BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010247
(514 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224090693|ref|XP_002309062.1| predicted protein [Populus trichocarpa]
gi|222855038|gb|EEE92585.1| predicted protein [Populus trichocarpa]
Length = 792
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 261/312 (83%), Positives = 287/312 (91%), Gaps = 5/312 (1%)
Query: 167 DHKDISNFLQKAEDNL---LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
DH D + AED L +NRKDLTHLKVYAIDVDEADELDDALSA RLQDGRIKV+IH
Sbjct: 369 DHPD--EIISAAEDLLSEPINRKDLTHLKVYAIDVDEADELDDALSATRLQDGRIKVWIH 426
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
VADP +Y++PGS D++AM+RGTSVFLPTATYPMFPEKLAMEGMSL+QGEVCNAVTVSV+
Sbjct: 427 VADPARYVQPGSKVDREAMRRGTSVFLPTATYPMFPEKLAMEGMSLKQGEVCNAVTVSVI 486
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
LHSDG IAEYSVDNSIIKPTYMLTYESA+ELLH+NL+EEAELK+LSE+A+LRLQWR +QG
Sbjct: 487 LHSDGCIAEYSVDNSIIKPTYMLTYESASELLHMNLDEEAELKLLSESASLRLQWRCEQG 546
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
A+DTATLETRIKV NPEDPEP INLYVE+QADPAMRLVSEMM+LCGE IATYGS NN+ L
Sbjct: 547 AVDTATLETRIKVPNPEDPEPSINLYVENQADPAMRLVSEMMLLCGEVIATYGSCNNIPL 606
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
PYRGQPQSNIDVSAFAHLPEGPVRS+AIV+IMR A ID RKP+RHGVLGLPGYVQFTSPI
Sbjct: 607 PYRGQPQSNIDVSAFAHLPEGPVRSAAIVRIMRGAEIDIRKPIRHGVLGLPGYVQFTSPI 666
Query: 464 RRYMDLLAHYQV 475
RRY+DLLAHYQV
Sbjct: 667 RRYLDLLAHYQV 678
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 134/190 (70%), Gaps = 13/190 (6%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFR-----SLQLRRNKSNLGFRLPACRSE 55
M++VRAVNSCS+FRS+ PP+ SF+ + H R S R +KS GF P R +
Sbjct: 1 MISVRAVNSCSIFRSS--PPVSSFRCRL-NSHLRTTTSSSHHDRYSKSGFGF--PVFRFD 55
Query: 56 RQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLR--VFAKVKVSSG-ELLEDKLENQVLQK 112
L +S S+ S VD+V++EL + RKR R + + +K+++G E L+DKL NQ ++K
Sbjct: 56 LPILGHGDVRSYSLQSFVDTVLEELASYRKRKRQGICSAIKLTTGGEALDDKLVNQAVEK 115
Query: 113 GLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDIS 172
GLL+EFKKDS+RVLLAV QR DGKKNWMVYDQNG + SIKPQQ+T++VPGV+ FD IS
Sbjct: 116 GLLVEFKKDSERVLLAVVQRRDGKKNWMVYDQNGVTSSIKPQQITYIVPGVDNFDQTQIS 175
Query: 173 NFLQKAEDNL 182
+F+QKA+ NL
Sbjct: 176 SFIQKAQQNL 185
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 37/40 (92%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VGLQA AWVS+G QIGDEV+V+VEEAHPRDDII LKEVV
Sbjct: 752 EVGLQATAWVSLGTQIGDEVQVRVEEAHPRDDIISLKEVV 791
>gi|449520221|ref|XP_004167132.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease II,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 809
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/304 (81%), Positives = 280/304 (92%)
Query: 172 SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
S L+ ++ + +NRK+LT LKVYAIDVDEADELDDALSA RL DGRIK++IHVADP +++
Sbjct: 392 SLLLEASDPDEVNRKNLTDLKVYAIDVDEADELDDALSATRLSDGRIKIWIHVADPARFV 451
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
+PGS+ D++AMKRGTS+FLPTATYPMFPEKLAM+GMSL+QGE+CNAVTVSVVLHSDGSIA
Sbjct: 452 QPGSIVDREAMKRGTSIFLPTATYPMFPEKLAMDGMSLKQGEICNAVTVSVVLHSDGSIA 511
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
EYSV+NSIIKPTYMLTYESA+ELL LNL EEAELKILSEAA LRL WR QQGAID A+LE
Sbjct: 512 EYSVENSIIKPTYMLTYESASELLSLNLVEEAELKILSEAATLRLAWRRQQGAIDMASLE 571
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
TRIKVANPEDPEP INLYVE+QADPAMRLVSEMMILCGE IAT+GS NN+ LPYRGQPQ+
Sbjct: 572 TRIKVANPEDPEPEINLYVENQADPAMRLVSEMMILCGEVIATFGSRNNIPLPYRGQPQT 631
Query: 412 NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLA 471
NIDVSAFAHLPEGPVRSSAIV+ MRAA IDFRKP+ HG+LG+P YVQFTSPIRRY+DLLA
Sbjct: 632 NIDVSAFAHLPEGPVRSSAIVRTMRAAEIDFRKPMPHGILGIPCYVQFTSPIRRYLDLLA 691
Query: 472 HYQV 475
HYQV
Sbjct: 692 HYQV 695
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 124/187 (66%), Gaps = 20/187 (10%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN 60
+MA R VN+ S+FRS+ PPL +F R S L F P R Q
Sbjct: 26 IMAFRTVNTFSVFRSSLSPPLSAF---------------RWSSKLRFSSPLLRHRYQIFK 70
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVS-----SGELLEDKLENQVLQKGLL 115
G + S +S+ +++++EL A R+R RV A K+ SGE+ EDKL N+ L +GLL
Sbjct: 71 TGGGRLYSFYSVFENIIEELEAPRRRKRVSATAKMGLVGMGSGEVTEDKLVNRTLDRGLL 130
Query: 116 LEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFL 175
LEFKKDS+RVLLAVAQ+PDG KNWMV+DQNG S SIKPQQ+T++VPGVE FDH +I++F+
Sbjct: 131 LEFKKDSERVLLAVAQKPDGXKNWMVFDQNGVSSSIKPQQITYIVPGVENFDHTEIADFI 190
Query: 176 QKAEDNL 182
+KA+DNL
Sbjct: 191 KKAQDNL 197
>gi|449448900|ref|XP_004142203.1| PREDICTED: ribonuclease II, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 809
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/304 (81%), Positives = 280/304 (92%)
Query: 172 SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
S L+ ++ + +NRK+LT LKVYAIDVDEADELDDALSA RL DGRIK++IHVADP +++
Sbjct: 392 SLLLEASDPDEVNRKNLTDLKVYAIDVDEADELDDALSATRLSDGRIKIWIHVADPARFV 451
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
+PGS+ D++AMKRGTS+FLPTATYPMFPEKLAM+GMSL+QGE+CNAVTVSVVLHSDGSIA
Sbjct: 452 QPGSIVDREAMKRGTSIFLPTATYPMFPEKLAMDGMSLKQGEICNAVTVSVVLHSDGSIA 511
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
EYSV+NSIIKPTYMLTYESA+ELL LNL EEAELKILSEAA LRL WR QQGAID A+LE
Sbjct: 512 EYSVENSIIKPTYMLTYESASELLSLNLVEEAELKILSEAATLRLAWRRQQGAIDMASLE 571
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
TRIKVANPEDPEP INLYVE+QADPAMRLVSEMMILCGE IAT+GS NN+ LPYRGQPQ+
Sbjct: 572 TRIKVANPEDPEPEINLYVENQADPAMRLVSEMMILCGEVIATFGSRNNIPLPYRGQPQT 631
Query: 412 NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLA 471
NIDVSAFAHLPEGPVRSSAIV+ MRAA IDFRKP+ HG+LG+P YVQFTSPIRRY+DLLA
Sbjct: 632 NIDVSAFAHLPEGPVRSSAIVRTMRAAEIDFRKPMPHGILGIPCYVQFTSPIRRYLDLLA 691
Query: 472 HYQV 475
HYQV
Sbjct: 692 HYQV 695
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/187 (50%), Positives = 125/187 (66%), Gaps = 20/187 (10%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN 60
+MA R VN+ S+FRS+ PPL +F R S L F P R Q
Sbjct: 26 IMAFRTVNTFSVFRSSLSPPLSAF---------------RWSSKLRFSSPLLRHRYQIFK 70
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVS-----SGELLEDKLENQVLQKGLL 115
G + S +S+ +++++EL A R+R RV A K+ SGE+ EDKL N+ L +GLL
Sbjct: 71 TGGGRLYSFYSVFENIIEELEAPRRRKRVSATAKMGLVGMGSGEVTEDKLVNRTLDRGLL 130
Query: 116 LEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFL 175
LEFKKDS+RVLLAVAQ+PDGKKNWMV+DQNG S SIKPQQ+T++VPGVE FDH +I++F+
Sbjct: 131 LEFKKDSERVLLAVAQKPDGKKNWMVFDQNGVSSSIKPQQITYIVPGVENFDHTEIADFI 190
Query: 176 QKAEDNL 182
+KA+DNL
Sbjct: 191 KKAQDNL 197
>gi|297740364|emb|CBI30546.3| unnamed protein product [Vitis vinifera]
Length = 720
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/293 (87%), Positives = 279/293 (95%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++RKDLTHLKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT I+PGS+ D++AM
Sbjct: 315 VDRKDLTHLKVYAIDVDEADELDDALSATRLLDGRIKVWIHVADPTSLIQPGSIVDREAM 374
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRGTS+FLPTATYPMFPEKLAMEGMSL+QGE+CNAVTVSVVLHSDGSIAE +VDNSIIKP
Sbjct: 375 KRGTSIFLPTATYPMFPEKLAMEGMSLKQGELCNAVTVSVVLHSDGSIAECTVDNSIIKP 434
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYMLTYESA+ELLHLNLEEE ELKILSEAAALRL+WR QGAIDT+TLETRIKVANP+DP
Sbjct: 435 TYMLTYESASELLHLNLEEEVELKILSEAAALRLRWRRNQGAIDTSTLETRIKVANPDDP 494
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP INLYVEDQADPAMRLV+EMMILCGEA+ATYGS NN+ LPYRGQPQSN+D SAFAHLP
Sbjct: 495 EPSINLYVEDQADPAMRLVTEMMILCGEAVATYGSCNNIPLPYRGQPQSNVDTSAFAHLP 554
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVRSSA+VKI+RAA +DFRKP+RHGVLGLPGYVQFTSPIRRYMDLLAHYQV
Sbjct: 555 EGPVRSSALVKILRAAEMDFRKPIRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 607
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 95/109 (87%), Gaps = 3/109 (2%)
Query: 77 MQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRP 133
M+EL A RKR R++A K+ SSG+LLEDKL+NQVLQKGLLLEF+KDS+RVLLAVAQ+
Sbjct: 1 MEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEFRKDSERVLLAVAQKA 60
Query: 134 DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNL 182
DGKKNWMV+DQNG + SIKPQQVT++VPG++ FD +ISNF+QKA+DNL
Sbjct: 61 DGKKNWMVFDQNGVTSSIKPQQVTYIVPGIDNFDQTEISNFIQKAQDNL 109
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 37/40 (92%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VGLQA+AWVS+G QIGDEVEVKVEEAHPRDD++ LKEV
Sbjct: 681 EVGLQASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEVT 720
>gi|225440376|ref|XP_002266667.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis
vinifera]
Length = 792
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/293 (87%), Positives = 279/293 (95%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++RKDLTHLKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT I+PGS+ D++AM
Sbjct: 387 VDRKDLTHLKVYAIDVDEADELDDALSATRLLDGRIKVWIHVADPTSLIQPGSIVDREAM 446
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRGTS+FLPTATYPMFPEKLAMEGMSL+QGE+CNAVTVSVVLHSDGSIAE +VDNSIIKP
Sbjct: 447 KRGTSIFLPTATYPMFPEKLAMEGMSLKQGELCNAVTVSVVLHSDGSIAECTVDNSIIKP 506
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYMLTYESA+ELLHLNLEEE ELKILSEAAALRL+WR QGAIDT+TLETRIKVANP+DP
Sbjct: 507 TYMLTYESASELLHLNLEEEVELKILSEAAALRLRWRRNQGAIDTSTLETRIKVANPDDP 566
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP INLYVEDQADPAMRLV+EMMILCGEA+ATYGS NN+ LPYRGQPQSN+D SAFAHLP
Sbjct: 567 EPSINLYVEDQADPAMRLVTEMMILCGEAVATYGSCNNIPLPYRGQPQSNVDTSAFAHLP 626
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVRSSA+VKI+RAA +DFRKP+RHGVLGLPGYVQFTSPIRRYMDLLAHYQV
Sbjct: 627 EGPVRSSALVKILRAAEMDFRKPIRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 679
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 148/184 (80%), Gaps = 6/184 (3%)
Query: 2 MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNR 61
MAVRAVN+CS+FRS + PPL F+ C +HF + Q + + NLG P CR++R FL+
Sbjct: 1 MAVRAVNTCSIFRSTSSPPLYPFR--CRLHHFGAFQCK-SYPNLGLHFPICRTDRVFLSH 57
Query: 62 SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEF 118
G QSCSV+SLV+SVM+EL A RKR R++A K+ SSG+LLEDKL+NQVLQKGLLLEF
Sbjct: 58 GGVQSCSVYSLVESVMEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEF 117
Query: 119 KKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKA 178
+KDS+RVLLAVAQ+ DGKKNWMV+DQNG + SIKPQQVT++VPG++ FD +ISNF+QKA
Sbjct: 118 RKDSERVLLAVAQKADGKKNWMVFDQNGVTSSIKPQQVTYIVPGIDNFDQTEISNFIQKA 177
Query: 179 EDNL 182
+DNL
Sbjct: 178 QDNL 181
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 37/40 (92%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VGLQA+AWVS+G QIGDEVEVKVEEAHPRDD++ LKEV
Sbjct: 753 EVGLQASAWVSLGKQIGDEVEVKVEEAHPRDDVLSLKEVT 792
>gi|356566110|ref|XP_003551278.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Glycine max]
Length = 783
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/315 (76%), Positives = 281/315 (89%), Gaps = 6/315 (1%)
Query: 167 DHKD------ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
DH D S L ++ + ++RK+LT LKVYAIDVDEADELDDALSA +LQDGRIKV
Sbjct: 354 DHSDEIISAAQSLLLDSSDPDEIDRKNLTDLKVYAIDVDEADELDDALSATKLQDGRIKV 413
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+IHVADPT+Y++PGS+ D++AM+RGTSVFLPTATY MFPE LAM GMSLRQGE+CNAVTV
Sbjct: 414 WIHVADPTRYVQPGSIVDREAMRRGTSVFLPTATYSMFPENLAMGGMSLRQGELCNAVTV 473
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRL 340
SVVLH+DGSIAEYSV NS+IKPTYMLTYESA+ELLHLNL+EE EL+ILSEAA LR WR
Sbjct: 474 SVVLHNDGSIAEYSVFNSVIKPTYMLTYESASELLHLNLQEEGELRILSEAANLRSNWRR 533
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
QQGAI+TATL+TRIKV+NPEDPEP + LYVE+QADPAMRLVSEMMILCGEA+AT+GS N+
Sbjct: 534 QQGAIETATLDTRIKVSNPEDPEPSMKLYVENQADPAMRLVSEMMILCGEAVATFGSRND 593
Query: 401 LALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFT 460
+ LPYRGQPQS+++VS F+HLPEGPVRS A+V++MRAA IDFRKP RHGVLG+PGYVQFT
Sbjct: 594 IPLPYRGQPQSDMNVSEFSHLPEGPVRSFALVRVMRAAEIDFRKPARHGVLGIPGYVQFT 653
Query: 461 SPIRRYMDLLAHYQV 475
SPIRRY+DLLAHYQV
Sbjct: 654 SPIRRYLDLLAHYQV 668
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 125/188 (66%), Gaps = 24/188 (12%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLN 60
MMAVRAV SCS+FR ++ PPL S ++ ++ +RS R +L R A
Sbjct: 1 MMAVRAVTSCSLFRPSS-PPLFSSALR--FFPYRS----RGPPSLSLRYGA--------- 44
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSS------GELLEDKLENQVLQKGL 114
+Q+ SV SL +S+M+EL A RKR + S+ EL ED+L N LQKGL
Sbjct: 45 --HTQTRSVQSLFNSLMEELRAARKRRQKRVSAAASNRMGLLNEELAEDRLVNHSLQKGL 102
Query: 115 LLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNF 174
LLEFKKDSDRVLLAVAQRPDGKKNWMV DQNG + SIKPQQVT++VPG++ FD DI++F
Sbjct: 103 LLEFKKDSDRVLLAVAQRPDGKKNWMVSDQNGFTSSIKPQQVTYIVPGIDNFDQADIADF 162
Query: 175 LQKAEDNL 182
QKA+DN+
Sbjct: 163 AQKAQDNM 170
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 38/41 (92%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 514
+VG QA+AW+ VG QIGDEVEVKVEEAHPRDDI++LKEVV+
Sbjct: 742 EVGFQASAWIPVGMQIGDEVEVKVEEAHPRDDILFLKEVVK 782
>gi|42567593|ref|NP_195845.2| Ribonuclease II/R family protein [Arabidopsis thaliana]
gi|75127176|sp|Q6NQJ6.1|RNR1_ARATH RecName: Full=Ribonuclease II, chloroplastic/mitochondrial;
Short=AtmtRNaseII; Short=RNase II; AltName: Full=Protein
EMBRYO DEFECTIVE 2730; AltName: Full=Ribonucleotide
reductase 1; Flags: Precursor
gi|34222082|gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana]
gi|51970908|dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana]
gi|332003067|gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana]
Length = 803
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/293 (82%), Positives = 268/293 (91%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS D++A
Sbjct: 397 VRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGSKVDREAR 456
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EYSVDNSII+P
Sbjct: 457 RRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSVDNSIIRP 516
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIKV NPEDP
Sbjct: 517 TYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIKVVNPEDP 576
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDVSAFAHLP
Sbjct: 577 EPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDVSAFAHLP 636
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 637 EGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 764 EVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
>gi|297806163|ref|XP_002870965.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]
gi|297316802|gb|EFH47224.1| EMB2730 [Arabidopsis lyrata subsp. lyrata]
Length = 803
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/300 (80%), Positives = 273/300 (91%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ ++ + + R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS
Sbjct: 390 ESSDIDAVRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGS 449
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A +RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG IA+YSV
Sbjct: 450 KVDREARRRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCIADYSV 509
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+NSII+PTYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIK
Sbjct: 510 ENSIIRPTYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIK 569
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
V NPEDPEP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDV
Sbjct: 570 VVNPEDPEPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDV 629
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
SAFAHLPEGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 630 SAFAHLPEGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
M++VRA+N CS+ R SA PP+ F+ + R+ LR S LG P RS R+
Sbjct: 1 MISVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLGLNFPLLRSNRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
L + + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 SLGNNDAPSCSSCIHSLVESVSEELGSISRRKGSRIRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD++RVLLAV R DGKKNWMV+DQNG +CSIKPQQ+T++VPGV FDH
Sbjct: 118 ELEAGLLLEFKKDAERVLLAVVHRRDGKKNWMVFDQNGVTCSIKPQQITYIVPGVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 45/60 (75%), Gaps = 4/60 (6%)
Query: 458 QFTSPIRRYM-DLLAHY---QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
++T+ I R++ D +A +VG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 744 KYTALILRFVKDRIASLLLVEVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
>gi|218189347|gb|EEC71774.1| hypothetical protein OsI_04386 [Oryza sativa Indica Group]
gi|222619521|gb|EEE55653.1| hypothetical protein OsJ_04037 [Oryza sativa Japonica Group]
Length = 774
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/291 (75%), Positives = 256/291 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 370 RKDLSTLKVYAIDVDEADELDDALSAARLPDGRIKVWIHVADPTSLVQPRSIIDREAMHR 429
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT+PMFPE+LAM MSL+QG C +VTVSV+L DGSIAEYS++NSIIKPTY
Sbjct: 430 GTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVSVILQPDGSIAEYSIENSIIKPTY 489
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA+LR QWR QG+IDTA +E RIKVANP+DPEP
Sbjct: 490 MLTYESATELLYMNLEEEEELRILQEAASLRAQWRRSQGSIDTAMIEPRIKVANPDDPEP 549
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQ++PAM+LVSEMMILCGEA+A +GS NN+ALPYRG PQSN VSAF HLPEG
Sbjct: 550 NINLYVEDQSNPAMQLVSEMMILCGEAVAAFGSDNNIALPYRGHPQSNTAVSAFTHLPEG 609
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQ+
Sbjct: 610 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQI 660
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 106/157 (67%), Gaps = 6/157 (3%)
Query: 48 RLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLE 106
R + R+ F G + VH LVDSV++EL + ++R RV AK+ + + EL ++K++
Sbjct: 30 RPDSARAGWHFSLYGGCRGRQVHGLVDSVLEELRS-QRRGRVSAKIGLQGTKELSDNKID 88
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+ LQKGLLLEF+KDS+R LLAV +RPDGKKNW V DQNG SIKPQQVT+V+PG+ +
Sbjct: 89 KRTLQKGLLLEFQKDSERFLLAVVERPDGKKNWKVTDQNGILSSIKPQQVTYVIPGIINY 148
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
+H I F++KA+D L D T L+ +++ E D+
Sbjct: 149 NHSRIDEFIKKAQDLL----DPTVLECAWMELSENDK 181
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VG+QA A VS G ++GDEV V VE AHPRDDI+ + E+
Sbjct: 734 EVGIQATAVVSTG-KVGDEVSVVVEAAHPRDDILSVTEIT 772
>gi|357134851|ref|XP_003569029.1| PREDICTED: uncharacterized ribonuclease sll1290-like [Brachypodium
distachyon]
Length = 783
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/291 (74%), Positives = 257/291 (88%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT +++P S+ D++AM R
Sbjct: 377 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCFLQPRSIIDREAMHR 436
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTATYPMFPE+LAM MSL+QG C +V+VSV+L+ DGSIAEY ++NS+IKPTY
Sbjct: 437 GTSIFLPTATYPMFPERLAMNAMSLQQGTDCRSVSVSVILNPDGSIAEYKIENSVIKPTY 496
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA++R QWR QG+IDTA +E RIKVANP+DPEP
Sbjct: 497 MLTYESATELLYMNLEEEEELRILREAASIRAQWRCSQGSIDTAMIEPRIKVANPDDPEP 556
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQ +PAM+LVSEMMILCGEA+A++GS N+L LPYRG PQ+N VSAFA+LPEG
Sbjct: 557 NINLYVEDQTNPAMQLVSEMMILCGEAVASFGSDNDLPLPYRGHPQNNTAVSAFAYLPEG 616
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P RS A + ++RAA +DFRKPV HGVLG+PGYVQFTSPIRRY+DLLAHYQV
Sbjct: 617 PARSFASIALLRAAEMDFRKPVAHGVLGIPGYVQFTSPIRRYVDLLAHYQV 667
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 103/182 (56%), Gaps = 17/182 (9%)
