237 ~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~---~V~i~ta~~~ 286 (299)
T cd02940 237 IALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGAS---VVQVCTAVMN 286 (299)
T ss_pred HHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCC---hheEceeecc
Confidence 4588899999988 89999999996 7999999999999 9999999986
No 292
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.08 E-value=0.03 Score=58.38 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=89.3
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhhcCceEEEcCcHHH----HHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 323 AVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCVHGVPLLINDRIDI----ALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~~~~~~----a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
-++.+.+.|++++=+=....+++.. .+.++++.+...-.-+-++++.+++. +.+++.|.|+|.... .....+..
T Consensus 269 da~~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e-~~~~~~~l 347 (454)
T PRK09427 269 DAKAAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE-DQAYIDAL 347 (454)
T ss_pred HHHHHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC-CHHHHHHH
Confidence 4667888999887764322232221 22233333222111245677877653 457789999996644 33333333
Q ss_pred cC---C--CcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHcCCCCEEEECCCCcccHHH
Q 010244 398 LG---P--DKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLASKLPVVAIGGIGISNASD 471 (514)
Q Consensus 398 ~~---~--~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~ 471 (514)
.. . ..+--....+..+. ....++||+++-. .. .+ .....|..+... ...|++..||++++|+.+
T Consensus 348 ~~~~~~~~~iikai~v~~~~~~--~~~~~~d~~LlDs----~~-GGtG~~~DW~~l~~~---~~~p~iLAGGL~peNV~~ 417 (454)
T PRK09427 348 REALPKTCQIWKAISVGDTLPA--RDLQHVDRYLLDN----GQ-GGTGQTFDWSLLPGQ---SLDNVLLAGGLNPDNCQQ 417 (454)
T ss_pred HhhcCCCCeEEEEeecCchhhh--hhhcCCCEEEEcC----CC-CCCCCccChHHhhhc---ccCCEEEECCCCHHHHHH
Confidence 21 1 12222223222221 1224589997643 11 11 233567665432 267999999999999999
Q ss_pred HHHCCCCCCceEEEeecccCC
Q 010244 472 VMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 472 ~~~~Ga~~~~gva~~~~i~~~ 492 (514)
++..+.. ||=+.|.+=..
T Consensus 418 ai~~~P~---gVDVsSGVE~~ 435 (454)
T PRK09427 418 AAQLGCA---GLDFNSGVESA 435 (454)
T ss_pred HHhcCCC---EEEeCCcccCC
Confidence 9999999 99999999754
No 293
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.06 E-value=0.021 Score=58.07 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=56.5
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCC-CCCCceEEEeecccCC
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIG-VSNLKGVAVVSALFDR 492 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~G-a~~~~gva~~~~i~~~ 492 (514)
+....+.|+||+-++-... . ...+.....-+++++.+++||++.|+++++.+.++++.| ++ .|++++.++..
T Consensus 255 ~~~L~~~giD~i~vs~~~~---~-~~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D---~V~~gR~~iad 327 (362)
T PRK10605 255 IEQLGKRGIAYLHMSEPDW---A-GGEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLID---AVAFGRDYIAN 327 (362)
T ss_pred HHHHHHcCCCEEEeccccc---c-CCccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCC---EEEECHHhhhC
Confidence 3455567999997763210 0 111223455577777789999999999999999999988 78 99999999977
Q ss_pred CCHHH
Q 010244 493 ECILP 497 (514)
Q Consensus 493 ~~~~~ 497 (514)
+|...
T Consensus 328 Pd~~~ 332 (362)
T PRK10605 328 PDLVA 332 (362)
T ss_pred ccHHH
Confidence 66543
No 294
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=97.01 E-value=0.0062 Score=61.41 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=68.1
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-ccc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISN 468 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~ 468 (514)
..+++..+...++ -.+.+++.+..+.+.|+|+|.+|.---.+-. ..+..++.|.++++.. ++||++-|||. ..+
T Consensus 221 ~~l~~~~~~Pviv-KGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~--~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~D 297 (367)
T TIGR02708 221 EEIAGYSGLPVYV-KGPQCPEDADRALKAGASGIWVTNHGGRQLD--GGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQH 297 (367)
T ss_pred HHHHHhcCCCEEE-eCCCCHHHHHHHHHcCcCEEEECCcCccCCC--CCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHH
Confidence 3445544434333 3567899999999999999988643322111 1223478888888765 59999999996 788
Q ss_pred HHHHHHCCCCCCceEEEeeccc
Q 010244 469 ASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+..++.+||+ +|.+++.+.
T Consensus 298 v~KaLalGAd---~V~igR~~l 316 (367)
T TIGR02708 298 VFKALASGAD---LVALGRPVI 316 (367)
T ss_pred HHHHHHcCCC---EEEEcHHHH
Confidence 9999999999 999999876
No 295
>PLN02979 glycolate oxidase
Probab=96.93 E-value=0.0075 Score=60.31 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=68.8
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-ccc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISN 468 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~ 468 (514)
..+|+..+.. ++--.+.+.+++.++.+.|+|.|.++.---.+. +..+..++.+.++++.. ++||++.|||. ..+
T Consensus 216 ~wlr~~~~~P-vivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~D 292 (366)
T PLN02979 216 QWLQTITKLP-ILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEVVKATQGRIPVFLDGGVRRGTD 292 (366)
T ss_pred HHHHhccCCC-EEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHH
Confidence 3455555433 444457899999999999999999976443221 11122356777776654 59999999996 788
Q ss_pred HHHHHHCCCCCCceEEEeeccc
Q 010244 469 ASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+...+.+||+ +|.+++.+.
T Consensus 293 i~KALALGAd---aV~iGrp~L 311 (366)
T PLN02979 293 VFKALALGAS---GIFIGRPVV 311 (366)
T ss_pred HHHHHHcCCC---EEEEcHHHH
Confidence 9999999999 999999887
No 296
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.92 E-value=0.015 Score=60.66 Aligned_cols=47 Identities=26% Similarity=0.498 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHcC---CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 442 VGLDGLKTVCLAS---KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 442 ~g~~~l~~~~~~~---~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
+.|+.+.++++.. ++||++.|||. .+++.+++.+||+ +|.++|+++.
T Consensus 237 ~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~---~Vqi~ta~~~ 287 (420)
T PRK08318 237 IALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAG---TVQVCTAAMQ 287 (420)
T ss_pred HHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCC---hheeeeeecc
Confidence 4578888888876 79999999996 8899999999999 9999999885
No 297
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.90 E-value=0.0026 Score=64.02 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=58.0
Q ss_pred CHHHHHHhhhCCCcEEEeccccCCCC--------CC----C-CccCCH---HHHHHHHH-cCCCCEEEECCC-CcccHHH
Q 010244 410 TPEEAHQAWIDGANYIGCGGVYPTNT--------KA----N-NLTVGL---DGLKTVCL-ASKLPVVAIGGI-GISNASD 471 (514)
Q Consensus 410 ~~~e~~~a~~~g~d~v~~~~vf~t~~--------k~----~-~~~~g~---~~l~~~~~-~~~~pv~a~GGi-~~~~~~~ 471 (514)
+++.++.+.+.|+|+|.++.-..|.- .+ . ....|. +.+.++++ ..++||++.||| +.+++.+
T Consensus 192 ~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~k 271 (333)
T TIGR02151 192 SKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAK 271 (333)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHH
Confidence 67889999999999999976443320 00 0 011232 44555555 358999999999 5899999
Q ss_pred HHHCCCCCCceEEEeecccC
Q 010244 472 VMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 472 ~~~~Ga~~~~gva~~~~i~~ 491 (514)
++.+||+ +|++++.++.
T Consensus 272 aLalGAd---~V~igr~~L~ 288 (333)
T TIGR02151 272 AIALGAD---AVGMARPFLK 288 (333)
T ss_pred HHHhCCC---eehhhHHHHH
Confidence 9999999 9999999883
No 298
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.86 E-value=0.013 Score=54.01 Aligned_cols=144 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred HHHHHHHhCCCCEEEEEcC----CCCHHHHHHHHHHHHHHHhhcCceEE--Ec-----------------CcHHHHHhCC
Q 010244 322 DAVKAALEGGATIIQLREK----DADTRGFLEAAKACLQICCVHGVPLL--IN-----------------DRIDIALACD 378 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~----~~~~~~~~~~~~~~~~~~~~~~~~l~--v~-----------------~~~~~a~~~g 378 (514)
+-+..+.++|++-|+|-.. ..+|.. .+++.+ .+..++++. |. ++.+.+.++|
T Consensus 11 ~~a~~A~~~GAdRiELc~~l~~GGlTPS~--g~i~~~---~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~G 85 (201)
T PF03932_consen 11 EDALAAEAGGADRIELCSNLEVGGLTPSL--GLIRQA---REAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELG 85 (201)
T ss_dssp HHHHHHHHTT-SEEEEEBTGGGT-B---H--HHHHHH---HHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEECCCccCCCcCcCH--HHHHHH---HhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcC
Confidence 3456778999999999552 222221 222222 224455553 31 2466778999
Q ss_pred CCeEEeCCCC----CCHHHHHhhc--CCCcEEEEecC-------CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCH
Q 010244 379 ADGVHLGQSD----MPARTARALL--GPDKIIGVSCK-------TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGL 444 (514)
Q Consensus 379 a~gvhl~~~~----~~~~~~~~~~--~~~~~ig~s~~-------~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~ 444 (514)
++|+.++.-+ .+....++.. ..+..+. .| ++.+ +....++|+|.|+.|---+ ...-|+
T Consensus 86 adG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~t--FHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~------~a~~g~ 157 (201)
T PF03932_consen 86 ADGFVFGALTEDGEIDEEALEELIEAAGGMPVT--FHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP------TALEGI 157 (201)
T ss_dssp -SEEEE--BETTSSB-HHHHHHHHHHHTTSEEE--E-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS------STTTCH
T ss_pred CCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEE--EeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC------CHHHHH
Confidence 9999988633 2222222111 1133322 34 4554 4455588999998764222 223588
Q ss_pred HHHHHHHHcC--CCCEEEECCCCcccHHHHHH-CCCC
Q 010244 445 DGLKTVCLAS--KLPVVAIGGIGISNASDVMK-IGVS 478 (514)
Q Consensus 445 ~~l~~~~~~~--~~pv~a~GGi~~~~~~~~~~-~Ga~ 478 (514)
+.|+++.+.. .+.|++-|||+++|++.+++ +|+.
T Consensus 158 ~~L~~lv~~a~~~i~Im~GgGv~~~nv~~l~~~tg~~ 194 (201)
T PF03932_consen 158 ENLKELVEQAKGRIEIMPGGGVRAENVPELVEETGVR 194 (201)
T ss_dssp HHHHHHHHHHTTSSEEEEESS--TTTHHHHHHHHT-S
T ss_pred HHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHhhCCe
Confidence 9999997764 67899999999999999988 8877
No 299
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.83 E-value=0.0041 Score=60.12 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=61.1
Q ss_pred CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
++.| ++...+.|+|.+ ++.+...-.......++.++++++..++||++-|||. .+++.+++.+|++ ++.+|+
T Consensus 31 dp~~~a~~~~~~G~~~l---~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~---~vivgt 104 (254)
T TIGR00735 31 DPVELAQRYDEEGADEL---VFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGAD---KVSINT 104 (254)
T ss_pred CHHHHHHHHHHcCCCEE---EEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCC---EEEECh
Confidence 6665 555557899999 4444433222333568889999988899999999997 8999999999999 999999
Q ss_pred cccCCC
Q 010244 488 ALFDRE 493 (514)
Q Consensus 488 ~i~~~~ 493 (514)
.++...
T Consensus 105 ~~~~~p 110 (254)
T TIGR00735 105 AAVKNP 110 (254)
T ss_pred hHhhCh
Confidence 998644
No 300
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.80 E-value=0.0051 Score=59.10 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=60.8
Q ss_pred CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
++.| ++...+.|+|.+.+-.+-...+ ..+..++.++++++..++||++.|||. .+++..+++.|++ ++.+++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~---~v~ig~ 101 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSE---GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGAD---KVSINS 101 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccc---cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCc---eEEECc
Confidence 5544 5566689999886655443222 233468899999998899999999997 7899999999999 999999
Q ss_pred cccCCC
Q 010244 488 ALFDRE 493 (514)
Q Consensus 488 ~i~~~~ 493 (514)
.++...
T Consensus 102 ~~~~~p 107 (243)
T cd04731 102 AAVENP 107 (243)
T ss_pred hhhhCh
Confidence 999644
No 301
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=96.70 E-value=0.005 Score=57.01 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=84.5
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHH-HHHHHHHHHHHhhcCceEEEcCcHH----HHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGF-LEAAKACLQICCVHGVPLLINDRID----IALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~~~~~----~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
+-+..+.+.|++++=+=....+++.+ .+.++++....+..-+-++++...+ .+.+++.|.|+|.... +......
T Consensus 10 ~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-~~e~~~~ 88 (197)
T PF00697_consen 10 EDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE-SPEYIKL 88 (197)
T ss_dssp HHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG--HHHHHH
T ss_pred HHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC-CHHHHHH
Confidence 34666778888766653333333322 2334444433333323445566554 4556889999996655 3332222
Q ss_pred hcCCCcEEE--EecCC-HHHHHHhhhC-CCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCCcccHHH
Q 010244 397 LLGPDKIIG--VSCKT-PEEAHQAWID-GANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIGISNASD 471 (514)
Q Consensus 397 ~~~~~~~ig--~s~~~-~~e~~~a~~~-g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~~~~~ 471 (514)
. .....+. ..... ...+..+... ..||++|= +..........|+.++.+.... +.|++..|||+++|+.+
T Consensus 89 l-~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD----~~~GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl~p~NV~~ 163 (197)
T PF00697_consen 89 L-RAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLD----SGSGGTGKTFDWSLLKKIVESYSPKPVILAGGLNPENVRE 163 (197)
T ss_dssp H-HTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEE----SSSTSSSS---GGGGCCCHHT-GTSTEEEESS--TTTHHH
T ss_pred h-hcCceEEEEEEeCCccchHHHHHhcccccEEeEc----cCCCcCCcccCHHHhhhhhhhcccCcEEEEcCCChHHHHH
Confidence 2 2222222 22222 2222222222 23999775 1111112345788887777643 79999999999999999
Q ss_pred HHH-CCCCCCceEEEeecccCC
Q 010244 472 VMK-IGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 472 ~~~-~Ga~~~~gva~~~~i~~~ 492 (514)
+++ .+.. ||=+.|.+=..
T Consensus 164 ai~~~~p~---gvDvsSGvE~~ 182 (197)
T PF00697_consen 164 AIRQVRPY---GVDVSSGVETS 182 (197)
T ss_dssp HHHHC--S---EEEESGGGEEE
T ss_pred HHHhcCce---EEEeCCccccC
Confidence 999 8999 99999999754
No 302
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.69 E-value=0.043 Score=51.08 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=74.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcC-----CCCHHHHHHHHHHHHHHHhhcCceEEE--cCcHHHHHhCCCCeEEeCCCCCCH
Q 010244 319 SITDAVKAALEGGATIIQLREK-----DADTRGFLEAAKACLQICCVHGVPLLI--NDRIDIALACDADGVHLGQSDMPA 391 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v--~~~~~~a~~~ga~gvhl~~~~~~~ 391 (514)
.....++.+++.|++.+-+-.+ +.+.++..+.+.++.+.|. +.++.+ .. + .+..
T Consensus 70 ~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~--------~---------~l~~ 130 (203)
T cd00959 70 VKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILET--------G---------LLTD 130 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEec--------C---------CCCH
Confidence 3445578899999998888444 3345556666777777775 554433 11 1 0011
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHH
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNAS 470 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~ 470 (514)
.++.+ -++.+.+.|+|||=.+.-|. .+++.+-..+.+.+..+ .++||.+.|||. .+.+.
T Consensus 131 ~~i~~----------------a~ria~e~GaD~IKTsTG~~---~~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l 190 (203)
T cd00959 131 EEIIK----------------ACEIAIEAGADFIKTSTGFG---PGGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDAL 190 (203)
T ss_pred HHHHH----------------HHHHHHHhCCCEEEcCCCCC---CCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHH
Confidence 11211 26678899999996654443 12222222344444444 479999999997 67788
Q ss_pred HHHHCCCC
Q 010244 471 DVMKIGVS 478 (514)
Q Consensus 471 ~~~~~Ga~ 478 (514)
+++.+|++
T Consensus 191 ~~~~~g~~ 198 (203)
T cd00959 191 AMIEAGAT 198 (203)
T ss_pred HHHHhChh
Confidence 89999988
No 303
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=96.68 E-value=0.054 Score=55.37 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=44.0
Q ss_pred CHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEeecccCCCCHHH
Q 010244 443 GLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVSALFDRECILP 497 (514)
Q Consensus 443 g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~~i~~~~~~~~ 497 (514)
.++..+++++..++||++.|||+ ++.+.++++.| +| +|++++.++..++...
T Consensus 277 ~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D---~V~~gR~~ladP~l~~ 330 (370)
T cd02929 277 QEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILD---LIGAARPSIADPFLPK 330 (370)
T ss_pred cHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCC---eeeechHhhhCchHHH
Confidence 36777788888899999999995 88899999987 88 9999999998766543
No 304
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=96.67 E-value=0.034 Score=52.66 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=66.3
Q ss_pred cHHHHHhCCCCeEEeCCCC----CCHHHHHhhcCCCcEEEEecC-------CHHH-HHHhhhCCCcEEEeccccCCCCCC
Q 010244 370 RIDIALACDADGVHLGQSD----MPARTARALLGPDKIIGVSCK-------TPEE-AHQAWIDGANYIGCGGVYPTNTKA 437 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~----~~~~~~~~~~~~~~~ig~s~~-------~~~e-~~~a~~~g~d~v~~~~vf~t~~k~ 437 (514)
+.+.+.++|+||+.++.-+ .+....++....-.-..+..| ++.+ +....++|+|-|+.|---+
T Consensus 78 di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~----- 152 (248)
T PRK11572 78 DIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ----- 152 (248)
T ss_pred HHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC-----
Confidence 4667889999999887643 233222222111111112233 4444 5557789999997764222
Q ss_pred CCccCCHHHHHHHHHcC-CCCEEEECCCCcccHHHHHHCCCC
Q 010244 438 NNLTVGLDGLKTVCLAS-KLPVVAIGGIGISNASDVMKIGVS 478 (514)
Q Consensus 438 ~~~~~g~~~l~~~~~~~-~~pv~a~GGi~~~~~~~~~~~Ga~ 478 (514)
...-|++.|+++.+.. ..-|++-|||+++|+.++.++|+.
T Consensus 153 -~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~ 193 (248)
T PRK11572 153 -DAEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVR 193 (248)
T ss_pred -CHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 1234788888888755 333999999999999999999988
No 305
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=96.66 E-value=0.027 Score=51.94 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCCEEEEEcC------CCCHHHHHHHHHHHHHHHhhcCceEEE-----------c--------CcHHHHHh
Q 010244 322 DAVKAALEGGATIIQLREK------DADTRGFLEAAKACLQICCVHGVPLLI-----------N--------DRIDIALA 376 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~------~~~~~~~~~~~~~~~~~~~~~~~~l~v-----------~--------~~~~~a~~ 376 (514)
+.+..+.++|++-|+|=.. +++.-- ++..++...+++.+ + ++++.+.+
T Consensus 12 ~~l~~A~~~GAdRiELC~~La~GG~TPSyG~-------~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~ 84 (241)
T COG3142 12 EGLLAAQAAGADRIELCDALAEGGLTPSYGV-------IKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARE 84 (241)
T ss_pred hhHHHHHHcCCceeehhhccccCCCCCCHHH-------HHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHHHHH
Confidence 4567788889998888443 233221 11122223444432 2 35788999
Q ss_pred CCCCeEEeCCCC----CCHHHHHhhcCCCcEEEEecC-------CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCH
Q 010244 377 CDADGVHLGQSD----MPARTARALLGPDKIIGVSCK-------TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGL 444 (514)
Q Consensus 377 ~ga~gvhl~~~~----~~~~~~~~~~~~~~~ig~s~~-------~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~ 444 (514)
+|++||.++..+ .+....++......-++++.| ++.+ +..+.++|+.-|+.|.-- .....|+
T Consensus 85 lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~------~sa~eg~ 158 (241)
T COG3142 85 LGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK------ASALEGL 158 (241)
T ss_pred cCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc------CchhhhH
Confidence 999999987633 344444444333334455666 5554 556779999999765311 1234688
Q ss_pred HHHHHHHHcC--CCCEEEECCCCcccHHHH-HHCCCC
Q 010244 445 DGLKTVCLAS--KLPVVAIGGIGISNASDV-MKIGVS 478 (514)
Q Consensus 445 ~~l~~~~~~~--~~pv~a~GGi~~~~~~~~-~~~Ga~ 478 (514)
+.++++.+.. .+.|++-|||+++|+..+ ...|+.
T Consensus 159 ~~l~~li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~ 195 (241)
T COG3142 159 DLLKRLIEQAKGRIIIMAGAGVRAENIAELVLLTGVT 195 (241)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCch
Confidence 9999998776 577999999999999998 557765
No 306
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.65 E-value=0.12 Score=50.36 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=100.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCC-CCCCHHHHHhhcC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQ-SDMPARTARALLG 399 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~-~~~~~~~~~~~~~ 399 (514)
.+.+.++++.|.+.|.+--...+.++-.+.-+++.++|+.+|+.+-.. +| |++. .+....
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaE--------lG----~vgg~ed~~~~------- 147 (283)
T PRK07998 87 FEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAE--------LG----AILGKEDDHVS------- 147 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------ec----cCCCccccccc-------
Confidence 467788999999999997778888788888899999999999876321 11 1111 111000
Q ss_pred CCcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHH
Q 010244 400 PDKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMK 474 (514)
Q Consensus 400 ~~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~ 474 (514)
+ ...-.+|+|+.+-. +.|+|.+.+ |.+.-.. | + +.+.++.++++.+.+++|++.=||-. .+++..+.+
T Consensus 148 -~---~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y-~-~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~ 220 (283)
T PRK07998 148 -E---ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLE-D-I-PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVN 220 (283)
T ss_pred -c---ccccCCHHHHHHHHHHhCcCeeehhccccccCC-C-C-CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHH
Confidence 0 01134788877644 689999855 2222211 1 1 55788999999999999999999875 578999999
Q ss_pred CCCCCCceEEEeeccc
Q 010244 475 IGVSNLKGVAVVSALF 490 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~ 490 (514)
.|+. .|=+++.+.
T Consensus 221 ~Gi~---KiNi~Tel~ 233 (283)
T PRK07998 221 YKVA---KVNIASDLR 233 (283)
T ss_pred cCCc---EEEECHHHH
Confidence 9999 999999875
No 307
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.65 E-value=0.0065 Score=58.71 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=61.9
Q ss_pred cCCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEE
Q 010244 408 CKTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 408 ~~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~ 485 (514)
..++.| ++...+.|+|.+.+.-.-... ......++.++++++..++||++-|||. .+++.++++.|++ +|.+
T Consensus 29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~---~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~---~Vii 102 (253)
T PRK02083 29 AGDPVELAKRYNEEGADELVFLDITASS---EGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD---KVSI 102 (253)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccc---ccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC---EEEE
Confidence 456666 445558899999554433322 1234678999999998899999999997 8999999999999 9999
Q ss_pred eecccCCC
Q 010244 486 VSALFDRE 493 (514)
Q Consensus 486 ~~~i~~~~ 493 (514)
++.++...
T Consensus 103 gt~~l~~p 110 (253)
T PRK02083 103 NSAAVANP 110 (253)
T ss_pred ChhHhhCc
Confidence 99998643
No 308
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.62 E-value=0.008 Score=59.77 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=58.2
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCC--ccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHH-CCCCCCceEEEeecc
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANN--LTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMK-IGVSNLKGVAVVSAL 489 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~--~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~-~Ga~~~~gva~~~~i 489 (514)
+..+.+.|+|++.+++--. .+.. ++..|+.++++++..++||++-||| +++++.++++ .|++ ||.+|+++
T Consensus 154 a~~l~~~Gvd~i~Vh~Rt~---~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D---gVmiGRg~ 227 (312)
T PRK10550 154 ADAVQQAGATELVVHGRTK---EDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD---AVMIGRGA 227 (312)
T ss_pred HHHHHhcCCCEEEECCCCC---ccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC---EEEEcHHh
Confidence 5566789999998865221 1222 2347899999999999999999999 5899999885 7899 99999999
Q ss_pred cCCC
Q 010244 490 FDRE 493 (514)
Q Consensus 490 ~~~~ 493 (514)
+..+
T Consensus 228 l~nP 231 (312)
T PRK10550 228 LNIP 231 (312)
T ss_pred HhCc
Confidence 8654
No 309
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.60 E-value=0.0072 Score=57.57 Aligned_cols=70 Identities=27% Similarity=0.137 Sum_probs=59.2
Q ss_pred HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeeccc
Q 010244 411 PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 411 ~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
.+-++.-.+.|++++ |+.+- .++ ..+.++++++..++||.+-|||+.+++..++++||+ .|.++|.++
T Consensus 41 ~~~A~~~~~~Ga~~l---HvVDL-----g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~---rVvIGS~av 108 (253)
T TIGR02129 41 SYYAKLYKDDGVKGC---HVIML-----GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGAS---HVIVTSWLF 108 (253)
T ss_pred HHHHHHHHHcCCCEE---EEEEC-----CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCC---EEEECcHHH
Confidence 345666668899999 77774 122 678999999988999999999999999999999999 999999888
Q ss_pred CC
Q 010244 491 DR 492 (514)
Q Consensus 491 ~~ 492 (514)
..
T Consensus 109 ~~ 110 (253)
T TIGR02129 109 TK 110 (253)
T ss_pred hC
Confidence 64
No 310
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=96.59 E-value=0.018 Score=58.03 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=68.9
Q ss_pred HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-ccc
Q 010244 392 RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISN 468 (514)
Q Consensus 392 ~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~ 468 (514)
..+|...+. .++--.+.+++++..|.+.|+|.|.++.---.+. +..+..++.|.++++.+ ++||++.|||. ..+
T Consensus 217 ~wlr~~~~~-PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql--d~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~D 293 (367)
T PLN02493 217 QWLQTITKL-PILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEVVKATQGRIPVFLDGGVRRGTD 293 (367)
T ss_pred HHHHhccCC-CEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHH
Confidence 345555443 3444456799999999999999999976443221 11122467777776654 59999999996 788
Q ss_pred HHHHHHCCCCCCceEEEeeccc
Q 010244 469 ASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+-..+.+||+ +|.+|+.+.
T Consensus 294 v~KALALGA~---aV~iGr~~l 312 (367)
T PLN02493 294 VFKALALGAS---GIFIGRPVV 312 (367)
T ss_pred HHHHHHcCCC---EEEEcHHHH
Confidence 9999999999 999999887
No 311
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=96.58 E-value=0.078 Score=53.69 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=56.3
Q ss_pred HHHhhhCC-CcEEEeccccCCCCCCC--C-ccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEee
Q 010244 414 AHQAWIDG-ANYIGCGGVYPTNTKAN--N-LTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVS 487 (514)
Q Consensus 414 ~~~a~~~g-~d~v~~~~vf~t~~k~~--~-~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~ 487 (514)
+....+.| +||+-++.-......+. . +..-....+.++....+|+++.|+|+ ++.+.++++.| +| .|++++
T Consensus 243 a~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD---lVa~gR 319 (363)
T COG1902 243 AKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRAD---LVAMGR 319 (363)
T ss_pred HHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCC---EEEech
Confidence 34455789 79997654322111100 1 11122445556666689999999986 88999999998 78 999999
Q ss_pred cccCCCCHHHHHH
Q 010244 488 ALFDRECILPESK 500 (514)
Q Consensus 488 ~i~~~~~~~~~~~ 500 (514)
.+...++....++
T Consensus 320 ~~ladP~~~~k~~ 332 (363)
T COG1902 320 PFLADPDLVLKAA 332 (363)
T ss_pred hhhcCccHHHHHH
Confidence 9998777555443
No 312
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=96.54 E-value=0.092 Score=49.37 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=51.4
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecc
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSAL 489 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i 489 (514)
+..+.+.|+|||-.+.-|. ..+..++.++.+++.. +++|-+.|||. .+++.+++++||+ -++..+++
T Consensus 142 ~~~~~~agadfIKTsTG~~------~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA~---riGtS~~~ 211 (221)
T PRK00507 142 CEIAKEAGADFVKTSTGFS------TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGAT---RLGTSAGV 211 (221)
T ss_pred HHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCcc---eEccCcHH
Confidence 4456789999997776663 1224577777777765 58999999996 7899999999999 88776543
No 313
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.54 E-value=0.061 Score=54.84 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=43.2
Q ss_pred CHHHHHHHHHcC------CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC-CC-HHHHHHHHHHHHH
Q 010244 443 GLDGLKTVCLAS------KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR-EC-ILPESKKLHAVLM 507 (514)
Q Consensus 443 g~~~l~~~~~~~------~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~-~~-~~~~~~~~~~~~~ 507 (514)
.+..+.++.+.+ ++||++.|||. .+++.+++.+||+ .|.++++++.. .+ +.+..+.|.+.++
T Consensus 252 Al~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs---~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 252 ALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGAD---TVQVCTGVMMHGYPLVKNLCAELQDFMK 322 (385)
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCC---ceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence 344444454443 48999999996 7899999999999 99999999864 22 2333444444433
No 314
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.53 E-value=0.011 Score=59.97 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=67.4
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cc
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-IS 467 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~ 467 (514)
...+++..+ ..++--.+.+++++..+.+.|+|+|.+|.---|+..- .+..++.|.++++.. ++||++.|||. ..
T Consensus 217 i~~~~~~~~-~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~--~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~ 293 (356)
T PF01070_consen 217 IEWIRKQWK-LPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDW--GPPTIDALPEIRAAVGDDIPIIADGGIRRGL 293 (356)
T ss_dssp HHHHHHHCS-SEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTT--S-BHHHHHHHHHHHHTTSSEEEEESS--SHH
T ss_pred HHHHhcccC-CceEEEecccHHHHHHHHhcCCCEEEecCCCcccCcc--ccccccccHHHHhhhcCCeeEEEeCCCCCHH
Confidence 344555553 3344455699999999999999999998755554322 223467777777754 69999999996 78
Q ss_pred cHHHHHHCCCCCCceEEEeecccC
Q 010244 468 NASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
++-..+.+||+ .|.+++.++.
T Consensus 294 Dv~kalaLGA~---~v~igr~~l~ 314 (356)
T PF01070_consen 294 DVAKALALGAD---AVGIGRPFLY 314 (356)
T ss_dssp HHHHHHHTT-S---EEEESHHHHH
T ss_pred HHHHHHHcCCC---eEEEccHHHH
Confidence 89999999999 9999998873
No 315
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=96.43 E-value=0.012 Score=59.16 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=53.9
Q ss_pred HHH-HHHhhhCCCcEEEeccccCCCC----------CCCC-----ccCCHHHHHHHHHcC--CCCEEEECCCC-cccHHH
Q 010244 411 PEE-AHQAWIDGANYIGCGGVYPTNT----------KANN-----LTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASD 471 (514)
Q Consensus 411 ~~e-~~~a~~~g~d~v~~~~vf~t~~----------k~~~-----~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~ 471 (514)
+.+ +..+.+.|+|.|.+..-+.... ..+. .+..+..+..+.+.. ++|+++.|||. .+++.+
T Consensus 226 i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e 305 (335)
T TIGR01036 226 LEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALE 305 (335)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHH
Confidence 444 4457789999997743222100 0011 122345566666655 69999999996 889999
Q ss_pred HHHCCCCCCceEEEeecccC
Q 010244 472 VMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 472 ~~~~Ga~~~~gva~~~~i~~ 491 (514)
++.+||+ .|+++++++.
T Consensus 306 ~l~aGA~---~Vqv~ta~~~ 322 (335)
T TIGR01036 306 KIRAGAS---LLQIYSGFIY 322 (335)
T ss_pred HHHcCCc---HHHhhHHHHH
Confidence 9999999 9999999875
No 316
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.36 E-value=0.0049 Score=61.89 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred HHHhhhCCCcEEEeccccCCC-------CC---CCCc-----cCCHHHHHHHHHcC--CCCEEEECCC-CcccHHHHHHC
Q 010244 414 AHQAWIDGANYIGCGGVYPTN-------TK---ANNL-----TVGLDGLKTVCLAS--KLPVVAIGGI-GISNASDVMKI 475 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~-------~k---~~~~-----~~g~~~l~~~~~~~--~~pv~a~GGi-~~~~~~~~~~~ 475 (514)
++.+.+.|+|+|.+..-+... .+ .+.+ +..++.++++++.+ ++||++.||| +.+++.+++.+
T Consensus 222 a~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~a 301 (327)
T cd04738 222 ADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRA 301 (327)
T ss_pred HHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHc
Confidence 455667899999764321100 00 0111 12367788888877 7999999999 58999999999
Q ss_pred CCCCCceEEEeecccC
Q 010244 476 GVSNLKGVAVVSALFD 491 (514)
Q Consensus 476 Ga~~~~gva~~~~i~~ 491 (514)
||+ .|.++++++.
T Consensus 302 GAd---~V~vg~~~~~ 314 (327)
T cd04738 302 GAS---LVQLYTGLVY 314 (327)
T ss_pred CCC---HHhccHHHHh
Confidence 999 9999999974
No 317
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.32 E-value=0.19 Score=49.71 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC-CCCHHHHHHHHHHHHH
Q 010244 444 LDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD-RECILPESKKLHAVLM 507 (514)
Q Consensus 444 ~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~-~~~~~~~~~~~~~~~~ 507 (514)
+..++++++.. ++||++.|||. .+++.+++.+||+ +|.++++++. .. ..++++.+.+.
T Consensus 230 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~---~Vqv~ta~~~~gp---~~~~~i~~~L~ 291 (294)
T cd04741 230 LGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGAS---AVQVGTALGKEGP---KVFARIEKELE 291 (294)
T ss_pred HHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCC---ceeEchhhhhcCc---hHHHHHHHHHH
Confidence 45556666767 49999999996 8999999999999 9999999985 33 24444444444
No 318
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.28 E-value=0.011 Score=59.47 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=59.3
Q ss_pred HHhhhCCCcEEEeccccCCCCC-CCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEeecccC
Q 010244 415 HQAWIDGANYIGCGGVYPTNTK-ANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVSALFD 491 (514)
Q Consensus 415 ~~a~~~g~d~v~~~~vf~t~~k-~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~~i~~ 491 (514)
....+.|+||+-++.-.....+ +..+...++..+++++..++||++.|+|+ ++.+.++++.| ++ .|++++.++.
T Consensus 234 ~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D---~V~~gR~~ia 310 (337)
T PRK13523 234 KWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRAD---LIFIGRELLR 310 (337)
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCC---hHHhhHHHHh
Confidence 4455789999988653211111 11222346777888888899999999995 88899999987 88 9999999998
Q ss_pred CCCHHHHH
Q 010244 492 RECILPES 499 (514)
Q Consensus 492 ~~~~~~~~ 499 (514)
.++....+
T Consensus 311 dP~~~~k~ 318 (337)
T PRK13523 311 NPYFPRIA 318 (337)
T ss_pred CccHHHHH
Confidence 77654433
No 319
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.23 E-value=0.019 Score=54.66 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=57.9
Q ss_pred CHHHH-HHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEA-HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~-~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
++.|+ +...+.|+|.+.+ ..-..........++.++++++..++|+++-|||+ ++++.+++++||+ .|.+++
T Consensus 30 dp~~~a~~~~~~g~d~l~v---~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad---~vvigs 103 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHV---VDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVS---RVIIGT 103 (234)
T ss_pred CHHHHHHHHHHcCCCEEEE---ECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC---EEEECc
Confidence 55554 4444789999944 43221111123468899999998899999999997 7999999999999 999999
Q ss_pred cccCC
Q 010244 488 ALFDR 492 (514)
Q Consensus 488 ~i~~~ 492 (514)
..+..
T Consensus 104 ~~l~d 108 (234)
T cd04732 104 AAVKN 108 (234)
T ss_pred hHHhC
Confidence 98854
No 320
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.15 E-value=0.48 Score=46.30 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=102.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--...+.++-.+..+++.++|+.+|+.+--. +| |++......... ..
T Consensus 87 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaE--------lG----~igg~ed~~~~~----~~ 150 (286)
T PRK12738 87 LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAE--------LG----RLGGVEDDMSVD----AE 150 (286)
T ss_pred HHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE--------EE----eeCCccCCcccc----cc
Confidence 457888999999999999889999998999999999999988866321 11 222211100000 00
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~ 475 (514)
. .--.+|+|+.+-. +-|+|.+.+ |.+.-... ..+.+.+++++++++.+++|++.=||-. .+++.++.+.
T Consensus 151 ~----~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~--~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~ 224 (286)
T PRK12738 151 S----AFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS--KTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIEL 224 (286)
T ss_pred h----hcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC--CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHc
Confidence 0 0034799887755 569999866 33332111 2355889999999999999999999875 6889999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|.. -|=+.+.+.
T Consensus 225 GI~---KiNi~T~l~ 236 (286)
T PRK12738 225 GVT---KVNVATELK 236 (286)
T ss_pred CCe---EEEeCcHHH
Confidence 999 999988875
No 321
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.13 E-value=0.2 Score=56.41 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=54.9
Q ss_pred HHhhhCCCcEEEecc-ccCCCCCCCC-ccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCC-CCCCceEEEeeccc
Q 010244 415 HQAWIDGANYIGCGG-VYPTNTKANN-LTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIG-VSNLKGVAVVSALF 490 (514)
Q Consensus 415 ~~a~~~g~d~v~~~~-vf~t~~k~~~-~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~G-a~~~~gva~~~~i~ 490 (514)
....+.|+|||-++. -+....++.. +.......+++++..++||++.|+|+ ++++.++++.| ++ +|++++.++
T Consensus 645 ~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D---~v~~gR~~l 721 (765)
T PRK08255 645 RAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRAD---LCALARPHL 721 (765)
T ss_pred HHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcc---eeeEcHHHH
Confidence 455678999998862 1211112211 11234556777777899999999995 88899999976 78 999999999
Q ss_pred CCCCH
Q 010244 491 DRECI 495 (514)
Q Consensus 491 ~~~~~ 495 (514)
..++.
T Consensus 722 ~dP~~ 726 (765)
T PRK08255 722 ADPAW 726 (765)
T ss_pred hCccH
Confidence 76653
No 322
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.11 E-value=0.017 Score=55.26 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=59.9
Q ss_pred CCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEe
Q 010244 409 KTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 409 ~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~ 486 (514)
.++.| ++.+.+.|+|++ ++..-..........++.++++++..++|+++-|||+ .+++..++++||+ +|.++
T Consensus 32 ~~~~e~a~~~~~~G~~~l---~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~---~v~iG 105 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETL---HLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVD---RVILG 105 (241)
T ss_pred CCHHHHHHHHHHcCCCEE---EEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCC---EEEEC
Confidence 46665 555668899999 5554221111223457889999998899999999998 7899999999999 99999
Q ss_pred ecccCCC
Q 010244 487 SALFDRE 493 (514)
Q Consensus 487 ~~i~~~~ 493 (514)
+..+...
T Consensus 106 s~~~~~~ 112 (241)
T PRK13585 106 TAAVENP 112 (241)
T ss_pred hHHhhCh
Confidence 9888543
No 323
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.10 E-value=0.52 Score=46.42 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=102.1
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--...+.++-.+..+++.++++.+|+.+--. +| |++......... ..
T Consensus 87 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaE--------lG----~vgg~ed~~~~~----~~ 150 (307)
T PRK05835 87 FESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAE--------LG----RLMGIEDNISVD----EK 150 (307)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------ec----ccCCccCCcccc----cc
Confidence 467889999999999999888899998999999999999988765321 11 122111000000 00
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cc---------
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-IS--------- 467 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~--------- 467 (514)
. .--.+|+|+.+-. +-|+|++.+ |.+.-....++.+.+.++.|+++++.+++|++.=||-. ++
T Consensus 151 ~----~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~ 226 (307)
T PRK05835 151 D----AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDA 226 (307)
T ss_pred c----ccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhh
Confidence 0 1134799987755 569999765 33332111012355899999999999999999999876 33
Q ss_pred -------------cHHHHHHCCCCCCceEEEeeccc
Q 010244 468 -------------NASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 468 -------------~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
++.++.+.|.. -|=+.+.+.
T Consensus 227 g~~~~~~~g~~~e~~~kai~~GI~---KiNi~T~l~ 259 (307)
T PRK05835 227 GGDLKGSKGVPFEFLQESVKGGIN---KVNTDTDLR 259 (307)
T ss_pred ccccccccCCCHHHHHHHHHcCce---EEEeChHHH
Confidence 78999999999 998888775
No 324
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.08 E-value=0.48 Score=46.32 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=102.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--...+.++-++.-+++.++++.+|+.+--. +| |++....... ..
