Citrus Sinensis ID: 010245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE
Secondary Structure (PSIPRED)
ccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEHHHHHccccHHHHHHHHHHHHHHccccEEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccccEEEcccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHccccccccccccEEEEccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEEEEcccccEEEcccccccccccccccccccccccccccEEEEEEccccccccccccEEccccccHHHHHHHHHHHHHcccEEEHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccccEEEEccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccEEEEccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccEEEHHHHcHHcccccccccHcccHHHHEEccccccccccccEEEEccHHHHHHHHHccccHHHccccccccccccHHHHHccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtsistcftttpksrffftplrpsinlkppdsfpriqplpfprisgkipgsrvlvpvakastdvavgvgpgrivesdklpadVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADtdgflevsdegdvlyvfpnnyraKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILssksddddrgrrrrsfdsgfnifispsdlfwywdpyyyrrrrvqtddddkkmNFIKSVFSFvfgegdpnqgieEKRWKLIGEYIAsnggvvtaeelapyldidrtmsdesyvlpvllrfdgqpeideegnilyrfpsfqrtaASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQemavtpngFLKFVAYIFPLLQiyagsffaiPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKtfigqdrivysTDRDLIEQDYEAREWEKRFREIE
Flexible Loop (DISEMBL)
mtsistcftttpksrffftplrpsinlkppdsfPRIQPLPFPRISGKIPGSRVLVPVAKAStdvavgvgpgrivesdklpadVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAIlssksddddrgrrrrsfdsgfnifispsdlfwywdpYYYRRRRvqtddddkkMNFIKSVFsfvfgegdpnqGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEgnilyrfpsfqrtaasqrigrkeyvgrrwadaiggvekifrekkwefskTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRnadiekrnrtrekyaralkspdislrRKLLSARDMaqktfigqdrivystdrDLIEQDYEAREWEKRFREIE
Low Complexity Region (SEG)
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILssksddddrgrrrrsfdsgfNIFISPSDLFWYWDPyyyrrrrVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE
Disordered region (IsUnstruct)
******CFTTTPKSRFFFTPLR****************LPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAIL****************DSGFNIFISPSDLFWYWDPYYYRR*************FIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADI************************LLSARDMAQKTFIGQDRIVYSTDRDLIEQDY*************
Disordered Region (DISOPRED)
*****TCFTTTPKSRF*********************************************************************RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAII***********************NIFISPSDLFWYWDP*********************SVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSF***************************************TNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIE**NRTREKYARALKSPDISL***************IGQDRIVYSTDRDLIEQDYEAREW*KRF****
Disordered Region (DISEMBL)
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSS**********RRSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE
Disordered Region (DISPRO)
*TSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSK************FDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQR**RKEYV*RRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFR***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDIDRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q8GW20	523	Uncharacterized protein A	yes	no	0.988	0.971	0.631	0.0

>sp|Q8GW20|Y5390_ARATH Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=1 SV=2

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/526 (63%), Positives = 413/526 (78%), Gaps = 18/526 (3%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
           APYLD+  +   M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R  RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355

Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
           VG+ W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct: 356 VGK-WFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query: 409 GFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLR 468
           GFL FV  I+PLLQIYAGSFF IP +RWF   ++N  IE RN+ R ++ARAL+SPDI+LR
Sbjct: 415 GFLTFVKNIYPLLQIYAGSFFTIPLIRWFSIKRKNNQIENRNKARLQFARALESPDIALR 474

Query: 469 RKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           RKLLSARDMAQKT IG+DRIVYSTDRD++EQ+YE  EW++RF+E+E
Sbjct: 475 RKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELE 520

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
255575701	514	conserved hypothetical protein [Ricinus	0.984	0.984	0.720	0.0
449462964	516	PREDICTED: uncharacterized protein At5g0	0.988	0.984	0.712	0.0
225440882	495	PREDICTED: uncharacterized protein At5g0	0.896	0.931	0.751	0.0
357503799	507	hypothetical protein MTR_7g030010 [Medic	0.964	0.978	0.693	0.0
356537645	505	PREDICTED: uncharacterized protein At5g0	0.964	0.982	0.680	0.0
312283379	523	unnamed protein product [Thellungiella h	0.992	0.975	0.635	0.0
356495901	500	PREDICTED: uncharacterized protein At5g0	0.949	0.976	0.682	0.0
297740116	432	unnamed protein product [Vitis vinifera]	0.826	0.983	0.763	0.0
21536751	523	unknown [Arabidopsis thaliana]	0.988	0.971	0.633	0.0
18414392	523	Iron-sulfur assembly-like protein [Arabi	0.988	0.971	0.631	0.0

>gi|255575701|ref|XP_002528750.1| conserved hypothetical protein [Ricinus communis] gi|223531844|gb|EEF33662.1| conserved hypothetical protein [Ricinus communis]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/519 (72%), Positives = 436/519 (84%), Gaps = 13/519 (2%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIPGSRVLV-PVAK 59
           M SISTCFT +PK+R   T  +PS  LKPPDSF +I      R+S K+   RV    V +
Sbjct: 1   MASISTCFTISPKTRIILTS-KPSCRLKPPDSFTKI------RLSPKLSDPRVYRGSVIR 53

Query: 60  ASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119
           A  D+  G+ PG  VESDKL ADVR RAM+AVDA   RVTIGDVA KAGLKLNEAQKALQ
Sbjct: 54  AGIDLPSGIKPGGAVESDKLRADVRKRAMEAVDAFGGRVTIGDVASKAGLKLNEAQKALQ 113

Query: 120 ALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGT 179
           ALAADT+GFLEVSDEGDVLY FP +YR+KLAAKSF++KVEP++DKAKA  EY IRV FGT
Sbjct: 114 ALAADTNGFLEVSDEGDVLYAFPKDYRSKLAAKSFKMKVEPLVDKAKATGEYLIRVSFGT 173

Query: 180 ALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYYRRRR 238
           ALIASIV+V+T IIA+LSS+S++D+RGRR  RS+DSGF  + SP+DLFWYWDPYYYRRR+
Sbjct: 174 ALIASIVLVYTTIIALLSSRSEEDNRGRRGGRSYDSGFTFYFSPTDLFWYWDPYYYRRRQ 233

Query: 239 VQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLDI 298
           ++ DDDDK MNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YI+SNGGVV AEELAP+LD+
Sbjct: 234 IKKDDDDK-MNFIESVFSFVFGDGDPNQGIEEERWKLIGQYISSNGGVVAAEELAPFLDL 292

Query: 299 ---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWAD 355
              D+  +DESY+LPVLLRFDGQPEIDEE  ILYRFPS QRTA+SQR GRKEY+GRRW D
Sbjct: 293 QTTDKNTNDESYILPVLLRFDGQPEIDEEETILYRFPSLQRTASSQRSGRKEYIGRRWTD 352

Query: 356 AIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVA 415
            +GGVEK FRE+KWEFSKT  SER M IGLGG+NLFGVI+LGAML+++A  P G + FVA
Sbjct: 353 WVGGVEKFFRERKWEFSKTGASERAMVIGLGGINLFGVIVLGAMLKDIAAMPGGLINFVA 412

Query: 416 YIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSAR 475
            IFPLLQ+YAGSFFAIP +RWFL  QRNA IEKRN+ RE++ARAL+ PD SLRRKLLSAR
Sbjct: 413 GIFPLLQVYAGSFFAIPLIRWFLIRQRNAQIEKRNQAREQFARALELPDPSLRRKLLSAR 472

Query: 476 DMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           DM+Q+TFIGQDRIVYSTDRD+IEQD EA+EW++RFREIE
Sbjct: 473 DMSQRTFIGQDRIVYSTDRDIIEQDVEAQEWDRRFREIE 511

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462964|ref|XP_004149205.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Cucumis sativus] gi|449500907|ref|XP_004161226.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Cucumis sativus]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/519 (71%), Positives = 441/519 (84%), Gaps = 11/519 (2%)

Query: 1   MTSISTCFTTTPKSRFFFTPL---RPSINLKPPD-SFPRIQPLPFPRISGKIPGSRVLVP 56
           M SIST F  +  SR +F PL   +PSI +KP   +FP    LP  RI+     +R  VP
Sbjct: 1   MASISTYFAISQSSRLYFHPLITLKPSICVKPSTITFP---ALP-TRIAPPESRARGFVP 56