Query: 2 MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNR 61
MA RA + C C P V+ + R L L R G PA + R
Sbjct: 6 MAARAASGC-----CCCSPAVAL----AFSRLRPL-LSRAAVRQG---PAAAATG---GR 49
Query: 62 SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLED-KLENQVLQKGLLLEFKK 120
+ S LVDSV++EL + R+ R A++ + + L D K++ + LQKG LLEF K
Sbjct: 50 FALSTTSRGRLVDSVLEELRSSRRAARFSARIGLHGTKQLSDIKIDKRTLQKGWLLEFHK 109
Query: 121 DSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAED 180
DS+R LLAV +RPDGKKNW+V DQNG SIKPQQVT+VVPG FD I+ FL+KA+D
Sbjct: 110 DSERSLLAVVERPDGKKNWVVTDQNGILSSIKPQQVTYVVPGTMNFDSSKIAEFLEKAQD 169
Query: 181 NL 182
L
Sbjct: 170 LL 171
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 463 IRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 512
I+ M L +VG+QA V+ G ++GDEV V VE AHPRDDI+ + E+
Sbjct: 730 IKDRMATLLLVEVGIQATTVVAAG-KVGDEVSVVVEMAHPRDDILSVTEI 778
>gi|242059199|ref|XP_002458745.1| hypothetical protein SORBIDRAFT_03g039500 [Sorghum bicolor]
gi|241930720|gb|EES03865.1| hypothetical protein SORBIDRAFT_03g039500 [Sorghum bicolor]
Length = 782
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/291 (74%), Positives = 257/291 (88%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 373 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPRSIIDREAMHR 432
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT PMFPE+LAM MSL+QG+ C +VTVSV+L+SDGSIAEY+++NS+IKPTY
Sbjct: 433 GTSIFLPTATIPMFPERLAMNAMSLQQGKECKSVTVSVILNSDGSIAEYTLENSVIKPTY 492
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA++R QWR QG+IDTA +E RIKV+NP+DPEP
Sbjct: 493 MLTYESATELLYMNLEEEEELRILQEAASIRAQWRHSQGSIDTAMIEPRIKVSNPDDPEP 552
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQA+PAM+LVSEMMILCGEA+A +GS NNL LPYRG PQSN VS F+HLPEG
Sbjct: 553 NINLYVEDQANPAMQLVSEMMILCGEAVAAFGSDNNLPLPYRGHPQSNTAVSVFSHLPEG 612
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQV
Sbjct: 613 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQV 663
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 101/142 (71%), Gaps = 6/142 (4%)
Query: 63 GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFKKD 121
G +S HS+VDSV+ EL R+R+RV AK+ + + EL ++K++ + LQKGLLLEF+KD
Sbjct: 48 GCRSRLAHSIVDSVLDEL-RYRRRVRVSAKIGLQGTKELPDNKIDKRTLQKGLLLEFQKD 106
Query: 122 SDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDN 181
S+R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +D
Sbjct: 107 SERSLLAVVERPDGKKNWMVTDQNGILSSIKPQQVTYVVPGIMNFDYSRIDEFLEKTQDL 166
Query: 182 LLNRKDLTHLKVYAIDVDEADE 203
L D T L+ +++ E D+
Sbjct: 167 L----DPTVLECAWMELSEKDK 184
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 463 IRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
I+ M L +VG+Q +S G ++GDEV V VE AHPRDDI+ ++EVV
Sbjct: 726 IKDRMGALLLVEVGMQITTTISRG-KVGDEVSVTVETAHPRDDILSVREVV 775
>gi|414879757|tpg|DAA56888.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 650
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/291 (73%), Positives = 254/291 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 241 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPHSIIDREAMHR 300
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPT T+PMFPE+LAM MSL+QG+ C +VTVSV+L+ DGSIAEY+++NS+IKPTY
Sbjct: 301 GTSIFLPTTTFPMFPERLAMNSMSLQQGKECKSVTVSVILNLDGSIAEYTLENSVIKPTY 360
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA +R QWR QG+IDTA +E RIKV+NP+DPEP
Sbjct: 361 MLTYESATELLYMNLEEEEELRILQEAARIREQWRRSQGSIDTAMIEPRIKVSNPDDPEP 420
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQA+PAM+LVSEMMILCGEA+A +G NNL LPYRG PQSN VS F+HLPEG
Sbjct: 421 NINLYVEDQANPAMQLVSEMMILCGEAVAAFGFDNNLPLPYRGHPQSNTAVSVFSHLPEG 480
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQV
Sbjct: 481 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQV 531
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 150 SIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
SIKPQQVT+VVPG+ FD+ I FL+K + NLL D T L+ +++ E D+
Sbjct: 3 SIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ-NLL---DPTILECAWMELSEKDK 52
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 463 IRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
++ M L +VG+Q +S G ++GD+V V VE AHPRDDI+ ++EVV
Sbjct: 594 VKDRMGALLLVEVGMQVTTTISRG-KVGDQVSVTVETAHPRDDILSVREVV 643
>gi|255586753|ref|XP_002533996.1| ribonuclease II, putative [Ricinus communis]
gi|223526007|gb|EEF28385.1| ribonuclease II, putative [Ricinus communis]
Length = 731
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 231/415 (55%), Positives = 269/415 (64%), Gaps = 111/415 (26%)
Query: 165 KFDHKDISNFLQKAEDNLL--------NRKDLTHLKVYAIDVDEADELDDALSAMRLQDG 216
+ DH D L AE+ LL +RKDLTHLKVYAIDVDEADELDDALSA +LQDG
Sbjct: 362 RTDHSD--EILSAAENLLLESVDPDKIHRKDLTHLKVYAIDVDEADELDDALSATKLQDG 419
Query: 217 RIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN 276
RIK++IHVADP +Y++PGS D++AMKRGTSVFLPTATYPMFPEKLAM+GMSL+QGEVCN
Sbjct: 420 RIKIWIHVADPGRYVQPGSKIDREAMKRGTSVFLPTATYPMFPEKLAMDGMSLKQGEVCN 479
Query: 277 AVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL 336
AV+VSVVLHSDG I + +
Sbjct: 480 AVSVSVVLHSDGWIDIW------------------------------------------I 497
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
+R+ GA++TATLETRIKVANPEDPEP INLYVE+QADPAMRLVSEMMILCGE +ATYG
Sbjct: 498 GYRM--GAVNTATLETRIKVANPEDPEPSINLYVENQADPAMRLVSEMMILCGEVVATYG 555
Query: 397 SFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGY 456
S NN+ LPYRGQPQSNIDVSAFAHLPEGPVRS+A+VKIMRAA DFRKPVRHG+LG+PGY
Sbjct: 556 SCNNIPLPYRGQPQSNIDVSAFAHLPEGPVRSAAVVKIMRAAEFDFRKPVRHGILGIPGY 615
Query: 457 VQ-----------------FTSPI-----------------------------RRYMDLL 470
V+ S I RRY L+
Sbjct: 616 VKAVLRGEPPPFSAGQLEGMASMINMQARVVRSLCNSNLRYWIIEFLKRQPKERRYRALI 675
Query: 471 AHY-----------QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVVR 514
+ +VG QA+AWVS G IGDE++V+V+EAHPRDD + L EVV+
Sbjct: 676 LRFIKDRIAALLLVEVGFQASAWVSTGVHIGDEIQVQVKEAHPRDDFVSLTEVVQ 730
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 111/186 (59%), Positives = 138/186 (74%), Gaps = 10/186 (5%)
Query: 1 MMAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQF-L 59
MMAVRAVN+CS+ + PP F ++C + R Q SNL R P R E QF
Sbjct: 1 MMAVRAVNTCSILHFSKAPPF--FLVRCRFKTLRFCQY----SNLSSRRPIIRCESQFQF 54
Query: 60 NRSGSQSCSVHSLVDSVMQELVAIRK--RLRVFAKVKVS-SGELLEDKLENQVLQKGLLL 116
+ + +S SV SLVDSVM+EL ++RK R RV +K++ SGELL+DKL N+ L+KGLLL
Sbjct: 55 HGTNIRSFSVQSLVDSVMEELASLRKSRRKRVCPAIKLTGSGELLDDKLVNRPLEKGLLL 114
Query: 117 EFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQ 176
EFKKD+DR+LLAVA+RPDGKKNWMVYDQNG + SIKPQQVT++VPGVE FDH +ISNF+Q
Sbjct: 115 EFKKDTDRILLAVARRPDGKKNWMVYDQNGVTSSIKPQQVTYIVPGVENFDHTEISNFVQ 174
Query: 177 KAEDNL 182
KA+DNL
Sbjct: 175 KAQDNL 180
>gi|414879754|tpg|DAA56885.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 783
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/291 (73%), Positives = 254/291 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 374 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPHSIIDREAMHR 433
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPT T+PMFPE+LAM MSL+QG+ C +VTVSV+L+ DGSIAEY+++NS+IKPTY
Sbjct: 434 GTSIFLPTTTFPMFPERLAMNSMSLQQGKECKSVTVSVILNLDGSIAEYTLENSVIKPTY 493
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
MLTYESATELL++NLEEE EL+IL EAA +R QWR QG+IDTA +E RIKV+NP+DPEP
Sbjct: 494 MLTYESATELLYMNLEEEEELRILQEAARIREQWRRSQGSIDTAMIEPRIKVSNPDDPEP 553
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
INLYVEDQA+PAM+LVSEMMILCGEA+A +G NNL LPYRG PQSN VS F+HLPEG
Sbjct: 554 NINLYVEDQANPAMQLVSEMMILCGEAVAAFGFDNNLPLPYRGHPQSNTAVSVFSHLPEG 613
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P RS A + ++RAA +DF+KPV HGVLG+PGYVQFTSPIRRY+DLLAHYQV
Sbjct: 614 PARSFANISVLRAAEMDFQKPVPHGVLGIPGYVQFTSPIRRYVDLLAHYQV 664
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFK 119
R G +S HS+VD VM+EL + R+ AK+ + + EL ++K+ + LQKGLLLEF+
Sbjct: 47 RGGCRSRLAHSIVDLVMEELRSRRRVRVS-AKIGLQGTKELPDNKIVKRTLQKGLLLEFQ 105
Query: 120 KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
KD +R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +
Sbjct: 106 KDPERSLLAVVERPDGKKNWMVTDQNGVMSSIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ 165
Query: 180 DNLLNRKDLTHLKVYAIDVDEADE 203
NLL D T L+ +++ E D+
Sbjct: 166 -NLL---DPTILECAWMELSEKDK 185
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 463 IRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
++ M L +VG+Q +S G ++GD+V V VE AHPRDDI+ ++EVV
Sbjct: 727 VKDRMGALLLVEVGMQVTTTISRG-KVGDQVSVTVETAHPRDDILSVREVV 776
>gi|7406421|emb|CAB85530.1| ribonuclease II-like protein [Arabidopsis thaliana]
Length = 782
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/293 (75%), Positives = 248/293 (84%), Gaps = 21/293 (7%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS D++A
Sbjct: 397 VRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGSKVDREAR 456
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG
Sbjct: 457 RRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGC------------- 503
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
A+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIKV NPEDP
Sbjct: 504 --------ASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIKVVNPEDP 555
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDVSAFAHLP
Sbjct: 556 EPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDVSAFAHLP 615
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 616 EGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 668
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 743 EVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 782
>gi|168012160|ref|XP_001758770.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689907|gb|EDQ76276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/297 (57%), Positives = 212/297 (71%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ NL+NR DLTHLKVY ID ++ADE+DD LSA+RL DGRIKV+IHVADPT+++ P L D
Sbjct: 309 DTNLVNRVDLTHLKVYTIDSEDADEIDDGLSAIRLPDGRIKVWIHVADPTRWVPPMHLLD 368
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A +R TS++LPT PMFP LA MSLRQG A+TVS++ H DGSIAE V S
Sbjct: 369 KEAKRRSTSIYLPTGAVPMFPMNLASTVMSLRQGHEACALTVSIIFHCDGSIAESEVMCS 428
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IKPTY L+Y++A ELL +N+EEEAEL +L+E A R +WR QGAID E IKV +
Sbjct: 429 TIKPTYRLSYDNAAELLSMNVEEEAELYLLAEVAKSRREWRNSQGAIDATVPEASIKVLD 488
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
P+ P+P I + V DQA PA +LVSEMMI CGEA+A +G N++LPYRGQ I
Sbjct: 489 PDSPKPSIIMSVVDQAGPASQLVSEMMIACGEALAAFGEEKNISLPYRGQASQEIPAGDM 548
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+PEGP R+ A+ + + A + F KP+ H LG+ GYVQFTSPIRRY DLLAHYQV
Sbjct: 549 EAIPEGPCRALALRRYLGRADMSFMKPISHAALGVRGYVQFTSPIRRYSDLLAHYQV 605
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 55/90 (61%)
Query: 90 FAKVKVSSGELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASC 149
AK + + + K L+KG+LLEF K+S + +LAV QRP+GKKNW+ DQ
Sbjct: 12 IAKAAIVNETTTDVKHSEGTLRKGVLLEFSKESGKYVLAVIQRPEGKKNWVAADQASLKL 71
Query: 150 SIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
PQQ+TF+VPG E F DIS F+ KA+
Sbjct: 72 PYSPQQITFIVPGAEDFKTADISAFINKAQ 101
>gi|302769946|ref|XP_002968392.1| hypothetical protein SELMODRAFT_145357 [Selaginella moellendorffii]
gi|300164036|gb|EFJ30646.1| hypothetical protein SELMODRAFT_145357 [Selaginella moellendorffii]
Length = 668
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 156/297 (52%), Positives = 199/297 (67%), Gaps = 25/297 (8%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ N +R DLT +KVY ID D +E+DD LSA L DGR+K++IH+ADPT+++EP + +
Sbjct: 271 DQNKDSRVDLTAMKVYTIDSDSTEEIDDGLSATELPDGRVKIWIHIADPTRWVEPEHIIE 330
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGT+V+LP T PMFP LA MSLRQ C AV+VSV+L DGSIAE SV +S
Sbjct: 331 REAKHRGTTVYLPEKTIPMFPMNLATGPMSLRQNTECCAVSVSVILDKDGSIAESSVCSS 390
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+IKP+ L+Y+SATEL+ L+EE EL +L++AA LR +WRL QGA+D +T + +KV N
Sbjct: 391 VIKPSMRLSYDSATELIMYQLDEERELNLLAKAARLRYEWRLSQGAVDLSTRQIEVKVTN 450
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
P+ EP I L V D P+ +LVSEMMILCGEAIA YG+ LALPYRGQ
Sbjct: 451 PDSFEPEIKLQVIDMTSPSGQLVSEMMILCGEAIAAYGNEKILALPYRGQSD-------- 502
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A ++ KP++H LGLPGYVQFTSPIRRY DLLAHYQV
Sbjct: 503 -----------------MAVEMNCTKPLQHSSLGLPGYVQFTSPIRRYSDLLAHYQV 542
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 114 LLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
+L+E KD +++ AV RP+GKKNW+ DQ G S S+KP +V +VVP VE F +DI
Sbjct: 1 MLVELVKDG-KLVCAVVDRPEGKKNWIAIDQYGNSHSVKPGKVRYVVPDVETFKPEDIVE 59
Query: 174 FLQKAE 179
FL++ E
Sbjct: 60 FLKQTE 65
>gi|302774276|ref|XP_002970555.1| hypothetical protein SELMODRAFT_147137 [Selaginella moellendorffii]
gi|300162071|gb|EFJ28685.1| hypothetical protein SELMODRAFT_147137 [Selaginella moellendorffii]
Length = 669
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/298 (52%), Positives = 200/298 (67%), Gaps = 26/298 (8%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ N +R DLT +KVY ID D +E+DD LSA L DGR+K++IH+ADPT+++EP + +
Sbjct: 271 DQNKDSRVDLTAMKVYTIDSDSTEEIDDGLSATELPDGRVKIWIHIADPTRWVEPEHIIE 330
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGT+V+LP T PMFP LA MSLRQ C AV+VSV+L DGSIAE SV +S
Sbjct: 331 REAKHRGTTVYLPEKTIPMFPMNLATGPMSLRQNTECCAVSVSVILDKDGSIAESSVCSS 390
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRL-QQGAIDTATLETRIKVA 357
+IKP+ L+Y+SATEL+ L+EE EL +L++AA LR +WRL QQGA+D +T + +KV
Sbjct: 391 VIKPSMRLSYDSATELIMYQLDEERELNLLAKAARLRYEWRLSQQGAVDLSTRQIEVKVT 450
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA 417
NP+ EP I L V D P+ +LVSEMMILCGEAIA YG+ LALPYRGQ
Sbjct: 451 NPDSFEPEIKLQVIDMTSPSGQLVSEMMILCGEAIAAYGNEKILALPYRGQSD------- 503
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A ++ KP++H LGLPGYVQFTSPIRRY DLLAHYQV
Sbjct: 504 ------------------MAVEMNCTKPLQHSSLGLPGYVQFTSPIRRYSDLLAHYQV 543
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 114 LLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
+L+E KD +++ AV RP+GKKNW+ DQ G S S+KP +V +VVP VE F +DI
Sbjct: 1 MLVELVKDG-KLVCAVVDRPEGKKNWIAIDQYGNSHSVKPGKVRYVVPDVETFKPEDIVE 59
Query: 174 FLQKAE 179
FL++ E
Sbjct: 60 FLKQTE 65
>gi|428227000|ref|YP_007111097.1| exoribonuclease II [Geitlerinema sp. PCC 7407]
gi|427986901|gb|AFY68045.1| Exoribonuclease II [Geitlerinema sp. PCC 7407]
Length = 675
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 137/293 (46%), Positives = 185/293 (63%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD LS L DGR +++IH+ADPT+++EPG D +A +
Sbjct: 264 DRLDLTHLKVYTIDDESTREIDDGLSLEYLPDGRERLWIHIADPTRWVEPGDELDLEARR 323
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP LA MSL QG++C A++ V+L ++G++ +YS+ S IKPT
Sbjct: 324 RGTTVYLPTGMIPMFPSDLATGPMSLIQGQICCALSFGVLLTAEGAVEDYSIHVSRIKPT 383
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L + E EL ++E A R +WR QGAI E+ IKV +D E
Sbjct: 384 YRLTYEDVDEMLQLGITAEPELNGIAEWARRRDRWRHAQGAISIRMPESSIKV---QDDE 440
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
++N+ + Q A +LV+EMMIL GE A YG + L +P+R Q Q + LP
Sbjct: 441 VVVNVLEDSQ---ARQLVAEMMILAGEVAAHYGQTHGLYMPFRNQTQPELPPEEELMQLP 497
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ AI + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+
Sbjct: 498 AGPVRACAIRRCMPRSEMSL-TPARHASLGLDTYTQVTSPIRRYTDLLAHFQI 549
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+QKG L+EF+ DR LAVA+RP+GKK+W+V D+ G S ++ P+QVT+ V + +
Sbjct: 1 MQKGTLIEFRLHGDR-RLAVAERPEGKKHWIVIDERGQSHTLHPRQVTYEV-ADQSYKPT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
+I FL + ++ L D + L+V + + V++ + AL A L
Sbjct: 59 EIPQFLAEVQNYL----DPSSLEVAWELLVEDGESTTPALLAQLL 99
>gi|427418757|ref|ZP_18908940.1| exoribonuclease R [Leptolyngbya sp. PCC 7375]
gi|425761470|gb|EKV02323.1| exoribonuclease R [Leptolyngbya sp. PCC 7375]
Length = 686
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 190/312 (60%), Gaps = 13/312 (4%)
Query: 170 DISNFLQKAEDNL-----LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHV 224
++S +QK DN +R DLTHLKVY ID + E+DD LS + DGR ++++H+
Sbjct: 258 EVSAMVQKRIDNPPPDADADRLDLTHLKVYTIDDESTREIDDGLSLESVGDGRKRIWVHI 317
Query: 225 ADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL 284
ADPT+++ PG D +A +R T+V+LPT PMFPE LA MSLRQGE+C A++ +VL
Sbjct: 318 ADPTRWLLPGDDIDLEARRRCTTVYLPTGMIPMFPEALATGPMSLRQGEICCALSFGIVL 377
Query: 285 HSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGA 344
G++ EY++ S IKPTY LTY+ E+L L L+ E EL ++E+A R QWR QGA
Sbjct: 378 DETGAVEEYAIKASRIKPTYRLTYDDVDEMLELGLKAEPELNEIAESAKRRRQWRKSQGA 437
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I E+ IKV D E I++ Q + + V+EMMIL GE A YG + LA+P
Sbjct: 438 ISINMPESSIKVI---DEEITIDVLENSQ---SRQTVAEMMILAGEVAARYGEAHALAIP 491
Query: 405 YRGQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
+R QP+ + + LP G VR SAI + M + + P RH LGL Y Q TSPI
Sbjct: 492 FRSQPEPELPSDNELLQLPSGWVRDSAIRRCMPRSEMGI-SPARHATLGLDYYSQVTSPI 550
Query: 464 RRYMDLLAHYQV 475
RRY DLL H+Q+
Sbjct: 551 RRYTDLLVHFQL 562
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK + L VA RP+GKKNW+V D NG S + P+Q+T++V ++
Sbjct: 1 MEKGALIEFKVQGN-PRLGVADRPEGKKNWVVIDGNGQSHVLHPRQITYIVVENGDYEPS 59
Query: 170 DISNFLQKAEDNL 182
DI+ F+ +AE N+
Sbjct: 60 DIAAFMAEAEPNI 72
>gi|428296785|ref|YP_007135091.1| exoribonuclease II [Calothrix sp. PCC 6303]
gi|428233329|gb|AFY99118.1| Exoribonuclease II [Calothrix sp. PCC 6303]
Length = 685
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 188/293 (64%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD LS RL DGR ++++H+ADPT+++ P D +A K
Sbjct: 279 DRLDLTHLKVYTIDDESTTEIDDGLSWERLSDGRDRLWVHIADPTRWLIPEGDLDLEARK 338
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG++C A++ +V+L DG+++EYS+ S++KPT
Sbjct: 339 RGSTVYLPTGMVPMFPELLATGPMSLLQGQICYALSFAVILDDDGAVSEYSIHTSLVKPT 398
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E++ +++ A R +WR QGAI E IKV + E
Sbjct: 399 YRLTYEDVDEMLDLGVEAEPEIEAIAKWAQKRRKWRYTQGAISINMPEAMIKVKDDE--- 455
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
I++ + D + + +LV+EMMI+ GE A YG + + LP+RGQPQ + LP
Sbjct: 456 --ISIDLMDDSH-SRQLVAEMMIVAGEVAARYGKEHGIPLPFRGQPQPELPPEQELMLLP 512
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 513 PGFVRACAMRRCMPKSEMSI-TPVRHSGLGLDTYTQATSPIRRYSDLLTHFQI 564
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ SDR L + RPDGK W V D+ G + S+ PQQVT+ V G + +
Sbjct: 1 MEKGTLVEFRVGSDR-RLGIVDRPDGKTRWFVIDERGQAHSLMPQQVTYAVTG-QTYLSS 58
Query: 170 DISNFL 175
I FL
Sbjct: 59 QIPGFL 64
>gi|354564734|ref|ZP_08983910.1| Exoribonuclease II [Fischerella sp. JSC-11]
gi|353549860|gb|EHC19299.1| Exoribonuclease II [Fischerella sp. JSC-11]
Length = 681
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/297 (45%), Positives = 185/297 (62%), Gaps = 8/297 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D +NR DLT+LKVY ID + E+DD LS +L DGR ++++H+ADPT+++ P D
Sbjct: 274 DPDVNRLDLTYLKVYTIDDESTTEIDDGLSWEQLPDGRERLWVHIADPTRFLMPEDELDL 333
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG++V+LPT PMFPE LA MSL QG+VC A++ ++L + G++ YS+ S+
Sbjct: 334 EARKRGSTVYLPTGMVPMFPEILATGPMSLVQGQVCCALSFGIILDASGAVENYSIHASL 393
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+L L+++ E E+ ++ A R WR QGAI E IKV
Sbjct: 394 IKPTYRLTYEDVDEMLDLDVQAEPEIAAIARWANKRKAWRYAQGAISINMPEAMIKVK-- 451
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-F 418
