Your job contains 1 sequence.
>010247
MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN
RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKK
DSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAED
NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD
AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII
KPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE
DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH
LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAA
AWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010247
(514 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180172 - symbol:EMB2730 "EMBRYO DEFECTIVE 273... 1130 2.7e-178 3
TIGR_CMR|BA_5334 - symbol:BA_5334 "ribonuclease R" specie... 202 1.5e-16 2
ZFIN|ZDB-GENE-080213-3 - symbol:dis3 "DIS3 mitotic contro... 200 3.4e-15 2
MGI|MGI:1919912 - symbol:Dis3 "DIS3 mitotic control homol... 200 3.5e-15 2
UNIPROTKB|E2RNY6 - symbol:DIS3 "Uncharacterized protein" ... 199 4.6e-15 2
TIGR_CMR|CHY_0289 - symbol:CHY_0289 "ribonuclease R" spec... 194 9.3e-15 2
UNIPROTKB|F1RHF7 - symbol:DIS3 "Uncharacterized protein" ... 193 1.1e-14 2
UNIPROTKB|E1BXX6 - symbol:DIS3 "Uncharacterized protein" ... 193 2.1e-14 2
ASPGD|ASPL0000038338 - symbol:AN9151 species:162425 "Emer... 154 5.8e-14 2
UNIPROTKB|Q9KLE1 - symbol:rnb "Exoribonuclease 2" species... 211 7.7e-14 1
TIGR_CMR|VC_A0805 - symbol:VC_A0805 "exoribonuclease II" ... 211 7.7e-14 1
UNIPROTKB|G3V1J5 - symbol:DIS3 "Exosome complex exonuclea... 186 9.4e-14 2
UNIPROTKB|Q9Y2L1 - symbol:DIS3 "Exosome complex exonuclea... 186 1.6e-13 2
ASPGD|ASPL0000011287 - symbol:AN3657 species:162425 "Emer... 173 1.7e-13 2
TIGR_CMR|GSU_1485 - symbol:GSU_1485 "ribonuclease R, puta... 180 2.4e-13 2
POMBASE|SPBC26H8.10 - symbol:dis3 "3'-5' exoribonuclease ... 165 3.5e-13 2
UNIPROTKB|G4MRS6 - symbol:MGG_13800 "Mitochondrial protei... 151 5.4e-13 3
DICTYBASE|DDB_G0278757 - symbol:DDB_G0278757 "DIS3-like e... 173 7.1e-13 2
CGD|CAL0003527 - symbol:orf19.5229 species:5476 "Candida ... 171 1.5e-12 2
ASPGD|ASPL0000054659 - symbol:AN1158 species:162425 "Emer... 158 2.9e-12 2
SGD|S000005381 - symbol:DIS3 "Exosome core complex cataly... 167 4.0e-12 2
UNIPROTKB|H7C440 - symbol:DIS3L2 "DIS3-like exonuclease 2... 152 5.7e-12 2
TIGR_CMR|CBU_1091 - symbol:CBU_1091 "ribonuclease R" spec... 167 9.9e-12 2
TIGR_CMR|SPO_3330 - symbol:SPO_3330 "ribonuclease R" spec... 132 1.0e-11 2
UNIPROTKB|G4NDV8 - symbol:MGG_00193 "Mitotic control prot... 163 1.1e-11 2
ZFIN|ZDB-GENE-070705-171 - symbol:si:ch211-273k1.4 "si:ch... 141 2.3e-11 2
DICTYBASE|DDB_G0288469 - symbol:DDB_G0288469 species:4468... 190 2.7e-11 1
MGI|MGI:2442555 - symbol:Dis3l2 "DIS3 mitotic control hom... 156 4.5e-11 2
UNIPROTKB|Q8IYB7 - symbol:DIS3L2 "DIS3-like exonuclease 2... 152 8.0e-11 2
RGD|1560168 - symbol:Dis3l2 "DIS3 mitotic control homolog... 152 1.3e-10 2
TIGR_CMR|CPS_4617 - symbol:CPS_4617 "ribonuclease R" spec... 134 1.4e-10 2
UNIPROTKB|F1N1R4 - symbol:DIS3 "Uncharacterized protein" ... 158 1.4e-10 2
POMBASE|SPCC1322.01 - symbol:rpm1 "3'-5' exonuclease for ... 120 3.7e-10 2
UNIPROTKB|E2QZ40 - symbol:DIS3L2 "Uncharacterized protein... 145 4.4e-10 2
UNIPROTKB|F6XKS7 - symbol:DIS3L2 "Uncharacterized protein... 145 4.5e-10 2
UNIPROTKB|E1B7R0 - symbol:DIS3L2 "Uncharacterized protein... 145 4.6e-10 2
UNIPROTKB|F1PK78 - symbol:DIS3L "Uncharacterized protein"... 152 1.6e-09 2
UNIPROTKB|E1C372 - symbol:DIS3L2 "Uncharacterized protein... 137 1.6e-09 2
UNIPROTKB|P21499 - symbol:rnr species:83333 "Escherichia ... 130 2.4e-09 3
POMBASE|SPAC2C4.07c - symbol:SPAC2C4.07c "ribonuclease II... 154 2.5e-09 3
FB|FBgn0039183 - symbol:Dis3 "Dis3" species:7227 "Drosoph... 144 2.9e-09 3
UNIPROTKB|F1NKN5 - symbol:LOC100857630 "Uncharacterized p... 147 3.1e-09 2
MGI|MGI:2143272 - symbol:Dis3l "DIS3 mitotic control homo... 146 4.7e-09 2
CGD|CAL0003016 - symbol:SSD1 species:5476 "Candida albica... 142 4.8e-09 2
UNIPROTKB|Q5AK62 - symbol:SSD1 "Putative uncharacterized ... 142 4.8e-09 2
UNIPROTKB|F1SJJ9 - symbol:DIS3L "Uncharacterized protein"... 144 6.1e-09 2
UNIPROTKB|I3LEH1 - symbol:DIS3L "Uncharacterized protein"... 144 6.1e-09 2
UNIPROTKB|Q9KNY1 - symbol:rnr "Ribonuclease R" species:24... 136 7.4e-09 2
TIGR_CMR|VC_2599 - symbol:VC_2599 "ribonuclease R" specie... 136 7.4e-09 2
RGD|1308959 - symbol:Dis3l "DIS3 mitotic control homolog ... 143 9.9e-09 2
UNIPROTKB|Q0P4R5 - symbol:dis3l "DIS3-like exonuclease 1"... 144 1.1e-08 3
UNIPROTKB|A0JN80 - symbol:DIS3L "DIS3-like exonuclease 1"... 140 1.6e-08 2
UNIPROTKB|F1MEA6 - symbol:DIS3L "DIS3-like exonuclease 1"... 140 1.6e-08 2
UNIPROTKB|Q8TF46 - symbol:DIS3L "DIS3-like exonuclease 1"... 140 2.1e-08 2
UNIPROTKB|Q5R5N8 - symbol:DIS3L "DIS3-like exonuclease 1"... 140 2.1e-08 2
TAIR|locus:2203231 - symbol:AT1G77680 species:3702 "Arabi... 137 2.2e-08 2
ZFIN|ZDB-GENE-070209-95 - symbol:dis3l "DIS3 mitotic cont... 138 3.4e-08 2
UNIPROTKB|P30850 - symbol:rnb "ribonuclease II" species:8... 157 6.1e-08 1
DICTYBASE|DDB_G0268186 - symbol:DDB_G0268186 species:4468... 116 6.4e-08 4
WB|WBGene00001001 - symbol:dis-3 species:6239 "Caenorhabd... 138 1.1e-07 2
CGD|CAL0000344 - symbol:orf19.3624 species:5476 "Candida ... 107 1.2e-07 2
FB|FBgn0035111 - symbol:CG16940 species:7227 "Drosophila ... 123 1.7e-07 2
TIGR_CMR|SO_3935 - symbol:SO_3935 "ribonuclease R" specie... 128 1.7e-07 2
DICTYBASE|DDB_G0293614 - symbol:DDB_G0293614 "putative ex... 136 2.6e-07 2
RGD|1304646 - symbol:Dis3 "DIS3 mitotic control homolog (... 148 4.8e-07 1
DICTYBASE|DDB_G0285435 - symbol:DDB_G0285435 species:4468... 135 6.0e-07 3
WB|WBGene00018612 - symbol:F48E8.6 species:6239 "Caenorha... 110 1.2e-06 2
UNIPROTKB|F2Z2C0 - symbol:DIS3 "Exosome complex exonuclea... 143 1.7e-06 1
POMBASE|SPBC609.01 - symbol:SPBC609.01 "ribonuclease II (... 128 3.4e-06 2
POMBASE|SPCC16C4.09 - symbol:sts5 "RNB-like protein" spec... 130 3.4e-06 2
SGD|S000002701 - symbol:SSD1 "Translational repressor wit... 118 4.5e-06 2
UNIPROTKB|Q6GN11 - symbol:dis3l "DIS3-like exonuclease 1"... 118 4.7e-06 2
GENEDB_PFALCIPARUM|MAL13P1.289 - symbol:MAL13P1.289 "mito... 123 5.6e-06 3
UNIPROTKB|Q8IDB6 - symbol:MAL13P1.289 "Mitotic control pr... 123 5.6e-06 3
UNIPROTKB|Q5HVE0 - symbol:CJE0734 "RNB-like protein" spec... 110 6.7e-06 2
TIGR_CMR|CJE_0734 - symbol:CJE_0734 "RNB-like protein" sp... 110 6.7e-06 2
>TAIR|locus:2180172 [details] [associations]
symbol:EMB2730 "EMBRYO DEFECTIVE 2730" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0004540 "ribonuclease activity" evidence=IEA;ISS] [GO:0009793
"embryo development ending in seed dormancy" evidence=NAS]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA;IMP]
[GO:0009658 "chloroplast organization" evidence=RCA;IMP]
[GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0034660 "ncRNA metabolic
process" evidence=RCA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009658
GO:GO:0003723 GO:GO:0006364 GO:GO:0000175 eggNOG:COG0557
EMBL:AL162874 GO:GO:0008859 EMBL:BT010457 EMBL:AK176383
IPI:IPI00548385 PIR:T48246 RefSeq:NP_195845.2 UniGene:At.4904
ProteinModelPortal:Q6NQJ6 SMR:Q6NQJ6 STRING:Q6NQJ6 PaxDb:Q6NQJ6
PRIDE:Q6NQJ6 EnsemblPlants:AT5G02250.1 GeneID:830864
KEGG:ath:AT5G02250 GeneFarm:4119 TAIR:At5g02250
HOGENOM:HOG000029837 InParanoid:Q6NQJ6 OMA:RVEEAHP PhylomeDB:Q6NQJ6
ProtClustDB:CLSN2681022 Genevestigator:Q6NQJ6 Uniprot:Q6NQJ6
Length = 803
Score = 1130 (402.8 bits), Expect = 2.7e-178, Sum P(3) = 2.7e-178
Identities = 220/302 (72%), Positives = 250/302 (82%)
Query: 175 LQKAED-NLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEP 233
L ++ D + + R DLTHLKVYAIDV SA RLQDGRIK++IHVADP +Y+ P
Sbjct: 388 LSESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTP 447
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY 293
GS D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EY
Sbjct: 448 GSKVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEY 507
Query: 294 SVDNSIIKPTYMLTYESATXXXXXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATLETR 353
SVDNSII+PTYMLTYESA+ K+LSEAA +R QWR +QGA+DT TLETR
Sbjct: 508 SVDNSIIRPTYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETR 567
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
IKV NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNI
Sbjct: 568 IKVVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNI 627
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
DVSAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHY
Sbjct: 628 DVSAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHY 687
Query: 474 QV 475
Q+
Sbjct: 688 QI 689
Score = 478 (173.3 bits), Expect = 2.7e-178, Sum P(3) = 2.7e-178
Identities = 108/194 (55%), Positives = 136/194 (70%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREF-SKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAI--RK--RLRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I RK R+RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
Score = 161 (61.7 bits), Expect = 2.7e-178, Sum P(3) = 2.7e-178
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 458 QFTSPIRRYM-DLLAHY---QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
++T+ + R++ D +A +VG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 744 KYTALVLRFVKDRIASLLLVEVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
>TIGR_CMR|BA_5334 [details] [associations]
symbol:BA_5334 "ribonuclease R" species:198094 "Bacillus
anthracis str. Ames" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0016070 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
HOGENOM:HOG000071119 RefSeq:NP_847510.1 RefSeq:YP_021992.2
RefSeq:YP_031196.1 ProteinModelPortal:Q81XA6 IntAct:Q81XA6
DNASU:1084838 EnsemblBacteria:EBBACT00000009754
EnsemblBacteria:EBBACT00000016672 EnsemblBacteria:EBBACT00000021451
GeneID:1084838 GeneID:2818515 GeneID:2848989 KEGG:ban:BA_5334
KEGG:bar:GBAA_5334 KEGG:bat:BAS4956 ProtClustDB:CLSK873641
BioCyc:BANT260799:GJAJ-5031-MONOMER
BioCyc:BANT261594:GJ7F-5204-MONOMER Uniprot:Q81XA6
Length = 808
Score = 202 (76.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 57/239 (23%), Positives = 116/239 (48%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID + +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVS--VVLHSDGSIAEYSV 295
D +A +R TSV+L PM P +L+ G+ +V + +T+S + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLS-NGICSLNPKV-DRLTLSCEMEINNLGDVVKHEI 362
Query: 296 DNSIIKPTYMLTYESATXXXXXXXXXXXXX--------KILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY K + + A + + R+++GAID
Sbjct: 363 FQSVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAQILREKRMRRGAIDF 422
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 423 DFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Score = 83 (34.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
PE V S+ +++ M+ A D + H L Y FTSPIRRY D + H +
Sbjct: 524 PEEVVISTVMLRSMKQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVHRLI----RE 578
Query: 482 WVSVGAQIGDEVEVKVEEAHP 502
++ + ++ +E + K E P
Sbjct: 579 YI-INGKVDNETQAKWREKLP 598
>ZFIN|ZDB-GENE-080213-3 [details] [associations]
symbol:dis3 "DIS3 mitotic control homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
ZFIN:ZDB-GENE-080213-3 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 SMART:SM00670 CTD:22894 EMBL:BX571717 IPI:IPI00803594
RefSeq:XP_001336850.2 UniGene:Dr.51536 ProteinModelPortal:E7FE01
Ensembl:ENSDART00000085454 GeneID:100003553 KEGG:dre:100003553
NextBio:20785882 Bgee:E7FE01 Uniprot:E7FE01
Length = 950
Score = 200 (75.5 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 65/244 (26%), Positives = 110/244 (45%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E++L R DL HL V ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 458 EEDLKVRADLRHLCVCSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 517
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGT+V+L M PE L+ SLR A + ++ I + S
Sbjct: 518 QEAANRGTTVYLCGKRIDMVPELLSSNLCSLRSNVERLAFSCIWEMNHKAEIIKTHFTKS 577
Query: 299 IIKPTYMLTYESATXXXXXXXXXXXXXKIL---SEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY A K L ++ A + R+ +GA+ ++ E R
Sbjct: 578 VINSKASLTYAEAQMRIDDTTMNDDITKSLRGLNKLAKILKAQRIDKGALTLSSPEVRFH 637
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQPQS 411
+ + E +PI +L ++ + +V E M+L ++A Y F+ AL + P S
Sbjct: 638 I-DSETHDPI-DLQTKELME-TNSMVEEFMLLANISVAQKIYDEFSECALLRKHPAPPPS 694
Query: 412 NIDV 415
N D+
Sbjct: 695 NYDI 698
Score = 74 (31.1 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 761 HYGLASPIYTHFTSPIRRYADIIVH 785
>MGI|MGI:1919912 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071034 "CUT catabolic process" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 MGI:MGI:1919912
InterPro:IPR006596 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0006364 GO:GO:0000176 GO:GO:0000175 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 OrthoDB:EOG45B1DT
EMBL:AK012840 EMBL:AK032091 EMBL:AK129259 IPI:IPI00407764
RefSeq:NP_082591.2 UniGene:Mm.163339 ProteinModelPortal:Q9CSH3
SMR:Q9CSH3 STRING:Q9CSH3 PhosphoSite:Q9CSH3 PaxDb:Q9CSH3
PRIDE:Q9CSH3 Ensembl:ENSMUST00000042471 GeneID:72662 KEGG:mmu:72662
UCSC:uc007uuw.1 InParanoid:Q9CSH3 NextBio:336687 Bgee:Q9CSH3
CleanEx:MM_DIS3 Genevestigator:Q9CSH3 Uniprot:Q9CSH3
Length = 958
Score = 200 (75.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 62/244 (25%), Positives = 115/244 (47%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+++ NR+DL HL V ++D L +G ++V +H+AD + +I PG+ D
Sbjct: 461 EEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNALD 520
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+++ +RGT+V+L M PE L+ SLR A + ++ + I + S
Sbjct: 521 QESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKS 580
Query: 299 IIKPTYMLTYESATXXXXXXXXX---XXXXKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY A + L++ A + + R+++GA+ ++ E R
Sbjct: 581 VINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNQLAKILKKGRIEKGALTLSSPEIRFH 640
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQPQS 411
+ + E +PI +L ++ + +V E M+L ++A + F+ AL + P S
Sbjct: 641 M-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPS 697
Query: 412 NIDV 415
N D+
Sbjct: 698 NYDI 701
Score = 74 (31.1 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 764 HYGLASPIYTHFTSPIRRYADIIVH 788
>UNIPROTKB|E2RNY6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AAEX03013240
RefSeq:XP_542610.3 Ensembl:ENSCAFT00000008080 GeneID:485491
KEGG:cfa:485491 NextBio:20859485 Uniprot:E2RNY6
Length = 958
Score = 199 (75.1 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 64/248 (25%), Positives = 118/248 (47%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL HL V ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 461 EKDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 520
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNA--VTVSVV--LHSDGSIAEYS 294