Query: 57  VAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116
             +A  D+   + PG +VESDKLP+DVR R M+AV+AC  RVTIGDVA +AGLKLNEAQK
Sbjct: 57  TVRAGIDIPSDIRPGNVVESDKLPSDVRKRTMEAVEACGGRVTIGDVASRAGLKLNEAQK 116

Query: 117 ALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVL 176
           ALQALAADTDGFLEVSDEGDVLYVFP +YR+KLAAKSF +K EP+I+K+KAAAEY +RV 
Sbjct: 117 ALQALAADTDGFLEVSDEGDVLYVFPKDYRSKLAAKSFWIKFEPLIEKSKAAAEYLVRVS 176

Query: 177 FGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRR 236
           FGTALIASIV+V+T IIA++SS+S++D+RGRR RS+DSGF  ++SP+DLFWYWDPYYYRR
Sbjct: 177 FGTALIASIVLVYTTIIALISSRSEEDNRGRRSRSYDSGFTFYLSPTDLFWYWDPYYYRR 236

Query: 237 RRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYL 296
           RR+QT+D+  KMNFI+S+FSFVFG+GDPNQGIEE+RWKLIG+YI+SNGGVV AEELAPYL
Sbjct: 237 RRLQTEDN--KMNFIESIFSFVFGDGDPNQGIEEERWKLIGQYISSNGGVVAAEELAPYL 294

Query: 297 DI-DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWAD 355
           D+ +R   DESY+LPVLLRFDGQPEIDEEGNILYRFPS QRTA+SQR GRKEYVGR+WAD
Sbjct: 295 DVSERNTDDESYILPVLLRFDGQPEIDEEGNILYRFPSLQRTASSQRSGRKEYVGRKWAD 354

Query: 356 AIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFVA 415
            +GG+EKIF+EKKW FSKT+ SER MAIGLGGLNLFGVI+LGAML+++AV P+G +KFV+
Sbjct: 355 WVGGIEKIFKEKKWVFSKTSNSERAMAIGLGGLNLFGVIVLGAMLKDVAVKPSGLIKFVS 414

Query: 416 YIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSAR 475
            IFPLLQIYAGSFF IP VRWF+  +RNA+I KRN  R+K A+AL+ PD++LRRKLLSAR
Sbjct: 415 DIFPLLQIYAGSFFTIPLVRWFIVQKRNAEIGKRNEARQKRAQALELPDVTLRRKLLSAR 474

Query: 476 DMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           DMAQKT IGQDRIVYSTDRDLIEQ+YE +EWE++FREIE
Sbjct: 475 DMAQKTVIGQDRIVYSTDRDLIEQNYELQEWERKFREIE 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440882|ref|XP_002276711.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Vitis vinifera]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/467 (75%), Positives = 410/467 (87%), Gaps = 6/467 (1%)

Query: 52  RVLVPVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKL 111
           +V VPV +A  DVA G+ PG IVE+DKLP++VR RAMDAVDAC  RVTIGDVA K GLKL
Sbjct: 28  QVFVPVVRAGLDVASGIRPGGIVETDKLPSNVRKRAMDAVDACGGRVTIGDVASKGGLKL 87

Query: 112 NEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEY 171
           NEAQKALQALAADT+GFLEVSDEGDVLYVFP +YR+KLAAKSFR+K+EP ++KAK+AAEY
Sbjct: 88  NEAQKALQALAADTNGFLEVSDEGDVLYVFPKDYRSKLAAKSFRIKLEPFVEKAKSAAEY 147

Query: 172 SIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWD 230
            +RV FGTALIASIV+V+T IIA+LSS+SD+D+RGRR  RS+DSGF  +++P+DLFWYWD
Sbjct: 148 LVRVSFGTALIASIVLVYTTIIALLSSRSDEDNRGRRGGRSYDSGFTFYLNPADLFWYWD 207

Query: 231 PYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAE 290
           PYYYRRRR+Q +DD   MNFI+SVFSFVFG+GDPNQGIE++RWKLIG+YI+SNGGVVTAE
Sbjct: 208 PYYYRRRRIQKEDD--GMNFIESVFSFVFGDGDPNQGIEDERWKLIGQYISSNGGVVTAE 265

Query: 291 ELAPYLDI---DRTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKE 347
           ELAPYLD+   D  + DESY+LPVLLRF+GQPE+DEEGNILYRFPS QRTA+SQR GRKE
Sbjct: 266 ELAPYLDLETADNNLVDESYILPVLLRFEGQPEVDEEGNILYRFPSLQRTASSQRSGRKE 325

Query: 348 YVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTP 407
           YVG+RW D +GGVEK F+EKKW+FSKT+ SER M IGLGGLNLFGVIILG ML+ +AVTP
Sbjct: 326 YVGKRWTDWVGGVEKFFKEKKWQFSKTSNSERAMVIGLGGLNLFGVIILGTMLKNVAVTP 385

Query: 408 NGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISL 467
           +GF+ FV+ IFPLLQIYAGSFFAIP  RWFL   +NA IEKRN  RE  ARAL+ PD+SL
Sbjct: 386 SGFITFVSDIFPLLQIYAGSFFAIPLTRWFLIRNKNAKIEKRNLARELRARALELPDLSL 445

Query: 468 RRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           RRKLLSARDMAQ+T IGQDRIVYSTDRDL EQDY+ ++W++RFREIE
Sbjct: 446 RRKLLSARDMAQRTVIGQDRIVYSTDRDLFEQDYDTQDWDQRFREIE 492

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503799|ref|XP_003622188.1| hypothetical protein MTR_7g030010 [Medicago truncatula] gi|355497203|gb|AES78406.1| hypothetical protein MTR_7g030010 [Medicago truncatula]

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/522 (69%), Positives = 421/522 (80%), Gaps = 26/522 (4%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFP---RISGKIPGSRVLVPV 57
           M +I TCF  TP SR         +    P   P  +P  FP   RI+ +  G  ++VP 
Sbjct: 1   MATIPTCFAITPTSRL--------LTFTAP---PFHKPFIFPQNRRINKR--GWALVVP- 46

Query: 58  AKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKA 117
            +A+ DV  G+ PG +VESDKL +DVR R MDAVD C  RVT+GDVA +AGLKLNEAQKA
Sbjct: 47  -RAAVDVGRGIRPGGVVESDKLSSDVRKRTMDAVDGCGGRVTVGDVASRAGLKLNEAQKA 105

Query: 118 LQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLF 177
           LQALAADTDGFLEVS+EGDVLYVFP NYR+KL AKSFR+K EP I+KAK A EY IRV F
Sbjct: 106 LQALAADTDGFLEVSEEGDVLYVFPKNYRSKLGAKSFRIKAEPFIEKAKGAGEYLIRVSF 165

Query: 178 GTALIASIVIVFTAIIAIL-SSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYYR 235
           GTALIASIVIV+TAIIA++ SS+S+DD+RGRR  RS+DSGFN + +P DLFWYWDPYY R
Sbjct: 166 GTALIASIVIVYTAIIALVTSSRSEDDNRGRRGGRSYDSGFNFYFNPVDLFWYWDPYYNR 225

Query: 236 RRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPY 295
           RRRVQ DD+  K NFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YIASNGGVV AEELAPY
Sbjct: 226 RRRVQVDDN--KTNFIESVFSFVFGDGDPNQGIEEERWKLIGQYIASNGGVVAAEELAPY 283

Query: 296 LDID---RTMSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRR 352
           LDID   R   DESY+LPVLLRFDGQP +DEEGNILYRFPS QRTA SQ+  RKEYVG+R
Sbjct: 284 LDIDSTERIKDDESYILPVLLRFDGQPVVDEEGNILYRFPSLQRTA-SQKSKRKEYVGKR 342

Query: 353 WADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLK 412
           WAD +GGVEK F EK+W+FSKT+ SER M +GLGGLNLFGVI+LG ML+E+AV P+ F+K
Sbjct: 343 WADWVGGVEKFFEEKRWQFSKTSSSERAMVVGLGGLNLFGVIVLGTMLKEVAVRPDSFIK 402

Query: 413 FVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLL 472
           FVA IFPLLQIYAGSFFAIP VRWF   +RNADIEKRN+ R++ AR L+ PDISL +KL 
Sbjct: 403 FVADIFPLLQIYAGSFFAIPLVRWFFVRKRNADIEKRNQARQQCARVLELPDISLTQKLF 462