E I +YV D + P+ +LV+EMMIL GE A YG + + LP+RGQPQ +
Sbjct: 452 ---EDDIKIYVLDDS-PSRQLVAEMMILAGEVAARYGQTHQIPLPFRGQPQPELPPEQEL 507
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 508 LQLPAGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T++V G + +
Sbjct: 1 MEKGTLVEFRLQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIVTG-QTYKSS 58
Query: 170 DISNFLQKAEDNL 182
I++FL++ + L
Sbjct: 59 QIASFLEEVKPYL 71
>gi|411119545|ref|ZP_11391925.1| exoribonuclease R [Oscillatoriales cyanobacterium JSC-12]
gi|410711408|gb|EKQ68915.1| exoribonuclease R [Oscillatoriales cyanobacterium JSC-12]
Length = 664
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/298 (46%), Positives = 187/298 (62%), Gaps = 8/298 (2%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D +NR DLTHLKVY ID + E+DD LS L DGR +++IH+ADP++++ PG D
Sbjct: 259 DDPDVNRVDLTHLKVYTIDDESTREIDDGLSLEFLPDGRQRLWIHIADPSRWVFPGDELD 318
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A +R T+++LPT PMFP +LA MSL QG VC A++ V+L G+I EYS+ S
Sbjct: 319 LEARRRSTTIYLPTGMIPMFPSELATGPMSLVQGRVCCALSFGVILDDTGAIEEYSIHAS 378
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TY LTYE E+L L ++ E+EL+ ++ A LR WR +QGAI + E+ IKV +
Sbjct: 379 HIKTTYRLTYEDVDEMLELGVQGESELEAIAHWANLRKDWRREQGAISISMPESSIKVQD 438
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
E I + V D + + +LV+EMMIL GE A YG +NL +P+R QPQ +
Sbjct: 439 DE-----ITIEVLDNS-VSRQLVAEMMILTGEVAARYGQEHNLPIPFRHQPQPELPPEEE 492
Query: 419 AHLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
L GPVRSSAI + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+
Sbjct: 493 LILLPAGPVRSSAIRRCMPRSEMSI-TPARHASLGLNTYTQITSPIRRYSDLLAHFQI 549
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ S R LAV +RP+GKK+W+ D+ G S ++ P+++ + V G E +
Sbjct: 1 MEKGSLVEFRMGSVR-RLAVVERPEGKKHWIAIDERGQSHTLHPREILYEVTG-EVYKPT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
I +FLQ+ + L D + L+V + I V++ + + A AM L
Sbjct: 59 QIKDFLQQVQPYL----DPSSLEVAWEILVEDGETVTPAEMAMLL 99
>gi|113477198|ref|YP_723259.1| exoribonuclease II [Trichodesmium erythraeum IMS101]
gi|110168246|gb|ABG52786.1| Exoribonuclease II [Trichodesmium erythraeum IMS101]
Length = 674
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/297 (45%), Positives = 186/297 (62%), Gaps = 6/297 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D NR DLTHLKVY ID + E+DD LS L+DG+ ++++H+ADPT+ + PG D
Sbjct: 260 DPETNRLDLTHLKVYTIDDESTQEIDDGLSIEFLEDGQHRIWVHIADPTRLLIPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +R T+++LPT PMFP +LA MSL QG+VC A++ ++L G++ +Y + S+
Sbjct: 320 EARRRTTTLYLPTGMVPMFPPELATGPMSLIQGQVCRALSFGILLDESGAVIDYIIHASL 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTY+ E+L L ++ E E+ L++ A R +WR QG+I E+ IKV
Sbjct: 380 IKPTYRLTYDDVDEMLQLKIKLEPEIHALNDWAKQRFKWRQSQGSISIYMPESVIKVKG- 438
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-F 418
+ E I ++D P+ +LV+EMMIL GE A YG NN+ LPYR QPQ + A
Sbjct: 439 -EGEEITVEVLDD--SPSRQLVAEMMILAGEVGAKYGQENNIPLPYRSQPQPELPPDAEL 495
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS+A+ + M + + P RH L L YVQ TSPIRRY DLLAH+Q+
Sbjct: 496 MLLPAGPVRSTAMRRCMPKSEMG-TIPARHASLALETYVQVTSPIRRYSDLLAHFQI 551
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA RPDGKKNW+V + NG S SI P+Q+++ V G E +
Sbjct: 1 MEKGKLIEFRLHGER-RLAVADRPDGKKNWVVIEANGKSNSIPPKQISYEVGG-ESYQSS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
+I F+Q+ + L D + L+V + + V+EA+ ++ A+ L
Sbjct: 59 EIPQFIQEVKTYL----DPSSLEVAWELLVEEAEAVNPEEMALLL 99
>gi|427729568|ref|YP_007075805.1| exoribonuclease R [Nostoc sp. PCC 7524]
gi|427365487|gb|AFY48208.1| exoribonuclease R [Nostoc sp. PCC 7524]
Length = 710
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 181/297 (60%), Gaps = 8/297 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D
Sbjct: 298 DSDTNRLDLTHLKVYTIDDESTTEIDDGLSWEILSDGRDRLWVHIADPTRWLAPEDDLDL 357
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG++V+LPT PMFPE LA MSL QG++C A++ ++L +DG++ ++++ S+
Sbjct: 358 EARKRGSTVYLPTGMVPMFPEVLATGPMSLVQGKICCALSFGIILDADGAVEDFTIHPSL 417
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+L L +E E E++ ++ A R WR QGAI E IKV +
Sbjct: 418 IKPTYRLTYEDVDEMLELGVEAEPEIEAIANWATKRKAWRYNQGAISINMPEAMIKVKD- 476
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAF 418
P+ +LV+EMMIL GE A YG +N+ LP+RGQPQ +
Sbjct: 477 -----DDISIDILDDSPSRQLVAEMMILAGEVAARYGQKHNIPLPFRGQPQPELPPEQEL 531
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 532 LQLPAGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 587
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 108 QVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFD 167
+V++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 23 RVVEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVIDERGQSHSLAPRQMTYTVNG-QTYK 80
Query: 168 HKDISNFLQKAEDNL 182
DI++FL++ + L
Sbjct: 81 PSDIASFLEQVKPYL 95
>gi|428218158|ref|YP_007102623.1| exoribonuclease II [Pseudanabaena sp. PCC 7367]
gi|427989940|gb|AFY70195.1| Exoribonuclease II [Pseudanabaena sp. PCC 7367]
Length = 679
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 184/293 (62%), Gaps = 7/293 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DLTHL VY ID + E+DD LS L DGR K++IH+ADPT+++EPG L D +A
Sbjct: 271 MARIDLTHLHVYTIDDESTTEIDDGLSVETLADGRHKLWIHIADPTRWLEPGDLLDLEAR 330
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTS++LPT PMFP LA MSL Q +VC+A++ +V L G+I ++ V S+IKP
Sbjct: 331 RRGTSLYLPTGMIPMFPPVLATGPMSLVQKQVCHALSFAVELDEAGAIVDFDVHTSLIKP 390
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
Y LTYE E+LHL +E+ +L +L++ A LR QWR QGAI+ ET ++V +P D
Sbjct: 391 NYRLTYEDTEEMLHLGVEQ--DLDLLAKYARLRNQWRRSQGAININLPETIVRV-DPNDT 447
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHL 421
+ + +E+ + +LV+EMMIL GE A + N++ +PYR Q Q ++ L
Sbjct: 448 DQLTLHLLENSF--SRQLVAEMMILAGEVGAKFAQQNSIPVPYRFQEQPDLPSEEVIVQL 505
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
P GPVR AI + M + P RH LGL YVQ TSPIRRY DLL H+Q
Sbjct: 506 PPGPVREFAICRRMTRGELSI-NPFRHAGLGLDAYVQVTSPIRRYSDLLTHFQ 557
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVV---PGVE-- 164
+ KG L+E K DR LAV +RP+GKK+ V D+NG + + P++V +VV P +
Sbjct: 1 MDKGTLVEVKLHGDR-RLAVVERPEGKKHIQVIDENGTAHVVHPREVEYVVKVDPESDSP 59
Query: 165 -KFDHKDISNFLQKAE 179
K+ + I F +AE
Sbjct: 60 VKYSSQKIPKFTAEAE 75
>gi|409990691|ref|ZP_11274032.1| ribonuclease II, partial [Arthrospira platensis str. Paraca]
gi|409938453|gb|EKN79776.1| ribonuclease II, partial [Arthrospira platensis str. Paraca]
Length = 472
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 185/292 (63%), Gaps = 8/292 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY ID + E+DD +S L+DG K++IH+ADPT+ I+PG D +A +R
Sbjct: 66 RFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLIQPGDELDLEARRR 125
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+LPT PMFP +LA MSL QG++C A++ VVL+ DGS+ +YS+ SIIKPTY
Sbjct: 126 TTSVYLPTGMIPMFPSELATGPMSLVQGKICCALSFGVVLNEDGSVKDYSIHTSIIKPTY 185
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ E+LHL ++ E E++IL + A LR QWR QGAI E+ IKV D +
Sbjct: 186 RLTYDDVDEMLHLGIKAEPEIEILGKFAKLRQQWRSSQGAISIYMPESMIKV----DGDE 241
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
+I ++D + ++V+EMMIL GE A YG +NLALPYR QPQ +
Sbjct: 242 VIVKLLDDSL--SRQMVAEMMILTGEVAARYGQEHNLALPYRSQPQPELPPEEELLQLPA 299
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + P RH L L Y Q TSPIRRY DLLAH+Q+
Sbjct: 300 GAVRACALRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLAHFQI 350
>gi|428211654|ref|YP_007084798.1| exoribonuclease R [Oscillatoria acuminata PCC 6304]
gi|428000035|gb|AFY80878.1| exoribonuclease R [Oscillatoria acuminata PCC 6304]
Length = 671
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 186/293 (63%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD +S L+DGR +++IH+ADPT+ + PG D +A +
Sbjct: 265 NRLDLTHLKVYTIDDESTLEIDDGVSLEYLEDGRQRLWIHIADPTRLLSPGDELDLEARR 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+V+LPT PMFP +LA MSL Q ++C A++ +V+L G++AEYS+ S IKPT
Sbjct: 325 RSTTVYLPTGMVPMFPHELATGPMSLVQSQLCAALSFAVILEESGAVAEYSIHVSTIKPT 384
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+L L L+ E E+ ++ + R WR+ QGAI + ++ IKV ++ E
Sbjct: 385 YRLTYDDVDEMLQLGLQAEPEISAIAAWSKRRHAWRVSQGAISISMPDSSIKV---DENE 441
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I +ED P+ +LV+EMMIL GE A Y +N+ +P+RGQPQ + +
Sbjct: 442 EITVQLLEDC--PSRQLVAEMMILAGELGARYAQTHNIPVPFRGQPQPELPPEEELLILP 499
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRSSAI + M + + P RH LGL Y+Q TSPIRRY DLLAH+Q+
Sbjct: 500 AGPVRSSAIRRCMPKSEM-ATTPSRHASLGLDAYIQVTSPIRRYSDLLAHFQI 551
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG LLE++ + DR LAVA RPDGKKNW+V D+NG + SI P+Q+ + + G +
Sbjct: 1 MEKGTLLEYRLNGDR-RLAVADRPDGKKNWVVVDENGQANSIPPRQIAYEIGG-GSYKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
DI NF ++ E L D L+V + I V+E +D AM L
Sbjct: 59 DIPNFRKEVEKYL----DPDSLEVAWEILVEENRGVDPGEMAMLL 99
>gi|291568149|dbj|BAI90421.1| ribonuclease II [Arthrospira platensis NIES-39]
Length = 673
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 185/292 (63%), Gaps = 8/292 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY ID + E+DD +S L+DG K++IH+ADPT+ I+PG D +A +R
Sbjct: 267 RFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLIQPGDELDLEARRR 326
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+LPT PMFP +LA MSL QG++C A++ VVL+ DGS+ +YS+ SIIKPTY
Sbjct: 327 TTSVYLPTGMIPMFPSELATGPMSLVQGKICCALSFGVVLNEDGSVKDYSIHTSIIKPTY 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ E+LHL ++ E E++IL + A LR QWR QGAI E+ IKV D +
Sbjct: 387 RLTYDDVDEMLHLGIKAEPEIEILGKFAKLRQQWRSSQGAISIYMPESMIKV----DGDE 442
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
+I ++D + ++V+EMMIL GE A YG +NLALPYR QPQ +
Sbjct: 443 VIVKLLDDSL--SRQMVAEMMILTGEVAARYGQEHNLALPYRSQPQPELPPEEELLQLPA 500
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + P RH L L Y Q TSPIRRY DLLAH+Q+
Sbjct: 501 GAVRACALRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLAHFQI 551
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
+++KG L+EF+ +R LAV RP+GKK+W++ D G S ++ P+Q+T+ V G +
Sbjct: 1 MVEKGTLVEFRIHGER-RLAVVARPEGKKHWILVDDQGNSHTVHPRQITYEVGGT-TYRP 58
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
DI +F ++ + L D L++ + I ++E + +D A+ L
Sbjct: 59 ADIPSFYEEIQPYL----DPASLEIAWEILIEEGETVDPTGMALLL 100
>gi|126660660|ref|ZP_01731761.1| ribonuclease II [Cyanothece sp. CCY0110]
gi|126618053|gb|EAZ88821.1| ribonuclease II [Cyanothece sp. CCY0110]
Length = 670
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/306 (44%), Positives = 186/306 (60%), Gaps = 8/306 (2%)
Query: 172 SNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
S++LQ D +R DLTHLKVY ID + E+DD LS L D R+K++IH+ADPT+
Sbjct: 249 SSYLQTLPPDADSDRLDLTHLKVYTIDDESTKEIDDGLSVEYLDDERVKLWIHIADPTRL 308
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PG D +A KR T+++LPT MFP +LA MSLRQGE+C A++ VVL S+G++
Sbjct: 309 VTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSLRQGELCAALSFGVVLDSEGAV 368
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
A++S+ S+IKPTY LTY E+L L + E+EL +L+EAA R +WR QG+I
Sbjct: 369 ADFSIHASVIKPTYRLTYHDVDEMLQLGITAESELAVLAEAAKKRHKWRQSQGSITIKMP 428
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E IKV + + + + +LV+EMMIL GE TY N + +P+RGQPQ
Sbjct: 429 EAIIKVKS-----EEEIIIELLETSISRQLVAEMMILAGEVAGTYCRENGIPVPFRGQPQ 483
Query: 411 SNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
+ LP GPVR+ A+ + M + + P RH LGL Y Q TSPIRRY DL
Sbjct: 484 PELPSDEELLLLPAGPVRACALRRCMPRSEMG-TLPSRHASLGLNNYTQVTSPIRRYTDL 542
Query: 470 LAHYQV 475
L H+Q+
Sbjct: 543 LTHFQL 548
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ + + L V RP+GKK+W+V D +G S ++PQ++ + VPG +
Sbjct: 1 MEKGKLVEFRVNGE-PRLGVVDRPEGKKDWIVIDNDGHSHKLRPQRIDYEVPG-GSYSSN 58
Query: 170 DISNFLQKAEDNL 182
DI FLQ+ +D L
Sbjct: 59 DIPQFLQEIQDYL 71
>gi|332712186|ref|ZP_08432114.1| exoribonuclease R [Moorea producens 3L]
gi|332348992|gb|EGJ28604.1| exoribonuclease R [Moorea producens 3L]
Length = 685
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 180/293 (61%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLK+Y ID + E+DD LS L+DG +++IH+ADPT+ + PG D +A +
Sbjct: 261 DRLDLTHLKLYTIDDESTQEIDDGLSIEDLEDGTQRLWIHIADPTRLVMPGDNLDLEARR 320
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG+VC A++ V+L DG+I +Y + S+IKPT
Sbjct: 321 RSTTIYLPTGMIPMFPSELATGPMSLVQGQVCGALSFGVILDQDGAIYDYQIHPSLIKPT 380
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL ++ A R +WR QGAI E+ IKV N D +
Sbjct: 381 YRLTYEDVDEMLQLGVQAETELFAIANLAVRRQKWRKSQGAISIHMPESVIKVGN--DDQ 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
I + +ED P+ ++V+EMMIL GE YG + + LP+RGQPQ + LP
Sbjct: 439 ITIEV-LED--SPSRQMVAEMMILAGEVAGRYGQAHQIPLPFRGQPQPELPSQEELLLLP 495
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P RH L L Y Q TSPIRRY DL+ H+Q+
Sbjct: 496 AGPVRFCAMRRCMPRSEMSI-TPTRHASLALETYTQVTSPIRRYTDLMTHFQL 547
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RP+GK + + DQ G + P+QVT+ V ++
Sbjct: 1 MEKGTLIEFRLQGER-HLAVVDRPEGKNHLIALDQRGKLHKLHPRQVTYTV-ADSTYEPS 58
Query: 170 DISNFLQKAEDNL 182
I F+ + + L
Sbjct: 59 QIPEFIARVQPYL 71
>gi|428317148|ref|YP_007115030.1| Exoribonuclease II [Oscillatoria nigro-viridis PCC 7112]
gi|428240828|gb|AFZ06614.1| Exoribonuclease II [Oscillatoria nigro-viridis PCC 7112]
Length = 668
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/298 (46%), Positives = 185/298 (62%), Gaps = 10/298 (3%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L++G+ +++IH+ADPT+ + PG D
Sbjct: 260 DSDTNRLDLTHLKVYTIDDESTTEIDDGLSLEFLENGQQRIWIHIADPTRLLSPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR T+V+LPT PMFP LA MSL QG+ C+A++ SV L G+ +YS+ S
Sbjct: 320 EARKRTTTVYLPTGMIPMFPPALATGPMSLIQGKECSALSFSVTLDETGAAQDYSIHIST 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTY+ E+L L +E E E+ ++ AA LR +WR QGAI E+ IKV N
Sbjct: 380 IKPTYRLTYDDVDEMLELGIEAEPEIAAIASAAKLRQKWREAQGAISIFMPESVIKV-NG 438
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--DVSA 417
+D I +YV D + M LV+EMMIL GE A YG ++L +PYR QPQ + D
Sbjct: 439 DD----IKIYVIDDSTARM-LVAEMMILAGELAARYGQAHSLPIPYRYQPQPELPPDEEL 493
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A +P GP R+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 494 LA-VPAGPARACAVRRCMPRSEMGL-TPGRHAGLGLELYTQVTSPIRRYTDLLTHFQI 549
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LAVA RPDGKKNW+V D+NG SI P+Q+T+ V G E +
Sbjct: 1 MEKGTLVEFRVHGDR-RLAVADRPDGKKNWVVVDENGQPHSIPPKQITYEVVG-ETYKPS 58
Query: 170 DISNFLQKAE 179
DI FL++ E
Sbjct: 59 DIPKFLKEVE 68
>gi|254423969|ref|ZP_05037687.1| RNB-like protein [Synechococcus sp. PCC 7335]
gi|196191458|gb|EDX86422.1| RNB-like protein [Synechococcus sp. PCC 7335]
Length = 681
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 185/293 (63%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD LS L DGR K++IH+ADPT +I + D +A +
Sbjct: 263 DRVDLTHLKVYTIDDESTQEIDDGLSCETLADGRQKLWIHIADPTYWISLNGILDTEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+V+LPT PMFP +LA MSL QG++CNA++ SV+L DGS+AEYS+ S++KPT
Sbjct: 323 RCTTVYLPTGVIPMFPFELAAGPMSLVQGQICNALSFSVLLAEDGSVAEYSIQPSVVKPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ A E++ L ++ E+EL L + A RL WR QGAID E+ IKV +
Sbjct: 383 YRLTYDDADEMIELGVQAESELLALFDHAKQRLSWRKSQGAIDIQLPESVIKVDD----- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HLP 422
+I + + + ++ + +V+EMMIL GE A YG N + LP+R QPQ + L
Sbjct: 438 DVITIDILESSN-SREMVAEMMILTGEIAARYGEDNKIPLPFRAQPQPELPPEEELMQLE 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR SAI + M + ++ P RH LGL Y Q TSPIRRY DL+ H+Q+
Sbjct: 497 AGWVRDSAIRRCMTRSEMNI-TPARHATLGLDRYCQVTSPIRRYTDLMGHFQI 548
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK LAVA RP+GKKNW++ DQ G S +I P+Q+ + V ++
Sbjct: 1 MEKGTLIEFKLKGS-PYLAVADRPEGKKNWVLVDQAGQSHTIHPRQIIYEVSDA-SYEPT 58
Query: 170 DISNFLQKAE-----DNL 182
+I F +A+ DNL
Sbjct: 59 EIEEFTTEAQSYIDPDNL 76
>gi|170077199|ref|YP_001733837.1| ribonuclease II [Synechococcus sp. PCC 7002]
gi|169884868|gb|ACA98581.1| ribonuclease II [Synechococcus sp. PCC 7002]
Length = 670
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/294 (45%), Positives = 184/294 (62%), Gaps = 10/294 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLK Y ID + E+DD LS L+DG KV+IH+ADPT+ + PG D +A +
Sbjct: 263 NRLDLTHLKTYTIDDESTSEIDDGLSIETLEDGLHKVWIHIADPTRLLSPGDELDLEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFPE+LA MSLRQG+VC A++ V+L +G+IA+Y + S +KPT
Sbjct: 323 RSTSLYLPTGMISMFPEELATGPMSLRQGQVCAALSFGVLLTENGAIADYEITPSWVKPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL ++ E+E+ +L++ A R +WR QG+I E IKV +
Sbjct: 383 YRLTYDDVDEMLHLRIQAESEIALLADFAHKRRKWRDAQGSISIKMPEASIKVQDE---- 438
Query: 364 PIINLYVED-QADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
N+++E A + LV+EMMIL GE YG + L LP+RGQPQ + L
Sbjct: 439 ---NIFIEVLHASMSRELVAEMMILAGEVAGHYGRTHGLPLPFRGQPQPELPPQEELLLL 495
Query: 423 E-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ A+ + M + + PVRH LGL Y+Q TSPIRRY DLLAH+Q+
Sbjct: 496 PAGPVRACAVRRCMPRSEMG-TNPVRHASLGLDSYIQVTSPIRRYTDLLAHFQI 548
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 7/78 (8%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +RVL AVA+RP+GKK+W+V D G S ++PQ+V + V G +D
Sbjct: 1 MEKGQLIEFRLQGERVL-AVAERPEGKKDWIVIDGRGQSHKLRPQRVEYTVAG-SPYDPT 58
Query: 170 DISNFLQKAE-----DNL 182
+I +F +++ DNL
Sbjct: 59 EIPSFFTESQALVDPDNL 76
>gi|427723549|ref|YP_007070826.1| exoribonuclease II [Leptolyngbya sp. PCC 7376]
gi|427355269|gb|AFY37992.1| Exoribonuclease II [Leptolyngbya sp. PCC 7376]
Length = 670
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 180/293 (61%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL+HLK Y ID + E+DD LS L DG KV+IH+ADPT+ + P D +A +
Sbjct: 263 HRLDLSHLKTYTIDDESTSEIDDGLSVEALPDGGHKVWIHIADPTRLLSPNDDLDLEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+VC A++ V+L +G+IA+YS+ S +KPT
Sbjct: 323 RSTSLYLPTGMISMFPVELATGPMSLIQGQVCAALSFGVLLTEEGAIADYSIHPSWVKPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL ++ E E+ +L++ + R WR QG+I E IKV +D +
Sbjct: 383 YRLTYDDVDEMLHLGIQAEPEIALLADFSKQRAAWRNSQGSIKIKMPEASIKV---KDED 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
I + +A + LV+EMMIL GE YG +NL LP+RGQPQ + LP
Sbjct: 440 VTIEVL---EASISRELVAEMMILAGEVAGKYGVEHNLPLPFRGQPQPELPSDQELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ A+ + M + PVRH LGL Y+Q TSPIRRY DLLAH+Q+
Sbjct: 497 AGPVRACAVRRCMPRGEMG-TNPVRHASLGLDSYIQVTSPIRRYTDLLAHFQI 548
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+++G L+EF+ +R LLAVA+RP+GKK+W+V D G S ++PQ+V + V G +
Sbjct: 1 MEQGQLIEFRLQGER-LLAVAERPEGKKDWIVVDAKGQSHKLRPQRVEYTVAG-SPYLST 58
Query: 170 DISNFLQKAEDNL 182
DI FL+ E L
Sbjct: 59 DIPAFLKVCESFL 71
>gi|209528143|ref|ZP_03276617.1| Exoribonuclease II [Arthrospira maxima CS-328]
gi|376007620|ref|ZP_09784813.1| Exoribonuclease II [Arthrospira sp. PCC 8005]
gi|423063139|ref|ZP_17051929.1| ribonuclease II [Arthrospira platensis C1]
gi|209491431|gb|EDZ91812.1| Exoribonuclease II [Arthrospira maxima CS-328]
gi|375324020|emb|CCE20566.1| Exoribonuclease II [Arthrospira sp. PCC 8005]
gi|406715261|gb|EKD10417.1| ribonuclease II [Arthrospira platensis C1]
Length = 672
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 185/293 (63%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + E+DD +S L+DG K++IH+ADPT+ I PG D +A +