+++ +RGT+V+L M PE L+ SLR CN + S + ++ D I +
Sbjct: 521 QESARRGTTVYLCEKRIDMVPELLSSNLCSLR----CNVDRLAFSCIWEMNHDAEILKVR 576
Query: 295 VDNSIIKPTYMLTYESATXXXXXXXXX---XXXXKILSEAAALRLQWRLQQGAIDTATLE 351
S+I LTY A + L++ A + + R+++GA+ ++ E
Sbjct: 577 FTKSVINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPE 636
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRG 407
R + + E +PI +L ++ + +V E M+L ++A + F+ AL +
Sbjct: 637 VRFHM-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPA 693
Query: 408 QPQSNIDV 415
P SN ++
Sbjct: 694 PPPSNYEI 701
Score = 74 (31.1 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 764 HYGLASPIYTHFTSPIRRYADIIVH 788
>TIGR_CMR|CHY_0289 [details] [associations]
symbol:CHY_0289 "ribonuclease R" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0008997 "ribonuclease R
activity" evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_359161.1 ProteinModelPortal:Q3AFC3 STRING:Q3AFC3
GeneID:3727430 KEGG:chy:CHY_0289 PATRIC:21273751
HOGENOM:HOG000071119 BioCyc:CHYD246194:GJCN-290-MONOMER
Uniprot:Q3AFC3
Length = 724
Score = 194 (73.4 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 63/237 (26%), Positives = 113/237 (47%)
Query: 180 DNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L +R+DL + ID S +L +G ++ +H+AD + Y+ GS DK
Sbjct: 238 EELKSRRDLRGEMIVTIDDEDAKDLDDAVSLKKLPNGNYQLGVHIADVSYYVREGSALDK 297
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A++RGTSV+L PM P +L+ G+ V + +T+SVV+ G + + +
Sbjct: 298 EALERGTSVYLAGKVLPMLPPELS-NGICSLNPRV-DRLTLSVVMEITPAGEVVSHEIFP 355
Query: 298 SIIKPTYMLTY---ESATXXXXXXXXXXXXXKI--LSEAAALRL---QWRLQQGAIDTAT 349
S+IK LTY + A + L E A L + + RL++GAID
Sbjct: 356 SVIKTRARLTYTIVKKAVLDKDPKAREELGDLVPMLEEMANLAMILRKRRLERGAIDFDL 415
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ + +D ++++ V + + A +L+ E M++ E +A + + YR
Sbjct: 416 PEAKVIL---DDKGEVVDI-VRRERNIAHQLIEEFMLITNETVAERFFWQEVPFLYR 468
Score = 73 (30.8 bits), Expect = 9.3e-15, Sum P(2) = 9.3e-15
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
E V ++ +++ M+ A + + H L Y FTSPIRRY DL+ H
Sbjct: 517 EERVINAVMLRSMKQARYSAER-IWHFGLAAEYYTHFTSPIRRYPDLMIH 565
>UNIPROTKB|F1RHF7 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005654
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:MPWSITE GO:GO:0071034
EMBL:FP101966 Ensembl:ENSSSCT00000010370 Uniprot:F1RHF7
Length = 752
Score = 193 (73.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 61/244 (25%), Positives = 115/244 (47%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL HL V ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 255 EKDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELENGDLEVGVHIADVSHFIRPGNALD 314
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+++ +RGT+V+L M PE L+ SLR A + ++ + I + S
Sbjct: 315 QESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTKS 374
Query: 299 IIKPTYMLTYESATXXXXXXX---XXXXXXKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY A + L++ A + + R+++GA+ ++ E R
Sbjct: 375 VINSKASLTYAEAQMRIDSAAMNDSITASLRGLNKLAKILKKRRIEKGALTLSSPEVRFH 434
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQPQS 411
+ + E +PI +L ++ + +V E M+L ++A + F+ AL + P S
Sbjct: 435 M-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPS 491
Query: 412 NIDV 415
N ++
Sbjct: 492 NYEI 495
Score = 74 (31.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 558 HYGLASPIYTHFTSPIRRYADIIVH 582
>UNIPROTKB|E1BXX6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AADN02042596
IPI:IPI00592352 RefSeq:XP_417016.2 ProteinModelPortal:E1BXX6
Ensembl:ENSGALT00000027368 GeneID:418821 KEGG:gga:418821
NextBio:20821959 Uniprot:E1BXX6
Length = 963
Score = 193 (73.0 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 65/259 (25%), Positives = 117/259 (45%)
Query: 169 KDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIH 223
+++ +FL K E ++ R+DL HL V ++D +++G ++V +H
Sbjct: 449 QNVLSFLPKMPWSITEKDMKYREDLRHLYVCSVDPPGCTDIDDALHCREIENGNLEVGVH 508
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+AD + +I PG+ D+++ +RGT+V+L M PE L+ SLR A +
Sbjct: 509 IADVSHFIRPGNALDEESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIWE 568
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATXXXXXXXXX---XXXXKILSEAAALRLQWRL 340
++ I + SII LTY A + L++ A + + R+
Sbjct: 569 MNQKAEILKTRFTKSIINSKASLTYAEAQMRIDSAAMNDDITVSLRGLNKLAKILKKKRI 628
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSF 398
GA+ ++ E R + + E +PI +L ++ + +V E M+L ++A Y F
Sbjct: 629 DNGALTLSSPEVRFHM-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANVSVAQKIYDEF 685
Query: 399 NNLAL--PYRGQPQSNIDV 415
AL + P SN D+
Sbjct: 686 PEFALLRKHPAPPPSNYDI 704
Score = 74 (31.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 767 HYGLASPIYTHFTSPIRRYADIIVH 791
>ASPGD|ASPL0000038338 [details] [associations]
symbol:AN9151 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:BN001306
GO:GO:0003723 GO:GO:0004540 EnsemblFungi:CADANIAT00009455
OMA:WIHVHVA Uniprot:C8VK46
Length = 1050
Score = 154 (59.3 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 36/126 (28%), Positives = 60/126 (47%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDG-RIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKD L VY +D S R+ +++HVA+P+ Y+ G + A
Sbjct: 553 RKDWGELPVYCVDAIDAQEIDDGISLERIPGSDSFWIHVHVANPSSYLNVGHRLIEYAAA 612
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R ++++P TYP+ P L E SL G C +T S L+ G + E +V N +++
Sbjct: 613 RLQTLYVPERTYPILPPSLTQEHFSLAPGRPC--LTFSAKLNLQGQVLESNVTNGVVRNV 670
Query: 304 YMLTYE 309
+T++
Sbjct: 671 KYITHD 676
Score = 112 (44.5 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+P+ H LGL YV+ TSP+RRY DLLAHYQ+
Sbjct: 860 RPIHHIPLGLDAYVKSTSPLRRYSDLLAHYQI 891
>UNIPROTKB|Q9KLE1 [details] [associations]
symbol:rnb "Exoribonuclease 2" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0006401 "RNA catabolic
process" evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 211 (79.3 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 108/454 (23%), Positives = 187/454 (41%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 -DGKKNWMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
G + V + A+ I P VT + + I ++ K + +L+ R+DLT
Sbjct: 139 LKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDWQLKDDADLV-REDLT 197
Query: 190 HLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNSIIKPTYMLTY 308
LP PM P LA E SL + +V A+ SV + DG I + + IK L Y
Sbjct: 258 LPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVY 317
Query: 309 ESA-----TXXXXXXXXXXXXXKILSEAAAL---RLQWRLQQGAIDTATLETRIKVANPE 360
+ T +++ + A R WR + + R +++
Sbjct: 318 DHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADN 377
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIAT---YGSFNNLALPYRGQPQSNI 413
D ++ ++ D A RLV E MI +C G+ + T +G FN A ++ + +++
Sbjct: 378 D---VVAIHA-DMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHA-GFKAEKMADV 432
Query: 414 -DVSAFAHLPEGPVRSSAIVK----IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMD 468
++ A P + A V+ + R A + + + Y + +
Sbjct: 433 VELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGN------Q 486
Query: 469 LLAHYQVGLQA-AAWVSVGAQIGDEVEVKVEEAH 501
L H+ +GL A W S + GD + ++ +AH
Sbjct: 487 PLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAH 520
>TIGR_CMR|VC_A0805 [details] [associations]
symbol:VC_A0805 "exoribonuclease II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006401 "RNA catabolic process"
evidence=ISS] [GO:0008859 "exoribonuclease II activity"
evidence=ISS] HAMAP:MF_01036 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011804
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 GO:GO:0006401
EMBL:AE003853 GenomeReviews:AE003853_GR InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 eggNOG:COG4776 KO:K01147 OMA:ERDIADW
ProtClustDB:PRK05054 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 PIR:D82415
RefSeq:NP_233191.1 ProteinModelPortal:Q9KLE1 SMR:Q9KLE1
DNASU:2612319 GeneID:2612319 KEGG:vch:VCA0805 PATRIC:20086158
Uniprot:Q9KLE1
Length = 678
Score = 211 (79.3 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 108/454 (23%), Positives = 187/454 (41%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 -DGKKNWMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
G + V + A+ I P VT + + I ++ K + +L+ R+DLT
Sbjct: 139 LKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDWQLKDDADLV-REDLT 197
Query: 190 HLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNSIIKPTYMLTY 308
LP PM P LA E SL + +V A+ SV + DG I + + IK L Y
Sbjct: 258 LPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAANIKSHARLVY 317
Query: 309 ESA-----TXXXXXXXXXXXXXKILSEAAAL---RLQWRLQQGAIDTATLETRIKVANPE 360
+ T +++ + A R WR + + R +++
Sbjct: 318 DHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADN 377
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIAT---YGSFNNLALPYRGQPQSNI 413
D ++ ++ D A RLV E MI +C G+ + T +G FN A ++ + +++
Sbjct: 378 D---VVAIHA-DMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHA-GFKAEKMADV 432
Query: 414 -DVSAFAHLPEGPVRSSAIVK----IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMD 468
++ A P + A V+ + R A + + + Y + +
Sbjct: 433 VELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIGN------Q 486
Query: 469 LLAHYQVGLQA-AAWVSVGAQIGDEVEVKVEEAH 501
L H+ +GL A W S + GD + ++ +AH
Sbjct: 487 PLPHFAMGLDVYATWTSPIRKYGDMINHRLLKAH 520
>UNIPROTKB|G3V1J5 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 InterPro:IPR022966 PROSITE:PS01175
EMBL:CH471093 EMBL:AL391384 UniGene:Hs.740506 HGNC:HGNC:20604
ChiTaRS:DIS3 ProteinModelPortal:G3V1J5 SMR:G3V1J5
Ensembl:ENST00000545453 ArrayExpress:G3V1J5 Bgee:G3V1J5
Uniprot:G3V1J5
Length = 796
Score = 186 (70.5 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 59/244 (24%), Positives = 115/244 (47%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL HL + ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 299 EKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 358
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+++ +RGT+V+L M PE L+ SL+ A + ++ + I + S
Sbjct: 359 QESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTKS 418
Query: 299 IIKPTYMLTYESATXXXXXXXXX---XXXXKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY A + L++ A + + R+++GA+ ++ E R
Sbjct: 419 VINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFH 478
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQPQS 411
+ + E +PI +L ++ + +V E M+L ++A + F+ AL + P S
Sbjct: 479 M-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPS 535
Query: 412 NIDV 415
N ++
Sbjct: 536 NYEI 539
Score = 73 (30.8 bits), Expect = 9.4e-14, Sum P(2) = 9.4e-14
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 602 HYGLASPIYTHFTSPIRRYADVIVH 626
>UNIPROTKB|Q9Y2L1 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0000178 "exosome (RNase complex)" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP]
[GO:0004519 "endonuclease activity" evidence=IMP] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005829 GO:GO:0005654 GO:GO:0003723
GO:GO:0005085 GO:GO:0004519 GO:GO:0016075 GO:GO:0006364
EMBL:AL138695 GO:GO:0000176 GO:GO:0000175 GO:GO:0043928
eggNOG:COG0557 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 OMA:MPWSITE SMART:SM00670 EMBL:CH471093
GO:GO:0071034 EMBL:AL391384 EMBL:AF330044 EMBL:AB023225
EMBL:AL832266 EMBL:AK314715 EMBL:AL080158 EMBL:BC056143
IPI:IPI00183462 IPI:IPI00746351 PIR:JE0110 RefSeq:NP_001121698.1
RefSeq:NP_055768.3 UniGene:Hs.740506 ProteinModelPortal:Q9Y2L1
SMR:Q9Y2L1 IntAct:Q9Y2L1 STRING:Q9Y2L1 PhosphoSite:Q9Y2L1
DMDM:73620993 SWISS-2DPAGE:Q9Y2L1 PaxDb:Q9Y2L1 PRIDE:Q9Y2L1
Ensembl:ENST00000377767 Ensembl:ENST00000377780 GeneID:22894
KEGG:hsa:22894 UCSC:uc001vix.4 UCSC:uc001viy.4 CTD:22894
GeneCards:GC13M073329 H-InvDB:HIX0011365 HGNC:HGNC:20604
HPA:HPA039281 MIM:607533 neXtProt:NX_Q9Y2L1 PharmGKB:PA162383628
InParanoid:Q9Y2L1 OrthoDB:EOG45B1DT PhylomeDB:Q9Y2L1 ChiTaRS:DIS3
GenomeRNAi:22894 NextBio:43511 ArrayExpress:Q9Y2L1 Bgee:Q9Y2L1
CleanEx:HS_DIS3 Genevestigator:Q9Y2L1 GermOnline:ENSG00000083520
Uniprot:Q9Y2L1
Length = 958
Score = 186 (70.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 59/244 (24%), Positives = 115/244 (47%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL HL + ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 461 EKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 520
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+++ +RGT+V+L M PE L+ SL+ A + ++ + I + S
Sbjct: 521 QESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTKS 580
Query: 299 IIKPTYMLTYESATXXXXXXXXX---XXXXKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY A + L++ A + + R+++GA+ ++ E R
Sbjct: 581 VINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFH 640
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQPQS 411
+ + E +PI +L ++ + +V E M+L ++A + F+ AL + P S
Sbjct: 641 M-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPS 697
Query: 412 NIDV 415
N ++
Sbjct: 698 NYEI 701
Score = 73 (30.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 764 HYGLASPIYTHFTSPIRRYADVIVH 788
>ASPGD|ASPL0000011287 [details] [associations]
symbol:AN3657 species:162425 "Emericella nidulans"
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005730 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0004521
GO:GO:0000049 GO:GO:0071039 GO:GO:0071035 GO:GO:0071038
GO:GO:0000467 GO:GO:0070651 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028 RefSeq:XP_661261.1
ProteinModelPortal:Q5B723 SMR:Q5B723 STRING:Q5B723
EnsemblFungi:CADANIAT00005078 GeneID:2873078 KEGG:ani:AN3657.2
Uniprot:Q5B723
Length = 1015
Score = 173 (66.0 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 57/225 (25%), Positives = 98/225 (43%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L + +ID A +L +G +V +H+AD + +++P + D +A R
Sbjct: 503 RRDLRDLLICSIDPPGCQDIDDALHARKLPNGNFEVGVHIADVSHFVKPNNAMDLEASVR 562
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GT+V+L M P L + SL+ A +V + D + S+I+
Sbjct: 563 GTTVYLVDKRIDMLPHLLGTDLCSLKPYVERYAFSVLWEMTPDAEVVSADFTKSVIRSRE 622
Query: 305 MLTYESATXXX---XXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+YE A + L + + Q R+ GA++ A+ E RI+ N E
Sbjct: 623 AFSYEQAQLRIDDPSKTDELTESMRTLLHLSKILRQKRMDAGALNLASPEVRIEADNDEV 682
Query: 362 PEPIINLYVEDQADPAMR-LVSEMMILCGEAIAT--YGSFNNLAL 403
+P+ + V+ +A A LV E M+ +A Y +F A+
Sbjct: 683 GDPLAD--VKTKAMLATNSLVEEFMLHANITVAAKIYSTFPQTAM 725
Score = 87 (35.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
RH L P Y FTSPIRRY DLL H Q+
Sbjct: 804 RHYGLASPIYTHFTSPIRRYADLLVHRQL 832
>TIGR_CMR|GSU_1485 [details] [associations]
symbol:GSU_1485 "ribonuclease R, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0008997 "ribonuclease R
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573
OMA:FGFLIPD TIGRFAMs:TIGR02063 HOGENOM:HOG000071119
RefSeq:NP_952536.1 ProteinModelPortal:Q74D34 GeneID:2686169
KEGG:gsu:GSU1485 PATRIC:22025817 ProtClustDB:CLSK828384
BioCyc:GSUL243231:GH27-1468-MONOMER Uniprot:Q74D34