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaE--------lG----~vgg~ed~~~------~~ 151 (286)
T PRK08610 90 FEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAE--------LG----TVGGQEDDVV------AD 151 (286)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------Ee----ccCCccCCCC------Cc
Confidence 456788999999999999999999998999999999999988766321 11 2221110000 00
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~ 475 (514)
. .--.+|+|+.+-. +-|+|.+.+ |.+.-.. + +.+.+.++.|+++.+.+++|++.=||-. .+++.++.+.
T Consensus 152 ~----~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y-~-~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~ 225 (286)
T PRK08610 152 G----IIYADPKECQELVEKTGIDALAPALGSVHGPY-K-GEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPF 225 (286)
T ss_pred c----cccCCHHHHHHHHHHHCCCEEEeecccccccc-C-CCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHC
Confidence 0 0124799987755 569999766 3333211 1 2356889999999998999999999875 5789999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|+. -|=+.+.+.
T Consensus 226 GI~---KiNi~T~l~ 237 (286)
T PRK08610 226 GTA---KINVNTENQ 237 (286)
T ss_pred CCe---EEEeccHHH
Confidence 999 998888874
No 325
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.07 E-value=0.37 Score=47.08 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=102.6
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--..++.++-.+.-+++.++++.+|+.+--. +| |++......... ..
T Consensus 87 ~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaE--------lG----~vgg~e~~~~~~----~~ 150 (284)
T PRK09195 87 FDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAE--------LG----RLGGQEDDLQVD----EA 150 (284)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------Ee----cccCcccCcccc----cc
Confidence 467899999999999998889999998999999999999988866321 11 222111000000 00
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~ 475 (514)
. .--.+|+|+.+=. +-|+|.+.+ |.+.-.. | +.+.+.++.|+++.+.+++|++.=||-. .+++.++.+.
T Consensus 151 ~----~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~-~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~ 224 (284)
T PRK09195 151 D----ALYTDPAQAREFVEATGIDSLAVAIGTAHGMY-K-GEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKL 224 (284)
T ss_pred c----ccCCCHHHHHHHHHHHCcCEEeeccCcccccc-C-CCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHc
Confidence 0 1134789887755 569999866 3222211 1 1345889999999998999999999765 6789999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|.. -|=+.+.+.
T Consensus 225 Gi~---KiNi~T~l~ 236 (284)
T PRK09195 225 GIC---KVNVATELK 236 (284)
T ss_pred CCe---EEEeCcHHH
Confidence 999 999988875
No 326
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.07 E-value=0.032 Score=56.14 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred HHHhhhCCCcEEEeccccC---CCC-CC--CCccCCHHHHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEE
Q 010244 414 AHQAWIDGANYIGCGGVYP---TNT-KA--NNLTVGLDGLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~---t~~-k~--~~~~~g~~~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~ 485 (514)
+..+.+.|+|++.++.--. ..+ +. ..++..|+.+.++++.. ++||++-|||+ ++++.++++ |++ ||.+
T Consensus 157 ~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aD---gVmI 232 (333)
T PRK11815 157 VDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVD---GVMI 232 (333)
T ss_pred HHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCC---EEEE
Confidence 4556688999998763211 000 11 12456799999999875 89999999995 899999887 688 9999
Q ss_pred eecccCCC
Q 010244 486 VSALFDRE 493 (514)
Q Consensus 486 ~~~i~~~~ 493 (514)
|++++..+
T Consensus 233 GRa~l~nP 240 (333)
T PRK11815 233 GRAAYHNP 240 (333)
T ss_pred cHHHHhCC
Confidence 99998544
No 327
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.01 E-value=0.52 Score=46.04 Aligned_cols=143 Identities=17% Similarity=0.264 Sum_probs=102.6
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--...+.++-.+.-+++.++|+.+|+.+--. +| |++........ .
T Consensus 90 ~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaE--------lG----~igg~ed~~~~-----~- 151 (285)
T PRK07709 90 FEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAE--------LG----TVGGQEDDVIA-----E- 151 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------Ee----ccCCccCCccc-----c-
Confidence 456778999999999999999999999999999999999988866431 11 22211100000 0
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~ 475 (514)
. .--.+|+|+.+=. +.|+|.+.+ |.+.-.. | +.+.+.++.|+++.+.+++|++.=||-. .+++..+.+.
T Consensus 152 ~----~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y-~-~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~ 225 (285)
T PRK07709 152 G----VIYADPAECKHLVEATGIDCLAPALGSVHGPY-K-GEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISL 225 (285)
T ss_pred c----ccCCCHHHHHHHHHHhCCCEEEEeecccccCc-C-CCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHc
Confidence 0 0135799987755 579999766 3333211 1 2345889999999998999999999865 5789999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|+. -|=+.+.+.
T Consensus 226 Gi~---KiNi~T~l~ 237 (285)
T PRK07709 226 GTS---KINVNTENQ 237 (285)
T ss_pred CCe---EEEeChHHH
Confidence 999 998888774
No 328
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.98 E-value=0.51 Score=46.04 Aligned_cols=145 Identities=15% Similarity=0.235 Sum_probs=102.6
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--..++.++-.+..+++.++++.+|+.+--. +| |++......... ..
T Consensus 85 ~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaE--------lG----~vgg~e~~~~~~----~~ 148 (282)
T TIGR01858 85 LDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAE--------LG----RLGGVEDDLSVD----EE 148 (282)
T ss_pred HHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE--------EE----ecCCccCCCccc----cc
Confidence 367889999999999998889999998999999999999988865321 11 222111100000 00
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~ 475 (514)
. ..-.+|+|+.+-. +-|+|.+.+ |.+.-.. | +.+.+.++.|+++++.+++|++.=||-. .+++..+.+.
T Consensus 149 ~----~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-k-~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~ 222 (282)
T TIGR01858 149 D----ALYTDPQEAKEFVEATGVDSLAVAIGTAHGLY-K-KTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIEL 222 (282)
T ss_pred h----hccCCHHHHHHHHHHHCcCEEecccCccccCc-C-CCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHc
Confidence 0 1134788877654 689999866 2222111 1 1345899999999999999999999875 6789999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|.. -|=+.+.+.
T Consensus 223 Gi~---KiNi~T~l~ 234 (282)
T TIGR01858 223 GIC---KVNVATELK 234 (282)
T ss_pred CCe---EEEeCcHHH
Confidence 999 998888875
No 329
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=95.97 E-value=0.031 Score=56.51 Aligned_cols=104 Identities=26% Similarity=0.350 Sum_probs=64.0
Q ss_pred HHHhhcCCCcEEEE--ecC-------CHHHH----HHhhhCCCcEEEec------cccCCCCCCCCccCC--HHHHHHHH
Q 010244 393 TARALLGPDKIIGV--SCK-------TPEEA----HQAWIDGANYIGCG------GVYPTNTKANNLTVG--LDGLKTVC 451 (514)
Q Consensus 393 ~~~~~~~~~~~ig~--s~~-------~~~e~----~~a~~~g~d~v~~~------~vf~t~~k~~~~~~g--~~~l~~~~ 451 (514)
.+|+..+.+..+|+ |.. +.+|. ....+.|.|++-++ ...+....+.....+ ++..+.++
T Consensus 208 aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik 287 (341)
T PF00724_consen 208 AIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIK 287 (341)
T ss_dssp HHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHH
T ss_pred HHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhh
Confidence 34455566776664 333 13343 44556677766321 112222222222222 46677777
Q ss_pred HcCCCCEEEECCCCcc-cHHHHHHCC-CCCCceEEEeecccCCCCHHHHH
Q 010244 452 LASKLPVVAIGGIGIS-NASDVMKIG-VSNLKGVAVVSALFDRECILPES 499 (514)
Q Consensus 452 ~~~~~pv~a~GGi~~~-~~~~~~~~G-a~~~~gva~~~~i~~~~~~~~~~ 499 (514)
+..++||++.|||+.. .+.++++.| +| .|++++.+...+|....+
T Consensus 288 ~~~~~pvi~~G~i~~~~~ae~~l~~g~~D---lV~~gR~~ladPd~~~k~ 334 (341)
T PF00724_consen 288 KAVKIPVIGVGGIRTPEQAEKALEEGKAD---LVAMGRPLLADPDLPNKA 334 (341)
T ss_dssp HHHSSEEEEESSTTHHHHHHHHHHTTSTS---EEEESHHHHH-TTHHHHH
T ss_pred hhcCceEEEEeeecchhhhHHHHhcCCce---EeeccHHHHhCchHHHHH
Confidence 7779999999999854 488888877 77 999999999877765544
No 330
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.96 E-value=0.024 Score=53.92 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCHHHHHHhh-h-CCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEE
Q 010244 409 KTPEEAHQAW-I-DGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 409 ~~~~e~~~a~-~-~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~ 485 (514)
.+|.|+.+.+ + .|+|.+ ++++-+.-........+.++++++.+.+|+.+-|||. .+++..++.+|++ -+.+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l---~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~---kvvi 104 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRI---HIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGIN---YCIV 104 (234)
T ss_pred CCHHHHHHHHHhccCCCEE---EEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCC---EEEE
Confidence 5777765555 4 489999 7776543322233568899999998899999999996 7999999999999 9999
Q ss_pred eecccCCC
Q 010244 486 VSALFDRE 493 (514)
Q Consensus 486 ~~~i~~~~ 493 (514)
++..+.+.
T Consensus 105 gt~a~~~~ 112 (234)
T PRK13587 105 GTKGIQDT 112 (234)
T ss_pred CchHhcCH
Confidence 99887543
No 331
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.93 E-value=0.57 Score=45.80 Aligned_cols=145 Identities=14% Similarity=0.235 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--..++.++-.+..+++.++++.+|+.+--. +| |++......... .
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaE--------lG----~igg~e~~~~~~-----~ 149 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAE--------LG----RLGGQEDDLVVD-----E 149 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------Ee----eccCccCCcccc-----c
Confidence 467889999999999999889999998999999999999988866431 11 222111100000 0
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~ 475 (514)
. ...-.+|+|+.+-. +-|+|.+.+ |.+.-.. | +.+.+.++.|+++++.+++|++.=||-. .+++.++.+.
T Consensus 150 ~---~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y-~-~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~ 224 (284)
T PRK12737 150 K---DAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLY-K-GEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAISL 224 (284)
T ss_pred c---cccCCCHHHHHHHHHHhCCCEEeeccCcccccc-C-CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHC
Confidence 0 00134789877755 589999766 3332211 1 1345889999999998899999999875 6789999999
Q ss_pred CCCCCceEEEeeccc
Q 010244 476 GVSNLKGVAVVSALF 490 (514)
Q Consensus 476 Ga~~~~gva~~~~i~ 490 (514)
|.. -|=+.+.+.
T Consensus 225 Gi~---KiNi~T~l~ 236 (284)
T PRK12737 225 GIC---KVNVATELK 236 (284)
T ss_pred CCe---EEEeCcHHH
Confidence 999 999988875
No 332
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=95.89 E-value=0.2 Score=46.73 Aligned_cols=146 Identities=14% Similarity=0.227 Sum_probs=83.7
Q ss_pred CCceEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcC-----CCCHHHHHHHHHHHHHHHhhcCceEEE--cCcHH
Q 010244 300 SDLFLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREK-----DADTRGFLEAAKACLQICCVHGVPLLI--NDRID 372 (514)
Q Consensus 300 ~~~~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v--~~~~~ 372 (514)
...++--+.+-++-....+.-..-++.+++.|++-|-+-.+ +.+.+...+.+.++.+.|. +.++.+ ..
T Consensus 52 ~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKvIlE~--- 126 (211)
T TIGR00126 52 TEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKVIIET--- 126 (211)
T ss_pred CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEEEEec---
Confidence 34566666554432211122233356788999887766443 4455666666666776664 443332 11
Q ss_pred HHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHH
Q 010244 373 IALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCL 452 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~ 452 (514)
..+...++. .-.+.+.+.|+|||=.|.-|.+ .+++......+++...
T Consensus 127 --------------~~L~~~ei~----------------~a~~ia~eaGADfvKTsTGf~~---~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 127 --------------GLLTDEEIR----------------KACEICIDAGADFVKTSTGFGA---GGATVEDVRLMRNTVG 173 (211)
T ss_pred --------------CCCCHHHHH----------------HHHHHHHHhCCCEEEeCCCCCC---CCCCHHHHHHHHHHhc
Confidence 111111111 1256677899999976655541 2233223344444433
Q ss_pred cCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 453 ASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 453 ~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
. ++||-|.|||. .+++.+++++|++ -++..+
T Consensus 174 ~-~v~IKaaGGirt~~~a~~~i~aGa~---riGts~ 205 (211)
T TIGR00126 174 D-TIGVKASGGVRTAEDAIAMIEAGAS---RIGASA 205 (211)
T ss_pred c-CCeEEEeCCCCCHHHHHHHHHHhhH---HhCcch
Confidence 2 79999999997 6788899999999 665543
No 333
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.89 E-value=0.093 Score=55.64 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhc-CceEEEc-----CcHHHHHhCCCCeEEeCCCC----
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVH-GVPLLIN-----DRIDIALACDADGVHLGQSD---- 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~-----~~~~~a~~~ga~gvhl~~~~---- 388 (514)
+..+.+++++++|++.|++...+.......+.++++++ .+ +++++.- +..+.+.++|||++-++-..
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~---~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~ 317 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS---NYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSIC 317 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh---hCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCccc
Confidence 34788999999999999998765555544555555554 33 4566541 35667889999999643110
Q ss_pred ---------CCH----HHHH-hhcCCCcEEEE--ecCCHHHHHHhhhCCCcEEEeccccCCC
Q 010244 389 ---------MPA----RTAR-ALLGPDKIIGV--SCKTPEEAHQAWIDGANYIGCGGVYPTN 434 (514)
Q Consensus 389 ---------~~~----~~~~-~~~~~~~~ig~--s~~~~~e~~~a~~~g~d~v~~~~vf~t~ 434 (514)
.+. ..++ .....+..+.+ .+.++.++.+|..+|||.|.+|..|...
T Consensus 318 ~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 318 ITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT 379 (495)
T ss_pred ccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence 010 1121 12223344444 6889999999999999999999988643
No 334
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.85 E-value=0.75 Score=44.98 Aligned_cols=144 Identities=17% Similarity=0.247 Sum_probs=102.0
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCCC
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPD 401 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~ 401 (514)
+.+.++++.|.+.|.+--..++.++-.+..+++.++|+.+|+.+--. +| |++......... ..
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaE--------lG----~vgg~e~~~~~~-----~~ 150 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAE--------LG----KIGGTEDDITVD-----ER 150 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------ee----ecCCccCCCCcc-----cc
Confidence 56889999999999999999999999999999999999988766331 11 222111000000 00
Q ss_pred cEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHCC
Q 010244 402 KIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKIG 476 (514)
Q Consensus 402 ~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~G 476 (514)
...-.+|+|+.+-. +-|+|.+.+ |.+.-.. | +.+.+.++.|+++++.+++|++.=||-. .+++.++.+.|
T Consensus 151 ---~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y-~-~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G 225 (284)
T PRK12857 151 ---EAAMTDPEEARRFVEETGVDALAIAIGTAHGPY-K-GEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLG 225 (284)
T ss_pred ---hhhcCCHHHHHHHHHHHCCCEEeeccCcccccc-C-CCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 00034788887765 579999766 3332211 1 1355889999999998999999988764 68899999999
Q ss_pred CCCCceEEEeeccc
Q 010244 477 VSNLKGVAVVSALF 490 (514)
Q Consensus 477 a~~~~gva~~~~i~ 490 (514)
.. -|=+.+.+.
T Consensus 226 i~---KiNi~T~~~ 236 (284)
T PRK12857 226 VR---KVNIDTNIR 236 (284)
T ss_pred Ce---EEEeCcHHH
Confidence 99 999988875
No 335
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.82 E-value=0.22 Score=46.33 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCC-CCHHHHHHHHHHHHHHHhhcCceEEEcC-cHHHHHhCCCCeEEeCC----CCCCH
Q 010244 318 RSITDAVKAALEGGATIIQLREKD-ADTRGFLEAAKACLQICCVHGVPLLIND-RIDIALACDADGVHLGQ----SDMPA 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~-~~~~~~~~~~~~~~~~~~~~~~~l~v~~-~~~~a~~~ga~gvhl~~----~~~~~ 391 (514)
+...+.++.++++|.+.|.+--.. .+.++..+.++++++ ++++++++-- +... ..-+||++.+++ .+...
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~---~~~lPvilfP~~~~~-is~~aDavff~svLNS~n~~~ 103 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKE---RTDLPVILFPGSPSG-ISPYADAVFFPSVLNSDNPYW 103 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHh---hcCCCEEEecCChhc-cCccCCeEEEEEEecCCCccc
Confidence 356788999999999999985543 344555555555543 7788887732 2222 222577664432 22110
Q ss_pred ---------HHHHhh-----------cCCCcEEEE----e-c-CCHHHHHHhhhCCCcEEEeccccCCCCCCCC-ccCCH
Q 010244 392 ---------RTARAL-----------LGPDKIIGV----S-C-KTPEEAHQAWIDGANYIGCGGVYPTNTKANN-LTVGL 444 (514)
Q Consensus 392 ---------~~~~~~-----------~~~~~~ig~----s-~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~-~~~g~ 444 (514)
....+. ..++..+|. - | .+.+++..++.+...|..+ |+|.-....++ .+...
T Consensus 104 i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~-~~~YlEagsga~~Pv~~ 182 (240)
T COG1646 104 IVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGM-PVVYLEAGSGAGDPVPV 182 (240)
T ss_pred ccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCC-eEEEEEecCCCCCCcCH
Confidence 001100 122333331 1 1 1456666665555555444 33332222222 34567
Q ss_pred HHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC
Q 010244 445 DGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 445 ~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
+.++++++. .|++.=|||. ++.+.++.++||| .|.+|..+...
T Consensus 183 e~v~~v~~~--~~LivGGGIrs~E~A~~~a~agAD---~IVtG~iiee~ 226 (240)
T COG1646 183 EMVSRVLSD--TPLIVGGGIRSPEQAREMAEAGAD---TIVTGTIIEED 226 (240)
T ss_pred HHHHHhhcc--ceEEEcCCcCCHHHHHHHHHcCCC---EEEECceeecC
Confidence 777766654 4999999996 7889999999999 99999988853
No 336
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.061 Score=53.66 Aligned_cols=118 Identities=20% Similarity=0.225 Sum_probs=82.9
Q ss_pred HHHHHhCCCCeEEeCCCCCC-------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEec----cccCCCCCCCC
Q 010244 371 IDIALACDADGVHLGQSDMP-------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG----GVYPTNTKANN 439 (514)
Q Consensus 371 ~~~a~~~ga~gvhl~~~~~~-------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~----~vf~t~~k~~~ 439 (514)
+++..++|.|.|.|.+.+.. +..+++.++.-.+++-.+-|.+++......|+|-+=+| .+--|+..-..
T Consensus 256 l~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~ 335 (503)
T KOG2550|consen 256 LDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMAC 335 (503)
T ss_pred HHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeec
Confidence 45556677777777655432 23455666666678888889999999999999997553 34444432211
Q ss_pred -ccCC--HHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccC
Q 010244 440 -LTVG--LDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 440 -~~~g--~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~ 491 (514)
.+-+ .=...+.+..+.+||+|-|||. ..++...+.+||+ .|-+|+.+-.
T Consensus 336 GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAs---tVMmG~lLAg 388 (503)
T KOG2550|consen 336 GRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGAS---TVMMGGLLAG 388 (503)
T ss_pred cCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCch---hheecceeee
Confidence 1122 2335566667899999999996 8999999999999 9998887763
No 337
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.75 E-value=0.46 Score=45.49 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcC-------------CCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEe
Q 010244 318 RSITDAVKAALEGGATIIQLREK-------------DADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHL 384 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl 384 (514)
+...+.++.+.+.|+..|.+-+. -.+.+++.+.++..++..... ..++|+-+.|. ...
T Consensus 84 ~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa--------~~~ 154 (243)
T cd00377 84 LNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDA--------LLA 154 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCc--------hhc
Confidence 35777788899999999999332 235666666555555544332 34444433221 111
Q ss_pred CCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC
Q 010244 385 GQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI 464 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi 464 (514)
+.... -...+-++.+.+.|||.+++-+.. ..+.++++.+..+.|++..-.-
T Consensus 155 ~~~~~------------------~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~ 205 (243)
T cd00377 155 GEEGL------------------DEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTP 205 (243)
T ss_pred cCCCH------------------HHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecC
Confidence 10000 012344677889999999764321 5688999999889998877443
Q ss_pred Cc--ccHHHHHHCCCCCCceEEEeeccc
Q 010244 465 GI--SNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 465 ~~--~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
.. -+..++.++|+. -+..+...+
T Consensus 206 ~~~~~~~~~l~~lG~~---~v~~~~~~~ 230 (243)
T cd00377 206 GGNLLTVAELAELGVR---RVSYGLALL 230 (243)
T ss_pred CCCCCCHHHHHHCCCe---EEEEChHHH
Confidence 34 578999999999 888887655
No 338
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.74 E-value=0.033 Score=52.29 Aligned_cols=167 Identities=15% Similarity=0.124 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCC----CCCCH--H-
Q 010244 320 ITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQ----SDMPA--R- 392 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~----~~~~~--~- 392 (514)
..+.++.+++.|.+.+.+=-.. ....+.+....+++. +++++++.-.-.....-+||++-+++ .+... .
T Consensus 21 ~~~~~~~~~~~gtDai~VGGS~-~~~~~d~vv~~ik~~---~~lPvilfPg~~~~vs~~aDail~~svlNs~n~~~iig~ 96 (230)
T PF01884_consen 21 PEEALEAACESGTDAIIVGGSD-TGVTLDNVVALIKRV---TDLPVILFPGSPSQVSPGADAILFPSVLNSRNPYWIIGA 96 (230)
T ss_dssp HHHHHHHHHCTT-SEEEEE-ST-HCHHHHHHHHHHHHH---SSS-EEEETSTCCG--TTSSEEEEEEETTBSSTTTTTHH
T ss_pred cHHHHHHHHhcCCCEEEECCCC-CccchHHHHHHHHhc---CCCCEEEeCCChhhcCcCCCEEEEEEEecCCCcchHhhH
Confidence 4566777789999999986555 233344444444443 67888774321122234688775543 23210 0
Q ss_pred ------HHHhhcCCCcEE-E---------------Ee--cCCHHHHHHhhh-----CCCcEEEeccccCCCCCCCCccCC
Q 010244 393 ------TARALLGPDKII-G---------------VS--CKTPEEAHQAWI-----DGANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 393 ------~~~~~~~~~~~i-g---------------~s--~~~~~e~~~a~~-----~g~d~v~~~~vf~t~~k~~~~~~g 443 (514)
..++.. ...++ | +. -++.+|+..+.. +|..++-+ .. -.++. ..
T Consensus 97 ~~~aa~~~~~~~-~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYL---Ea---GSGa~-~~ 168 (230)
T PF01884_consen 97 QVEAAPLIKKLG-LEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYL---EA---GSGAY-GP 168 (230)
T ss_dssp HHHHHHHCHHHH-CCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEE---E-----TTSS-S-
T ss_pred HHHHHHHHHhhc-ceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEE---Ee---CCCCC-CC
Confidence 011111 11111 1 01 124555444443 45555533 11 11111 12
Q ss_pred H-HHHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHH
Q 010244 444 L-DGLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKK 501 (514)
Q Consensus 444 ~-~~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~ 501 (514)
. +.+.+.++.. ++|++.-|||+ .+.+.++.++||| .|.+|..|....+..+..+.
T Consensus 169 v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD---~IVvGn~iee~~~~e~~~~~ 226 (230)
T PF01884_consen 169 VPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGAD---TIVVGNAIEEDPDLEEALET 226 (230)
T ss_dssp HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSS---EEEESCHHHHHH-HHHHHTH
T ss_pred ccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCC---EEEECCEEEEcchHHHHHHH
Confidence 2 5555555554 99999999996 7899999999999 99999999854443443333
No 339
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.73 E-value=0.64 Score=45.20 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=102.7
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCCC
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPD 401 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~ 401 (514)
+.+.++++.|.+.|.+--...+.++-++..+++.++|+.+|+.+-.. +| |++...... . ..
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaE--------lG----~i~g~e~~~--~-----~~ 143 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAE--------LG----RIGGEEDGV--V-----GD 143 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEE--------Ee----eecCccCCc--c-----cc
Confidence 56778999999999998888999999999999999999988866431 11 222111000 0 00
Q ss_pred cEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHHCC
Q 010244 402 KIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMKIG 476 (514)
Q Consensus 402 ~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~~G 476 (514)
...-.+|+|+.+-. +.|+|.+.+ |.+.-.. +.+.+.+.++.|+++.+.+++|++.=||-. .+++..+.+.|
T Consensus 144 ---~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y-~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G 219 (276)
T cd00947 144 ---EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAY-KGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLG 219 (276)
T ss_pred ---cccCCCHHHHHHHHHHHCCCEEEeccCcccccc-CCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 11134799888765 469999865 3333211 222455889999999999999999999875 57899999999
Q ss_pred CCCCceEEEeeccc
Q 010244 477 VSNLKGVAVVSALF 490 (514)
Q Consensus 477 a~~~~gva~~~~i~ 490 (514)
.. -|=+.+.+.
T Consensus 220 i~---KiNi~T~l~ 230 (276)
T cd00947 220 VC---KININTDLR 230 (276)
T ss_pred Ce---EEEeChHHH
Confidence 99 998888875
No 340
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=95.70 E-value=0.2 Score=46.91 Aligned_cols=100 Identities=9% Similarity=0.043 Sum_probs=68.8
Q ss_pred CcEEE-EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCcccHHHHHH
Q 010244 401 DKIIG-VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGISNASDVMK 474 (514)
Q Consensus 401 ~~~ig-~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~~~~~~~~~ 474 (514)
+..++ ..+.|++++..|.+.|++|| +|++.--...+ .-|.+.++++.+.+ +..|++.|=-++.++.++..
T Consensus 101 gi~v~~T~V~s~~Qa~~Aa~AGA~yv--sP~vgR~~~~g--~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~ 176 (211)
T cd00956 101 GIKTNVTAIFSAAQALLAAKAGATYV--SPFVGRIDDLG--GDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAAL 176 (211)
T ss_pred CCceeeEEecCHHHHHHHHHcCCCEE--EEecChHhhcC--CCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHH
Confidence 44444 45689999999999999995 45443211111 12556555555432 46688888889999999999
Q ss_pred CCCCCCceEEEeeccc----CCCCHHHHHHHHHHHHH
Q 010244 475 IGVSNLKGVAVVSALF----DRECILPESKKLHAVLM 507 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~----~~~~~~~~~~~~~~~~~ 507 (514)
+|++ .+-+.-.++ ..+-..+.++.|.+.|+
T Consensus 177 ~Gad---~vTv~~~vl~~l~~~~~t~~~v~~F~~d~~ 210 (211)
T cd00956 177 AGAD---AITLPPDVLEQLLKHPLTDKGVEKFLEDWQ 210 (211)
T ss_pred cCCC---EEEeCHHHHHHHhcCccHHHHHHHHHHHhh
Confidence 9999 998876665 34555677777776653
No 341
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.68 E-value=0.028 Score=53.26 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred CHHHHHHhhhCCCcEEEeccccCCC-CCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEAHQAWIDGANYIGCGGVYPTN-TKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~~~a~~~g~d~v~~~~vf~t~-~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|.|+.+.++..+|.+.+ ..-+ +..+ .+..++.++++++...+||.+-|||+ .+++..+++.|++ ++.+++
T Consensus 31 dp~~~a~~~~~~~~~l~i---vDldga~~g-~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~---~vivGt 103 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHV---VDLDGAFEG-KPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVE---NVIIGT 103 (228)
T ss_pred CHHHHHHHHHHhCCEEEE---EECcchhcC-CcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCC---EEEECc
Confidence 777766655444888844 3322 2222 22467889999888899999999997 7999999999999 999999
Q ss_pred ccc
Q 010244 488 ALF 490 (514)
Q Consensus 488 ~i~ 490 (514)
+.+
T Consensus 104 aa~ 106 (228)
T PRK04128 104 KAF 106 (228)
T ss_pred hhc
Confidence 887
No 342
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.048 Score=53.65 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=49.2
Q ss_pred cCCHHHHHHHHHcCC--CCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC-CC-HHHHHHHHHHHHHH
Q 010244 441 TVGLDGLKTVCLASK--LPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR-EC-ILPESKKLHAVLMD 508 (514)
Q Consensus 441 ~~g~~~l~~~~~~~~--~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~-~~-~~~~~~~~~~~~~~ 508 (514)
+..++.++++.+.++ +||+..|||. .+++.+.+.+||+ .|.++++++.. .. +.+..+.+.+.+++
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~---~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~ 294 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGAS---AVQVGTALIYKGPGIVKEIIKGLARWLEE 294 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCc---hheeeeeeeeeCchHHHHHHHHHHHHHHH
Confidence 345667777777764 9999999996 7889999999999 99999999954 32 34444455555544
No 343
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=95.61 E-value=0.044 Score=52.14 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=59.6
Q ss_pred CCHHHHHH-hhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEe
Q 010244 409 KTPEEAHQ-AWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 409 ~~~~e~~~-a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~ 486 (514)
.++.++.+ ..+.|+|.+.+.-+-.+ ..+ ....++.++++++.+++||++-|||. .+++..++++||+ +|.++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~--~~g-~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~---~vilg 103 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGA--KAG-KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVS---RVIIG 103 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcc--ccC-CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCC---EEEEC
Confidence 47777444 44789999966544111 111 22468889999888899999999997 6899999999999 99999
Q ss_pred ecccCCC
Q 010244 487 SALFDRE 493 (514)
Q Consensus 487 ~~i~~~~ 493 (514)
++++...
T Consensus 104 ~~~l~~~ 110 (233)
T PRK00748 104 TAAVKNP 110 (233)
T ss_pred chHHhCH
Confidence 9998643
No 344
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.61 E-value=0.15 Score=47.14 Aligned_cols=71 Identities=24% Similarity=0.355 Sum_probs=54.8
Q ss_pred HHHhhcCCCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHH
Q 010244 393 TARALLGPDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASD 471 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~ 471 (514)
.+++.+ ++..+|+.+ .|+++++.|.++|++|+ +||.+. .+.++. +...++|+++ |-.|+.++..
T Consensus 52 ~l~~~~-~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~~~-----------~~v~~~-~~~~~i~~iP-G~~TptEi~~ 116 (204)
T TIGR01182 52 LLRKEV-PDALIGAGTVLNPEQLRQAVDAGAQFI-VSPGLT-----------PELAKH-AQDHGIPIIP-GVATPSEIML 116 (204)
T ss_pred HHHHHC-CCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCCCC-----------HHHHHH-HHHcCCcEEC-CCCCHHHHHH
Confidence 444444 478899755 69999999999999999 566443 344444 4456899888 8889999999
Q ss_pred HHHCCCC
Q 010244 472 VMKIGVS 478 (514)
Q Consensus 472 ~~~~Ga~ 478 (514)
++++|++
T Consensus 117 A~~~Ga~ 123 (204)
T TIGR01182 117 ALELGIT 123 (204)
T ss_pred HHHCCCC
Confidence 9999999
No 345
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.57 E-value=0.11 Score=54.72 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhc-CceEEE-----cCcHHHHHhCCCCeEEeCC--C--C
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVH-GVPLLI-----NDRIDIALACDADGVHLGQ--S--D 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v-----~~~~~~a~~~ga~gvhl~~--~--~ 388 (514)
+..+.+++++++|++.|.+-..+.+.....+.++++++ .+ +++++. .+..+.+.++|+|++-++- . +
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~---~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~ 300 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK---TYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSIC 300 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH---hCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCC
Confidence 45677889999999999998876666656666665554 43 566665 2345677889999984331 0 0
Q ss_pred C---------C----HHHHHh-hcCCCcEEEE--ecCCHHHHHHhhhCCCcEEEeccccCCC
Q 010244 389 M---------P----ARTARA-LLGPDKIIGV--SCKTPEEAHQAWIDGANYIGCGGVYPTN 434 (514)
Q Consensus 389 ~---------~----~~~~~~-~~~~~~~ig~--s~~~~~e~~~a~~~g~d~v~~~~vf~t~ 434 (514)
. + ...+.+ ....+..+.+ .++++.++.+|+++|||.|.+|..|...
T Consensus 301 ~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 301 TTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred ccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 0 1 011211 1122333444 6899999999999999999999999643
No 346
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=95.53 E-value=0.05 Score=52.09 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=60.6
Q ss_pred CHHHHHHh-hhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEAHQA-WIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~~~a-~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|.|+.+. .+.|+|.+ ++++-+.-.+ .....+.++++++.+.+|+.+-|||. .+++..++++||+ -+.+|+
T Consensus 33 dp~~~a~~~~~~g~~~l---~ivDLd~~~g-~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~---kvviGs 105 (241)
T PRK14024 33 SPLDAALAWQRDGAEWI---HLVDLDAAFG-RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCA---RVNIGT 105 (241)
T ss_pred CHHHHHHHHHHCCCCEE---EEEeccccCC-CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCC---EEEECc
Confidence 77765544 47899999 6665443222 22457899999998899999999996 8999999999999 999999
Q ss_pred cccCCC
Q 010244 488 ALFDRE 493 (514)
Q Consensus 488 ~i~~~~ 493 (514)
+.+...
T Consensus 106 ~~l~~p 111 (241)
T PRK14024 106 AALENP 111 (241)
T ss_pred hHhCCH
Confidence 998643
No 347
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.49 E-value=0.072 Score=53.14 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=56.7
Q ss_pred HHHhhhCCCcEEEeccccC-CC--C-CC--CCccCCHHHHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEE
Q 010244 414 AHQAWIDGANYIGCGGVYP-TN--T-KA--NNLTVGLDGLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~-t~--~-k~--~~~~~g~~~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~ 485 (514)
++.+.+.|+|.+.+++=.. .+ + +. ..++..|+.+.++++.+ ++||++-|||. .+++.+.+. |++ ||.+
T Consensus 147 ~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~d---gVMi 222 (318)
T TIGR00742 147 VEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVD---GVMV 222 (318)
T ss_pred HHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCC---EEEE
Confidence 5667789999998765332 00 0 11 12335788888998877 89999999996 788888886 899 9999
Q ss_pred eecccCCC
Q 010244 486 VSALFDRE 493 (514)
Q Consensus 486 ~~~i~~~~ 493 (514)
+++++..+
T Consensus 223 gRgal~nP 230 (318)
T TIGR00742 223 GREAYENP 230 (318)
T ss_pred CHHHHhCC
Confidence 99998643
No 348
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=95.49 E-value=0.59 Score=42.30 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=97.6
Q ss_pred CHHHHHHHHHhCCCCEEEEEcC-----CCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHH
Q 010244 319 SITDAVKAALEGGATIIQLREK-----DADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPART 393 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~ 393 (514)
+-.++++++.+.|++.+.+-+- ..+..+..+....+.+...+.|++ -+.+ ++.... -++...++...+...+
T Consensus 37 dP~eia~~lr~rgar~vYiADLdaI~g~g~n~d~i~~l~~~~~~ivD~Gv~-dL~s-~~~~l~-~~~~~vv~TEt~e~~e 113 (229)
T COG1411 37 DPLEIAEALRERGARFVYIADLDAILGGGDNADTIRELSSLEKVIVDVGVR-DLES-HAHRLI-PAETAVVGTETLEDTE 113 (229)
T ss_pred ChHHHHHHHhhccCceEEeeehHHHhcCCCcHHHHHHHHhhhhheeecccc-cccC-HHHhcC-CCcceeeccchhhhhh
Confidence 4567888888999999988542 112333333333333333334443 1111 222211 1223344444444333
Q ss_pred HHhh--------cCCCcEEEEecCCHHHHHHhhhCC--CcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECC
Q 010244 394 ARAL--------LGPDKIIGVSCKTPEEAHQAWIDG--ANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGG 463 (514)
Q Consensus 394 ~~~~--------~~~~~~ig~s~~~~~e~~~a~~~g--~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GG 463 (514)
..+. +....+.+.+..+..|..+-...+ .+.|++ ++-...|+.+ ...+.++.+...+.-||+.-||
T Consensus 114 ~~e~~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvL-Di~aVGt~~G---~~~E~l~~~~~~s~~pVllGGG 189 (229)
T COG1411 114 EDEEGRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVL-DIGAVGTKSG---PDYELLTKVLELSEHPVLLGGG 189 (229)
T ss_pred hhhccceEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEE-EccccccccC---CCHHHHHHHHHhccCceeecCC
Confidence 3332 122333344444555544444343 444544 3333333333 4578888888888999999999
Q ss_pred CC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHH
Q 010244 464 IG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPES 499 (514)
Q Consensus 464 i~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~ 499 (514)
|. .|++..+...|++ |+-+++++..-..|.+..
T Consensus 190 V~g~Edlel~~~~Gv~---gvLvaTalh~G~vple~~ 223 (229)
T COG1411 190 VGGMEDLELLLGMGVS---GVLVATALHEGVVPLEVE 223 (229)
T ss_pred cCcHHHHHHHhcCCCc---eeeehhhhhcCcCcHHHH
Confidence 98 6888888889999 999999999777776554
No 349
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=95.48 E-value=0.096 Score=53.93 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCHHHHHHhhhCC-CcEEEeccccCCC-CCCC-C-ccCC---HHHHHHHHHcC-------CCCEEEECCCC-cccHHHHH
Q 010244 409 KTPEEAHQAWIDG-ANYIGCGGVYPTN-TKAN-N-LTVG---LDGLKTVCLAS-------KLPVVAIGGIG-ISNASDVM 473 (514)
Q Consensus 409 ~~~~e~~~a~~~g-~d~v~~~~vf~t~-~k~~-~-~~~g---~~~l~~~~~~~-------~~pv~a~GGi~-~~~~~~~~ 473 (514)
++++++..+.+.+ +|+|.++.-.... ..+. . ...| ...+.++.+.+ ++||++.|||. ..++..++
T Consensus 225 ~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal 304 (392)
T cd02808 225 HGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKAL 304 (392)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH
Confidence 3778888777776 9999986654321 1110 0 0111 23344443322 69999999995 88999999
Q ss_pred HCCCCCCceEEEeecccC
Q 010244 474 KIGVSNLKGVAVVSALFD 491 (514)
Q Consensus 474 ~~Ga~~~~gva~~~~i~~ 491 (514)
.+||+ +|.+++.++.
T Consensus 305 aLGAd---~V~ig~~~l~ 319 (392)
T cd02808 305 ALGAD---AVGIGTAALI 319 (392)
T ss_pred HcCCC---eeeechHHHH
Confidence 99999 9999999883
No 350
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.45 E-value=0.71 Score=46.21 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=100.9
Q ss_pred HHHHHHHHhCCCCEEEEEcCCC-------CHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCC----
Q 010244 321 TDAVKAALEGGATIIQLREKDA-------DTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDM---- 389 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~---- 389 (514)
.+.+.++++.|.+.|.+--..+ +.++-.+..+++.++|+.+|+.+-- ++| |++....
T Consensus 88 ~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEa--------ELG----~vgg~e~~~~g 155 (347)
T PRK09196 88 PATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEG--------ELG----CLGSLETGMGG 155 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE--------EEe----eccCccccccc
Confidence 3468889999999999977776 7778888889999999999886632 111 1211100
Q ss_pred --CHHHHHhhcCCCcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCC---CCCCccCCHHHHHHHHHcC-CCCEEE
Q 010244 390 --PARTARALLGPDKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNT---KANNLTVGLDGLKTVCLAS-KLPVVA 460 (514)
Q Consensus 390 --~~~~~~~~~~~~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~---k~~~~~~g~~~l~~~~~~~-~~pv~a 460 (514)
.-.......... .--.+|+|+.+-. +.|+|.+.+ |.+.-... +|..+.+.+++++++++.+ ++|++.
T Consensus 156 ~~~~~~~~~~~~~~----~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVL 231 (347)
T PRK09196 156 EEDGHGAEGKLSHD----QLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVM 231 (347)
T ss_pred cccCcccccccchh----hcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEE
Confidence 000000000001 1134799987755 679999765 33332211 2333458999999999998 799999
Q ss_pred ECCC-----------------------CcccHHHHHHCCCCCCceEEEeeccc
Q 010244 461 IGGI-----------------------GISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 461 ~GGi-----------------------~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
=||- ..+++.++.+.|.. -|=+.+.+.
T Consensus 232 HGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~---KINi~Tdl~ 281 (347)
T PRK09196 232 HGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVR---KVNIDTDLR 281 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCc---eEEeChHHH
Confidence 9988 44889999999999 999988875
No 351
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=95.40 E-value=0.83 Score=45.21 Aligned_cols=145 Identities=13% Similarity=0.108 Sum_probs=101.8
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--..++.++-++.-+++.++|+.+|+.+-- ++| |++....... ..