Sbjct: 265 HRFDLTHLKVYTIDDESTREIDDGVSLEFLEDGTQKIWIHIADPTRLITPGDELDLEARR 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+LPT PMFP +LA MSL QG++C A++ VVL+ DGS+ +YS+ SIIKPT
Sbjct: 325 RTTSVYLPTGMIPMFPPELATGPMSLVQGKICCALSFGVVLNEDGSLKDYSIHTSIIKPT 384
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL ++ E E++IL + A R QWR QGAI E+ IKV E E
Sbjct: 385 YRLTYDDVDEMLHLGIKAEPEIEILGQLAKRRQQWRSSQGAISIYMPESMIKV---EGDE 441
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I+ L ++D + ++V+EMMIL GE A YG +NLALPYR QPQ +
Sbjct: 442 VIVKL-LDDSL--SRQMVAEMMILTGEVAARYGQEHNLALPYRSQPQPELPPEEELLQLP 498
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + P RH L L Y Q TSPIRRY DLLAH+Q+
Sbjct: 499 AGAVRACALRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLAHFQI 550
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RP+GKK+W++ D G S ++ P+Q+T+ V G +
Sbjct: 1 MEKGTLVEFRHHGER-RLAVVDRPEGKKHWILVDDQGNSHTVHPRQITYEVGGT-TYRPA 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
DI +F ++ + L D L++ + I ++E + +D A+ L
Sbjct: 59 DIPSFYEEIQPYL----DPASLEIAWEILIEEGETVDPKGMALLL 99
>gi|443317238|ref|ZP_21046654.1| exoribonuclease R [Leptolyngbya sp. PCC 6406]
gi|442783123|gb|ELR93047.1| exoribonuclease R [Leptolyngbya sp. PCC 6406]
Length = 676
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 183/293 (62%), Gaps = 6/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHLKVY +D E+DD +S L+DGR ++++H+ADPT+++ PG D DA +
Sbjct: 266 QRLDLTHLKVYTVDDASTREIDDGVSLETLEDGRQRLWVHIADPTRWVFPGDTLDLDARR 325
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QGEVC A++ ++L + G + Y + S I+PT
Sbjct: 326 RSTTLYLPTGMIPMFPLELATGPMSLIQGEVCCALSFGIILTAAGDVESYRIAPSHIRPT 385
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E+EL ++E + +R QWR QGAI E+ I+V+ ED
Sbjct: 386 YRLTYEDVDEMLDLGVQAESELLAIAEWSQVRQQWRSTQGAIAIHMPESSIRVSEQEDDI 445
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HLP 422
I L ED PA ++V+EMMIL GE A YG ++LA+P+R QPQ + LP
Sbjct: 446 DIQLL--ED--SPARQMVAEMMILTGEVAARYGQEHDLAIPFRSQPQPELPPEEELMQLP 501
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GP R SAI + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+
Sbjct: 502 SGPARYSAIRRCMSRSEMGL-TPARHATLGLASYSQVTSPIRRYTDLLAHFQI 553
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 110 LQKGLLLEFK-KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGV 163
+++G L+EF+ + + R L V +RP+GKKNW+ D+ G S + P+ +TF V G
Sbjct: 1 MERGTLVEFRVQGTPR--LGVLERPEGKKNWVAVDERGQSHVLHPRDITFQVAGA 53
>gi|428223314|ref|YP_007107484.1| exoribonuclease R [Synechococcus sp. PCC 7502]
gi|427996654|gb|AFY75349.1| exoribonuclease R [Synechococcus sp. PCC 7502]
Length = 669
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/300 (44%), Positives = 186/300 (62%), Gaps = 7/300 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++R DLTHL VY ID + E+DD LS L +G+ +++IH+ADPT+++EP + D++A
Sbjct: 261 MHRLDLTHLHVYTIDDESTTEIDDGLSIETLPNGKQRLWIHIADPTRWMEPNDILDREAR 320
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRGT+++LPT PMFP LA MSL Q ++C+A++ +V L G + Y + S+IKP
Sbjct: 321 KRGTTIYLPTGMIPMFPPALATGEMSLVQRQICHALSFAVELSDQGEVEYYEIHASLIKP 380
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
+Y LTYE E+L L + EA+L+ ++ A LR WRL QGAI+ E IK ANP D
Sbjct: 381 SYRLTYEDVQEMLALGV--EADLEAIAHHARLRASWRLNQGAININLPEAIIK-ANPHDN 437
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHL 421
+ +++ V D + A +LV+EMMIL GE A Y +N+ +PYR Q Q + L
Sbjct: 438 DQ-LDIEVIDNSF-ARKLVAEMMILTGEVAAKYAQTHNIPVPYRFQGQPELPTEETLQTL 495
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
P GPVR A+V+ M+ + P RH LGL YVQ TSPIRRY DLL H+Q+ A
Sbjct: 496 PPGPVREFAMVRCMQKGEVGV-IPSRHAGLGLDAYVQVTSPIRRYGDLLIHFQIKAHVAG 554
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 115 LLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVE---KFDHKDI 171
++EF+ DR LAV RP+GKK+ V D+NG + P+Q+ FV+ +F K I
Sbjct: 1 MVEFRLHGDR-RLAVVDRPEGKKHLQVIDENGTPHILHPRQIDFVITSSTESPRFTVKQI 59
Query: 172 SNFLQKAEDNL 182
F Q+ ++ L
Sbjct: 60 QTFFQQVQEFL 70
>gi|425435093|ref|ZP_18815553.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389675171|emb|CCH95667.1| putative enzyme [Microcystis aeruginosa PCC 9432]
Length = 671
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVRPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFLQ+ + L
Sbjct: 59 EIGNFLQEVQPYL 71
>gi|17231942|ref|NP_488490.1| ribonuclease II [Nostoc sp. PCC 7120]
gi|17133586|dbj|BAB76149.1| ribonuclease II [Nostoc sp. PCC 7120]
Length = 686
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 174/293 (59%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY +D + E+DD LS +L D R ++++H+ADPT+Y+ P D +A K
Sbjct: 278 NRLDLTHLKVYTVDDESTTEIDDGLSWEKLPDDRERLWVHIADPTRYLAPEDDLDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG VC A++ VVL G++ ++++ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGRVCCALSFGVVLDGTGAVQDFTIHPSLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A R WR QGAI E IKV N
Sbjct: 398 YRLTYEDVDEMLELGVQAEPEIAAIATWATKRKSWRYNQGAISINMPEAMIKVKN----- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ +LV+EMMIL GE A YG +N+ LP+RGQPQ + LP
Sbjct: 453 -DDISIDILDDSRSRQLVAEMMILAGEVAARYGQVHNIPLPFRGQPQPELPPEDELLRLP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-NTYKPS 58
Query: 170 DISNFLQKAEDNL 182
+I FL++ + L
Sbjct: 59 EIDRFLEEVKPYL 71
>gi|75907545|ref|YP_321841.1| ribonuclease II [Anabaena variabilis ATCC 29413]
gi|75701270|gb|ABA20946.1| Ribonuclease II [Anabaena variabilis ATCC 29413]
Length = 686
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 174/293 (59%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY +D + E+DD LS +L D R ++++H+ADPT+Y+ P D +A K
Sbjct: 278 NRLDLTHLKVYTVDDESTTEIDDGLSWEKLPDSRERLWVHIADPTRYLAPEDDLDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG VC A++ VVL G++ ++++ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEILATGPMSLVQGRVCCALSFGVVLDETGAVEDFTIHPSLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A R WR QGAI E IKV N
Sbjct: 398 YRLTYEDVDEMLELGVQAEPEIAAIATWATKRKSWRYNQGAISINMPEAMIKVKN----- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ +LV+EMMIL GE A YG +N+ LP+RGQPQ + LP
Sbjct: 453 -DDISIDILDDSRSRQLVAEMMILAGEVAARYGQVHNIPLPFRGQPQPELPPEDELLRLP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-NTYKPS 58
Query: 170 DISNFLQKAEDNL 182
DI FL++ + L
Sbjct: 59 DIDRFLEEVKPYL 71
>gi|425458520|ref|ZP_18838008.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389827397|emb|CCI21362.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 671
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVRPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|434407914|ref|YP_007150799.1| exoribonuclease R [Cylindrospermum stagnale PCC 7417]
gi|428262169|gb|AFZ28119.1| exoribonuclease R [Cylindrospermum stagnale PCC 7417]
Length = 686
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 182/293 (62%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D +A K
Sbjct: 278 NRLDLTHLKVYTIDDESTTEIDDGLSWELLSDGRQRLWVHIADPTRWLVPEDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG + A++ +VL + G++A+YS+ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGRISCALSFGIVLETTGAVADYSIHPSLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E++ ++ A R WR QGAI E IKV + E
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIEAIANWAKQRKSWRYHQGAISINMPEAMIKVKDGE--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I++ + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 --ISIDILDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPDEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLATYTQATSPIRRYSDLLTHFQL 563
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-QTYKPS 58
Query: 170 DISNFLQKAEDNL 182
+I++FLQ+ + L
Sbjct: 59 EIASFLQQVQPYL 71
>gi|425471402|ref|ZP_18850262.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389882731|emb|CCI36838.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 671
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 185/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425452115|ref|ZP_18831933.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|389766224|emb|CCI08082.1| putative enzyme [Microcystis aeruginosa PCC 7941]
Length = 671
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVRPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I+NFL++ + L
Sbjct: 59 EIANFLREVQPYL 71
>gi|434389380|ref|YP_007099991.1| exoribonuclease R [Chamaesiphon minutus PCC 6605]
gi|428020370|gb|AFY96464.1| exoribonuclease R [Chamaesiphon minutus PCC 6605]
Length = 672
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/292 (46%), Positives = 184/292 (63%), Gaps = 8/292 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHLKVY ID + E+DD LS L DGR K++IH+ADPT+ + P D +A KR
Sbjct: 266 RRDLTHLKVYTIDDESTQEIDDGLSVETLPDGRQKLWIHIADPTRLLSPDDEFDLEARKR 325
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+++LPT PMFP +LA MSLRQG+ C A++ V+L G+ +EY + S I+PTY
Sbjct: 326 SVTIYLPTGMIPMFPPELATGPMSLRQGQKCCALSFGVILDESGAASEYEITTSTIEPTY 385
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE E+L L + E E++ +++AA LR QWRL QG+I+ E+ +KV+ +
Sbjct: 386 RLTYEDVEEMLQLRIPGENEIEAIAKAAKLRNQWRLSQGSININMPESTVKVSGDKVS-- 443
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
I+L +ED + A RLV+EMMIL GE A YG N+L LPYRGQPQ + L
Sbjct: 444 -IDL-IED--NRARRLVAEMMILAGEVAAKYGQDNSLPLPYRGQPQPELPPEEELILIPV 499
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GP RS A+ + M + + P RH LGL Y Q TSPIRRY DLL+H+Q+
Sbjct: 500 GPARSCAVRRCMPRSEM-ATTPSRHASLGLNTYSQVTSPIRRYTDLLSHFQI 550
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF + +R LA+A RP+GKK+W+ D S ++ P+ +T+ V G+
Sbjct: 1 MEKGTLVEFWHNGER-RLAIADRPEGKKHWIAIDARSQSHTLHPRDITYEVAGISCKQPA 59
Query: 170 DISNFLQKAEDNL 182
+I+ F + N+
Sbjct: 60 EINKFTTEVAPNV 72
>gi|425441239|ref|ZP_18821520.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389718110|emb|CCH97886.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 671
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 185/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|147810722|emb|CAN71797.1| hypothetical protein VITISV_026278 [Vitis vinifera]
Length = 754
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 148/184 (80%), Gaps = 6/184 (3%)
Query: 2 MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQFLNR 61
MAVRAVN+CS+FRS + PPL F+ C +HF + Q + + NLG P CR++R FL+
Sbjct: 351 MAVRAVNTCSIFRSTSSPPLYPFR--CRLHHFGAFQCK-SYPNLGLHFPICRTDRXFLSH 407
Query: 62 SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV---SSGELLEDKLENQVLQKGLLLEF 118
G QSCSV+SLV+SVM+EL A RKR R++A K+ SSG+LLEDKL+NQVLQKGLLLEF
Sbjct: 408 GGVQSCSVYSLVESVMEELHASRKRKRIYASTKMGLTSSGQLLEDKLKNQVLQKGLLLEF 467
Query: 119 KKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKA 178
+KDS+RVLLAVAQ+ DGKKNWMV+DQNG + SIKPQQVT++VPG++ FD +ISNF+QKA
Sbjct: 468 RKDSERVLLAVAQKADGKKNWMVFDQNGVTSSIKPQQVTYIVPGIDNFDQTEISNFIQKA 527
Query: 179 EDNL 182
+DNL
Sbjct: 528 QDNL 531
>gi|425455257|ref|ZP_18834977.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389803880|emb|CCI17236.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 672
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/300 (44%), Positives = 186/300 (62%), Gaps = 9/300 (3%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVHPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV- 356
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV- 415
AN E I + ++ + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 ANDE-----ITIELQ-EVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPD 490
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 491 EELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-HLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425443645|ref|ZP_18823717.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389734195|emb|CCI02125.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 671
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/300 (44%), Positives = 186/300 (62%), Gaps = 9/300 (3%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVHPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV- 356
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV- 415
AN E I + ++ + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 ANDE-----ITIELQ-EVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPD 490
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 491 EELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|440755588|ref|ZP_20934790.1| RNB domain protein [Microcystis aeruginosa TAIHU98]
gi|440175794|gb|ELP55163.1| RNB domain protein [Microcystis aeruginosa TAIHU98]
Length = 671
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 184/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ +HK
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NHK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|166367429|ref|YP_001659702.1| ribonuclease II [Microcystis aeruginosa NIES-843]
gi|166089802|dbj|BAG04510.1| ribonuclease II [Microcystis aeruginosa NIES-843]
Length = 671
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 185/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I+NFL++ + L
Sbjct: 59 EIANFLREVQPYL 71
>gi|284929340|ref|YP_003421862.1| exoribonuclease R [cyanobacterium UCYN-A]
gi|284809784|gb|ADB95481.1| exoribonuclease R [cyanobacterium UCYN-A]
Length = 671
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/292 (45%), Positives = 180/292 (61%), Gaps = 7/292 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY ID + +E+DD LS L++ IK++IH+ADPT I PG D +A KR
Sbjct: 263 RIDLTHLKVYTIDDESTEEIDDGLSVEVLENNIIKLWIHIADPTYLISPGDELDLEARKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+++LPT T MFP +LA MSLRQG++C +++ V+L +G++ +YS++ S IKPTY
Sbjct: 323 STTLYLPTGTISMFPTELATGPMSLRQGQLCPSLSFGVILDENGAVLDYSINTSFIKPTY 382
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY E+L L + E EL IL++A+ R WR QG+I E IKV + ED E
Sbjct: 383 RLTYNDVNEILQLGITAEPELAILAKASKQRYCWRKSQGSITIKMPEASIKVKS-ED-EI 440
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE- 423
II+L + + +LV+EMMIL GE Y NN+ +P+RGQPQ + L
Sbjct: 441 IIDLL---ETSVSRQLVAEMMILAGEVAGDYCKKNNIPVPFRGQPQPELPSEEELLLLPA 497
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRS A+ + M + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 498 GPVRSCALRRCMPKGEMA-TIPYRHSSLGLDYYTQVTSPIRRYTDLLTHFQI 548
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPG 162
++KG L+EF+ + +R LAV RP+GKK+W+V D G+S ++ Q++ + V G
Sbjct: 1 MEKGKLIEFRINGER-RLAVVDRPEGKKDWIVIDSEGSSYKLRQQKIEYEVIG 52
>gi|159030380|emb|CAO91275.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 671
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|427705694|ref|YP_007048071.1| exoribonuclease II [Nostoc sp. PCC 7107]
gi|427358199|gb|AFY40921.1| Exoribonuclease II [Nostoc sp. PCC 7107]
Length = 686
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 184/294 (62%), Gaps = 8/294 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++EP D +A
Sbjct: 277 VNRLDLTHLKVYTIDDESTTEIDDGLSWESLNDGRERLWVHIADPTRWLEPEDDLDLEAR 336
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG++V+LPT PMFPE LA MSL QG +C A++ ++L S G++ +YS+ S+IKP
Sbjct: 337 KRGSTVYLPTGMVPMFPEILATGPMSLVQGRICCALSFGIILDSTGAVEDYSIHASLIKP 396
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E++ + ++ E E++ ++ A R WR QGAI E IKV E
Sbjct: 397 TYRLTYEDVDEMVQIGVQAEPEIEAIANWAKKRKSWRYNQGAISINMPEAMIKVKGDE-- 454
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA-HL 421
I++ + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 ---ISIDILDDSS-SRQLVAEMMILAGEVAARYGKTHNIPLPFRGQPQPELPPEEELIQL 510
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P G VR+ A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 511 PAGFVRACAMRRCMPKSEMSI-TPLRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-QTYKSS 58
Query: 170 DISNFLQKAEDNL 182
+I+ FL++ + L
Sbjct: 59 EIAKFLEEVKPYL 71
>gi|443668240|ref|ZP_21134141.1| RNB domain protein [Microcystis aeruginosa DIANCHI905]
gi|443330838|gb|ELS45527.1| RNB domain protein [Microcystis aeruginosa DIANCHI905]
Length = 661
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/299 (44%), Positives = 184/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 247 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 306
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 307 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 366
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E+KIL+ A R WR QG+I+ E+ IKV
Sbjct: 367 STIKPTYRLTYEDVDEMLHLDLQHEPEVKILNRWAKQRHAWRKSQGSINIQMPESSIKVK 426
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 427 A--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 481
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 482 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 539
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 127 LAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNL 182
L V RP+GKK+W+V DQ G ++PQ+ +++ G ++K+I NFL++ + L
Sbjct: 7 LGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIIKGGPS-NYKEIGNFLREVQPYL 61
>gi|334116976|ref|ZP_08491068.1| Exoribonuclease II [Microcoleus vaginatus FGP-2]
gi|333461796|gb|EGK90401.1| Exoribonuclease II [Microcoleus vaginatus FGP-2]
Length = 668
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 184/298 (61%), Gaps = 10/298 (3%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L++G+ +++IH+ADPT+ + PG D
Sbjct: 260 DSDTNRLDLTHLKVYTIDDESTTEIDDGLSLEFLENGQQRLWIHIADPTRLLSPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR T+V+LPT PMFP LA MSL QG+ C+A++ SV L G+ +YS+ S
Sbjct: 320 EARKRTTTVYLPTGMIPMFPPALATGPMSLIQGKECSALSFSVTLDEIGAAQDYSIHIST 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTY+ E+L L +E E E+ ++ AA LR +WR QGAI E+ IKV N
Sbjct: 380 IKPTYRLTYDDVDEMLELGIEAEPEIAAIASAAKLRQKWREAQGAISIFMPESVIKV-NG 438
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--DVSA 417
+D I ++V D + M LV+EMMIL GE YG ++L +PYR QPQ + D
Sbjct: 439 DD----IKIHVIDDSTARM-LVAEMMILAGELAGRYGQAHSLPIPYRYQPQPELPPDEEL 493
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A +P GP R+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 494 LA-VPAGPARACAVRRCMPRSEMGL-TPGRHAGLGLELYTQVTSPIRRYTDLLTHFQI 549
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LAVA RPDGKKNW+V D+NG SI P+Q+T+ V G E +
Sbjct: 1 MEKGTLVEFRVHGDR-RLAVADRPDGKKNWVVVDENGQPHSIPPKQITYEVVG-ETYKPS 58
Query: 170 DISNFLQKAE 179
DI FL++ E
Sbjct: 59 DIPKFLKEVE 68
>gi|422304064|ref|ZP_16391413.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389790907|emb|CCI13274.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 671
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 185/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVLPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIHP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ +++ G +++
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYLIKGGPS-NYR 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|425463601|ref|ZP_18842931.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389831043|emb|CCI26535.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 671
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 185/305 (60%), Gaps = 8/305 (2%)
Query: 173 NFLQKAED-NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
N L D ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ +
Sbjct: 251 NLLNPPADVDVNNRLDLTHQKIYTIDDESTEEIDDGLSVEMLADGGHRLWIHIADPSRLV 310
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
P D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA
Sbjct: 311 LPDDELDLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIA 370
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
+Y + S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E
Sbjct: 371 DYRIHPSTIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPE 430
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
+ IKV + E II L + P+ +LV+EMMIL GE Y + + +P+RGQPQ
Sbjct: 431 SSIKVKA--NDEIIIEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQP 485
Query: 412 NIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL
Sbjct: 486 ELPPDEELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLL 544
Query: 471 AHYQV 475
H+Q+
Sbjct: 545 THFQL 549
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V P+GKK+W+V DQ G ++PQ+ +++ +HK
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDHPEGKKDWIVIDQGGNPHKLRPQRFDYIIKAGPS-NHK 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|443475455|ref|ZP_21065404.1| Exoribonuclease II [Pseudanabaena biceps PCC 7429]
gi|443019698|gb|ELS33751.1| Exoribonuclease II [Pseudanabaena biceps PCC 7429]
Length = 693
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/298 (44%), Positives = 187/298 (62%), Gaps = 8/298 (2%)
Query: 180 DNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
DN+ + R+DLTHL VY ID E+DD LS L DG +++IH+ADPT++++P S D
Sbjct: 264 DNMQDLRRDLTHLHVYTIDDISTTEIDDGLSIETLSDGGKRIWIHIADPTRWLDPDSPLD 323
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
KDA KRGTSV+LPT PMFP +LA MSL + +VC+A++ +V L G+++ Y + S
Sbjct: 324 KDARKRGTSVYLPTGVIPMFPIELAAGPMSLIENKVCHALSFAVDLDRVGAVSHYEIVAS 383
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
++KP Y LTYE E+L L +E+ +L L++ A LR +WR++QGAI+ +T +KV N
Sbjct: 384 LVKPNYRLTYEDVEEMLQLGVED--DLDRLADFARLRKKWRVEQGAIEIHLPDTTVKV-N 440
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSA 417
+ + + +ED + +LV+EMMIL GE A + NN+ +PYR Q Q + +
Sbjct: 441 SQSGDGLTLELMEDTF--SRQLVAEMMILAGEVAAKFAQANNIPIPYRYQEQPELPPLDT 498
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVR AI + M ++ RH LGL Y Q TSPIRRY DLLAH+Q+
Sbjct: 499 LMQLPSGPVREFAICRCMTKGSLGLYAS-RHSGLGLDAYAQVTSPIRRYSDLLAHWQI 555
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPG---VEKF 166
++KG L+E K DR L+ V RP+GKK++ D+NG S +I P+++ + + F
Sbjct: 1 MEKGTLIEVKLHGDRRLV-VIDRPEGKKHFQAIDENGNSHTIHPREINYTIKANGESSSF 59
Query: 167 DHKDISNFLQKAE 179
+ I +FLQK E
Sbjct: 60 TYTQIPSFLQKVE 72
>gi|218438216|ref|YP_002376545.1| exoribonuclease II [Cyanothece sp. PCC 7424]
gi|218170944|gb|ACK69677.1| Exoribonuclease II [Cyanothece sp. PCC 7424]
Length = 676
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 186/292 (63%), Gaps = 7/292 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK+Y ID + E+DD LS +L++G +++IH+ADP++ + PG D +A KR
Sbjct: 268 RLDLTHLKIYTIDDESTKEIDDGLSVEQLENGTTRLWIHIADPSRLVSPGDELDLEARKR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TS++LPT MFP +LA MSL QG++C A++ V+L DGS+ +Y + S++KPTY
Sbjct: 328 STSLYLPTGMISMFPPELATGPMSLVQGQICPALSFGVILKEDGSVEDYIIHASLVKPTY 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ E+L L+++ E E+KIL+++AA RL+WR QG+I+ + E IKV E+ E
Sbjct: 388 RLTYDDVDEILQLDIKAEPEVKILADSAARRLEWRKSQGSINISMPEAVIKVK--ENDEI 445
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH-LPE 423
II L + + +LV+EMMIL GE Y + L +P+RGQPQ + LP
Sbjct: 446 IIELL---ETSRSRQLVAEMMILAGEVAGHYCQHHELPVPFRGQPQPELPPEEELIVLPA 502
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 503 GPVRSCALRRCMPRSELG-TSPSRHASLGLDVYTQVTSPIRRYTDLLTHFQL 553
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 105 LENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVE 164
+E L KG L+EF+ DR LAV RP+GKK+W+V D+ G + I+PQ+V F V G
Sbjct: 1 MEKGTLSKGKLIEFRLQGDR-RLAVVDRPEGKKDWIVIDEGGQAHKIRPQRVEFEVSG-G 58
Query: 165 KFDHKDISNFLQKAE 179
+ H+DI NFL++ +
Sbjct: 59 PYTHQDIPNFLKQVQ 73
>gi|390439312|ref|ZP_10227718.1| putative enzyme [Microcystis sp. T1-4]
gi|389837295|emb|CCI31842.1| putative enzyme [Microcystis sp. T1-4]
Length = 671
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 185/299 (61%), Gaps = 7/299 (2%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A+ ++ NR DLTH K+Y ID + +E+DD LS L DG +++IH+ADP++ + P
Sbjct: 257 ADADVNNRLDLTHQKIYTIDDESTEEIDDGLSVEILADGGHRLWIHIADPSRLVCPDDEL 316
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++LPT PMFP +LA MSL QG++C A++ V+L G+IA+Y +
Sbjct: 317 DLEARRRSTSLYLPTGMVPMFPLELAAGPMSLVQGKLCPALSFGVILDETGAIADYRIYP 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S IKPTY LTYE E+LHL+L+ E E++IL+ A R WR QG+I+ E+ IKV
Sbjct: 377 STIKPTYRLTYEDVDEMLHLDLQHEPEVRILNRWAKQRHAWRKSQGSINIQMPESSIKVK 436
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-S 416
+ + E I+ L + P+ +LV+EMMIL GE Y + + +P+RGQPQ +
Sbjct: 437 D--NDEIIVEL---QEVSPSRQLVAEMMILAGEIAGRYCQEHEIPVPFRGQPQPELPPDE 491
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 492 ELILLPAGPVRSCALRRCMPRSEMT-TIPNRHASLGLNTYSQVTSPIRRYTDLLTHFQL 549
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V RP+GKK+W+V DQ G ++PQ+ ++V G +++
Sbjct: 1 MEKGTLVEFRVQGER-RLGVIDRPEGKKDWIVIDQGGNPHKLRPQRFDYIVKGGPS-NYR 58
Query: 170 DISNFLQKAEDNL 182
+I NFL++ + L
Sbjct: 59 EIGNFLREVQPYL 71
>gi|307150006|ref|YP_003885390.1| exoribonuclease II [Cyanothece sp. PCC 7822]
gi|306980234|gb|ADN12115.1| Exoribonuclease II [Cyanothece sp. PCC 7822]
Length = 676
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/297 (44%), Positives = 188/297 (63%), Gaps = 7/297 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R DLTHLK+Y ID + E+DD LS L +G+I+++IH+ADP++ + PG D
Sbjct: 263 DPDVKRLDLTHLKIYTIDDESTQEIDDGLSVEFLDEGKIRLWIHIADPSRLVTPGDELDL 322
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +R TS++LPT MFP +LA MSL QG+VC A++ +V+L+ DGS+ +YS+ S+
Sbjct: 323 EARRRSTSLYLPTGMISMFPPELATGPMSLVQGQVCPALSFAVILNDDGSVLDYSIHASL 382
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
+KPTY LTYE E+L L+++ E E+ IL +A R++WR QG+I+ + E+ IKV
Sbjct: 383 VKPTYRLTYEDVDEMLQLDIKAEPEIGILGSSAIRRVEWRKSQGSINISMPESVIKVK-- 440
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
E+ E ++ L + + +LV+EMMIL GE Y + L +P+RGQPQ +
Sbjct: 441 ENDEIVVELLYSSR---SRQLVAEMMILAGEVAGRYCQQHELPVPFRGQPQPELPPEEEL 497
Query: 420 H-LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LP GPVRS A+ + M + + P RH LGL Y Q TSPIRRY DLL H+QV
Sbjct: 498 IVLPAGPVRSCALRRCMPRSELT-TTPSRHASLGLDVYTQVTSPIRRYTDLLTHFQV 553
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 105 LENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVE 164
+E L KG L+EF+ +R LAV RPDGKK+W+V DQ G + I+PQ+V F V G
Sbjct: 1 MEKGTLSKGKLVEFRLQGER-RLAVVDRPDGKKDWIVIDQGGQAHKIRPQRVEFEVTG-G 58
Query: 165 KFDHKDISNFLQKAE 179
+ DI+NFLQ+ +
Sbjct: 59 PYQPSDIANFLQQVQ 73
>gi|56750434|ref|YP_171135.1| ribonuclease II [Synechococcus elongatus PCC 6301]
gi|81299933|ref|YP_400141.1| exoribonuclease II [Synechococcus elongatus PCC 7942]
gi|56685393|dbj|BAD78615.1| ribonuclease II [Synechococcus elongatus PCC 6301]
gi|81168814|gb|ABB57154.1| Exoribonuclease II [Synechococcus elongatus PCC 7942]
Length = 670
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/293 (47%), Positives = 180/293 (61%), Gaps = 6/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL+HLKVY ID + E+DD LS RL DGR+++++HVADPT+ IEPG D +A +
Sbjct: 263 RRQDLSHLKVYTIDDESTREIDDGLSCQRLSDGRLQLWVHVADPTRLIEPGDALDLEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG+ C A++ + L G+IA Y + S I+PT
Sbjct: 323 RSTTIYLPTGMVPMFPLELAAGPMSLVQGQACCALSFGICLDEQGAIASYEIVPSQIRPT 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L + E EL L E A R +WR QQGAI E IKV+ +D
Sbjct: 383 YRLTYEDVDEMLDLGVTAEQELLDLWEMAQRRRRWRHQQGAIAINMPEAVIKVSEADDQ- 441
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
I++ V +++ A LV+EMMIL GE YG+ N L LP+RGQPQ + LP
Sbjct: 442 --ISISVLEES-AARALVAEMMILAGEVAGHYGATNGLPLPFRGQPQPELPSEEELLALP 498
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRS AI + M + P RH LGL Y Q TSPIRRY DL+ H+Q+
Sbjct: 499 AGPVRSCAIRRCMPRSETSL-NPQRHASLGLDRYSQVTSPIRRYTDLVTHFQI 550
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++ G L+EF+ R L V RPDGKKNW+V D+ GA+ S+ P+ T+VV G + + +
Sbjct: 1 MEAGTLIEFRLGGQRHL-GVLDRPDGKKNWIVVDERGANRSLHPRDFTYVVAG-QIYKPQ 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDAL 208
+++ F ++ E LL+ L + + VDE +E + A+
Sbjct: 59 ELAAFRREVE-ALLDPDALA--IAWEMLVDEGEEAELAI 94
>gi|254417643|ref|ZP_05031377.1| RNB-like protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196175561|gb|EDX70591.1| RNB-like protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 671
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 177/292 (60%), Gaps = 7/292 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLKVY +D + E+DD LS +L DG+ +++IH+ADPT+ + P D++A +R
Sbjct: 263 RLDLTHLKVYTVDDESTSEIDDGLSLEQLDDGKERLWIHIADPTRLVRPDDELDREARRR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+++LPT MFP +LA MSL +G+VC ++ V+L DGS+ EY + S+IKPTY
Sbjct: 323 STTLYLPTGMISMFPAELATGPMSLVEGQVCPTLSFGVILDEDGSVQEYKIHPSLIKPTY 382
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE E+L L ++ E E+ +++ A R +WR QGAI E IKV D +
Sbjct: 383 RLTYEDVDEMLELGVKAEPEIAAIAKWAKRRQEWRSSQGAISIHMPEAVIKV---RDQDE 439
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLPE 423
II +ED A +V+EMMIL GE YG + + LP+RGQPQ + LP
Sbjct: 440 IIIQVLEDSQ--ARLMVAEMMILAGEVAGRYGQSHQIPLPFRGQPQPELPSDEELLVLPP 497
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 498 GPVRFCAMRRCMPRSEMSI-TPLRHAGLGLETYTQVTSPIRRYTDLLNHFQL 548
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L A+ RPDGK W V D+ G S ++ P+QVT+ V KFD
Sbjct: 1 MEKGTLIEFRVQGDRHL-AIVDRPDGKTRWTVIDEQGQSHTLHPRQVTYEVQD-GKFDVS 58
Query: 170 DISNFLQKAEDNL 182
+I +FL + E L
Sbjct: 59 EIPDFLSQIEPYL 71
>gi|428307273|ref|YP_007144098.1| exoribonuclease II [Crinalium epipsammum PCC 9333]
gi|428248808|gb|AFZ14588.1| Exoribonuclease II [Crinalium epipsammum PCC 9333]
Length = 683
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 175/293 (59%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS DGR +++IH+ADP++ + PG D +A +
Sbjct: 274 NRLDLTHLKVYTIDDESTQEIDDGLSVETSSDGRQRLWIHIADPSRLVSPGDDLDLEARR 333
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP LA MSL QG++C A++ V+L G + EY + + +KPT
Sbjct: 334 RTTTLYLPTGMIPMFPPDLATGPMSLVQGKLCYALSFGVILDESGGVEEYRIHPTSVKPT 393
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A LR WR QG+I+ + E IKV E
Sbjct: 394 YRLTYEDVDEMLQLGVQAEPEIADIAALARLRQSWRQSQGSINISMPEASIKVYGDEI-- 451
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
IN+ +ED P+ +LV+EMMIL GE YG + L L YR QPQ + LP
Sbjct: 452 -TINV-LED--SPSRQLVAEMMILAGEVAGRYGQDHQLPLLYRSQPQPELPPQEELLQLP 507
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DLLAH+Q+
Sbjct: 508 AGPVRFCAMRRCMPRSEMSV-TPARHASLGLETYTQVTSPIRRYSDLLAHFQI 559
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+++++KG L+EF ++ +R LAV RP+GKK+W+ D S ++ P+++T+ V G + +
Sbjct: 10 SKLVEKGTLIEFWQNGER-RLAVIDRPEGKKHWIAIDVRSQSHTLHPRKITYEVKG-QTY 67
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRLQDGRIKVYIHVA 225
DI +FL + + L D + ++V + + V++ + D A A L + VY + A
Sbjct: 68 KPSDIPSFLAEVQPLL----DPSSVEVAWELLVEDGETFDPATLASILFSDQSPVYCYAA 123
>gi|443310614|ref|ZP_21040260.1| exoribonuclease R [Synechocystis sp. PCC 7509]
gi|442779319|gb|ELR89566.1| exoribonuclease R [Synechocystis sp. PCC 7509]
Length = 679
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 173/288 (60%), Gaps = 8/288 (2%)
Query: 189 THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSV 248
T LKVY ID + E+DD LS L +G+ K+++H+ADPT+++ P DK+A +RGT+V
Sbjct: 281 TRLKVYTIDDESTSEIDDGLSWEVLANGQQKLWVHIADPTRWLIPEDELDKEARRRGTTV 340
Query: 249 FLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTY 308
+LPT PMFP LA MSL QG+ C A++ V+L G++ YS+ S+IKPTY LTY
Sbjct: 341 YLPTGMIPMFPAVLATGPMSLIQGKSCCALSFGVILDELGAVESYSIHASVIKPTYRLTY 400
Query: 309 ESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINL 368
E E+L L L E E+ ++ A LR WR QGAI E IKV E IN+
Sbjct: 401 EDVDEMLQLGLRAEPEIAAIASLAQLRKTWRHSQGAISIHLPEASIKVKGDEI---TINV 457
Query: 369 YVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEGPVR 427
+ED + +LV+EMMIL GE YG +N+ALP+RGQPQ + LP GPVR
Sbjct: 458 -LEDST--SRQLVAEMMILAGEVAGRYGQAHNIALPFRGQPQPELPSAEELIQLPAGPVR 514
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 515 ACGMRRCMPKSEMSI-TPSRHAGLGLQTYTQATSPIRRYSDLLTHFQL 561
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EFK DR LAV RPDGK W V D+ G + S+ P+QVT+ VPG + +
Sbjct: 1 MDKGTLVEFKVQGDR-RLAVVDRPDGKTRWFVVDERGTAHSLTPRQVTYSVPG-QTYKAS 58
Query: 170 DISNFL 175
+I FL
Sbjct: 59 EIPKFL 64
>gi|300869627|ref|ZP_07114207.1| exoribonuclease II [Oscillatoria sp. PCC 6506]
gi|300332405|emb|CBN59407.1| exoribonuclease II [Oscillatoria sp. PCC 6506]
Length = 670
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 183/297 (61%), Gaps = 8/297 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ +R DLTHLKVY ID + E+DD LS L++G+ +++IH+ADPT + PG D
Sbjct: 260 DSESDRLDLTHLKVYTIDDESTTEIDDGLSLEFLENGQQQLWIHIADPTSLLSPGDELDL 319
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR T+V+LPT PMFP +LA MSL QG+VC +++ V+L G+I +YS+ ++
Sbjct: 320 EARKRTTTVYLPTGMVPMFPPELATGPMSLVQGQVCPSLSFRVILDETGAIQDYSIHITL 379
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+LHL + E E+ ++ A +R WR QGAI E+ IKV
Sbjct: 380 IKPTYRLTYEDVDEMLHLAIAAEPEISAIAAWAKVRHGWRQTQGAISIYMPESVIKVCGD 439
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
+ ++++V D + PA LV+EMMIL GE A YG ++L LPYR QPQ +
Sbjct: 440 D-----VSVHVLDDS-PARELVAEMMILTGEVAAQYGQTHSLVLPYRHQPQPELPPEEEL 493
Query: 420 HLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GP R+ A+ + M + + P RH LGL Y Q TSPIRRYMDLLAH+Q+
Sbjct: 494 LQLPAGPARACAVRRCMPRSEMSL-MPARHAGLGLEAYTQVTSPIRRYMDLLAHFQI 549
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA RPDGKKNW+V D+N S SI P+Q+++ V G E +
Sbjct: 1 MEKGTLIEFRLHGER-RLAVADRPDGKKNWVVVDENSQSHSIPPKQISYEVVG-ETYKPT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
I FL++ E N D T L+V + + V++ + +D AM L
Sbjct: 59 QIPTFLKEVE----NYSDPTSLEVAWELLVEDGETVDPPGLAMLL 99
>gi|443323592|ref|ZP_21052597.1| exoribonuclease R [Gloeocapsa sp. PCC 73106]
gi|442786772|gb|ELR96500.1| exoribonuclease R [Gloeocapsa sp. PCC 73106]
Length = 667
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 184/306 (60%), Gaps = 9/306 (2%)
Query: 172 SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+N D +R DLTHLKVY ID + E+DD LS R+ K++IH+ADPT+ +
Sbjct: 251 TNLTTPPPDPDRDRLDLTHLKVYTIDDESTKEIDDGLSVERIDSQTNKIWIHIADPTRLM 310
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
PG D +A +R T+++LPT MFP +LA MSL QG+VC A++ VVL S G +
Sbjct: 311 SPGDELDLEARRRSTTLYLPTGMISMFPTELATGPMSLVQGKVCPALSFGVVLDSTGGVL 370
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLE 351
+Y + S+IKPTY LTYE E+L L+++ E E+ IL +A RL+WR +QG+I+ E
Sbjct: 371 DYCIHASLIKPTYRLTYEDVDEMLELDIQGEPEISILGASAKQRLKWRTEQGSINIQMPE 430
Query: 352 TRIKV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
+ IKV AN E I + + D + + +LV+EMMIL GE Y ++L +P+R QPQ
Sbjct: 431 SSIKVSANDE-----ITIELLDNSR-SRQLVAEMMILAGEVGGRYCQDHHLPVPFRSQPQ 484
Query: 411 SNIDVSAFAHLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
+ L GPVRS A+ + M + I P RH LGL Y Q TSPIRRY DL
Sbjct: 485 PELPPEEELILLPAGPVRSCALRRCMPRSEISI-NPARHASLGLNTYTQVTSPIRRYTDL 543
Query: 470 LAHYQV 475
LAH+Q+
Sbjct: 544 LAHFQL 549
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ R LAV RP+GKK+W+V DQ+G ++PQ+V + + G + +
Sbjct: 1 MEKGTLIEFRLQGHR-RLAVVDRPEGKKDWIVIDQSGHPHKLRPQRVEYTING-GPYRSE 58
Query: 170 DISNFLQKAEDNL 182
DI +FL++ E L
Sbjct: 59 DIPSFLKQVEPYL 71
>gi|434399751|ref|YP_007133755.1| Exoribonuclease II [Stanieria cyanosphaera PCC 7437]
gi|428270848|gb|AFZ36789.1| Exoribonuclease II [Stanieria cyanosphaera PCC 7437]
Length = 671
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/294 (45%), Positives = 181/294 (61%), Gaps = 8/294 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKYIEPGSLSDKDAM 242
NR DLTHLKVY ID + +E+DD LS +DG+ K++IH+ADP++ + PG D +A
Sbjct: 262 NRLDLTHLKVYTIDDESTEEIDDGLSVEYSEDGKSAKLWIHIADPSRIVTPGDELDLEAR 321
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R TS++LPT MFP +LA MSL QG+ C A++ VVL G + EYS+ ++IKP
Sbjct: 322 RRSTSLYLPTGMISMFPSELATGPMSLIQGQTCAALSFGVVLDETGLVKEYSIHPTLIKP 381
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTY+ E+L L + +E E+ L++ A+LR +WR QQG+I E+ IKV E+
Sbjct: 382 TYRLTYDDVDEMLDLGVTKEPEIAELAKWASLRRKWRQQQGSIQILMPESLIKVK--ENE 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
E II L E + + +LV+EMMIL GE YG +NL LP+RG L
Sbjct: 440 EIIIELLDESK---SRQLVAEMMILAGEVAGKYGQEHNLPLPFRGQPQPELPPEEELLQL 496
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P GPVR A+ + M + I P RH LGL Y+Q TSPIRRY DLLAH+Q+
Sbjct: 497 PPGPVRFCALRRCMPRSEIS-TTPARHASLGLDSYIQVTSPIRRYTDLLAHFQI 549
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 62/94 (65%), Gaps = 7/94 (7%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA+RP+GKK+W+V D++G S I+PQ+V + V G +
Sbjct: 1 MEKGTLIEFRIQGER-RLAVAERPEGKKDWIVIDESGQSHKIRPQRVEYTVNG-GLYKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEAD 202
DI+NF+ +A+ L D + L+V + I V++ D
Sbjct: 59 DIANFINEAQSYL----DPSSLEVAWEILVEDGD 88
>gi|434393485|ref|YP_007128432.1| Exoribonuclease II [Gloeocapsa sp. PCC 7428]
gi|428265326|gb|AFZ31272.1| Exoribonuclease II [Gloeocapsa sp. PCC 7428]
Length = 685
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 171/293 (58%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT+LKVY ID E+DD +S L D R +++IH+ADPT+++ P D DA +
Sbjct: 277 QRLDLTYLKVYTIDDQSTSEIDDGVSWELLADKRQRLWIHIADPTRWLVPEDELDLDARR 336
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP LA MSL QG+VC A++ VVL G++ EYS+ S+IKPT
Sbjct: 337 RGTTVYLPTGMIPMFPSILATGPMSLLQGKVCCALSFGVVLDESGAVQEYSIHPSLIKPT 396
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E+ ++ A R WR QGAI E IKV + E
Sbjct: 397 YRLTYEDVDEMLELGVEGEPEIAAIATLAQRRQMWRQSQGAISINLPEAIIKVQDDEITI 456
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
++N + Q LV+EMMIL GE Y + +ALP+RGQPQ + LP
Sbjct: 457 KVLNDSLSRQ------LVAEMMILAGEVAGHYAQVHKIALPFRGQPQPELPSEEELIQLP 510
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G R+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 511 AGFARACAMRRCMPKSEMSI-TPTRHAGLGLATYTQATSPIRRYTDLLTHFQL 562
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W+ D+ G++ S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKSRWIAVDERGSTHSLAPRQITYQVSG-QSYKPP 58
Query: 170 DISNFLQKAEDNL 182
+I FL + + L
Sbjct: 59 EIPQFLAEVQAYL 71
>gi|428310624|ref|YP_007121601.1| exoribonuclease R [Microcoleus sp. PCC 7113]
gi|428252236|gb|AFZ18195.1| exoribonuclease R [Microcoleus sp. PCC 7113]
Length = 671
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/294 (43%), Positives = 174/294 (59%), Gaps = 9/294 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT LKVY ID + E+DD LS L+DGR +++IH+ADPT+ + G D +A +
Sbjct: 262 DRLDLTGLKVYTIDDESTQEIDDGLSIEVLEDGRQRLWIHIADPTRLVMQGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG VC A++ VVL GS+ +Y + S +KPT
Sbjct: 322 RSTTLYLPTGMVPMFPPELATGPMSLVQGRVCPALSFGVVLDETGSVQDYQIRASFVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L + E E+ ++ A R +WR QGAI E+ IKV +D
Sbjct: 382 YRLTYEDVDEMLELGVRAEPEIAEIATWAYKRQEWRRSQGAISIHMPESVIKVKGEDD-- 439
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHL 421
+ +E D R LV+EMMIL GE YG + + LP+RGQPQ + L
Sbjct: 440 ----ISIEVLEDSRSRLLVAEMMILAGEVAGRYGQTHQIPLPFRGQPQPELPSEEELMQL 495
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P GPVR A+ + M + + P+RH LGL Y Q TSPIRRY DL++H+Q+