Length = 763
Score = 180 (68.4 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 57/234 (24%), Positives = 105/234 (44%)
Query: 181 NLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R DL ID S R + G I++++ +AD + Y++PGS D++
Sbjct: 239 DVAKRVDLRERLTVTIDGETARDFDDAVSVQREKGGDIRLWVSIADVSHYVKPGSALDRE 298
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+ P PM PE+L+ SL +T ++ G+I S S+I
Sbjct: 299 AYLRGTSVYFPDRCIPMLPEELSNGICSLNPQVERLTLTAEMLFTRSGAIKSSSFYPSVI 358
Query: 301 KPTYMLTYESATX--------XXXXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATLET 352
+ LTY + +++ E A ++ R ++G+ID E
Sbjct: 359 RSAARLTYTTVRKVLVDGDPEAIKANRHLVDDLEVMKELALRLMEKRKKRGSIDFDLPEP 418
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+I V + + ++++ + + + A R++ E M+ EA+A++ + YR
Sbjct: 419 QI-VLDLQGE--MVDI-IRSERNLAHRIIEEFMLAANEAVASHIEERGIPSLYR 468
Score = 75 (31.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
PE + + +++ M+ A + H L Y FTSPIRRY DL+ H
Sbjct: 515 PEERMINEVLLRCMKQARYSHEN-LGHFGLAARCYTHFTSPIRRYPDLVVH 564
>POMBASE|SPBC26H8.10 [details] [associations]
symbol:dis3 "3'-5' exoribonuclease subunit Dis3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000465 "exonucleolytic
trimming to generate mature 5'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008536 "Ran GTPase binding" evidence=IPI] [GO:0032853
"positive regulation of Ran GTPase activity" evidence=IMP]
[GO:0034661 "ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001900 InterPro:IPR003029
Pfam:PF00773 PROSITE:PS50126 SMART:SM00955 PomBase:SPBC26H8.10
InterPro:IPR006596 GO:GO:0051301 GO:GO:0007067 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0040008 GO:GO:0004521
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 EMBL:M74094 PIR:A41944
RefSeq:NP_596653.1 ProteinModelPortal:P37202 SMR:P37202
STRING:P37202 PRIDE:P37202 EnsemblFungi:SPBC26H8.10.1
GeneID:2540398 KEGG:spo:SPBC26H8.10 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH BRENDA:3.1.13.1 NextBio:20801525 GO:GO:0000465
GO:GO:0032853 SMART:SM00670 Uniprot:P37202
Length = 970
Score = 165 (63.1 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 59/238 (24%), Positives = 104/238 (43%)
Query: 184 NRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKD + +ID A L +G +V +H+AD T +++P + D +A
Sbjct: 495 NRKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAAS 554
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+L M P L + SLR A + + + +I + S+I
Sbjct: 555 RGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASK 614
Query: 304 YMLTYESATXXXXXXXXX---XXXXKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
+Y A ++L + + + Q R+ +GA++ A+ E RI+ N E
Sbjct: 615 EAFSYADAQARIDDQKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDN-E 673
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLALPYR--GQPQSNID 414
+P+ ++ ++ + LV E M+L ++A Y +F A+ R P +N D
Sbjct: 674 TSDPM-DVEIKQLLE-TNSLVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNFD 729
Score = 92 (37.4 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 442 FRKP-VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDE 492
F P RH L P Y FTSPIRRY D+LAH Q+ A + ++ + D+
Sbjct: 789 FAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLAA-AIDYETINPSLSDK 839
>UNIPROTKB|G4MRS6 [details] [associations]
symbol:MGG_13800 "Mitochondrial protein cyt-4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 EMBL:CM001231 GO:GO:0043581
GO:GO:0004540 RefSeq:XP_003710903.1 ProteinModelPortal:G4MRS6
EnsemblFungi:MGG_13800T0 GeneID:5049017 KEGG:mgr:MGG_13800
Uniprot:G4MRS6
Length = 1091
Score = 151 (58.2 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 44/123 (35%), Positives = 64/123 (52%)
Query: 366 INLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS--NIDV------S 416
IN+ ++ D A LV+ MIL GE + + +PYR PQ+ NIDV +
Sbjct: 782 INVGIQSDAAGQVSNLVTNSMILAGEIAGRWCEDRGIPVPYRTMPQATMNIDVLLPWVKN 841
Query: 417 AFAHLPEG---PVRSS-AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
F L E P A++K + A+ P H LGL YV+ TSP+RRY+D++AH
Sbjct: 842 HFYPLLEANETPAPEHYALIKQLAGPALLSTNPGLHFWLGLKHYVKVTSPLRRYLDIVAH 901
Query: 473 YQV 475
+Q+
Sbjct: 902 FQI 904
Score = 99 (39.9 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 30/119 (25%), Positives = 52/119 (43%)
Query: 184 NRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQD-GRIKVYIHVADPTKYIEPGSLSDKDAM 242
+RKD L +AID S R G+ +++HVAD + P S + A
Sbjct: 547 SRKDWGDLTAFAIDDAKTEDIDDAVSVERTSTAGQYWIHVHVADVASIVRPNSAHAQYAE 606
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
K + + P M P+ ++ +SL G A+T S +++ G + E + I++
Sbjct: 607 KLSETHYYPGHFARMLPDLGILQHLSLAPGS--RALTFSGLVNEKGELLECKITPGILR 663
Score = 51 (23.0 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 6 AVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNK-SNLGFRLPACRSERQFLNRSGS 64
A NS S S+ P VS + C S +RN S+L L + +S+ + + G
Sbjct: 19 ASNSLSPTGSSLRRPTVSKTLASCKNLSTSSSYKRNSLSSLFNELDSVKSKSESDDAHGR 78
Query: 65 QSCSVHSLVDSVMQELVAIRKRLRVF 90
V SL++ + E + R+RL+ +
Sbjct: 79 ----VDSLLEGEIPEWLPTRERLKAW 100
Score = 46 (21.3 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 76 VMQEL-VAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLE 117
++Q L +A R F+ + GELLE K+ +L+K + +E
Sbjct: 627 ILQHLSLAPGSRALTFSGLVNEKGELLECKITPGILRKVVNIE 669
>DICTYBASE|DDB_G0278757 [details] [associations]
symbol:DDB_G0278757 "DIS3-like exonuclease 2"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0278757 GO:GO:0003723 EMBL:AAFI02000024
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
RefSeq:XP_641919.1 ProteinModelPortal:Q54XT5
EnsemblProtists:DDB0206173 GeneID:8621677 KEGG:ddi:DDB_G0278757
InParanoid:Q54XT5 OMA:EICTIDP ProtClustDB:CLSZ2447996
Uniprot:Q54XT5
Length = 1343
Score = 173 (66.0 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 44/142 (30%), Positives = 68/142 (47%)
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTK 229
D S +E +L R+DL +L++ ID + L+DG +V +H+AD +
Sbjct: 815 DQSKLWLPSEQDLKGRRDLRNLEICTIDPDTAKDLDDALHCIELEDGNFEVGVHIADVSH 874
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
+++P + DK A ++ T+V+L PM P L+ E SL G A +V L G
Sbjct: 875 FVKPDTALDKCAQRKATTVYLVQKAIPMLPSLLSEELCSLNMGVERLAFSVIWKLSPTGE 934
Query: 290 IAEYSVDNSIIKPTYMLTYESA 311
I + S+IK LTY A
Sbjct: 935 ILDEWFGRSVIKSFSRLTYAIA 956
Score = 84 (34.6 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L P Y FTSPIRRY D++ H
Sbjct: 1151 RHYALNAPFYTHFTSPIRRYADIIVH 1176
>CGD|CAL0003527 [details] [associations]
symbol:orf19.5229 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001900
InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
CGD:CAL0003527 InterPro:IPR006596 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 SMART:SM00670 EMBL:AACQ01000070
EMBL:AACQ01000071 RefSeq:XP_716298.1 RefSeq:XP_716360.1
ProteinModelPortal:Q5A3P1 SMR:Q5A3P1 STRING:Q5A3P1 GeneID:3641956
GeneID:3642063 KEGG:cal:CaO19.12694 KEGG:cal:CaO19.5229
Uniprot:Q5A3P1
Length = 1004
Score = 171 (65.3 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 68/255 (26%), Positives = 110/255 (43%)
Query: 170 DISNFLQKAED-NLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPT 228
DI+N ED L R DL V +ID A +L +G +V +H+AD T
Sbjct: 522 DITN---NTEDPQLQKRVDLRDKLVCSIDPPNCVDIDDALHAKQLPNGNYEVGVHIADVT 578
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
+++P + D++ RGTSV+L M P+ L SL+ A +V + D
Sbjct: 579 HFVKPNTPLDQEGASRGTSVYLVDKRIDMLPQLLGTNLCSLKPFVDRFAFSVIWEVDEDA 638
Query: 289 SIAEYSVDNSIIKPTYMLTYESATXXXXXXXXXXXXXK---ILSEAAALRLQWRLQQGAI 345
+I + SIIK +YE A K IL + + Q RL GA+
Sbjct: 639 NIVNVNYMKSIIKSRQAFSYEQAQLRIDDPSQQDDLTKSMRILLKLSKKLKQKRLDAGAL 698
Query: 346 DTATLETRIKV-ANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNL 401
+ A+ E ++ + + DP+ + I +E + LV E M+ ++A Y ++
Sbjct: 699 NLASPEVKVHMDSETSDPQEVEIKKLLETNS-----LVEEFMLFANISVARKIYDAYPQT 753
Query: 402 ALPYR--GQPQSNID 414
A+ R P +N +
Sbjct: 754 AMLRRHAAPPATNFE 768
Score = 80 (33.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
RH L + Y FTSPIRRY D++AH Q+
Sbjct: 835 RHYGLAVDIYTHFTSPIRRYCDVVAHRQL 863
>ASPGD|ASPL0000054659 [details] [associations]
symbol:AN1158 species:162425 "Emericella nidulans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0032153 "cell division site"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0060237 "regulation of fungal-type cell wall
organization" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:2000115 "regulation of maintenance
of bipolar cell polarity regulating cell shape" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:AACD01000016
EMBL:BN001308 GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557
OrthoDB:EOG4MGWGN HOGENOM:HOG000207194 OMA:DIFICGS
RefSeq:XP_658762.1 ProteinModelPortal:Q5BE72 STRING:Q5BE72
EnsemblFungi:CADANIAT00001468 GeneID:2876936 KEGG:ani:AN1158.2
Uniprot:Q5BE72
Length = 1374
Score = 158 (60.7 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 43/141 (30%), Positives = 72/141 (51%)
Query: 173 NFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIE 232
N+ +E +L +R+D + I+ L DG+ ++ IHV D +++
Sbjct: 744 NWSISSEGDLSSRRDFRQETTFTIEPTGTSELDNAYHFKALPDGKAEIGIHVTDIAHFVK 803
Query: 233 PGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD---GS 289
P SL D++A KRGT+V+L M P ++A E +L GE +TVSVV ++ G+
Sbjct: 804 PNSLVDREAKKRGTAVYLVDRLVKMLPPRIATELCALLPGE--ERLTVSVVFKANPETGA 861
Query: 290 IAE-YSVDNSIIKPTYMLTYE 309
I + + SIIK + L ++
Sbjct: 862 IDDDIWIGKSIIKSSGKLGFD 882
Score = 94 (38.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 426 VRSSAIVKIMRAAAI-DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVS 484
V+S K A + D +P H L LP Y FT+P+RRY D++ H Q L+A +S
Sbjct: 1035 VKSMQRAKYYVAGTVQDEMRP--HYTLNLPVYTHFTNPLRRYADVIVHRQ--LEAV--LS 1088
Query: 485 VGA-QIGDEVE 494
GA + D+VE
Sbjct: 1089 DGAIEFSDDVE 1099
>SGD|S000005381 [details] [associations]
symbol:DIS3 "Exosome core complex catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IDA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IMP]
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004521
"endoribonuclease activity" evidence=IMP;IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IGI;IMP;IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0000049 "tRNA
binding" evidence=IDA;IMP] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=IC] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC]
InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 SGD:S000005381 InterPro:IPR006596 GO:GO:0005739
GO:GO:0005730 EMBL:BK006948 GO:GO:0004521 GO:GO:0000049
GO:GO:0071039 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 OMA:MPWSITE OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028
PDB:2WP8 PDBsum:2WP8 EMBL:D76430 EMBL:Z74763 PIR:S66704
RefSeq:NP_014621.1 PDB:2VNU PDBsum:2VNU ProteinModelPortal:Q08162
SMR:Q08162 DIP:DIP-2355N IntAct:Q08162 MINT:MINT-614156
STRING:Q08162 PaxDb:Q08162 PeptideAtlas:Q08162 EnsemblFungi:YOL021C
GeneID:854138 KEGG:sce:YOL021C CYGD:YOL021c
EvolutionaryTrace:Q08162 NextBio:975871 Genevestigator:Q08162
GermOnline:YOL021C Uniprot:Q08162
Length = 1001
Score = 167 (63.8 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 63/248 (25%), Positives = 108/248 (43%)
Query: 178 AEDNLLN-RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSL 236
++D LL RKDL + +ID A +L +G +V +H+AD T +++PG+
Sbjct: 523 SKDPLLTKRKDLRDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTA 582
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D + RGTSV+L M P L + SL+ A +V L +I +
Sbjct: 583 LDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFM 642
Query: 297 NSIIKPTYMLTYESATXXXXXXXXXXXXX---KILSEAAALRLQWRLQQGAIDTATLETR 353
S+I+ +YE A + L + + Q RL+ GA++ A+ E +
Sbjct: 643 KSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVK 702
Query: 354 IKV-ANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLALPYR--G 407
+ + + DP + I + + LV E M+L ++A Y +F A+ R
Sbjct: 703 VHMDSETSDPNEVEIKKLLATNS-----LVEEFMLLANISVARKIYDAFPQTAMLRRHAA 757
Query: 408 QPQSNIDV 415
P +N ++
Sbjct: 758 PPSTNFEI 765
Score = 80 (33.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
RH L + Y FTSPIRRY D++AH Q+
Sbjct: 830 RHYGLAVDIYTHFTSPIRRYCDVVAHRQL 858
>UNIPROTKB|H7C440 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:AC013435
GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175 EMBL:AC019130
EMBL:AC068134 EMBL:AC093374 EMBL:AC138658 HGNC:HGNC:28648
ChiTaRS:DIS3L2 EMBL:AC105461 ProteinModelPortal:H7C440
Ensembl:ENST00000424049 Bgee:H7C440 Uniprot:H7C440
Length = 383
Score = 152 (58.6 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 43/129 (33%), Positives = 62/129 (48%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID S L DG KV +H+AD + ++ GS DK A +R
Sbjct: 6 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAER 65
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+L PM P L E SL + + +T SV+ L +G I + +II+
Sbjct: 66 ATSVYLVQKVVPMLPRLLCEELCSLNP--MSDKLTFSVIWTLTPEGKILDEWFGRTIIRS 123
Query: 303 TYMLTYESA 311
L+YE A
Sbjct: 124 CTKLSYEHA 132
Score = 82 (33.9 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D+L H
Sbjct: 322 RHYALNVPLYTHFTSPIRRFADVLVH 347
>TIGR_CMR|CBU_1091 [details] [associations]
symbol:CBU_1091 "ribonuclease R" species:227377 "Coxiella
burnetii RSA 493" [GO:0008997 "ribonuclease R activity"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD
TIGRFAMs:TIGR02063 RefSeq:NP_820090.2 ProteinModelPortal:Q83CM3
PRIDE:Q83CM3 GeneID:1208992 KEGG:cbu:CBU_1091 PATRIC:17930913
ProtClustDB:CLSK914532 BioCyc:CBUR227377:GJ7S-1084-MONOMER
Uniprot:Q83CM3
Length = 749
Score = 167 (63.8 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 58/226 (25%), Positives = 92/226 (40%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL L ID G K+Y+ +AD + Y+ S DK+ R
Sbjct: 277 RKDLRKLPFMTIDGEDARDFDDAVYCESKSSGW-KLYVAIADVSHYVSRESALDKEGQLR 335
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ P+ PM PE L+ SL + A+ + L + G +++Y ++I
Sbjct: 336 GNSVYFPSKVIPMLPEALSNNLCSLVPNKDRLAIVCEIHLTAKGKVSKYQFYEAVIHSHA 395
Query: 305 MLTYESATXXXXXXXXXXXXX----KILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
LTY K L + L+ R+ +GAI+ T ETRI+
Sbjct: 396 RLTYTQVAAMLRGEKTKNEEMLPHIKNLDQLYQNLLRQRINRGAIEFETTETRIQF---- 451
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
D + I V + A R++ E M++ + + + N+ YR
Sbjct: 452 DQKGKIKRIVPVVRNEAHRIIEECMLVANVSASHFLQEKNIPTLYR 497
Score = 73 (30.8 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ + + +++ +R A I + H L Y FTSPIRRY DLL H
Sbjct: 543 PDAHLLQTVMLRSLRQA-IYTPEDGGHFGLSYERYCHFTSPIRRYPDLLVH 592
>TIGR_CMR|SPO_3330 [details] [associations]
symbol:SPO_3330 "ribonuclease R" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003723 GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967 SMART:SM00316
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 TIGRFAMs:TIGR00358
KO:K12573 TIGRFAMs:TIGR02063 RefSeq:YP_168526.1
ProteinModelPortal:Q5LN82 GeneID:3193934 KEGG:sil:SPO3330
PATRIC:23380111 HOGENOM:HOG000071121 OMA:NLRRYAH