T Consensus 98 ~e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEa--------ElG----~igg~ed~~~------~~ 159 (321)
T PRK07084 98 FELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEG--------ELG----VLAGVEDEVS------AE 159 (321)
T ss_pred HHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEE--------EEe----eecCccCCcc------Cc
Confidence 35688999999999999999999999999999999999999876531 111 2221110000 00
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCC-CCC--CccCCHHHHHHHHHcC-CCCEEEECCC---------
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNT-KAN--NLTVGLDGLKTVCLAS-KLPVVAIGGI--------- 464 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~-k~~--~~~~g~~~l~~~~~~~-~~pv~a~GGi--------- 464 (514)
. .--.+|+|+.+-. +-|+|.+.+ |.+.-... +|+ .+.+.++.|+++.+.+ ++|++.=||-
T Consensus 160 ~----~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~ 235 (321)
T PRK07084 160 H----HTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKT 235 (321)
T ss_pred c----cccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHH
Confidence 0 1134799988755 469999766 33332211 122 3558899999999988 7999888866
Q ss_pred --------------CcccHHHHHHCCCCCCceEEEeeccc
Q 010244 465 --------------GISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 465 --------------~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
..+++.++.+.|.. -|=+.+.+.
T Consensus 236 ~~~~g~~~~~~~Gi~~e~~~kai~~GI~---KINi~Tdl~ 272 (321)
T PRK07084 236 INEYGGKLKDAIGIPEEQLRKAAKSAVC---KINIDSDGR 272 (321)
T ss_pred HHHhcCccccCCCCCHHHHHHHHHcCCc---eeccchHHH
Confidence 35889999999999 888887774
No 352
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=95.40 E-value=0.17 Score=47.26 Aligned_cols=163 Identities=14% Similarity=0.078 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHhC--CCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHH
Q 010244 318 RSITDAVKAALEG--GATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTAR 395 (514)
Q Consensus 318 ~~~~~~~~~~~~~--Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~ 395 (514)
.+..+.+..+++- |--.+|+ -..+.++..+.++++..+..+ +.+=|.-..+ -...++
T Consensus 37 ~~~~~~~~~i~~~~~g~vs~qv--~~~~~~~mi~~a~~l~~~~~~--i~iKIP~T~~-----------------Gl~A~~ 95 (213)
T TIGR00875 37 RSFWEVLKEIQEAVEGPVSAET--ISLDAEGMVEEAKELAKLAPN--IVVKIPMTSE-----------------GLKAVK 95 (213)
T ss_pred CCHHHHHHHHHHhcCCcEEEEE--eeCCHHHHHHHHHHHHHhCCC--eEEEeCCCHH-----------------HHHHHH
Confidence 3344455444433 3234455 455677888888887766532 2221222111 011122
Q ss_pred hhcCCCc-EEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc-----CCCCEEEECCCCcccH
Q 010244 396 ALLGPDK-IIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA-----SKLPVVAIGGIGISNA 469 (514)
Q Consensus 396 ~~~~~~~-~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~-----~~~pv~a~GGi~~~~~ 469 (514)
.....+. .....+.|.+++..|.+.|+||| ..|-..-.. ...-|.+.++++.+. .+.+|++..=-+++++
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yi---spyvgRi~d-~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v 171 (213)
T TIGR00875 96 ILKKEGIKTNVTLVFSAAQALLAAKAGATYV---SPFVGRLDD-IGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHV 171 (213)
T ss_pred HHHHCCCceeEEEecCHHHHHHHHHcCCCEE---EeecchHHH-cCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHH
Confidence 2211222 33445789999999999999999 444322111 111356666666544 3678888887788888
Q ss_pred HHHHHCCCCCCceEEEeeccc----CCCCHHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALF----DRECILPESKKLHAVLMD 508 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~----~~~~~~~~~~~~~~~~~~ 508 (514)
.++..+|++ .+-+.-.++ ..+-....++.|.+.|.+
T Consensus 172 ~~~~~~G~d---~vTip~~vl~~l~~~p~t~~~~~~F~~d~~~ 211 (213)
T TIGR00875 172 LEAALIGAD---IATMPLDVMQQLFNHPLTDIGLERFLKDWNA 211 (213)
T ss_pred HHHHHcCCC---EEEcCHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 888899999 888876665 344557777888877764
No 353
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.37 E-value=2.7 Score=42.71 Aligned_cols=166 Identities=20% Similarity=0.250 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEEc--CCCCHHHH----HHHHHHHHHHHhhcCceEEEc----CcHHHHHhCCCCeEEeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLRE--KDADTRGF----LEAAKACLQICCVHGVPLLIN----DRIDIALACDADGVHLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~--~~~~~~~~----~~~~~~~~~~~~~~~~~l~v~----~~~~~a~~~ga~gvhl~~~ 387 (514)
+.+.+....+-+.|+.++.=.. +..++..+ .+..+.+.+.|+++|++++.. .+++.+.++ +|.+.+++.
T Consensus 132 ~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~ 210 (360)
T PRK12595 132 EQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGAR 210 (360)
T ss_pred HHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcc
Confidence 4566666666677776553211 11111011 244556788899999988752 367788888 999999987
Q ss_pred CCC-HHHHHhhcCCCcEEEEec---CCHHHHHHhh----hCCC-cEEEec---cccCCCCCCCCccCCHHHHHHHHHcCC
Q 010244 388 DMP-ARTARALLGPDKIIGVSC---KTPEEAHQAW----IDGA-NYIGCG---GVYPTNTKANNLTVGLDGLKTVCLASK 455 (514)
Q Consensus 388 ~~~-~~~~~~~~~~~~~ig~s~---~~~~e~~~a~----~~g~-d~v~~~---~vf~t~~k~~~~~~g~~~l~~~~~~~~ 455 (514)
+.. ...++..-+.++.+.++. .|++|+..|. +.|- +++++- ..||+ +....+.+..+..+++.++
T Consensus 211 ~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~---~~~~~ldl~~i~~lk~~~~ 287 (360)
T PRK12595 211 NMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEK---ATRNTLDISAVPILKQETH 287 (360)
T ss_pred cccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCC---CCCCCcCHHHHHHHHHHhC
Confidence 653 223333333444554444 3899877665 4566 455442 13332 2234468899999998889
Q ss_pred CCEEE-ECCCC------cccHHHHHHCCCCCCceEEEeeccc
Q 010244 456 LPVVA-IGGIG------ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 456 ~pv~a-~GGi~------~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+||.. ..... +.-......+||+ |+.+-.-+-
T Consensus 288 ~PV~~d~~Hs~G~r~~~~~~a~aAva~GAd---g~~iE~H~d 326 (360)
T PRK12595 288 LPVMVDVTHSTGRRDLLLPTAKAALAIGAD---GVMAEVHPD 326 (360)
T ss_pred CCEEEeCCCCCcchhhHHHHHHHHHHcCCC---eEEEEecCC
Confidence 99888 33322 2223456789999 998887773
No 354
>PLN02826 dihydroorotate dehydrogenase
Probab=95.36 E-value=0.072 Score=54.84 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=46.7
Q ss_pred CHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHH
Q 010244 443 GLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 443 g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
.++.++++.+.. ++||++.|||. .+++-+.+.+||+ .|.++++++.. .| ..++++++.+.+
T Consensus 327 sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs---~VQv~Ta~~~~-Gp-~~i~~I~~eL~~ 390 (409)
T PLN02826 327 STEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGAS---LVQLYTAFAYE-GP-ALIPRIKAELAA 390 (409)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCC---eeeecHHHHhc-CH-HHHHHHHHHHHH
Confidence 466777777766 79999999996 7899999999999 99999998853 23 344445554444
No 355
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=95.34 E-value=0.074 Score=50.60 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=59.8
Q ss_pred CHHHHHHhh-hCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEAHQAW-IDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~~~a~-~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
++.|+.+.+ +.|+|.+.+-.+-...+ .....++.++++++..++||++-|||. .+++..+++.|++ +|.+++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~---~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~---~vilg~ 104 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKR---GREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGAD---KVSINT 104 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCccc---CCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCC---EEEECh
Confidence 677755544 77999996644433211 234568889999988899999999997 7889999999999 999999
Q ss_pred cccCC
Q 010244 488 ALFDR 492 (514)
Q Consensus 488 ~i~~~ 492 (514)
.++..
T Consensus 105 ~~l~~ 109 (232)
T TIGR03572 105 AALEN 109 (232)
T ss_pred hHhcC
Confidence 98854
No 356
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.33 E-value=0.27 Score=49.34 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=74.4
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC-ceEEEcC-----cHHHHHhCCCCeEEeCCCCCC--
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG-VPLLIND-----RIDIALACDADGVHLGQSDMP-- 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~-~~l~v~~-----~~~~a~~~ga~gvhl~~~~~~-- 390 (514)
+..+.+++++++|++++.+...+...+...+.++.++ +.+. ++++.-+ -.+...++|||+|-++-..-.
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik---~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiC 184 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIK---KKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSIC 184 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHH---HHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTB
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHH---HhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccc
Confidence 4678899999999999999988888777777666554 4554 6666522 233456789999998754321
Q ss_pred ------------------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCC
Q 010244 391 ------------------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTN 434 (514)
Q Consensus 391 ------------------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~ 434 (514)
...+++.++...+---.+.+.-++.+|+..|||+|-+|..|...
T Consensus 185 tTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 185 TTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp HHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred ccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence 12233323222232234679999999999999999999999743
No 357
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.27 E-value=3.1 Score=40.34 Aligned_cols=183 Identities=15% Similarity=0.096 Sum_probs=113.1
Q ss_pred eEEEEeCCCCCccCCCCHHHHHHHHHhCCCCEEEEEcC--C---CCHHH-HHHHHHHHHHHHhhcCceEEE----cCcHH
Q 010244 303 FLYAVTDSGMNKKWGRSITDAVKAALEGGATIIQLREK--D---ADTRG-FLEAAKACLQICCVHGVPLLI----NDRID 372 (514)
Q Consensus 303 ~ly~it~~~~~~~~~~~~~~~~~~~~~~Gv~~v~lr~~--~---~~~~~-~~~~~~~~~~~~~~~~~~l~v----~~~~~ 372 (514)
++.+|..|.... ..+.+.+..+++-+.|+.++..-.- . .+.+. -.+..+.+++.|+++|++++. ..+++
T Consensus 27 ~~~~iaGPCsie-~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 27 EKIIIAGPCAVE-SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred CEEEEEeCCcCC-CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 456666543322 1356778888888899886655311 0 01111 234556678889999998865 34677
Q ss_pred HHHhCCCCeEEeCCCCCCHH-HHHhhcCCCcEEEEecC---CHHHHHHhh----hCCCcEEEeccc-cCCCCCCCCccCC
Q 010244 373 IALACDADGVHLGQSDMPAR-TARALLGPDKIIGVSCK---TPEEAHQAW----IDGANYIGCGGV-YPTNTKANNLTVG 443 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~~~~-~~~~~~~~~~~ig~s~~---~~~e~~~a~----~~g~d~v~~~~v-f~t~~k~~~~~~g 443 (514)
.+.++ ++.+-++..+.... .++..-+.++.++.+.. |++|+..|. +.|-.-+.+..- ++|.+.-....+.
T Consensus 106 ~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vd 184 (266)
T PRK13398 106 EVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLD 184 (266)
T ss_pred HHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHH
Confidence 77777 89999999876543 44444455667777665 788877665 345543333221 1111111123356
Q ss_pred HHHHHHHHHcCCCCEEE-ECCC-C-----cccHHHHHHCCCCCCceEEEeeccc
Q 010244 444 LDGLKTVCLASKLPVVA-IGGI-G-----ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 444 ~~~l~~~~~~~~~pv~a-~GGi-~-----~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+..+..+++.++.||+. ..-. . +.-......+||+ |+.+-.-+.
T Consensus 185 l~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~---Gl~iE~H~~ 235 (266)
T PRK13398 185 LAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGAD---GLMIEVHPE 235 (266)
T ss_pred HHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCC---EEEEeccCC
Confidence 67788888778999888 2322 2 3345677889999 999988776
No 358
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.24 E-value=0.024 Score=56.38 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=52.6
Q ss_pred HHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHC-CCCCCceEEEeecc
Q 010244 412 EEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKI-GVSNLKGVAVVSAL 489 (514)
Q Consensus 412 ~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~-Ga~~~~gva~~~~i 489 (514)
+-+....+.|++.+.+.+=-+.+.. ..+..|+.++++++.+++||++=|||. .+++.++++. |++ ||.+|++.
T Consensus 142 ~~~~~l~~~G~~~i~vH~Rt~~q~~--~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~d---gvMigRga 216 (309)
T PF01207_consen 142 EFARILEDAGVSAITVHGRTRKQRY--KGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGAD---GVMIGRGA 216 (309)
T ss_dssp HHHHHHHHTT--EEEEECS-TTCCC--TS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SS---EEEESHHH
T ss_pred HHHHHhhhcccceEEEecCchhhcC--CcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCc---EEEEchhh
Confidence 3366777899999977664322221 236789999999999999999999996 7889888886 999 99999999
Q ss_pred cCCC
Q 010244 490 FDRE 493 (514)
Q Consensus 490 ~~~~ 493 (514)
+.++
T Consensus 217 l~nP 220 (309)
T PF01207_consen 217 LGNP 220 (309)
T ss_dssp CC-C
T ss_pred hhcC
Confidence 7543
No 359
>PRK01362 putative translaldolase; Provisional
Probab=95.08 E-value=0.27 Score=45.89 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHhC--CCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHH
Q 010244 318 RSITDAVKAALEG--GATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTAR 395 (514)
Q Consensus 318 ~~~~~~~~~~~~~--Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~ 395 (514)
.+..+.+.++++- |--.+|+. ..+.++..+.++++..+..+ +-+=|.-..+ -...++
T Consensus 37 ~~~~~~~~~i~~~i~g~vs~qv~--~~d~~~m~~~a~~l~~~~~~--i~iKIP~T~~-----------------G~~a~~ 95 (214)
T PRK01362 37 RDFEEVIKEICSIVDGPVSAEVI--ALDAEGMIKEGRELAKIAPN--VVVKIPMTPE-----------------GLKAVK 95 (214)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEe--eCCHHHHHHHHHHHHHhCCC--EEEEeCCCHH-----------------HHHHHH
Confidence 3444555554443 33344554 56777888888877765532 2221222211 011122
Q ss_pred hhcCCCc-EEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCcccH
Q 010244 396 ALLGPDK-IIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGISNA 469 (514)
Q Consensus 396 ~~~~~~~-~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~~~~ 469 (514)
.....+. .....+.|+.++..|.+.|+||| ..|-..-.. ...-|.+.++++.+.+ +..|++..=-+++++
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yi---spyvgRi~d-~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v 171 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAGATYV---SPFVGRLDD-IGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHV 171 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcCCcEE---EeecchHhh-cCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHH
Confidence 2211222 33445789999999999999999 444332111 1123566666665443 566888777778888
Q ss_pred HHHHHCCCCCCceEEEeeccc----CCCCHHHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALF----DRECILPESKKLHAVLMDA 509 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~----~~~~~~~~~~~~~~~~~~~ 509 (514)
.++..+|++ .+-+.-.++ ..+-..+.++.|.+.|.+.
T Consensus 172 ~~~~~~G~d---~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~~~ 212 (214)
T PRK01362 172 LEAALAGAD---IATIPYKVIKQLFKHPLTDKGLEKFLADWEKA 212 (214)
T ss_pred HHHHHcCCC---EEecCHHHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 888999999 888876665 4555678888888887754
No 360
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.07 E-value=1.6 Score=42.88 Aligned_cols=129 Identities=17% Similarity=0.122 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCceEEEcC------------cHHHHHhCCCCeEEeCCCCCC-----------------HHHH---H
Q 010244 348 LEAAKACLQICCVHGVPLLIND------------RIDIALACDADGVHLGQSDMP-----------------ARTA---R 395 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~v~~------------~~~~a~~~ga~gvhl~~~~~~-----------------~~~~---~ 395 (514)
.+....+..++...+++|++.- .++...++|+.|+|+.....+ ..++ +
T Consensus 63 ~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~ 142 (294)
T TIGR02319 63 SEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAV 142 (294)
T ss_pred HHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHH
Confidence 3445555666667788988731 256667899999999654321 1111 1
Q ss_pred hh-cCCCcEEEEec-----CCHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCE---EEEC
Q 010244 396 AL-LGPDKIIGVSC-----KTPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPV---VAIG 462 (514)
Q Consensus 396 ~~-~~~~~~ig~s~-----~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv---~a~G 462 (514)
.. ...+..|-+-+ +..+| ++...+.|||.|++-. ....+.++++++.++.|+ +..|
T Consensus 143 ~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~-----------~~~~~ei~~~~~~~~~P~~~nv~~~ 211 (294)
T TIGR02319 143 EAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA-----------MLDVEEMKRVRDEIDAPLLANMVEG 211 (294)
T ss_pred HhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC-----------CCCHHHHHHHHHhcCCCeeEEEEec
Confidence 11 12344554433 34555 3445589999996621 124678888888888887 4556
Q ss_pred CCCc-ccHHHHHHCCCCCCceEEEeeccc
Q 010244 463 GIGI-SNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 463 Gi~~-~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
|-++ -++.++.++|+. -|..+...+
T Consensus 212 ~~~p~~s~~eL~~lG~~---~v~~~~~~~ 237 (294)
T TIGR02319 212 GKTPWLTTKELESIGYN---LAIYPLSGW 237 (294)
T ss_pred CCCCCCCHHHHHHcCCc---EEEEcHHHH
Confidence 6554 579999999999 998887766
No 361
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.98 E-value=1.8 Score=42.41 Aligned_cols=129 Identities=20% Similarity=0.190 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhcCceEEEcC------------cHHHHHhCCCCeEEeCCCCC-------------CHH----H---HH
Q 010244 348 LEAAKACLQICCVHGVPLLIND------------RIDIALACDADGVHLGQSDM-------------PAR----T---AR 395 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~v~~------------~~~~a~~~ga~gvhl~~~~~-------------~~~----~---~~ 395 (514)
.+....+..++...+++|++.- .++...++|+.|+|+..... +.. . ++
T Consensus 59 ~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~ 138 (285)
T TIGR02317 59 DEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAV 138 (285)
T ss_pred HHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHH
Confidence 3444455566666788988731 25567789999999965421 111 1 11
Q ss_pred hh-cCCCcEEEEecC-----CHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEE---EEC
Q 010244 396 AL-LGPDKIIGVSCK-----TPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVV---AIG 462 (514)
Q Consensus 396 ~~-~~~~~~ig~s~~-----~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~---a~G 462 (514)
.. ...+..|.+-+. ..+| ++...+.|||.|++-. ....+.++++.+.++.|++ ..|
T Consensus 139 ~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g-----------~~~~e~i~~~~~~i~~Pl~~n~~~~ 207 (285)
T TIGR02317 139 DAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEA-----------LTSLEEFRQFAKAVKVPLLANMTEF 207 (285)
T ss_pred HhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCC-----------CCCHHHHHHHHHhcCCCEEEEeccC
Confidence 11 233455554443 2445 3455688999996621 1247778888888888883 335
Q ss_pred CCCc-ccHHHHHHCCCCCCceEEEeeccc
Q 010244 463 GIGI-SNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 463 Gi~~-~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
|-++ -++.++.++|+. -|..+...+
T Consensus 208 ~~~p~~s~~eL~~lGv~---~v~~~~~~~ 233 (285)
T TIGR02317 208 GKTPLFTADELREAGYK---MVIYPVTAF 233 (285)
T ss_pred CCCCCCCHHHHHHcCCc---EEEEchHHH
Confidence 6555 479999999999 998887776
No 362
>PRK14565 triosephosphate isomerase; Provisional
Probab=94.95 E-value=0.29 Score=46.34 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=78.8
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------H----HHHHhhcCCCcEEEEecCCHHHHHHhhhC---------------CCcE
Q 010244 370 RIDIALACDADGVHLGQSDMP------A----RTARALLGPDKIIGVSCKTPEEAHQAWID---------------GANY 424 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~----~~~~~~~~~~~~ig~s~~~~~e~~~a~~~---------------g~d~ 424 (514)
.++...++|++++-++..... . .++++.+..++.+-+.+....|.+.+... .-.+
T Consensus 77 S~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~iv 156 (237)
T PRK14565 77 SAKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGEFI 156 (237)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCCEE
Confidence 466777888888866654321 1 12344555677666666543333332221 2256
Q ss_pred EEeccccCCCCCCCCccCCHHHHHHHH----HcC-CCCEEEECCCCcccHHHHHHC-CCCCCceEEEeecccCCCCHHHH
Q 010244 425 IGCGGVYPTNTKANNLTVGLDGLKTVC----LAS-KLPVVAIGGIGISNASDVMKI-GVSNLKGVAVVSALFDRECILPE 498 (514)
Q Consensus 425 v~~~~vf~t~~k~~~~~~g~~~l~~~~----~~~-~~pv~a~GGi~~~~~~~~~~~-Ga~~~~gva~~~~i~~~~~~~~~ 498 (514)
|..=|++.-.|...+ ..+.++++. +.. +++|+--|+++++|+.++++. +.| |+-+|++.++.+++.+.
T Consensus 157 IAYEPvWAIGtG~~a---~~e~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iD---G~LvG~asl~~~~f~~i 230 (237)
T PRK14565 157 IAYEPVWAIGGSTIP---SNDAIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLS---GVLVGSASLDVDSFCKI 230 (237)
T ss_pred EEECCHHHhCCCCCC---CHHHHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCC---EEEEechhhcHHHHHHH
Confidence 666677775543322 344444333 222 589999999999999999984 566 99999999977777666
Q ss_pred HHH
Q 010244 499 SKK 501 (514)
Q Consensus 499 ~~~ 501 (514)
++.
T Consensus 231 i~~ 233 (237)
T PRK14565 231 IQQ 233 (237)
T ss_pred HHH
Confidence 554
No 363
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=94.91 E-value=1.7 Score=42.09 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=101.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.+.+--...+-++-.+..+++.+.|+.+|+.|-.. +| .--+..+...... .
T Consensus 88 ~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaE--------lG---~~GG~Edg~~~~~-----~ 151 (286)
T COG0191 88 FEDCKQAIRAGFSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAE--------LG---TLGGEEDGVVLYT-----D 151 (286)
T ss_pred HHHHHHHHhcCCceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEE--------ec---cccCccCCccccc-----c
Confidence 467888999999999998888888888899999999999999877542 11 1111222100000 0
Q ss_pred CcEEEEecCCHHHHHHhhhC-CCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC--CcccHHHHHHC
Q 010244 401 DKIIGVSCKTPEEAHQAWID-GANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI--GISNASDVMKI 475 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~~~-g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi--~~~~~~~~~~~ 475 (514)
+.. ..+++|+..-.+. |.|.+.+ |.+.- ..|++.+.+.++.|+++.+...+|++.=||- ..+.+.+.++.
T Consensus 152 ~~~----~tdp~ea~~fv~~tgiD~LA~aiGn~HG-~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~ 226 (286)
T COG0191 152 PAD----LTDPEEALEFVERTGIDALAAAIGNVHG-VYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKL 226 (286)
T ss_pred hhh----hCCHHHHHHHHhccCcceeeeecccccc-CCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHh
Confidence 001 3478888877766 4998765 33321 1233445588999999999989999988875 47889999999
Q ss_pred CCCCCceEEEeecc
Q 010244 476 GVSNLKGVAVVSAL 489 (514)
Q Consensus 476 Ga~~~~gva~~~~i 489 (514)
|.. -|=+-+.+
T Consensus 227 GV~---KvNi~Td~ 237 (286)
T COG0191 227 GVA---KVNIDTDL 237 (286)
T ss_pred Cce---EEeeCcHH
Confidence 998 88776654
No 364
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=94.90 E-value=1.9 Score=47.23 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=94.9
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHH-HHH-HHHHHHHHhhc---CceEEEcCcHH----HHHhCCCCeEEeCCCCCC--
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGF-LEA-AKACLQICCVH---GVPLLINDRID----IALACDADGVHLGQSDMP-- 390 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~-~~~-~~~~~~~~~~~---~~~l~v~~~~~----~a~~~ga~gvhl~~~~~~-- 390 (514)
+-++.+.+.|++++=+=....+++.. .+. ++.+.+..... .+-++++++++ ++.+.+.|.|+|......
T Consensus 14 eda~~a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e~~~~ 93 (610)
T PRK13803 14 ALISKAVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAESKAE 93 (610)
T ss_pred HHHHHHHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCccc
Confidence 45677888998877663222222211 122 33343322221 24667787765 345778999988654321
Q ss_pred HHHHHhhcCCCcEEE--EecCCHHHHHHh--hhCCCcEEEeccccCCCCCCC-CccCCHHHHHHHHHcCCCCEEEECCCC
Q 010244 391 ARTARALLGPDKIIG--VSCKTPEEAHQA--WIDGANYIGCGGVYPTNTKAN-NLTVGLDGLKTVCLASKLPVVAIGGIG 465 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig--~s~~~~~e~~~a--~~~g~d~v~~~~vf~t~~k~~-~~~~g~~~l~~~~~~~~~pv~a~GGi~ 465 (514)
...++........+. ....+..++..+ ++.-+||+++-.--+ ...+ .....|+.++.+. ...|++..|||+
T Consensus 94 ~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~--~~GGtG~~fdw~~~~~~~--~~~p~iLAGGL~ 169 (610)
T PRK13803 94 PAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTK--IYGGSGKSFDWEKFYNYN--FKFPFFLSGGLS 169 (610)
T ss_pred HHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCC--CCCCCCCccChHHhhhcc--cCCcEEEEeCCC
Confidence 344444332222122 223333222222 223489887743111 1111 2335677765442 257999999999
Q ss_pred cccHHHHHHCCCCCCceEEEeecccCC---CCHHHHHHHHHHHHHH
Q 010244 466 ISNASDVMKIGVSNLKGVAVVSALFDR---ECILPESKKLHAVLMD 508 (514)
Q Consensus 466 ~~~~~~~~~~Ga~~~~gva~~~~i~~~---~~~~~~~~~~~~~~~~ 508 (514)
++|+.++++..--.+-||=+.|.+-.. .|+.+ +++|.+.+++
T Consensus 170 peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~k-i~~fi~~~k~ 214 (610)
T PRK13803 170 PTNFDRIINLTHPQILGIDVSSGFEDSPGNKKLTL-LKSFITNVKK 214 (610)
T ss_pred HHHHHHHHhhhCCCceEEEccCcccCCCCCcCHHH-HHHHHHHHHH
Confidence 999999998521101167778888743 45533 3444444443
No 365
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=94.87 E-value=0.34 Score=45.49 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHh----CCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHH
Q 010244 318 RSITDAVKAALE----GGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPART 393 (514)
Q Consensus 318 ~~~~~~~~~~~~----~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~ 393 (514)
.+..+.+.++++ .|.-.+|+- ..+.++..+.++++..+... +-+=|.-..+- ...
T Consensus 37 ~~~~~~~~~i~~~~~~~~~v~~qv~--~~d~e~mi~eA~~l~~~~~n--v~IKIP~T~~G-----------------l~A 95 (220)
T PRK12655 37 ESIWEVLPRLQKAIGGEGILFAQTM--SRDAQGMVEEAKRLRNAIPG--IVVKIPVTAEG-----------------LAA 95 (220)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEEe--eCCHHHHHHHHHHHHHhCCC--EEEEeCCCHHH-----------------HHH
Confidence 334445555444 344455663 45678888888887766532 22222222110 111
Q ss_pred HHhhcCCC-cEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCcc
Q 010244 394 ARALLGPD-KIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGIS 467 (514)
Q Consensus 394 ~~~~~~~~-~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~~ 467 (514)
++.....+ ......|.|+.++..|...|++|| ..|-..-.. ...-|.+.++++.+.+ +..|++..=-+++
T Consensus 96 i~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yI---spyvgR~~~-~g~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~ 171 (220)
T PRK12655 96 IKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYV---APYVNRVDA-QGGDGIRMVQELQTLLEMHAPESMVLAASFKTPR 171 (220)
T ss_pred HHHHHHCCCceeEeEecCHHHHHHHHHcCCeEE---EeecchHhH-cCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCHH
Confidence 11111112 233455789999999999999998 334322111 1112455555554432 5668887766788
Q ss_pred cHHHHHHCCCCCCceEEEeeccc----CCCCHHHHHHHHHHHHHHHh
Q 010244 468 NASDVMKIGVSNLKGVAVVSALF----DRECILPESKKLHAVLMDAV 510 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~~~i~----~~~~~~~~~~~~~~~~~~~~ 510 (514)
.+.++..+|++ .+-+.-.++ +.+-..+.++.|.+.|++..
T Consensus 172 ~v~~~~~~G~d---~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~~~ 215 (220)
T PRK12655 172 QALDCLLAGCQ---SITLPLDVAQQMLNTPAVESAIEKFEQDWQAAF 215 (220)
T ss_pred HHHHHHHcCCC---EEECCHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 88888899999 888766655 55667888999999888754
No 366
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.87 E-value=0.11 Score=50.37 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=58.9
Q ss_pred CHHHH-HHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEA-HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~-~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|.++ +.-.+.|+|.+.+ .+-..-.......++.++++++...+||.+-|||. .+++.++++.|++ ++.+++
T Consensus 31 dp~~~a~~~~~~g~~~l~i---~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~---~vvigs 104 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIV---LDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVE---KVSINT 104 (258)
T ss_pred CHHHHHHHHHHcCCCEEEE---EECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCC---EEEECh
Confidence 67765 4555889999944 43222211233568899999988899999999995 8999999999999 999999
Q ss_pred cccCC
Q 010244 488 ALFDR 492 (514)
Q Consensus 488 ~i~~~ 492 (514)
+++..
T Consensus 105 ~~~~~ 109 (258)
T PRK01033 105 AALED 109 (258)
T ss_pred HHhcC
Confidence 88854
No 367
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.82 E-value=2.3 Score=41.77 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhcCceEEEcC------------cHHHHHhCCCCeEEeCCCCC-------------CH----HHHH---h
Q 010244 349 EAAKACLQICCVHGVPLLIND------------RIDIALACDADGVHLGQSDM-------------PA----RTAR---A 396 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~v~~------------~~~~a~~~ga~gvhl~~~~~-------------~~----~~~~---~ 396 (514)
+....++.++...++||++.- .++...++|+-|+|+..... +. .+++ .
T Consensus 65 e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~ 144 (292)
T PRK11320 65 DVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVD 144 (292)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHH
Confidence 334444455666678888732 25667789999999965321 11 1111 1
Q ss_pred h-cCCCcEEEEecC-----CHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEE---ECC
Q 010244 397 L-LGPDKIIGVSCK-----TPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVA---IGG 463 (514)
Q Consensus 397 ~-~~~~~~ig~s~~-----~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a---~GG 463 (514)
. .+.+..|.+-+. ..+| ++...+.|||.|++-. ....+.++++++.++.|+++ .+|
T Consensus 145 a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-----------~~~~~~i~~~~~~~~~Pl~~n~~~~~ 213 (292)
T PRK11320 145 ARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-----------MTELEMYRRFADAVKVPILANITEFG 213 (292)
T ss_pred hccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC-----------CCCHHHHHHHHHhcCCCEEEEeccCC
Confidence 1 134555554433 3555 3455689999996621 12488889999888889833 355
Q ss_pred CCc-ccHHHHHHCCCCCCceEEEeeccc
Q 010244 464 IGI-SNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 464 i~~-~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
-++ -++.++.++|+. -|..+...+
T Consensus 214 ~~p~~s~~~L~~lGv~---~v~~~~~~~ 238 (292)
T PRK11320 214 ATPLFTTEELASAGVA---MVLYPLSAF 238 (292)
T ss_pred CCCCCCHHHHHHcCCc---EEEEChHHH
Confidence 444 478999999999 988887665
No 368
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=94.78 E-value=0.12 Score=49.07 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=57.7
Q ss_pred CHHHHH-HhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEAH-QAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~~-~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|.++. ...+.|+|.+.+ ..-+.........++.++++++..++|+..-|||. .+++..++++||+ .|.+++
T Consensus 29 dp~~~a~~~~~~g~~~l~v---~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~---~vvlgs 102 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHV---VDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVD---RVIIGT 102 (230)
T ss_pred CHHHHHHHHHHcCCCEEEE---EeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCC---EEEECh
Confidence 666644 445788999844 43222211222467889999988899999999997 7999999999999 999998
Q ss_pred cccCC
Q 010244 488 ALFDR 492 (514)
Q Consensus 488 ~i~~~ 492 (514)
..+..
T Consensus 103 ~~l~d 107 (230)
T TIGR00007 103 AAVEN 107 (230)
T ss_pred HHhhC
Confidence 88853
No 369
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.76 E-value=1.8 Score=42.49 Aligned_cols=145 Identities=19% Similarity=0.286 Sum_probs=101.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--...+.++-.+.-+++.++++.+|+.+--. +| |++......... .
T Consensus 90 ~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaE--------lG----~vgg~e~~~~~~-----~ 152 (288)
T TIGR00167 90 EEDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAE--------LG----TLGGEEDGVSVA-----D 152 (288)
T ss_pred HHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------Ee----eccCccCCcccc-----c
Confidence 367888999999999998888999988999999999999988866331 11 121111000000 0
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCcc-CCHHHHHHHHHcCCCCEEEECCCC--cccHHHHHH
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLT-VGLDGLKTVCLASKLPVVAIGGIG--ISNASDVMK 474 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~-~g~~~l~~~~~~~~~pv~a~GGi~--~~~~~~~~~ 474 (514)
.. .--.+|+|+.+=. +-|+|.+.+ |.+.-.. |. .+. +.++.|+++.+.+++|++.=||-. .+++.++.+
T Consensus 153 ~~---~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-~~-~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~ 227 (288)
T TIGR00167 153 ES---ALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVY-KG-EPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAIS 227 (288)
T ss_pred cc---ccCCCHHHHHHHHhccCCcEEeeccCcccccc-CC-CCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH
Confidence 00 0134788887755 469999866 3333211 11 233 789999999999999999999875 578999999
Q ss_pred CCCCCCceEEEeeccc
Q 010244 475 IGVSNLKGVAVVSALF 490 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i~ 490 (514)
.|+. -|=+.+.+.
T Consensus 228 ~Gi~---KiNi~T~l~ 240 (288)
T TIGR00167 228 LGVV---KVNIDTELQ 240 (288)
T ss_pred cCCe---EEEcChHHH
Confidence 9999 998888874
No 370
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.71 E-value=0.66 Score=42.59 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=52.3
Q ss_pred HHHhhcCCCcEEEE-ecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHH
Q 010244 393 TARALLGPDKIIGV-SCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASD 471 (514)
Q Consensus 393 ~~~~~~~~~~~ig~-s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~ 471 (514)
.+++.++ +..+|. +++|.+++..+.+.|+|++..+. ...+.++ .++..+.|+++ |--|++++.+
T Consensus 48 ~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~------------~~~~~~~-~~~~~~~~~i~-gv~t~~e~~~ 112 (190)
T cd00452 48 ALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIVSPG------------LDPEVVK-AANRAGIPLLP-GVATPTEIMQ 112 (190)
T ss_pred HHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEEcCC------------CCHHHHH-HHHHcCCcEEC-CcCCHHHHHH
Confidence 3444443 566675 66789999999999999994321 1233333 34445777765 6668899999
Q ss_pred HHHCCCCCCceEEE
Q 010244 472 VMKIGVSNLKGVAV 485 (514)
Q Consensus 472 ~~~~Ga~~~~gva~ 485 (514)
+.++|++ .+.+
T Consensus 113 A~~~Gad---~i~~ 123 (190)
T cd00452 113 ALELGAD---IVKL 123 (190)
T ss_pred HHHCCCC---EEEE
Confidence 9999999 8875
No 371
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.68 E-value=0.63 Score=45.62 Aligned_cols=146 Identities=19% Similarity=0.310 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCC-C-CCHHHHHhhc
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQS-D-MPARTARALL 398 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~-~-~~~~~~~~~~ 398 (514)
.+.+.++++.|.+.|.+--...+.++-.+.-+++.++|+.+|+.+--. +| |++.. + .......
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaE--------lG----~i~g~ed~~~~~~~~--- 150 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAE--------LG----HIGGKEDGIESEEET--- 150 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEE--------ES----BSSSSCTTCSSSTT----
T ss_pred HHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEE--------ee----eeeccCCCccccccc---
Confidence 567889999999999999999999998999999999999998766431 11 12211 1 0000000
Q ss_pred CCCcEEEEecCCHHHHHHh-hhCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcC-CCCEEEECCCC--cccHHHH
Q 010244 399 GPDKIIGVSCKTPEEAHQA-WIDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLAS-KLPVVAIGGIG--ISNASDV 472 (514)
Q Consensus 399 ~~~~~ig~s~~~~~e~~~a-~~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~--~~~~~~~ 472 (514)
... -.+|+++.+- .+-|+|.+.+ |.+.-.......+.+.++.|+++++.+ ++|++.=||-. .+++.++
T Consensus 151 --~~~----~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 151 --ESL----YTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp --TTC----SSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHH
T ss_pred --ccc----ccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHH
Confidence 000 2378887765 4789999866 322221111123447899999999999 99999999875 6789999
Q ss_pred HHCCCCCCceEEEeeccc
Q 010244 473 MKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~ 490 (514)
.+.|.. -|=+++.+.
T Consensus 225 i~~Gi~---KiNi~T~~~ 239 (287)
T PF01116_consen 225 IKNGIS---KINIGTELR 239 (287)
T ss_dssp HHTTEE---EEEESHHHH
T ss_pred HHcCce---EEEEehHHH
Confidence 999999 999988876
No 372
>PLN02411 12-oxophytodienoate reductase
Probab=94.64 E-value=0.13 Score=53.01 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=53.6
Q ss_pred CCcEEEeccccCCC---CCCC-CccCC--HHHHHHHHHcCCCCEEEECCCCcccHHHHHHCC-CCCCceEEEeecccCCC
Q 010244 421 GANYIGCGGVYPTN---TKAN-NLTVG--LDGLKTVCLASKLPVVAIGGIGISNASDVMKIG-VSNLKGVAVVSALFDRE 493 (514)
Q Consensus 421 g~d~v~~~~vf~t~---~k~~-~~~~g--~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~G-a~~~~gva~~~~i~~~~ 493 (514)
|+||+-++.-.... ..+. ....+ ....+.+++..++||++.|||+++.+.++++.| +| .|++++.+...+
T Consensus 273 ~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aD---lV~~gR~~iadP 349 (391)
T PLN02411 273 KLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDAD---LVSYGRLFISNP 349 (391)
T ss_pred CeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCC---EEEECHHHHhCc
Confidence 58999886432211 1111 11112 234577787789999999999999999999998 78 999999999877
Q ss_pred CHHHHH
Q 010244 494 CILPES 499 (514)
Q Consensus 494 ~~~~~~ 499 (514)
|....+
T Consensus 350 dl~~k~ 355 (391)
T PLN02411 350 DLVLRF 355 (391)
T ss_pred cHHHHH
Confidence 765544
No 373
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.64 E-value=0.48 Score=48.53 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=74.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----CcHHHHHhCCCCeEEeCCCC-----
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----DRIDIALACDADGVHLGQSD----- 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~~~~~a~~~ga~gvhl~~~~----- 388 (514)
+..+.+++++++|+++|.+-..+.+.....+.++++++... +..++.. +....+.++|+|+|-.+...
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p--~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~ 230 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP--NLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICT 230 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC--CCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCc
Confidence 35678999999999999987766666666676666665332 3455442 23456678899998655311
Q ss_pred ---------CCHH---HHHhh---cCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCC
Q 010244 389 ---------MPAR---TARAL---LGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPT 433 (514)
Q Consensus 389 ---------~~~~---~~~~~---~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t 433 (514)
+... .+++. .+...+.--.++++.++.+|..+|||.|.+|..|..
T Consensus 231 tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~ag 290 (404)
T PRK06843 231 TRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_pred ceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeee
Confidence 1111 12222 222333334567999999999999999999988864
No 374
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.63 E-value=0.47 Score=44.41 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=55.9
Q ss_pred HHHhhcC--CCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccH
Q 010244 393 TARALLG--PDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNA 469 (514)
Q Consensus 393 ~~~~~~~--~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~ 469 (514)
.+++.++ ++.++|+.+ .|+++++.|.++|++|++ +|.+ ..+.++. +...++|+++ |-.|++.+
T Consensus 57 ~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv-sP~~-----------~~~v~~~-~~~~~i~~iP-G~~T~~E~ 122 (213)
T PRK06552 57 ELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV-SPSF-----------NRETAKI-CNLYQIPYLP-GCMTVTEI 122 (213)
T ss_pred HHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE-CCCC-----------CHHHHHH-HHHcCCCEEC-CcCCHHHH
Confidence 3444443 368899755 599999999999999994 4533 3444444 4455888877 66689999
Q ss_pred HHHHHCCCCCCceEEE
Q 010244 470 SDVMKIGVSNLKGVAV 485 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~ 485 (514)
...+++|++ .+.+
T Consensus 123 ~~A~~~Gad---~vkl 135 (213)
T PRK06552 123 VTALEAGSE---IVKL 135 (213)
T ss_pred HHHHHcCCC---EEEE
Confidence 999999999 7775
No 375
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=94.43 E-value=0.18 Score=53.52 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=75.6
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhc-CceEEEc-----CcHHHHHhCCCCeEEeCC--C---
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVH-GVPLLIN-----DRIDIALACDADGVHLGQ--S--- 387 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~-----~~~~~a~~~ga~gvhl~~--~--- 387 (514)
+..+.+++++++|+++|.+-..+......++.++++++ .+ +..++.- +....+.++|||+|-++. .