Sbjct: 496 PAGPVRFCAMRRCMPKSEMSI-TPLRHAGLGLEIYTQVTSPIRRYTDLMSHFQI 548
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR LA A RP+GKK+W+V D+ G S ++ P+Q+T+ V G
Sbjct: 1 MEKGTLIEFRLGGDR-RLATADRPEGKKHWIVVDERGQSHTLHPRQITYEVTGC-TLKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV 193
+I +F+++ E L D T L+V
Sbjct: 59 EIPSFVKEVEPYL----DPTSLEV 78
>gi|427733634|ref|YP_007053178.1| exoribonuclease R [Rivularia sp. PCC 7116]
gi|427368675|gb|AFY52631.1| exoribonuclease R [Rivularia sp. PCC 7116]
Length = 681
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 179/293 (61%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY +D + E+DD LS L D R +V++H+ADPT+++ P D DA K
Sbjct: 278 NRLDLTHLKVYTVDDETTTEIDDGLSWETLPDNRERVWVHIADPTRWLVPEDELDLDARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QGE+C A++ +VL G + EYS+ S+IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEILATGPMSLIQGEICCALSFGIVLDETGGVEEYSIHASLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE ++L + EE E+ L + A R WR +QGAI E IKV + E
Sbjct: 398 YRLTYEDVNDILESGVREEPEIAALGKWAKKRKSWRYEQGAISINMPEAMIKVKDDE--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+N+ + D + + +LV+EMMIL GE A YG +++ LP+RGQPQ + L
Sbjct: 455 --VNIDLLDDSH-SRQLVAEMMILTGEVAARYGKTHSIPLPFRGQPQPELPPEEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-NPLRHAGLGLETYTQATSPIRRYSDLLTHFQI 563
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L V +RPDGK W+V D+ G S S+ P+Q T+ V G + +
Sbjct: 1 MEKGTLVEFRNQGER-RLGVVERPDGKNRWIVLDERGQSTSLAPRQFTYKVVG-QTYKPS 58
Query: 170 DISNFLQKAEDNL 182
+I +FL++ E L
Sbjct: 59 EIPDFLKQVESYL 71
>gi|282895501|ref|ZP_06303638.1| Ribonuclease II [Raphidiopsis brookii D9]
gi|281199534|gb|EFA74397.1| Ribonuclease II [Raphidiopsis brookii D9]
Length = 683
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 179/294 (60%), Gaps = 8/294 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DL HLKVY ID + E+DD LS L+DGR +V+IH+ADPT+++ P D +A
Sbjct: 277 VNRLDLKHLKVYTIDDESTTEIDDGLSCELLEDGRQRVWIHIADPTRWLIPEDELDLEAR 336
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RG++V+LPT PMFPE LA MSL QG +C +++ SV+L G +AEYS+ +IKP
Sbjct: 337 RRGSTVYLPTGMIPMFPEVLATGPMSLIQGRLCCSLSFSVILDDSGGVAEYSIHPCVIKP 396
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L ++ E E++ ++ A R WR QGAI E IKV N E
Sbjct: 397 TYRLTYEDVDEMLDLAVQAEPEIQAIAGLAQKRKTWRNNQGAISITMPEAMIKVKNDE-- 454
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
I++ + D++ P+ +LV+EMMIL GE A Y +N+ LP+RG L
Sbjct: 455 ---ISIDILDES-PSRQLVAEMMILAGEVAARYAQSHNIPLPFRGQPQPELPPEEELLQL 510
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P G VR A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 511 PPGFVRFCALRRCMPKSEMS-TTPLRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T++V G E +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIVNG-EGYKST 58
Query: 170 DISNFLQK 177
I FL +
Sbjct: 59 QIPKFLDQ 66
>gi|186685031|ref|YP_001868227.1| ribonuclease II [Nostoc punctiforme PCC 73102]
gi|186467483|gb|ACC83284.1| ribonuclease II [Nostoc punctiforme PCC 73102]
Length = 686
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 181/297 (60%), Gaps = 8/297 (2%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D+ NR DLTHLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D
Sbjct: 274 DSDTNRLDLTHLKVYTIDDETTTEIDDGLSWEILPDGRERLWVHIADPTRWLVPEDELDL 333
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG++V+LPT PMFPE LA MSL QG VC A++ ++L + G + +YS+ S
Sbjct: 334 EARKRGSTVYLPTGMIPMFPEVLATGPMSLIQGRVCCALSFGIILGTTGGVEDYSIHTSS 393
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IKPTY LTYE E+L L ++ E E+ ++ A R WR QGAI E IKV
Sbjct: 394 IKPTYRLTYEDVDEMLQLRVQAEPEIAAIASWAQKRKTWRYAQGAISITMPEATIKVKGD 453
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
E IN+ + D + P+ ++V+EMMI+ GE A YG +N+ LP+RGQPQ +
Sbjct: 454 E-----INIDILDDS-PSRQVVAEMMIVAGEVAARYGKAHNIPLPFRGQPQPELPPEEEL 507
Query: 420 HLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
L G VR+ A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 508 LLLPAGFVRACAMRRCMPKSEMSI-TPLRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 7/102 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L + +RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGIVERPDGKTRWFVVDERGQSHSLAPRQITYTVTG-QTYKPS 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSA 210
+I++FL++ L D + L+V + I V++ + + L A
Sbjct: 59 EIASFLEQVNPYL----DPSSLEVAWEILVEDGETITPELMA 96
>gi|119488090|ref|ZP_01621534.1| Ribonuclease II [Lyngbya sp. PCC 8106]
gi|119455379|gb|EAW36518.1| Ribonuclease II [Lyngbya sp. PCC 8106]
Length = 672
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 175/293 (59%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT LKVY ID + E+DD LS + DG+ +++IH+ADPT+ + PG D +A +
Sbjct: 264 DRLDLTDLKVYTIDDESTREIDDGLSVEFMADGQQRLWIHIADPTRLLCPGDELDLEARR 323
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+V+LPT PMFP +LA MSL +G++C A++ V+L G + +YS+ S IKPT
Sbjct: 324 RTTTVYLPTGIIPMFPSELATGPMSLVEGKLCCALSFGVILDESGQVKDYSIHASTIKPT 383
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+LHL + E E++ L+ R QWR QGAI E+ IKV E
Sbjct: 384 YRLTYDDVDEMLHLGITAEPEIEALATWTKRRKQWRDSQGAISIYMPESLIKVEEDE--- 440
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
I + V D + P+ ++V+EMMIL GE A YG +NL LPYR QPQ LP
Sbjct: 441 --ITIKVLDDS-PSRQIVAEMMILTGEVAARYGQAHNLDLPYRSQPQPELPPAEELLLLP 497
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VRS A+ + M + + P RH L L Y Q TSPIRRY DLL H+Q+
Sbjct: 498 AGAVRSCAMRRYMPRSEVSL-TPARHASLALETYTQVTSPIRRYSDLLTHFQI 549
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R L VA RP+GKK+W+V D G S +I P+QVT+ V G + +
Sbjct: 1 MEKGTLIEFRVHGER-RLGVADRPEGKKHWIVIDDQGGSHTIHPRQVTYEVAG-QTYKPS 58
Query: 170 DISNFLQKAE 179
DI F Q+ E
Sbjct: 59 DIPTFFQELE 68
>gi|282901218|ref|ZP_06309147.1| Ribonuclease II [Cylindrospermopsis raciborskii CS-505]
gi|281193918|gb|EFA68886.1| Ribonuclease II [Cylindrospermopsis raciborskii CS-505]
Length = 684
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 131/294 (44%), Positives = 179/294 (60%), Gaps = 8/294 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DL HLKVY ID + E+DD LS L+DGR +V+IH+ADPT+++ P D +A
Sbjct: 278 VNRLDLKHLKVYTIDDESTTEIDDGLSCELLEDGRQRVWIHIADPTRWLIPEDELDLEAR 337
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RG++V+LPT PMFPE LA MSL QG +C +++ SV+L G +AEYS+ +IKP
Sbjct: 338 RRGSTVYLPTGMIPMFPEVLATGPMSLIQGRLCCSLSFSVILDDSGGVAEYSIHPCLIKP 397
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L ++ E E++ ++ A R WR QGAI E IKV N E
Sbjct: 398 TYRLTYEDVDEMLDLAVQAEPEIQAIAGLARKRKTWRNNQGAISITMPEAMIKVKNDE-- 455
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
I++ + D++ P+ +LV+EMMIL GE A Y +N+ LP+RG L
Sbjct: 456 ---ISIDILDES-PSRQLVAEMMILAGEVAARYAKSHNIPLPFRGQPQPELPPEEELLQL 511
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P G VR A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 PPGFVRFCALRRCMPKSEMS-TTPLRHAGLGLDTYTQATSPIRRYSDLLTHFQL 564
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+++ E +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYIISNGEGYKST 59
Query: 170 DISNFLQKAEDNL 182
I FL++ E L
Sbjct: 60 QIPRFLEQVEPYL 72
>gi|414079583|ref|YP_007001007.1| ribonuclease II [Anabaena sp. 90]
gi|413972862|gb|AFW96950.1| ribonuclease II [Anabaena sp. 90]
Length = 686
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 181/293 (61%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS L DG+ ++++H+ADPT+ + P D +A K
Sbjct: 278 NRLDLTHLKVYTIDDESTTEIDDGLSWEILPDGKERLWVHIADPTRLLMPDDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG+VC A++ V+L + GS+ +Y + +IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLIQGKVCCALSFGVILDAVGSVEDYCIHTGLIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+L L ++ E E++ ++ A +R WR QGAI E IKV + +
Sbjct: 398 YRLTYQDVDEMLELGVQAEPEIEAIANWAKIRKTWRYGQGAISINMPEAMIKVKDDD--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
IN+ V D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 --INIDVLDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VRS A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRSCAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK +W V D+ G S +IK Q T+ V G + +
Sbjct: 1 MDKGTLVEFRVKGDR-RLGVIDRPDGKTSWFVVDERGQSHNIKNNQFTYTVNG-QTYKPG 58
Query: 170 DISNFLQKAEDNL 182
+I+ FL + + L
Sbjct: 59 EIAEFLSQVQPYL 71
>gi|218246504|ref|YP_002371875.1| exoribonuclease II [Cyanothece sp. PCC 8801]
gi|218166982|gb|ACK65719.1| Exoribonuclease II [Cyanothece sp. PCC 8801]
Length = 671
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 183/293 (62%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + +E+DD LS L D ++K++IH+ADPT+ + PG D +A +
Sbjct: 262 DRLDLTHLKVYTIDDESTEEIDDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT MFP +LA MSL QG++C +++ +V L ++G++ +YS+ S+IKPT
Sbjct: 322 RTTTLYLPTGMISMFPVELATGPMSLIQGKICPSLSFAVTLDNEGAVLDYSIHASLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L ++ E E++IL+EAA R WR QGAI+ E IKV + ED E
Sbjct: 382 YRLTYYDVDEMLQWGIKNEPEIRILAEAAKKRHLWRQSQGAINIKMPEAVIKVKS-ED-E 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
+I L ++ + +LV+EMMIL GE Y + L +P+RGQPQ LP
Sbjct: 440 IVIELI---ESSRSRQLVAEMMILAGEVAGRYCQEHGLPVPFRGQPQPELPPDEELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ A+ + M + I P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 497 PGPVRACALRRCMPRSEIG-TIPNRHASLGLNTYTQVTSPIRRYTDLLTHFQL 548
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+E + +R LAV RP+GKK+WMV D G S I+PQ+V + V G + +
Sbjct: 1 MEKGKLIEIRVQGER-RLAVVDRPEGKKDWMVIDAGGQSHKIRPQRVEYEVEG-GPYSPQ 58
Query: 170 DISNFLQKAEDNL 182
+I FL+ E L
Sbjct: 59 EIPQFLRDVEPYL 71
>gi|119509770|ref|ZP_01628915.1| Ribonuclease II [Nodularia spumigena CCY9414]
gi|119465636|gb|EAW46528.1| Ribonuclease II [Nodularia spumigena CCY9414]
Length = 686
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 174/293 (59%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL+HLKVY ID + E+DD LS L DGR ++++H+ADPT+++ P D +A K
Sbjct: 278 NRLDLSHLKVYTIDDESTTEIDDGLSWEILPDGRERLWVHIADPTRWLVPEDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG + A++ VVL G + +Y++ S IKPT
Sbjct: 338 RGSTVYLPTGMVPMFPELLATGPMSLVQGRISCALSFGVVLDESGGVEDYTIHPSFIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E++ ++ A R WR QGAI E IKV N +
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIEAIANWAKRRKSWRYNQGAISINMPEATIKVKNDQIDI 457
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I++ Q LV+EMMI+ GE A YG +N+ LP+RGQPQ + L
Sbjct: 458 DILDDSSSRQ------LVAEMMIMAGEVAARYGQAHNIPLPFRGQPQPELPPDEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VRS A+ + M + + P+RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRSCAMRRCMPKSEMSI-TPLRHAGLGLNTYTQATSPIRRYSDLLTHFQL 563
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK W + D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MDKGTLVEFRVQGDR-RLGVVDRPDGKTRWFIVDERGQSHSLAPRQITYTVNG-QTYKPS 58
Query: 170 DISNF 174
+I++F
Sbjct: 59 EIASF 63
>gi|427711712|ref|YP_007060336.1| exoribonuclease R [Synechococcus sp. PCC 6312]
gi|427375841|gb|AFY59793.1| exoribonuclease R [Synechococcus sp. PCC 6312]
Length = 670
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 174/293 (59%), Gaps = 10/293 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHLKVY ID + E+DD +S L +G+ +++IH+ADP++++ G +++A +R
Sbjct: 268 RQDLTHLKVYTIDDESTQEIDDGISLETLPNGQERLWIHIADPSRWLLLGDGLEQEARRR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+V+LPT PMFP +LA MSL G+ C A++ ++L DGSIA+Y + S+IKPTY
Sbjct: 328 ATTVYLPTGMIPMFPPELATGPMSLVAGKTCCALSFGIILQPDGSIADYQICPSLIKPTY 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-DPE 363
LTYE +L L ++ E EL + RL WR QQGAI E IKV + E D
Sbjct: 388 RLTYEDVDMMLELAVQNEPELLGIGAWMQKRLAWRQQQGAIQINMPEPEIKVVDDEVDIH 447
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
P+ + A +LV+EMMIL GE A +G N+ LP+R Q Q + LP
Sbjct: 448 PLADSV-------ARQLVAEMMILTGEVAARFGEAQNIPLPFRSQTQPELPPEEELQQLP 500
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR AI + M + + P RH LGL Y Q TSPIRRY DL+AH Q+
Sbjct: 501 PGPVRQCAIRRCMPKSEMS-PTPNRHASLGLNAYCQVTSPIRRYSDLIAHMQI 552
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ ++ R L V +RP+GKK+W+V D N + ++ P+Q+T+ V G E++ +
Sbjct: 1 MEKGTLVEFRVNNQR-RLGVVERPEGKKHWIVIDSNHQAHTLHPRQITYTVTG-ERYQTQ 58
Query: 170 DISNFLQKAEDNLLNRKDL 188
+I F QKA + L+ + L
Sbjct: 59 EIPQF-QKAVEPFLDPESL 76
>gi|172038259|ref|YP_001804760.1| ribonuclease II [Cyanothece sp. ATCC 51142]
gi|354554390|ref|ZP_08973695.1| Exoribonuclease II [Cyanothece sp. ATCC 51472]
gi|171699713|gb|ACB52694.1| ribonuclease II [Cyanothece sp. ATCC 51142]
gi|353554069|gb|EHC23460.1| Exoribonuclease II [Cyanothece sp. ATCC 51472]
Length = 670
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/306 (43%), Positives = 183/306 (59%), Gaps = 8/306 (2%)
Query: 172 SNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
S++LQ D +R DLTHLKVY ID + +E+DD LS L D R+K++IH+ADPT+
Sbjct: 249 SSYLQTLPPDADSDRLDLTHLKVYTIDDESTEEIDDGLSVEYLDDDRVKLWIHIADPTRL 308
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PG D +A KR T+++LPT MFP +LA MSLRQG++C A++ V+L S G+I
Sbjct: 309 VTPGDELDLEARKRSTTLYLPTGMISMFPVELATGPMSLRQGKLCAALSFGVILDSHGAI 368
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+YS+ S+IKPTY LTY E+L L + E+EL +L+EAA R QWR QG+I
Sbjct: 369 LDYSIHASLIKPTYRLTYHDVDEMLQLGITAESELAVLAEAAKKRHQWRQSQGSITIKMP 428
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E IKV + + + + +LV+EMMIL GE Y + + +P+RGQPQ
Sbjct: 429 EAIIKVKS-----EEEIIIELLETSISRQLVAEMMILAGEVAGNYCREHGIPVPFRGQPQ 483
Query: 411 -SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
LP GPVR+ A+ + M + + P RH LGL Y Q TSPIRRY DL
Sbjct: 484 PELPSEEELLLLPPGPVRACALRRCMPRSEMG-TLPSRHASLGLDNYTQVTSPIRRYTDL 542
Query: 470 LAHYQV 475
L H+Q+
Sbjct: 543 LTHFQL 548
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ + + L V RP+GKK+W+V D G S ++PQ+V + VPG + +
Sbjct: 1 MEKGKLVEFRVNGE-PRLGVVDRPEGKKDWIVIDSEGHSHKLRPQRVDYEVPG-GSYSNS 58
Query: 170 DISNFLQKAE 179
DI FL++ +
Sbjct: 59 DIPQFLKEIQ 68
>gi|428775398|ref|YP_007167185.1| exoribonuclease II [Halothece sp. PCC 7418]
gi|428689677|gb|AFZ42971.1| Exoribonuclease II [Halothece sp. PCC 7418]
Length = 667
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/298 (43%), Positives = 184/298 (61%), Gaps = 7/298 (2%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D+ NR DLT KVY ID + E+DD +S L+DGR +++IH+ADPT+ ++P D
Sbjct: 257 DDSEYNRADLTQQKVYTIDDESTKEIDDGVSIETLEDGRQQIWIHIADPTRLVQPEDELD 316
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TS++LPT PMFP +LA MSL QG++C A++ V+L ++G I++Y++ S
Sbjct: 317 QEARRRSTSLYLPTGMIPMFPSELATGPMSLVQGQICPAMSFGVILEANGEISDYTIAAS 376
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+KPTY LTYE E+L L + E E+ L++ A R QWR QG+I+ + E IKV+
Sbjct: 377 WVKPTYRLTYEDVDEMLELGVTAEPEIAQLAQWAQQRKQWRQSQGSINISLPEAVIKVSQ 436
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
E+ E I L ++D PA +LV+EMMIL GE A + + + LP+R QPQ +
Sbjct: 437 EEEVE--IEL-LDD--SPARQLVAEMMILTGEVAARFAIDHEIPLPFRSQPQPELPPEEE 491
Query: 419 AHLPE-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR AI M + + P RH LGL Y Q TSPIRRY+DLL H+Q+
Sbjct: 492 LLQLPAGPVRYCAIRGCMPRSEMS-TTPARHAGLGLEVYTQVTSPIRRYVDLLGHFQI 548
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK +R LAVA+RP+GKK+W+V DQ G S ++ P+QV + V G K +
Sbjct: 1 MEKGTLIEFKAQGER-RLAVAERPEGKKHWIVLDQWGQSHTLHPRQVEYEVGGDPK-RPQ 58
Query: 170 DISNFLQKAEDNL 182
DIS FL++ E L
Sbjct: 59 DISAFLREVEAYL 71
>gi|257059537|ref|YP_003137425.1| exoribonuclease II [Cyanothece sp. PCC 8802]
gi|256589703|gb|ACV00590.1| Exoribonuclease II [Cyanothece sp. PCC 8802]
Length = 671
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/293 (44%), Positives = 180/293 (61%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHLKVY ID + +E+DD LS L D ++K++IH+ADPT+ + PG D +A +
Sbjct: 262 DRLDLTHLKVYTIDDESTEEIDDGLSVEFLSDDQVKLWIHIADPTRLVSPGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT MFP +LA MSL QG++C +++ +V L G++ +YS+ S+IKPT
Sbjct: 322 RTTTLYLPTGMISMFPVELATGPMSLIQGKICPSLSFAVTLDDQGAVLDYSIHASLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L ++ E E++IL+E A R WR QGAI+ E IKV + ED E
Sbjct: 382 YRLTYYDVDEMLQWGIKNEPEIRILAETAKKRHLWRQSQGAINIKMPEAVIKVKS-ED-E 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
+I L ++ + +LV+EMMIL GE Y + L +P+RGQPQ LP
Sbjct: 440 IVIELI---ESSRSRQLVAEMMILAGEVAGRYCQEHGLPVPFRGQPQPELPPDEELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ A+ + M + I P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 497 PGPVRACALRRCMPRSEIG-TIPNRHASLGLNTYTQVTSPIRRYTDLLTHFQL 548
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+E + +R LAV RP+GKK+WMV D G S I+PQ+V + V G + +
Sbjct: 1 MEKGKLIEIRVQGER-RLAVVDRPEGKKDWMVIDAGGQSHKIRPQRVEYEVEG-GPYSPQ 58
Query: 170 DISNFLQKAEDNL 182
+I FL+ E L
Sbjct: 59 EIPQFLRDVEPYL 71
>gi|427718659|ref|YP_007066653.1| exoribonuclease II [Calothrix sp. PCC 7507]
gi|427351095|gb|AFY33819.1| Exoribonuclease II [Calothrix sp. PCC 7507]
Length = 683
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 175/293 (59%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHLKVY ID + E+DD LS L DGR +++H+ADPT+ + P D +A K
Sbjct: 278 TRLDLTHLKVYTIDDESTTEIDDGLSWESLPDGREHLWVHIADPTRLLAPEDDLDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG VC A++ VVL G++AE+++ S IKPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGRVCCALSFGVVLDQTGAVAEFNIYPSFIKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E+ ++ A R WR QGAI E IKV E
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIAAIALWAKRRRNWRYDQGAISINMPEAMIKVKGDE--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I++ + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ +
Sbjct: 455 --ISIDILDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLQLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLNTYTQATSPIRRYSDLLTHFQL 563
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G + +
Sbjct: 1 MDKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQITYTVNG-QTYKPT 58
Query: 170 DISNFLQKAEDNL 182
+I +FL++ + L
Sbjct: 59 EIDHFLEQVKPYL 71
>gi|428779631|ref|YP_007171417.1| exoribonuclease R [Dactylococcopsis salina PCC 8305]
gi|428693910|gb|AFZ50060.1| exoribonuclease R [Dactylococcopsis salina PCC 8305]
Length = 667
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 172/293 (58%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTH KVY ID + E+DD +S L DGR +++IH+ADPT+ + P D++A +
Sbjct: 262 DRLDLTHQKVYTIDDESTKEIDDGVSVEILPDGRQQIWIHIADPTRLVRPDDELDQEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+VC A++ +V+L DG++AEY++ + +KPT
Sbjct: 322 RSTSLYLPTGMISMFPSELATGPMSLIQGKVCPAMSFAVILAEDGAVAEYTIAATWVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY+ E+L L + E E+ L+ A R QWR QG+I+ + E IKV +
Sbjct: 382 YRLTYDDVDEMLELGVTAEPEIAQLAHWAQQRKQWRQSQGSINISLPEAVIKVN-----Q 436
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ A LV+EMMIL GE + + +P+R QPQ + LP
Sbjct: 437 EEEVEIELLEESQARELVAEMMILAGEVAGRFAVDKEIPIPFRSQPQPELPPEETLLQLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRS A+ M + + P RH LGL Y Q TSPIRRY+DLL+H+Q+
Sbjct: 497 AGPVRSCALRGCMPRSEMG-TTPARHAGLGLEVYTQVTSPIRRYVDLLSHFQI 548
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK +R LAVA+RP+GKK+W+V DQ G S ++ P+QV + V G K +
Sbjct: 1 MEKGTLIEFKAQGER-RLAVAERPEGKKHWIVLDQWGQSHTLHPRQVEYEVGGDPK-RPQ 58
Query: 170 DISNFLQKAEDNL 182
+I +FL + E L
Sbjct: 59 EIPSFLGEVESYL 71