Query: 473 SARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           SARDMAQKT IGQD+IVYSTD+D ++QDYEA EW+K+FRE+E
Sbjct: 463 SARDMAQKTVIGQDQIVYSTDKDFLDQDYEANEWDKKFRELE 504

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537645|ref|XP_003537336.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Glycine max]

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/520 (68%), Positives = 414/520 (79%), Gaps = 24/520 (4%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLP-FPRISGKIPGSRVLVPVAK 59
           M SISTC T TP  R     L  S   K   +FP +Q  P    ++ ++  SRVLV    
Sbjct: 1   MASISTCITVTPTCRLARRLL--SFTSKQAIAFPSVQQNPVIGGVTKRVWDSRVLV---- 54

Query: 60  ASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119
                    GPG  VE+DKLP+DVR R MDAVD C  R+TIGDVA +AGL LN+AQKALQ
Sbjct: 55  --------AGPGGAVETDKLPSDVRKRTMDAVDECGGRMTIGDVASRAGLNLNQAQKALQ 106

Query: 120 ALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGT 179
           ALAADT+GFLEVS+EGDVLYVFP +YR++L AKSFR+K EP  +KAKAA EY IRV FGT
Sbjct: 107 ALAADTNGFLEVSEEGDVLYVFPKDYRSRLGAKSFRIKAEPFFEKAKAAGEYFIRVSFGT 166

Query: 180 ALIASIVIVFTAIIAIL-SSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYYRRR 237
           ALIASIVIV+T IIA++ SS+S++D+RGRR  RS+DSGF  + +P DLFWYWDPYYYRR+
Sbjct: 167 ALIASIVIVYTTIIALVTSSRSEEDNRGRRGGRSYDSGFTFYFNPVDLFWYWDPYYYRRQ 226

Query: 238 RVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAPYLD 297
           R Q DDD  KMNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YIASNGGVV AEELAPYLD
Sbjct: 227 RPQADDD--KMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYIASNGGVVAAEELAPYLD 284

Query: 298 IDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGRRWA 354
           ID T     DESY+LPVLLRFDGQPE+DEEGNILYRFPS Q T ASQ+  RKEYVGRRWA
Sbjct: 285 IDSTEGIKDDESYILPVLLRFDGQPEVDEEGNILYRFPSLQ-TTASQKSKRKEYVGRRWA 343

Query: 355 DAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLKFV 414
           D +G +EK F+EKKW+FS T  SER M IGLGGLNLFGVIILG ML++ AV P+ F+KFV
Sbjct: 344 DWVG-IEKFFKEKKWQFSITGTSERAMVIGLGGLNLFGVIILGTMLKDTAVAPSSFIKFV 402

Query: 415 AYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKLLSA 474
           A IFPLLQIYAGSFFAIP VRWF   ++NADIEKRN+ R++ A+ L+ PD SLR+KL SA
Sbjct: 403 ADIFPLLQIYAGSFFAIPLVRWFFIRKKNADIEKRNKARQQCAQVLELPDTSLRQKLFSA 462

Query: 475 RDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           RDMA+KT IGQD+IVYSTD+DL+EQ+YEAREW+K+FRE+E
Sbjct: 463 RDMAEKTVIGQDQIVYSTDKDLLEQEYEAREWDKKFRELE 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283379|dbj|BAJ34555.1| unnamed protein product [Thellungiella halophila]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/524 (63%), Positives = 411/524 (78%), Gaps = 14/524 (2%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRPSINLKPP----DSFPRIQPLPFPRISGKIPGSRVLV 55
           MT +STC   +PK ++  F+  +P I L+ P     +FP I    FP    +     + V
Sbjct: 1   MTCVSTCLIVSPKLTQSGFSSKKPVIRLRSPVDRCYAFPGIFTKRFPSSRREFTSHGIAV 60

Query: 56  PVAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQ 115
             A +   V+  +  G +VESDKLP DVR RAM+AVD C RRVT+GDVA +AGLK+ EAQ
Sbjct: 61  VRAASIDKVSGAIKLGGLVESDKLPTDVRKRAMEAVDECGRRVTVGDVASRAGLKVTEAQ 120

Query: 116 KALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRV 175
           KALQA+AADTDGFLEVSDEGDVLYVFP +YR+KLA KS R+++EP ++KAK A +Y  RV
Sbjct: 121 KALQAIAADTDGFLEVSDEGDVLYVFPRDYRSKLATKSLRIQIEPFLEKAKGAVDYLTRV 180

Query: 176 LFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYY 234
            FGTALIASIVIV+T II +LSS+S+DD+R RRR R +DSGFN FI+P DLFWYWDP YY
Sbjct: 181 SFGTALIASIVIVYTTIIVLLSSRSEDDNRQRRRGRGYDSGFNFFINPVDLFWYWDPNYY 240

Query: 235 RRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAP 294
            RRR + +D+ K MNFI+SVFSFVFG+GDPN+G EE+RW++IG YI S GGVV A+ELAP
Sbjct: 241 SRRRAR-EDEGKGMNFIESVFSFVFGDGDPNEGTEEERWQMIGRYITSRGGVVAADELAP 299

Query: 295 YLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEYVG 350
           YLD+  +    SDESY+LPVLLRFDGQPE+DEEGNILYRFPS QRTA+ S R  +KEYVG
Sbjct: 300 YLDVPSSKSDTSDESYILPVLLRFDGQPELDEEGNILYRFPSLQRTASGSSR--KKEYVG 357

Query: 351 RRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGF 410
           + W D +  +EK F+E+KW+FSKT+ SER M +GLG +NLFGVI+L AML+EMAVTP+GF
Sbjct: 358 K-WFDWVADMEKFFKERKWQFSKTSSSERAMVVGLGAVNLFGVIVLNAMLKEMAVTPSGF 416

Query: 411 LKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRK 470
           L FV  I+PLLQ+YAGSFFAIP VRWF   ++N  IE RN+ R ++ARAL+SPDI+LRRK
Sbjct: 417 LTFVKNIYPLLQVYAGSFFAIPLVRWFSVKRKNDQIENRNKARLQFARALESPDIALRRK 476

Query: 471 LLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           LLSARDMAQ T IG++RIVYSTDRD++EQDYEA EW++RFRE+E
Sbjct: 477 LLSARDMAQNTVIGKERIVYSTDRDMLEQDYEADEWDRRFREVE 520

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495901|ref|XP_003516809.1| PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Glycine max]

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/523 (68%), Positives = 411/523 (78%), Gaps = 35/523 (6%)

Query: 1   MTSISTCFTTTPKSRFFFTPLRPSINLKPPDSFPRIQPLPFPRISGKIP----GSRVLVP 56
           M S+STC T  P       P R         SF   QP+  P + G +P     SRVLV 
Sbjct: 1   MASMSTCITVIPTCGL---PRRLL-------SFTPKQPISLPCVIGGVPKRVWDSRVLV- 49

Query: 57  VAKASTDVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116
                        PG  VESDKLP+DVR R MDAVD C  RVTIGDVA +AGL LN+AQK
Sbjct: 50  -----------ARPGGAVESDKLPSDVRKRTMDAVDGCGGRVTIGDVASRAGLNLNQAQK 98

Query: 117 ALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSIRVL 176
           ALQALAAD DGFLEVS EGDVLYVFP +YR++L AKSFR+K EP  +KAKAA EY IRV 
Sbjct: 99  ALQALAADADGFLEVSGEGDVLYVFPKDYRSRLGAKSFRIKAEPFFEKAKAAGEYLIRVS 158

Query: 177 FGTALIASIVIVFTAIIAIL-SSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPYYY 234
           FGTALIASIVIV+T IIA++ SS+S++D+RGRR  RS+DSGF  + +P DLFWYWDPYYY
Sbjct: 159 FGTALIASIVIVYTTIIALVTSSRSEEDNRGRRGGRSYDSGFTFYFNPVDLFWYWDPYYY 218

Query: 235 RRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEELAP 294
           RRRR+Q DDD  KMNFI+SVFSFVFG+GDPNQGIEE+RWKLIG+YIASNGGVV AEELAP
Sbjct: 219 RRRRLQADDD--KMNFIESVFSFVFGDGDPNQGIEEERWKLIGQYIASNGGVVAAEELAP 276