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~---~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~ 324 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK---TYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSIC 324 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH---hCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccc
Confidence 46789999999999999997776665555566666665 33 3555542 245667789999985531 0
Q ss_pred -----------CC-C---HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCC
Q 010244 388 -----------DM-P---ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPT 433 (514)
Q Consensus 388 -----------~~-~---~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t 433 (514)
.+ . ..++.+..+...+.--..++..++.+|+.+|||.|.+|..|..
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~ 385 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAG 385 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcc
Confidence 10 1 1122222233444444567999999999999999999998853
No 376
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.71 Score=43.88 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=85.4
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------H----HHHHhhcCCCcEEEEecCCHHH--------------HH-HhhhCCC--
Q 010244 370 RIDIALACDADGVHLGQSDMP------A----RTARALLGPDKIIGVSCKTPEE--------------AH-QAWIDGA-- 422 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~----~~~~~~~~~~~~ig~s~~~~~e--------------~~-~a~~~g~-- 422 (514)
.++...++|+++|-++.+... . .+.+..+..+..+-+-+....| +. ....++.
T Consensus 80 S~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~ 159 (251)
T COG0149 80 SAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAGKTLEVLKRQLAAALAALSPEA 159 (251)
T ss_pred CHHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhccChHHHHHHHHHHHHhhcCccc
Confidence 466777888888877664321 1 2344455567776666654331 21 2224445
Q ss_pred -cEEEeccccCCCCCCCCccCCH----HHHHHHHHcC-----CCCEEEECCCCcccHHHHHH-CCCCCCceEEEeecccC
Q 010244 423 -NYIGCGGVYPTNTKANNLTVGL----DGLKTVCLAS-----KLPVVAIGGIGISNASDVMK-IGVSNLKGVAVVSALFD 491 (514)
Q Consensus 423 -d~v~~~~vf~t~~k~~~~~~g~----~~l~~~~~~~-----~~pv~a~GGi~~~~~~~~~~-~Ga~~~~gva~~~~i~~ 491 (514)
++|.+=|+..=.|...+++-.. ..++.+.... ++||.-=|+|+++|+.+++. .+++ |+-+||+-+.
T Consensus 160 ~~vIAYEPvWAIGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~id---G~LVGgAslk 236 (251)
T COG0149 160 NIVIAYEPVWAIGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDID---GALVGGASLK 236 (251)
T ss_pred CeEEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCC---eEEEcceeec
Confidence 7787777775443333322222 3445554443 78999999999999988665 6666 9999999999
Q ss_pred CCCHHHHHHHHHH
Q 010244 492 RECILPESKKLHA 504 (514)
Q Consensus 492 ~~~~~~~~~~~~~ 504 (514)
++|+...++.+.+
T Consensus 237 a~~f~~ii~~~~~ 249 (251)
T COG0149 237 ADDFLAILEALAK 249 (251)
T ss_pred chhHHHHHHHHhh
Confidence 9999988887764
No 377
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=94.42 E-value=2.7 Score=42.12 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCCCEEEEEcCCC-------CHHHHHHHHHHHHHHHhhcCceEEEc-CcHHHHHhCCCCeEEeCCCCCCHH
Q 010244 321 TDAVKAALEGGATIIQLREKDA-------DTRGFLEAAKACLQICCVHGVPLLIN-DRIDIALACDADGVHLGQSDMPAR 392 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~v~-~~~~~a~~~ga~gvhl~~~~~~~~ 392 (514)
.+.+.++++.|.+.|.+--... +.++-.+..+++.++++.+|+.+--. +++- ..+.+..|- .+....
T Consensus 86 ~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~ig-g~e~~~~g~----~d~~~~ 160 (347)
T TIGR01521 86 PATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLG-SLETGMGEA----EDGHGF 160 (347)
T ss_pred HHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecc-ccccccccc----ccCccc
Confidence 3568889999999999976665 67788888899999999998875321 1100 000000000 000000
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCC---CCCCccCCHHHHHHHHHcC-CCCEEEECCCC
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNT---KANNLTVGLDGLKTVCLAS-KLPVVAIGGIG 465 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~---k~~~~~~g~~~l~~~~~~~-~~pv~a~GGi~ 465 (514)
... .... ..-.+|+|+.+=. +-|+|.+.+ |.+.-... +|..+.+.+++++++.+.+ ++|++.=||-.
T Consensus 161 ~~~--~~~~----~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG 234 (347)
T TIGR01521 161 EGV--LDHS----QLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSS 234 (347)
T ss_pred ccc--cchh----hcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCC
Confidence 000 0000 0134788877644 579999765 33322111 2322348899999999998 79999999875
Q ss_pred -----------------------cccHHHHHHCCCCCCceEEEeeccc
Q 010244 466 -----------------------ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 466 -----------------------~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
.+++.++.+.|.. -|=+.+.+.
T Consensus 235 ~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~---KVNi~Tdl~ 279 (347)
T TIGR01521 235 VPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVR---KVNIDTDLR 279 (347)
T ss_pred CchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCe---eEEeChHHH
Confidence 4789999999999 999988875
No 378
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=94.29 E-value=0.59 Score=43.87 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=97.6
Q ss_pred CHHHHHHHHHhC----CCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHH
Q 010244 319 SITDAVKAALEG----GATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTA 394 (514)
Q Consensus 319 ~~~~~~~~~~~~----Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~ 394 (514)
+..+.+..+++. |.-.+|+ ...+.++..+.++++..+..+ +-+=|.-..+- ...+
T Consensus 38 ~~~~~~~~i~~~~~~~~~v~~Qv--~~~d~e~mi~ea~~l~~~~~n--i~IKIP~T~~G-----------------l~A~ 96 (220)
T PRK12653 38 PLEVVLPQLHEAMGGQGRLFAQV--MATTAEGMVNDARKLRSIIAD--IVVKVPVTAEG-----------------LAAI 96 (220)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEE--ecCCHHHHHHHHHHHHHhCCC--EEEEeCCCHHH-----------------HHHH
Confidence 344444444432 3445555 356778888888877765432 22222222110 1111
Q ss_pred HhhcCCC-cEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCccc
Q 010244 395 RALLGPD-KIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGISN 468 (514)
Q Consensus 395 ~~~~~~~-~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~~~ 468 (514)
+.....+ ......|.|+.++..|...|++|| ..|-..-.. ...-|.+.++++.+.+ +..|++..=-+++.
T Consensus 97 ~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yI---spyvgR~~~-~g~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~ 172 (220)
T PRK12653 97 KMLKAEGIPTLGTAVYGAAQGLLSALAGAEYV---APYVNRIDA-QGGSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQ 172 (220)
T ss_pred HHHHHcCCCeeEEEecCHHHHHHHHhcCCcEE---EeecChHhh-cCCChHHHHHHHHHHHHhcCCCcEEEEEecCCHHH
Confidence 1111112 233455789999999999999998 444332211 1112555555554432 56688877667888
Q ss_pred HHHHHHCCCCCCceEEEeeccc----CCCCHHHHHHHHHHHHHHHhh
Q 010244 469 ASDVMKIGVSNLKGVAVVSALF----DRECILPESKKLHAVLMDAVQ 511 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~----~~~~~~~~~~~~~~~~~~~~~ 511 (514)
+.++..+|++ .+-+.-.++ ..+-..+.++.|.+.|.+...
T Consensus 173 v~~~~~~G~d---~vTip~~vl~~l~~~p~t~~~~~~F~~dw~~~~~ 216 (220)
T PRK12653 173 ALDCLLAGCE---SITLPLDVAQQMISYPAVDAAVAKFEQDWQGAFG 216 (220)
T ss_pred HHHHHHcCCC---EEECCHHHHHHHHcCCchHHHHHHHHHHHHHhhC
Confidence 8888899999 888766655 556678888999998887643
No 379
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.23 E-value=0.63 Score=46.55 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=58.9
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-CCEEEECCC-CcccHHHHHH-CCCCCCceEEEeeccc
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-LPVVAIGGI-GISNASDVMK-IGVSNLKGVAVVSALF 490 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-~pv~a~GGi-~~~~~~~~~~-~Ga~~~~gva~~~~i~ 490 (514)
++.+.+.|++.+.+..=-.. -....+..|+.+.++++.++ +||++=|+| +++++.++++ .|++ ||-+|++.+
T Consensus 158 a~~~~~~g~~~ltVHgRtr~--~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D---gVMigRga~ 232 (323)
T COG0042 158 ARILEDAGADALTVHGRTRA--QGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD---GVMIGRGAL 232 (323)
T ss_pred HHHHHhcCCCEEEEecccHH--hcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC---EEEEcHHHc
Confidence 55566788999977431111 11123478999999999997 999999999 5899999888 5789 999999998
Q ss_pred CCCCH
Q 010244 491 DRECI 495 (514)
Q Consensus 491 ~~~~~ 495 (514)
..+..
T Consensus 233 ~nP~l 237 (323)
T COG0042 233 GNPWL 237 (323)
T ss_pred cCCcH
Confidence 76543
No 380
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.17 E-value=0.65 Score=42.90 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=52.3
Q ss_pred HHhhcCCCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHH
Q 010244 394 ARALLGPDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDV 472 (514)
Q Consensus 394 ~~~~~~~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~ 472 (514)
+++.+ ++.++|+.+ .|.++++.|.+.|++|+ ++|.+ ..+.++.. ...++|+++ |-.|+..+..+
T Consensus 49 l~~~~-~~~~vGAGTVl~~e~a~~ai~aGA~Fi-vSP~~-----------~~~vi~~a-~~~~i~~iP-G~~TptEi~~A 113 (201)
T PRK06015 49 VAAEV-EEAIVGAGTILNAKQFEDAAKAGSRFI-VSPGT-----------TQELLAAA-NDSDVPLLP-GAATPSEVMAL 113 (201)
T ss_pred HHHHC-CCCEEeeEeCcCHHHHHHHHHcCCCEE-ECCCC-----------CHHHHHHH-HHcCCCEeC-CCCCHHHHHHH
Confidence 34444 578999755 69999999999999998 44433 35555544 345777665 77899999999
Q ss_pred HHCCCC
Q 010244 473 MKIGVS 478 (514)
Q Consensus 473 ~~~Ga~ 478 (514)
+++|++
T Consensus 114 ~~~Ga~ 119 (201)
T PRK06015 114 REEGYT 119 (201)
T ss_pred HHCCCC
Confidence 999999
No 381
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.12 E-value=3.5 Score=41.23 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCC----------------------CHHHH-------HHHHHHHHHHHhhcCceEEEc
Q 010244 318 RSITDAVKAALEGGATIIQLREKDA----------------------DTRGF-------LEAAKACLQICCVHGVPLLIN 368 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~----------------------~~~~~-------~~~~~~~~~~~~~~~~~l~v~ 368 (514)
+...+.++++.++|++.|-+..... +..+. .+..+++.+.|+++|+.++..
T Consensus 17 ~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~st 96 (327)
T TIGR03586 17 ERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFSS 96 (327)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEc
Confidence 4577788888899988765532111 11111 122356778899999988753
Q ss_pred ----CcHHHHHhCCCCeEEeCCCCCC-HHHHHhh--cCCCcEEEEecCCHHHHHHhh----hCCC-cEEEec--cccCCC
Q 010244 369 ----DRIDIALACDADGVHLGQSDMP-ARTARAL--LGPDKIIGVSCKTPEEAHQAW----IDGA-NYIGCG--GVYPTN 434 (514)
Q Consensus 369 ----~~~~~a~~~ga~gvhl~~~~~~-~~~~~~~--~~~~~~ig~s~~~~~e~~~a~----~~g~-d~v~~~--~vf~t~ 434 (514)
++++....+|++.+-+++.+.. ...++.. .+.+.++...-.|.+|+..|. +.|. +++++. .-||+
T Consensus 97 pfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~- 175 (327)
T TIGR03586 97 PFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPA- 175 (327)
T ss_pred cCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCC-
Confidence 3677888999999999997743 2223322 344555554455899977766 4566 565542 11232
Q ss_pred CCCCCccCCHHHHHHHHHcCCCCEEEECCCCc-ccHHHHHHCCCC
Q 010244 435 TKANNLTVGLDGLKTVCLASKLPVVAIGGIGI-SNASDVMKIGVS 478 (514)
Q Consensus 435 ~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~-~~~~~~~~~Ga~ 478 (514)
....+.+..+..+++.+++||--.+-... .-......+||.
T Consensus 176 ---~~~~~nL~~i~~lk~~f~~pVG~SDHt~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 176 ---PLEDANLRTIPDLAERFNVPVGLSDHTLGILAPVAAVALGAC 217 (327)
T ss_pred ---CcccCCHHHHHHHHHHhCCCEEeeCCCCchHHHHHHHHcCCC
Confidence 13457889999999888999833332221 222345566776
No 382
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.11 E-value=1.4 Score=41.49 Aligned_cols=65 Identities=25% Similarity=0.304 Sum_probs=49.1
Q ss_pred CCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCC
Q 010244 400 PDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVS 478 (514)
Q Consensus 400 ~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~ 478 (514)
++.++|+.+ .|+++++.|.+.|++|+ ++|.+ ..+.++... ..++|+++ |-.|+..+..++++|++
T Consensus 69 p~~~vGaGTVl~~e~a~~a~~aGA~Fi-VsP~~-----------~~~v~~~~~-~~~i~~iP-G~~TpsEi~~A~~~Ga~ 134 (222)
T PRK07114 69 PGMILGVGSIVDAATAALYIQLGANFI-VTPLF-----------NPDIAKVCN-RRKVPYSP-GCGSLSEIGYAEELGCE 134 (222)
T ss_pred CCeEEeeEeCcCHHHHHHHHHcCCCEE-ECCCC-----------CHHHHHHHH-HcCCCEeC-CCCCHHHHHHHHHCCCC
Confidence 468899755 59999999999999998 44533 345444443 45777654 67799999999999999
No 383
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.06 E-value=6.5 Score=38.54 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC-----CCCEEEECCCCc-ccHHHHHHCCCCCCceEEEee
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGI-SNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~-~~~~~~~~~Ga~~~~gva~~~ 487 (514)
++.+.++|||.+++- .. ....+.++++.+.+ ++|+++..+-++ -.+.++.++|+. -|..+.
T Consensus 175 a~ay~eAGAD~ifv~-~~---------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~---~v~~~~ 241 (285)
T TIGR02320 175 AEAYAEAGADGIMIH-SR---------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGIS---VVIYAN 241 (285)
T ss_pred HHHHHHcCCCEEEec-CC---------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCC---EEEEhH
Confidence 556779999999763 10 12355566666554 468887665433 368999999999 988887
Q ss_pred ccc
Q 010244 488 ALF 490 (514)
Q Consensus 488 ~i~ 490 (514)
.++
T Consensus 242 ~~~ 244 (285)
T TIGR02320 242 HLL 244 (285)
T ss_pred HHH
Confidence 766
No 384
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=94.04 E-value=0.22 Score=47.75 Aligned_cols=76 Identities=22% Similarity=0.157 Sum_probs=60.6
Q ss_pred ecCCHHHHHHhh-hCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEE
Q 010244 407 SCKTPEEAHQAW-IDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 407 s~~~~~e~~~a~-~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~ 485 (514)
|..+|.|..+.+ +.|++++ |+-.-.. ..+...+.++++++ .++||-.-|||..+++..++++|++ -|.+
T Consensus 41 ~~~dP~~~A~~~~~~Ga~~l---HvVDLdg---g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~---rVii 110 (262)
T PLN02446 41 SDKSAAEFAEMYKRDGLTGG---HVIMLGA---DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGAS---HVIV 110 (262)
T ss_pred CCCCHHHHHHHHHHCCCCEE---EEEECCC---CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCC---EEEE
Confidence 346777755544 6899998 7766432 22345788999988 7899999999999999999999999 9999
Q ss_pred eecccCC
Q 010244 486 VSALFDR 492 (514)
Q Consensus 486 ~~~i~~~ 492 (514)
+|..+..
T Consensus 111 gT~Av~~ 117 (262)
T PLN02446 111 TSYVFRD 117 (262)
T ss_pred chHHHhC
Confidence 9988864
No 385
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.01 E-value=0.25 Score=47.07 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=59.5
Q ss_pred CHHHHHHhh-hCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEAHQAW-IDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~~~a~-~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|.|+.+.+ +.|+|.+ ++++-..-. ......+.++++.+.+.+|+..-|||. .+++..++.+||+ -|.+++
T Consensus 36 dp~~~a~~~~~~g~~~l---~i~DLd~~~-~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~---~viigt 108 (233)
T cd04723 36 DPLDVARAYKELGFRGL---YIADLDAIM-GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGAS---RVIVGT 108 (233)
T ss_pred CHHHHHHHHHHCCCCEE---EEEeCcccc-CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCC---eEEEcc
Confidence 666655444 6799999 666644322 233468889999988899999999997 5999999999999 999999
Q ss_pred cccCC
Q 010244 488 ALFDR 492 (514)
Q Consensus 488 ~i~~~ 492 (514)
..+..
T Consensus 109 ~~~~~ 113 (233)
T cd04723 109 ETLPS 113 (233)
T ss_pred eeccc
Confidence 87754
No 386
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.92 E-value=4.7 Score=40.38 Aligned_cols=157 Identities=19% Similarity=0.203 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCC----------------------CHHHH-------HHHHHHHHHHHhhcCceEEEc
Q 010244 318 RSITDAVKAALEGGATIIQLREKDA----------------------DTRGF-------LEAAKACLQICCVHGVPLLIN 368 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~----------------------~~~~~-------~~~~~~~~~~~~~~~~~l~v~ 368 (514)
+...+.++++.++|++.|-+..... +..++ .+..+.+.+.|+++|+.++..
T Consensus 16 ~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st 95 (329)
T TIGR03569 16 ELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLST 95 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 4567788888889988877643210 11111 133567888999999988753
Q ss_pred ----CcHHHHHhCCCCeEEeCCCCCC-HHHHHhh--cCCCcEEEEecCCHHHHHHhh----hCCCc---EEEe--ccccC
Q 010244 369 ----DRIDIALACDADGVHLGQSDMP-ARTARAL--LGPDKIIGVSCKTPEEAHQAW----IDGAN---YIGC--GGVYP 432 (514)
Q Consensus 369 ----~~~~~a~~~ga~gvhl~~~~~~-~~~~~~~--~~~~~~ig~s~~~~~e~~~a~----~~g~d---~v~~--~~vf~ 432 (514)
.+++...++|++.+-+++.+.. ...++.. .+.+.++...-.|.+|+..|. +.|.+ ++++ ...||
T Consensus 96 pfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP 175 (329)
T TIGR03569 96 PFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYP 175 (329)
T ss_pred eCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCC
Confidence 3678888999999999987753 2233333 334555554455899977765 45654 6654 23344
Q ss_pred CCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCccc-HHHHHHCCCC
Q 010244 433 TNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISN-ASDVMKIGVS 478 (514)
Q Consensus 433 t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~-~~~~~~~Ga~ 478 (514)
++ .....+..+..+++.+++||--.+-..... ......+||.
T Consensus 176 ~~----~~~~nL~~I~~Lk~~f~~pVG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 176 AP----FEDVNLNAMDTLKEAFDLPVGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred CC----cccCCHHHHHHHHHHhCCCEEECCCCccHHHHHHHHHcCCC
Confidence 32 344688999999988899988654333211 2345567777
No 387
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.89 E-value=3.5 Score=41.41 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC-------HHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCC-----
Q 010244 321 TDAVKAALEGGATIIQLREKDAD-------TRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSD----- 388 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~----- 388 (514)
.+.+.++++.|.+.|.+--..++ .++-.+.-+++.++|+.+|+.+-- ++| |++...
T Consensus 88 ~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEa--------ELG----~igg~e~~~~g 155 (347)
T PRK13399 88 PATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEG--------ELG----CLGSLETGEAG 155 (347)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEE--------Eee----eccCccccccc
Confidence 35688999999999999777665 677788888999999999886632 111 111100
Q ss_pred -CCHHHHHhhcCCCcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCC---CCCCccCCHHHHHHHHHcC-CCCEEE
Q 010244 389 -MPARTARALLGPDKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNT---KANNLTVGLDGLKTVCLAS-KLPVVA 460 (514)
Q Consensus 389 -~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~---k~~~~~~g~~~l~~~~~~~-~~pv~a 460 (514)
..-.......... .--.+|+|+.+-. +-|+|.+.+ |.+.-... +|..+.+.++.++++.+.+ ++|++.
T Consensus 156 ~ed~~~~~~~~~~~----~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVL 231 (347)
T PRK13399 156 EEDGVGAEGKLSHD----QMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVM 231 (347)
T ss_pred ccCCcccccccccc----ccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEE
Confidence 0000000000000 1134789877755 569998765 33322111 2333448899999999998 799999
Q ss_pred ECCCC-----------------------cccHHHHHHCCCCCCceEEEeeccc
Q 010244 461 IGGIG-----------------------ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 461 ~GGi~-----------------------~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
=||-. .++++++.+.|.. -|=+.+.+.
T Consensus 232 HGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~---KINi~Tdl~ 281 (347)
T PRK13399 232 HGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVR---KVNIDTDIR 281 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCe---EEEeChHHH
Confidence 99875 4789999999999 998888775
No 388
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=93.85 E-value=0.32 Score=45.43 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHhC-CCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE-cCcHHHHHhCCCCeE--EeCCC----CC
Q 010244 318 RSITDAVKAALEG-GATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI-NDRIDIALACDADGV--HLGQS----DM 389 (514)
Q Consensus 318 ~~~~~~~~~~~~~-Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v-~~~~~~a~~~ga~gv--hl~~~----~~ 389 (514)
++..+..+.+.+. |..+|.+.... +-.+.++.+.+.--+.+++.+. ..+...|.++||++| +++.- ..
T Consensus 64 e~~i~~a~~l~~~~~~~~iKIP~T~----~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~d 139 (211)
T cd00956 64 EGMVAEARKLASLGGNVVVKIPVTE----DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGGD 139 (211)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCcH----hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCCC
Confidence 4566667777666 55555554433 3344444444321112222222 235668889999985 22220 01
Q ss_pred ------CHHHHHhhcC-CCcEEEEecCCHHHHHHhhhCCCcEEEec
Q 010244 390 ------PARTARALLG-PDKIIGVSCKTPEEAHQAWIDGANYIGCG 428 (514)
Q Consensus 390 ------~~~~~~~~~~-~~~~ig~s~~~~~e~~~a~~~g~d~v~~~ 428 (514)
......+..+ +..++.+|+.|++|+.+|...|+|++.++
T Consensus 140 g~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 140 GMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeC
Confidence 1112222222 45678999999999999999999999775
No 389
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=93.81 E-value=0.19 Score=46.51 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=59.3
Q ss_pred CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|-| ++...+.|||-+.|=-+-.+ +.+ ...-++-+++.++.+.+|+..-|||. .+++..++.+||+ -|.+-|
T Consensus 31 DpVelA~~Y~e~GADElvFlDItAs--~~g-r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGAD---KVSINs 104 (256)
T COG0107 31 DPVELAKRYNEEGADELVFLDITAS--SEG-RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGAD---KVSINS 104 (256)
T ss_pred ChHHHHHHHHHcCCCeEEEEecccc--ccc-chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCC---eeeeCh
Confidence 5555 55566899999966443332 222 22457888889998999999999996 8999999999999 999988
Q ss_pred cccCCCC
Q 010244 488 ALFDREC 494 (514)
Q Consensus 488 ~i~~~~~ 494 (514)
+-..+++
T Consensus 105 aAv~~p~ 111 (256)
T COG0107 105 AAVKDPE 111 (256)
T ss_pred hHhcChH
Confidence 7664433
No 390
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.78 E-value=2.4 Score=39.59 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=53.0
Q ss_pred HHHhhcCCCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHH
Q 010244 393 TARALLGPDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASD 471 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~ 471 (514)
.+++.+ ++..+|+.+ .|.++++.|.+.|+||+ ++|.+ ..+.++... ..++|+++ |-.|+..+.+
T Consensus 59 ~l~~~~-p~~~IGAGTVl~~~~a~~a~~aGA~Fi-vsP~~-----------~~~vi~~a~-~~~i~~iP-G~~TptEi~~ 123 (212)
T PRK05718 59 LIAKEV-PEALIGAGTVLNPEQLAQAIEAGAQFI-VSPGL-----------TPPLLKAAQ-EGPIPLIP-GVSTPSELML 123 (212)
T ss_pred HHHHHC-CCCEEEEeeccCHHHHHHHHHcCCCEE-ECCCC-----------CHHHHHHHH-HcCCCEeC-CCCCHHHHHH
Confidence 445444 478888755 58999999999999999 33433 244454443 34565543 6678888999
Q ss_pred HHHCCCCCCceEEE
Q 010244 472 VMKIGVSNLKGVAV 485 (514)
Q Consensus 472 ~~~~Ga~~~~gva~ 485 (514)
++++|++ .+-+
T Consensus 124 a~~~Ga~---~vKl 134 (212)
T PRK05718 124 GMELGLR---TFKF 134 (212)
T ss_pred HHHCCCC---EEEE
Confidence 9999999 7655
No 391
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.77 E-value=6.9 Score=37.84 Aligned_cols=138 Identities=20% Similarity=0.203 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhcCceEEE----cCcHHHHHhCCCCeEEeCCCCCCH-HHHHhhcCCCcEEEEecC---CHHHHHHhh--
Q 010244 349 EAAKACLQICCVHGVPLLI----NDRIDIALACDADGVHLGQSDMPA-RTARALLGPDKIIGVSCK---TPEEAHQAW-- 418 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~v----~~~~~~a~~~ga~gvhl~~~~~~~-~~~~~~~~~~~~ig~s~~---~~~e~~~a~-- 418 (514)
+-.+.+.+.|+++|++++. ..+++.+.+. ++.+.++..+... ..++..-+.++.+.++.. |++|+..|.
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 3455677889999998865 3467778788 8999999876543 333444445666666654 888877665
Q ss_pred --hCCCcEEEeccc-cCCCCCCCCccCCHHHHHHHHHcCCCCEEE----ECCCC---cccHHHHHHCCCCCCceEEEeec
Q 010244 419 --IDGANYIGCGGV-YPTNTKANNLTVGLDGLKTVCLASKLPVVA----IGGIG---ISNASDVMKIGVSNLKGVAVVSA 488 (514)
Q Consensus 419 --~~g~d~v~~~~v-f~t~~k~~~~~~g~~~l~~~~~~~~~pv~a----~GGi~---~~~~~~~~~~Ga~~~~gva~~~~ 488 (514)
+.|.+-+.+.+- ..+..........+..+..+++.++.||.. .+|-. +.-.......||+ |+.+-.-
T Consensus 155 i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~---gl~iE~H 231 (260)
T TIGR01361 155 ILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGAD---GLMIEVH 231 (260)
T ss_pred HHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCC---EEEEEeC
Confidence 456644444332 211101123346888899998878999998 44421 2224467789999 9988877
Q ss_pred cc
Q 010244 489 LF 490 (514)
Q Consensus 489 i~ 490 (514)
+.
T Consensus 232 ~t 233 (260)
T TIGR01361 232 PD 233 (260)
T ss_pred CC
Confidence 76
No 392
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.64 E-value=0.69 Score=43.43 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=69.8
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEE--EcC--cHHHHHhCCCCeEEeCCCCC-----C---
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLL--IND--RIDIALACDADGVHLGQSDM-----P--- 390 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~~--~~~~a~~~ga~gvhl~~~~~-----~--- 390 (514)
.++.+++.|++.+.+-....+.+.+.+ +.+.+..+|...+ +++ ..+.+.+.|++.+-++..+. .
T Consensus 86 ~v~~~~~~Gad~v~l~~~~~~~~~~~~----~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~ 161 (217)
T cd00331 86 QIYEARAAGADAVLLIVAALDDEQLKE----LYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNT 161 (217)
T ss_pred HHHHHHHcCCCEEEEeeccCCHHHHHH----HHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHH
Confidence 588899999999998777766544333 3334455666543 444 24567788999775443331 1
Q ss_pred HHHHHhhc--CCCcEEEEecCCHHHHHHhhhCCCcEEEeccccC
Q 010244 391 ARTARALL--GPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYP 432 (514)
Q Consensus 391 ~~~~~~~~--~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~ 432 (514)
...+++.. ....+.+...++++++.++.+.|+|.+.+|.-+-
T Consensus 162 ~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 162 TERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 12333332 2244556678899999999999999999987654
No 393
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=93.28 E-value=0.083 Score=52.60 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeecccCC-C-CHHHHHHHHHHHHH
Q 010244 441 TVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALFDR-E-CILPESKKLHAVLM 507 (514)
Q Consensus 441 ~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~~~-~-~~~~~~~~~~~~~~ 507 (514)
+..+..+.++.+.. ++||++.|||. .+++.+++.+||+ .|.++++++.. . -+.+..+.|.+.++
T Consensus 225 p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~---~Vqv~ta~~~~gp~~~~~i~~~L~~~l~ 293 (310)
T PRK02506 225 PTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGAS---MVQVGTALHKEGPAVFERLTKELKAIMA 293 (310)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCC---HHhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 34566777777766 69999999996 7899999999999 99999999852 2 12334444444443
No 394
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=93.26 E-value=5.3 Score=40.12 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=97.4
Q ss_pred HHHHHHHhCC-----------CCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCC
Q 010244 322 DAVKAALEGG-----------ATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMP 390 (514)
Q Consensus 322 ~~~~~~~~~G-----------v~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~ 390 (514)
++++.+++.| .+.|.+--.+.+-++-.+..+++.++|+.+|+.+--. +| |++.....
T Consensus 115 ~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaE--------LG----~vgG~Ed~ 182 (357)
T TIGR01520 115 PWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIE--------IG----ITGGEEDG 182 (357)
T ss_pred HHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------ec----ccCCccCC
Confidence 4566676664 8999999899999999999999999999998866431 11 22211110
Q ss_pred HHHHHhhcCCCcEEEEecCCHHHHHHhhh-C----CCcEEEe--ccccCCCCCCCCccCCHHHHHHHH----HcCCCC--
Q 010244 391 ARTARALLGPDKIIGVSCKTPEEAHQAWI-D----GANYIGC--GGVYPTNTKANNLTVGLDGLKTVC----LASKLP-- 457 (514)
Q Consensus 391 ~~~~~~~~~~~~~ig~s~~~~~e~~~a~~-~----g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~----~~~~~p-- 457 (514)
. ... ..... .--.+|+|+.+-.+ . |+|.+.+ |.+.-.. |++.+.+.++.|+++. +..++|
T Consensus 183 ~-~~~-~~~~~----~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Y-k~~~p~Ld~d~L~~I~~~~~~~~~vP~~ 255 (357)
T TIGR01520 183 V-DNS-HMDAE----ALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVY-KPGNVKLTPDILADGQEYVSEKLGLPAA 255 (357)
T ss_pred c-ccc-ccccc----ccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCc-CCCCCccCHHHHHHHHHHHHHhcCCCcC
Confidence 0 000 00000 11347999887654 2 8898755 4443321 2233558899999994 455777
Q ss_pred ----EEEECCCC--cccHHHHHHCCCCCCceEEEeeccc
Q 010244 458 ----VVAIGGIG--ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 458 ----v~a~GGi~--~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
++.=||-. .+++.++++.|.. -|=+.+.+.
T Consensus 256 ~~~pLVLHGgSGi~~e~i~kai~~GI~---KINi~Tdl~ 291 (357)
T TIGR01520 256 KPLFFVFHGGSGSTKQEIKEALSYGVV---KMNIDTDTQ 291 (357)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHCCCe---EEEeCcHHH
Confidence 88888765 6889999999999 998888775
No 395
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.25 E-value=2.4 Score=40.35 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCC--------CHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDA--------DTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~ 389 (514)
....+.++...+.|+..++|-+... +.+++.+.++...+.....+ ++|+-+.|....
T Consensus 85 ~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~--~~I~ARTDa~~~------------- 149 (238)
T PF13714_consen 85 ENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPD--FVIIARTDAFLR------------- 149 (238)
T ss_dssp HHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTT--SEEEEEECHHCH-------------
T ss_pred HHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCe--EEEEEecccccc-------------
Confidence 3678889999999999999977721 44444444444444333333 444443332211
Q ss_pred CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccH
Q 010244 390 PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNA 469 (514)
Q Consensus 390 ~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~ 469 (514)
...... ...+-++...+.|||.|++-.+ ...+.++++++.++.|+...-+-..-++
T Consensus 150 ~~~~~d-------------eaI~R~~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~v~~~~~~~~~ 205 (238)
T PF13714_consen 150 AEEGLD-------------EAIERAKAYAEAGADMIFIPGL-----------QSEEEIERIVKAVDGPLNVNPGPGTLSA 205 (238)
T ss_dssp HHHHHH-------------HHHHHHHHHHHTT-SEEEETTS-----------SSHHHHHHHHHHHSSEEEEETTSSSS-H
T ss_pred CCCCHH-------------HHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEcCCCCCCH
Confidence 000000 0133356667999999965321 2456688888888999888875434778
Q ss_pred HHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHH
Q 010244 470 SDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLM 507 (514)
Q Consensus 470 ~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~ 507 (514)
.++.++|+. -|..+..++ ....+.+++.++
T Consensus 206 ~eL~~lGv~---~v~~~~~~~-----~aa~~a~~~~~~ 235 (238)
T PF13714_consen 206 EELAELGVK---RVSYGNSLL-----RAAMKAMRDAAE 235 (238)
T ss_dssp HHHHHTTES---EEEETSHHH-----HHHHHHHHHHHH
T ss_pred HHHHHCCCc---EEEEcHHHH-----HHHHHHHHHHHH
Confidence 999999999 998887776 345555555444
No 396
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.14 E-value=0.38 Score=45.94 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=59.4
Q ss_pred CCHHHHHHh-hhCCCcEEEeccccCCCC-CCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEE
Q 010244 409 KTPEEAHQA-WIDGANYIGCGGVYPTNT-KANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 409 ~~~~e~~~a-~~~g~d~v~~~~vf~t~~-k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~ 485 (514)
.+|.++.+. .+.|+|.+ ++.+-+. +.+ .+...+.++++.+.+ .|+..-|||. .+++..++++|++ -|.+
T Consensus 30 ~dP~~~A~~~~~~ga~~l---hivDLd~a~~g-~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~---rvvi 101 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLI---HVVDLSKAIEN-SVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYR---RQIV 101 (241)
T ss_pred CCHHHHHHHHHHCCCCEE---EEEECCCcccC-CcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCC---EEEE
Confidence 477775544 47899999 6666442 222 224678889998876 7999999997 6999999999999 9999
Q ss_pred eecccCCCC
Q 010244 486 VSALFDREC 494 (514)
Q Consensus 486 ~~~i~~~~~ 494 (514)
++..+...+
T Consensus 102 gT~a~~~p~ 110 (241)
T PRK14114 102 SSKVLEDPS 110 (241)
T ss_pred CchhhCCHH
Confidence 998876443
No 397
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.14 E-value=0.7 Score=41.81 Aligned_cols=104 Identities=25% Similarity=0.201 Sum_probs=58.0
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCC-HHHHHHHHHHHHHHHhhcCceEEEcC-----cHHHHHhCCCCeEEeCCC-------
Q 010244 321 TDAVKAALEGGATIIQLREKDAD-TRGFLEAAKACLQICCVHGVPLLIND-----RIDIALACDADGVHLGQS------- 387 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~-~~~~~~~~~~~~~~~~~~~~~l~v~~-----~~~~a~~~ga~gvhl~~~------- 387 (514)
.+-++++++.|+++|-+--.... +..+.++++++++ ++ .++..| +...|.++|+|.|-.+-.
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~---~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~ 128 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKE---KY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTK 128 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHH---CT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTST
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHH---hC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCC
Confidence 45688899999999998433221 1344455554543 34 344433 344677899998854321
Q ss_pred --CCCHHHHHhhcCCCcEEEE--ecCCHHHHHHhhhCCCcEEEecc
Q 010244 388 --DMPARTARALLGPDKIIGV--SCKTPEEAHQAWIDGANYIGCGG 429 (514)
Q Consensus 388 --~~~~~~~~~~~~~~~~ig~--s~~~~~e~~~a~~~g~d~v~~~~ 429 (514)
.++...+++....+..+.+ ..|||+++.++.++|++.|++|.
T Consensus 129 ~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 129 GDGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp TSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred CCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 1223333433333444433 45799999999999999999986
No 398
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=93.06 E-value=11 Score=37.91 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=107.8
Q ss_pred EEEEeC-CCCCccCCCCHHHHHHHHHhCCCCEEE--EEcCCCCHHHH----HHHHHHHHHHHhhcCceEEE----cCcHH
Q 010244 304 LYAVTD-SGMNKKWGRSITDAVKAALEGGATIIQ--LREKDADTRGF----LEAAKACLQICCVHGVPLLI----NDRID 372 (514)
Q Consensus 304 ly~it~-~~~~~~~~~~~~~~~~~~~~~Gv~~v~--lr~~~~~~~~~----~~~~~~~~~~~~~~~~~l~v----~~~~~ 372 (514)
+.+|.. ..... .+.+.+..+.+-+.|.+++. ...+.-++..+ .+-.+.+.+.|+++|.+++. ..+++
T Consensus 94 ~~~IAGPCsiEs--~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~ 171 (335)
T PRK08673 94 PVVIAGPCSVES--EEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVE 171 (335)
T ss_pred eEEEEecCccCC--HHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHH
Confidence 444554 33322 34566667777678876542 22222222111 23344677788999998865 23577
Q ss_pred HHHhCCCCeEEeCCCCCCH-HHHHhhcCCCcEEEEecC---CHHHHHHhh----hCCCcEEEecc----ccCCCCCCCCc
Q 010244 373 IALACDADGVHLGQSDMPA-RTARALLGPDKIIGVSCK---TPEEAHQAW----IDGANYIGCGG----VYPTNTKANNL 440 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~~~-~~~~~~~~~~~~ig~s~~---~~~e~~~a~----~~g~d~v~~~~----vf~t~~k~~~~ 440 (514)
.+.++ +|.+.++..+... ..++..-+.++.+..+.. |++|+..|. ..|-+-+.+.. -|++. ...
T Consensus 172 ~l~~~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~---~~~ 247 (335)
T PRK08673 172 LVAEY-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETA---TRN 247 (335)
T ss_pred HHHHh-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCc---Chh
Confidence 77777 8999999876542 233333344555555553 788877655 45665555533 33221 134
Q ss_pred cCCHHHHHHHHHcCCCCEEEE----CCCC---cccHHHHHHCCCCCCceEEEeeccc
Q 010244 441 TVGLDGLKTVCLASKLPVVAI----GGIG---ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 441 ~~g~~~l~~~~~~~~~pv~a~----GGi~---~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
.+.+..+..+++.++.||+.. +|.. +.-......+||+ |+.+-.-+.
T Consensus 248 ~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAd---GliIE~H~~ 301 (335)
T PRK08673 248 TLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGAD---GLIVEVHPD 301 (335)
T ss_pred hhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCC---EEEEEecCC
Confidence 467888888888889999764 3432 2334677889999 998877665
No 399
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.04 E-value=2.6 Score=39.20 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=52.7
Q ss_pred HHHhhcCCCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHH
Q 010244 393 TARALLGPDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASD 471 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~ 471 (514)
.+++.++....+|+.+ .+.+++..|.+.|+||+..+. ...+..+.. ...++ .+..|..|++.+.+
T Consensus 54 ~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~------------~~~~v~~~~-~~~~~-~~~~G~~t~~E~~~ 119 (206)
T PRK09140 54 ALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN------------TDPEVIRRA-VALGM-VVMPGVATPTEAFA 119 (206)
T ss_pred HHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC------------CCHHHHHHH-HHCCC-cEEcccCCHHHHHH
Confidence 4444454458899765 589999999999999994422 233443333 33344 44556788999999
Q ss_pred HHHCCCCCCceEEE
Q 010244 472 VMKIGVSNLKGVAV 485 (514)
Q Consensus 472 ~~~~Ga~~~~gva~ 485 (514)
..+.|++ -+.+
T Consensus 120 A~~~Gad---~vk~ 130 (206)
T PRK09140 120 ALRAGAQ---ALKL 130 (206)
T ss_pred HHHcCCC---EEEE
Confidence 9999999 8874
No 400
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.02 E-value=0.49 Score=46.94 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=57.0
Q ss_pred HhhcCCCcEEEEecC-CHHH---HHHhhhCC--CcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-Ccc
Q 010244 395 RALLGPDKIIGVSCK-TPEE---AHQAWIDG--ANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-GIS 467 (514)
Q Consensus 395 ~~~~~~~~~ig~s~~-~~~e---~~~a~~~g--~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-~~~ 467 (514)
++.......+++|+. +.++ +....+.| +|||++-.- | +.+..-++.++++++..+.|.+..|.+ +.+
T Consensus 76 rk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~a-----h-g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e 149 (321)
T TIGR01306 76 KDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDIA-----H-GHSNSVINMIKHIKTHLPDSFVIAGNVGTPE 149 (321)
T ss_pred HhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCc-----c-CchHHHHHHHHHHHHhCCCCEEEEecCCCHH
Confidence 333333456677765 3433 55555777 799966321 1 123345788999999888898888877 578
Q ss_pred cHHHHHHCCCCCCceEEEe
Q 010244 468 NASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~ 486 (514)
.+..+.++|++ +|-++
T Consensus 150 ~a~~l~~aGad---~I~V~ 165 (321)
T TIGR01306 150 AVRELENAGAD---ATKVG 165 (321)
T ss_pred HHHHHHHcCcC---EEEEC
Confidence 89999999999 98766
No 401
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=93.02 E-value=0.31 Score=48.26 Aligned_cols=76 Identities=13% Similarity=0.134 Sum_probs=49.0
Q ss_pred HHHHHHhhhC---CCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC---CCCEEEECCCCcccHHHHHHCCCCCCceEE
Q 010244 411 PEEAHQAWID---GANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS---KLPVVAIGGIGISNASDVMKIGVSNLKGVA 484 (514)
Q Consensus 411 ~~e~~~a~~~---g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~---~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva 484 (514)
..|+.++.+. ++|.|-+=..-. +.+.++..++.+++..+.. ++.+.+.|||+++|+.++.+.|++ .+.