>gi|440684659|ref|YP_007159454.1| Exoribonuclease II [Anabaena cylindrica PCC 7122]
gi|428681778|gb|AFZ60544.1| Exoribonuclease II [Anabaena cylindrica PCC 7122]
Length = 685
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 129/294 (43%), Positives = 176/294 (59%), Gaps = 8/294 (2%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+NR DLTHLKVY ID + E+DD LS L DG+ ++++H+ADPT+++ P D +A
Sbjct: 277 VNRLDLTHLKVYTIDDESTTEIDDGLSWELLPDGQERLWVHIADPTRWLIPEDELDLEAR 336
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG++V+LPT PMFPE LA MSL QG++C A++ +VL+ GS+ +YS+ +++KP
Sbjct: 337 KRGSTVYLPTGMIPMFPEVLATGPMSLVQGKICCALSFGIVLNQTGSVEDYSIHPTLMKP 396
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L +E E E+ ++ A R WR QGAI E IKV + +
Sbjct: 397 TYRLTYEDVDEMLELGVEAEPEIAAIANLAKRRKTWRYNQGAISINMPEAMIKVKDDDIS 456
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG-QPQSNIDVSAFAHL 421
I++ Q LV+EMMIL GE A YG +N+ LP+RG L
Sbjct: 457 IDILDDSSSRQ------LVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLQL 510
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P G VRS A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 511 PPGFVRSCAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+ KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T++V G + +
Sbjct: 1 MDKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQLTYIVNG-QSYQPS 58
Query: 170 DISNFLQK 177
+I+NFL++
Sbjct: 59 EITNFLEQ 66
>gi|298493171|ref|YP_003723348.1| exoribonuclease II ['Nostoc azollae' 0708]
gi|298235089|gb|ADI66225.1| Exoribonuclease II ['Nostoc azollae' 0708]
Length = 683
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 178/293 (60%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + E+DD LS L DG+ ++++H+ADPT+++ P D +A K
Sbjct: 278 NRLDLTHLKVYTIDDESTTEIDDGLSWEVLLDGQERLWVHIADPTRWLMPEDELDLEARK 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++V+LPT PMFPE LA MSL QG++C +++ +VL G++ +Y + S++KPT
Sbjct: 338 RGSTVYLPTGMIPMFPEVLATGPMSLVQGKICYSLSFGIVLDETGAVEDYCIHASLMKPT 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L +E E E+ ++ A R WR QGAI E IKV +
Sbjct: 398 YRLTYEDVDEMLELGVEAEPEIAAIANWAKKRKTWRYNQGAISINMPEAMIKVKGDD--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ + + D + + +LV+EMMIL GE A YG +N+ LP+RGQPQ + L
Sbjct: 455 --VTIDILDDSS-SRQLVAEMMILAGEVAARYGQTHNIPLPFRGQPQPELPPEEELLLLP 511
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + PVRH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 512 AGFVRACAMRRCMPKSEMSI-TPVRHAGLGLDTYTQATSPIRRYSDLLTHFQL 563
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ DR L V RPDGK W V D+ G S S+ P+Q+T+ V G E +
Sbjct: 1 MEKGTLVEFRVQGDR-RLGVVDRPDGKTRWFVVDERGQSHSLAPRQLTYTVNG-ETYKPS 58
Query: 170 DISNFLQKAEDNL 182
DI+ F ++ + L
Sbjct: 59 DIAQFSEQVKPYL 71
>gi|428207110|ref|YP_007091463.1| exoribonuclease II [Chroococcidiopsis thermalis PCC 7203]
gi|428009031|gb|AFY87594.1| Exoribonuclease II [Chroococcidiopsis thermalis PCC 7203]
Length = 687
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 130/294 (44%), Positives = 176/294 (59%), Gaps = 10/294 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHLKVY ID E+DD +S L DGR +++IH+ADPT+++ P D +A +
Sbjct: 280 QRLDLTHLKVYTIDDQSTSEIDDGVSWEVLADGRERLWIHIADPTRWLIPEDELDLEARR 339
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+++LPT MFP LA MSL QG+VC A++ V+L + G++ EY++ S+IKPT
Sbjct: 340 RGTTMYLPTGMSSMFPVALATGPMSLIQGQVCCALSFGVILDAAGAVQEYTIHASLIKPT 399
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ ++ A R WR QGAI + ET IKV + E
Sbjct: 400 YRLTYEDVDEMLDLGVQAEPEIAAIANWARCRQAWRQSQGAISISLPETAIKVKDDEITI 459
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
++N D + R LV+EMMIL GE YG +NLALP+RGQPQ +
Sbjct: 460 EVLN-------DSSSRQLVAEMMILAGEVAGRYGQAHNLALPFRGQPQPELPPEEELLQL 512
Query: 423 E-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 513 PAGFVRACAMRRCMPKSEMSI-TPSRHAGLGLEMYTQATSPIRRYSDLLTHFQL 565
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
+ KG+L+EF+ DR L V RPDGK W V D G S S+ P+Q T+ + G + +
Sbjct: 2 TIDKGMLVEFRVQGDR-RLGVVDRPDGKTRWFVIDDRGQSHSLAPRQFTYEIRG-QSYKP 59
Query: 169 KDISNFLQKAEDNL 182
DI+NFL + + L
Sbjct: 60 SDIANFLAEVQPYL 73
>gi|16329795|ref|NP_440523.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|383321537|ref|YP_005382390.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324707|ref|YP_005385560.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490591|ref|YP_005408267.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384435857|ref|YP_005650581.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|451813955|ref|YP_007450407.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|7674330|sp|P73177.1|RN2H_SYNY3 RecName: Full=Uncharacterized ribonuclease sll1290
gi|1652280|dbj|BAA17203.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|339272889|dbj|BAK49376.1| ribonuclease II [Synechocystis sp. PCC 6803]
gi|359270856|dbj|BAL28375.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274027|dbj|BAL31545.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277197|dbj|BAL34714.1| ribonuclease II [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451779924|gb|AGF50893.1| ribonuclease II [Synechocystis sp. PCC 6803]
Length = 666
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LK Y ID + E+DD LS L DG +++IHVADPT+ + P D +A K
Sbjct: 262 ERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWIHVADPTRLLSPNDELDLEARK 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+ C A++ V L G++ ++++ S +KPT
Sbjct: 322 RSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL +L+EAA R QWR QGAI E IKV E+
Sbjct: 382 YRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE-- 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ +Y+++ + + +LV+EMMIL GE + + + +P+RGQPQ + LP
Sbjct: 440 --VQIYLQETSV-SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DL+ H+Q+
Sbjct: 497 PGPVRECAVRRCMPRSEVGI-TPSRHASLGLDLYSQATSPIRRYTDLITHFQM 548
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RPDGKK+W+V DQ G S +KPQ+V + +PG +
Sbjct: 1 MEKGQLIEFRHQGER-RLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPG-GPYTVD 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
D+ +FL + + L D + L+V + + ++E + + A A+ L
Sbjct: 59 DLPSFLGEVDQYL----DPSSLEVAWELLIEEGESITPADLALLL 99
>gi|407957682|dbj|BAM50922.1| ribonuclease II [Bacillus subtilis BEST7613]
Length = 650
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LK Y ID + E+DD LS L DG +++IHVADPT+ + P D +A K
Sbjct: 246 ERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWIHVADPTRLLSPNDELDLEARK 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+ C A++ V L G++ ++++ S +KPT
Sbjct: 306 RSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPT 365
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL +L+EAA R QWR QGAI E IKV E+
Sbjct: 366 YRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE-- 423
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ +Y+++ + + +LV+EMMIL GE + + + +P+RGQPQ + LP
Sbjct: 424 --VQIYLQETSV-SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLP 480
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DL+ H+Q+
Sbjct: 481 PGPVRECAVRRCMPRSEVGI-TPSRHASLGLDLYSQATSPIRRYTDLITHFQM 532
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 127 LAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRK 186
+AV RPDGKK+W+V DQ G S +KPQ+V + +PG + D+ +FL + + L
Sbjct: 1 MAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPG-GPYTVDDLPSFLGEVDQYL---- 55
Query: 187 DLTHLKV-YAIDVDEADELDDALSAMRL 213
D + L+V + + ++E + + A A+ L
Sbjct: 56 DPSSLEVAWELLIEEGESITPADLALLL 83
>gi|220906337|ref|YP_002481648.1| exoribonuclease II [Cyanothece sp. PCC 7425]
gi|219862948|gb|ACL43287.1| Exoribonuclease II [Cyanothece sp. PCC 7425]
Length = 671
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 170/293 (58%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R +LT LKVY ID + E+DD LS L +G+ +++IH+ADP++++ PG D +A +
Sbjct: 265 HRVNLTGLKVYTIDDESTREIDDGLSLEFLPEGQQRLWIHIADPSRWLTPGDELDLEARR 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT PMFP +LA MSL QG+VC A++ + L G++ +Y + S IKPT
Sbjct: 325 RSTTIYLPTGMIPMFPPELATGPMSLTQGQVCCALSFGITLDKTGAVVDYQLAPSQIKPT 384
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL ++ A R WR QGAI E IKV E
Sbjct: 385 YRLTYEDVDEMLELGIDAEPELLAIAHWAKQRRDWRAAQGAIMINMPEASIKVIGEEVQI 444
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
++ Q PA LV+EMMIL GE A + + L +P+R QPQ + L
Sbjct: 445 DVL------QDSPARSLVAEMMILTGEVAARFAQEHELPIPFRFQPQPELPSEEELLQLD 498
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR AI + M + + P RH LGL Y Q TSPIRRY DL+AH+Q+
Sbjct: 499 PGPVRDCAIRRCMPRSEVG-TVPARHASLGLDLYSQVTSPIRRYTDLIAHWQI 550
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ R LAVA+RP+GKK+W+V DQ+ S ++ P+++T+ V G + + +
Sbjct: 1 MEKGTLVEFRLQGQR-RLAVAERPEGKKHWIVVDQHQQSHTLHPREITYEVSG-QNYRPQ 58
Query: 170 DISNFLQ 176
DI++F Q
Sbjct: 59 DIASFCQ 65
>gi|86609985|ref|YP_478747.1| VacB/RNB family exoribonuclease [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558527|gb|ABD03484.1| exoribonuclease, VacB/RNB family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 686
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 177/292 (60%), Gaps = 10/292 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL Y ID ++DDALS D +K++IH+ADP+ +++ G D +A KR
Sbjct: 283 RQDLTHLHTYTIDDASTRDIDDALSVEFWSDDAVKLWIHIADPSCWVQWGDPLDLEARKR 342
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+LP PMFP +L+ MSL QGEV A++ ++L SDG I + + S IK TY
Sbjct: 343 GTSVYLPERVIPMFPPELSTGPMSLVQGEVRPALSFGILLGSDGQIRDSEICLSQIKVTY 402
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE A E+L L EA+L ++ AA R WR+ QGAI E IKV D P
Sbjct: 403 RLTYEDADEMLELG--AEAQLTAIARAAQWRYGWRMAQGAIQIGLPEQDIKVI---DEIP 457
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLPE 423
+ + +ED PA ++V+EMM+L GE A + S N + +PYR QP ++ P+
Sbjct: 458 HLRV-IED--TPARQMVAEMMVLTGEVAARFASQNGIPVPYRLQPAPDLPPPEVLDRYPQ 514
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRS AI++ + A + +P RH LGL Y Q TSPIRRY+DL+AHYQ+
Sbjct: 515 GPVRSFAIMRCLSRAEVA-TQPGRHTGLGLDAYCQVTSPIRRYLDLVAHYQI 565
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ ++DRVL AV Q +GKKN ++ +G S+ P+Q+TF + G F
Sbjct: 1 MEKGTLVEFRYNNDRVL-AVVQGTEGKKNLLLGVPSGQVHSVHPRQITFALNGGSSFTAS 59
Query: 170 DISNFLQKAEDNL 182
DI F Q + L
Sbjct: 60 DIPGFWQAVQAKL 72
>gi|428204483|ref|YP_007083072.1| exoribonuclease R [Pleurocapsa sp. PCC 7327]
gi|427981915|gb|AFY79515.1| exoribonuclease R [Pleurocapsa sp. PCC 7327]
Length = 666
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/293 (45%), Positives = 182/293 (62%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHLKVY ID + +E+DD LS L+ G+++++IH+ADP++ + PG D +A +
Sbjct: 262 NRLDLTHLKVYTIDDESTEEIDDGLSVEFLKHGKVRLWIHIADPSRLVTPGDELDLEARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP LA + MSL QG++C A++ VVL G++ +YS+ S+IKPT
Sbjct: 322 RSTSLYLPTGMISMFPTVLATDPMSLVQGKLCPALSFGVVLDETGTVEDYSIYTSLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E E+ L+ A R QWR QG+ID E+ IKV D E
Sbjct: 382 YRLTYEDVDEMLELGIQAEPEIAALATWAQRRQQWRRSQGSIDIQMPESVIKVKA--DDE 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+I L + A +LV+EMMIL GE Y +NL +P+RGQPQ + L
Sbjct: 440 IVIELL---EVSRARQLVAEMMILAGEVAGRYCQEHNLPVPFRGQPQPELPPEEELLLLP 496
Query: 424 -GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ A+ + M + I P+RH LGL Y Q TSPIRRY DLLAH+Q+
Sbjct: 497 AGPVRACALRRCMPRSEIGI-TPIRHASLGLDTYTQVTSPIRRYTDLLAHFQL 548
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF++ +R LAV RP+GKK+W+V D+ G + I+PQQV + + G +
Sbjct: 1 MEKGKLIEFRRQGER-RLAVTDRPEGKKDWIVLDEGGVAHKIRPQQVEYEIDG-GSYKPS 58
Query: 170 DISNFLQKAEDNL 182
DI +F+Q+ + L
Sbjct: 59 DIPSFIQQVKPYL 71
>gi|443328119|ref|ZP_21056722.1| exoribonuclease R [Xenococcus sp. PCC 7305]
gi|442792316|gb|ELS01800.1| exoribonuclease R [Xenococcus sp. PCC 7305]
Length = 669
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 135/294 (45%), Positives = 178/294 (60%), Gaps = 8/294 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI-KVYIHVADPTKYIEPGSLSDKDAM 242
+R DLTHLKVY ID + E+DD LS + + + +++IH+ADPT+ + PG D +A
Sbjct: 262 DRLDLTHLKVYTIDDESTTEIDDGLSVEYIGEAKTPRLWIHIADPTRLLTPGDELDLEAR 321
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R TS++LPT PMFP +LA MSL QG+ C A++ V L G+IAEY++ + IKP
Sbjct: 322 RRSTSLYLPTGMVPMFPSELATGPMSLVQGQDCCALSFGVTLDETGAIAEYTIHPTKIKP 381
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY LTYE E+L L L EAEL L+ AA R WR QG+I E IKV E+
Sbjct: 382 TYRLTYEDVDEMLQLGLTNEAELAELAAAAKARQAWRKSQGSIQIKMPEASIKVK--ENE 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
E I+L +E+ A + LV+EMMIL GE YG + L LP+RGQPQ + L
Sbjct: 440 EITIDL-LEESA--SRHLVAEMMILAGEITGRYGKEHGLPLPFRGQPQPELPPEEELMLL 496
Query: 423 E-GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P+RH LGL YVQ TSPIRRY DLL H+Q+
Sbjct: 497 PAGPVRYCALRRCMPRSEMSI-NPLRHASLGLDTYVQVTSPIRRYTDLLTHFQL 549
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAVA+RP+GKK+W+V D G S I+PQ+V + V G +
Sbjct: 1 MEKGTLIEFRLQGER-RLAVAERPEGKKDWIVVDSQGQSHKIRPQRVEYTVGG-GPYQSS 58
Query: 170 DISNFLQKAE 179
DI +F++ +
Sbjct: 59 DIPSFVETCQ 68
>gi|86605897|ref|YP_474660.1| VacB/RNB family exoribonuclease [Synechococcus sp. JA-3-3Ab]
gi|86554439|gb|ABC99397.1| exoribonuclease, VacB/RNB family [Synechococcus sp. JA-3-3Ab]
Length = 683
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/292 (43%), Positives = 176/292 (60%), Gaps = 10/292 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL Y ID ++DDALS D +K++IH+ADP+ +++ G D +A KR
Sbjct: 283 RRDLTHLHTYTIDDASTRDIDDALSVEFESDDEVKLWIHIADPSCWVQWGDPLDLEARKR 342
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+LP PMFP +L+ MSL QGEV A++ + L SDG++ +Y + S I+ Y
Sbjct: 343 GTSVYLPERVIPMFPSELSTGPMSLVQGEVRPALSFGIRLGSDGAVRDYEICLSQIRVNY 402
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A E+L L EA+L ++ AA R WRL QGAI E IKV D P
Sbjct: 403 RLTYDDADEMLELG--AEAQLTAIARAARWRYAWRLAQGAIPIGLPEQDIKVI---DEIP 457
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL-PE 423
+ + +ED PA ++V+EMM+L GE A + N + +PYR QP + L P+
Sbjct: 458 HLRV-IED--TPARQMVAEMMVLAGEVAARFARQNGIPVPYRLQPAPELPPPEVLDLYPQ 514
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVRS AI++ + A + +P RH LGL Y Q TSPIRRY+DL+AHYQ+
Sbjct: 515 GPVRSFAIMRCLSRAEVA-TQPGRHTGLGLDAYCQVTSPIRRYLDLVAHYQI 565
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +++RVL AV + +GKKN ++ +G S+ P+Q+TF + G F
Sbjct: 1 MEKGTLVEFRHNNERVL-AVVEGTEGKKNLLLGVASGQVHSVHPRQITFALNGNSSFTVS 59
Query: 170 DISNFLQKAEDNL 182
DI F Q + L
Sbjct: 60 DIPGFWQAVQAKL 72
>gi|158337924|ref|YP_001519100.1| exoribonuclease II [Acaryochloris marina MBIC11017]
gi|158308165|gb|ABW29782.1| exoribonuclease II [Acaryochloris marina MBIC11017]
Length = 680
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 170/293 (58%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LKVY ID + E+DD LS L DG+ +V++H+ADP+++I G D++A +
Sbjct: 271 ERHDLTSLKVYTIDDESTSEIDDGLSLEFLPDGKQRVWVHIADPSRWITLGDELDQEAQR 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP +L+ MSL QG++C A++ V+L ++G+I Y + S ++PT
Sbjct: 331 RGTTVYLPTGMIPMFPTELSTGPMSLVQGQICCALSFGVILTAEGAIESYEIRCSQVQPT 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L L +E E+EL L++ A R WR QGAI E+ IKV E
Sbjct: 391 YRLTYADVDEMLELGVEAESELLALAQWAKQRQAWRKSQGAISIQMPESSIKVEG----E 446
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNIDVSAFAHLP 422
+ + D + A LV+EMMIL GE A YG N+L LP+R L
Sbjct: 447 KVDIQVLYDSS--ARNLVAEMMILTGEVAARYGQDNDLPLPFRHQPQPELPPEEELLQLA 504
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR AI M + + P RH LGL Y Q TSPIRRY DL+AH+Q+
Sbjct: 505 PGFVRYCAIRSCMPRSEVSI-SPARHASLGLDCYCQVTSPIRRYADLVAHFQI 556
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 110 LQKGLLLEFKKDSD------RVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGV 163
++KG L+EFK+ D L V RP+GKKNW+V DQ G + ++ P+Q TFVV G
Sbjct: 1 MEKGTLIEFKRRGDCAEGQRPFQLGVLDRPEGKKNWVVVDQTGQTHTLHPRQFTFVVSG- 59
Query: 164 EKFDHKDISNFLQKAE 179
+ + +I+ F +AE
Sbjct: 60 KTYTPSEIAEFQSEAE 75
>gi|67924092|ref|ZP_00517539.1| Exoribonuclease II [Crocosphaera watsonii WH 8501]
gi|416401710|ref|ZP_11687276.1| ribonuclease II [Crocosphaera watsonii WH 0003]
gi|67854053|gb|EAM49365.1| Exoribonuclease II [Crocosphaera watsonii WH 8501]
gi|357262011|gb|EHJ11211.1| ribonuclease II [Crocosphaera watsonii WH 0003]
Length = 670
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/293 (44%), Positives = 181/293 (61%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT LKVY ID + +E+DD LS L++ ++K++IH+ADPT+ + PG D +A K
Sbjct: 262 DRLDLTRLKVYTIDDESTEEIDDGLSVEYLENDQVKLWIHIADPTRLVTPGDELDLEARK 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R T+++LPT MFP +LA MSL QG++C A++ V+L S+G++ +YS+ S+IKPT
Sbjct: 322 RSTTLYLPTGMISMFPLELAAGPMSLCQGQLCAALSFGVILDSEGAVVDYSIHASLIKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L L + EAEL +L+EAA R QWR QG+I E IKV + D E
Sbjct: 382 YRLTYHDVDEMLQLGITAEAELAVLAEAAKKRHQWRQSQGSITIKMPEAIIKVKS--DEE 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ-SNIDVSAFAHLP 422
I L + + +LV+EMMIL GE TY + + +P+RGQPQ LP
Sbjct: 440 ISIELL---ETSISRQLVAEMMILAGEVAGTYCGEHGIPVPFRGQPQPELPPEEELLLLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR+ A+ + M + + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 497 PGPVRACALRRCMPRSEMG-TLPSRHASLGLDSYTQVTSPIRRYTDLLTHFQI 548
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ + + LAV RP+GKK+WMV D G S ++PQ+V + VPG ++
Sbjct: 1 MEKGKLIEFRLNGE-YRLAVVDRPEGKKDWMVIDGQGNSHKLRPQRVDYEVPG-GPYNSD 58
Query: 170 DISNFLQKAEDNL 182
+IS FLQ+ + L
Sbjct: 59 EISQFLQEIQPYL 71
>gi|297597941|ref|NP_001044770.2| Os01g0841800 [Oryza sativa Japonica Group]
gi|255673863|dbj|BAF06684.2| Os01g0841800 [Oryza sativa Japonica Group]
Length = 548
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 138/158 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 375 RKDLSTLKVYAIDVDEADELDDALSAARLPDGRIKVWIHVADPTSLVQPRSIIDREAMHR 434
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT+PMFPE+LAM MSL+QG C +VTVSV+L DGSIAEYS++NSIIKPTY
Sbjct: 435 GTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVSVILQPDGSIAEYSIENSIIKPTY 494
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ 342
MLTYESATELL++NLEEE EL+IL EAA+LR QWR Q
Sbjct: 495 MLTYESATELLYMNLEEEEELRILQEAASLRAQWRRSQ 532
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 6/157 (3%)
Query: 48 RLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLE 106
R + R+ F G + VH LVDSV++EL + R R RV AK+ + + EL ++K++
Sbjct: 35 RPDSARAGWHFSLYGGCRGRQVHGLVDSVLEELRSQR-RGRVSAKIGLQGTKELSDNKID 93
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+ LQKGLLLEF+KDS+R LLAV +RPDGKKNW V DQNG SIKPQQVT+V+PG+ +
Sbjct: 94 KRTLQKGLLLEFQKDSERFLLAVVERPDGKKNWKVTDQNGILSSIKPQQVTYVIPGIINY 153
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
+H I F++KA+D L D T L+ +++ E D+
Sbjct: 154 NHSRIDEFIKKAQDLL----DPTVLECAWMELSENDK 186
>gi|56784235|dbj|BAD81730.1| ribonuclease II-like protein [Oryza sativa Japonica Group]
Length = 543
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 138/158 (87%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 370 RKDLSTLKVYAIDVDEADELDDALSAARLPDGRIKVWIHVADPTSLVQPRSIIDREAMHR 429
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPTAT+PMFPE+LAM MSL+QG C +VTVSV+L DGSIAEYS++NSIIKPTY
Sbjct: 430 GTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVSVILQPDGSIAEYSIENSIIKPTY 489
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ 342