ProtClustDB:CLSK934129 Uniprot:Q5LN82
Length = 752
Score = 132 (51.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 58/240 (24%), Positives = 97/240 (40%)
Query: 164 EKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQD----GRIK 219
+ F K I L R+DL + + ID A D G
Sbjct: 228 DDFPDKVIEEADSAKPQGLSGRQDLRDMALVTIDPSDARDHDDACFAHADDDPKNPGGHV 287
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT 279
+++ +AD Y+ GS D++A KRG S + P PM P++L+ + SL +G +
Sbjct: 288 IWVAIADVAAYVRAGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIA 347
Query: 280 VSVVLHSDGSIAEYSVDNSIIKPTYMLTYES---ATXXXXXXXXXXXXXKILSE--AAAL 334
V + + + G+ + +++ L Y+ A ++L+ AA
Sbjct: 348 VRMQIDAQGNKIGHRFVRGMMRSVASLNYQEVQDAIDGSPNDKTGPLLDEVLTPLYAAYK 407
Query: 335 RLQW-RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA 393
L R ++ +D E RI V N D + ++ D+ D A +L+ E MIL A A
Sbjct: 408 ALDAERDRRQPLDLDLPERRI-VLN--DKGHVESVAFRDRLD-AHKLIEEFMILANVAAA 463
Score = 110 (43.8 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 34/108 (31%), Positives = 49/108 (45%)
Query: 390 EAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI-VKIMRAAAIDFRKPVRH 448
EA+ + L L +GQ ++A H G + I + +R+ A + P
Sbjct: 487 EALRETAQASGLTLA-KGQVLQTRHLNALLHQAAGTDEAELINISTLRSMAQAYYNPENF 545
Query: 449 GVLGLP--GYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVE 494
G GL Y FTSPIRRY DL+ H + ++A W G DE+E
Sbjct: 546 GHFGLALKNYAHFTSPIRRYSDLIVHRGL-IKAHGWGDDGLT-ADEIE 591
>UNIPROTKB|G4NDV8 [details] [associations]
symbol:MGG_00193 "Mitotic control protein dis3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773
PROSITE:PS50126 SMART:SM00955 InterPro:IPR006596 GO:GO:0005730
EMBL:CM001235 GO:GO:0004521 GO:GO:0000049 GO:GO:0071039
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 KO:K12585
SMART:SM00670 GO:GO:0071028 RefSeq:XP_003718924.1
ProteinModelPortal:G4NDV8 SMR:G4NDV8 EnsemblFungi:MGG_00193T0
GeneID:2674544 KEGG:mgr:MGG_00193 Uniprot:G4NDV8
Length = 990
Score = 163 (62.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 61/238 (25%), Positives = 106/238 (44%)
Query: 184 NRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DL L + +ID A L +G +V +H+AD + +++P + D +A
Sbjct: 522 DREDLRGLLICSIDPIGCQDIDDALHARPLPNGNFEVGVHIADVSHFVKPSNAMDTEASI 581
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+L M P L + SL+ A +V L D I S+IK
Sbjct: 582 RGTTVYLVDKRIDMLPMLLGTDLCSLKPYVERFAFSVLWELTPDADIVNARFTKSVIKSR 641
Query: 304 YMLTYESATXXXXXXXXXXXXXKILSEAAAL--RL-QWRLQQGAIDTATLETRIKVANPE 360
+YE+A + AL +L Q R+ GA+ ++ E ++++ + E
Sbjct: 642 EAFSYEAAQIRVDDASQQDELTTGIRTLLALSKKLKQKRMDAGALSLSSPEVKVQMES-E 700
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLALPYR--GQPQSNID 414
+PI ++ + + M LV E M+L ++A Y + A+ R P++N D
Sbjct: 701 TSDPI-DIKTKVHLE-TMSLVEEFMLLANISVARKIYEASPQTAILRRHGAPPKTNFD 756
Score = 80 (33.2 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
RH L Y FTSPIRRY DL+AH Q+
Sbjct: 822 RHYGLASEIYTHFTSPIRRYADLVAHRQL 850
>ZFIN|ZDB-GENE-070705-171 [details] [associations]
symbol:si:ch211-273k1.4 "si:ch211-273k1.4"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070705-171 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BX001029 IPI:IPI00499069 Ensembl:ENSDART00000083272
Uniprot:E7F350
Length = 995
Score = 141 (54.7 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 39/132 (29%), Positives = 63/132 (47%)
Query: 182 LLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
L R+DL ++ ID S +L DG +V +H+AD + +++ G+ D+ A
Sbjct: 498 LSTRRDLRKECIFTIDPATARDLDDALSCKQLSDGNFEVGVHIADVSYFVKEGNALDELA 557
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSI 299
+R TSV+L PM P L E SL + + +T SV+ L +G I ++
Sbjct: 558 GQRATSVYLVQKVIPMLPRLLCEELCSLNP--LTDRLTFSVIWKLSPEGKILSEWFGRTV 615
Query: 300 IKPTYMLTYESA 311
I L+Y+ A
Sbjct: 616 ICSCIKLSYDHA 627
Score = 100 (40.3 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG--LQAAAWVSVGAQIGDEVE 494
A A+ K RH L +P Y FTSPIRRY D++ H +G L +SV G+EV
Sbjct: 807 AGALKDEKLFRHYALNVPLYTHFTSPIRRYADVIVHRLLGASLNCGPRLSVS---GEEVH 863
Query: 495 VKVEEAHPR 503
+ + R
Sbjct: 864 QQASHCNDR 872
>DICTYBASE|DDB_G0288469 [details] [associations]
symbol:DDB_G0288469 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0288469 GO:GO:0003723
EMBL:AAFI02000111 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_636708.1
ProteinModelPortal:Q54IW8 EnsemblProtists:DDB0219344 GeneID:8626640
KEGG:ddi:DDB_G0288469 InParanoid:Q54IW8 OMA:FEMERES
ProtClustDB:CLSZ2429881 Uniprot:Q54IW8
Length = 960
Score = 190 (71.9 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 69/299 (23%), Positives = 126/299 (42%)
Query: 192 KVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
K +AID + +G V +H+AD T ++P S DK + +S++LP
Sbjct: 541 KSFAIDSESTKDVDDAIGLIDEGNGEYSVIVHIADVTDIVKPHSDHDKWGQFKSSSIYLP 600
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY----SVDNSIIKPTYMLT 307
TY M P + +SL + ++ + + G I +Y S+ N++IK +Y
Sbjct: 601 HKTYFMLPNSITNH-LSLSPNKSNKCLSFQFKVSNKGEIIDYKIFPSIVNNLIKTSYNKV 659
Query: 308 YESATXXXXXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-----DP 362
E++ + E L+ + + + + ++ P D
Sbjct: 660 -ENSLLDSNSSNNNKNTIHSIDEIKQLKKLFEISTLLKERREINKPYRIDLPSIKINVDN 718
Query: 363 EPIINLYVEDQADPAM--RLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--DVSAF 418
+I++ +DQ + + +LVSE MI G + + N + +PYR Q + I +
Sbjct: 719 NGLIDV-CQDQRENEISNQLVSEFMIATGYISSLFAIENGIDIPYRVQSKPVITGEYDLE 777
Query: 419 AHLPE-GPVRSSAIV-KIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + P+ S + +I + + + H L L Y TSPIRRY D++ H Q+
Sbjct: 778 NEIEKLHPITSLLVASRIQESGEVSISN-IGHHSLALDNYTWATSPIRRYPDIIVHSQI 835
>MGI|MGI:2442555 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S.
cerevisiae)-like 2" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0007067 "mitosis" evidence=ISO] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051306 "mitotic sister chromatid separation"
evidence=ISO] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
MGI:MGI:2442555 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 GO:GO:0051306
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 HOVERGEN:HBG107810
EMBL:AK031180 EMBL:BC036177 IPI:IPI00229771 IPI:IPI00881442
RefSeq:NP_001165628.1 RefSeq:NP_705758.1 UniGene:Mm.389152
ProteinModelPortal:Q8CI75 SMR:Q8CI75 STRING:Q8CI75
PhosphoSite:Q8CI75 PaxDb:Q8CI75 PRIDE:Q8CI75
Ensembl:ENSMUST00000065694 Ensembl:ENSMUST00000168237 GeneID:208718
KEGG:mmu:208718 UCSC:uc007bvu.2 UCSC:uc007bvv.2
HOGENOM:HOG000017705 InParanoid:Q8CI75 OMA:VQKRVYC
OrthoDB:EOG415GCR NextBio:372395 Bgee:Q8CI75 Genevestigator:Q8CI75
Uniprot:Q8CI75
Length = 870
Score = 156 (60.0 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 43/134 (32%), Positives = 65/134 (48%)
Query: 180 DNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R+DL ++ ID + RL DG +V +H+AD + ++ GS DK
Sbjct: 364 DEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDK 423
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDN 297
A +R TSV+L PM P L E SL + + +T SV+ L +G I E
Sbjct: 424 VAAERATSVYLVQKVVPMLPRLLCEELCSLNP--MTDKLTFSVIWKLTPEGKILEEWFGR 481
Query: 298 SIIKPTYMLTYESA 311
+II+ L+Y+ A
Sbjct: 482 TIIRSCTKLSYDHA 495
Score = 80 (33.2 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D++ H
Sbjct: 685 RHYALNVPLYTHFTSPIRRFADVIVH 710
>UNIPROTKB|Q8IYB7 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0051306 "mitotic sister
chromatid separation" evidence=IMP] [GO:0008285 "negative
regulation of cell proliferation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 Orphanet:654
GO:GO:0051306 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
EMBL:AK094293 EMBL:AL834174 EMBL:BX648325 EMBL:AF443854
EMBL:AC019130 EMBL:AC068134 EMBL:AC093374 EMBL:AC138658
EMBL:BC026166 EMBL:BC036113 IPI:IPI00167753 IPI:IPI00217752
IPI:IPI00385160 IPI:IPI00465384 IPI:IPI00880048
RefSeq:NP_001244210.1 RefSeq:NP_001244211.1 RefSeq:NP_689596.4
UniGene:Hs.732236 ProteinModelPortal:Q8IYB7 IntAct:Q8IYB7
MINT:MINT-1386910 STRING:Q8IYB7 PhosphoSite:Q8IYB7 DMDM:296439471
PaxDb:Q8IYB7 PRIDE:Q8IYB7 DNASU:129563 Ensembl:ENST00000273009
Ensembl:ENST00000325385 Ensembl:ENST00000360410
Ensembl:ENST00000390005 Ensembl:ENST00000409307
Ensembl:ENST00000409401 Ensembl:ENST00000433430
Ensembl:ENST00000445090 GeneID:129563 KEGG:hsa:129563
UCSC:uc010fxz.3 CTD:129563 GeneCards:GC02P232825 H-InvDB:HIX0002923
HGNC:HGNC:28648 HPA:HPA035797 MIM:267000 MIM:614184
neXtProt:NX_Q8IYB7 Orphanet:2849 PharmGKB:PA162383714
HOVERGEN:HBG107810 InParanoid:Q8IYB7 OMA:HIYEYRE ChiTaRS:DIS3L2
GenomeRNAi:129563 NextBio:82609 ArrayExpress:Q8IYB7 Bgee:Q8IYB7
CleanEx:HS_DIS3L2 Genevestigator:Q8IYB7 Uniprot:Q8IYB7
Length = 885
Score = 152 (58.6 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 43/129 (33%), Positives = 62/129 (48%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID S L DG KV +H+AD + ++ GS DK A +R
Sbjct: 371 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAER 430
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+L PM P L E SL + + +T SV+ L +G I + +II+
Sbjct: 431 ATSVYLVQKVVPMLPRLLCEELCSLNP--MSDKLTFSVIWTLTPEGKILDEWFGRTIIRS 488
Query: 303 TYMLTYESA 311
L+YE A
Sbjct: 489 CTKLSYEHA 497
Score = 82 (33.9 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D+L H
Sbjct: 687 RHYALNVPLYTHFTSPIRRFADVLVH 712
>RGD|1560168 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like
2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007067 "mitosis"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0051306 "mitotic sister chromatid
separation" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 RGD:1560168 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
OrthoDB:EOG415GCR IPI:IPI00950040 Ensembl:ENSRNOT00000066216
UCSC:RGD:1560168 ArrayExpress:D3ZWJ4 Uniprot:D3ZWJ4
Length = 884
Score = 152 (58.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 42/129 (32%), Positives = 63/129 (48%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID S +L DG +V +H+AD + ++ GS DK A +R
Sbjct: 383 RRDLRKDCIFTIDPSTARDLDDALSCRQLTDGTFEVGVHIADVSYFVPEGSSLDKVAAER 442
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+L PM P L E SL + + +T SV+ L +G I E +II+
Sbjct: 443 ATSVYLVQKVVPMLPRLLCEELCSLNP--MTDKLTFSVIWKLTPEGKILEEWFGRTIIRS 500
Query: 303 TYMLTYESA 311
L+Y+ A
Sbjct: 501 CTKLSYDHA 509
Score = 80 (33.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D++ H
Sbjct: 699 RHYALNVPLYTHFTSPIRRFADVIVH 724
>TIGR_CMR|CPS_4617 [details] [associations]
symbol:CPS_4617 "ribonuclease R" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008997 "ribonuclease R activity"
evidence=ISS] [GO:0016075 "rRNA catabolic process" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_271264.1 ProteinModelPortal:Q47VA8 STRING:Q47VA8
GeneID:3520956 KEGG:cps:CPS_4617 PATRIC:21472057
BioCyc:CPSY167879:GI48-4626-MONOMER Uniprot:Q47VA8
Length = 826
Score = 134 (52.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 57/225 (25%), Positives = 92/225 (40%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + L RKDL L + ID + G ++++ +AD + Y++ G+ D
Sbjct: 262 ESSKLPRKDLRDLPLVTIDGDDARDFDDAVYCEPKKSGGWRLWVAIADVSYYVQHGTALD 321
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSL-----RQGEVCNAVTVSVVLHSDGSIAEY 293
+A+ RG SV+ P+ PM PEKL+ SL R VC +T+S GS
Sbjct: 322 DEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCE-MTISATGKLSGSKFYP 380
Query: 294 SVDNSIIKPTYMLT---YESATXXXXXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATL 350
+V S + TY + K L RL++GAI T
Sbjct: 381 AVMRSHARFTYTKVAAILDGDEALCQEYQTLVPDLKNLEHMYHALTDARLKRGAIAFETQ 440
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
E+ I + N + + + + A +++ E MI+ A A +
Sbjct: 441 ES-IFIFNEDKKIASVEALIRNDAH---KIIEECMIMANVATAKF 481
Score = 98 (39.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 394 TYGSFNNLALPYRGQPQSNI--DVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV 450
TY + L+LP + P+ D+ A A P+ + + +++ MR A G
Sbjct: 507 TYLNELGLSLPSKEAPEPRDYGDILAKVAGRPDQELIQTMLLRSMRQAVYQSDNEGHFG- 565
Query: 451 LGLPGYVQFTSPIRRYMDLLAH 472
L LP Y FTSPIRRY DL+ H
Sbjct: 566 LALPSYSHFTSPIRRYPDLVVH 587
>UNIPROTKB|F1N1R4 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 EMBL:DAAA02033486 EMBL:DAAA02033485
IPI:IPI01017508 Ensembl:ENSBTAT00000026500 Uniprot:F1N1R4
Length = 951
Score = 158 (60.7 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 57/244 (23%), Positives = 112/244 (45%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL HL V ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 461 EKDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 520
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQG-EVC-NAVTV-SVVLHSDGSIAEYSV 295
+++ +RGT+V+L F E + S E C N + S +L+ + ++
Sbjct: 521 QESARRGTTVYLCEKRIDXFTELVVGNKASCETDKESCVNDLNFPSKILYEKNLV---NI 577
Query: 296 DNSIIKPTYMLTYESATXXXXXXXXXXXXXKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+ + +SA K+ A + + R+++GA+ ++ E R
Sbjct: 578 QASLTYAEAQMRIDSAAMNDNITTSLRGLNKL----AKILKKGRIEKGALTLSSPEVRFH 633
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQPQS 411
+ + E +PI +L ++ + +V E M+L ++A + F+ AL + P S
Sbjct: 634 M-DSETHDPI-DLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPS 690
Query: 412 NIDV 415
N ++
Sbjct: 691 NYEI 694
Score = 74 (31.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY D++ H
Sbjct: 757 HYGLASPIYTHFTSPIRRYADIIVH 781
>POMBASE|SPCC1322.01 [details] [associations]
symbol:rpm1 "3'-5' exonuclease for RNA 3' ss-tail"
species:4896 "Schizosaccharomyces pombe" [GO:0000965 "mitochondrial
RNA 3'-end processing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005759
"mitochondrial matrix" evidence=ISO] [GO:0008859 "exoribonuclease
II activity" evidence=ISO] [GO:0006401 "RNA catabolic process"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
PomBase:SPCC1322.01 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005759 GO:GO:0003723 eggNOG:COG0557 GO:GO:0008859
GO:GO:0000965 RefSeq:NP_588129.2 ProteinModelPortal:Q1MTN7
STRING:Q1MTN7 EnsemblFungi:SPCC1322.01.1 GeneID:2538798
KEGG:spo:SPCC1322.01 OrthoDB:EOG4NKG3S NextBio:20799980
Uniprot:Q1MTN7
Length = 957
Score = 120 (47.3 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 40/123 (32%), Positives = 57/123 (46%)
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV---SAFAH 420
P I+L V + A ++SE MIL G + + + L +RGQP +D AF
Sbjct: 717 PTISLNVSEGYSLAESVISECMILAGRVSSLFFQEHKLPGIFRGQPYPIMDGVRRKAFET 776
Query: 421 LPE-----GPVRSSAIVKIMRAAAIDF--RKPVRHGVLGLP-GYVQFTSPIRRYMDLLAH 472
L G V + + +M PV H LGL GY+Q TSP+RR+ D H
Sbjct: 777 LLSNRSSWGLVETKYSLSVMPLFESSHLASTPVSHFSLGLKDGYIQSTSPLRRFTDFFTH 836
Query: 473 YQV 475
+Q+
Sbjct: 837 HQI 839
Score = 110 (43.8 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 36/140 (25%), Positives = 57/140 (40%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPT 228
K + N L+ + ++ R DL HLK +A D S L ++IHVA+PT
Sbjct: 489 KFVKNELKDSLES--QRVDLRHLKAFAFDSSSTKEIDDAISVEELGMSNSWLHIHVANPT 546