Query: 295 YLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAASQRIGRKEYVGR 351
           YLDID T     DESY+LPVLLRFDGQP++DEEGNILYRFPS QRTA SQ+  RKEYVGR
Sbjct: 277 YLDIDSTEGIKDDESYILPVLLRFDGQPDVDEEGNILYRFPSLQRTA-SQKSKRKEYVGR 335

Query: 352 RWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFL 411
           RWAD +G +EK F+EKKW+FSKT   ER M IGLGGLNLFGVIILG ML++MAV P+ F+
Sbjct: 336 RWADWVG-IEKFFKEKKWQFSKTGTPERAMVIGLGGLNLFGVIILGTMLKDMAVAPSSFI 394

Query: 412 KFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLRRKL 471
           KFVA IFPLLQIYAGSFFAIP VRWF   ++NADIEKRN+ R++ A+ L+ PD SLR+KL
Sbjct: 395 KFVADIFPLLQIYAGSFFAIPLVRWFFIRKKNADIEKRNKARQQCAQVLELPDTSLRQKL 454

Query: 472 LSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
            SARDMAQKT IGQD+IVYSTD+DL+EQ+YEAREW+K+FRE+E
Sbjct: 455 FSARDMAQKTVIGQDQIVYSTDKDLLEQEYEAREWDKKFRELE 497

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740116|emb|CBI30298.3| unnamed protein product [Vitis vinifera]

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/431 (76%), Positives = 382/431 (88%), Gaps = 6/431 (1%)

Query: 88  MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147
           MDAVDAC  RVTIGDVA K GLKLNEAQKALQALAADT+GFLEVSDEGDVLYVFP +YR+
Sbjct: 1   MDAVDACGGRVTIGDVASKGGLKLNEAQKALQALAADTNGFLEVSDEGDVLYVFPKDYRS 60

Query: 148 KLAAKSFRLKVEPVIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGR 207
           KLAAKSFR+K+EP ++KAK+AAEY +RV FGTALIASIV+V+T IIA+LSS+SD+D+RGR
Sbjct: 61  KLAAKSFRIKLEPFVEKAKSAAEYLVRVSFGTALIASIVLVYTTIIALLSSRSDEDNRGR 120

Query: 208 RR-RSFDSGFNIFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQ 266
           R  RS+DSGF  +++P+DLFWYWDPYYYRRRR+Q +DD   MNFI+SVFSFVFG+GDPNQ
Sbjct: 121 RGGRSYDSGFTFYLNPADLFWYWDPYYYRRRRIQKEDD--GMNFIESVFSFVFGDGDPNQ 178

Query: 267 GIEEKRWKLIGEYIASNGGVVTAEELAPYLDI---DRTMSDESYVLPVLLRFDGQPEIDE 323
           GIE++RWKLIG+YI+SNGGVVTAEELAPYLD+   D  + DESY+LPVLLRF+GQPE+DE
Sbjct: 179 GIEDERWKLIGQYISSNGGVVTAEELAPYLDLETADNNLVDESYILPVLLRFEGQPEVDE 238

Query: 324 EGNILYRFPSFQRTAASQRIGRKEYVGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAI 383
           EGNILYRFPS QRTA+SQR GRKEYVG+RW D +GGVEK F+EKKW+FSKT+ SER M I
Sbjct: 239 EGNILYRFPSLQRTASSQRSGRKEYVGKRWTDWVGGVEKFFKEKKWQFSKTSNSERAMVI 298

Query: 384 GLGGLNLFGVIILGAMLQEMAVTPNGFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRN 443
           GLGGLNLFGVIILG ML+ +AVTP+GF+ FV+ IFPLLQIYAGSFFAIP  RWFL   +N
Sbjct: 299 GLGGLNLFGVIILGTMLKNVAVTPSGFITFVSDIFPLLQIYAGSFFAIPLTRWFLIRNKN 358

Query: 444 ADIEKRNRTREKYARALKSPDISLRRKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEA 503
           A IEKRN  RE  ARAL+ PD+SLRRKLLSARDMAQ+T IGQDRIVYSTDRDL EQDY+ 
Sbjct: 359 AKIEKRNLARELRARALELPDLSLRRKLLSARDMAQRTVIGQDRIVYSTDRDLFEQDYDT 418

Query: 504 REWEKRFREIE 514
           ++W++RFREIE
Sbjct: 419 QDWDQRFREIE 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536751|gb|AAM61083.1| unknown [Arabidopsis thaliana]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/526 (63%), Positives = 414/526 (78%), Gaps = 18/526 (3%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
           APYLD+  +   M+DESY+LPVLLRFDGQPE+DEEGNILYRFPS QRTA+ S R  RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYRFPSLQRTASGSSR--RKEY 355

Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
           VG+ W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct: 356 VGK-WFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query: 409 GFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLR 468
           GFL FV  I+PLLQIYAGSFF IP +RWF   ++N  IE RN+ R ++ARAL+SPDI+LR
Sbjct: 415 GFLTFVKNIYPLLQIYAGSFFTIPLIRWFSIKRKNNQIENRNKARLQFARALESPDIALR 474

Query: 469 RKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           RKLLSARDMAQKT IG+DRIVYSTDRD++EQ+YE  EW++RF+E+E
Sbjct: 475 RKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELE 520

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414392|ref|NP_568129.1| Iron-sulfur assembly-like protein [Arabidopsis thaliana] gi|88909724|sp|Q8GW20.2|Y5390_ARATH RecName: Full=Uncharacterized protein At5g03900, chloroplastic; Flags: Precursor gi|332003286|gb|AED90669.1| Iron-sulfur assembly-like protein [Arabidopsis thaliana]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/526 (63%), Positives = 413/526 (78%), Gaps = 18/526 (3%)

Query: 1   MTSISTCFTTTPK-SRFFFTPLRP-SINLKPP---DSFPRIQPLPFPRISGKIPGSRVLV 55
           M  +STC   +P+ ++   +  +P  I L+ P    SFPR+  L    +S +   +R  +
Sbjct: 1   MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query: 56  PVAKAST--DVAVGVGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
            V KA++   V+  + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct: 59  AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query: 114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
           AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct: 119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query: 174 RVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRR-RSFDSGFNIFISPSDLFWYWDPY 232
           RV FGTALIASIVIV+T+IIA+LSSKS+DD+R RRR RS+DSGFN +I+P DL WYWDP 
Sbjct: 179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query: 233 YYRRRRVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
           YY RRR + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct: 239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query: 293 APYLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
           APYLD+  +   M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R  RKEY
Sbjct: 298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355

Query: 349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
           VG+ W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct: 356 VGK-WFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query: 409 GFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLR 468
           GFL FV  I+PLLQIYAGSFF IP +RWF   ++N  IE RN+ R ++ARAL+SPDI+LR
Sbjct: 415 GFLTFVKNIYPLLQIYAGSFFTIPLIRWFSIKRKNNQIENRNKARLQFARALESPDIALR 474

Query: 469 RKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
           RKLLSARDMAQKT IG+DRIVYSTDRD++EQ+YE  EW++RF+E+E
Sbjct: 475 RKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELE 520

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2150560	523	AT5G03900 "AT5G03900" [Arabido	0.988	0.971	0.596	3.3e-157

TAIR|locus:2150560 AT5G03900 "AT5G03900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
 Identities = 314/526 (59%), Positives = 389/526 (73%)

Query:     1 MTSISTCFTTTPK-SRFFFTPLRPS-INLKPP-D--SFPRIQPLPFPRISGKIPGSRVLV 55
             M  +STC   +P+ ++   +  +P  I L+ P D  SFPR+  L    +S +   +R  +
Sbjct:     1 MACVSTCLILSPRLTQVGLSSKKPFLIRLRSPVDRYSFPRM--LTERCLSTRRKFNRHGI 58

Query:    56 PVAKA-STDVAVG-VGPGRIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNE 113
              V KA S D   G + PG +VESDKLP DVR RAMDAVD C RRVT+GDVA + GLK+ E
Sbjct:    59 AVVKAASLDKVSGAIKPGGLVESDKLPTDVRKRAMDAVDECGRRVTVGDVASRGGLKVTE 118

Query:   114 AQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAEYSI 173
             AQ ALQA+AADTDGFLEVSDEGDVLYVFP +YR KLAAKS R+++EP ++KAK A +Y  
Sbjct:   119 AQTALQAIAADTDGFLEVSDEGDVLYVFPRDYRTKLAAKSLRIQIEPFLEKAKGAVDYLA 178