T Consensus 198 v~eal~~~~~~~~~~d~I~lDn~~~---~~G~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~gvD---~is 271 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLDTPSS---RRGVFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVGVD---AFG 271 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEECCCCC---CCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcCCC---EEE
Confidence 3456666555 488986643210 1122212233333333322 467999999999999999999999 999
Q ss_pred EeecccCC
Q 010244 485 VVSALFDR 492 (514)
Q Consensus 485 ~~~~i~~~ 492 (514)
+|+.+...
T Consensus 272 vGs~~~~~ 279 (302)
T cd01571 272 VGTAISKA 279 (302)
T ss_pred CCcccCCC
Confidence 99988754
No 402
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=92.94 E-value=5.8 Score=37.30 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=69.7
Q ss_pred EEecCCHHHHHHhhhCCCcEEEeccccCCCC-CCCCccCCHHHHHHHHHcC-----CCCEEEECCCCcccHHHHHHCCCC
Q 010244 405 GVSCKTPEEAHQAWIDGANYIGCGGVYPTNT-KANNLTVGLDGLKTVCLAS-----KLPVVAIGGIGISNASDVMKIGVS 478 (514)
Q Consensus 405 g~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~-k~~~~~~g~~~l~~~~~~~-----~~pv~a~GGi~~~~~~~~~~~Ga~ 478 (514)
..-+.|++++..|.+.|++|| ..|-..- ..+.. |.+.+++++..+ +..|++.-=-++.++.++..+|++
T Consensus 110 ~T~ifs~~Qa~~Aa~aGa~yv---sPyvgRi~d~g~D--~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d 184 (222)
T PRK12656 110 ATAIYTVFQGLLAIEAGADYL---APYYNRMENLNID--SNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQ 184 (222)
T ss_pred EeeeCCHHHHHHHHHCCCCEE---ecccchhhhcCCC--HHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCC
Confidence 345789999999999999998 4443221 11111 345555554432 567888876778899999999999
Q ss_pred CCceEEEeeccc----CCCCHHHHHHHHHHHHHHHhh
Q 010244 479 NLKGVAVVSALF----DRECILPESKKLHAVLMDAVQ 511 (514)
Q Consensus 479 ~~~gva~~~~i~----~~~~~~~~~~~~~~~~~~~~~ 511 (514)
.+-+.-.++ ..+-..+.++.|.+.|.+...
T Consensus 185 ---~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~~~~~ 218 (222)
T PRK12656 185 ---AVTAGPDVFEAAFAMPSIQKAVDDFADDWEAIHG 218 (222)
T ss_pred ---EEecCHHHHHHHhcCCcHHHHHHHHHHHHHHhhC
Confidence 888877665 445567888888888887543
No 403
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.85 E-value=2.8 Score=38.02 Aligned_cols=168 Identities=20% Similarity=0.215 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHH------H---H--------HHHHHHHHHHhhcCc--eEEEc----------
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRG------F---L--------EAAKACLQICCVHGV--PLLIN---------- 368 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~------~---~--------~~~~~~~~~~~~~~~--~l~v~---------- 368 (514)
.+....+.-+-.+|.++|+|-.+-.++-. . . ..+-+..+.++..|+ ++++.
T Consensus 32 ~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG 111 (268)
T KOG4175|consen 32 STTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYG 111 (268)
T ss_pred HHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhh
Confidence 34555666666788999999766443211 0 0 011122234444555 44443
Q ss_pred --CcHHHHHhCCCCeEEeCCCCCCH-HHHHhh---cCCCcEEEEecCCHHHHHHhhhCCCc---EEEeccccCCCCCCCC
Q 010244 369 --DRIDIALACDADGVHLGQSDMPA-RTARAL---LGPDKIIGVSCKTPEEAHQAWIDGAN---YIGCGGVYPTNTKANN 439 (514)
Q Consensus 369 --~~~~~a~~~ga~gvhl~~~~~~~-~~~~~~---~~~~~~ig~s~~~~~e~~~a~~~g~d---~v~~~~vf~t~~k~~~ 439 (514)
.+.+.+.++|+.|.-+..--++. ...|+. .+...++-..-.|.+|-+++...-+| |+ +|.+..|.+....
T Consensus 112 ~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYv-VSrmG~TG~~~sv 190 (268)
T KOG4175|consen 112 VENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYV-VSRMGVTGTRESV 190 (268)
T ss_pred HHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEE-EEeccccccHHHH
Confidence 25678899999998875533221 122221 22333333334466665555433333 33 3555555544332
Q ss_pred ccCCHHHHHHHHHcC-CCCEEEECCCC-cccHHHHHHCCCCCCceEEEeeccc
Q 010244 440 LTVGLDGLKTVCLAS-KLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~-~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
...-.+.++++++.. +.|+-.-=|++ +|+..++-.- ++ ||.+||.+.
T Consensus 191 n~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aD---GVvvGSkiv 239 (268)
T KOG4175|consen 191 NEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-AD---GVVVGSKIV 239 (268)
T ss_pred HHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-cc---ceEecHHHH
Confidence 212235677777776 88987766776 8888888777 88 999999986
No 404
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.75 E-value=2.4 Score=41.03 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=70.4
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE--cCc--HHHHHhCCCCeEEeCCCCC-----CH--
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI--NDR--IDIALACDADGVHLGQSDM-----PA-- 391 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v--~~~--~~~a~~~ga~gvhl~~~~~-----~~-- 391 (514)
.+..+...|+++|.+-...++..++. ++.+.++.+|...++ ++. .+.+.++|++.+-++..+. ..
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~----~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~ 200 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLK----ELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLET 200 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHH----HHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHH
Confidence 47889999999999987776654444 445566677887764 443 3567888999765555332 11
Q ss_pred -HHHHhhcCCC-c-EEEEecCCHHHHHHhhhCCCcEEEeccccC
Q 010244 392 -RTARALLGPD-K-IIGVSCKTPEEAHQAWIDGANYIGCGGVYP 432 (514)
Q Consensus 392 -~~~~~~~~~~-~-~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~ 432 (514)
..+.+..+.. . +.....+|++++..+.+.|+|-+++|.-.-
T Consensus 201 ~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 201 TERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 2222223222 2 333466799999999999999999987543
No 405
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=92.73 E-value=6.4 Score=37.79 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=81.6
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE----cC--cHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI----ND--RIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v----~~--~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
.+|.+-..|.++|.+-.-+.... +.++. .+...++..|...+| ++ .++-+++.|++||-+|.-+- .+++++
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~~~-~~~~~-~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~t-aeea~~ 101 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAPND-VLTFI-PQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVES-AEEAER 101 (249)
T ss_pred HHHHHHhcCCCEEEEecccCCCC-HHHHH-HHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCC-HHHHHH
Confidence 44555567788887755543321 22221 222234455555444 22 23456677888887776442 112221
Q ss_pred h--------------------------------cCCCcEEEEecCCHHHHHHhh----hCCCcEEEeccccCCCCC--CC
Q 010244 397 L--------------------------------LGPDKIIGVSCKTPEEAHQAW----IDGANYIGCGGVYPTNTK--AN 438 (514)
Q Consensus 397 ~--------------------------------~~~~~~ig~s~~~~~e~~~a~----~~g~d~v~~~~vf~t~~k--~~ 438 (514)
. ......+.+-+-|++-+..+. ..|+|.+++||.=-+.+- +.
T Consensus 102 ~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~ 181 (249)
T TIGR03239 102 AVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLG 181 (249)
T ss_pred HHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCC
Confidence 1 012234454455544333222 257999999984211110 11
Q ss_pred CccCCHH---HHHHH---HHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeeccc
Q 010244 439 NLTVGLD---GLKTV---CLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 439 ~~~~g~~---~l~~~---~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
..-..+ .+.++ ++..++|+- +-.-+++.+..+++.|+. .+.+++...
T Consensus 182 -~~~~~~v~~a~~~v~~aa~a~G~~~g-~~~~~~~~~~~~~~~G~~---~~~~~~D~~ 234 (249)
T TIGR03239 182 -NPNHPDVQKAIRHIFDRAAAHGKPCG-ILAPVEADARRYLEWGAT---FVAVGSDLG 234 (249)
T ss_pred -CCCCHHHHHHHHHHHHHHHHcCCCEE-EcCCCHHHHHHHHHcCCC---EEEEhHHHH
Confidence 001122 22222 233467763 333467889999999999 999887543
No 406
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=92.71 E-value=0.14 Score=50.62 Aligned_cols=46 Identities=30% Similarity=0.493 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHcCC--CCEEEECCCC-cccHHHHHHCCCCCCceEEEeeccc
Q 010244 442 VGLDGLKTVCLASK--LPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 442 ~g~~~l~~~~~~~~--~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
..+..++++++.++ +||++.|||. .+++.+++.+||+ .|.++|+++
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~---~Vqv~Sal~ 277 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGAS---AVQVCSALI 277 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTES---EEEESHHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCC---Hheechhhh
Confidence 45677777888776 9999999996 8899999999999 999999995
No 407
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.63 E-value=11 Score=37.11 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcCceEEEcC------------cHHHHHhCCCCeEEeCCCCC---------------CH----HHHH--
Q 010244 349 EAAKACLQICCVHGVPLLIND------------RIDIALACDADGVHLGQSDM---------------PA----RTAR-- 395 (514)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~v~~------------~~~~a~~~ga~gvhl~~~~~---------------~~----~~~~-- 395 (514)
+....+..+++..+++|++.- .++...++|+-|+|+..... +. .+++
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa 141 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAA 141 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHH
Confidence 444455555666678888731 25566788999999955321 11 1111
Q ss_pred -h-hcCCCcEEEEecC------CHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC--CCEEEE
Q 010244 396 -A-LLGPDKIIGVSCK------TPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK--LPVVAI 461 (514)
Q Consensus 396 -~-~~~~~~~ig~s~~------~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~--~pv~a~ 461 (514)
. ...++..|-+-+. ..+| ++...+.|||.|++-. .....+.++++++.++ +|++..
T Consensus 142 ~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~----------~~~~~~ei~~~~~~~~~p~pv~~~ 211 (290)
T TIGR02321 142 TAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHS----------RQKTPDEILAFVKSWPGKVPLVLV 211 (290)
T ss_pred HHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecC----------CCCCHHHHHHHHHhcCCCCCeEEe
Confidence 1 1233455544332 3344 3455699999996621 1134778888888775 688776
Q ss_pred CCCCcc-cHHHHHHCC-CCCCceEEEeeccc
Q 010244 462 GGIGIS-NASDVMKIG-VSNLKGVAVVSALF 490 (514)
Q Consensus 462 GGi~~~-~~~~~~~~G-a~~~~gva~~~~i~ 490 (514)
.|-++. +..++.++| +. -|..+...+
T Consensus 212 ~~~~p~~~~~~l~~lg~~~---~v~~g~~~~ 239 (290)
T TIGR02321 212 PTAYPQLTEADIAALSKVG---IVIYGNHAI 239 (290)
T ss_pred cCCCCCCCHHHHHHhcCCc---EEEEChHHH
Confidence 665554 567899998 66 665555554
No 408
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=92.52 E-value=0.83 Score=44.78 Aligned_cols=80 Identities=28% Similarity=0.250 Sum_probs=57.0
Q ss_pred CcEEEEecCCHHHHHHhhhCC-CcEEEeccccCCCCCCCCccCCHHHHHHHHHc---------CCCCEEEECCCCcccHH
Q 010244 401 DKIIGVSCKTPEEAHQAWIDG-ANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA---------SKLPVVAIGGIGISNAS 470 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~~~g-~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~---------~~~pv~a~GGi~~~~~~ 470 (514)
...+-+-+.+.+++.++.+.| +|.|-+=..-+ ..++....+.+. -++.+.+.|||+++++.
T Consensus 184 ~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sggi~~~~i~ 254 (281)
T cd00516 184 IALIDVEVDTLEEALEAAKAGGADGIRLDSGSP---------EELDPAVLILKARAHLDGKGLPRVKIEASGGLDEENIR 254 (281)
T ss_pred eEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCCh---------HHHHHHHHHHHHHHhhhhcCCCceEEEEeCCCCHHHHH
Confidence 345666677899999999999 99995532111 111111112111 25679999999999999
Q ss_pred HHHHCCCCCCceEEEeecccCC
Q 010244 471 DVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
.+.+.|.+ .+++|+.+.+.
T Consensus 255 ~~~~~gvd---~~gvG~~~~~~ 273 (281)
T cd00516 255 AYAETGVD---VFGVGTLLHSA 273 (281)
T ss_pred HHHHcCCC---EEEeCcccccC
Confidence 99999988 99999988864
No 409
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=92.44 E-value=1.2 Score=42.67 Aligned_cols=129 Identities=17% Similarity=0.118 Sum_probs=77.7
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------HH----HHHhhcCCCcEEEEecCCHHHHHH--------------------hhh
Q 010244 370 RIDIALACDADGVHLGQSDMP------AR----TARALLGPDKIIGVSCKTPEEAHQ--------------------AWI 419 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~~----~~~~~~~~~~~ig~s~~~~~e~~~--------------------a~~ 419 (514)
.++...++|+++|-++..... .. +.+..+..++.+-+-+....|.++ ...
T Consensus 78 S~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~ 157 (250)
T PRK00042 78 SAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQ 157 (250)
T ss_pred CHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHH
Confidence 466777888888866654321 11 222355566766665654333222 111
Q ss_pred CCCcEEEeccccCCCCCCCCccCCH----HHHHHHHHc------CCCCEEEECCCCcccHHHHHH-CCCCCCceEEEeec
Q 010244 420 DGANYIGCGGVYPTNTKANNLTVGL----DGLKTVCLA------SKLPVVAIGGIGISNASDVMK-IGVSNLKGVAVVSA 488 (514)
Q Consensus 420 ~g~d~v~~~~vf~t~~k~~~~~~g~----~~l~~~~~~------~~~pv~a~GGi~~~~~~~~~~-~Ga~~~~gva~~~~ 488 (514)
..-.+|..=|++.-.|...+++-.. ..++.+... -+++|+-=|+++++|+.+++. .+++ |+-+|++
T Consensus 158 ~~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vD---G~LVG~A 234 (250)
T PRK00042 158 FANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDID---GALVGGA 234 (250)
T ss_pred hCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCC---EEEEeee
Confidence 2335676677776444332322222 234443321 147999999999999988765 5566 9999999
Q ss_pred ccCCCCHHHHHHH
Q 010244 489 LFDRECILPESKK 501 (514)
Q Consensus 489 i~~~~~~~~~~~~ 501 (514)
.++.+++.+.++.
T Consensus 235 sl~~~~f~~ii~~ 247 (250)
T PRK00042 235 SLKAEDFLAIVKA 247 (250)
T ss_pred eechHHHHHHHHH
Confidence 9988877776654
No 410
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=92.38 E-value=0.33 Score=45.85 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------------------cHHHHHhCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------------------RIDIALACDA 379 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------------------~~~~a~~~ga 379 (514)
+++.+.++++...|+++|++|.............+.+..+.+..+.++++.- -+..+.+.|+
T Consensus 10 ~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 89 (224)
T PF01487_consen 10 EELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGP 89 (224)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence 3456667777777999999999877732222333344444444577887621 1345667788
Q ss_pred CeEEeCCCCCCHHH--HHhhcCCCcEEEEecC----CHHH------HHHhhhCCCcEEEeccccCCCCCCCCccCCH-HH
Q 010244 380 DGVHLGQSDMPART--ARALLGPDKIIGVSCK----TPEE------AHQAWIDGANYIGCGGVYPTNTKANNLTVGL-DG 446 (514)
Q Consensus 380 ~gvhl~~~~~~~~~--~~~~~~~~~~ig~s~~----~~~e------~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~-~~ 446 (514)
+.+-+.....+... .......+..+..|.| ++.. +.++.+.|+|++ ++--+...+ .....+ ..
T Consensus 90 d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv---Kia~~~~~~-~D~~~l~~~ 165 (224)
T PF01487_consen 90 DYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIV---KIAVMANSP-EDVLRLLRF 165 (224)
T ss_dssp SEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEE---EEEEE-SSH-HHHHHHHHH
T ss_pred CEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeE---EEEeccCCH-HHHHHHHHH
Confidence 99888665332211 1122234666777888 4332 456778999998 543322111 111112 23
Q ss_pred HHHHHHcCCCCEEEEC
Q 010244 447 LKTVCLASKLPVVAIG 462 (514)
Q Consensus 447 l~~~~~~~~~pv~a~G 462 (514)
.++..+..+.|+++++
T Consensus 166 ~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 166 TKEFREEPDIPVIAIS 181 (224)
T ss_dssp HHHHHHHTSSEEEEEE
T ss_pred HHHHhhccCCcEEEEE
Confidence 3333333468877664
No 411
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.35 E-value=1.6 Score=42.89 Aligned_cols=111 Identities=17% Similarity=0.121 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCC----------CHHHHHHHHHHHHHHHhhcCceEEE----cCc-------HHHHHh
Q 010244 318 RSITDAVKAALEGGATIIQLREKDA----------DTRGFLEAAKACLQICCVHGVPLLI----NDR-------IDIALA 376 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~v----~~~-------~~~a~~ 376 (514)
+++.+.++.+.+.|++.|++-...+ +++...+.++++++.+ +.++++ ..+ .+.+.+
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV---DIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677888888888999999965432 2334445555555433 556654 111 344567
Q ss_pred CCCCeEEeCCCCC-------------------------------CHHHHHhhc--CCCcEEEEecCCHHHHHHhhhCCCc
Q 010244 377 CDADGVHLGQSDM-------------------------------PARTARALL--GPDKIIGVSCKTPEEAHQAWIDGAN 423 (514)
Q Consensus 377 ~ga~gvhl~~~~~-------------------------------~~~~~~~~~--~~~~~ig~s~~~~~e~~~a~~~g~d 423 (514)
.|+|++++..... ....+++.. ....+..-.++|.+++.+....|||
T Consensus 188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd 267 (289)
T cd02810 188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGAS 267 (289)
T ss_pred cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCcc
Confidence 8999998753210 012333333 2333333456789999999999999
Q ss_pred EEEecccc
Q 010244 424 YIGCGGVY 431 (514)
Q Consensus 424 ~v~~~~vf 431 (514)
.|.++.-+
T Consensus 268 ~V~vg~a~ 275 (289)
T cd02810 268 AVQVATAL 275 (289)
T ss_pred HheEcHHH
Confidence 99887543
No 412
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=92.18 E-value=13 Score=36.61 Aligned_cols=171 Identities=16% Similarity=0.101 Sum_probs=95.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEc--CCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCCCCC
Q 010244 319 SITDAVKAALEGGATIIQLRE--KDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQSDMP 390 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~~~~ 390 (514)
+..+.++.+.+.|++.+.+-. .........+.++.+....++.++++.++. .++...++|++.++++.. ..
T Consensus 66 ei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E-~~ 144 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD-TS 144 (296)
T ss_pred HHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc-CC
Confidence 455555555677887654432 223344445566666666666777665542 344556789999888765 32
Q ss_pred HHHHH----------------hhcCCC------cEEEEecCCHHHH----HHhhhCCCcEEEeccccCCCCCC--CCccC
Q 010244 391 ARTAR----------------ALLGPD------KIIGVSCKTPEEA----HQAWIDGANYIGCGGVYPTNTKA--NNLTV 442 (514)
Q Consensus 391 ~~~~~----------------~~~~~~------~~ig~s~~~~~e~----~~a~~~g~d~v~~~~vf~t~~k~--~~~~~ 442 (514)
....+ .....+ .++|. -.|.+++ ..+.+.++|.+.+.++.|....+ ..++.
T Consensus 145 ~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~ 223 (296)
T TIGR00433 145 QEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKEL 223 (296)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCC
Confidence 21111 111122 24554 3465553 34557899999887777755433 23344
Q ss_pred CH-HHHHHHHH---cCCCCEEEECCCCc----ccHHH-HHHCCCCCCceEEEeecccCCCC
Q 010244 443 GL-DGLKTVCL---ASKLPVVAIGGIGI----SNASD-VMKIGVSNLKGVAVVSALFDREC 494 (514)
Q Consensus 443 g~-~~l~~~~~---~~~~pv~a~GGi~~----~~~~~-~~~~Ga~~~~gva~~~~i~~~~~ 494 (514)
.. +.++.++. .++--.+-++|-.+ +.... ++..|++ ++.+|..++....
T Consensus 224 s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n---~i~~g~~~~~~g~ 281 (296)
T TIGR00433 224 SADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGAN---SIFVGDYLTTTGN 281 (296)
T ss_pred CHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCc---eEEEcCcccCCCC
Confidence 54 44444433 23322234444443 23334 7899999 9999998885443
No 413
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.15 E-value=0.74 Score=43.32 Aligned_cols=107 Identities=25% Similarity=0.223 Sum_probs=65.7
Q ss_pred HHHHHHHhCCCCEEEEEcCCC---CHHHHHHHHHHHHHHHhhcCceEEEc----CcHHHHHhCCCCeEEeCCC-------
Q 010244 322 DAVKAALEGGATIIQLREKDA---DTRGFLEAAKACLQICCVHGVPLLIN----DRIDIALACDADGVHLGQS------- 387 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~---~~~~~~~~~~~~~~~~~~~~~~l~v~----~~~~~a~~~ga~gvhl~~~------- 387 (514)
+.++.+.+.|++++.+..... +.++..++.+.+++.. +..+++. +....+.+.|++.+.+...
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g---~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~ 159 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY---NCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETA 159 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh---CCeEEEECCCHHHHHHHHHcCCCEEEccCcccccccc
Confidence 467889999999998865432 1123334443333322 3565553 2345567889998854210
Q ss_pred ---CCC---HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEecccc
Q 010244 388 ---DMP---ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVY 431 (514)
Q Consensus 388 ---~~~---~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf 431 (514)
... ...+++......+.+....|++++.++.+.|+|.+.+|..+
T Consensus 160 ~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal 209 (219)
T cd04729 160 KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHH
Confidence 111 12333333445566666779999999999999999998655
No 414
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.12 E-value=8.6 Score=36.78 Aligned_cols=169 Identities=17% Similarity=0.128 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEc--CCCCHHHH----HHHHHHHHHHHhhcCceEEE--c--CcHHHHHhCCCCeEEeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLRE--KDADTRGF----LEAAKACLQICCVHGVPLLI--N--DRIDIALACDADGVHLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~--~~~~~~~~----~~~~~~~~~~~~~~~~~l~v--~--~~~~~a~~~ga~gvhl~~~ 387 (514)
+...+..+.+-+.|+.++.=-. +..++..+ .+-.+.+.+.|+++|++++. . .+++.+.+ .+|.+.++..
T Consensus 29 e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs~ 107 (250)
T PRK13397 29 DHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVIQVGAR 107 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEEEECcc
Confidence 4566677777778877663200 11111111 23466788889999998875 2 35677777 5999999987
Q ss_pred CCC-HHHHHhhcCCCcEEEEecC---CHHHHHHhh----hCCCcEEEecc-ccCCCCCCCCccCCHHHHHHHHHcCCCCE
Q 010244 388 DMP-ARTARALLGPDKIIGVSCK---TPEEAHQAW----IDGANYIGCGG-VYPTNTKANNLTVGLDGLKTVCLASKLPV 458 (514)
Q Consensus 388 ~~~-~~~~~~~~~~~~~ig~s~~---~~~e~~~a~----~~g~d~v~~~~-vf~t~~k~~~~~~g~~~l~~~~~~~~~pv 458 (514)
+.. ...++..-+.++.+.++.. |++|+..|. +.|..-+.+.+ -.-|-..+....+.+..+..+++.++.||
T Consensus 108 ~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPV 187 (250)
T PRK13397 108 NMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPI 187 (250)
T ss_pred cccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCe
Confidence 653 2233333334555555554 888877655 45664344433 22111112122467778888888789998
Q ss_pred EEE----CCCC---cccHHHHHHCCCCCCceEEEeeccc
Q 010244 459 VAI----GGIG---ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 459 ~a~----GGi~---~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+.- +|.. +.-......+||+ |+.+-.-+.
T Consensus 188 ivd~SHs~G~r~~v~~~a~AAvA~GAd---Gl~IE~H~~ 223 (250)
T PRK13397 188 IVDVSHSTGRRDLLLPAAKIAKAVGAN---GIMMEVHPD 223 (250)
T ss_pred EECCCCCCcccchHHHHHHHHHHhCCC---EEEEEecCC
Confidence 873 4442 1335667889999 998776554
No 415
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=92.08 E-value=5.5 Score=37.71 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCC--HHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecC
Q 010244 332 ATIIQLREKDAD--TRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCK 409 (514)
Q Consensus 332 v~~v~lr~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~ 409 (514)
++++.+...+.+ .++....++++-..|...++++++.- +.-+....+..+..+. .+.++
T Consensus 128 vK~Lvy~~~D~~e~neqk~a~ierigsec~aedi~f~lE~------------ltyd~~~~d~~eyak~-kp~kV------ 188 (306)
T COG3684 128 VKFLVYYRSDEDEINEQKLAYIERIGSECHAEDLPFFLEP------------LTYDPRIGDKEEYAKR-KPQKV------ 188 (306)
T ss_pred eEEEEEEcCCchHHhHHHHHHHHHHHHHhhhcCCceeEee------------eecCCCCCChHHHHhh-chHHH------
Confidence 666666666555 45556778999999999999887732 0000000001111110 11111
Q ss_pred CHHHHHHhhhCCCcEEEe-ccccCCCCCCCCccCCHHHHHHHHHcCCCC-EEEECCCCc----ccHHHHHHCCCCCCceE
Q 010244 410 TPEEAHQAWIDGANYIGC-GGVYPTNTKANNLTVGLDGLKTVCLASKLP-VVAIGGIGI----SNASDVMKIGVSNLKGV 483 (514)
Q Consensus 410 ~~~e~~~a~~~g~d~v~~-~~vf~t~~k~~~~~~g~~~l~~~~~~~~~p-v~a~GGi~~----~~~~~~~~~Ga~~~~gv 483 (514)
.+.++.-.+-|+|.+=+ -|+|-- +...--...+++....+++| +|..-|++. +.+.-..++||+ ||
T Consensus 189 -~~a~k~fsd~GadvlKvevPvyve----Ge~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAs---Gv 260 (306)
T COG3684 189 -IEAMKEFSDSGADVLKVEVPVYVE----GEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGAS---GV 260 (306)
T ss_pred -HHHHHHhccCCCceEEeecceecc----CccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCc---ee
Confidence 11233444669999844 344321 11111233455555556899 777899985 456778889999 99
Q ss_pred EEeecccC
Q 010244 484 AVVSALFD 491 (514)
Q Consensus 484 a~~~~i~~ 491 (514)
-.|++.|.
T Consensus 261 L~GRAtWa 268 (306)
T COG3684 261 LAGRATWA 268 (306)
T ss_pred Eechhhhh
Confidence 99999994
No 416
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.04 E-value=2.5 Score=38.99 Aligned_cols=91 Identities=20% Similarity=0.274 Sum_probs=60.2
Q ss_pred hCCCCeEEeCCCCCC----HHHHHhhcCCCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHH
Q 010244 376 ACDADGVHLGQSDMP----ARTARALLGPDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTV 450 (514)
Q Consensus 376 ~~ga~gvhl~~~~~~----~~~~~~~~~~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~ 450 (514)
+.|.+.+-++..... ...+++.++ +.++|+.+ -|++++++|.+.|++|+ +||- +..+.++..
T Consensus 36 ~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fi-VsP~-----------~~~ev~~~a 102 (211)
T COG0800 36 EGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFI-VSPG-----------LNPEVAKAA 102 (211)
T ss_pred HcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEE-ECCC-----------CCHHHHHHH
Confidence 345555555544332 334455554 88999766 49999999999999998 3342 234444443
Q ss_pred HHcCCCCEEEECCCCcccHHHHHHCCCCCCc
Q 010244 451 CLASKLPVVAIGGIGISNASDVMKIGVSNLK 481 (514)
Q Consensus 451 ~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~ 481 (514)
...++|+++ |=.|+..+...+++|++-+|
T Consensus 103 -~~~~ip~~P-G~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 103 -NRYGIPYIP-GVATPTEIMAALELGASALK 131 (211)
T ss_pred -HhCCCcccC-CCCCHHHHHHHHHcChhhee
Confidence 334677665 55689999999999998333
No 417
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=91.99 E-value=0.7 Score=43.31 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCEEEECCCCcc-----------cHHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 446 GLKTVCLASKLPVVAIGGIGIS-----------NASDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 446 ~l~~~~~~~~~pv~a~GGi~~~-----------~~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
.++.+++..+--++..+||.++ |+.++.++|++ .+.+||+|++++||.+.+++++
T Consensus 148 ~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad---~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 148 EAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAGAD---VIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred HHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcCCC---EEEEChhhcCCCCHHHHHHHhC
Confidence 3444444433236777788654 34889999999 9999999999999999887763
No 418
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=91.95 E-value=0.82 Score=42.06 Aligned_cols=70 Identities=20% Similarity=0.350 Sum_probs=49.5
Q ss_pred HHhhcCCCcEEEEec-CCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHH
Q 010244 394 ARALLGPDKIIGVSC-KTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDV 472 (514)
Q Consensus 394 ~~~~~~~~~~ig~s~-~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~ 472 (514)
+++.+ ++.++|+.+ .|.++++.|.++|++|+ ++|.| ..+.++..+ ..++|+++ |-.|+..+..+
T Consensus 53 l~~~~-p~~~vGAGTV~~~e~a~~a~~aGA~Fi-vSP~~-----------~~~v~~~~~-~~~i~~iP-G~~TptEi~~A 117 (196)
T PF01081_consen 53 LRKEF-PDLLVGAGTVLTAEQAEAAIAAGAQFI-VSPGF-----------DPEVIEYAR-EYGIPYIP-GVMTPTEIMQA 117 (196)
T ss_dssp HHHHH-TTSEEEEES--SHHHHHHHHHHT-SEE-EESS-------------HHHHHHHH-HHTSEEEE-EESSHHHHHHH
T ss_pred HHHHC-CCCeeEEEeccCHHHHHHHHHcCCCEE-ECCCC-----------CHHHHHHHH-HcCCcccC-CcCCHHHHHHH
Confidence 44444 689999765 69999999999999998 44543 245554444 34777765 66899999999
Q ss_pred HHCCCC
Q 010244 473 MKIGVS 478 (514)
Q Consensus 473 ~~~Ga~ 478 (514)
+++|++
T Consensus 118 ~~~G~~ 123 (196)
T PF01081_consen 118 LEAGAD 123 (196)
T ss_dssp HHTT-S
T ss_pred HHCCCC
Confidence 999999
No 419
>PRK15492 triosephosphate isomerase; Provisional
Probab=91.91 E-value=1 Score=43.43 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=76.7
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------H----HHHHhhcCCCcEEEEecCCHHHHHHh---------------hhCCCcE
Q 010244 370 RIDIALACDADGVHLGQSDMP------A----RTARALLGPDKIIGVSCKTPEEAHQA---------------WIDGANY 424 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~----~~~~~~~~~~~~ig~s~~~~~e~~~a---------------~~~g~d~ 424 (514)
.+....++|++++-++..... . .+++..+..++.+-+-+....|-+++ .....|.
T Consensus 86 Sa~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE~~e~r~~g~~~~v~~~Ql~~~l~~~~~~~ 165 (260)
T PRK15492 86 SPLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGETLEQKNYGISDEILRTQLKIGLHGINPDQ 165 (260)
T ss_pred CHHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHhcCCHhh
Confidence 456777788888866654321 1 14445555667666666554443333 2233343
Q ss_pred -----EEeccccCCCC-CCCCcc----CCHHHHHHH-HHcC-----CCCEEEECCCCcccHHHHHHCCCCCCceEEEeec
Q 010244 425 -----IGCGGVYPTNT-KANNLT----VGLDGLKTV-CLAS-----KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSA 488 (514)
Q Consensus 425 -----v~~~~vf~t~~-k~~~~~----~g~~~l~~~-~~~~-----~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~ 488 (514)
|..=|++.-.| ...+++ --.+.+++. .+.+ +++|+==|+++++|+.+++... +|||+-+|++
T Consensus 166 ~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~--diDG~LvG~a 243 (260)
T PRK15492 166 LAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQP--HIDGLFIGRS 243 (260)
T ss_pred cCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCC--CCCEEEeehh
Confidence 55567776333 111221 122345543 2222 5799999999999999998764 5669999998
Q ss_pred ccCCCCHHHHHHHH
Q 010244 489 LFDRECILPESKKL 502 (514)
Q Consensus 489 i~~~~~~~~~~~~~ 502 (514)
=++.++..+.++.+
T Consensus 244 Sl~~~~F~~Ii~~~ 257 (260)
T PRK15492 244 AWDADKFFAIIEGI 257 (260)
T ss_pred hcCHHHHHHHHHHH
Confidence 88655545544443
No 420
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.90 E-value=1.9 Score=41.12 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecC--------------------C----HHHHHHhhhCCCcEEE
Q 010244 371 IDIALACDADGVHLGQSDMPARTARALLGPDKIIGVSCK--------------------T----PEEAHQAWIDGANYIG 426 (514)
Q Consensus 371 ~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~--------------------~----~~e~~~a~~~g~d~v~ 426 (514)
+....++|++|||+.........++........+..-+. . .+.++...++|||.++
T Consensus 95 ~~~l~~aGa~gv~iED~~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~ 174 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGEWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIV 174 (240)
T ss_pred HHHHHHcCCcEEEEcCcHHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 344567899999997653222223333222222221111 1 2335556699999997
Q ss_pred eccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC
Q 010244 427 CGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG 465 (514)
Q Consensus 427 ~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~ 465 (514)
+-. ...+.++++.+.+++|++.+|.-.
T Consensus 175 ~e~------------~~~e~~~~i~~~~~~P~~~~gag~ 201 (240)
T cd06556 175 MEC------------VPVELAKQITEALAIPLAGIGAGS 201 (240)
T ss_pred EcC------------CCHHHHHHHHHhCCCCEEEEecCc
Confidence 732 147788899988999999987644
No 421
>PRK14567 triosephosphate isomerase; Provisional
Probab=91.89 E-value=1.4 Score=42.19 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=77.1
Q ss_pred cHHHHHhCCCCeEEeCCCCCC----------HHHHHhhcCCCcEEEEecCCHHHHHHh--------------h------h
Q 010244 370 RIDIALACDADGVHLGQSDMP----------ARTARALLGPDKIIGVSCKTPEEAHQA--------------W------I 419 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~----------~~~~~~~~~~~~~ig~s~~~~~e~~~a--------------~------~ 419 (514)
.++...++|++++-++..... ..++++.+..++.+.+-+....|-+++ . .
T Consensus 77 S~~mLkd~G~~yviiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pI~CiGEt~eere~g~~~~vv~~Ql~~~l~~i~~~~ 156 (253)
T PRK14567 77 SARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRQSGKLKQVLATQLSLILENLSVEQ 156 (253)
T ss_pred CHHHHHHcCCCEEEECcccccCccCCCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCCHHHHHHHHHHHHHccCCHHH
Confidence 456777788888866654321 124445555667666666543322211 1 1
Q ss_pred CCCcEEEeccccCCCCCCCCccCCH----HHHHHHHHc------CCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecc
Q 010244 420 DGANYIGCGGVYPTNTKANNLTVGL----DGLKTVCLA------SKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSAL 489 (514)
Q Consensus 420 ~g~d~v~~~~vf~t~~k~~~~~~g~----~~l~~~~~~------~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i 489 (514)
..-.+|..=|++.-.|...+++-.. ..++++... -+++|+-=|+++++|+.++++.+ ++||+-+|++-
T Consensus 157 ~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~--diDG~LVGgas 234 (253)
T PRK14567 157 LAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLP--DVDGGLIGGAS 234 (253)
T ss_pred hCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCC--CCCEEEeehhh
Confidence 1224566678877544332322112 223322211 15899999999999999999987 34499999999
Q ss_pred cCCCCHHHHHHH
Q 010244 490 FDRECILPESKK 501 (514)
Q Consensus 490 ~~~~~~~~~~~~ 501 (514)
++.+++.+.++.
T Consensus 235 L~~~~F~~Ii~~ 246 (253)
T PRK14567 235 LKAAEFNEIINQ 246 (253)
T ss_pred hcHHHHHHHHHH
Confidence 977766666654
No 422
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=91.81 E-value=0.82 Score=45.28 Aligned_cols=112 Identities=18% Similarity=0.253 Sum_probs=75.4
Q ss_pred CHHHHHHHHHhCC--CCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcC------cHHHHHhCCCCeEEeCCC---
Q 010244 319 SITDAVKAALEGG--ATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIND------RIDIALACDADGVHLGQS--- 387 (514)
Q Consensus 319 ~~~~~~~~~~~~G--v~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~------~~~~a~~~ga~gvhl~~~--- 387 (514)
+..+.+++++++| ++.|.+-.-+......++.++.+++. +....++.+ ....+.++|||++-++-.
T Consensus 107 ~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~---~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGS 183 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA---FPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGS 183 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh---CCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCC
Confidence 4567889999885 99999988888877777777777763 333444433 456777899999865511
Q ss_pred ------C-----CC---HHHHHhh-cC--CCcEEEEecCCHHHHHHhhhCCCcEEEeccccCC
Q 010244 388 ------D-----MP---ARTARAL-LG--PDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPT 433 (514)
Q Consensus 388 ------~-----~~---~~~~~~~-~~--~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t 433 (514)
- .. +.+.... .+ ...+.--.+.+.-++.+|+.+|||.|.+|..|..
T Consensus 184 icttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG 246 (343)
T TIGR01305 184 VCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG 246 (343)
T ss_pred cccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC
Confidence 0 00 1111111 12 2233334567888999999999999999988864
No 423
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.81 E-value=1.2 Score=41.83 Aligned_cols=107 Identities=24% Similarity=0.151 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCCEEEEEcCCC---CHHHHHHHHHHHHHHHhh-cCceEEEcC----cHHHHHhCCCCeEEeCCC------
Q 010244 322 DAVKAALEGGATIIQLREKDA---DTRGFLEAAKACLQICCV-HGVPLLIND----RIDIALACDADGVHLGQS------ 387 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~---~~~~~~~~~~~~~~~~~~-~~~~l~v~~----~~~~a~~~ga~gvhl~~~------ 387 (514)
+.++.+.+.|+++|.+-.... +.++..++++ .+++ .+.+++..- ....+.+.|+|.+.+...
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~----~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~ 154 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVK----RIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEET 154 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHH----HHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCC
Confidence 457889999999887744321 1133333333 3334 677776532 345667889998755311
Q ss_pred ----CCCH---HHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccC
Q 010244 388 ----DMPA---RTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYP 432 (514)
Q Consensus 388 ----~~~~---~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~ 432 (514)
.... ..+++......+.+-...|++++.++.+.|+|.+.+|..+-
T Consensus 155 ~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 155 KKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred CCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 1112 23333334455666677899999999999999999997553
No 424
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=2.6 Score=42.50 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCCCEEEEEcC---------CCCHHHHHHHHHHHHHHHhhcCceEEE--c------------CcHHHHHh
Q 010244 320 ITDAVKAALEGGATIIQLREK---------DADTRGFLEAAKACLQICCVHGVPLLI--N------------DRIDIALA 376 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~v--~------------~~~~~a~~ 376 (514)
-.+.+..+++.|++.|.+-.+ ..+.++ .++..++++.+|.++.+ | ..++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED----LAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH----HHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHH
Confidence 345678899999999988544 244444 34455678888886654 2 24566778
Q ss_pred CCCCeEEeCCCCCCHHHHHhhcCCCcEEE----EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHH
Q 010244 377 CDADGVHLGQSDMPARTARALLGPDKIIG----VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCL 452 (514)
Q Consensus 377 ~ga~gvhl~~~~~~~~~~~~~~~~~~~ig----~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~ 452 (514)
.|+|+|-+..... ...++ ...|+..+- ++++|.+.+.-..+.|+.-+++.. .+..+.++++++
T Consensus 91 ~GvDaviv~Dpg~-i~l~~-e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~r-----------Els~~ei~~i~~ 157 (347)
T COG0826 91 LGVDAVIVADPGL-IMLAR-ERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPR-----------ELSLEEIKEIKE 157 (347)
T ss_pred cCCCEEEEcCHHH-HHHHH-HhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCc-----------cCCHHHHHHHHH
Confidence 9999998855432 22333 223444433 455689999999999988886643 246788888887
Q ss_pred cC---CCCEEEECCC
Q 010244 453 AS---KLPVVAIGGI 464 (514)
Q Consensus 453 ~~---~~pv~a~GGi 464 (514)
.. ++-|++-|+.