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLHSD 287
++ S A + +++ P M P + + SL A+T S + +
Sbjct: 547 STVDIRSPLGTFAERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFSAKISKN 606
Query: 288 GSIAEYSVDNSIIKPTYMLT 307
G I +Y V S I T
Sbjct: 607 GDILDYKVRPSFISSVIKYT 626
>UNIPROTKB|E2QZ40 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
Ensembl:ENSCAFT00000017770 Uniprot:E2QZ40
Length = 870
Score = 145 (56.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 42/129 (32%), Positives = 61/129 (47%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID S L DG +V +H+AD + ++ GS DK A +R
Sbjct: 369 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAER 428
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+L PM P L E SL + + +T SV+ L +G I +II+
Sbjct: 429 ATSVYLVQKVVPMLPRLLCEELCSLHP--MSDKLTFSVIWTLTPEGKILGEWFGRTIIRS 486
Query: 303 TYMLTYESA 311
L+YE A
Sbjct: 487 CTKLSYEHA 495
Score = 82 (33.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D+L H
Sbjct: 685 RHYALNVPLYTHFTSPIRRFADVLVH 710
>UNIPROTKB|F6XKS7 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
CTD:129563 OMA:VQKRVYC EMBL:AAEX03014445 Ensembl:ENSCAFT00000017770
EMBL:AAEX03014441 EMBL:AAEX03014442 EMBL:AAEX03014443
EMBL:AAEX03014444 RefSeq:XP_852722.1 ProteinModelPortal:F6XKS7
GeneID:610194 KEGG:cfa:610194 Uniprot:F6XKS7
Length = 879
Score = 145 (56.1 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 42/129 (32%), Positives = 61/129 (47%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID S L DG +V +H+AD + ++ GS DK A +R
Sbjct: 369 RRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFEVGVHIADVSYFVPEGSPLDKVAAER 428
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+L PM P L E SL + + +T SV+ L +G I +II+
Sbjct: 429 ATSVYLVQKVVPMLPRLLCEELCSLHP--MSDKLTFSVIWTLTPEGKILGEWFGRTIIRS 486
Query: 303 TYMLTYESA 311
L+YE A
Sbjct: 487 CTKLSYEHA 495
Score = 82 (33.9 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D+L H
Sbjct: 685 RHYALNVPLYTHFTSPIRRFADVLVH 710
>UNIPROTKB|E1B7R0 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 OMA:VQKRVYC
EMBL:DAAA02006206 EMBL:DAAA02006207 EMBL:DAAA02006208
IPI:IPI00693579 RefSeq:NP_001179435.1 UniGene:Bt.54653
ProteinModelPortal:E1B7R0 Ensembl:ENSBTAT00000038112 GeneID:519222
KEGG:bta:519222 NextBio:20872834 Uniprot:E1B7R0
Length = 882
Score = 145 (56.1 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 42/129 (32%), Positives = 60/129 (46%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID S L DG +V +H+AD + ++ GS DK A +R
Sbjct: 371 RRDLRKDCIFTIDPSTARDLDDALSCKSLADGNFEVGVHIADVSYFVPEGSSLDKVAAER 430
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+L PM P L E SL + + +T SV+ L G I +II+
Sbjct: 431 ATSVYLVQKVVPMLPRLLCEELCSLNP--MTDKLTFSVIWTLTPKGKILAEWFGRTIIRS 488
Query: 303 TYMLTYESA 311
L+YE A
Sbjct: 489 CTKLSYEHA 497
Score = 82 (33.9 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D+L H
Sbjct: 687 RHYALNVPLYTHFTSPIRRFADVLVH 712
>UNIPROTKB|F1PK78 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AAEX03016225
Ensembl:ENSCAFT00000027369 Uniprot:F1PK78
Length = 1024
Score = 152 (58.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 55/197 (27%), Positives = 90/197 (45%)
Query: 122 SDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDN 181
S R LL + DG W + + A+C ++ + + V + + N + + +
Sbjct: 376 SRRGLLPTVR--DGGNEWD-FHKAAAACDVRTECLILVQ--MCEMPVNTPGNPWKVSPEE 430
Query: 182 LLNRKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
RKDL THL V++ID S L +G +++ +H+AD T ++ P S D
Sbjct: 431 ERERKDLRETHL-VFSIDPKGCEDVDDTLSVRTLANGSLELGVHIADVTHFVPPSSYIDT 489
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN-- 297
+A R T+ +L Y M P L+ + SL G + VSV+ D + Y + N
Sbjct: 490 EARTRATTYYLADRRYDMLPSILSADLCSLLGG--VDRYAVSVIWELDRT--SYEIKNVW 545
Query: 298 ---SIIKPTYMLTYESA 311
+II+ Y L YE+A
Sbjct: 546 FGRTIIRSAYKLFYEAA 562
Score = 71 (30.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 451 LGLPGYVQFTSPIRRYMDLLAH 472
L L Y FTSPIRRY D++ H
Sbjct: 757 LALDKYTHFTSPIRRYSDIVVH 778
>UNIPROTKB|E1C372 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0051306 "mitotic sister chromatid
separation" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:VQKRVYC EMBL:AADN02020657
EMBL:AADN02020658 EMBL:AADN02020659 EMBL:AADN02020660
EMBL:AADN02020661 EMBL:AADN02020662 EMBL:AADN02020663
IPI:IPI00578279 Ensembl:ENSGALT00000012599 Uniprot:E1C372
Length = 875
Score = 137 (53.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 67/260 (25%), Positives = 108/260 (41%)
Query: 182 LLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+DL ++ ID S +L DG +V +H+AD + ++ + D+ A
Sbjct: 371 MAKRRDLRKECIFTIDPSTAKDLDDALSCKQLPDGNFEVGVHIADVSYFVLEETALDRVA 430
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
+R TSV+L PM P+ L E SL +V + +G I + ++I
Sbjct: 431 SERATSVYLVQKVIPMLPKLLCEELCSLNPMRDRLTFSVMWKVTPEGKILDEWFGRTVIC 490
Query: 302 PTYMLTYESATXXXXXXXXXXXXXKI--LS--------EAAALRLQW---RLQ-QGAIDT 347
L+Y+ A ++ +S + A L L L+ Q ID
Sbjct: 491 SCAKLSYDHAQSMIENPGKVFSPEELPPISPQHSVAEIQQAVLNLHHIARHLRKQRFIDG 550
Query: 348 ATLETRIKVANPEDPEPII--NLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLAL 403
A ++K++ D E + Y+ D + +LV E M+L A+A Y SF AL
Sbjct: 551 ALRLDQLKLSFTLDQESGMPQGCYIYQYRD-SNKLVEEFMLLANMAVAHQIYRSFPEQAL 609
Query: 404 PYRGQP-QSNI--DVSAFAH 420
R P QS + D+ F H
Sbjct: 610 LRRHPPPQSKLLNDLMEFCH 629
Score = 85 (35.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDE-VEVKVEEAHPR 503
RH L +P Y FTSPIRRY D++ H L A+ +S ++ E ++ + E + R
Sbjct: 690 RHYALNVPFYTHFTSPIRRYADVVVHRL--LSASLGISSPIKMEKEAIQRQAEHCNDR 745
>UNIPROTKB|P21499 [details] [associations]
symbol:rnr species:83333 "Escherichia coli K-12"
[GO:0004540 "ribonuclease activity" evidence=IMP] [GO:0016896
"exoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IDA] [GO:0008997 "ribonuclease R activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0034458 "3'-5' RNA helicase
activity" evidence=IDA] [GO:0034470 "ncRNA processing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0006402 "mRNA catabolic process" evidence=IMP] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA;IEP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009405 "pathogenesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IDA] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 GO:GO:0009405
GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0016556 GO:GO:0003723 EMBL:U14003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0000154 GO:GO:0008859 EMBL:J04199
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 PIR:S56404
RefSeq:NP_418600.4 RefSeq:YP_492321.1 ProteinModelPortal:P21499
SMR:P21499 DIP:DIP-10733N IntAct:P21499 PRIDE:P21499
EnsemblBacteria:EBESCT00000001517 EnsemblBacteria:EBESCT00000016566
GeneID:12932898 GeneID:948692 KEGG:ecj:Y75_p4065 KEGG:eco:b4179
PATRIC:32123931 EchoBASE:EB1239 EcoGene:EG11259
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD ProtClustDB:PRK11642
BioCyc:EcoCyc:EG11259-MONOMER BioCyc:ECOL316407:JW5741-MONOMER
BioCyc:MetaCyc:EG11259-MONOMER Genevestigator:P21499 GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 Uniprot:P21499
Length = 813
Score = 130 (50.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 44/193 (22%), Positives = 84/193 (43%)
Query: 125 VLLAVAQRPD------GKKNWMVYDQNGASCSIKPQQVTFVVPGV-EKFDHKDISNFLQK 177
V++ + QRP GK ++ D G ++ T +P + + + ++ ++
Sbjct: 192 VVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEE 251
Query: 178 A-EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSL 236
E+ R DL L + ID + + G ++++ +AD + Y+ P +
Sbjct: 252 VPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPSTP 311
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV-SVVLHSDGSIAEYSV 295
D++A RGTSV+ P+ PM PE L+ G+ +V V + + S G + Y
Sbjct: 312 LDREARNRGTSVYFPSQVIPMLPEVLS-NGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKF 370
Query: 296 DNSIIKPTYMLTY 308
+++ LTY
Sbjct: 371 YEAVMSSHARLTY 383
Score = 93 (37.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 369 YVEDQADPAMRLVSEMMILCGEAIATYGSFN---NLALP--YRGQPQSNIDV-SAFAHLP 422
+VE +PA+ + + EAI ++ S L LP + +P+ ++ + A P
Sbjct: 473 FVEKAKEPALFRIHDKPST--EAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRP 530
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + + +++ M+ A D G L L Y FTSPIRRY DL H
Sbjct: 531 DAEMLQTMLLRSMKQAIYDPENRGHFG-LALQSYAHFTSPIRRYPDLTLH 579
Score = 39 (18.8 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 488 QIGDEVEVKVE 498
++GD VEV+VE
Sbjct: 701 RLGDRVEVRVE 711
>POMBASE|SPAC2C4.07c [details] [associations]
symbol:SPAC2C4.07c "ribonuclease II (RNB) family
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006401 "RNA catabolic process" evidence=ISM]
[GO:0033554 "cellular response to stress" evidence=IEP]
InterPro:IPR001900 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
PomBase:SPAC2C4.07c GO:GO:0005829 EMBL:CU329670 GO:GO:0033554
GO:GO:0003723 GO:GO:0006401 GO:GO:0004527 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 EMBL:AB027825
PIR:T38518 RefSeq:NP_594510.1 ProteinModelPortal:O14040
STRING:O14040 EnsemblFungi:SPAC2C4.07c.1 GeneID:2542643
KEGG:spo:SPAC2C4.07c OMA:WIISHEE OrthoDB:EOG4MGWGN NextBio:20803692
Uniprot:O14040
Length = 927
Score = 154 (59.3 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 64/262 (24%), Positives = 106/262 (40%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ + + R+DL + + ID S L +G +V +H+AD T +++P S
Sbjct: 434 SHEEIKKRRDLRNELIITIDPETARDLDDAVSCRALDNGTYEVGVHIADVTHFVKPDSAL 493
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS-IAEYSVD 296
DK+A R T+V+L PM P L SL A +V L S+G I +
Sbjct: 494 DKEAASRATTVYLVQKAIPMLPPLLCERLCSLNPNVERLAFSVFWKLDSNGKEIGKRWFG 553
Query: 297 NSIIKPTYMLTYESATXXXXXXXXXXXXXKILS--------EAAALRL--------QWRL 340
++IK L Y A K + E + L L + R
Sbjct: 554 KTVIKTCARLAYSEAQGVIEGKSWDDAVGKPIGGTHTPKDVETSILTLCEISRKLRKDRF 613
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS--F 398
+GA++ + E + ++ P +Y +Q D A L+ E M+L ++A + S F
Sbjct: 614 AKGAVEINSTELKFQLDEYGMPNKC-EVY--EQTD-ANHLIEEFMLLANRSVAEHISKNF 669
Query: 399 NNLALPYRGQPQSNIDVSAFAH 420
+N +L R ++ F H
Sbjct: 670 SNNSLLRRHASPKEKQINEFCH 691
Score = 71 (30.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++ H
Sbjct: 754 HYALSFNHYTHFTSPIRRYPDIIVH 778
Score = 37 (18.1 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 160 VPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLK 192
+PG+ + I + +Q+ D L +D H K
Sbjct: 52 IPGLGSGLLERIKDIVQRPTDTQLKGQDSNHKK 84
>FB|FBgn0039183 [details] [associations]
symbol:Dis3 "Dis3" species:7227 "Drosophila melanogaster"
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0071027 "nuclear RNA
surveillance" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0022008 GO:GO:0003723 GO:GO:0004540 GO:GO:0010468
GO:GO:0005652 GO:GO:0000176 InterPro:IPR022966 PROSITE:PS01175
SMART:SM00670 GO:GO:0071027 FlyBase:FBgn0039183 EMBL:AJ276897
ProteinModelPortal:Q9BI20 STRING:Q9BI20 PRIDE:Q9BI20
InParanoid:Q9BI20 ArrayExpress:Q9BI20 Bgee:Q9BI20 Uniprot:Q9BI20
Length = 983
Score = 144 (55.7 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 64/263 (24%), Positives = 110/263 (41%)
Query: 165 KFDHKDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIK 219
KF + +S FL K +++ R DL L + ++D L +G ++
Sbjct: 450 KFSDEVLS-FLPKMPWTITDEDYSKRVDLRDLYICSVDPPGCTDIDDALHCRELPNGNLE 508
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRG-TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
V +H+AD + +I PG + G T+V+L M PE L+ SL G A
Sbjct: 509 VGVHIADVSHFIRPGKRTGHGGSGPGETTVYLVGKRIDMVPELLSSNLCSLVGGVERFAF 568
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATXXXXXXXXXXXXXKIL---SEAAALR 335
+ + ++ ++ S+IK +TYE A K L + A +
Sbjct: 569 SCVWEVDNEANVLSKRFHKSVIKSKRAMTYEEAQNIIDDATQQNEIAKSLRNLNRLAKIL 628
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+ R+ GA+ A+ E R +V + E EP+ + V+ + +V E M+L +A +
Sbjct: 629 KKRRMDNGALVLASPEIRFQV-DSETHEPL-EVEVKQMRE-TNSMVEEFMLLANITVAEH 685
Query: 396 --GSFNNLALPYRGQ--PQSNID 414
F+ A+ R P +N D
Sbjct: 686 IATEFSECAVLRRHPRPPPTNFD 708
Score = 76 (31.8 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGD 491
H L P Y FTSPIRRY D++ H + A S AQ+ D
Sbjct: 774 HYGLAAPIYTHFTSPIRRYSDIMVHRLLAASIGA-DSTYAQLLD 816
Score = 43 (20.2 bits), Expect = 2.9e-09, Sum P(3) = 2.9e-09
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 77 MQELV-AIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRV----LLAVAQ 131
M+EL+ +R+ + + S LE + + +KG+L++ ++ +R L+AV
Sbjct: 238 MKELLEGLRQNKLLQGTFQASRENYLEGTVNVEKFEKGILIQGRESLNRAVDGDLVAVEL 297
Query: 132 RPDGK 136
P+ +
Sbjct: 298 LPEAE 302
>UNIPROTKB|F1NKN5 [details] [associations]
symbol:LOC100857630 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AADN02038918 EMBL:AADN02038919
EMBL:AADN02038920 IPI:IPI00571818 Ensembl:ENSGALT00000012364
Uniprot:F1NKN5
Length = 1082
Score = 147 (56.8 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 42/134 (31%), Positives = 64/134 (47%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E LN +D THL +++ID S L +G +++ +H+AD T ++ S +D
Sbjct: 487 EKKRLNLRD-THL-IFSIDPKGCEDVDDALSVRTLPNGNLELGVHIADVTYFVAANSYTD 544
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDN 297
+A R T+ +L Y M P L+ + SL G AV+V L + I +
Sbjct: 545 IEARARATTYYLADRRYDMLPSVLSADICSLLSGVDRYAVSVLWELERESYEILRVCYNK 604
Query: 298 SIIKPTYMLTYESA 311
SII+ Y L YE A
Sbjct: 605 SIIRSAYKLVYEVA 618
Score = 74 (31.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 809 HYGLALDKYTHFTSPIRRYADIIVH 833
>MGI|MGI:2143272 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:10090 "Mus musculus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 MGI:MGI:2143272 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
OrthoDB:EOG4229HZ InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
EMBL:AK173310 EMBL:AK029974 EMBL:BC056939 IPI:IPI00223964
IPI:IPI00881768 RefSeq:NP_001001295.2 RefSeq:NP_001171255.1
RefSeq:NP_766107.1 UniGene:Mm.268341 ProteinModelPortal:Q8C0S1
SMR:Q8C0S1 STRING:Q8C0S1 PhosphoSite:Q8C0S1 PaxDb:Q8C0S1
PRIDE:Q8C0S1 Ensembl:ENSMUST00000068367 Ensembl:ENSMUST00000113890
Ensembl:ENSMUST00000120760 Ensembl:ENSMUST00000168844 GeneID:213550
KEGG:mmu:213550 UCSC:uc009qbu.2 UCSC:uc009qbw.2
GeneTree:ENSGT00530000063106 InParanoid:Q8C0S1 NextBio:374039
Bgee:Q8C0S1 CleanEx:MM_DIS3L Genevestigator:Q8C0S1 Uniprot:Q8C0S1
Length = 1053
Score = 146 (56.5 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 43/130 (33%), Positives = 63/130 (48%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL THL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RKDLRTTHL-VFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV+V L I + +II+
Sbjct: 524 TRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIR 583
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 584 SAYKLFYEAA 593
Score = 73 (30.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 784 HYGLALDKYTHFTSPIRRYSDIVVH 808
>CGD|CAL0003016 [details] [associations]