Query:   174 RVLFGTALIASIVIVFTAIIAILXXXXXXXXXXXXXXXXXXXX-NIFISPSDLFWYWDPX 232
             RV FGTALIASIVIV+T+IIA+L                     N +I+P DL WYWDP 
Sbjct:   179 RVSFGTALIASIVIVYTSIIALLSSKSEDDNRQRRRGRSYDSGFNFYINPVDLLWYWDPN 238

Query:   233 XXXXXXVQTDDDDKKMNFIKSVFSFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
                    + +D+ K MNFI+SVFSFVFG+GDPNQGIEE+RW++IG+YI S GGVV A+EL
Sbjct:   239 YYNRRRAR-EDEGKGMNFIESVFSFVFGDGDPNQGIEEERWQMIGQYITSRGGVVAADEL 297

Query:   293 APYLDIDRT---MSDESYVLPVLLRFDGQPEIDEEGNILYRFPSFQRTAA-SQRIGRKEY 348
             APYLD+  +   M+DESY+LPVLLRFDGQPE+DEEGNILY FPS QRTA+ S R  RKEY
Sbjct:   298 APYLDVPSSKSAMNDESYILPVLLRFDGQPELDEEGNILYCFPSLQRTASGSSR--RKEY 355

Query:   349 VGRRWADAIGGVEKIFREKKWEFSKTNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPN 408
             VG+ W D +  +EK F+EKKW+FSKT+ SER + IGLG +NLFGVI+L  +L EM+V P 
Sbjct:   356 VGK-WFDWVADMEKFFKEKKWQFSKTSTSERALVIGLGAVNLFGVIVLNTLLNEMSVRPG 414

Query:   409 GFLKFVAYIFPLLQIYAGSFFAIPAVRWFLNLQRNADIEKRNRTREKYARALKSPDISLR 468
             GFL FV  I+PLLQIYAGSFF IP +RWF   ++N  IE RN+ R ++ARAL+SPDI+LR
Sbjct:   415 GFLTFVKNIYPLLQIYAGSFFTIPLIRWFSIKRKNNQIENRNKARLQFARALESPDIALR 474

Query:   469 RKLLSARDMAQKTFIGQDRIVYSTDRDLIEQDYEAREWEKRFREIE 514
             RKLLSARDMAQKT IG+DRIVYSTDRD++EQ+YE  EW++RF+E+E
Sbjct:   475 RKLLSARDMAQKTVIGKDRIVYSTDRDMMEQNYETDEWDRRFKELE 520


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      514       487   0.00081  119 3  11 22  0.37    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  260 KB (2137 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.09u 0.07s 37.16t   Elapsed:  00:00:04
  Total cpu time:  37.10u 0.07s 37.17t   Elapsed:  00:00:04
  Start:  Tue May 21 08:36:25 2013   End:  Tue May 21 08:36:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW20	Y5390_ARATH	No assigned EC number	0.6311	0.9883	0.9713	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	91.52
PRK13239	206	alkylmercury lyase; Provisional	91.46
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	90.38
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	90.12
COG3355	126	Predicted transcriptional regulator [Transcription	89.63
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	88.54
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	87.28
PRK06266	178	transcription initiation factor E subunit alpha; V	86.59
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	84.73
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.32
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	84.31
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	83.44
PF04583	249	Baculo_p74: Baculoviridae p74 conserved region; In	82.89
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	81.34
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	80.57
TIGR02844	80	spore_III_D sporulation transcriptional regulator	80.27
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	80.12

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=91.52  E-value=0.33  Score=39.54  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=43.0

Q ss_pred             CchhhHHHHHHHHhcCC-ceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010245           80 PADVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV  131 (514)
Q Consensus        80 ~~~~~~~im~ave~~g~-rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV  131 (514)
                      +....++|++.+.+.|. .+|+.|+|.+.|++...+.+.|..|..+  |-++-
T Consensus         4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~--G~V~~   54 (68)
T smart00550        4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKK--GKVCK   54 (68)
T ss_pred             chHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence            34567899999999988 6999999999999999999999999876  44443

Helix-turn-helix-containing domain. Also known as Zab.

>PRK13239 alkylmercury lyase; Provisional

Probab=91.46  E-value=0.31  Score=48.30  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=47.6

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010245           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN  143 (514)
Q Consensus        81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~  143 (514)
                      ..+.-.|++.+. .|.-||+.|+|+.+|.+.+++++.|.+|.     ..+.+++|+|+- ||-
T Consensus        21 ~~~~~~llr~la-~G~pvt~~~lA~~~~~~~~~v~~~L~~l~-----~~~~d~~g~iv~-~pl   76 (206)
T PRK13239         21 ATLLVPLLRLLA-KGRPVSVTTLAAALGWPVEEVEAVLEAMP-----DTEYDEDGRIIG-YGL   76 (206)
T ss_pred             hHHHHHHHHHHH-cCCCCCHHHHHHHhCCCHHHHHHHHHhCC-----CeEECCCCCEEe-ccc
Confidence            356677899988 99999999999999999999999999985     347899999975 543

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=90.38  E-value=0.3  Score=37.35  Aligned_cols=39  Identities=23%  Similarity=0.434  Sum_probs=34.9

Q ss_pred             HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010245           86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (514)
Q Consensus        86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd  124 (514)
                      +|++++.+.+...|+.|+|.++|++...+.+-|..|...
T Consensus         7 ~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~   45 (52)
T PF09339_consen    7 RILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEE   45 (52)
T ss_dssp             HHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence            578999999999999999999999999999999998753

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=90.12  E-value=0.6  Score=43.38  Aligned_cols=56  Identities=30%  Similarity=0.495  Sum_probs=46.5

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEcCc
Q 010245           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVFPN  143 (514)
Q Consensus        81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~-GeIlY~FP~  143 (514)
                      +.+..+|++.|.+. +|+|++|+++.+|++.+.++.-|..|.+  .|+|..+.. |    +||.
T Consensus        11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGasR~Tvk~~lreLVa--~G~l~~~G~~G----vF~s   67 (127)
T PF06163_consen   11 EELKARIVELVREH-GRITIKQLVAKTGASRNTVKRYLRELVA--RGDLYRHGRSG----VFPS   67 (127)
T ss_pred             HHHHHHHHHHHHHc-CCccHHHHHHHHCCCHHHHHHHHHHHHH--cCCeEeCCCcc----cccc
Confidence            45667888888775 5899999999999999999999999985  688888776 6    5665

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=89.63  E-value=2.4  Score=39.29  Aligned_cols=84  Identities=21%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE---ec-cCCcEEEEc-CcchHHHHhhhhHHHhHH
Q 010245           85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE---VS-DEGDVLYVF-PNNYRAKLAAKSFRLKVE  159 (514)
Q Consensus        85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq---Vs-e~GeIlY~F-P~~fRs~l~~Ks~r~rl~  159 (514)
                      -.++.++-+.++..|+-|+|..-+++...|+++|+.|...  |-++   ++ +.|-..|.| |.++-..  .+-....++
T Consensus        30 v~v~~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~--GlV~Rek~~~~~Ggy~yiY~~i~~ee~--k~~i~~~l~  105 (126)
T COG3355          30 VEVYKALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEA--GLVEREKVNLKGGGYYYLYKPIDPEEI--KKKILKDLD  105 (126)
T ss_pred             HHHHHHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHc--CCeeeeeeccCCCceeEEEecCCHHHH--HHHHHHHHH
Confidence            3566777778899999999999999999999999999875  3333   33 789999999 8887763  556777788


Q ss_pred             HHHHHHhhhhHHH
Q 010245          160 PVIDKAKAAAEYS  172 (514)
Q Consensus       160 ~~~~k~w~v~~yl  172 (514)
                      .|.++++..+...
T Consensus       106 ~w~~~~~~~i~~~  118 (126)
T COG3355         106 EWYDKMKQLIEEF  118 (126)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887775543

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=88.54  E-value=2.8  Score=34.34  Aligned_cols=77  Identities=21%  Similarity=0.379  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc-CcchH---HHHhhhhHHHhHHH
Q 010245           85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF-PNNYR---AKLAAKSFRLKVEP  160 (514)
Q Consensus        85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~F-P~~fR---s~l~~Ks~r~rl~~  160 (514)
                      -.|++.+.+.+..+|+.|+|...|++...+.+-|..|.+  .|.|+-...+. .|.. |+.++   ..+.+.++.....+
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~--~g~l~~~~~~~-~y~l~~~~~~~~~~~~~~~~l~~~~~~   84 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQE--LGYVEQDGQNG-RYRLGPKVLELGQSYLSSLDLREVAKP   84 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHH--CCCeeecCCCC-ceeecHHHHHHHHHHHhcCCHHHHHHH
Confidence            457888877766899999999999999999999999976  48887764333 3554 33222   22223345555555