T Consensus 158 ~~~~veiEvfVhGal 172 (347)
T COG0826 158 QTPDVEIEVFVHGAL 172 (347)
T ss_pred hCCCceEEEEEecch
Confidence 65 3348888775
No 425
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=91.68 E-value=0.51 Score=47.68 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=62.2
Q ss_pred EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC--CCEEEECCCC-cccHHHHHHCCCCCCce
Q 010244 406 VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK--LPVVAIGGIG-ISNASDVMKIGVSNLKG 482 (514)
Q Consensus 406 ~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~--~pv~a~GGi~-~~~~~~~~~~Ga~~~~g 482 (514)
..+.+++++..|...|+|.|.++---..+. +-.....+.|.++++..+ +||++.|||. ..++..++.+||+ +
T Consensus 224 kGV~~~~D~~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~---~ 298 (360)
T COG1304 224 KGILAPEDAAGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGAD---A 298 (360)
T ss_pred hCCCCHHHHHhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCc---h
Confidence 347789999999999999998864222111 112234677888887774 8999999996 7899999999999 9
Q ss_pred EEEeeccc
Q 010244 483 VAVVSALF 490 (514)
Q Consensus 483 va~~~~i~ 490 (514)
+.+++.+.
T Consensus 299 v~igrp~L 306 (360)
T COG1304 299 VGIGRPFL 306 (360)
T ss_pred hhhhHHHH
Confidence 99999887
No 426
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=91.57 E-value=0.79 Score=43.88 Aligned_cols=78 Identities=17% Similarity=0.006 Sum_probs=58.3
Q ss_pred CHHHH-HHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEEA-HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e~-~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|.+. ..-.+.|+.++ ++-....-.+ .+...+.++++.+.+.+|+..-|||. .+++..+++.|++ -|.+++
T Consensus 32 ~p~~~a~~~~~~g~~~l---hivDLd~a~g-~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~---~vvigT 104 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWI---HLVDLDAAFG-GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRA---RVNGGT 104 (243)
T ss_pred CHHHHHHHHHhCCCeEE---EEEECCCCCC-CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCC---EEEECc
Confidence 45444 44456788888 5555443322 22457889999988899999999996 7899999999999 999999
Q ss_pred cccCCCC
Q 010244 488 ALFDREC 494 (514)
Q Consensus 488 ~i~~~~~ 494 (514)
..+..++
T Consensus 105 ~a~~~p~ 111 (243)
T TIGR01919 105 AALENPW 111 (243)
T ss_pred hhhCCHH
Confidence 8886443
No 427
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=91.55 E-value=2.2 Score=40.40 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=67.2
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc----CcHHHHHhCCCCeEEeCC------CC
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN----DRIDIALACDADGVHLGQ------SD 388 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~----~~~~~a~~~ga~gvhl~~------~~ 388 (514)
...+.++.+.+.|++.|++-.. ...++ .+.+++.+.+++.. +....+.+.|+|++++.. ..
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~--~~~~~-------~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~ 138 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG--PPAEV-------VERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRG 138 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC--CCHHH-------HHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCC
Confidence 4567788899999999999654 22222 22233456666543 223456678999987722 11
Q ss_pred C-------CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccC
Q 010244 389 M-------PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYP 432 (514)
Q Consensus 389 ~-------~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~ 432 (514)
. ....+++......+.+-...+++++.++.+.|+|.|.+|.-+-
T Consensus 139 ~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 139 TFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred ccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 1 1223333334566666677788999999999999999986554
No 428
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=91.50 E-value=1.2 Score=44.89 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=82.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCc---eEEEcCcHHHHHhCCCCeEEeCCCCC------
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGV---PLLINDRIDIALACDADGVHLGQSDM------ 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~---~l~v~~~~~~a~~~ga~gvhl~~~~~------ 389 (514)
+-...++.+.++|++.|.|-..+.+-.-.++.++.+++-..+..+ .+......+..+.+|+||++++-...
T Consensus 251 ~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTq 330 (503)
T KOG2550|consen 251 DDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQ 330 (503)
T ss_pred chhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeec
Confidence 345667788899999999988887777777777777765544322 34444567778899999998865432
Q ss_pred --------------CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCC
Q 010244 390 --------------PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNT 435 (514)
Q Consensus 390 --------------~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~ 435 (514)
.+.+..++++.+.+-=-.|.++..+.+|..+||+.|..|..+...+
T Consensus 331 evma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtT 390 (503)
T KOG2550|consen 331 KVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTT 390 (503)
T ss_pred eeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeee
Confidence 2233344444444444456788899999999999999988886544
No 429
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=91.50 E-value=0.89 Score=48.64 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=57.7
Q ss_pred CCHHH-HHHhhhCCCcEEEeccccCCCC-C--CCCccCCHHHHHHHHHcCCCCEEEECCCCc------------ccHHHH
Q 010244 409 KTPEE-AHQAWIDGANYIGCGGVYPTNT-K--ANNLTVGLDGLKTVCLASKLPVVAIGGIGI------------SNASDV 472 (514)
Q Consensus 409 ~~~~e-~~~a~~~g~d~v~~~~vf~t~~-k--~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~------------~~~~~~ 472 (514)
.+|-| ++.-.+.|||.+ ++++-.. + +......++.++++++.+.+|+-.-|||.. +.+..+
T Consensus 267 gdPve~a~~y~~~Gadel---~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~ 343 (538)
T PLN02617 267 GKPVELAGQYYKDGADEV---AFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEY 343 (538)
T ss_pred CCHHHHHHHHHHcCCCEE---EEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHH
Confidence 37766 445557899999 4444221 1 111223478899999999999999999974 568999
Q ss_pred HHCCCCCCceEEEeecccCC
Q 010244 473 MKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~~~ 492 (514)
+++||+ -|.++++...+
T Consensus 344 l~~Gad---kV~i~s~Av~~ 360 (538)
T PLN02617 344 FRSGAD---KISIGSDAVYA 360 (538)
T ss_pred HHcCCC---EEEEChHHHhC
Confidence 999999 99999977753
No 430
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=91.42 E-value=0.37 Score=48.51 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=38.7
Q ss_pred HHHHHHHHHcC------CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCC
Q 010244 444 LDGLKTVCLAS------KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 444 ~~~l~~~~~~~------~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~ 492 (514)
.+.++++++.+ ++.|+|.|||+++++.++.+.|+- ||++++|+.+...
T Consensus 263 ~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~p-iD~~GVGt~l~~~ 316 (352)
T PRK07188 263 PELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVP-VDIYGVGSSLLKI 316 (352)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCC-ccEEecCcccccC
Confidence 46666666532 567999999999999999999954 5599999999864
No 431
>PRK07094 biotin synthase; Provisional
Probab=91.42 E-value=7 Score=39.08 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=48.8
Q ss_pred CcEEEEecCCHHH----HHHhhhCCCcEEEeccccCCCCCCC--CccCCHHH-HHHH---HHcC-CCCEEEECC---CCc
Q 010244 401 DKIIGVSCKTPEE----AHQAWIDGANYIGCGGVYPTNTKAN--NLTVGLDG-LKTV---CLAS-KLPVVAIGG---IGI 466 (514)
Q Consensus 401 ~~~ig~s~~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~--~~~~g~~~-l~~~---~~~~-~~pv~a~GG---i~~ 466 (514)
+.++|..-.|.++ +..+.+.++|++.++++.|.+..|- .+....+. ++.+ +..+ +..+-+.++ +.+
T Consensus 184 ~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~ 263 (323)
T PRK07094 184 GFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNP 263 (323)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCc
Confidence 4566655667666 4446689999999988887654442 12233332 2222 2223 333333344 456
Q ss_pred ccHHHHHHCCCCCCceEEEeeccc
Q 010244 467 SNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 467 ~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
+-....+.+||+ ++ +..++
T Consensus 264 ~~~~~~l~~Gan---~~--~~~~~ 282 (323)
T PRK07094 264 DGREKGLKAGAN---VV--MPNLT 282 (323)
T ss_pred hhHHHHHHcCCc---ee--cCCCC
Confidence 555788999999 55 34454
No 432
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=91.36 E-value=11 Score=37.91 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=94.5
Q ss_pred HHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEE
Q 010244 325 KAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGPDKII 404 (514)
Q Consensus 325 ~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~i 404 (514)
.++++.|.+.|.+--...+.++-.+.-+++.++|+.+|+.+--. +| |++..... ........
T Consensus 122 ~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaE--------LG----~Igg~Ed~---~~~~~~~~--- 183 (350)
T PRK09197 122 AAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIE--------LG----VTGGEEDG---VDNSHEDN--- 183 (350)
T ss_pred HhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------Ee----ccCCCcCC---cccccccc---
Confidence 33344449999998889998888999999999999998876431 11 12111100 00000000
Q ss_pred EEecCCHHHHHHhh-hCCC----cEEEe--ccccCCCCCCCCccCCHHHHHHHHHcC---------CCCEEEECCCC--c
Q 010244 405 GVSCKTPEEAHQAW-IDGA----NYIGC--GGVYPTNTKANNLTVGLDGLKTVCLAS---------KLPVVAIGGIG--I 466 (514)
Q Consensus 405 g~s~~~~~e~~~a~-~~g~----d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~---------~~pv~a~GGi~--~ 466 (514)
...-.+|+|+.+-. +.|+ |.+.+ |.+.-. .|++.+.+.++.|+++.+.+ ++|++.=||-. .
T Consensus 184 ~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~-Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipd 262 (350)
T PRK09197 184 SKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGV-YKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTL 262 (350)
T ss_pred ccccCCHHHHHHHHHHhCCCCcceEEeeecccccCC-cCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCH
Confidence 01134789887755 4576 87654 433322 12223458899999999887 79999999764 6
Q ss_pred ccHHHHHHCCCCCCceEEEeeccc
Q 010244 467 SNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 467 ~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
++++++.+.|.. -|=+.+.+.
T Consensus 263 e~i~~ai~~GI~---KINi~T~l~ 283 (350)
T PRK09197 263 EEIREAVSYGVV---KMNIDTDTQ 283 (350)
T ss_pred HHHHHHHHCCCe---eEEeCcHHH
Confidence 889999999999 898887765
No 433
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=91.31 E-value=9 Score=38.99 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHhCCCCEEEEEcC-----CCCHHHHHHHHHHHHHHH-hhcCc--eEEEc---------CcHHHHHhCCC
Q 010244 317 GRSITDAVKAALEGGATIIQLREK-----DADTRGFLEAAKACLQIC-CVHGV--PLLIN---------DRIDIALACDA 379 (514)
Q Consensus 317 ~~~~~~~~~~~~~~Gv~~v~lr~~-----~~~~~~~~~~~~~~~~~~-~~~~~--~l~v~---------~~~~~a~~~ga 379 (514)
++++.+.+.+++.+|+++|.--+. ..+.++..+...+..+.+ ++.|- ....| ++.+.+.++|+
T Consensus 140 ~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga 219 (364)
T cd08210 140 AAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGPPTQLLERARFAKEAGA 219 (364)
T ss_pred HHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCCHHHHHHHHHHHHHcCC
Confidence 467888899999999999955433 233444444444443333 33333 33333 24567788999
Q ss_pred CeEEeCCCCCCH---HHHHhhcCCC-cEEEEecC---------C---HH----HHHHhhhCCCcEEEeccccCCCCCCCC
Q 010244 380 DGVHLGQSDMPA---RTARALLGPD-KIIGVSCK---------T---PE----EAHQAWIDGANYIGCGGVYPTNTKANN 439 (514)
Q Consensus 380 ~gvhl~~~~~~~---~~~~~~~~~~-~~ig~s~~---------~---~~----e~~~a~~~g~d~v~~~~vf~t~~k~~~ 439 (514)
+++.+.....-. ..+++. .. ..+- .| + .+ -.+-+...|+|.+.++...- ..
T Consensus 220 ~~vMv~~~~~G~~~~~~l~~~--~~~l~i~--aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~g-----~~ 290 (364)
T cd08210 220 GGVLIAPGLTGLDTFRELAED--FDFLPIL--AHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYGG-----RF 290 (364)
T ss_pred CEEEeecccchHHHHHHHHhc--CCCcEEE--EccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCcC-----Cc
Confidence 999875543221 122221 22 2221 22 1 11 12224458999986543321 11
Q ss_pred ccCCHHHHHHHHHcCC------CC--EEEECCCCcccHHHHHH-CCCCCCceEEEeecccCCCC-HHHHHHHHHHH
Q 010244 440 LTVGLDGLKTVCLASK------LP--VVAIGGIGISNASDVMK-IGVSNLKGVAVVSALFDREC-ILPESKKLHAV 505 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~~------~p--v~a~GGi~~~~~~~~~~-~Ga~~~~gva~~~~i~~~~~-~~~~~~~~~~~ 505 (514)
....+.+.++.+.+. .+ =++.||+++..+.++++ .|-+ =.+.+|++++.+.+ +.+-+++++++
T Consensus 291 -~~~~e~~~~ia~~~~~~~~~iK~~~Pv~sgG~~~~~v~~l~~~~G~D--vil~aGGgi~gHp~g~~ag~~a~rqa 363 (364)
T cd08210 291 -GFSREECQAIADACRRPMGGLKPILPAPGGGMSVERAPEMVELYGPD--VMLLIGGSLLRAGDDLTENTRAFVEA 363 (364)
T ss_pred -cCCHHHHHHHHHHhcCCccccCCCcCcCCCCcCHHHHHHHHHHcCCc--EEEEccccccCCCCChHHHHHHHHhh
Confidence 134555555554321 12 23468999999998887 4644 13455778886655 88888888875
No 434
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.31 E-value=1.6 Score=37.46 Aligned_cols=86 Identities=23% Similarity=0.158 Sum_probs=52.7
Q ss_pred CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc-C-CCCEEEECCCCcccHHHHHHCCCCCCceEEEe
Q 010244 410 TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA-S-KLPVVAIGGIGISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 410 ~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~-~-~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~ 486 (514)
++++ +..|.+.++|+|++|..-.+ + ...-.+.++.+++. . +++|++-|.+..++..++.++|.+ ++
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~-~----~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd---~~--- 109 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGG-H----LTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA---EI--- 109 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhh-h----HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC---EE---
Confidence 5666 46677899999999875532 1 11112334444443 2 456666444666779999999999 54
Q ss_pred ecccCCCCHHHHHHHHHHHHHH
Q 010244 487 SALFDRECILPESKKLHAVLMD 508 (514)
Q Consensus 487 ~~i~~~~~~~~~~~~~~~~~~~ 508 (514)
|..-.++.+.++.+.+.+.+
T Consensus 110 --~~~gt~~~~i~~~l~~~~~~ 129 (132)
T TIGR00640 110 --FGPGTPIPESAIFLLKKLRK 129 (132)
T ss_pred --ECCCCCHHHHHHHHHHHHHH
Confidence 22334677777777765543
No 435
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.28 E-value=0.72 Score=46.93 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCCCCCCceEEEee
Q 010244 411 PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 411 ~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
.+-+..+.+.|+|++.+..=...+.+.. +...+..+.++++..++||++ |++ +.+.+..++++||+ +|.++.
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~-~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aGAD---~V~VG~ 216 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVS-KEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLMRTGAA---GVLVGI 216 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccC-CcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCC---EEEECC
Confidence 4557777899999997743111111111 111466677777778999999 666 57889999999999 997763
No 436
>KOG4202 consensus Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=91.25 E-value=1.9 Score=38.23 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=68.4
Q ss_pred eEEEcCcHH----HHHhCCCCeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHHHHHhhhCC--CcEEEeccccCCCCCC
Q 010244 364 PLLINDRID----IALACDADGVHLGQSDMPARTARALLGPDKIIGVSCKTPEEAHQAWIDG--ANYIGCGGVYPTNTKA 437 (514)
Q Consensus 364 ~l~v~~~~~----~a~~~ga~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g--~d~v~~~~vf~t~~k~ 437 (514)
-+++|+..+ ++.+.+.|-|.|.... +.....+.- ...+. +-..+..|..+++..- -|++ .+.+.+..
T Consensus 97 GVF~nqp~e~il~~~~~~~ldiVQLHG~e-s~~~~~~L~-rpvik-vfpln~n~~~~~~~~vP~~d~~----lvdsetGG 169 (227)
T KOG4202|consen 97 GVFVNQPEETILRAADSSDLDIVQLHGNE-SRAAFSRLV-RPVIK-VFPLNANEDGKLLNEVPEEDWI----LVDSETGG 169 (227)
T ss_pred EEeecCCHHHHHHHHhhcCCceEEecCcc-cHHHHHHhC-CceEE-EEecCchhhhHhhccCCchhhe----eeccccCc
Confidence 355665432 4456677777774443 333333332 22222 2233333433333221 3433 34444433
Q ss_pred CCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHH-CCCCCCceEEEeeccc
Q 010244 438 NNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMK-IGVSNLKGVAVVSALF 490 (514)
Q Consensus 438 ~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~-~Ga~~~~gva~~~~i~ 490 (514)
......|+.++.+.-...-|.+..||+||+|+.+++. .+.+ ||=+.|.+.
T Consensus 170 ~G~~~dW~~~s~~~vr~~~~~~LAGGltP~NV~dAlsi~~p~---gvDVSsGve 220 (227)
T KOG4202|consen 170 SGKGFDWAQFSLPSVRSRNGWLLAGGLTPTNVSDALSILQPD---GVDVSSGVE 220 (227)
T ss_pred CcCccCHHHhcCccccccCceEEecCCCccchHHhhhhcCCc---eeeccCcee
Confidence 3445678877766655567899999999999999887 6788 998988876
No 437
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=91.22 E-value=0.14 Score=48.63 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=56.5
Q ss_pred cCCHHHHHHhh-hCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEE
Q 010244 408 CKTPEEAHQAW-IDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 408 ~~~~~e~~~a~-~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~ 485 (514)
..+|.++.+.+ +.|+|.+ ++.+-+.-....+..++.++++++.+.+|+..-|||. .+++..+++.|++ -|.+
T Consensus 28 ~~dP~~~a~~~~~~g~~~l---~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~---~Vvi 101 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADEL---HIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGAD---RVVI 101 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEE---EEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-S---EEEE
T ss_pred CcCHHHHHHHHHHcCCCEE---EEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCC---EEEe
Confidence 34677655544 7899999 4443211001122346788999988899999999997 7889999999999 9999
Q ss_pred eecccCCCC
Q 010244 486 VSALFDREC 494 (514)
Q Consensus 486 ~~~i~~~~~ 494 (514)
++..+...+
T Consensus 102 gt~~~~~~~ 110 (229)
T PF00977_consen 102 GTEALEDPE 110 (229)
T ss_dssp SHHHHHCCH
T ss_pred ChHHhhchh
Confidence 998886543
No 438
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=91.17 E-value=12 Score=36.39 Aligned_cols=129 Identities=19% Similarity=0.301 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhcCceEEEc------------CcHHHHHhCCCCeEEeCCCCCC-----------------HHHHH---
Q 010244 348 LEAAKACLQICCVHGVPLLIN------------DRIDIALACDADGVHLGQSDMP-----------------ARTAR--- 395 (514)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~v~------------~~~~~a~~~ga~gvhl~~~~~~-----------------~~~~~--- 395 (514)
.+.+..++.++...+.+|++. ..+..+.++|+-|+|+.....+ ...++
T Consensus 64 ~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~ 143 (289)
T COG2513 64 DEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAV 143 (289)
T ss_pred HHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHH
Confidence 344445555566667888873 2366777899999999654332 01111
Q ss_pred hhc-CCCcEEEEecC-----CHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCE----EEE
Q 010244 396 ALL-GPDKIIGVSCK-----TPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPV----VAI 461 (514)
Q Consensus 396 ~~~-~~~~~ig~s~~-----~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv----~a~ 461 (514)
... .++..|.+-+. ..++ +....+.|||.| |+ ......+.++++++.+++|+ ..-
T Consensus 144 ~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~i-----f~------~al~~~e~i~~f~~av~~pl~~N~t~~ 212 (289)
T COG2513 144 EARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAI-----FP------EALTDLEEIRAFAEAVPVPLPANITEF 212 (289)
T ss_pred HhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEE-----cc------ccCCCHHHHHHHHHhcCCCeeeEeecc
Confidence 111 23444443221 2333 445569999999 44 11124788999998887443 233
Q ss_pred CCCCcccHHHHHHCCCCCCceEEEeeccc
Q 010244 462 GGIGISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 462 GGi~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
|+-..-++.++.++|+. -|..+...+
T Consensus 213 g~tp~~~~~~L~~~Gv~---~V~~~~~~~ 238 (289)
T COG2513 213 GKTPLLTVAELAELGVK---RVSYGLTAF 238 (289)
T ss_pred CCCCCcCHHHHHhcCce---EEEECcHHH
Confidence 44445678999999999 887777666
No 439
>PLN02591 tryptophan synthase
Probab=91.16 E-value=2.8 Score=40.24 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEE--Ec-----CcHHHHHhCCCCeEEeCC-----
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLL--IN-----DRIDIALACDADGVHLGQ----- 386 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~-----~~~~~a~~~ga~gvhl~~----- 386 (514)
...+.++.+.+.|++.+.+.+ +..++. ..+.+.|+++|..++ +. ++.+...+..-+++++-+
T Consensus 94 G~~~F~~~~~~aGv~GviipD--LP~ee~----~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPD--LPLEET----EALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCC--CCHHHH----HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 345556666677777666643 333322 234455556665332 21 112333333333444311
Q ss_pred ---CCCC------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEecccc
Q 010244 387 ---SDMP------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVY 431 (514)
Q Consensus 387 ---~~~~------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf 431 (514)
...+ ...+|+.......+|..++|++++.++.+.|+|-+++|..+
T Consensus 168 G~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 168 GARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred CCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 0111 23455555668899999999999999999999999999877
No 440
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=91.10 E-value=2.7 Score=39.00 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=73.4
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCC
Q 010244 370 RIDIALACDADGVHLGQSDMP------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVG 443 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g 443 (514)
.++...++|++++-++..... ..+++..+..++.+-+-+..+.+-.......-++|..=|++.-.|...+++-.
T Consensus 73 S~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~v~~q~~~~~~~~~vIAYEPvWAIGtG~~as~~~ 152 (205)
T TIGR00419 73 SAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNNVLTTAAAAALEPDVVAVEPPELIGTGIPVSPAQ 152 (205)
T ss_pred CHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHHHHHHHHhhhhcCeEEEECCHHHhCCCCCCCHHH
Confidence 466677778877766554322 22444555667777666655444333333455777777777654433333333
Q ss_pred HHHHHHHHH----cC-CCCEEEECCCCcccHHHHHH-CCCCCCceEEEeecccCC
Q 010244 444 LDGLKTVCL----AS-KLPVVAIGGIGISNASDVMK-IGVSNLKGVAVVSALFDR 492 (514)
Q Consensus 444 ~~~l~~~~~----~~-~~pv~a~GGi~~~~~~~~~~-~Ga~~~~gva~~~~i~~~ 492 (514)
.+.+....+ .. +++|+-=|+++++|+.+++. .+++ |+-+||+.+++
T Consensus 153 ~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iD---G~LvG~Asl~a 204 (205)
T TIGR00419 153 PEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAE---GVLLASGSLKA 204 (205)
T ss_pred HHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCC---EEEEeeeeecC
Confidence 332222222 12 58999999999999998766 5566 99999998754
No 441
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=91.04 E-value=9.8 Score=34.91 Aligned_cols=105 Identities=22% Similarity=0.151 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCC--HHHHHHHHHHHHHHHhhcCceEEEcC-----cHHHHHhCCCCeEEeCC------
Q 010244 320 ITDAVKAALEGGATIIQLREKDAD--TRGFLEAAKACLQICCVHGVPLLIND-----RIDIALACDADGVHLGQ------ 386 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~-----~~~~a~~~ga~gvhl~~------ 386 (514)
..+-++++.+.|+++|-+--.... ...+.+++.+ .+..|. ++..| +.-.|.++|+|+|-.+-
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~----~k~~~~-l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~ 161 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR----IKYPGQ-LAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGY 161 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH----hhcCCc-EEEeccCCHHHHHHHHHcCCcEEecccccccCC
Confidence 456689999999999988332221 1133344333 223333 44333 33457789999873221
Q ss_pred ----CCCCHHHHHhhcCCCcEEEE--ecCCHHHHHHhhhCCCcEEEecc
Q 010244 387 ----SDMPARTARALLGPDKIIGV--SCKTPEEAHQAWIDGANYIGCGG 429 (514)
Q Consensus 387 ----~~~~~~~~~~~~~~~~~ig~--s~~~~~e~~~a~~~g~d~v~~~~ 429 (514)
.+++....+.....+..+.+ ..|||+.+.++.+.|++.|.+|.
T Consensus 162 ~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 162 TEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred CCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhCCeEEEECc
Confidence 12334455555545555443 45799999999999999999886
No 442
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=90.95 E-value=13 Score=37.35 Aligned_cols=146 Identities=16% Similarity=0.098 Sum_probs=96.2
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCC-CCCCHHHHHhhcCC
Q 010244 322 DAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQ-SDMPARTARALLGP 400 (514)
Q Consensus 322 ~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~-~~~~~~~~~~~~~~ 400 (514)
+.+.++++.|.+.|.+--...+.++-.+..+++.++++.+|+.|-.. +| |++. .+...... . .
T Consensus 114 ~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaE--------lG----~igg~ed~~~~~~---~-~ 177 (345)
T cd00946 114 EYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEME--------IG----ITGGEEDGVDNSG---V-D 177 (345)
T ss_pred HHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------ec----ccCCcccCccccc---c-c
Confidence 34455668899999999889999999999999999999988866431 11 1211 11100000 0 0
Q ss_pred CcEEEEecCCHHHHHHhhhC-----CCcEEEe--ccccCCCCCCCCccCCHHHHHHH----HHcC------CCCEEEECC
Q 010244 401 DKIIGVSCKTPEEAHQAWID-----GANYIGC--GGVYPTNTKANNLTVGLDGLKTV----CLAS------KLPVVAIGG 463 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~~~-----g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~----~~~~------~~pv~a~GG 463 (514)
. ..--.+|+|+.+-.+. |+|.+.+ |.+.-.. |++.+.+.++.|+++ ++.. ++|++-=||
T Consensus 178 ~---~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y-~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGg 253 (345)
T cd00946 178 N---AELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVY-KPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHGG 253 (345)
T ss_pred c---cccCCCHHHHHHHHHHhccCCCceeeeeeccccccCC-CCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeCC
Confidence 0 0002479998876653 8897654 4443221 212345789999998 4443 689888887
Q ss_pred CC--cccHHHHHHCCCCCCceEEEeeccc
Q 010244 464 IG--ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 464 i~--~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
-. .+++..+.+.|.. -|=+.+.+.
T Consensus 254 SG~~~e~i~kai~~GI~---KiNi~T~l~ 279 (345)
T cd00946 254 SGSTKEEIREAISYGVV---KMNIDTDTQ 279 (345)
T ss_pred CCCCHHHHHHHHHcCCe---eEEeCcHHH
Confidence 64 6889999999999 888887764
No 443
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.88 E-value=3.6 Score=39.72 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCC------HHHHHHHHHHHHHHHhhcCceEE--E---cCcHHHHHhCCCCeEEeCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDAD------TRGFLEAAKACLQICCVHGVPLL--I---NDRIDIALACDADGVHLGQ 386 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~------~~~~~~~~~~~~~~~~~~~~~l~--v---~~~~~~a~~~ga~gvhl~~ 386 (514)
++..++++.+.+.|++.|++-..... .. ..+.++.+.+... +.++. + .+.++.+.+.|++.+++..
T Consensus 19 e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~-~~~~i~~l~~~~~--~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~ 95 (265)
T cd03174 19 EDKLEIAEALDEAGVDSIEVGSGASPKAVPQMED-DWEVLRAIRKLVP--NVKLQALVRNREKGIERALEAGVDEVRIFD 95 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEeccCcCccccccCCC-HHHHHHHHHhccC--CcEEEEEccCchhhHHHHHhCCcCEEEEEE
Confidence 56778888899999999999777654 22 2333444443221 34442 2 3357888999999988865
Q ss_pred CCCC--------------H----HHHHhhcCCCcEEEEec-------CCHHH----HHHhhhCCCcEEEeccccCCCCCC
Q 010244 387 SDMP--------------A----RTARALLGPDKIIGVSC-------KTPEE----AHQAWIDGANYIGCGGVYPTNTKA 437 (514)
Q Consensus 387 ~~~~--------------~----~~~~~~~~~~~~ig~s~-------~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~ 437 (514)
...+ . ..++.....+..+..+. +++++ ++.+.+.|+|.|.+.. |..
T Consensus 96 ~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~D---t~G-- 170 (265)
T cd03174 96 SASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKD---TVG-- 170 (265)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEech---hcC--
Confidence 3321 1 11112222333332222 55444 5567789999996543 211
Q ss_pred CCccCCH-HHHHHHHHcCC-CCEEEEC----CCCcccHHHHHHCCCC
Q 010244 438 NNLTVGL-DGLKTVCLASK-LPVVAIG----GIGISNASDVMKIGVS 478 (514)
Q Consensus 438 ~~~~~g~-~~l~~~~~~~~-~pv~a~G----Gi~~~~~~~~~~~Ga~ 478 (514)
...|..+ +.++.+++.++ +|+-.=+ |....|.-.++++|++
T Consensus 171 ~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~ 217 (265)
T cd03174 171 LATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGAD 217 (265)
T ss_pred CcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCC
Confidence 1222233 55667776665 7777767 6677888999999998
No 444
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.88 E-value=8 Score=35.36 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHhCCCCeEEeCCCCCCHH----HHHhhcCCCcEEEE-ecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHH
Q 010244 373 IALACDADGVHLGQSDMPAR----TARALLGPDKIIGV-SCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGL 447 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~~~~----~~~~~~~~~~~ig~-s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l 447 (514)
.+.+.|+..+.+...+.... .+++.+ +...+|. ++.+.+++..|.+.|+|++..++ .+.+.+
T Consensus 32 ~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~------------~~~~~~ 98 (187)
T PRK07455 32 AVAAGGMRLIEITWNSDQPAELISQLREKL-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH------------VDPELI 98 (187)
T ss_pred HHHHCCCCEEEEeCCCCCHHHHHHHHHHhC-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC------------CCHHHH
Confidence 44455666666655544322 233333 3444553 55688999999999999995554 344443
Q ss_pred HHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEE
Q 010244 448 KTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 448 ~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~ 485 (514)
+ ++...+++. ..|--|++.+.+..+.|++ -+.+
T Consensus 99 ~-~~~~~~~~~-i~G~~t~~e~~~A~~~Gad---yv~~ 131 (187)
T PRK07455 99 E-AAVAQDIPI-IPGALTPTEIVTAWQAGAS---CVKV 131 (187)
T ss_pred H-HHHHcCCCE-EcCcCCHHHHHHHHHCCCC---EEEE
Confidence 3 344445664 4675578889999999999 8876
No 445
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=90.75 E-value=2.4 Score=39.53 Aligned_cols=124 Identities=17% Similarity=0.290 Sum_probs=76.3
Q ss_pred HHHHHhCCCCEEEE-----EcCCCCHHHHHHHHHHHHHHHhhc-CceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 324 VKAALEGGATIIQL-----REKDADTRGFLEAAKACLQICCVH-GVPLLINDRIDIALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 324 ~~~~~~~Gv~~v~l-----r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
.+.+++.|++-|=+ ..++.+.+...+.++.+.+.|... -+++|+.. ..+...+.+
T Consensus 83 a~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt-----------------~~Lt~ee~~-- 143 (228)
T COG0274 83 AREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILET-----------------GLLTDEEKR-- 143 (228)
T ss_pred HHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEec-----------------cccCHHHHH--
Confidence 44566777554433 234566666666666676666553 33444432 111111111
Q ss_pred cCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcC--CCCEEEECCCC-cccHHHHHH
Q 010244 398 LGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLAS--KLPVVAIGGIG-ISNASDVMK 474 (514)
Q Consensus 398 ~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~--~~pv~a~GGi~-~~~~~~~~~ 474 (514)
.-...+.+.|+|||=.|.-|. ..+..++.++-+++.+ .+.|=|.|||. .+++..+++
T Consensus 144 --------------~A~~i~~~aGAdFVKTSTGf~------~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ 203 (228)
T COG0274 144 --------------KACEIAIEAGADFVKTSTGFS------AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIE 203 (228)
T ss_pred --------------HHHHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHH
Confidence 124556789999996665444 1223466666666665 58899999996 899999999
Q ss_pred CCCCCCceEEEeecc
Q 010244 475 IGVSNLKGVAVVSAL 489 (514)
Q Consensus 475 ~Ga~~~~gva~~~~i 489 (514)
+|+. -++..|.+
T Consensus 204 aga~---RiGtSs~v 215 (228)
T COG0274 204 AGAT---RIGTSSGV 215 (228)
T ss_pred HhHH---HhccccHH
Confidence 9999 77777643
No 446
>PLN02429 triosephosphate isomerase
Probab=90.39 E-value=4.1 Score=40.25 Aligned_cols=129 Identities=12% Similarity=0.032 Sum_probs=78.2
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------HH----HHHhhcCCCcEEEEecCCHH--------------HHHHhhhCCCc--
Q 010244 370 RIDIALACDADGVHLGQSDMP------AR----TARALLGPDKIIGVSCKTPE--------------EAHQAWIDGAN-- 423 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~~----~~~~~~~~~~~ig~s~~~~~--------------e~~~a~~~g~d-- 423 (514)
.++...++|+.++-++..... .. ++...+..++.+.+-+.... ++....+.=.|
T Consensus 139 Sa~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~ 218 (315)
T PLN02429 139 SVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWD 218 (315)
T ss_pred CHHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCccc
Confidence 467788899999877664321 11 22235556676666565432 34333322124
Q ss_pred --EEEeccccCCCCCCCCccCCHH----HHHHHHHc-------CCCCEEEECCCCcccHHHHHH-CCCCCCceEEEeecc
Q 010244 424 --YIGCGGVYPTNTKANNLTVGLD----GLKTVCLA-------SKLPVVAIGGIGISNASDVMK-IGVSNLKGVAVVSAL 489 (514)
Q Consensus 424 --~v~~~~vf~t~~k~~~~~~g~~----~l~~~~~~-------~~~pv~a~GGi~~~~~~~~~~-~Ga~~~~gva~~~~i 489 (514)
+|..=|++.-.|...+++-..+ .++++... -+++|+--|+++++|+.++.. .++| |+-+|++.
T Consensus 219 ~ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diD---G~LVGgAS 295 (315)
T PLN02429 219 NIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDID---GFLVGGAS 295 (315)
T ss_pred ceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCC---EEEeecce
Confidence 5656677764443333332332 33332211 157999999999999988775 5566 99999999
Q ss_pred cCCCCHHHHHHH
Q 010244 490 FDRECILPESKK 501 (514)
Q Consensus 490 ~~~~~~~~~~~~ 501 (514)
++.+++.+.++.
T Consensus 296 L~~~~F~~Ii~~ 307 (315)
T PLN02429 296 LKGPEFATIVNS 307 (315)
T ss_pred ecHHHHHHHHHH
Confidence 987777666654
No 447
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.35 E-value=0.93 Score=48.19 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=69.2
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcC--ceEEE-----cCcHHHHHhCCCCeEEeCCCCC--
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHG--VPLLI-----NDRIDIALACDADGVHLGQSDM-- 389 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~--~~l~v-----~~~~~~a~~~ga~gvhl~~~~~-- 389 (514)
+..+.+++++++|++.+++...+.......+.++++++ .++ +.++. .+..+.+.++|||++-++...-
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~---~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~ 318 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE---KYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSI 318 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH---hCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcC
Confidence 46788999999999999996443333333444555544 443 33332 2356678899999985532111
Q ss_pred -----------C----HHHHHhh-------cC--CCcEEEEecCCHHHHHHhhhCCCcEEEeccccCC
Q 010244 390 -----------P----ARTARAL-------LG--PDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPT 433 (514)
Q Consensus 390 -----------~----~~~~~~~-------~~--~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t 433 (514)
+ ..+..+. .+ ...+.--.+.+..++.+|..+|||.|.+|-.|..
T Consensus 319 c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag 386 (502)
T PRK07107 319 CITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFAR 386 (502)
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhc
Confidence 0 1111111 12 1223333456888999999999999999998864
No 448
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.32 E-value=1.3 Score=42.12 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCHHHHHHhh-hCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEe
Q 010244 409 KTPEEAHQAW-IDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 409 ~~~~e~~~a~-~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~ 486 (514)
.+|.++.+.+ +.|+|.+ ++.+-+.-.+ .....+.++++.+....|+..-|||. .+++..+++.|++ -|.++
T Consensus 30 ~dP~~~a~~~~~~ga~~l---hivDLd~a~~-~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~---kvvig 102 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRI---HVVDLDAAEG-VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVN---ALVFS 102 (232)
T ss_pred CCHHHHHHHHHHCCCCEE---EEEECCCcCC-CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCC---EEEEC
Confidence 3777755555 6899999 5555332211 22346888888874335999999997 6999999999999 99999
Q ss_pred ecccCCC
Q 010244 487 SALFDRE 493 (514)
Q Consensus 487 ~~i~~~~ 493 (514)
+..+...
T Consensus 103 t~a~~~p 109 (232)
T PRK13586 103 TIVFTNF 109 (232)
T ss_pred chhhCCH
Confidence 9887543
No 449
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=90.29 E-value=4 Score=38.61 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=71.3
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCC----HHHHHHHHHHHHHHHhhcCceEEEc-----------C----cHH---HH-H
Q 010244 319 SITDAVKAALEGGATIIQLREKDAD----TRGFLEAAKACLQICCVHGVPLLIN-----------D----RID---IA-L 375 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~----~~~~~~~~~~~~~~~~~~~~~l~v~-----------~----~~~---~a-~ 375 (514)
+....++.+ ..|+++|++|..-.. ........+.+..+. .+.++++. . +.+ .+ .
T Consensus 13 ~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~--~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 89 (228)
T TIGR01093 13 EALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLR--PDKPLIFTIRTISEGGKFPGNEEEYLEELKRAAD 89 (228)
T ss_pred HHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhc--CCCcEEEEECChhhCCCCCCCHHHHHHHHHHHHH
Confidence 344555555 789999999998652 333334444444433 24566651 1 112 22 4
Q ss_pred hCCCCeEEeCCCCCC--HHHH-HhhcCCCcEEEEecCC----H--H----HHHHhhhCCCcEEEeccccCCCCCCCCccC
Q 010244 376 ACDADGVHLGQSDMP--ARTA-RALLGPDKIIGVSCKT----P--E----EAHQAWIDGANYIGCGGVYPTNTKANNLTV 442 (514)
Q Consensus 376 ~~ga~gvhl~~~~~~--~~~~-~~~~~~~~~ig~s~~~----~--~----e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~ 442 (514)
..+++.|-+.-.... ...+ ......+..+..|.|+ + + -..++.+.|+|++ ++--+...+. ..+
T Consensus 90 ~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv---Kia~~a~~~~-D~~ 165 (228)
T TIGR01093 90 SPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIV---KIAVMANSKE-DVL 165 (228)
T ss_pred hCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEE---EEEeccCCHH-HHH
Confidence 567888877543221 1111 2112345666778984 2 2 3566778999999 5443322221 111
Q ss_pred CH-HHHHHHHHcCCCCEEEEC
Q 010244 443 GL-DGLKTVCLASKLPVVAIG 462 (514)
Q Consensus 443 g~-~~l~~~~~~~~~pv~a~G 462 (514)
.+ ....++.+..++|+++++
T Consensus 166 ~ll~~~~~~~~~~~~p~i~~~ 186 (228)
T TIGR01093 166 TLLEITNKVDEHADVPLITMS 186 (228)
T ss_pred HHHHHHHHHHhcCCCCEEEEe
Confidence 11 222222222367888776
No 450
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=90.27 E-value=2.8 Score=39.63 Aligned_cols=145 Identities=12% Similarity=0.106 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCH---HHHHHHHHHHHHHHhhcCceEEEc----Cc---HHHHHhCCCCeEEeCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADT---RGFLEAAKACLQICCVHGVPLLIN----DR---IDIALACDADGVHLGQS 387 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~----~~---~~~a~~~ga~gvhl~~~ 387 (514)
+++...++.+...|++++++|...... .+..+..+.+ +..+.++++. ++ ...+.+.+++.|-+.-.