symbol:SSD1 species:5476 "Candida albicans" [GO:0020012
"evasion or tolerance of host immune response" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005935 "cellular bud neck"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0032153 "cell division site" evidence=IEA]
[GO:0060237 "regulation of fungal-type cell wall organization"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IEA] [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0003016
GO:GO:0009405 GO:GO:0003723 GO:GO:0004540 EMBL:AACQ01000012
GO:GO:0020012 RefSeq:XP_721868.1 ProteinModelPortal:Q5AK62
STRING:Q5AK62 GeneID:3636520 KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 142 (55.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 34/102 (33%), Positives = 61/102 (59%)
Query: 212 RLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQ 271
R+ + +I++ HVAD +I+PGS D+ + KR +SVFLP T +FP+++ + +S ++
Sbjct: 697 RISNTKIELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVNLFPKQVN-KIVSFKE 755
Query: 272 GEVCNAVTVSVVLHSDGS---IAEYSVDNSIIKPTYMLTYES 310
E + VSVV D S + + + S+I P ++TY++
Sbjct: 756 NE--KNLAVSVVFEIDTSNFEVEDLYIHESVIVPKQLVTYDA 795
Score = 79 (32.9 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
H LP Y FT+P+RRY DL+ H Q+
Sbjct: 969 HYYFNLPLYTHFTAPLRRYADLIVHRQL 996
>UNIPROTKB|Q5AK62 [details] [associations]
symbol:SSD1 "Putative uncharacterized protein SSD1"
species:237561 "Candida albicans SC5314" [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0020012 "evasion or tolerance of host immune
response" evidence=IMP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 CGD:CAL0003016 GO:GO:0009405 GO:GO:0003723
GO:GO:0004540 EMBL:AACQ01000012 GO:GO:0020012 RefSeq:XP_721868.1
ProteinModelPortal:Q5AK62 STRING:Q5AK62 GeneID:3636520
KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 142 (55.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 34/102 (33%), Positives = 61/102 (59%)
Query: 212 RLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQ 271
R+ + +I++ HVAD +I+PGS D+ + KR +SVFLP T +FP+++ + +S ++
Sbjct: 697 RISNTKIELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVNLFPKQVN-KIVSFKE 755
Query: 272 GEVCNAVTVSVVLHSDGS---IAEYSVDNSIIKPTYMLTYES 310
E + VSVV D S + + + S+I P ++TY++
Sbjct: 756 NE--KNLAVSVVFEIDTSNFEVEDLYIHESVIVPKQLVTYDA 795
Score = 79 (32.9 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
H LP Y FT+P+RRY DL+ H Q+
Sbjct: 969 HYYFNLPLYTHFTAPLRRYADLIVHRQL 996
>UNIPROTKB|F1SJJ9 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:CU062652 Ensembl:ENSSSCT00000005453 Uniprot:F1SJJ9
Length = 1057
Score = 144 (55.7 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 43/130 (33%), Positives = 62/130 (47%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL THL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 468 RKDLRKTHL-VFSIDPRGCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEAR 526
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV+V L I +II+
Sbjct: 527 SRATTYYLADRRYDMLPSILSADVCSLLGGVDRYAVSVMWELDKTSHEIKNVWYGRTIIR 586
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 587 SAYKLFYEAA 596
Score = 74 (31.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 787 HYGLALDKYTHFTSPIRRYSDIIVH 811
>UNIPROTKB|I3LEH1 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CU062652
Ensembl:ENSSSCT00000024119 Uniprot:I3LEH1
Length = 1059
Score = 144 (55.7 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 43/130 (33%), Positives = 62/130 (47%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL THL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 470 RKDLRKTHL-VFSIDPRGCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEAR 528
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV+V L I +II+
Sbjct: 529 SRATTYYLADRRYDMLPSILSADVCSLLGGVDRYAVSVMWELDKTSHEIKNVWYGRTIIR 588
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 589 SAYKLFYEAA 598
Score = 74 (31.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 789 HYGLALDKYTHFTSPIRRYSDIIVH 813
>UNIPROTKB|Q9KNY1 [details] [associations]
symbol:rnr "Ribonuclease R" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 136 (52.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 57/224 (25%), Positives = 94/224 (41%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R DL L + ID + G ++++ +AD + Y+ P + D
Sbjct: 261 EEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALD 320
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD-GSIAEY---- 293
K+A+ RG SV+ P+ PM PE L+ G+ +V V + S+ G ++ Y
Sbjct: 321 KEAINRGNSVYFPSQVVPMLPEVLS-NGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYE 379
Query: 294 SVDNSIIKPTYMLTYESATXXXXXXXXXXXXXKILSEAAALRL---QWRLQQGAIDTATL 350
+V NS + TY +E L E + R ++GAI+ T+
Sbjct: 380 AVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETV 439
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
ET+ + N + I V + A +L+ E MIL A A+
Sbjct: 440 ETKF-IFNAQRKIESIEPVVRNDAH---KLIEECMILANIASAS 479
Score = 79 (32.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ + + +++ M+ A + G L L Y FTSPIRRY DLL H
Sbjct: 537 PDKELIQTMLLRSMKQAVYNADNAGHFG-LALKRYAHFTSPIRRYPDLLLH 586
>TIGR_CMR|VC_2599 [details] [associations]
symbol:VC_2599 "ribonuclease R" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 136 (52.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 57/224 (25%), Positives = 94/224 (41%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R DL L + ID + G ++++ +AD + Y+ P + D
Sbjct: 261 EEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSYYVRPDTALD 320
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD-GSIAEY---- 293
K+A+ RG SV+ P+ PM PE L+ G+ +V V + S+ G ++ Y
Sbjct: 321 KEAINRGNSVYFPSQVVPMLPEVLS-NGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYE 379
Query: 294 SVDNSIIKPTYMLTYESATXXXXXXXXXXXXXKILSEAAALRL---QWRLQQGAIDTATL 350
+V NS + TY +E L E + R ++GAI+ T+
Sbjct: 380 AVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETV 439
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
ET+ + N + I V + A +L+ E MIL A A+
Sbjct: 440 ETKF-IFNAQRKIESIEPVVRNDAH---KLIEECMILANIASAS 479
Score = 79 (32.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ + + +++ M+ A + G L L Y FTSPIRRY DLL H
Sbjct: 537 PDKELIQTMLLRSMKQAVYNADNAGHFG-LALKRYAHFTSPIRRYPDLLLH 586
>RGD|1308959 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S. cerevisiae)-like"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO;ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0019899 "enzyme binding" evidence=IEA;ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 RGD:1308959
GO:GO:0005886 GO:GO:0005813 GO:GO:0003723 GO:GO:0016075
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 OrthoDB:EOG4229HZ
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BC085932 IPI:IPI00366657 RefSeq:NP_001008381.1
UniGene:Rn.24884 ProteinModelPortal:Q5U2P0 STRING:Q5U2P0
PRIDE:Q5U2P0 Ensembl:ENSRNOT00000014071 GeneID:363077
KEGG:rno:363077 UCSC:RGD:1308959 InParanoid:Q5U2P0 NextBio:682358
Genevestigator:Q5U2P0 Uniprot:Q5U2P0
Length = 1054
Score = 143 (55.4 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 42/130 (32%), Positives = 63/130 (48%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+DL THL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RRDLRSTHL-VFSIDPKGCEDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV+V L I + +II+
Sbjct: 524 TRATTYYLADRRYDMLPSILSADLCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIR 583
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 584 SAYKLFYEAA 593
Score = 73 (30.8 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 784 HYGLALDKYTHFTSPIRRYSDIVVH 808
>UNIPROTKB|Q0P4R5 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InterPro:IPR022966 PROSITE:PS01175 EMBL:BC121935
RefSeq:NP_001072835.1 UniGene:Str.52789 ProteinModelPortal:Q0P4R5
STRING:Q0P4R5 GeneID:780296 KEGG:xtr:780296 Xenbase:XB-GENE-1013178
Uniprot:Q0P4R5
Length = 1039
Score = 144 (55.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 42/133 (31%), Positives = 66/133 (49%)
Query: 184 NRKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+R DL THL V++ID S +L G +++ +H+AD T ++ P + +D +A
Sbjct: 457 DRLDLRKTHL-VFSIDPKGCEDVDDALSIRKLPSGHLELGVHIADVTHFVPPNTYTDIEA 515
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS---VDNS 298
R T+ +L Y M P L+ + SL G + VSV+ D S E +
Sbjct: 516 RSRATTYYLADRRYDMLPLILSADLCSLLGG--VDRYAVSVIWEMDSSTYEIRRVWYGRT 573
Query: 299 IIKPTYMLTYESA 311
II+ +Y L+YE A
Sbjct: 574 IIRSSYKLSYEVA 586
Score = 73 (30.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 775 HYGLALEKYTHFTSPIRRYADIVVH 799
Score = 41 (19.5 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 326 KILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMM 385
K+ A A R++ R GA++ +E R+++ + + V Q ++E M
Sbjct: 622 KLTEVAHATRMR-RDMSGALELEGVEVRVQLGEKHSIDDL----VPKQPLQMHETIAECM 676
Query: 386 ILCGEAIA 393
IL +A
Sbjct: 677 ILANHWVA 684
Score = 41 (19.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 490 GDEVEVKVEEAHPRDDII 507
G EV V++ E H DD++
Sbjct: 644 GVEVRVQLGEKHSIDDLV 661
>UNIPROTKB|A0JN80 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0000175
GO:GO:0000177 EMBL:BC126555 IPI:IPI00701147 RefSeq:NP_001071624.1
UniGene:Bt.10856 ProteinModelPortal:A0JN80 STRING:A0JN80
PRIDE:A0JN80 GeneID:777771 KEGG:bta:777771 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InParanoid:A0JN80 OrthoDB:EOG4229HZ NextBio:20924325
InterPro:IPR022966 PROSITE:PS01175 Uniprot:A0JN80
Length = 1053
Score = 140 (54.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 42/130 (32%), Positives = 63/130 (48%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+DL THL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 REDLRKTHL-VFSIDPSGCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV+V L I + +II+
Sbjct: 524 TRATTYYLADRRYDMLPAILSADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIR 583
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 584 SAYKLFYEAA 593
Score = 74 (31.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 784 HYGLALDKYTHFTSPIRRYSDIIVH 808
>UNIPROTKB|F1MEA6 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
IPI:IPI00701147 InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:DAAA02027893
Ensembl:ENSBTAT00000000481 Uniprot:F1MEA6
Length = 1053
Score = 140 (54.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 42/130 (32%), Positives = 63/130 (48%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+DL THL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 REDLRKTHL-VFSIDPSGCEDVDDTLSVRALDNGNLELGVHIADVTHFVAPHSYIDIEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV+V L I + +II+
Sbjct: 524 TRATTYYLADRRYDMLPAILSADVCSLLGGVDRYAVSVMWELDKTSYEIKKVWYGRTIIR 583
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 584 SAYKLFYEAA 593
Score = 74 (31.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 784 HYGLALDKYTHFTSPIRRYSDIIVH 808
>UNIPROTKB|Q8TF46 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP;IDA] [GO:0016075
"rRNA catabolic process" evidence=IMP;IDA] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005886
GO:GO:0005813 GO:GO:0003723 GO:GO:0016075 EMBL:CH471082
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 EMBL:AB075835 EMBL:AK095407 EMBL:AC055855
EMBL:BC014124 EMBL:BC022089 IPI:IPI00291003 IPI:IPI00295876
IPI:IPI00879677 IPI:IPI00879828 RefSeq:NP_001137160.1
RefSeq:NP_588616.1 UniGene:Hs.446251 ProteinModelPortal:Q8TF46
SMR:Q8TF46 IntAct:Q8TF46 STRING:Q8TF46 PhosphoSite:Q8TF46
DMDM:166201903 PaxDb:Q8TF46 PeptideAtlas:Q8TF46 PRIDE:Q8TF46
DNASU:115752 Ensembl:ENST00000319194 Ensembl:ENST00000319212
GeneID:115752 KEGG:hsa:115752 UCSC:uc002app.3 UCSC:uc002apq.2
GeneCards:GC15P066585 HGNC:HGNC:28698 HPA:HPA041805 MIM:614183
neXtProt:NX_Q8TF46 PharmGKB:PA162383675 InParanoid:Q8TF46
OMA:IPRFGIK ChiTaRS:DIS3L GenomeRNAi:115752 NextBio:79674
ArrayExpress:Q8TF46 Bgee:Q8TF46 CleanEx:HS_DIS3L
Genevestigator:Q8TF46 Uniprot:Q8TF46
Length = 1054
Score = 140 (54.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 41/130 (31%), Positives = 63/130 (48%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL +HL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RKDLRKSHL-VFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV++ L I + +II+
Sbjct: 524 TRATTYYLADRRYDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIR 583
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 584 SAYKLFYEAA 593
Score = 73 (30.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 784 HYGLALDKYTHFTSPIRRYSDIVVH 808
>UNIPROTKB|Q5R5N8 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9601 "Pongo
abelii" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0000175 GO:GO:0000177 CTD:115752 HOGENOM:HOG000191945
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:CR860819
RefSeq:NP_001126723.1 UniGene:Pab.8044 ProteinModelPortal:Q5R5N8
GeneID:100173724 KEGG:pon:100173724 Uniprot:Q5R5N8
Length = 1054
Score = 140 (54.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 41/130 (31%), Positives = 63/130 (48%)
Query: 185 RKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL +HL V++ID S L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RKDLRKSHL-VFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG-SIAEYSVDNSIIK 301
R T+ +L Y M P L+ + SL G AV++ L I + +II+
Sbjct: 524 TRATTYYLADRRYDMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIR 583
Query: 302 PTYMLTYESA 311
Y L YE+A
Sbjct: 584 SAYKLFYEAA 593
Score = 73 (30.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 784 HYGLALDKYTHFTSPIRRYSDIVVH 808
>TAIR|locus:2203231 [details] [associations]
symbol:AT1G77680 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004540
"ribonuclease activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 OMA:HIYEYRE
EMBL:AK229034 IPI:IPI00531584 RefSeq:NP_177891.1 UniGene:At.22476
ProteinModelPortal:Q0WPN0 STRING:Q0WPN0 PaxDb:Q0WPN0 PRIDE:Q0WPN0
EnsemblPlants:AT1G77680.1 GeneID:844104 KEGG:ath:AT1G77680
TAIR:At1g77680 HOGENOM:HOG000030596 InParanoid:Q0WPN0
PhylomeDB:Q0WPN0 ProtClustDB:CLSN2682125 Genevestigator:Q0WPN0
Uniprot:Q0WPN0
Length = 1055
Score = 137 (53.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 38/133 (28%), Positives = 61/133 (45%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + RKDL L V ID S L G +V +H+AD + ++ P + D
Sbjct: 470 EEEVQRRKDLRDLCVLTIDPSTATDLDDALSVQSLPGGFFRVGVHIADVSYFVLPETALD 529
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A R TSV+L M P L+ SL G A ++ L+ +G + + + +
Sbjct: 530 TEARFRSTSVYLMQRKISMLPPLLSENVGSLSPGADRLAFSILWDLNREGDVIDRWIGRT 589
Query: 299 IIKPTYMLTYESA 311
II+ L+Y+ A
Sbjct: 590 IIRSCCKLSYDHA 602
Score = 76 (31.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L +P Y FTSP+RRY D++ H
Sbjct: 792 HYALAVPLYTHFTSPLRRYPDIVVH 816
>ZFIN|ZDB-GENE-070209-95 [details] [associations]
symbol:dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070209-95 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CABZ01003662 IPI:IPI00493157