Q ss_pred             HHHH
Q 010245          161 VIDK  164 (514)
Q Consensus       161 ~~~k  164 (514)
                      .++.
T Consensus        85 ~l~~   88 (91)
T smart00346       85 VLEE   88 (91)
T ss_pred             HHHH
Confidence            5544

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=87.28  E-value=0.71  Score=39.57  Aligned_cols=49  Identities=22%  Similarity=0.348  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 010245           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL  138 (514)
Q Consensus        84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIl  138 (514)
                      --.+++.+.+ |.-||+.++|+.+|.+.+++.+.|.+..     ..|-+++|.||
T Consensus        26 ~r~LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~~p-----~tEyD~~GrIV   74 (77)
T PF12324_consen   26 LRPLLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAAMP-----DTEYDDQGRIV   74 (77)
T ss_dssp             HHHHHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH-T-----TSEEETTSEEE
T ss_pred             HHHHHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHhCC-----CceEcCCCCee
Confidence            3445666665 9999999999999999999988887775     37888888886

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=86.59  E-value=3.8  Score=39.53  Aligned_cols=85  Identities=19%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhc--CC-ceEeccCCcEEEEcCcchHHHHhhhhHHHh
Q 010245           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT--DG-FLEVSDEGDVLYVFPNNYRAKLAAKSFRLK  157 (514)
Q Consensus        81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~--~G-~LqVse~GeIlY~FP~~fRs~l~~Ks~r~r  157 (514)
                      .+..-.|++++...| .+|..|+|...|++.+++++-|..|..+-  .. .....++|-+.|.+=-++..+  ....+.+
T Consensus        21 ~~~~~~Vl~~L~~~g-~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~w~l~~~~i--~d~ik~~   97 (178)
T PRK06266         21 DEEGFEVLKALIKKG-EVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYTWKPELEKL--PEIIKKK   97 (178)
T ss_pred             CccHhHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEEEEeCHHHH--HHHHHHH
Confidence            445678999999888 69999999999999999999999999885  11 223336888999775555553  2334444


Q ss_pred             HHHHHHHHhhh
Q 010245          158 VEPVIDKAKAA  168 (514)
Q Consensus       158 l~~~~~k~w~v  168 (514)
                      +....++++.-
T Consensus        98 ~~~~~~klk~~  108 (178)
T PRK06266         98 KMEELKKLKEQ  108 (178)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=84.73  E-value=1.2  Score=36.53  Aligned_cols=54  Identities=22%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEE
Q 010245           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLY  139 (514)
Q Consensus        84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse--~GeIlY  139 (514)
                      .+.|++.+++....+|-.|||...|++..+|+.=|..|..+  |.++-++  .|-..|
T Consensus         2 ke~Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~e--G~V~~~~~~rG~~~~   57 (62)
T PF04703_consen    2 KEKILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKE--GKVERSPVRRGKSTY   57 (62)
T ss_dssp             HHCHHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHC--TSEEEES-SSSSS-E
T ss_pred             cHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEecCCCCccee
Confidence            36799999998889999999999999999999999988765  5666544  354433

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.32  E-value=6.4  Score=37.19  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCC---ceEeccCCcEEEEcCcchHHHHhhhhHHHhHHHHH
Q 010245           86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDG---FLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVI  162 (514)
Q Consensus        86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G---~LqVse~GeIlY~FP~~fRs~l~~Ks~r~rl~~~~  162 (514)
                      .||+|+-..| -+|..|+|...|++++++++.|..|..+-=.   +.+-.++|-+.|.+=-++..+  -...+.++....
T Consensus        18 ~Vl~aL~~~~-~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i--~d~Ik~~~~~~~   94 (158)
T TIGR00373        18 LVLFSLGIKG-EFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKA--LDVLKRKLEETA   94 (158)
T ss_pred             HHHHHHhccC-CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHH--HHHHHHHHHHHH
Confidence            4678887777 6999999999999999999999999988632   556677899999975567664  334555555555


Q ss_pred             HHHhhh
Q 010245          163 DKAKAA  168 (514)
Q Consensus       163 ~k~w~v  168 (514)
                      ++++.-
T Consensus        95 ~~lk~~  100 (158)
T TIGR00373        95 KKLREK  100 (158)
T ss_pred             HHHHHH
Confidence            555444

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=84.31  E-value=2  Score=31.97  Aligned_cols=41  Identities=17%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010245           83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (514)
Q Consensus        83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd  124 (514)
                      .+.+|++.+.+.+ ++|+.|+|...|++...+.+.|..|..+
T Consensus         4 ~~~~Il~~l~~~~-~~t~~ela~~~~is~~tv~~~l~~L~~~   44 (48)
T PF13412_consen    4 TQRKILNYLRENP-RITQKELAEKLGISRSTVNRYLKKLEEK   44 (48)
T ss_dssp             HHHHHHHHHHHCT-TS-HHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence            4578999999955 5999999999999999999999998764

...

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=83.44  E-value=2.3  Score=33.40  Aligned_cols=53  Identities=26%  Similarity=0.439  Sum_probs=44.2

Q ss_pred             CchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 010245           80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG  135 (514)
Q Consensus        80 ~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G  135 (514)
                      ....|-+|++.+ ..+...|++++|...|++.+.+-.-|..|..  .|-+++..+|
T Consensus         8 ~~p~R~~Il~~L-~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~--aGli~~~~~g   60 (61)
T PF12840_consen    8 SDPTRLRILRLL-ASNGPMTVSELAEELGISQSTVSYHLKKLEE--AGLIEVEREG   60 (61)
T ss_dssp             TSHHHHHHHHHH-HHCSTBEHHHHHHHHTS-HHHHHHHHHHHHH--TTSEEEEEET
T ss_pred             CCHHHHHHHHHH-hcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCeEEeccC
Confidence            345678888888 6788899999999999999999999999977  6778777766

...

>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV)

Probab=82.89  E-value=5.2  Score=41.02  Aligned_cols=87  Identities=20%  Similarity=0.421  Sum_probs=54.5

Q ss_pred             cchHHHHhhhhHHHhHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCce
Q 010245          143 NNYRAKLAAKSFRLKVEP-----VIDKAKAAAEYSIRVLFGTALIASIVIVFTAIIAILSSKSDDDDRGRRRRSFDSGFN  217 (514)
Q Consensus       143 ~~fRs~l~~Ks~r~rl~~-----~~~k~w~v~~yliRVsFG~~LIaSivlv~~aIiailss~s~~d~r~r~g~g~~~g~~  217 (514)
                      +.+-.++.+..+|..+..     ..+-+-.++..+.|+...-+-|+-|++++++|+-++                     
T Consensus        62 ~~vt~rlLgetyKaav~h~~nr~aIkt~s~vAkal~r~~~~AaSVvgi~Li~~ti~Dlv---------------------  120 (249)
T PF04583_consen   62 RRVTVRLLGETYKAAVVHQLNRIAIKTVSTVAKALTRIAIAAASVVGIVLIFLTIADLV---------------------  120 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            445566666666554322     333447788888888888888888888888887662                     


Q ss_pred             EeecCcccceeeCCccccccccccCCCccCCchhhhhhhcc
Q 010245          218 IFISPSDLFWYWDPYYYRRRRVQTDDDDKKMNFIKSVFSFV  258 (514)
Q Consensus       218 ~~~~p~DlFWy~dp~yyrrr~~~~~~~~~~mnFlEsVFSFv  258 (514)
                              +=+||||+|...=.+.=.++=-.+|+.|-|.=+
T Consensus       121 --------L~~WDPfGYnNMFPr~~ldDLs~sfl~A~~esl  153 (249)
T PF04583_consen  121 --------LMFWDPFGYNNMFPREYLDDLSRSFLSAYYESL  153 (249)
T ss_pred             --------HHhcCcccccccCCCcchHHHHHHHHHHHHHHh
Confidence                    236799998543221100111257777777655

BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=81.34  E-value=3  Score=32.78  Aligned_cols=40  Identities=13%  Similarity=0.298  Sum_probs=36.0

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010245           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (514)
Q Consensus        84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd  124 (514)
                      +..|++.+++. +.+|+.|+|..-|+|...+++.|..|+..
T Consensus         2 ~~~Il~~l~~~-~~~s~~ela~~~~VS~~TiRRDl~~L~~~   41 (57)
T PF08220_consen    2 QQQILELLKEK-GKVSVKELAEEFGVSEMTIRRDLNKLEKQ   41 (57)
T ss_pred             HHHHHHHHHHc-CCEEHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence            46789999886 58999999999999999999999999875

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=80.57  E-value=9  Score=28.85  Aligned_cols=60  Identities=25%  Similarity=0.424  Sum_probs=46.5

Q ss_pred             CCchhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC-cEEEEcC
Q 010245           79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFP  142 (514)
Q Consensus        79 l~~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G-eIlY~FP  142 (514)
                      +....+..|++++.+.+  ++..|+|...|++...+.+.|..|.+.  |.+....++ ...|.+.
T Consensus         4 ~~~~~~~~il~~l~~~~--~~~~ei~~~~~i~~~~i~~~l~~L~~~--g~i~~~~~~~~~~~~~~   64 (78)
T cd00090           4 LSDPTRLRILRLLLEGP--LTVSELAERLGLSQSTVSRHLKKLEEA--GLVESRREGRRVYYSLT   64 (78)
T ss_pred             ccChHHHHHHHHHHHCC--cCHHHHHHHHCcCHhHHHHHHHHHHHC--CCeEEEEeccEEEEEeC
Confidence            34456778899888866  999999999999999999999999764  677765544 4555554

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID

Probab=80.27  E-value=1.9  Score=36.90  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHH
Q 010245           83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKAL  118 (514)
Q Consensus        83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L  118 (514)
                      -+..|++.+.+  +.+|+.|||..+|+|...+.+.|
T Consensus         7 R~~~I~e~l~~--~~~ti~dvA~~~gvS~~TVsr~L   40 (80)
T TIGR02844         7 RVLEIGKYIVE--TKATVRETAKVFGVSKSTVHKDV   40 (80)
T ss_pred             HHHHHHHHHHH--CCCCHHHHHHHhCCCHHHHHHHh
Confidence            45788999999  99999999999999999998866

Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=80.12  E-value=4.2  Score=29.96  Aligned_cols=50  Identities=20%  Similarity=0.376  Sum_probs=39.7

Q ss_pred             HHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 010245           87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV  140 (514)
Q Consensus        87 im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~  140 (514)
                      |+..+.  ...+|+.|++...|++...+.+.|..|.++  |-+.....|...|.
T Consensus         2 il~~l~--~~~~~~~~i~~~l~is~~~v~~~l~~L~~~--g~i~~~~~~~~~~~   51 (66)
T smart00418        2 ILKLLA--EGELCVCELAEILGLSQSTVSHHLKKLREA--GLVESRREGKRVYY   51 (66)
T ss_pred             HHHHhh--cCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CCeeeeecCCEEEE
Confidence            567776  667899999999999999999999999975  77776665554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 66/502 (13%), Positives = 140/502 (27%), Gaps = 147/502 (29%)

Query: 135 GDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAK-------AAAEYSIRVLFGTALI--ASI 185
            D+L VF + +      K  +   + ++ K +         A      LF T L     +
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 186 VIVFTAIIA------ILSS-KSDDDDRGRRRRSFDSGFNIFISPSDLFWYWDPYYYRRRR 238
           V  F   +       ++S  K++        R +    +   + + +F     Y   R  
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRL- 134

Query: 239 VQTDDDDKKMNFIKSVF------SFVFGEGDPNQGIEEKRWKLIGEYIASNGGVVTAEEL 292
                  +    ++           V  +G    G   K W +  + +  +  V    + 
Sbjct: 135 -------QPYLKLRQALLELRPAKNVLIDGVLGSG---KTW-VALD-VCLSYKVQCKMDF 182

Query: 293 APY-LDIDRTMSDESYVLPVLLRF------DGQPEIDEEGNILYRFPSFQRTAASQRIGR 345
             + L++    S E+ VL +L +       +     D   NI  R  S Q     + +  
Sbjct: 183 KIFWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS 240

Query: 346 KEY---------VGRRW--------------------ADAIGG----------VEKIFRE 366
           K Y         V                         D +                   
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 367 KKWE--FSK-TNMSERGMAIGLGGLNLFGVIILGAMLQEMAVTPNGFLK----------- 412
            + +    K  +   + +   +   N   + I+   +++   T + +             
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 413 -FVAYIFP--LLQIYAG-SFF----AIPA----VRW----------FLN-LQRNADIEKR 449
             +  + P    +++   S F     IP     + W           +N L + + +EK+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 450 NRTREKYARALKSPDISLRRKLLSARDMAQ--KTFIGQDRIVYSTDRD----LIEQDY-- 501
               ++   ++  P I L  K +   +     ++ +    I  + D D         Y  
Sbjct: 421 P---KESTISI--PSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 502 --------EAREWEK--RFREI 513
                        E+   FR +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV 496

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	92.76
3f2g_A	220	Alkylmercury lyase; MERB, organomercurial lyase, m	92.65
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	92.24
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	91.76
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	90.12
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	87.9
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	87.44
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	82.16
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	82.03
3r0a_A	123	Putative transcriptional regulator; structural gen	81.13
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	81.03

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=92.76  E-value=0.15  Score=41.75  Aligned_cols=49  Identities=24%  Similarity=0.339  Sum_probs=42.2

Q ss_pred             hhhHHHHHHHHhc-----CCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010245           82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS  132 (514)
Q Consensus        82 ~~~~~im~ave~~-----g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs  132 (514)
                      +....|++.+++.     ||.+|+.|+|...|+|...+++.|.+|...  |.|+-+
T Consensus         4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k--G~I~R~   57 (77)
T 2jt1_A            4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV--GVLEKV   57 (77)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred             HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEec
Confidence            4567899999998     999999999999999999999999999875  455544

>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A

Probab=92.65  E-value=0.092  Score=51.02  Aligned_cols=56  Identities=16%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 010245           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN  143 (514)
Q Consensus        81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~  143 (514)
                      ..+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|..|.     .++.+++|+|+. ||-
T Consensus        21 ~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp~   76 (220)
T 3f2g_A           21 ADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YGL   76 (220)
T ss_dssp             HHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SSE
T ss_pred             hHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ecC
Confidence            345567788887 99999999999999999999999999885     699999999977 765

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=92.24  E-value=0.17  Score=40.56  Aligned_cols=44  Identities=27%  Similarity=0.447  Sum_probs=38.8

Q ss_pred             HHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 010245           85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE  130 (514)
Q Consensus        85 ~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~Lq  130 (514)
                      +.++.-+....++.|+|+||+.-|.++++|+.+|..|-+|  |.|.
T Consensus         6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~--G~LR   49 (68)
T 3i71_A            6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA--GTLR   49 (68)
T ss_dssp             HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEE
T ss_pred             HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc--chhh
Confidence            5677788899999999999999999999999999999886  4454

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=91.76  E-value=0.22  Score=38.92  Aligned_cols=51  Identities=10%  Similarity=0.125  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 010245           83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG  135 (514)
Q Consensus        83 ~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~G  135 (514)
                      .+++|++.+++.+..+|+.|+|...|++...+.+.|..|-++  |.++.+..|
T Consensus        11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~--G~I~~~~~G   61 (67)
T 2heo_A           11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE--DRVSSPSPK   61 (67)
T ss_dssp             HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEEEETT
T ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEecCCCc
Confidence            578999999998888999999999999999999999998765  446655555

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=90.12  E-value=0.35  Score=40.48  Aligned_cols=43  Identities=9%  Similarity=0.229  Sum_probs=40.3

Q ss_pred             hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhh
Q 010245           82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD  124 (514)
Q Consensus        82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd  124 (514)
                      +..++|+++++..|.-+..||||..+|++..++.++|.+|-.+
T Consensus        19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkE   61 (80)
T 2lnb_A           19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKE   61 (80)
T ss_dssp             HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4578999999999999999999999999999999999999765