T Consensus 33 ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l----~~~~~p~I~T~R~~~~~~~l~~a~~~~~d~vDIEl~ 108 (229)
T PRK01261 33 KEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISAL----NEMDIDYIFTYRGVDARKYYETAIDKMPPAVDLDIN 108 (229)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHH----hhcCCCEEEEEcCCCHHHHHHHHHhhCCCEEEEEcc
Confidence 445555666777899999999986643 2233333322 2335566652 22 23444556787766543
Q ss_pred CCCHHHHHhhcCCCcEEEEecCCH--HHH----HHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEE
Q 010244 388 DMPARTARALLGPDKIIGVSCKTP--EEA----HQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAI 461 (514)
Q Consensus 388 ~~~~~~~~~~~~~~~~ig~s~~~~--~e~----~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~ 461 (514)
... ..+ ....+..+.+|.||+ +|+ .+..+.|+|++ ++--+.....--...+..+....+..+.|++++
T Consensus 109 ~~~--~~~-~~~~~~kvIvS~Htp~~eeL~~~l~~m~~~gaDI~---KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~i 182 (229)
T PRK01261 109 LIG--KLE-FRPRNTMLMVSYHTNNSDNMPAILDIMNEKNPDYV---KVACNYNDNKKFVDDLQYILMKKDEKYKPIVFI 182 (229)
T ss_pred cch--hhh-hhcCCCeEEEEeCCCCHHHHHHHHHHHHHhCCCEE---EEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 211 111 123567778899975 553 44557899998 544322211100011222223333456787666
Q ss_pred CCCCcccHHHHHH
Q 010244 462 GGIGISNASDVMK 474 (514)
Q Consensus 462 GGi~~~~~~~~~~ 474 (514)
+ +.. .+..++.
T Consensus 183 s-MG~-~iSRi~~ 193 (229)
T PRK01261 183 P-MGR-EFLRIFS 193 (229)
T ss_pred E-CCc-HHHHHHH
Confidence 5 444 5555443
No 451
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=90.12 E-value=1 Score=42.24 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=52.7
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcc----------cHHHHHHCCCCCCceE
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGIS----------NASDVMKIGVSNLKGV 483 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~----------~~~~~~~~Ga~~~~gv 483 (514)
+..|.+.|.+-+..|+-. .+.+++... .+. .+..+||.++ +..++++.|++ ++
T Consensus 135 ~~~a~~~g~~G~V~~~~~------------~~~i~~~~~-~~~-~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~---~i 197 (216)
T cd04725 135 AKLAREAGVDGVVCGATE------------PEALRRALG-PDF-LILTPGIGAQGSGDDQKRGGTPEDAIRAGAD---YI 197 (216)
T ss_pred HHHHHHHCCCEEEECCcc------------hHHHHHhhC-CCC-eEEcCCcCCCCCccccccccCHHHHHHcCCc---EE
Confidence 456677777777666522 233333221 134 4788999988 89999999999 99
Q ss_pred EEeecccCCCCHHHHHHHH
Q 010244 484 AVVSALFDRECILPESKKL 502 (514)
Q Consensus 484 a~~~~i~~~~~~~~~~~~~ 502 (514)
.+|+.|+++++|.+.++++
T Consensus 198 vvGR~I~~a~~p~~~~~~i 216 (216)
T cd04725 198 VVGRPITQAADPVAAAEAI 216 (216)
T ss_pred EEChhhccCCCHHHHHhcC
Confidence 9999999999999988753
No 452
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=90.05 E-value=13 Score=36.77 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=74.9
Q ss_pred HHHHhCCC---CEEEEEcCCCCH---HHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhc
Q 010244 325 KAALEGGA---TIIQLREKDADT---RGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALL 398 (514)
Q Consensus 325 ~~~~~~Gv---~~v~lr~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~ 398 (514)
+++.+.|. +++.+-.++-++ +...++++++-..|+..+.++++.-=. . .+. + .+.......+.
T Consensus 112 ~rike~GadavK~Llyy~pD~~~~in~~k~a~vervg~eC~a~dipf~lE~lt---Y--~~~---~--~d~~~~~yak~- 180 (324)
T PRK12399 112 KRIKEEGADAVKFLLYYDVDEPDEINEQKKAYIERIGSECVAEDIPFFLEILT---Y--DEK---I--ADNGSVEYAKV- 180 (324)
T ss_pred HHHHHhCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee---c--cCc---c--cccccHHHHhh-
Confidence 34455564 555555555554 445667888999999999998873200 0 000 0 00000011111
Q ss_pred CCCcEEEEecCCHHHHHHh---hhCCCcEEEe-ccccCCCCCCCC----ccCC----HHHHHHHHHcCCCC-EEEECCCC
Q 010244 399 GPDKIIGVSCKTPEEAHQA---WIDGANYIGC-GGVYPTNTKANN----LTVG----LDGLKTVCLASKLP-VVAIGGIG 465 (514)
Q Consensus 399 ~~~~~ig~s~~~~~e~~~a---~~~g~d~v~~-~~vf~t~~k~~~----~~~g----~~~l~~~~~~~~~p-v~a~GGi~ 465 (514)
.+.++ -++.+. ...|+|..=+ .|+....- .+. .... ...+++.....++| ||..+|++
T Consensus 181 kP~~V--------~~a~kefs~~~~gvDVlKvEvPvn~~~v-eG~~~~e~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~ 251 (324)
T PRK12399 181 KPHKV--------NEAMKVFSKPRFGVDVLKVEVPVNMKYV-EGFAEGEVVYTKEEAAQHFKEQDAATHLPYIYLSAGVS 251 (324)
T ss_pred ChHHH--------HHHHHHhccCCCCCcEEEEecccccccc-cccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCCC
Confidence 12222 122222 2478999833 12221000 000 0001 12355555556899 66678999
Q ss_pred cccH----HHHHHCCC--CCCceEEEeecccC
Q 010244 466 ISNA----SDVMKIGV--SNLKGVAVVSALFD 491 (514)
Q Consensus 466 ~~~~----~~~~~~Ga--~~~~gva~~~~i~~ 491 (514)
.+.. .-+.++|+ . ||..|+++|.
T Consensus 252 ~~~F~~~l~~A~~aGa~fs---GvL~GRAtW~ 280 (324)
T PRK12399 252 AELFQETLVFAHEAGAKFN---GVLCGRATWA 280 (324)
T ss_pred HHHHHHHHHHHHHcCCCcc---eEEeehhhhH
Confidence 7654 45556788 9 9999999994
No 453
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=90.01 E-value=2.6 Score=40.71 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE--c-----CcHHHHHhCCCCeEEeCC-----
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI--N-----DRIDIALACDADGVHLGQ----- 386 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v--~-----~~~~~a~~~ga~gvhl~~----- 386 (514)
...+.++.+.+.|++.+.+ +++..++ .+.+.+.|+++|...+. . ++.+...+..-+++++..
T Consensus 105 G~e~f~~~~~~aGvdGvii--pDLp~ee----~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 105 GVERFAADAAEAGVDGLII--PDLPPEE----AEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred CHHHHHHHHHHcCCcEEEE--CCCCHHH----HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4566778888888888887 3455443 33455666777764443 1 123333444444554411
Q ss_pred -C--CC------CHHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccC
Q 010244 387 -S--DM------PARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYP 432 (514)
Q Consensus 387 -~--~~------~~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~ 432 (514)
. .. ....+++......++|..++|++++.++.+. ||-+++|..|-
T Consensus 179 G~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 179 GARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred CcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 0 11 1234555556688999999999999999876 99999987663
No 454
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.99 E-value=3 Score=41.44 Aligned_cols=114 Identities=16% Similarity=0.228 Sum_probs=75.7
Q ss_pred CHHHHHHHHHh--CCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----CcHHHHHhCCCCeEEeCCCCCC-
Q 010244 319 SITDAVKAALE--GGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----DRIDIALACDADGVHLGQSDMP- 390 (514)
Q Consensus 319 ~~~~~~~~~~~--~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~~~~~a~~~ga~gvhl~~~~~~- 390 (514)
+..+.++++++ .|++.|.+-.-+..-+...+.++.+++... +..++.- +-.+...++|||++-++-..-.
T Consensus 108 ~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P--~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSi 185 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWP--DKTICAGNVVTGEMVEELILSGADIVKVGIGPGSV 185 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCC--CCcEEEecccCHHHHHHHHHcCCCEEEEcccCCcc
Confidence 45678888888 499999998888887877887777776432 2344431 2344556789999865432110
Q ss_pred -------------------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCCC
Q 010244 391 -------------------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPTN 434 (514)
Q Consensus 391 -------------------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t~ 434 (514)
.....+.++...+---.+.+.-++.+|..+|||.|.+|..|...
T Consensus 186 CtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt 248 (346)
T PRK05096 186 CTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGH 248 (346)
T ss_pred ccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCc
Confidence 11122222223333345678889999999999999999999743
No 455
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=89.98 E-value=3 Score=42.16 Aligned_cols=135 Identities=15% Similarity=0.125 Sum_probs=81.3
Q ss_pred cHHHHHhCCCCeEEeCCCCCC------H----HHHHhhcCCCcEEEEecCCHHHHHH--------------hh------h
Q 010244 370 RIDIALACDADGVHLGQSDMP------A----RTARALLGPDKIIGVSCKTPEEAHQ--------------AW------I 419 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~------~----~~~~~~~~~~~~ig~s~~~~~e~~~--------------a~------~ 419 (514)
.+....++|++++-++.+... . .+++..+..++.+-+-+....|-++ .. .
T Consensus 87 S~~mL~d~G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~~ 166 (355)
T PRK14905 87 SPLMLKELGIELVMIGHSERRHVLKETDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAEQ 166 (355)
T ss_pred CHHHHHHcCCCEEEECcccccCcccccHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHhh
Confidence 466777888888877664421 1 2344455566666665554332111 11 1
Q ss_pred CCCcEEEeccccCCCCC-CCCcc----CCHHHHHHH-HHcC-----CCCEEEECCCCcccHHHHHHCCCCCCceEEEeec
Q 010244 420 DGANYIGCGGVYPTNTK-ANNLT----VGLDGLKTV-CLAS-----KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSA 488 (514)
Q Consensus 420 ~g~d~v~~~~vf~t~~k-~~~~~----~g~~~l~~~-~~~~-----~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~ 488 (514)
..-.+|..=|++.-.|. ..+++ --.+.++.+ .+.+ .+||+==|+++++|+.+++... +|||+-+|++
T Consensus 167 ~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~--~iDG~LVG~a 244 (355)
T PRK14905 167 LPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKP--HIDGLFIGRS 244 (355)
T ss_pred cCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCC--CCCEEEechh
Confidence 22356777788874431 11221 122345544 2221 4799999999999999987643 3449999999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 010244 489 LFDRECILPESKKLHAVL 506 (514)
Q Consensus 489 i~~~~~~~~~~~~~~~~~ 506 (514)
-++++++.+.++.+.+.+
T Consensus 245 sl~~~~f~~Ii~~~~~~~ 262 (355)
T PRK14905 245 AWDAQCFHALIADALKAL 262 (355)
T ss_pred hccHHHHHHHHHHHHHhc
Confidence 998888877776665543
No 456
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.86 E-value=1.5 Score=43.66 Aligned_cols=83 Identities=12% Similarity=0.030 Sum_probs=53.4
Q ss_pred HhhcCCCcEEEEecCC----HHHHHHhhhCCC--cEEEeccccCCCCCCCCccCCHHHHHHHHHcCC-CCEEEECCCCcc
Q 010244 395 RALLGPDKIIGVSCKT----PEEAHQAWIDGA--NYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK-LPVVAIGGIGIS 467 (514)
Q Consensus 395 ~~~~~~~~~ig~s~~~----~~e~~~a~~~g~--d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~-~pv~a~GGi~~~ 467 (514)
|+......++++++.. .+++.+..+.|+ |+|.+-.-. + ....-.+.++++++.++ +||++--=-+.+
T Consensus 79 r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~-----g-h~~~~~e~I~~ir~~~p~~~vi~g~V~t~e 152 (326)
T PRK05458 79 KDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH-----G-HSDSVINMIQHIKKHLPETFVIAGNVGTPE 152 (326)
T ss_pred HhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-----C-chHHHHHHHHHHHhhCCCCeEEEEecCCHH
Confidence 3333335567776652 456777778855 999663211 1 22223577889988874 776662112789
Q ss_pred cHHHHHHCCCCCCceEEEe
Q 010244 468 NASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 468 ~~~~~~~~Ga~~~~gva~~ 486 (514)
.+..+.++|++ ++-++
T Consensus 153 ~a~~l~~aGad---~i~vg 168 (326)
T PRK05458 153 AVRELENAGAD---ATKVG 168 (326)
T ss_pred HHHHHHHcCcC---EEEEC
Confidence 99999999999 87765
No 457
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=89.61 E-value=2.7 Score=40.84 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEe
Q 010244 441 TVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 441 ~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~ 486 (514)
.+.|+-++|++...+.||+.=|=++.+++..+.++|++ ||.+.
T Consensus 209 Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G~~---GIIVS 251 (363)
T KOG0538|consen 209 SLSWKDIKWLRSITKLPIVVKGVLTGEDARKAVEAGVA---GIIVS 251 (363)
T ss_pred CCChhhhHHHHhcCcCCeEEEeecccHHHHHHHHhCCc---eEEEe
Confidence 36899999999999999999999999999999999999 99875
No 458
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.34 E-value=1.8 Score=41.88 Aligned_cols=39 Identities=23% Similarity=0.153 Sum_probs=33.0
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEecccc
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVY 431 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf 431 (514)
.+|+.......+|..++|++++++..+.|+|-+++|..+
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 445555667899999999999999999999999998766
No 459
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=89.34 E-value=11 Score=33.54 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=81.7
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCc---------H--H-HHHhCCCCeEEeCCCCCC
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDR---------I--D-IALACDADGVHLGQSDMP 390 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~---------~--~-~a~~~ga~gvhl~~~~~~ 390 (514)
.++.+++.-...+-+-.-+. -. ++.+.+..+..|..++++-+ . + ++....+||+-.+....
T Consensus 15 ~le~~les~~~~vflL~~~i--~~----ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk~~~- 87 (181)
T COG1954 15 DLEKALESESQYVFLLTGHI--LN----IKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTKSNV- 87 (181)
T ss_pred HHHHHhcCCCeEEEEEechh--hh----HHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCeeEEccHHH-
Confidence 45666666666555533221 11 12233344455666665321 1 1 23345677877665542
Q ss_pred HHHHHhh--cCCCcEEEEecCCHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-c
Q 010244 391 ARTARAL--LGPDKIIGVSCKTPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-I 466 (514)
Q Consensus 391 ~~~~~~~--~~~~~~ig~s~~~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~ 466 (514)
...+++. ..-....-...+..+. .....+.++|+| -+.| +.-+..++++.+..+.||+|-|=|. .
T Consensus 88 i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~i---EvLP--------Gv~Pkvi~~i~~~t~~piIAGGLi~t~ 156 (181)
T COG1954 88 IKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFI---EVLP--------GVMPKVIKEITEKTHIPIIAGGLIETE 156 (181)
T ss_pred HHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEE---EEcC--------cccHHHHHHHHHhcCCCEEeccccccH
Confidence 1222221 1112233344444443 444556889999 4443 2456889999999999999988885 7
Q ss_pred ccHHHHHHCCCCCCceEEE
Q 010244 467 SNASDVMKIGVSNLKGVAV 485 (514)
Q Consensus 467 ~~~~~~~~~Ga~~~~gva~ 485 (514)
|.+.+++++||. .|..
T Consensus 157 Eev~~Al~aGA~---avST 172 (181)
T COG1954 157 EEVREALKAGAV---AVST 172 (181)
T ss_pred HHHHHHHHhCcE---EEee
Confidence 889999999988 6643
No 460
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=89.33 E-value=3.1 Score=41.00 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHh-CCCCEEEEEc-----CCCCHHHHHHHHHHHHHHHhhcCceEEE
Q 010244 318 RSITDAVKAALE-GGATIIQLRE-----KDADTRGFLEAAKACLQICCVHGVPLLI 367 (514)
Q Consensus 318 ~~~~~~~~~~~~-~Gv~~v~lr~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~v 367 (514)
+.+.+.++.+++ .|++.+.+-- ..++.+|..++++...+.+. -+++++.
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~via 78 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIA 78 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEe
Confidence 567888888999 9999988743 45677777777766665553 2345554
No 461
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=89.28 E-value=3.7 Score=39.54 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCH----HHHHHHHHHHHHHHhhcCceEEEc------------C---c---HHHHH
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADT----RGFLEAAKACLQICCVHGVPLLIN------------D---R---IDIAL 375 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~----~~~~~~~~~~~~~~~~~~~~l~v~------------~---~---~~~a~ 375 (514)
+++...++++...|++++++|..-... ..+......+++.+. +.++++. + + ++.+.
T Consensus 28 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 105 (253)
T PRK02412 28 EEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFA--GKPLLFTFRTAKEGGEIALSDEEYLALIKAVI 105 (253)
T ss_pred HHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcC--CCcEEEEECChhhCCCCCCCHHHHHHHHHHHH
Confidence 445556666777899999999986643 333333333333221 3566651 1 1 23456
Q ss_pred hCC-CCeEEeCCCCCC--HHHH-HhhcCCCcEEEEecCC----H--HH----HHHhhhCCCcEEEeccccCCCCCCCCcc
Q 010244 376 ACD-ADGVHLGQSDMP--ARTA-RALLGPDKIIGVSCKT----P--EE----AHQAWIDGANYIGCGGVYPTNTKANNLT 441 (514)
Q Consensus 376 ~~g-a~gvhl~~~~~~--~~~~-~~~~~~~~~ig~s~~~----~--~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~ 441 (514)
+.+ ++.|-+.-.... .... ......+..+..|-|+ + +| ..++.+.|+|++ ++--+...+. ..
T Consensus 106 ~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDiv---Kia~~a~~~~-D~ 181 (253)
T PRK02412 106 KSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIV---KIAVMPQSEQ-DV 181 (253)
T ss_pred hcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEE---EEEecCCCHH-HH
Confidence 677 788877543211 1111 1112235566678983 3 33 456678899998 5443322111 11
Q ss_pred CCH-HHHHHHHHc-CCCCEEEEC
Q 010244 442 VGL-DGLKTVCLA-SKLPVVAIG 462 (514)
Q Consensus 442 ~g~-~~l~~~~~~-~~~pv~a~G 462 (514)
+-+ ....++.+. .+.|+++++
T Consensus 182 ~~ll~~~~~~~~~~~~~P~i~~~ 204 (253)
T PRK02412 182 LTLLNATREMKELYADQPLITMS 204 (253)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEe
Confidence 111 222233332 478988876
No 462
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.80 E-value=7 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=32.0
Q ss_pred HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEecccc
Q 010244 393 TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVY 431 (514)
Q Consensus 393 ~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf 431 (514)
.+|+.......+|..++|++++.++.+.|+|.+++|..+
T Consensus 192 ~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 192 RLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 445544557888999999999999999999999998654
No 463
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=88.67 E-value=9.1 Score=36.95 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=50.3
Q ss_pred ceEEEEeCCCCCccC----CCCHHHHHHHHHhCCCCEEEEEc----CC---CCHH-HHHHHHHHHHHHHhhcCceEEEcC
Q 010244 302 LFLYAVTDSGMNKKW----GRSITDAVKAALEGGATIIQLRE----KD---ADTR-GFLEAAKACLQICCVHGVPLLIND 369 (514)
Q Consensus 302 ~~ly~it~~~~~~~~----~~~~~~~~~~~~~~Gv~~v~lr~----~~---~~~~-~~~~~~~~~~~~~~~~~~~l~v~~ 369 (514)
|.+.-+||.++.... .++..+.+.+.++.|+++|-+=- +. .+++ |+.++...+..+....++++.+..
T Consensus 3 mgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT 82 (257)
T TIGR01496 3 MGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT 82 (257)
T ss_pred EEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC
Confidence 456667777664311 24566777778899999999931 11 1333 333344434434334488888865
Q ss_pred c----HHHHHhCCCCeE-EeCC
Q 010244 370 R----IDIALACDADGV-HLGQ 386 (514)
Q Consensus 370 ~----~~~a~~~ga~gv-hl~~ 386 (514)
+ .+.|.+.|++-+ |+..
T Consensus 83 ~~~~vi~~al~~G~~iINsis~ 104 (257)
T TIGR01496 83 YRAEVARAALEAGADIINDVSG 104 (257)
T ss_pred CCHHHHHHHHHcCCCEEEECCC
Confidence 3 456677888876 4443
No 464
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.64 E-value=21 Score=34.37 Aligned_cols=161 Identities=16% Similarity=0.040 Sum_probs=84.8
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE----cC--cHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI----ND--RIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v----~~--~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
.+|.+-..|.++|.+-..+.... +.++ ..+...++..+...+| ++ .++.+++.|++||-+|.-+- .+++++
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~~~-~~~~-~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~t-ae~a~~ 108 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAPND-VSTF-IPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET-AEEARR 108 (256)
T ss_pred HHHHHHhcCCCEEEEccccCCCC-HHHH-HHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCC-HHHHHH
Confidence 45556667888888866544322 2222 2233345556665554 22 24456778888887776542 122221
Q ss_pred h--------------------------------cCCCcEEEEecCCHHHHHHhh----hCCCcEEEeccccCCCCCCC-C
Q 010244 397 L--------------------------------LGPDKIIGVSCKTPEEAHQAW----IDGANYIGCGGVYPTNTKAN-N 439 (514)
Q Consensus 397 ~--------------------------------~~~~~~ig~s~~~~~e~~~a~----~~g~d~v~~~~vf~t~~k~~-~ 439 (514)
. ......+.+-+-|++-+..+. ..|+|.+++||.=-+.+-.. .
T Consensus 109 ~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~ 188 (256)
T PRK10558 109 AVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLG 188 (256)
T ss_pred HHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCC
Confidence 1 011234444455544333222 25899999988532221110 0
Q ss_pred ccCCHH---HHHHH---HHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeeccc
Q 010244 440 LTVGLD---GLKTV---CLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 440 ~~~g~~---~l~~~---~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
...+.+ .+.++ ++..++|+- +..-+++++..+++.|+. .+.+++...
T Consensus 189 ~~~~~~v~~a~~~v~~aa~~~G~~~g-~~~~~~~~~~~~~~~G~~---~v~~~~D~~ 241 (256)
T PRK10558 189 NASHPDVQKAIQHIFARAKAHGKPSG-ILAPVEADARRYLEWGAT---FVAVGSDLG 241 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCceE-EcCCCHHHHHHHHHcCCC---EEEEchHHH
Confidence 111222 22222 223367753 333467889999999999 999987543
No 465
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=88.62 E-value=2.6 Score=38.88 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=55.5
Q ss_pred CCcEEEEecCCHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHC
Q 010244 400 PDKIIGVSCKTPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKI 475 (514)
Q Consensus 400 ~~~~ig~s~~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~ 475 (514)
...+-|....+.+. ++.|..-|++|| .-....+.++.++...++||+..+ +.|+.+..+.++
T Consensus 15 lKVIsGLnNFd~~~V~~i~~AA~~ggAt~v-------------DIAadp~LV~~~~~~s~lPICVSa-Vep~~f~~aV~A 80 (242)
T PF04481_consen 15 LKVISGLNNFDAESVAAIVKAAEIGGATFV-------------DIAADPELVKLAKSLSNLPICVSA-VEPELFVAAVKA 80 (242)
T ss_pred hhheeCccccCHHHHHHHHHHHHccCCceE-------------EecCCHHHHHHHHHhCCCCeEeec-CCHHHHHHHHHh
Confidence 45566777777665 345566779999 222468888888888899999876 999999999999
Q ss_pred CCCCCceEEEee
Q 010244 476 GVSNLKGVAVVS 487 (514)
Q Consensus 476 Ga~~~~gva~~~ 487 (514)
||+ -|=+|-
T Consensus 81 GAd---liEIGN 89 (242)
T PF04481_consen 81 GAD---LIEIGN 89 (242)
T ss_pred CCC---EEEecc
Confidence 999 888774
No 466
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=88.53 E-value=4.8 Score=38.36 Aligned_cols=90 Identities=28% Similarity=0.367 Sum_probs=60.1
Q ss_pred EecCCHHHHHHhhhCCCcEEEec-cccCCCCCCCCccCCHHHHHHHHHcCCCCEEEE----CC-C--C-------cccHH
Q 010244 406 VSCKTPEEAHQAWIDGANYIGCG-GVYPTNTKANNLTVGLDGLKTVCLASKLPVVAI----GG-I--G-------ISNAS 470 (514)
Q Consensus 406 ~s~~~~~e~~~a~~~g~d~v~~~-~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~----GG-i--~-------~~~~~ 470 (514)
+-+.|++++..|.+.|||-|=+. .... .+ -......++.+++..++||+++ || - + .+++.
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~----GG-lTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKE----GG-LTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCC----CC-cCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999543 2222 11 1235677888888889999987 44 2 2 23578
Q ss_pred HHHHCCCCCCceEEEeecccCCCCH-HHHHHHHHH
Q 010244 471 DVMKIGVSNLKGVAVVSALFDRECI-LPESKKLHA 504 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~~~~-~~~~~~~~~ 504 (514)
.++++|++ ||.+| ++....++ .++.++|.+
T Consensus 81 ~~~~~Gad---GvV~G-~L~~dg~vD~~~~~~Li~ 111 (248)
T PRK11572 81 TVRELGFP---GLVTG-VLDVDGHVDMPRMRKIMA 111 (248)
T ss_pred HHHHcCCC---EEEEe-eECCCCCcCHHHHHHHHH
Confidence 89999999 99887 44433222 334444443
No 467
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=88.50 E-value=1.9 Score=43.82 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=49.5
Q ss_pred HHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCC-CcccHHHHHHCCCCCCceEEEee
Q 010244 411 PEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGI-GISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 411 ~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi-~~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
.+-+..+.+.|+|++++..-.-.+.+.. ....|..+.++++..++||++ |++ +.+++..++++|++ +|.+++
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~~~s-g~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaD---gV~~G~ 217 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAEHVS-TSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAA---GVIVGP 217 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccC-CCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCC---EEEECC
Confidence 3446777899999997753221111100 012367778888888999998 666 57888999999999 988553
No 468
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.30 E-value=4.4 Score=38.80 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=67.1
Q ss_pred CHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEE--EcC-----cHHHHHhCCCCeEEeCC-----
Q 010244 319 SITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLL--IND-----RIDIALACDADGVHLGQ----- 386 (514)
Q Consensus 319 ~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~~-----~~~~a~~~ga~gvhl~~----- 386 (514)
...+.++.+.+.|++.+.+..-..+.. +...++...++++|...+ ++. ..+...+..-..+..+.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~---~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g 165 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYP---DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATG 165 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcH---HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 566788899999999999965322211 123345566778887554 333 22333333333333221
Q ss_pred CCCC------HHHHHhhc-CCCcEEEEecCCHHHHHHhhhCCCcEEEecccc
Q 010244 387 SDMP------ARTARALL-GPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVY 431 (514)
Q Consensus 387 ~~~~------~~~~~~~~-~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf 431 (514)
..+. ...+|+.. .....+|..++|++++..+.+.|+|.+++|..+
T Consensus 166 ~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai 217 (244)
T PRK13125 166 VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAF 217 (244)
T ss_pred CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 0111 22344443 235677888999999999999999999998644
No 469
>PRK15452 putative protease; Provisional
Probab=88.16 E-value=10 Score=39.71 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=81.3
Q ss_pred HHHHHHHHhCCCCEEEEEcC---------CCCHHHHHHHHHHHHHHHhhcCceEEEc-------C-------cHHHHHhC
Q 010244 321 TDAVKAALEGGATIIQLREK---------DADTRGFLEAAKACLQICCVHGVPLLIN-------D-------RIDIALAC 377 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~v~-------~-------~~~~a~~~ 377 (514)
.+.+.+++++|++.|.+-.+ ..+.++ .++..+.|+.+|+++.+. + .++...++
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~ed----l~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~ 88 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHEN----LALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAM 88 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHH----HHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhC
Confidence 46788999999999999333 233333 334556788888877542 1 13445578
Q ss_pred CCCeEEeCCCCCCHHHHHhhcCCCcEEE----EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHc
Q 010244 378 DADGVHLGQSDMPARTARALLGPDKIIG----VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLA 453 (514)
Q Consensus 378 ga~gvhl~~~~~~~~~~~~~~~~~~~ig----~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~ 453 (514)
|+|+|-+..... ...+++.. ++..+- .+++|...++...+.|++-+++++ .+.++.|+.+++.
T Consensus 89 gvDgvIV~d~G~-l~~~ke~~-p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSr-----------ELsl~EI~~i~~~ 155 (443)
T PRK15452 89 KPDALIMSDPGL-IMMVREHF-PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSR-----------ELSLEEIEEIRQQ 155 (443)
T ss_pred CCCEEEEcCHHH-HHHHHHhC-CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECC-----------cCCHHHHHHHHhh
Confidence 999998865332 23344432 333332 345688899989999999998865 2568888888743
Q ss_pred C---CCCEEEECCC
Q 010244 454 S---KLPVVAIGGI 464 (514)
Q Consensus 454 ~---~~pv~a~GGi 464 (514)
. ++-+++-|-+
T Consensus 156 ~~~~elEvfVHGal 169 (443)
T PRK15452 156 CPDMELEVFVHGAL 169 (443)
T ss_pred CCCCCEEEEEEccc
Confidence 2 3345555433
No 470
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=88.16 E-value=3.2 Score=39.63 Aligned_cols=124 Identities=18% Similarity=0.153 Sum_probs=73.4
Q ss_pred cHHHHHhCCCCeEEeCCCCCC----------HHHHHhhcCCCcEEEEecCC-HHH-------------HHHhh----hCC
Q 010244 370 RIDIALACDADGVHLGQSDMP----------ARTARALLGPDKIIGVSCKT-PEE-------------AHQAW----IDG 421 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~----------~~~~~~~~~~~~~ig~s~~~-~~e-------------~~~a~----~~g 421 (514)
.++...++|+++|-++..... ..+++..+..++.+-+-+.. .+| +.... ...
T Consensus 76 S~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~ 155 (242)
T cd00311 76 SAEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLA 155 (242)
T ss_pred CHHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHcCCHHHHHHHHHHHHHhcchhhc
Confidence 466777888888866654322 12333445566666655553 322 11111 112
Q ss_pred CcEEEeccccCCCCCCCCccCCH----HHHHHHHHc-C-----CCCEEEECCCCcccHHHHHHCC-CCCCceEEEeeccc
Q 010244 422 ANYIGCGGVYPTNTKANNLTVGL----DGLKTVCLA-S-----KLPVVAIGGIGISNASDVMKIG-VSNLKGVAVVSALF 490 (514)
Q Consensus 422 ~d~v~~~~vf~t~~k~~~~~~g~----~~l~~~~~~-~-----~~pv~a~GGi~~~~~~~~~~~G-a~~~~gva~~~~i~ 490 (514)
-.+|..=|++.-.|...+++-.. ..++++... . .+||+-=|+++++|+.++++.+ ++ |+-+|++-+
T Consensus 156 ~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vD---G~LVG~Asl 232 (242)
T cd00311 156 PVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDID---GVLVGGASL 232 (242)
T ss_pred CeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCC---EEEeehHhh
Confidence 35676777776554333322211 223333221 1 4899999999999999999998 55 999999999
Q ss_pred CCCCHH
Q 010244 491 DRECIL 496 (514)
Q Consensus 491 ~~~~~~ 496 (514)
+.++..
T Consensus 233 ~~~~f~ 238 (242)
T cd00311 233 KAESFL 238 (242)
T ss_pred CHHHHH
Confidence 654443
No 471
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=88.12 E-value=6.1 Score=40.55 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-----CcHHHHHhCCCCeEEeCCCCCCH-
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-----DRIDIALACDADGVHLGQSDMPA- 391 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-----~~~~~a~~~ga~gvhl~~~~~~~- 391 (514)
++-.++++.+.+.|++.|++-.+..++.++. .++.+.+. .....++.. .+++.+.++|++.+|+....-+.
T Consensus 26 e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e-~i~~i~~~--~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h 102 (378)
T PRK11858 26 EEKLAIARMLDEIGVDQIEAGFPAVSEDEKE-AIKAIAKL--GLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIH 102 (378)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcChHHHH-HHHHHHhc--CCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHH
Confidence 4557778888899999999988888777643 33444332 223344432 35788999999999885432111
Q ss_pred -------------H----HHHhhcCCCcEEEEec-----CCHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCH-
Q 010244 392 -------------R----TARALLGPDKIIGVSC-----KTPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGL- 444 (514)
Q Consensus 392 -------------~----~~~~~~~~~~~ig~s~-----~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~- 444 (514)
. .++.....+..+-.++ ++++. +..+.+.|+|.|.+. +|. ....|...
T Consensus 103 ~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~---DT~--G~~~P~~v~ 177 (378)
T PRK11858 103 IKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC---DTV--GILDPFTMY 177 (378)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe---ccC--CCCCHHHHH
Confidence 0 1222223455555554 35554 455678999998553 222 11222222
Q ss_pred HHHHHHHHcCCCCEEEEC----CCCcccHHHHHHCCCC
Q 010244 445 DGLKTVCLASKLPVVAIG----GIGISNASDVMKIGVS 478 (514)
Q Consensus 445 ~~l~~~~~~~~~pv~a~G----Gi~~~~~~~~~~~Ga~ 478 (514)
+.++.+++.+++|+=.=+ |....|.-.++++|++
T Consensus 178 ~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~ 215 (378)
T PRK11858 178 ELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAK 215 (378)
T ss_pred HHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 556666666666654333 3334577788899999
No 472
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=88.07 E-value=7.4 Score=37.42 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=70.5
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE--cC--cHHHHHhCCCCeEEeCCCCCCH-------
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI--ND--RIDIALACDADGVHLGQSDMPA------- 391 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v--~~--~~~~a~~~ga~gvhl~~~~~~~------- 391 (514)
.+..+...|++.|.|-..-++.+++. .+...|+..|...+| ++ .++.|..+|++-+=+.+.++..
T Consensus 123 QI~eA~~~GADaVLLI~~~L~~~~l~----~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~ 198 (254)
T PF00218_consen 123 QIYEARAAGADAVLLIAAILSDDQLE----ELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNR 198 (254)
T ss_dssp HHHHHHHTT-SEEEEEGGGSGHHHHH----HHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHH
T ss_pred HHHHHHHcCCCEeehhHHhCCHHHHH----HHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHH
Confidence 46677789999999999888876644 455677788886665 44 4566778999977776666431
Q ss_pred -HHHHhhcCCCcEEE--EecCCHHHHHHhhhCCCcEEEeccccC
Q 010244 392 -RTARALLGPDKIIG--VSCKTPEEAHQAWIDGANYIGCGGVYP 432 (514)
Q Consensus 392 -~~~~~~~~~~~~ig--~s~~~~~e~~~a~~~g~d~v~~~~vf~ 432 (514)
..+....+.+.++- .+++|++++....+.|+|-+++|..+-
T Consensus 199 ~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm 242 (254)
T PF00218_consen 199 TEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEALM 242 (254)
T ss_dssp HHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHH
T ss_pred HHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHh
Confidence 13333333333332 234699999999999999999997664
No 473
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.01 E-value=31 Score=34.51 Aligned_cols=148 Identities=17% Similarity=0.163 Sum_probs=100.5
Q ss_pred HHHHHHHHhCC-----------CCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCC
Q 010244 321 TDAVKAALEGG-----------ATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 321 ~~~~~~~~~~G-----------v~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~ 389 (514)
.+.+..+++.| .+.+.+--...+.++-++..+++.+.++..|+.+-.. +| |++....
T Consensus 100 ~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaE--------lG----~igG~ed 167 (340)
T cd00453 100 LPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIE--------LG----CTGGEED 167 (340)
T ss_pred HHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------EE----ecCCccC
Confidence 47899999999 9999998888888888888999999998887765321 11 2221110
Q ss_pred CHHHHHhhcCCCcEEEEecCCHHHHHHhh-hCC----CcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcC--------
Q 010244 390 PARTARALLGPDKIIGVSCKTPEEAHQAW-IDG----ANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLAS-------- 454 (514)
Q Consensus 390 ~~~~~~~~~~~~~~ig~s~~~~~e~~~a~-~~g----~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~-------- 454 (514)
..... ... . ..--.+|+|+.+-. +.| +|.+.+ |.+.-.. |.+.+.+.++.++++.+.+
T Consensus 168 ~~~~~--~~~-~---~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Y-k~g~p~L~~~~L~~i~~~~~~~~gl~~ 240 (340)
T cd00453 168 GVDNS--HMD-A---SALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVY-KKGNVVLTPTILRDSQEYVSKKHNLPH 240 (340)
T ss_pred Ccccc--ccc-c---cccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCC-CCCCCccCHHHHHHHHHHHHhhcccCC
Confidence 00000 000 0 00134799888766 578 888655 4443322 2223558899999998876
Q ss_pred -CCCEEEECCCC--cccHHHHHHCCCCCCceEEEeeccc
Q 010244 455 -KLPVVAIGGIG--ISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 455 -~~pv~a~GGi~--~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
++|++.=||-. .+.+..+.+.|+. -|=+.+.+.
T Consensus 241 ~~~pLVlHGgSG~~~e~~~~ai~~Gi~---KiNi~Te~~ 276 (340)
T cd00453 241 NSLNFVFHGGSGSTAQEIKDSVSYGVV---KMNIDTDTQ 276 (340)
T ss_pred CCCceEEeCCCCCCHHHHHHHHHcCCe---EEEcccHHH
Confidence 79999999875 5789999999999 888877653
No 474
>PLN02858 fructose-bisphosphate aldolase
Probab=87.99 E-value=19 Score=43.42 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=102.5
Q ss_pred HHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhhcCC
Q 010244 321 TDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARALLGP 400 (514)
Q Consensus 321 ~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~~~~ 400 (514)
.+.+.++++.|.+.|.+--...+.++-.+.-+++.++|+.+|+.+--. +| |++.......... .
T Consensus 1182 ~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaE--------lG----~v~g~e~~~~~~~----~ 1245 (1378)
T PLN02858 1182 KHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAE--------LG----RLSGTEDGLTVEE----Y 1245 (1378)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE--------ec----ccCCccCCccccc----c
Confidence 467889999999999999999999999999999999999998866431 11 2221110000000 0
Q ss_pred CcEEEEecCCHHHHHHhh-hCCCcEEEe--ccccCCCCCCCCccCCHHHHHHHHHcC---CCCEEEECCCC--cccHHHH
Q 010244 401 DKIIGVSCKTPEEAHQAW-IDGANYIGC--GGVYPTNTKANNLTVGLDGLKTVCLAS---KLPVVAIGGIG--ISNASDV 472 (514)
Q Consensus 401 ~~~ig~s~~~~~e~~~a~-~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~~~~~~~---~~pv~a~GGi~--~~~~~~~ 472 (514)
. ..-.+++|+.+-. +-|+|.+.+ |.+.-.. +++.+.+.++.|+++++.+ ++|++.=||-. .+++.++
T Consensus 1246 ~----~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y-~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~~~~a 1320 (1378)
T PLN02858 1246 E----AKLTDVDQAKEFIDETGIDALAVCIGNVHGKY-PASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESLIKEC 1320 (1378)
T ss_pred c----cCCCCHHHHHHHHHhcCCcEEeeecccccccC-CCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHHHHHH
Confidence 0 0134788887755 569999765 3333211 1112457899999999988 79999999765 6889999
Q ss_pred HHCCCCCCceEEEeeccc
Q 010244 473 MKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 473 ~~~Ga~~~~gva~~~~i~ 490 (514)
.+.|.. -|=+.+.+.
T Consensus 1321 i~~Gi~---KiNi~T~~~ 1335 (1378)
T PLN02858 1321 IENGVR---KFNVNTEVR 1335 (1378)
T ss_pred HHcCCe---EEEeCHHHH
Confidence 999999 998888775
No 475
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.93 E-value=7.5 Score=38.91 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=39.4
Q ss_pred HHHhCCCCeEEeCCCCCC-------------------HHHHHhhcCCCcEEEEecCCHHHHHHhhhC-CCcEEEecccc
Q 010244 373 IALACDADGVHLGQSDMP-------------------ARTARALLGPDKIIGVSCKTPEEAHQAWID-GANYIGCGGVY 431 (514)
Q Consensus 373 ~a~~~ga~gvhl~~~~~~-------------------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~-g~d~v~~~~vf 431 (514)
.+.+.|+|++|+...... ...+++......+..-+.+|++++.++.+. |+|+|.+|-.+
T Consensus 236 ~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ 314 (327)
T cd02803 236 ALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRAL 314 (327)
T ss_pred HHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHH
Confidence 445779999997543211 123444444444545556789999999988 79999998654
No 476
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=87.85 E-value=4.4 Score=38.20 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCCHHH---HHHHHHHHHHHHhhcCceEEEc------------C------cHHHHHhCCCCeEEeCCCCC
Q 010244 331 GATIIQLREKDADTRG---FLEAAKACLQICCVHGVPLLIN------------D------RIDIALACDADGVHLGQSDM 389 (514)
Q Consensus 331 Gv~~v~lr~~~~~~~~---~~~~~~~~~~~~~~~~~~l~v~------------~------~~~~a~~~ga~gvhl~~~~~ 389 (514)
|+++|++|........ ..+.+..+++ ..+.++++. + -++.+.+.|++.|-+.-...