ProteinModelPortal:F1Q9I9 Ensembl:ENSDART00000075176 Bgee:F1Q9I9
Uniprot:F1Q9I9
Length = 1057
Score = 138 (53.6 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 45/143 (31%), Positives = 73/143 (51%)
Query: 176 QKAEDNLLNRKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDG--RIKVYIHVADPTKYI 231
Q + + +R+DL +HL V++ID S +R Q G R+++ +H+AD T ++
Sbjct: 450 QMDSNEVSSRRDLRDSHL-VFSIDPKGCEDVDDTLS-VRTQPGGKRLELGVHIADVTHFV 507
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
GSL+D +A R T+ +L Y M P L+ + SL G + +SV+ D
Sbjct: 508 REGSLTDLEARSRATTYYLADRRYDMLPAVLSADLCSLLGG--VDRYAMSVLWELDAETL 565
Query: 292 EY-SV--DNSIIKPTYMLTYESA 311
E SV ++I+ +Y L YE A
Sbjct: 566 EVCSVWFGRTLIRSSYQLHYELA 588
Score = 73 (30.8 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 776 HYGLALARYTHFTSPIRRYADVIVH 800
>UNIPROTKB|P30850 [details] [associations]
symbol:rnb "ribonuclease II" species:83333 "Escherichia
coli K-12" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IGI] [GO:0016078
"tRNA catabolic process" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] HAMAP:MF_01036
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011804 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016078 GO:GO:0008408 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1
GO:GO:0008859 EMBL:X67913 PIR:A64877 RefSeq:NP_415802.1
RefSeq:YP_489554.1 PDB:2ID0 PDB:2IX0 PDB:2IX1 PDBsum:2ID0
PDBsum:2IX0 PDBsum:2IX1 ProteinModelPortal:P30850 SMR:P30850
DIP:DIP-10724N IntAct:P30850 MINT:MINT-1248196 PaxDb:P30850
PRIDE:P30850 EnsemblBacteria:EBESCT00000004108
EnsemblBacteria:EBESCT00000004109 EnsemblBacteria:EBESCT00000015364
GeneID:12934347 GeneID:945864 KEGG:ecj:Y75_p1261 KEGG:eco:b1286
PATRIC:32117840 EchoBASE:EB1577 EcoGene:EG11620 eggNOG:COG4776
HOGENOM:HOG000271427 KO:K01147 OMA:ERDIADW ProtClustDB:PRK05054
BioCyc:EcoCyc:EG11620-MONOMER BioCyc:ECOL316407:JW1279-MONOMER
BioCyc:MetaCyc:EG11620-MONOMER EvolutionaryTrace:P30850
Genevestigator:P30850 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 Uniprot:P30850
Length = 644
Score = 157 (60.3 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 102/432 (23%), Positives = 182/432 (42%)
Query: 100 LLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMV----YDQNGASCSIKPQ 154
LL+D + + +GL EFK + D + + + P G +++ Y G + P
Sbjct: 105 LLKDAIPCRAA-RGLNHEFK-EGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFV-PW 161
Query: 155 QVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQ 214
VT +EK ++ + ++ L+ R+DLT L ID A L
Sbjct: 162 WVTLARHNLEKEAPDGVAT--EMLDEGLV-REDLTALDFVTIDSASTEDMDDALFAKALP 218
Query: 215 DGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEV 274
D ++++ + +ADPT +I GS DK A R + +LP PM P +L+ + SLR EV
Sbjct: 219 DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEV 278
Query: 275 CNAVTVSVVLHSDGSIAEYSVD--NSIIKPTYMLTYESATXXXXXXXXXXXXXKILSEAA 332
+ + L +DG+I E +++ + I+ L Y+ + + ++E
Sbjct: 279 RPVLACRMTLSADGTI-EDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQV 337
Query: 333 AL-------RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMM 385
L R +WR + + R + E E ++++ E + A R+V E M
Sbjct: 338 RLLAQICQRRGEWRHNHALVFKDRPDYRFILG--EKGE-VLDIVAEPRRI-ANRIVEEAM 393
Query: 386 I---LCGEAIAT----YGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI-VKIMRA 437
I +C + +G +N + G +N D A A L +++ + V
Sbjct: 394 IAANICAARVLRDKLGFGIYN----VHMGFDPANAD--ALAAL----LKTHGLHVDAEEV 443
Query: 438 AAIDFRKPVRHGVLGLP-GYVQFTSPIRRYMDLLA-------HYQVGLQA-AAWVSVGAQ 488
+D +R + P G++ S IRR+ H+ +GL+A A W S +
Sbjct: 444 LTLDGFCKLRRELDAQPTGFLD--SRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRK 501
Query: 489 IGDEVEVKVEEA 500
GD + ++ +A
Sbjct: 502 YGDMINHRLLKA 513
>DICTYBASE|DDB_G0268186 [details] [associations]
symbol:DDB_G0268186 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0268186 EMBL:AAFI02000003
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 RefSeq:XP_647622.1 EnsemblProtists:DDB0189843
GeneID:8616436 KEGG:ddi:DDB_G0268186 InParanoid:Q55FB1 OMA:YMILANS
Uniprot:Q55FB1
Length = 1504
Score = 116 (45.9 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+ LT+ + +ID S + I++ +H+AD + +++ GS D +A +R
Sbjct: 709 RRQLTNHHIMSIDPLGSKDIDDAISIGYPTNDIIEIGVHIADVSHFVKEGSPLDLEAKRR 768
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQG 272
GT+++LP + M P L+ + SLR G
Sbjct: 769 GTTIYLPDRRFDMLPAVLSEDVCSLRGG 796
Score = 76 (31.8 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
H L + Y FTSPIRRY D++ H Q+
Sbjct: 1041 HYGLAIDKYTHFTSPIRRYSDIIVHRQL 1068
Score = 68 (29.0 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 23/79 (29%), Positives = 42/79 (53%)
Query: 339 RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YG 396
R++ GA++ ++E R K + + +P + +++ + LV+E MIL +AT +
Sbjct: 897 RVKNGALELESIEVRFKFNSKDSSQPK-KIILKNDLE-IHHLVAEYMILANSHVATKIHS 954
Query: 397 SFNNLALPYRGQPQSN-ID 414
F + AL R P+ N ID
Sbjct: 955 VFPSSAL-LRRHPKPNQID 972
Score = 39 (18.8 bits), Expect = 6.4e-08, Sum P(4) = 6.4e-08
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 136 KKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLK-VY 194
K N ++ D N ++ + + ++ +P +E I +L+ E N + K++ L+ +Y
Sbjct: 222 KGNQLLLDYNNSNNNNEDDEIIITIPDIET-----ILEYLEVIELNDTDFKNIVILETIY 276
>WB|WBGene00001001 [details] [associations]
symbol:dis-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005737 GO:GO:0040010 GO:GO:0005730
GO:GO:0040018 GO:GO:0000003 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 GO:GO:0000178 GO:GO:0004540 GO:GO:0006364
eggNOG:COG0557 HOGENOM:HOG000191945 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 EMBL:Z70718 PIR:T18925 RefSeq:NP_501835.2
ProteinModelPortal:Q17632 SMR:Q17632 STRING:Q17632 PaxDb:Q17632
EnsemblMetazoa:C04G2.6 GeneID:177875 KEGG:cel:CELE_C04G2.6
UCSC:C04G2.6 CTD:177875 WormBase:C04G2.6 InParanoid:Q17632
NextBio:898756 Uniprot:Q17632
Length = 961
Score = 138 (53.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 54/214 (25%), Positives = 86/214 (40%)
Query: 183 LNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
L R DL L + ++D ++ + +V +H+AD T ++ PG+ D +A
Sbjct: 477 LPRVDLRDLTICSVDPLGCTDIDDALHCKQIGEDLFEVGVHIADVTHFVRPGTAIDDEAA 536
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RGT+V+L M P L+ SLR E A + + S I S+IK
Sbjct: 537 LRGTTVYLCDRRIDMLPCLLSSNLCSLRGEEERYAFSCIWTMTSSADIQSVKYHKSLIKS 596
Query: 303 TYMLTYESATXXXXX---XXXXXXXXKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
LTYE A + L + + + R GA+ A+ E R + +
Sbjct: 597 KAALTYEKAQEIIDDPKEQNDVALGLRGLMKLSKVLNARRTGNGALTLASSEVRFDM-DW 655
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA 393
E P +E Q +V E M+L ++A
Sbjct: 656 ESRTP--KKVMEKQHLDTHSMVEEFMLLANISVA 687
Score = 67 (28.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
+H L Y FTSPIRRY D++ H
Sbjct: 777 QHFGLACAIYTHFTSPIRRYADVIVH 802
>CGD|CAL0000344 [details] [associations]
symbol:orf19.3624 species:5476 "Candida albicans" [GO:0045025
"mitochondrial degradosome" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] [GO:0000957
"mitochondrial RNA catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0000344
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 EMBL:AACQ01000103
RefSeq:XP_714466.1 ProteinModelPortal:Q59Y25 GeneID:3643919
KEGG:cal:CaO19.3624 Uniprot:Q59Y25
Length = 1146
Score = 107 (42.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 179 EDNLLN-RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED L + R+D+ + +Y ID S Q I V IHVA+P+ YI+P S+
Sbjct: 633 EDPLQHLRQDMREIPIYCIDDPTAHEIDDGISIHEDQQDYI-VSIHVAEPSSYIKPNSII 691
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLA-MEGMSL 269
A ++ ++ ++P +P+ P+ ++ + G+ +
Sbjct: 692 SSLAFEKTSTSYMPDTAFPLLPKLVSDIAGLGI 724
Score = 101 (40.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 34/138 (24%), Positives = 70/138 (50%)
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QP 409
E ++K+AN + +++ + +++LV+E MI+ A + + NN+ + YR P
Sbjct: 870 ELQMKLANSNNT---VSIGFANLESASIKLVTENMIIANYLTARFATTNNIKILYRYLDP 926
Query: 410 QSNIDV-SAFAHLPE-------GPVRSSAIVKIM----RAAAIDFRKPVRHGVLGLPGYV 457
+ N ++ S + L + + + + ++ R D KP +H ++GL Y
Sbjct: 927 KFNDELLSEYQKLMKLSDTNNNTSIPTDQLTQMFPFFTRGLVTD--KPQKHLLMGLSMYS 984
Query: 458 QFTSPIRRYMDLLAHYQV 475
TSP+RRY+DL+ +++
Sbjct: 985 NITSPLRRYIDLVNQWKI 1002
>FB|FBgn0035111 [details] [associations]
symbol:CG16940 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
[GO:0008859 "exoribonuclease II activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:AE014296 GO:GO:0003723 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 GO:GO:0008859
EMBL:BT044564 RefSeq:NP_728490.1 UniGene:Dm.29548 SMR:Q8IRJ7
EnsemblMetazoa:FBtr0072486 GeneID:38034 KEGG:dme:Dmel_CG16940
UCSC:CG16940-RC FlyBase:FBgn0035111 InParanoid:Q8IRJ7 OMA:LESGHVI
OrthoDB:EOG46M912 GenomeRNAi:38034 NextBio:806667 Uniprot:Q8IRJ7
Length = 1044
Score = 123 (48.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 60/255 (23%), Positives = 110/255 (43%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKY-IEPGSL 236
++++L RKDL + ++ ID S +L D ++ +H++D + + IE L
Sbjct: 553 SQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNEYEIGVHISDVSHFLIEDNEL 612
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR-QGEVCNAVT-----VSVVLHSD--- 287
D +R TS++L M P+ L M L Q + +V V+L
Sbjct: 613 -DNIVKERSTSIYLANEVIHMLPQSLCMRCSLLPGQDKFAFSVFWRMNGKGVMLQKKPEF 671
Query: 288 -----GSIAEYSVDNS---IIKPTYMLTYESATXXXXXXXXXXXXXKIL---SEAAALRL 336
S ++++ +++ I P T ++L A+++R
Sbjct: 672 CRTVINSCSQFAYEHAQKIIDNPNERFTENDFPTILNGFNPDDIRNRVLWLHDIASSIR- 730
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY- 395
+ RL GA+ + R + +P EP+ + VE Q + A RL+ E M+L +A+A +
Sbjct: 731 KTRLDNGALTINNAKLRF-LLDPITGEPL-SFEVEKQRE-ANRLIEEFMLLANQAVARFI 787
Query: 396 -GSFNNLALPYRGQP 409
SF ++A+ R P
Sbjct: 788 HDSFPDIAV-LRNHP 801
Score = 113 (44.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 37/156 (23%), Positives = 70/156 (44%)
Query: 163 VEKFDHKDISNFLQK----AEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRI 218
++ F+ + I + Q ++++L RKDL + ++ ID S +L D
Sbjct: 534 IKPFEQRFIDIYSQPPPPISQEDLRQRKDLRKMCIFTIDPMTARDLDDAVSIEKLGDNEY 593
Query: 219 KVYIHVADPTKY-IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNA 277
++ +H++D + + IE L D +R TS++L M P+ L M SL G+ A
Sbjct: 594 EIGVHISDVSHFLIEDNEL-DNIVKERSTSIYLANEVIHMLPQSLCMR-CSLLPGQDKFA 651
Query: 278 VTVSVVLHSDGSIAEYSVD--NSIIKPTYMLTYESA 311
+V ++ G + + + ++I YE A
Sbjct: 652 FSVFWRMNGKGVMLQKKPEFCRTVINSCSQFAYEHA 687
Score = 82 (33.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L +P Y FTSPIRRY D+L H
Sbjct: 878 HYALSIPIYTHFTSPIRRYPDILVH 902
>TIGR_CMR|SO_3935 [details] [associations]
symbol:SO_3935 "ribonuclease R" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD InterPro:IPR013668
Pfam:PF08461 TIGRFAMs:TIGR02063 RefSeq:NP_719466.1
ProteinModelPortal:Q8EAG7 GeneID:1171573 KEGG:son:SO_3935
PATRIC:23527548 ProtClustDB:CLSK907414 Uniprot:Q8EAG7
Length = 808
Score = 128 (50.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 50/234 (21%), Positives = 92/234 (39%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + + R DL L + ID A G ++++ +AD + Y+ S D
Sbjct: 254 ESDKVGRVDLRSLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWVAIADVSYYVRTDSALD 313
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A RG SV+ P+ PM PEK++ SL + + + + G ++ Y +
Sbjct: 314 TEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTISARGKLSGYKFYPA 373
Query: 299 IIKPTYMLTYESATXXXXXXXXXXXXXKILSEAAALRLQW------RLQQGAIDTATLET 352
++ TY + L+ + R ++GAI T+ET
Sbjct: 374 VMHSHARFTYTQVAAMLEGGPIAPEHEALFVHLQCLQSLYLALDEQRAERGAIAFETIET 433
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + N + I+ V + A +++ E MIL + A + + + YR
Sbjct: 434 QF-IFNDQRK---IDKIVPRARNQAHKIIEECMILANVSAAKFVKKHKGEILYR 483
Score = 74 (31.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ + +++ MR A G L L Y FTSPIRRY DL+ H
Sbjct: 526 ADRPDAELIQVMLLRSMRQAIYTPDNEGHFG-LALEEYAHFTSPIRRYPDLVLH 578
>DICTYBASE|DDB_G0293614 [details] [associations]
symbol:DDB_G0293614 "putative exoribonuclease"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0293614 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AAFI02000218 GO:GO:0000176 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
SMART:SM00670 RefSeq:XP_629050.1 ProteinModelPortal:Q54BH9
STRING:Q54BH9 EnsemblProtists:DDB0234145 GeneID:8629340
KEGG:ddi:DDB_G0293614 InParanoid:Q54BH9 ProtClustDB:CLSZ2429248
Uniprot:Q54BH9
Length = 1006
Score = 136 (52.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 63/251 (25%), Positives = 102/251 (40%)
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTK 229
DI + + A+ ++ RKDL ++++D L G ++V +H+AD +
Sbjct: 457 DIMDRVTSAD--MVGRKDLRKECIFSVDPPGCTDIDDALHIKDLGKGIMEVGVHIADVSH 514
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT-VSVVLHSDG 288
+++ G+ D++A R TSV+L M P +L+ SL A + + + G
Sbjct: 515 FVQEGTAIDEEAANRSTSVYLVDRRIDMLPGELSGNLCSLMSNVDRFAFSCIWKINQHTG 574
Query: 289 SIAEYSVDNSIIKPTYMLTYESATXXXXXXXXXXXXXKIL----SEAAALRLQWRLQQGA 344
I SII+ LTYE A L S A LR Q R +GA
Sbjct: 575 EIIAVEYTKSIIRSCASLTYEQAQIRIDDKSQNDQITVNLRNLNSLAKILRKQ-RFDRGA 633
Query: 345 IDTATLETRIKVAN-PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNL 401
+ A+ + + K DP + +Y Q ++ E M+L +A Y F
Sbjct: 634 LYLASPQVKFKTEELGGDPSDV-EIY---QLRETNSMIEEFMLLANIWVAKKIYKHFPGC 689
Query: 402 ALPYRGQPQSN 412
A+ R P N
Sbjct: 690 AM-LRRHPTPN 699
Score = 66 (28.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 456 YVQFTSPIRRYMDLLAH 472
Y FTSPIRRY D++ H
Sbjct: 778 YTHFTSPIRRYPDIIVH 794
>RGD|1304646 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISO]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 RGD:1304646
GO:GO:0003723 GO:GO:0004540 SMART:SM00670 IPI:IPI00392641
PRIDE:D3ZAM5 Ensembl:ENSRNOT00000012182 UCSC:RGD:1304646
Uniprot:D3ZAM5
Length = 565
Score = 148 (57.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+++ NR+DL HL V ++D L +G ++V +H+AD + +I PG+ D
Sbjct: 460 EEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNALD 519
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+++ +RGT+V+L M PE L+ SLR
Sbjct: 520 QESARRGTTVYLCEKRIDMVPELLSSNLCSLR 551
>DICTYBASE|DDB_G0285435 [details] [associations]
symbol:DDB_G0285435 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0285435 EMBL:AAFI02000079
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_638051.1
ProteinModelPortal:Q54N92 EnsemblProtists:DDB0186491 GeneID:8625097
KEGG:ddi:DDB_G0285435 InParanoid:Q54N92 OMA:RYNDISW Uniprot:Q54N92
Length = 1642
Score = 135 (52.6 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 42/135 (31%), Positives = 64/135 (47%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQD----GR--IKVYIHVADPTKYIEPGSLSD 238
R DLTHL ID S L D G ++ IH++D + ++E GS D
Sbjct: 984 RVDLTHLVPVTIDPPSSTDLDDAISFRCLTDEFDEGMSVFEIGIHISDVSAFLEKGSKLD 1043
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR--QGEVCNAVTVSVVLHSDGSIAEYSVD 296
K+A R +++L + PM P+ L+ SL+ Q C ++ V + SDG I +Y