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=87.90  E-value=1.1  Score=36.83  Aligned_cols=82  Identities=21%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             hhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-----cCCcEEEEcCcchHHHHhhhhHHH
Q 010245           82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYVFPNNYRAKLAAKSFRL  156 (514)
Q Consensus        82 ~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs-----e~GeIlY~FP~~fRs~l~~Ks~r~  156 (514)
                      +.+-+|+..+-+.|.++|+.|+|...|++...+.++|..|.++  |-++..     ..|-.+|.+.-+-...  ..-+..
T Consensus        18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~--GlV~~~~~~~~~~g~~v~~~~~~~~~i--~~~~~~   93 (110)
T 1q1h_A           18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ--GFVSYRKTRDKDSGWFIYYWKPNIDQI--NEILLN   93 (110)
T ss_dssp             STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH--TSCEEEEEC---CCCCEEEEECTHHHH--C-----
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecccCCCceEEEEeecCHHHH--HHHHHH
Confidence            4667899988778878999999999999999999999999876  566655     5677777332222221  223444


Q ss_pred             hHHHHHHHHhh
Q 010245          157 KVEPVIDKAKA  167 (514)
Q Consensus       157 rl~~~~~k~w~  167 (514)
                      +++.+.+++..
T Consensus        94 ~~~~~~e~l~~  104 (110)
T 1q1h_A           94 RKRLILDKLKT  104 (110)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHH
Confidence            45555555443

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=87.44  E-value=0.93  Score=37.34  Aligned_cols=59  Identities=12%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             chhhHHHHHHHHhcCCceeehhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 010245           81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVFP  142 (514)
Q Consensus        81 ~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~-~ae~~L~aLAsd~~G~LqVse~GeIlY~FP  142 (514)
                      ++.+++|++.+++.| .+|+.|+|..-|++.. .+++.|..|..+  |-++-...|-.+|.-.
T Consensus        10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~LT   69 (79)
T 1xmk_A           10 AEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHLT   69 (79)
T ss_dssp             HHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEEC
T ss_pred             hhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEeC
Confidence            357899999999998 5899999999999999 999999999875  5666556676666544

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=82.16  E-value=1.5  Score=34.55  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=39.0

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 010245           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV  131 (514)
Q Consensus        84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqV  131 (514)
                      +.+|++.+.+.| .+|+.|+|...|++...+.+.|..|.++  |-++.
T Consensus         2 r~~Il~~L~~~~-~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~   46 (81)
T 2htj_A            2 KNEILEFLNRHN-GGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR   46 (81)
T ss_dssp             HHHHHHHHHHSC-CCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence            578999998764 6999999999999999999999999875  66764

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=82.03  E-value=2.8  Score=40.23  Aligned_cols=69  Identities=20%  Similarity=0.251  Sum_probs=54.1

Q ss_pred             cccCCCC-chhhHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 010245           74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY  145 (514)
Q Consensus        74 ~~~~~l~-~~~~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~GeIlY~FP~~f  145 (514)
                      |++..-. .....+|++.++.. +.||+.++|..-|.+..-|+..|..+-.  .|.|=++++++-+|-||.-|
T Consensus       145 vqs~~~~~~~~~~~il~~~~~~-g~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f  214 (218)
T 3cuq_B          145 IELQSHKEEEMVASALETVSEK-GSLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF  214 (218)
T ss_dssp             EEETTCCGGGGHHHHHHHHHHT-SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred             EEcCCCchHHHHHHHHHHHHHC-CCcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence            5554333 25678888888865 4699999999999999999999988554  68888888777788799655

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=81.13  E-value=8.1  Score=32.87  Aligned_cols=84  Identities=14%  Similarity=0.211  Sum_probs=59.0

Q ss_pred             hhhHHHHHHHHhcCCc-eeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec----cCCcEEEEcC-cchHHHHhhhhHH
Q 010245           82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVFP-NNYRAKLAAKSFR  155 (514)
Q Consensus        82 ~~~~~im~ave~~g~r-vTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs----e~GeIlY~FP-~~fRs~l~~Ks~r  155 (514)
                      ..+-+|+.++.+.+.. +|+.|+|...|++...+.+.|..|...  |-++-.    +.|-..|+|. ......  ..-.+
T Consensus        26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~--GlV~r~~~~~d~~~~~~~y~~~~~~~~--~~~i~  101 (123)
T 3r0a_A           26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK--EILQRSQQNLDGGGYVYIYKIYSKNQI--RNIIQ  101 (123)
T ss_dssp             HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEEEEECTTSCEEEEEEECCHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEeeCCccCCCcceEEEecCCHHHH--HHHHH
Confidence            3467899999988877 999999999999999999999999854  566532    2344666662 222221  23455


Q ss_pred             HhHHHHHHHHhhhh
Q 010245          156 LKVEPVIDKAKAAA  169 (514)
Q Consensus       156 ~rl~~~~~k~w~v~  169 (514)
                      ..++.|.+.+...+
T Consensus       102 ~~~~~~~~~~~~~l  115 (123)
T 3r0a_A          102 KIVQSWADRLGQEL  115 (123)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH
Confidence            66777777665543

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=81.03  E-value=1.8  Score=35.42  Aligned_cols=50  Identities=26%  Similarity=0.389  Sum_probs=42.1

Q ss_pred             chhhHHHHHHHHhcC--CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 010245           81 ADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS  132 (514)
Q Consensus        81 ~~~~~~im~ave~~g--~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVs  132 (514)
                      .+...+|++.+.+.+  .++|+.|+|.+.|++...+++.|..|..+  |.++..
T Consensus         9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~--G~I~~~   60 (81)
T 1qbj_A            9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK--GKLQKE   60 (81)
T ss_dssp             HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred             hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEec
Confidence            456788999999887  58999999999999999999999999764  556543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d1u5ta2	68	Vacuolar sorting protein SNF8 {Baker's yeast (Sacc	83.95
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	80.62
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	80.29

>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.95  E-value=0.51  Score=36.44  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             hHHHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEcCcch
Q 010245           84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNY  145 (514)
Q Consensus        84 ~~~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse--~GeIlY~FP~~f  145 (514)
                      +..|+++.+.. +.||+..+-...|-+..-|+.+|..|..+  |-+=|++  .||..|=||.-|
T Consensus         5 qt~vLe~a~~~-G~Vt~s~l~~~lgW~~~Ra~~aLd~lv~e--Gl~WvD~Q~~~e~~YWfPsl~   65 (68)
T d1u5ta2           5 QTKILEICSIL-GYSSISLLKANLGWEAVRSKSALDEMVAN--GLLWIDYQGGAEALYWDPSWI   65 (68)
T ss_dssp             HHHHHHTTTTT-SCCBHHHHHHHHCCCSHHHHHHHHHHHHT--TSSEEECSSSSSCEEECGGGG
T ss_pred             HHHHHHHHHHc-CceeHHHHHHHhCCCHHHHHHHHHHHHhc--CcEEEecCCCCCceeeChHhh
Confidence            45788888888 57899999999999999999999999885  5555554  479999999865

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=80.62  E-value=1.3  Score=32.90  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=43.7

Q ss_pred             hhhHHHHHHHHhcC-CceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 010245           82 DVRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE  134 (514)
Q Consensus        82 ~~~~~im~ave~~g-~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~  134 (514)
                      .++.+|.++.++.| .--|+.|||...|++..++ +.++.++.+.|=-.+|+++
T Consensus         7 ~l~~~I~~~~~~~g~~PP~vrdl~~~l~~~e~~~-~~lL~~l~~~G~lvkI~~d   59 (64)
T d1lvaa3           7 KLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSEL-EELLHYLVREGVLVKINDE   59 (64)
T ss_dssp             HHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHH-HHHHHHHHHTTSEEESSSS
T ss_pred             HHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHH-HHHHHHHHHCCCEEEeccc
Confidence            56789999999988 5679999999999999999 6777777777877778654

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.29  E-value=1.9  Score=32.41  Aligned_cols=49  Identities=18%  Similarity=0.303  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCCceeehhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc
Q 010245           86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD  136 (514)
Q Consensus        86 ~im~ave~~g~rvTvgDVAa~aGL~l~~ae~~L~aLAsd~~G~LqVse~Ge  136 (514)
                      +|++.+...+..+|+.|+|.++|++...+-+=|..|..  -|.|+=+++|.
T Consensus         9 ~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~--~g~l~~~~~g~   57 (75)
T d1mkma1           9 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDKR   57 (75)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTSC
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCCC
Confidence            57888889999999999999999999999888888875  47888777775