T Consensus 24 ~aD~vElR~D~~~~~~~~~~~~~~~~lr~---~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~~ 100 (225)
T cd00502 24 GADAVELRVDLLEDPSIDDVAEQLSLLRE---LTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDSA 100 (225)
T ss_pred CCCEEEEEEeeccccchHHHHHHHHHHHH---hCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecch
Confidence 8999999998765532 3333344433 334666651 0 12446677888887754321
Q ss_pred CHH-HHHhhcCCCcEEEEecCCH------HH----HHHhhhCCCcEE
Q 010244 390 PAR-TARALLGPDKIIGVSCKTP------EE----AHQAWIDGANYI 425 (514)
Q Consensus 390 ~~~-~~~~~~~~~~~ig~s~~~~------~e----~~~a~~~g~d~v 425 (514)
... .+......+..+..|.|+. ++ +.++...|+|++
T Consensus 101 ~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadiv 147 (225)
T cd00502 101 LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIV 147 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEE
Confidence 111 2222223456667789842 33 456678899999
No 477
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=87.67 E-value=5.9 Score=39.18 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEeCCCC-CccCCCCHHHHHHHHHhCCCCEEEE-----EcCCCCHHHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCC
Q 010244 306 AVTDSGM-NKKWGRSITDAVKAALEGGATIIQL-----REKDADTRGFLEAAKACLQICCVHGVPLLINDRIDIALACDA 379 (514)
Q Consensus 306 ~it~~~~-~~~~~~~~~~~~~~~~~~Gv~~v~l-----r~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga 379 (514)
+|||-.. .....+.+.+.++.+++.|++.|.+ -...++.+|..+.++...+.+ ++++
T Consensus 12 ~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~---------~grv-------- 74 (299)
T COG0329 12 LVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAV---------GGRV-------- 74 (299)
T ss_pred cccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHH---------CCCC--------
Q ss_pred CeEEeCCCCCCHHHHHhhcCCCcEEEEecCCHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCC
Q 010244 380 DGVHLGQSDMPARTARALLGPDKIIGVSCKTPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASK 455 (514)
Q Consensus 380 ~gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~ 455 (514)
..+.|++..+.+| ++.|.+.|+|.+.+-|-+.....+..- .+.++.+.+..+
T Consensus 75 ---------------------pviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl---~~hf~~ia~a~~ 130 (299)
T COG0329 75 ---------------------PVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGL---YAHFKAIAEAVD 130 (299)
T ss_pred ---------------------cEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHH---HHHHHHHHHhcC
Q ss_pred CCEEE
Q 010244 456 LPVVA 460 (514)
Q Consensus 456 ~pv~a 460 (514)
+|++.
T Consensus 131 lPvil 135 (299)
T COG0329 131 LPVIL 135 (299)
T ss_pred CCEEE
No 478
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=87.51 E-value=1.4 Score=41.92 Aligned_cols=38 Identities=5% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHHCCCCCCceEEEeecccCCCCHHHHHHHHHHHHHHH
Q 010244 469 ASDVMKIGVSNLKGVAVVSALFDRECILPESKKLHAVLMDA 509 (514)
Q Consensus 469 ~~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~~~ 509 (514)
..+...+|++ .+.+|+.|+.++||.+.++++.+.+...
T Consensus 200 ~~~A~~~Gad---~ivVGR~I~~a~~p~~a~~~i~~~~~~~ 237 (240)
T COG0284 200 PGEAVRAGAD---YIVVGRPITQAGDPVAAARAIAREIARE 237 (240)
T ss_pred HHHHHhcCCC---EEEEChhhhcCCChHHHHHHHHHHHHHh
Confidence 5678889999 9999999999999999999888877653
No 479
>PTZ00333 triosephosphate isomerase; Provisional
Probab=87.33 E-value=8.2 Score=37.18 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=72.9
Q ss_pred cHHHHHhCCCCeEEeCCCCCC----------HHHHHhhcCCCcEEEEecCCHH--------------HHHHhhhCCC-c-
Q 010244 370 RIDIALACDADGVHLGQSDMP----------ARTARALLGPDKIIGVSCKTPE--------------EAHQAWIDGA-N- 423 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~----------~~~~~~~~~~~~~ig~s~~~~~--------------e~~~a~~~g~-d- 423 (514)
.+....++|++++-++..... ..+++..+..++.+-+-+.... ++..+.+ +. +
T Consensus 81 S~~mL~d~G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~-~v~~~ 159 (255)
T PTZ00333 81 SAEMLKDLGINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVK-KVSDE 159 (255)
T ss_pred CHHHHHHcCCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHh-cCCHH
Confidence 466777888888866654321 1234445556776666555422 3433332 22 2
Q ss_pred -----EEEeccccCCCCCCCCccCCHHHHH----HHHH----c------CCCCEEEECCCCcccHHHHHH-CCCCCCceE
Q 010244 424 -----YIGCGGVYPTNTKANNLTVGLDGLK----TVCL----A------SKLPVVAIGGIGISNASDVMK-IGVSNLKGV 483 (514)
Q Consensus 424 -----~v~~~~vf~t~~k~~~~~~g~~~l~----~~~~----~------~~~pv~a~GGi~~~~~~~~~~-~Ga~~~~gv 483 (514)
+|..=|++.-.|...+ ..+.++ .+++ . -.+||+==|+++++|+.+++. .+.+ |+
T Consensus 160 ~~~~iiIAYEPvWAIGtg~~a---~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vD---G~ 233 (255)
T PTZ00333 160 AWDNIVIAYEPVWAIGTGKVA---TPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDID---GF 233 (255)
T ss_pred HcceEEEEECCHHHhCCCCCC---CHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCC---EE
Confidence 5666787765543333 333332 2222 1 148999999999999988766 5556 99
Q ss_pred EEeecccCCCCHHHHH
Q 010244 484 AVVSALFDRECILPES 499 (514)
Q Consensus 484 a~~~~i~~~~~~~~~~ 499 (514)
-+|++-++ +++.+.+
T Consensus 234 LvG~asl~-~~f~~Ii 248 (255)
T PTZ00333 234 LVGGASLK-PDFVDII 248 (255)
T ss_pred EEehHhhh-hhHHHHH
Confidence 99999986 3444444
No 480
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=87.18 E-value=15 Score=36.23 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEee
Q 010244 413 EAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 413 e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
.+..+.+.|+|.+.+.-=.|. + + ....++.++++++.+++||++=+=.+++++..+.++|++ +|.+..
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~--~-~-~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d---~I~v~~ 201 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPV--L-G-RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGAD---GIVVSN 201 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCC--C-C-CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCC---EEEEcC
Confidence 355666789999876321111 1 1 114578999999988999998776788999999999999 998854
No 481
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.17 E-value=30 Score=33.55 Aligned_cols=161 Identities=14% Similarity=0.059 Sum_probs=81.6
Q ss_pred HHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEE----cC--cHHHHHhCCCCeEEeCCCCCCHHHHHh
Q 010244 323 AVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLI----ND--RIDIALACDADGVHLGQSDMPARTARA 396 (514)
Q Consensus 323 ~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v----~~--~~~~a~~~ga~gvhl~~~~~~~~~~~~ 396 (514)
.++.+-..|.++|.+-.-+... .+.++...+ ..++..+...++ ++ .+.-+++.||+||-+|.-+-. +++++
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~-~~~~l~~~i-~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~sa-eeA~~ 107 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPN-TIQDLYHQL-QAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTA-EQARQ 107 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCC-CHHHHHHHH-HHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCH-HHHHH
Confidence 4555566788888885554332 222222222 233345554443 22 244567778888877764421 11111
Q ss_pred h-----c----------------------------CCCcEEEEecCCHHHHHHhh----hCCCcEEEeccccCCCCC--C
Q 010244 397 L-----L----------------------------GPDKIIGVSCKTPEEAHQAW----IDGANYIGCGGVYPTNTK--A 437 (514)
Q Consensus 397 ~-----~----------------------------~~~~~ig~s~~~~~e~~~a~----~~g~d~v~~~~vf~t~~k--~ 437 (514)
. + .....+.+-+-|++-+..+. .-|.|.+++||.--+.+- +
T Consensus 108 ~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~ 187 (267)
T PRK10128 108 VVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYP 187 (267)
T ss_pred HHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCC
Confidence 0 0 01223333334433322221 358999999886211111 1
Q ss_pred CC--ccCCHHHHHHHHH---cCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeeccc
Q 010244 438 NN--LTVGLDGLKTVCL---ASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALF 490 (514)
Q Consensus 438 ~~--~~~g~~~l~~~~~---~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~ 490 (514)
.. .+.-.+.++++.+ ..++|+- +-..+++.+..+++.|+. .+.+++...
T Consensus 188 ~~~~~pev~~ai~~v~~a~~~~Gk~~G-~~~~~~~~a~~~~~~G~~---~v~~g~D~~ 241 (267)
T PRK10128 188 DNAGHPEVQRIIETSIRRIRAAGKAAG-FLAVDPDMAQKCLAWGAN---FVAVGVDTM 241 (267)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEE-EcCCCHHHHHHHHHcCCc---EEEEChHHH
Confidence 10 1111233444433 3356542 223467889999999999 999998654
No 482
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=87.07 E-value=3.5 Score=38.96 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=58.7
Q ss_pred CHHH-HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 410 TPEE-AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 410 ~~~e-~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+|-+ +..-.+.||.++ |+-+-+.-....+...+.++++++..++||-.-|||. .+.+..++++|+. -|.+|+
T Consensus 32 ~P~~~a~~~~~~Ga~~l---HlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~---rViiGt 105 (241)
T COG0106 32 DPLEVAKKWSDQGAEWL---HLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVA---RVIIGT 105 (241)
T ss_pred CHHHHHHHHHHcCCcEE---EEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCC---EEEEec
Confidence 4554 555557999999 7765432222334578899999999999999999997 6788999999999 999998
Q ss_pred cccC
Q 010244 488 ALFD 491 (514)
Q Consensus 488 ~i~~ 491 (514)
.-..
T Consensus 106 ~av~ 109 (241)
T COG0106 106 AAVK 109 (241)
T ss_pred ceec
Confidence 7764
No 483
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=87.07 E-value=12 Score=38.02 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEee
Q 010244 440 LTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+.+.|+.++|+++..++||+.=|=.+++++..+.++|++ +|.+..
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd---~I~Vsn 253 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAA---GIIVSN 253 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcCCC---EEEECC
Confidence 356899999999988999999998899999999999999 987754
No 484
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=87.03 E-value=21 Score=33.60 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=95.9
Q ss_pred HHHHHhCCCCEEEEEcCCCCH--HHHHHHHHHHHHHHhhcCceE--EEcC------cHHH----HHhCCCCeEEeCCCCC
Q 010244 324 VKAALEGGATIIQLREKDADT--RGFLEAAKACLQICCVHGVPL--LIND------RIDI----ALACDADGVHLGQSDM 389 (514)
Q Consensus 324 ~~~~~~~Gv~~v~lr~~~~~~--~~~~~~~~~~~~~~~~~~~~l--~v~~------~~~~----a~~~ga~gvhl~~~~~ 389 (514)
...++++|+++|=+-++.... ......++++....... .++ .+-| .+.. +...|+|+|-++-...
T Consensus 13 A~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~-~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~ 91 (235)
T PF04476_consen 13 AEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGR-KPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGC 91 (235)
T ss_pred HHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCC-CceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCC
Confidence 556889999999886663210 11123344555544322 223 2322 1122 2346999998876432
Q ss_pred C-H----H----HHHhh--cCCCc-EEEEe--------cCCHHHHH-HhhhCCCcEEEeccccCCCCCCC---CccCCHH
Q 010244 390 P-A----R----TARAL--LGPDK-IIGVS--------CKTPEEAH-QAWIDGANYIGCGGVYPTNTKAN---NLTVGLD 445 (514)
Q Consensus 390 ~-~----~----~~~~~--~~~~~-~ig~s--------~~~~~e~~-~a~~~g~d~v~~~~vf~t~~k~~---~~~~g~~ 445 (514)
. . . ..+.. +..+. ++.+. +.++.++. .+.+.|+|-+.+ +|..|.+ ...+..+
T Consensus 92 ~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMl----DTa~Kdg~~L~d~~~~~ 167 (235)
T PF04476_consen 92 KDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVML----DTADKDGGSLFDHLSEE 167 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEE----ecccCCCCchhhcCCHH
Confidence 1 1 0 11111 11222 33221 22444543 456889998855 4555544 2456777
Q ss_pred HHHHHHHcC---CCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCCC
Q 010244 446 GLKTVCLAS---KLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDRE 493 (514)
Q Consensus 446 ~l~~~~~~~---~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~~ 493 (514)
.|.++.+.. .+-+-..|-+..++++.++..+.+ .+++-++++...
T Consensus 168 ~L~~Fv~~ar~~gL~~aLAGSL~~~di~~L~~l~pD---~lGfRGAvC~gg 215 (235)
T PF04476_consen 168 ELAEFVAQARAHGLMCALAGSLRFEDIPRLKRLGPD---ILGFRGAVCGGG 215 (235)
T ss_pred HHHHHHHHHHHccchhhccccCChhHHHHHHhcCCC---EEEechhhCCCC
Confidence 777776554 677777888999999999999999 999999999653
No 485
>PLN02535 glycolate oxidase
Probab=87.02 E-value=13 Score=37.88 Aligned_cols=45 Identities=18% Similarity=0.378 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEee
Q 010244 440 LTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+.+.|+.++++++..++||++=|=++++++..+.++|++ +|.+..
T Consensus 208 ~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD---~I~vsn 252 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEVGVA---GIIVSN 252 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcCCC---EEEEeC
Confidence 357899999999988999999888899999999999999 998864
No 486
>PLN02979 glycolate oxidase
Probab=86.96 E-value=13 Score=37.59 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=40.1
Q ss_pred ccCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEee
Q 010244 440 LTVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 440 ~~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
+.+.|+.++|+++..++||++=|=.+++++..+.++|++ +|.+..
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd---~I~Vsn 252 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAA---GIIVSN 252 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCC---EEEECC
Confidence 347899999999988999999998899999999999999 987754
No 487
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=86.85 E-value=28 Score=32.86 Aligned_cols=180 Identities=19% Similarity=0.186 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHhCCCCEE--EEEcC--CCCHHHHHHHHHHHHHHHhhcCceEEE-----cCcHHHHHhCCCCeEEeCCCC
Q 010244 318 RSITDAVKAALEGGATII--QLREK--DADTRGFLEAAKACLQICCVHGVPLLI-----NDRIDIALACDADGVHLGQSD 388 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v--~lr~~--~~~~~~~~~~~~~~~~~~~~~~~~l~v-----~~~~~~a~~~ga~gvhl~~~~ 388 (514)
.+..+....+.++|++.| ++|+. +..+.+... +++.+. .++-+ .+.+++|.+...+-+-|-...
T Consensus 24 Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~----L~~~~~---~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~ 96 (239)
T PRK05265 24 PDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRL----LRETLK---TELNLEMAATEEMLDIALEVKPHQVTLVPEK 96 (239)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHH----HHHhcC---CCEEeccCCCHHHHHHHHHCCCCEEEECCCC
Confidence 356677788889998765 55665 333444433 333332 23433 235678888888887664322
Q ss_pred C---------CH--------HHHHhhcCCCcEEEEecC-CHHHHHHhhhCCCcEEEe--ccccCCCCCCCCccCCHHHHH
Q 010244 389 M---------PA--------RTARALLGPDKIIGVSCK-TPEEAHQAWIDGANYIGC--GGVYPTNTKANNLTVGLDGLK 448 (514)
Q Consensus 389 ~---------~~--------~~~~~~~~~~~~ig~s~~-~~~e~~~a~~~g~d~v~~--~~vf~t~~k~~~~~~g~~~l~ 448 (514)
. .+ ..+.++...+..+..-.. +++++..|.+.|+|+|=+ |++-..... ....-++.+.
T Consensus 97 r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG~yA~a~~~--~~~~el~~~~ 174 (239)
T PRK05265 97 REELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTGPYADAKTE--AEAAELERIA 174 (239)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechhhhcCCCc--chHHHHHHHH
Confidence 1 11 123334445666665554 799999999999999976 333221111 1111233443
Q ss_pred HHHH---cCCCCEEEECCCCcccHHHHHHCCCCCCceEEEeecccCC---CCHHHHHHHHHHHHHH
Q 010244 449 TVCL---ASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVVSALFDR---ECILPESKKLHAVLMD 508 (514)
Q Consensus 449 ~~~~---~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~~~i~~~---~~~~~~~~~~~~~~~~ 508 (514)
...+ ..++-|-|=.|++.+|+..+.+. .+|.=+-+|-+|... -...+++++|++.+++
T Consensus 175 ~aa~~a~~lGL~VnAGHgLny~Nv~~i~~i--p~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~~ 238 (239)
T PRK05265 175 KAAKLAASLGLGVNAGHGLNYHNVKPIAAI--PGIEELNIGHAIIARALFVGLEEAVREMKRLMDE 238 (239)
T ss_pred HHHHHHHHcCCEEecCCCCCHHhHHHHhhC--CCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3332 34899999999999999997653 233377778777632 1345667777766653
No 488
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=86.71 E-value=9.5 Score=40.01 Aligned_cols=151 Identities=12% Similarity=0.058 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEE----------cCCCCHHHHHHHHHHHHHHHhhcCceEE------------------EcC
Q 010244 318 RSITDAVKAALEGGATIIQLR----------EKDADTRGFLEAAKACLQICCVHGVPLL------------------IND 369 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------------v~~ 369 (514)
++..++++.+-+.|+..+++. .-+.++.+..+ .+++... ++++. +..
T Consensus 26 ~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~---~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 26 EEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLR---KIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHH---HHHHhCC--CCEEEEEeccccccccccCchhhHHH
Confidence 456778888889999999994 33444444333 3333221 23332 223
Q ss_pred cHHHHHhCCCCeEEeCCCCCCHH----HHHhhcCCCcEE----EEe---cCCH----HHHHHhhhCCCcEEEeccccCCC
Q 010244 370 RIDIALACDADGVHLGQSDMPAR----TARALLGPDKII----GVS---CKTP----EEAHQAWIDGANYIGCGGVYPTN 434 (514)
Q Consensus 370 ~~~~a~~~ga~gvhl~~~~~~~~----~~~~~~~~~~~i----g~s---~~~~----~e~~~a~~~g~d~v~~~~vf~t~ 434 (514)
+++.|.+.|.+.+++-..--+.. .++.....+..+ ..+ .|++ +-++++.+.|+|.|.+. +|.
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~---Dt~ 177 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK---DMA 177 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc---CCC
Confidence 45889999999887754321111 111122223322 221 2343 34667889999999653 221
Q ss_pred CCCCCccC-CHHHHHHHHHcCCCCEEE----ECCCCcccHHHHHHCCCC
Q 010244 435 TKANNLTV-GLDGLKTVCLASKLPVVA----IGGIGISNASDVMKIGVS 478 (514)
Q Consensus 435 ~k~~~~~~-g~~~l~~~~~~~~~pv~a----~GGi~~~~~~~~~~~Ga~ 478 (514)
.-..|. --+.++.+++.+++|+-. .-|....|.-.++++|++
T Consensus 178 --G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad 224 (448)
T PRK12331 178 --GILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGAD 224 (448)
T ss_pred --CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCC
Confidence 111111 235677777767777655 356677888899999999
No 489
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=86.42 E-value=2.6 Score=42.50 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=47.2
Q ss_pred HHHHHHhhhC---CCcEEEeccccCCCCCCCCccCCHHHHHHHHH----c--CCCCEEEECCCCcccHHHHHHCCCCCCc
Q 010244 411 PEEAHQAWID---GANYIGCGGVYPTNTKANNLTVGLDGLKTVCL----A--SKLPVVAIGGIGISNASDVMKIGVSNLK 481 (514)
Q Consensus 411 ~~e~~~a~~~---g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~----~--~~~pv~a~GGi~~~~~~~~~~~Ga~~~~ 481 (514)
.+++.++.+. |+|.|-+=..-+ -++.. .+.++++++ . -++.+.|.|||+++|+.++.+. ++
T Consensus 214 ~~~Al~~~~~~~~~~d~I~LDn~~~---~~g~l---~~~v~~vr~~ld~~g~~~v~IeaSGgI~~~ni~~ya~~-vD--- 283 (343)
T PRK08662 214 REEALRAAEALGDRLDGVRLDTPSS---RRGNF---RKIVREVRWTLDIRGYEHVKIFVSGGLDPERIRELRDV-VD--- 283 (343)
T ss_pred HHHHHHHHHHhCCcCCEEEcCCCCC---CCccH---HHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHh-CC---
Confidence 4666666655 899996643111 01111 122233332 1 1467999999999999999999 88
Q ss_pred eEEEeecccCC
Q 010244 482 GVAVVSALFDR 492 (514)
Q Consensus 482 gva~~~~i~~~ 492 (514)
.+++|+.++.+
T Consensus 284 ~isvGs~~~~a 294 (343)
T PRK08662 284 GFGVGTYISFA 294 (343)
T ss_pred EEEcCccccCC
Confidence 99999998853
No 490
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=86.13 E-value=11 Score=38.33 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHhCCCCE----EEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-------------CcHHHHHhCCCC
Q 010244 318 RSITDAVKAALEGGATI----IQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-------------DRIDIALACDAD 380 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~----v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-------------~~~~~a~~~ga~ 380 (514)
++..+.++.+.+.|.+. +++.+ -+..++.+..+++...|++.|..+++. ++++...++|.+
T Consensus 14 ~~~~~yi~~a~~~Gf~~iFTSL~ipe--~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~ 91 (357)
T PF05913_consen 14 EENKAYIEKAAKYGFKRIFTSLHIPE--DDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGID 91 (357)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-S
T ss_pred HHHHHHHHHHHHCCCCEEECCCCcCC--CCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCC
Confidence 45778899999999643 33333 334566777888889999999999863 245666778999
Q ss_pred eEEeCCCCCCHHHHHhhcCCCcEEEEecCC--HHHHHHhhhCCCc---EEEeccccCCCCCCCCccCCHHHHHHHHH---
Q 010244 381 GVHLGQSDMPARTARALLGPDKIIGVSCKT--PEEAHQAWIDGAN---YIGCGGVYPTNTKANNLTVGLDGLKTVCL--- 452 (514)
Q Consensus 381 gvhl~~~~~~~~~~~~~~~~~~~ig~s~~~--~~e~~~a~~~g~d---~v~~~~vf~t~~k~~~~~~g~~~l~~~~~--- 452 (514)
++=+..+-.....+.-... +..|...+.| .+++....+.|+| +..+.-+||-+ .++++++.+.+--+
T Consensus 92 ~lRlD~Gf~~~~ia~ls~n-g~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~----~TGLs~~~f~~~n~~~k 166 (357)
T PF05913_consen 92 GLRLDYGFSGEEIAKLSKN-GIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRP----YTGLSEEFFIEKNQLLK 166 (357)
T ss_dssp EEEESSS-SCHHHHHHTTT--SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-ST----T-SB-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHhC-CCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCC----CCCCCHHHHHHHHHHHH
Confidence 9988766544444443332 4777776665 5578888888885 67777777722 35577777765543
Q ss_pred cCCCCEEEE--CC-----------CCccc---------HHHHHHCC-CCCCceEEEeecccC
Q 010244 453 ASKLPVVAI--GG-----------IGISN---------ASDVMKIG-VSNLKGVAVVSALFD 491 (514)
Q Consensus 453 ~~~~pv~a~--GG-----------i~~~~---------~~~~~~~G-a~~~~gva~~~~i~~ 491 (514)
..++++.|- |- .|.|. +.++++.| ++ .|-+|....+
T Consensus 167 ~~gi~~~AFI~g~~~~rGPl~~GLPTlE~hR~~~p~~aa~~L~~~~~iD---~V~IGD~~~s 225 (357)
T PF05913_consen 167 EYGIKTAAFIPGDENKRGPLYEGLPTLEKHRNLPPYAAALELFALGLID---DVIIGDPFAS 225 (357)
T ss_dssp HTT-EEEEEE--SSS-BTTT-S--BSBGGGTTS-HHHHHHHHHHTTT-----EEEE-SC---
T ss_pred HCCCcEEEEecCCCcccCCccCCCCccHHHcCCCHHHHHHHHHhcCCCC---EEEECCCcCC
Confidence 346776553 32 13332 46777888 77 9998877664
No 491
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.12 E-value=7.8 Score=35.25 Aligned_cols=110 Identities=24% Similarity=0.225 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCC---CC--HHHHHHHHHHHHHHHhhcCceEEEcCc------HH-------HHHhCCC
Q 010244 318 RSITDAVKAALEGGATIIQLREKD---AD--TRGFLEAAKACLQICCVHGVPLLINDR------ID-------IALACDA 379 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~---~~--~~~~~~~~~~~~~~~~~~~~~l~v~~~------~~-------~a~~~ga 379 (514)
++..+.++.+.+.|++.+.+..+. .+ .++..+..+++.+.+ +.+.++++... .+ ++...|+
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 467788889999999999985432 12 344555555555544 35788776321 22 2346799
Q ss_pred CeEEeCCC------CCC-HHHHHhhcCC--CcEEEEecCCHHHHHHhhhCCCcEEEec
Q 010244 380 DGVHLGQS------DMP-ARTARALLGP--DKIIGVSCKTPEEAHQAWIDGANYIGCG 428 (514)
Q Consensus 380 ~gvhl~~~------~~~-~~~~~~~~~~--~~~ig~s~~~~~e~~~a~~~g~d~v~~~ 428 (514)
+++..... +.. ...+++..+. +..+.....+++.+..+...|+|-+++|
T Consensus 144 ~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 144 DFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99977665 322 2233333321 2232333345888999999999988654
No 492
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.88 E-value=10 Score=34.17 Aligned_cols=103 Identities=22% Similarity=0.189 Sum_probs=60.2
Q ss_pred HHHHHhCCCCEEEEEcCCCCH-HHHHHHHHHHHHHHhhcCceEEE----cCcHHH--HHhCCCCeEEeCCCCCC------
Q 010244 324 VKAALEGGATIIQLREKDADT-RGFLEAAKACLQICCVHGVPLLI----NDRIDI--ALACDADGVHLGQSDMP------ 390 (514)
Q Consensus 324 ~~~~~~~Gv~~v~lr~~~~~~-~~~~~~~~~~~~~~~~~~~~l~v----~~~~~~--a~~~ga~gvhl~~~~~~------ 390 (514)
...+.+.|.+.|++-...... +...+.++.+++.+ .+.++++ ....+. +.+.|++.+.+......
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~--~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~ 154 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV--PDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDA 154 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc--CCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccC
Confidence 356778899999998776542 22233444444332 1444432 222233 37789999877543221
Q ss_pred -------HHHHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEec
Q 010244 391 -------ARTARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCG 428 (514)
Q Consensus 391 -------~~~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~ 428 (514)
....+.......+..-...+++.+.++.+.|+|.+.+|
T Consensus 155 ~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 155 VPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred chhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 11122223334444445677899999999999999876
No 493
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=85.66 E-value=26 Score=35.49 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHcCCCCEEEECCCCcccHHHHHHCCCCCCceEEEe
Q 010244 441 TVGLDGLKTVCLASKLPVVAIGGIGISNASDVMKIGVSNLKGVAVV 486 (514)
Q Consensus 441 ~~g~~~l~~~~~~~~~pv~a~GGi~~~~~~~~~~~Ga~~~~gva~~ 486 (514)
.+.|+.++++++..++||++=|-.+++++..+.++|++ +|.+.
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d---~I~vs 249 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGAD---GIWVS 249 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCC---EEEEe
Confidence 46899999999988999998877778999999999999 99884
No 494
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=85.41 E-value=7 Score=36.10 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=58.5
Q ss_pred EEecCCHHHHHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEE----CC---CCc-------ccHH
Q 010244 405 GVSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAI----GG---IGI-------SNAS 470 (514)
Q Consensus 405 g~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~----GG---i~~-------~~~~ 470 (514)
=+.+.|++++..|.+.|||-|=+..-.. -.+ -......++.+++..++||+++ || -+. +++.
T Consensus 4 Evcv~s~~~a~~A~~~GAdRiELc~~l~---~GG-lTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~ 79 (201)
T PF03932_consen 4 EVCVESLEDALAAEAGGADRIELCSNLE---VGG-LTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIR 79 (201)
T ss_dssp EEEESSHHHHHHHHHTT-SEEEEEBTGG---GT--B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHcCCCEEEECCCcc---CCC-cCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHH
Confidence 3457899999999999999996643111 111 1234678888888889999988 66 232 3578
Q ss_pred HHHHCCCCCCceEEEeecccCCCCH-HHHHHHHHHH
Q 010244 471 DVMKIGVSNLKGVAVVSALFDRECI-LPESKKLHAV 505 (514)
Q Consensus 471 ~~~~~Ga~~~~gva~~~~i~~~~~~-~~~~~~~~~~ 505 (514)
.++++|++ ||.+| ++.....+ .++.++|.+.
T Consensus 80 ~~~~~Gad---G~VfG-~L~~dg~iD~~~~~~Li~~ 111 (201)
T PF03932_consen 80 MLRELGAD---GFVFG-ALTEDGEIDEEALEELIEA 111 (201)
T ss_dssp HHHHTT-S---EEEE---BETTSSB-HHHHHHHHHH
T ss_pred HHHHcCCC---eeEEE-eECCCCCcCHHHHHHHHHh
Confidence 89999999 99887 45544333 3445555544
No 495
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=85.33 E-value=3.6 Score=37.06 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHhhhCCCcEEEeccccCCCCCCCCccCCHHHHHHHHHcCCCCEEEECCCC-cccHHHHHHCCCCCCceEEEee
Q 010244 414 AHQAWIDGANYIGCGGVYPTNTKANNLTVGLDGLKTVCLASKLPVVAIGGIG-ISNASDVMKIGVSNLKGVAVVS 487 (514)
Q Consensus 414 ~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~~~l~~~~~~~~~pv~a~GGi~-~~~~~~~~~~Ga~~~~gva~~~ 487 (514)
++...+..+|+|=+.|- .-+..++++++..++|++|-|=|. .+++.+++++||. +|....
T Consensus 110 ~~~i~~~~PD~vEilPg-----------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~---aVSTS~ 170 (175)
T PF04309_consen 110 IKQIEQSKPDAVEILPG-----------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGAD---AVSTSN 170 (175)
T ss_dssp HHHHHHHT-SEEEEESC-----------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCE---EEEE--
T ss_pred HHHHhhcCCCEEEEchH-----------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCE---EEEcCC
Confidence 34445678999944441 234566777777799999988885 8899999999999 887654
No 496
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=85.17 E-value=12 Score=37.27 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHHHhhcCceEEEc-Cc---HHHHHhCCCCeEEeCCC-------C
Q 010244 320 ITDAVKAALEGGATIIQLREKDADTRGFLEAAKACLQICCVHGVPLLIN-DR---IDIALACDADGVHLGQS-------D 388 (514)
Q Consensus 320 ~~~~~~~~~~~Gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-~~---~~~a~~~ga~gvhl~~~-------~ 388 (514)
..+.++.+++.|+++|.+-.. .+.+ +++++ ++.|+.++.. .+ .+.+.+.|+|++.+... .
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g--~p~~---~i~~l----k~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG--NPGK---YIPRL----KENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC--CcHH---HHHHH----HHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCC
Confidence 446778889999999987432 2322 22333 3447766542 23 35667889999866221 1
Q ss_pred C-CHH---HHHhhcCCCcEEEEecCCHHHHHHhhhCCCcEEEeccccCC
Q 010244 389 M-PAR---TARALLGPDKIIGVSCKTPEEAHQAWIDGANYIGCGGVYPT 433 (514)
Q Consensus 389 ~-~~~---~~~~~~~~~~~ig~s~~~~~e~~~a~~~g~d~v~~~~vf~t 433 (514)
. ... ++++......+..-...+.+.+..+...|+|.|.+|..|-.
T Consensus 147 ~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 147 LTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred CcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 1 112 23333333444444577999999999999999999988864
No 497
>PRK06256 biotin synthase; Validated
Probab=85.12 E-value=44 Score=33.51 Aligned_cols=98 Identities=18% Similarity=0.101 Sum_probs=56.2
Q ss_pred CcEEEEecCCHHH----HHHhhhCCCcEEEeccccCCCCCC--CCccCCH-HHHHHHH--H-cC-CCCEEEECCCC--cc
Q 010244 401 DKIIGVSCKTPEE----AHQAWIDGANYIGCGGVYPTNTKA--NNLTVGL-DGLKTVC--L-AS-KLPVVAIGGIG--IS 467 (514)
Q Consensus 401 ~~~ig~s~~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~--~~~~~g~-~~l~~~~--~-~~-~~pv~a~GGi~--~~ 467 (514)
+.++|. ..|.++ +....+.++|.+.+.++.|.+..| ..++... +.++.++ . .+ +..|-..||=. ..
T Consensus 206 ~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~ 284 (336)
T PRK06256 206 GGIIGM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLR 284 (336)
T ss_pred CeEEeC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhch
Confidence 445665 345555 344557899999887766643322 1233333 4443332 1 12 56677777752 33
Q ss_pred cH-HHHHHCCCCCCceEEEeecccCCCCHHHHHHHHH
Q 010244 468 NA-SDVMKIGVSNLKGVAVVSALFDRECILPESKKLH 503 (514)
Q Consensus 468 ~~-~~~~~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~ 503 (514)
+. ...+ +||+ ++-+|..++....+...-.++.
T Consensus 285 ~~~~~~~-~g~~---~~~~g~~lt~~g~~~~~d~~~~ 317 (336)
T PRK06256 285 SLQPLGL-GGAN---SVIVGNYLTTVGQPATADLDMI 317 (336)
T ss_pred hhHHHHh-ccCc---eeeECCcccCCCCChHHHHHHH
Confidence 33 4455 7999 9999999987665544333333
No 498
>PRK02227 hypothetical protein; Provisional
Probab=84.98 E-value=14 Score=34.92 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=58.6
Q ss_pred EecCCHHHHHHhhhCCCcEEEeccccCCCCCCCC---ccCCHHHHHHHHHcC--CCCEEE-ECCCC--ccc----HHHHH
Q 010244 406 VSCKTPEEAHQAWIDGANYIGCGGVYPTNTKANN---LTVGLDGLKTVCLAS--KLPVVA-IGGIG--ISN----ASDVM 473 (514)
Q Consensus 406 ~s~~~~~e~~~a~~~g~d~v~~~~vf~t~~k~~~---~~~g~~~l~~~~~~~--~~pv~a-~GGi~--~~~----~~~~~ 473 (514)
+|+.|++|+..|.+.|+|+|=+ .. |.. ...-+.-+++++... ..||=| +|... +.. +...-
T Consensus 5 vSvr~~eEA~~Al~~GaDiIDv---K~----P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a 77 (238)
T PRK02227 5 VSVRNLEEALEALAGGADIIDV---KN----PKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAA 77 (238)
T ss_pred eccCCHHHHHHHHhcCCCEEEc---cC----CCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHH
Confidence 6899999999999999999933 22 222 223456777777766 488887 56554 333 33444
Q ss_pred HCCCCCCceEEEeecccCCCCHHHHHHHHHHHHH
Q 010244 474 KIGVSNLKGVAVVSALFDRECILPESKKLHAVLM 507 (514)
Q Consensus 474 ~~Ga~~~~gva~~~~i~~~~~~~~~~~~~~~~~~ 507 (514)
.+|++ .|=+| ++...+..+....+...++
T Consensus 78 ~~GvD---yVKvG--l~~~~~~~~~~~~~~~v~~ 106 (238)
T PRK02227 78 ATGAD---YVKVG--LYGGKTAEEAVEVMKAVVR 106 (238)
T ss_pred hhCCC---EEEEc--CCCCCcHHHHHHHHHHHHH
Confidence 57888 88776 4565666555555555443
No 499
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=84.98 E-value=33 Score=34.03 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=73.5
Q ss_pred HHHHHhCCC---CEEEEEcCCCCH---HHHHHHHHHHHHHHhhcCceEEEcCcHHHHHhCCCCeEEeCCCCCCHHHHHhh
Q 010244 324 VKAALEGGA---TIIQLREKDADT---RGFLEAAKACLQICCVHGVPLLINDRIDIALACDADGVHLGQSDMPARTARAL 397 (514)
Q Consensus 324 ~~~~~~~Gv---~~v~lr~~~~~~---~~~~~~~~~~~~~~~~~~~~l~v~~~~~~a~~~ga~gvhl~~~~~~~~~~~~~ 397 (514)
++++.+.|. +++.+-.++-++ +...++++++-..|+..++++++.-=. -... ..+....+..+.
T Consensus 113 ~~rike~GadavK~Llyy~pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~---Yd~~-------~~d~~~~eyak~ 182 (329)
T PRK04161 113 VKRLKEAGADAVKFLLYYDVDGDEEINDQKQAYIERIGSECTAEDIPFFLELLT---YDER-------ISDNNSAAYAKL 182 (329)
T ss_pred HHHHHHhCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec---cCCc-------ccccccHHHHhh
Confidence 334455564 455555555444 445667888989999999998873200 0000 000000111111
Q ss_pred cCCCcEEEEecCCHHHHHHhh---hCCCcEEEe-ccccCCC----CCCC-C-cc-CCHHHHHHHHHcCCCC-EEEECCCC
Q 010244 398 LGPDKIIGVSCKTPEEAHQAW---IDGANYIGC-GGVYPTN----TKAN-N-LT-VGLDGLKTVCLASKLP-VVAIGGIG 465 (514)
Q Consensus 398 ~~~~~~ig~s~~~~~e~~~a~---~~g~d~v~~-~~vf~t~----~k~~-~-~~-~g~~~l~~~~~~~~~p-v~a~GGi~ 465 (514)
.+.++ -++.+.. ..|+|..=+ .|+.... .+.. . +. --...+++.....++| ||..+|++
T Consensus 183 -kP~~V--------~~amkefs~~~~gvDVlKvEvPvn~~~veG~~~g~~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV~ 253 (329)
T PRK04161 183 -KPHKV--------NGAMKVFSDKRFGVDVLKVEVPVNMAYVEGFTEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVS 253 (329)
T ss_pred -ChHHH--------HHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 12222 1222222 478999833 1221100 0000 0 00 0114455555556899 66678999
Q ss_pred cccHHH----HHHCCC--CCCceEEEeecccC
Q 010244 466 ISNASD----VMKIGV--SNLKGVAVVSALFD 491 (514)
Q Consensus 466 ~~~~~~----~~~~Ga--~~~~gva~~~~i~~ 491 (514)
.+...+ +.++|+ . ||..|+++|.
T Consensus 254 ~~~F~~~l~~A~~aGa~fn---GvL~GRAtW~ 282 (329)
T PRK04161 254 AKLFQETLVFAAEAGAQFN---GVLCGRATWA 282 (329)
T ss_pred HHHHHHHHHHHHhcCCCcc---cEEeehhhhh
Confidence 776554 444554 6 9999999995
No 500
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=84.93 E-value=35 Score=33.09 Aligned_cols=155 Identities=11% Similarity=0.096 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHhCCCCEEEEEcCCCCHHHH--------HHHHHHHHHHHhhcCceE--EEc------CcHHHHHhCCCCe
Q 010244 318 RSITDAVKAALEGGATIIQLREKDADTRGF--------LEAAKACLQICCVHGVPL--LIN------DRIDIALACDADG 381 (514)
Q Consensus 318 ~~~~~~~~~~~~~Gv~~v~lr~~~~~~~~~--------~~~~~~~~~~~~~~~~~l--~v~------~~~~~a~~~ga~g 381 (514)
++..++++.+-+.|++.|++-.+..+..+. .+..+++.+... .+.++ ++. ++++.+.+.|.+.
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~~gv~~ 98 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASGSVVDM 98 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhcCCcCE
Confidence 456777888889999999998765543210 233344443322 12333 221 3466778889999
Q ss_pred EEeCCCCCCHHHH----Hh--hcCCCcEEE---EecCCHHH----HHHhhhCCCcEEEeccccCCCCCCCCccCCH-HHH
Q 010244 382 VHLGQSDMPARTA----RA--LLGPDKIIG---VSCKTPEE----AHQAWIDGANYIGCGGVYPTNTKANNLTVGL-DGL 447 (514)
Q Consensus 382 vhl~~~~~~~~~~----~~--~~~~~~~ig---~s~~~~~e----~~~a~~~g~d~v~~~~vf~t~~k~~~~~~g~-~~l 447 (514)
+|+.......... +. ..+....++ .+-+++++ ++++.+.|+|.+.+. +|. ....|... +.+
T Consensus 99 iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~---DT~--G~~~P~~v~~lv 173 (266)
T cd07944 99 IRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV---DSF--GSMYPEDIKRII 173 (266)
T ss_pred EEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe---cCC--CCCCHHHHHHHH
Confidence 9887544332222 21 223332333 23356665 456678899999553 221 11222222 556
Q ss_pred HHHHHcCC--CCEEEECC----CCcccHHHHHHCCCC
Q 010244 448 KTVCLASK--LPVVAIGG----IGISNASDVMKIGVS 478 (514)
Q Consensus 448 ~~~~~~~~--~pv~a~GG----i~~~~~~~~~~~Ga~ 478 (514)
+.+++.++ +|+-.=+- ....|.-..+++|++
T Consensus 174 ~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~ 210 (266)
T cd07944 174 SLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVE 210 (266)
T ss_pred HHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCC
Confidence 66666665 66644332 334577788899998
Done!