Sbjct: 1044 KEAEYRLNTIYLIGSIIPMLPKNLSSSTCSLKLYQKRFCFSLLVKI--RSDGKIIDYKFC 1101
Query: 297 NSIIKPTYMLTYESA 311
S ++ L+YE A
Sbjct: 1102 KSNLRSKGHLSYEKA 1116
Score = 70 (29.7 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 456 YVQFTSPIRRYMDLLAHYQVGLQ 478
Y FT+PIRRYMD+ H + LQ
Sbjct: 1464 YTHFTAPIRRYMDVNIHRALSLQ 1486
Score = 43 (20.2 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 151 IKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLN 184
IKPQQV+ P + K + LQ + NL N
Sbjct: 90 IKPQQVSPYQPPIPKKQQQQ-QQPLQISNSNLTN 122
Score = 39 (18.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 78 QELVAIRKRLRVFAKVKVSSGELLEDKLENQVL 110
Q+ A + ++ +K GEL++ K ENQV+
Sbjct: 731 QQAQAQAQHHKIQSKKHQLIGELMKLKEENQVI 763
>WB|WBGene00018612 [details] [associations]
symbol:F48E8.6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:FO081421 GO:GO:0003723 GO:GO:0090305
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:HIYEYRE HOGENOM:HOG000017705
PIR:T16409 RefSeq:NP_498160.2 ProteinModelPortal:Q09568 SMR:Q09568
STRING:Q09568 PaxDb:Q09568 EnsemblMetazoa:F48E8.6 GeneID:175748
KEGG:cel:CELE_F48E8.6 UCSC:F48E8.6 CTD:175748 WormBase:F48E8.6
InParanoid:Q09568 NextBio:889474 Uniprot:Q09568
Length = 848
Score = 110 (43.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 37/135 (27%), Positives = 58/135 (42%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQD--GR----IKVYIHVADPTKYIEPGSLSD 238
R+D V+ ID A + D G+ +++ +H+AD T +++ G+ D
Sbjct: 333 RRDFRSDIVFTIDPKTARDLDDALHAKHIDDCDGKGTPGLEIGVHIADVTFFLKEGTELD 392
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV--D 296
K A +RG S +L PM P L + SL G + ++ S V Y V
Sbjct: 393 KWASERGNSTYLSQTVIPMLPRILCEQLCSLNPG--VDRLSFSTVFKMSYEAELYDVWFG 450
Query: 297 NSIIKPTYMLTYESA 311
S+I+ L YE A
Sbjct: 451 RSVIRSRVKLAYEHA 465
Score = 85 (35.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 426 VRSSAIVKIMRAAAI--DFRKPV---RHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAA 480
V SS +K M+ A F P+ H L + Y FTSPIRRY D++ H Q+ A
Sbjct: 627 VISSLTIKPMQQAKYFCTFEMPLSFYHHFALNVDHYTHFTSPIRRYPDVIVHRQLAA-AL 685
Query: 481 AWVSVGAQIGDEVE 494
+ ++ +E++
Sbjct: 686 GYNERSERVPEEIQ 699
>UNIPROTKB|F2Z2C0 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 SMART:SM00670 EMBL:AL391384
HGNC:HGNC:20604 ChiTaRS:DIS3 IPI:IPI00978109
ProteinModelPortal:F2Z2C0 SMR:F2Z2C0 PRIDE:F2Z2C0
Ensembl:ENST00000490646 ArrayExpress:F2Z2C0 Bgee:F2Z2C0
Uniprot:F2Z2C0
Length = 559
Score = 143 (55.4 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 179 EDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL HL + ++D L++G ++V +H+AD + +I PG+ D
Sbjct: 461 EKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALD 520
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+++ +RGT+V+L M PE L+ SL+
Sbjct: 521 QESARRGTTVYLCEKRIDMVPELLSSNLCSLK 552
>POMBASE|SPBC609.01 [details] [associations]
symbol:SPBC609.01 "ribonuclease II (RNB) family"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPBC609.01
GO:GO:0005829 EMBL:CU329671 GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 PROSITE:PS01175 OrthoDB:EOG4MGWGN PIR:T40572
RefSeq:NP_596311.1 ProteinModelPortal:O94525
EnsemblFungi:SPBC609.01.1 GeneID:2540838 KEGG:spo:SPBC609.01
OMA:LHEVATH NextBio:20801955 Uniprot:O94525
Length = 1157
Score = 128 (50.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 34/100 (34%), Positives = 57/100 (57%)
Query: 215 DGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEV 274
DG I + IHVAD Y++ D +A R + V L + P P+K++ E +SL +G
Sbjct: 631 DGVITLGIHVADVAYYVKQDMPLDDEAANRVSEVQLLQGSVPFLPKKVSEE-ISLIEGHD 689
Query: 275 CNAVTVSVVLHSD---GSIAEYSVDNSIIKPTYMLTYESA 311
C +T+S+V+ D G++ + S+ S+I P+ ++ ESA
Sbjct: 690 C--LTISIVVQLDLKSGAVLQCSLGPSVIHPSSFISLESA 727
Score = 65 (27.9 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K V H V P Y F P RRY+D+ Q+
Sbjct: 887 KDVSHFVFSCPYYTHFCHPTRRYIDICVQRQL 918
>POMBASE|SPCC16C4.09 [details] [associations]
symbol:sts5 "RNB-like protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=ISM] [GO:0032153 "cell division site"
evidence=IDA] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPCC16C4.09
GO:GO:0005829 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0032153 GO:GO:0003723 GO:GO:0006401 GO:GO:0007049
GO:GO:0004527 GO:GO:0004540 eggNOG:COG0557 PROSITE:PS01175
OrthoDB:EOG4MGWGN EMBL:D58421 PIR:T41099 PIR:T45283
RefSeq:NP_587919.1 ProteinModelPortal:O74454 STRING:O74454
EnsemblFungi:SPCC16C4.09.1 GeneID:2539180 KEGG:spo:SPCC16C4.09
OMA:HESNINS NextBio:20800351 GO:GO:2000115 Uniprot:O74454
Length = 1066
Score = 130 (50.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 38/154 (24%), Positives = 75/154 (48%)
Query: 160 VPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRI- 218
V G + +D+ F++ N +++ ++ +K + ++ SA ++
Sbjct: 585 VAGCADYRSEDVFLFVK----NDVSKAAVSEVKQHESNINSSSATDFVSSAFHIRPTSTG 640
Query: 219 -KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNA 277
V IHV D ++ IEPGS D++ +R +V L + P+FP L E +SLR+ + C
Sbjct: 641 YHVGIHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKSVPLFPTTLG-EALSLREDKDCYT 699
Query: 278 VTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
+++ + + S G I + ++I+P T + A
Sbjct: 700 MSLLLDVSSTGKIRGTWIGWAVIRPRKAYTMKEA 733
Score = 62 (26.9 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 459 FTSPIRRYMDLLAHYQVGL 477
FT+P+ RY D++ HYQ+ L
Sbjct: 913 FTAPLERYGDIVVHYQLQL 931
>SGD|S000002701 [details] [associations]
symbol:SSD1 "Translational repressor with a role in polar
growth and wall integrity" species:4932 "Saccharomyces cerevisiae"
[GO:0005933 "cellular bud" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0000900 "translation
repressor activity, nucleic acid binding" evidence=IGI] [GO:0060237
"regulation of fungal-type cell wall organization" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IGI]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 SGD:S000002701 GO:GO:0005634 GO:GO:0005935
GO:GO:0051301 GO:GO:0007067 EMBL:BK006938 GO:GO:0048027
GO:GO:0000932 GO:GO:0004540 GO:GO:0008298 GO:GO:0060237
GO:GO:0010494 GO:GO:0000900 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 OrthoDB:EOG4MGWGN EMBL:U51031 EMBL:M60318
EMBL:M63004 PIR:A39578 RefSeq:NP_010579.1 ProteinModelPortal:P24276
DIP:DIP-6449N IntAct:P24276 MINT:MINT-605909 STRING:P24276
PaxDb:P24276 PeptideAtlas:P24276 PRIDE:P24276 EnsemblFungi:YDR293C
GeneID:851887 KEGG:sce:YDR293C CYGD:YDR293c
GeneTree:ENSGT00530000069300 HOGENOM:HOG000207194 OMA:DIFICGS
NextBio:969865 Genevestigator:P24276 GermOnline:YDR293C
Uniprot:P24276
Length = 1250
Score = 118 (46.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 215 DGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEV 274
+G +++ HV D T +IE GS D+ A KR ++VF+P + P+ E +SL G+
Sbjct: 721 NGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDE-LSLAPGK- 778
Query: 275 CNAVTVSVVLHSDGS---IAEYSVDNSIIKPTYMLTYE 309
+ T+SVV D S I V S I P+ +L+ E
Sbjct: 779 -ESATLSVVYTLDSSTLRIKSTWVGESTISPSNILSLE 815
Score = 75 (31.5 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
H L LP Y FT+P+RRY D + H Q+
Sbjct: 983 HYALNLPIYTHFTAPMRRYADHVVHRQL 1010
>UNIPROTKB|Q6GN11 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8355
"Xenopus laevis" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:BC073711
RefSeq:NP_001086021.1 UniGene:Xl.3437 ProteinModelPortal:Q6GN11
GeneID:444450 KEGG:xla:444450 Xenbase:XB-GENE-1013183
Uniprot:Q6GN11
Length = 1040
Score = 118 (46.6 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 41/133 (30%), Positives = 65/133 (48%)
Query: 184 NRKDL--THLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+R DL THL V++ID S L G +++ +H+AD T +++ + +D +A
Sbjct: 458 DRLDLRETHL-VFSIDPKGCEDVDDALSIRVLPSGDLELGVHIADVTHFVQHNTYTDIEA 516
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS---VDNS 298
R T+ +L M P L+ + SL G V + VSV+ D S E +
Sbjct: 517 RSRATTYYLADRRNDMLPLILSADLCSLL-GAV-DRYAVSVIWEMDCSTYEIRRVWYGRT 574
Query: 299 IIKPTYMLTYESA 311
II+ +Y L+YE A
Sbjct: 575 IIRSSYKLSYEVA 587
Score = 73 (30.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 776 HYGLALEKYTHFTSPIRRYADIVVH 800
>GENEDB_PFALCIPARUM|MAL13P1.289 [details] [associations]
symbol:MAL13P1.289 "mitotic control protein
dis3 homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 RefSeq:XP_001350300.2
EnsemblProtists:MAL13P1.289:mRNA GeneID:813851 KEGG:pfa:MAL13P1.289
EuPathDB:PlasmoDB:PF3D7_1359300 HOGENOM:HOG000281701
ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 123 (48.4 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 57/224 (25%), Positives = 95/224 (42%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQ-DGRIK---VY---IHVADPTKYIEPGSLS 237
R D ++ ++ID S LQ DG I+ +Y +H+AD + +++ S
Sbjct: 595 RNDFRNVLTFSIDPPGCQDIDDALSVEFLQQDGNIEKNYIYRIGVHIADVSYFVKQNSPI 654
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
D +A KR T+V+L M P+ L SL +GE +T S + + D I + SV
Sbjct: 655 DLEASKRCTTVYLINQRVDMLPKLLTTNLCSLVEGE--ERLTYSCIFCFNKDFDIIDISV 712
Query: 296 DNSIIKPTYMLTYESATXXXXXXXXXXXXXK---ILSEAAA-LRLQWRLQQGAIDT-ATL 350
IIK +YE A K +L++ A L+ +W GA++
Sbjct: 713 KKCIIKSNKSFSYEQAQNVIDDKNDQSDTAKSLRLLNKIAKHLKQKWS-NDGALELRGNT 771
Query: 351 ETRIKV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA 393
E + AN + YV + + +L+ M+L ++A
Sbjct: 772 EVLFEFEANDFSKAKNLKPYVCYETN---KLIEAFMLLANRSVA 812
Score = 70 (29.7 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+RH L Y FTSPIRRY D++ H
Sbjct: 903 LRHYGLAADIYTFFTSPIRRYADIMVH 929
Score = 40 (19.1 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 27/120 (22%), Positives = 56/120 (46%)
Query: 92 KVKVSSGELLEDKLENQ------VLQKGLLLE-FKKDSDRV---LLAVAQRP-----DGK 136
KVK+ + ++KL+N V +K +++ + K++D V ++ + ++ D +
Sbjct: 386 KVKIEINNMNKEKLQNSYIKNEDVKEKENVIDIYNKNNDIVQKDMINLYEKKMNITYDKQ 445
Query: 137 KNWMVYDQ-NGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLN-RKDLTHLKVY 194
N +Y+ N S K + VV G+ K+ +++ +NL N +K L K +
Sbjct: 446 INENIYNNINNRHISEKKKLYGKVV-GIISRCRKEYGGIIKEYSNNLNNIKKKLMFFKAF 504
>UNIPROTKB|Q8IDB6 [details] [associations]
symbol:MAL13P1.289 "Mitotic control protein dis3 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0004527 GO:GO:0000178
GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966 PROSITE:PS01175
KO:K12585 RefSeq:XP_001350300.2 EnsemblProtists:MAL13P1.289:mRNA
GeneID:813851 KEGG:pfa:MAL13P1.289 EuPathDB:PlasmoDB:PF3D7_1359300
HOGENOM:HOG000281701 ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 123 (48.4 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 57/224 (25%), Positives = 95/224 (42%)
Query: 185 RKDLTHLKVYAIDVXXXXXXXXXXSAMRLQ-DGRIK---VY---IHVADPTKYIEPGSLS 237
R D ++ ++ID S LQ DG I+ +Y +H+AD + +++ S
Sbjct: 595 RNDFRNVLTFSIDPPGCQDIDDALSVEFLQQDGNIEKNYIYRIGVHIADVSYFVKQNSPI 654
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
D +A KR T+V+L M P+ L SL +GE +T S + + D I + SV
Sbjct: 655 DLEASKRCTTVYLINQRVDMLPKLLTTNLCSLVEGE--ERLTYSCIFCFNKDFDIIDISV 712
Query: 296 DNSIIKPTYMLTYESATXXXXXXXXXXXXXK---ILSEAAA-LRLQWRLQQGAIDT-ATL 350
IIK +YE A K +L++ A L+ +W GA++
Sbjct: 713 KKCIIKSNKSFSYEQAQNVIDDKNDQSDTAKSLRLLNKIAKHLKQKWS-NDGALELRGNT 771
Query: 351 ETRIKV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA 393
E + AN + YV + + +L+ M+L ++A
Sbjct: 772 EVLFEFEANDFSKAKNLKPYVCYETN---KLIEAFMLLANRSVA 812
Score = 70 (29.7 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+RH L Y FTSPIRRY D++ H
Sbjct: 903 LRHYGLAADIYTFFTSPIRRYADIMVH 929
Score = 40 (19.1 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 27/120 (22%), Positives = 56/120 (46%)
Query: 92 KVKVSSGELLEDKLENQ------VLQKGLLLE-FKKDSDRV---LLAVAQRP-----DGK 136
KVK+ + ++KL+N V +K +++ + K++D V ++ + ++ D +
Sbjct: 386 KVKIEINNMNKEKLQNSYIKNEDVKEKENVIDIYNKNNDIVQKDMINLYEKKMNITYDKQ 445
Query: 137 KNWMVYDQ-NGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLN-RKDLTHLKVY 194
N +Y+ N S K + VV G+ K+ +++ +NL N +K L K +
Sbjct: 446 INENIYNNINNRHISEKKKLYGKVV-GIISRCRKEYGGIIKEYSNNLNNIKKKLMFFKAF 504
>UNIPROTKB|Q5HVE0 [details] [associations]
symbol:CJE0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 110 (43.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 50/222 (22%), Positives = 84/222 (37%)
Query: 184 NRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL L ID A+ + ++Y+ +AD ++Y+ S DK+A
Sbjct: 214 NRMDLRALPFCTIDPIHAKDFD---DAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARN 270
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S++ P PM P L+ SL+ A + L + + + + II
Sbjct: 271 RGFSIYFPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSK 330
Query: 304 YMLTYESATXXXXXXXXXXXXXKI--LSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
Y+ + L E + RL+ A + T E R+ + D
Sbjct: 331 RRFNYDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKN-AFEFRTEELRMNL----D 385
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY---GSFNN 400
+ V ++ P+ L+ + M+L +A A G F N
Sbjct: 386 ENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRN 427
Score = 75 (31.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DL+ H
Sbjct: 496 HFGLGFDKYSHFTSPIRRYSDLILH 520
>TIGR_CMR|CJE_0734 [details] [associations]
symbol:CJE_0734 "RNB-like protein" species:195099
"Campylobacter jejuni RM1221" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0004540 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12573 RefSeq:YP_178745.1
ProteinModelPortal:Q5HVE0 STRING:Q5HVE0 GeneID:3230687
KEGG:cjr:CJE0734 PATRIC:20043197 HOGENOM:HOG000103239 OMA:DCMLLAN
ProtClustDB:CLSK878874 BioCyc:CJEJ195099:GJC0-751-MONOMER
Uniprot:Q5HVE0
Length = 644
Score = 110 (43.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 50/222 (22%), Positives = 84/222 (37%)
Query: 184 NRKDLTHLKVYAIDVXXXXXXXXXXSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL L ID A+ + ++Y+ +AD ++Y+ S DK+A
Sbjct: 214 NRMDLRALPFCTIDPIHAKDFD---DAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARN 270
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S++ P PM P L+ SL+ A + L + + + + II
Sbjct: 271 RGFSIYFPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSK 330
Query: 304 YMLTYESATXXXXXXXXXXXXXKI--LSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
Y+ + L E + RL+ A + T E R+ + D
Sbjct: 331 RRFNYDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKN-AFEFRTEELRMNL----D 385
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY---GSFNN 400
+ V ++ P+ L+ + M+L +A A G F N
Sbjct: 386 ENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRN 427
Score = 75 (31.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DL+ H
Sbjct: 496 HFGLGFDKYSHFTSPIRRYSDLILH 520
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 514 491 0.00082 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 76
No. of states in DFA: 618 (66 KB)
Total size of DFA: 273 KB (2145 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.95u 0.19s 38.14t Elapsed: 00:00:02
Total cpu time: 37.97u 0.19s 38.16t Elapsed: 00:00:02
Start: Tue May 21 08:43:05 2013 End: Tue May 21 08:43:07 2013