MLTYESATELL++NLEEE EL+IL EAA+LR QWR Q
Sbjct: 490 MLTYESATELLYMNLEEEEELRILQEAASLRAQWRRSQ 527
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%), Gaps = 6/157 (3%)
Query: 48 RLPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLE 106
R + R+ F G + VH LVDSV++EL + R R RV AK+ + + EL ++K++
Sbjct: 30 RPDSARAGWHFSLYGGCRGRQVHGLVDSVLEELRSQR-RGRVSAKIGLQGTKELSDNKID 88
Query: 107 NQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
+ LQKGLLLEF+KDS+R LLAV +RPDGKKNW V DQNG SIKPQQVT+V+PG+ +
Sbjct: 89 KRTLQKGLLLEFQKDSERFLLAVVERPDGKKNWKVTDQNGILSSIKPQQVTYVIPGIINY 148
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADE 203
+H I F++KA+D L D T L+ +++ E D+
Sbjct: 149 NHSRIDEFIKKAQDLL----DPTVLECAWMELSENDK 181
>gi|428769100|ref|YP_007160890.1| exoribonuclease II [Cyanobacterium aponinum PCC 10605]
gi|428683379|gb|AFZ52846.1| Exoribonuclease II [Cyanobacterium aponinum PCC 10605]
Length = 668
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 182/324 (56%), Gaps = 13/324 (4%)
Query: 153 PQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMR 212
PQQV V + D + F+ K L DLTH K+Y ID + E+DD +S
Sbjct: 241 PQQVYEVAHSI--LDRISTNEFIDKDSQRL----DLTHHKIYTIDDESTTEIDDGISLEF 294
Query: 213 LQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQG 272
L +G +++IH+ADPT+ I P D +A +R TS++LPT PMFP +LA MSL QG
Sbjct: 295 LDNGLARLWIHIADPTRLINPDDPLDLEARRRSTSLYLPTGMVPMFPSELATGPMSLVQG 354
Query: 273 EVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAA 332
++C A++ VVL +G++ +Y + ++++KPTY LTY E+L LN++ E E+ +++ A
Sbjct: 355 QICPALSFGVVLDEEGAVKDYEIHSTLVKPTYRLTYHDVDEMLTLNIQGEEEIIRIAQEA 414
Query: 333 ALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAI 392
R QWR G++ + E IKV N E E I L + + +V+EMMIL GE
Sbjct: 415 KKREQWRKNNGSVMISMPEAIIKVKNEE--EVSIELL---EMSRSRLVVAEMMILAGEVA 469
Query: 393 ATYGSFNNLALPYRG-QPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
Y +N+ +P+RG LP GPVRS A+ + M + P RH L
Sbjct: 470 GKYCQEHNIPVPFRGQPQPELPPEEELILLPPGPVRSCALRRCMPKSETGL-TPSRHASL 528
Query: 452 GLPGYVQFTSPIRRYMDLLAHYQV 475
GL Y Q TSPIRRY DLL+H+Q+
Sbjct: 529 GLETYTQVTSPIRRYTDLLSHFQI 552
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EFK + DR L V ++P+GKK+W+ D+NG S ++PQ+V F+V G E F +
Sbjct: 1 MEKGTLVEFKVNGDR-RLGVIEKPEGKKDWIAIDENGNSHKVRPQKVDFLVEG-ESFKYT 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRLQDGRIKVYIHVA 225
DI F+++ +L D + L++ + + ++EA + A A + + V+ + A
Sbjct: 59 DIPRFVKEVTPHL----DASSLEIAWELLIEEATPVTPAELATLIFEEETPVFCYAA 111
>gi|359463693|ref|ZP_09252256.1| ribonuclease II [Acaryochloris sp. CCMEE 5410]
Length = 680
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 168/293 (57%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LKVY ID + E+DD LS L G+ +V++H+ADP+++I G D++A +
Sbjct: 271 ERHDLTSLKVYTIDDESTSEIDDGLSLEFLPGGKQRVWVHIADPSRWITLGDELDQEAQR 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+LPT PMFP +L+ MSL QG++C A++ V+L ++G+I Y + S ++PT
Sbjct: 331 RGTTVYLPTGMIPMFPTELSTGPMSLVQGQICCALSFGVILTAEGAIESYEIRCSQVQPT 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY E+L L +E E+EL L+ A R WR QGAI E+ IKV E
Sbjct: 391 YRLTYADVDEMLELGVEAESELLALAHWAKQRQAWRKSQGAISIQMPESSIKVEG----E 446
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNIDVSAFAHLP 422
+ + D + A LV+EMMIL GE A YG N+L LP+R L
Sbjct: 447 KVDIQVLYDSS--ARNLVAEMMILTGEVAARYGQDNDLPLPFRHQPQPELPPEEELLQLA 504
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR AI M + + P RH LGL Y Q TSPIRRY DL+AH+Q+
Sbjct: 505 PGFVRYCAIRSCMPRSEVSI-SPARHASLGLDCYCQVTSPIRRYADLVAHFQI 556
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 110 LQKGLLLEFKKDSD------RVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGV 163
++KG L+EFK+ D L V RP+GKKNW+V DQ G + ++ P+Q TFVV G
Sbjct: 1 MEKGTLIEFKRRGDCAEGQRPFQLGVLDRPEGKKNWVVVDQTGQTHTLHPRQFTFVVSG- 59
Query: 164 EKFDHKDISNFLQKAE 179
+ + +I+ F +AE
Sbjct: 60 KTYTPSEIAEFQLEAE 75
>gi|384248905|gb|EIE22388.1| RNB-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 929
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 168/294 (57%), Gaps = 3/294 (1%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLTHL V ID E+DD LS L+ GR ++++HVADPT+YI P D +A +
Sbjct: 454 NRLDLTHLPVVTIDDAGTTEVDDGLSVEFLEGGRARLWVHVADPTRYIRPEDTLDLEARR 513
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++LPT MFP +LA SLRQGE C A+++S L DG ++ +SV + I PT
Sbjct: 514 RGSTMYLPTGAIFMFPGQLATGPFSLRQGEPCCALSISAELSPDGELSAHSVAATRITPT 573
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+ +TY+ + + E +L L +A+ R WR +QGA E ++VA+P P
Sbjct: 574 HRMTYDQVDAAI-ASGELPPDLCALLQASEARAAWRTRQGAASITLDECEVRVADPRAPN 632
Query: 364 PIINL-YVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHL 421
P + L ++ A LVSEMMI+ G+ AT G L LPYRGQ ++ + +
Sbjct: 633 PRVTLERLQTGTSAARTLVSEMMIMAGQVAATVGQEAGLPLPYRGQAKAVLPTEEELKGV 692
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
PEGP R+ + M + H LGLP YVQ TSPIRRY D+LAH+Q+
Sbjct: 693 PEGPCRAVLLRSRMVRGIATTHDALPHAGLGLPAYVQVTSPIRRYSDMLAHWQL 746
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 112 KGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDI 171
+G L+EF+KDS + LA+ + DGK+NW D G S++PQQV +V+PG E + +D+
Sbjct: 181 EGRLIEFQKDS-KSGLALLLKKDGKRNWSAVDTRGTVYSLRPQQVAYVLPG-EGYTQQDL 238
Query: 172 SNFLQKAE 179
A+
Sbjct: 239 ETISTAAQ 246
>gi|414879755|tpg|DAA56886.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 543
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/168 (70%), Positives = 142/168 (84%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL+ LKVYAIDVDEADELDDALSA RL DGRIKV+IHVADPT ++P S+ D++AM R
Sbjct: 374 RKDLSTLKVYAIDVDEADELDDALSATRLPDGRIKVWIHVADPTCLVKPHSIIDREAMHR 433
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS+FLPT T+PMFPE+LAM MSL+QG+ C +VTVSV+L+ DGSIAEY+++NS+IKPTY
Sbjct: 434 GTSIFLPTTTFPMFPERLAMNSMSLQQGKECKSVTVSVILNLDGSIAEYTLENSVIKPTY 493
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
MLTYESATELL++NLEEE EL+IL EAA +R QWR Q +A L T
Sbjct: 494 MLTYESATELLYMNLEEEEELRILQEAARIREQWRRSQVCAKSALLST 541
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFK 119
R G +S HS+VD VM+EL + R+ AK+ + + EL ++K+ + LQKGLLLEF+
Sbjct: 47 RGGCRSRLAHSIVDLVMEELRSRRRVRVS-AKIGLQGTKELPDNKIVKRTLQKGLLLEFQ 105
Query: 120 KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
KD +R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +
Sbjct: 106 KDPERSLLAVVERPDGKKNWMVTDQNGVMSSIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ 165
Query: 180 DNLLNRKDLTHLKVYAIDVDEADE 203
NLL D T L+ +++ E D+
Sbjct: 166 -NLL---DPTILECAWMELSEKDK 185
>gi|22298194|ref|NP_681441.1| ribonuclease II [Thermosynechococcus elongatus BP-1]
gi|22294373|dbj|BAC08203.1| ribonuclease II [Thermosynechococcus elongatus BP-1]
Length = 674
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 169/293 (57%), Gaps = 11/293 (3%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHLKVY ID + E+DD LS + D R K++IH+ADPT+++ L D++A +R
Sbjct: 266 RRDLTHLKVYTIDDESTQEIDDGLSLEVIGD-RQKLWIHIADPTRWVMVDDLLDQEARRR 324
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
T+V+LPT PMFP +LA MSL G+ C A++ ++L G + EY + S I+PTY
Sbjct: 325 ATTVYLPTGMIPMFPTELATGPMSLVAGQTCCALSFGILLADSGEVLEYEICPSWIRPTY 384
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-DPE 363
L+Y+ +L + EA+L +++ R +WR Q+GAI E IKVA E +
Sbjct: 385 RLSYDDVDMILEQGVTGEADLLAIAQWGQRRSEWRRQRGAIRINIPEPNIKVAGEEVEIS 444
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLP 422
P+ + PA +LV+EMMIL GE A +G+ + LP+R Q P LP
Sbjct: 445 PLHD-------SPARQLVAEMMILAGEVAAHFGAREGIPLPFRCQSPPELPSEEELLQLP 497
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G VR AI + M + + +P H LGL Y Q TSPIRRY DLLAH Q+
Sbjct: 498 AGIVRDCAIRRCMPRSEMST-QPNPHASLGLDAYCQVTSPIRRYTDLLAHRQI 549
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ ++ R LAV RP+GKK+W+ D++ + +I P+Q+TF VP E+F +
Sbjct: 1 MEKGTLIEFRVNNQR-RLAVIDRPEGKKHWIAIDEHLQTHTIHPRQLTFTVPE-ERFRPQ 58
Query: 170 DISNFLQKAE 179
+I+ F Q+ +
Sbjct: 59 EIATFWQQVQ 68
>gi|33865758|ref|NP_897317.1| ribonuclease II [Synechococcus sp. WH 8102]
gi|33632928|emb|CAE07739.1| probable ribonuclease II [Synechococcus sp. WH 8102]
Length = 682
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/319 (39%), Positives = 174/319 (54%), Gaps = 20/319 (6%)
Query: 171 ISNFLQKAEDNLL---NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
I L +A D+ R DLT +VY +D E+DD L A+ DG ++IH+ADP
Sbjct: 269 IDELLARAADSCSGDDTRVDLTAQRVYTLDDSSTKEIDDGL-ALEPGDGGPWIWIHIADP 327
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ IEP S D++A +R TS++L PM P KLA E SLR G+ C A++V V+L +
Sbjct: 328 ARLIEPDSPLDREARRRATSLYLANGVLPMLPLKLATEIFSLRAGQRCPALSVGVLLDDE 387
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDT 347
G++ S S ++P Y LTYE EL+ L + +L LS R WR ++GAI+
Sbjct: 388 GAVVASSCQRSWVQPRYRLTYEDGDELIELVPPGDEDLAQLSALLKRRFNWRQRRGAINF 447
Query: 348 ATLETRIK--VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E R + A PE L V D + PA +VSE M+L G A+A G +ALPY
Sbjct: 448 ERQEGRFRRGAAGPE-------LQVIDPS-PARVMVSEAMLLMGAAVAEIGRREGMALPY 499
Query: 406 RGQPQSNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464
R QP + + A +PEGP R +A+ + + + + P+ H LGL YVQ TSPIR
Sbjct: 500 RSQPPAELPSAQELAEIPEGPARDAAVKRCL-SRGLQGTSPMPHFSLGLEAYVQATSPIR 558
Query: 465 RYMDLLAHYQVGLQAAAWV 483
RY DLLAH Q+ AW+
Sbjct: 559 RYADLLAHRQL----IAWI 573
>gi|124023181|ref|YP_001017488.1| ribonuclease II [Prochlorococcus marinus str. MIT 9303]
gi|123963467|gb|ABM78223.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9303]
Length = 683
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/320 (40%), Positives = 174/320 (54%), Gaps = 21/320 (6%)
Query: 169 KDISNFLQKAEDNLLN------------RKDLTHLKVYAIDVDEADELDDALSAMRLQDG 216
K +Q D LLN R DL+ L+ Y +D + E+DDA+S + D
Sbjct: 258 KSFEGSVQAQADQLLNKFEQLSFASDDSRLDLSDLRTYTLDDHQTQEIDDAISLQSV-DQ 316
Query: 217 RIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN 276
V+IH+ADP + I S D +A R TS++L PM P +A E +SLR G C
Sbjct: 317 DSWVWIHIADPARLIPVDSPLDLEARARATSLYLADGLRPMLPLSVAAEVLSLRAGRRCA 376
Query: 277 AVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL 336
A++V+VVL G IA+ V + I+P Y LTYE EL+ L + +L L+ R
Sbjct: 377 ALSVAVVLDESGCIADTRVCRTWIRPCYRLTYEDGDELIELAPPGDEDLSTLASLLKKRQ 436
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
WR +QGA+ E R KV +D +P +++ ++ PA RLVSE MIL G IA +G
Sbjct: 437 LWRERQGALLLEQSEGRFKV---KDDQPELHVV---ESTPARRLVSEAMILMGTVIAEFG 490
Query: 397 SFNNLALPYRGQPQSNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPG 455
NLALPYR QP + + + + L EGPVR +AI + + + R P+ H LGL
Sbjct: 491 KRQNLALPYRSQPPTQLPSATDLSQLIEGPVRHAAIKRCLSRGVLGTR-PMAHFSLGLSA 549
Query: 456 YVQFTSPIRRYMDLLAHYQV 475
YVQ +SPIRRY DLLAH QV
Sbjct: 550 YVQASSPIRRYADLLAHRQV 569
>gi|187438624|gb|ABO20871.2| chloroplast ribonuclease [Chlamydomonas reinhardtii]
Length = 1083
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 174/325 (53%), Gaps = 35/325 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLTHL+ + ID E+DD LS RL G +++IHVADPT++I P + D +
Sbjct: 602 NREDLTHLRCFTIDDAATTEVDDGLSLERLAGGGTRIWIHVADPTRWISPDTQLDLAGRQ 661
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP + PMFP LA SLR G+VC+A++V V L DGS+A V S + +
Sbjct: 662 RGRTLYLPWGSVPMFPRALAEGPFSLRAGQVCDALSVGVELRPDGSVASARVAPSRVLVS 721
Query: 304 YMLTYE----------------------------SATELLHLNLEEEAELKILSEAAALR 335
+ LTY+ A L+ E A+L+ L AA LR
Sbjct: 722 HKLTYDGADAALGGAEAAGGAAAAGGAAAAGGAGGAGVAGGLDGEALADLQELRRAATLR 781
Query: 336 LQWRLQQGAIDTATLETRIKVANPED---PEPIINLYVEDQADPAMR-LVSEMMILCGEA 391
Q+R +G I+ E +I V PE P + + Q + A R LV+EMMIL GEA
Sbjct: 782 RQYREGRGCIEIPLPEAKIHV-PPEQLDRARPAVTVTRISQWESASRSLVAEMMILTGEA 840
Query: 392 IATYGSFNNLALPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV 450
+ T G+ L LPYR Q + + +A A LPEGP R A+ + M + + P RH
Sbjct: 841 VGTVGAEAELPLPYRAQDEPELPPAARLAALPEGPCRGFALKRCMTRSTVAA-APQRHAA 899
Query: 451 LGLPGYVQFTSPIRRYMDLLAHYQV 475
L L YVQFTSPIRRY D+LAHY +
Sbjct: 900 LALDAYVQFTSPIRRYSDMLAHYNL 924
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP 161
LQ G L+EF+K+ DR +L + PDGKKNW V DQ+G SI+P+QV+ ++P
Sbjct: 306 LQAGCLVEFEKN-DRGVLGLVTGPDGKKNWFVVDQSGRRSSIQPKQVSLLLP 356
>gi|33863013|ref|NP_894573.1| ribonuclease II [Prochlorococcus marinus str. MIT 9313]
gi|33634930|emb|CAE20916.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9313]
Length = 688
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 168/293 (57%), Gaps = 9/293 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL+ L+ Y +D + E+DDA+S ++ D ++IH+ADP + I S D +A
Sbjct: 290 NRLDLSDLRTYTLDDHQTQEIDDAIS-LQCVDQDNWIWIHIADPARLIPVDSPLDLEARA 348
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L M P +A+E +SLR G C A++V+VVL G IA V + I+P
Sbjct: 349 RATSLYLADGLRTMLPLSVAVEVLSLRAGRRCAALSVAVVLDESGCIAGTRVCRTWIRPC 408
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE EL+ L + +L L+ R WR +QGA+ E R KV +D +
Sbjct: 409 YRLTYEDGDELIELAPPGDEDLSTLASLLTTRQLWRERQGALLLEQSEGRFKV---KDDQ 465
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
P +++ ++ PA RLVSE MIL G IA +G N+ALPYR QP + + + + L
Sbjct: 466 PELHIV---ESSPARRLVSEAMILMGTVIAEFGKRQNIALPYRSQPPTQLPSATELSQLI 522
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVR +AI + + + R P+ H LGL YVQ +SPIRRY DLLAH QV
Sbjct: 523 EGPVRHAAIKRCLSRGVLGTR-PMAHFSLGLSAYVQASSPIRRYADLLAHRQV 574
>gi|116070582|ref|ZP_01467851.1| Exoribonuclease II [Synechococcus sp. BL107]
gi|116065987|gb|EAU71744.1| Exoribonuclease II [Synechococcus sp. BL107]
Length = 674
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 169/293 (57%), Gaps = 9/293 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL HL Y +D E+DDA+S + +Q+G + +++H+ADP + I PGS D++A +
Sbjct: 277 DRLDLCHLATYTLDDAGTREIDDAVS-LDVQNGEVWIWVHIADPARLISPGSPLDQEARR 335
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P LA +SLR G+ A++VSV L S G+IAE + S ++P
Sbjct: 336 RATSLYLADGVLPMLPLGLAAGPLSLRAGQRTAAISVSVRLDSAGAIAERRIARSWVQPR 395
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS+ LR +WR QQGA+ +E R + + D
Sbjct: 396 YGLTYADGDELIELAPPGDETLADLSQLMQLRSRWRRQQGALMFDRMEGRFRRS---DGA 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
+ L + PA +VSE M+L G +A +G + LALP+R QP + + + LP
Sbjct: 453 LFLQLV---EPSPARLMVSEAMLLMGAVVAEFGCQHELALPFRSQPPAELPSQTELDQLP 509
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGP R +AI + + + + +P+ H LGL YVQ TSPIRRY DL +H Q+
Sbjct: 510 EGPARDAAIKRCL-SRGVQGTQPMAHFSLGLSAYVQATSPIRRYADLASHRQI 561
>gi|78184711|ref|YP_377146.1| exoribonuclease II [Synechococcus sp. CC9902]
gi|78169005|gb|ABB26102.1| Exoribonuclease II [Synechococcus sp. CC9902]
Length = 674
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 167/293 (56%), Gaps = 9/293 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL HL Y +D E+DD +S + Q+G + +++H+ADP + I PGS D++A +
Sbjct: 277 DRLDLCHLATYTLDDAGTREIDDGIS-LDDQNGEVWIWVHIADPARLIPPGSPLDQEARR 335
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P LA +SLR GE AV+V+V L S G+IA+ + S ++P
Sbjct: 336 RATSLYLADGVLPMLPLSLAAGPLSLRAGERTAAVSVAVRLDSAGAIADRRIARSWVRPR 395
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS LR +WR QQGA+ +E R + E
Sbjct: 396 YGLTYADGDELIELAPPGDETLADLSRLMQLRSRWRRQQGALMFDRMEGRFRRQEGE--- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
++L + + + PA +VSE M+L G +A +G N L LP+R QP + + A LP
Sbjct: 453 --LSLQLVEPS-PARLMVSEAMLLMGAVVADFGCQNTLPLPFRSQPPAELPSQAELDQLP 509
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGP R +AI + + + + +P+ H LGL YVQ TSPIRRY DL +H Q+
Sbjct: 510 EGPARDAAIKRCL-SRGVQGTQPMAHFSLGLAAYVQATSPIRRYADLASHRQI 561
>gi|37521185|ref|NP_924562.1| ribonuclease II [Gloeobacter violaceus PCC 7421]
gi|35212181|dbj|BAC89557.1| ribonuclease II [Gloeobacter violaceus PCC 7421]
Length = 663
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 165/294 (56%), Gaps = 12/294 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+D L +Y ID + E+DD LS L+DGR K++IH+ADPT++++PG + +A +
Sbjct: 263 SRRDFGRLAIYTIDDESTREIDDGLSLEMLEDGREKLWIHIADPTRWVQPGDPLEAEARR 322
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+LPT PMFP +LA MSL G++ A++ ++ DG++ + V ++++
Sbjct: 323 RATSVYLPTGAIPMFPPELATGPMSLLPGQLNCALSFGAIIGPDGAVENFEVTPALVRTV 382
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y +TYE A L+ EE L L E A R + R Q+GA+ E ++KV + E
Sbjct: 383 YPVTYEEADPLIASG--EEPVLARLHEIALARRRHRHQRGAVSIDLPEAQVKVKDDE--- 437
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHL 421
+ +E D A R LVSEMMIL GE A + +P+R QP + L
Sbjct: 438 ----IRLEILGDSASRLLVSEMMILAGELAARLAIEAGIPVPFRTQPAPELPPADELLRL 493
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
P GPVR A+ + M+ + P RH LGL Y Q TSPIRRY DLL H+Q+
Sbjct: 494 PAGPVREFAVCRCMQRGEVSV-YPARHAGLGLDAYTQATSPIRRYSDLLVHFQI 546
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
+++G L+EF+ R L V PDGKKN+ + Q G + ++ P+Q+T+ V G +
Sbjct: 1 MERGTLVEFRLQGGR-RLGVISGPDGKKNFNLQTQTGNTQTVHPRQITYQVAG-GPYRTS 58
Query: 170 DISNFLQKAEDNLLNRKDL 188
++ F + + N L++ DL
Sbjct: 59 ELPAFESQVQ-NYLDQADL 76
>gi|260434908|ref|ZP_05788878.1| exoribonuclease II [Synechococcus sp. WH 8109]
gi|260412782|gb|EEX06078.1| exoribonuclease II [Synechococcus sp. WH 8109]
Length = 676
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 173/299 (57%), Gaps = 9/299 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL Y++D E+DDALS R +DG ++IH+ADP++ I+ S D +A +
Sbjct: 279 QRIDLTHLATYSLDDSGTREIDDALSLER-RDGVDWIWIHIADPSRLIDIDSPLDHEARR 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P +LA +SLR G+ C A++V+V L DG++AE + S I+P
Sbjct: 338 RATSLYLAEGVMPMLPLELAAGPLSLRAGQRCAALSVAVCLDDDGAVAEQRIARSWIRPR 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS LR++WR +GA+ E R + ++
Sbjct: 398 YGLTYTDGDELIELAPPGDEALSDLSGLLMLRMRWRRSKGAVMFDQPEGRFRYSD----- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLP 422
+ L V D + P+ +VSE M+L G +A++G ++L LP+R QP + + + +P
Sbjct: 453 GALTLQVIDPS-PSRLMVSEAMLLMGAVVASFGQEHSLPLPFRSQPAAELPSIDELDRIP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
EGP R +AI + + + + + + H LGL YVQ TSPIRRY DL+AH Q+ Q +A
Sbjct: 512 EGPARDAAIKRCL-SRGVQGTRAMPHFSLGLEAYVQATSPIRRYADLVAHRQIIAQLSA 569
>gi|194476531|ref|YP_002048710.1| probable ribonuclease II [Paulinella chromatophora]
gi|171191538|gb|ACB42500.1| probable ribonuclease II [Paulinella chromatophora]
Length = 476
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 166/293 (56%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT L+ + ID ELDDALS + QDG ++IH+ADP + + PGS D +A +
Sbjct: 75 QRLDLTGLRCFTIDDPGTQELDDALSYEQDQDGNEWIWIHIADPDRLVFPGSDLDLEAKQ 134
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L + PMFP +LA +SL+QG+ C AV+ +++L + G + + + S I PT
Sbjct: 135 RATSLYLASGGLPMFPMELAAGSLSLKQGQRCAAVSTAILLDNCGEVVKIILQRSWIYPT 194
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE EL+ L + EL L+ +LR WR +QGA++ E + +D E
Sbjct: 195 YRLTYEDGDELIELAPNGDEELSHLTRLMSLRRGWRQRQGALELEKSEGKF----CQDGE 250
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
I +E A ++V+E MIL G +A G N+ LPYR QP + + ++ LP
Sbjct: 251 TIGLEIIETSC--ARQMVAESMILLGATLADLGKRKNIVLPYRSQPSAELPLTIELNTLP 308
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVR +AI + + + K H LGL YVQ TSPIRRY DL+ Q+
Sbjct: 309 EGPVRHTAIKRCLSRGLLG-TKAAPHFSLGLSCYVQATSPIRRYGDLIVQRQL 360
>gi|116074878|ref|ZP_01472139.1| Exoribonuclease II [Synechococcus sp. RS9916]
gi|116068100|gb|EAU73853.1| Exoribonuclease II [Synechococcus sp. RS9916]
Length = 583
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 171/314 (54%), Gaps = 22/314 (7%)
Query: 175 LQKAEDNLLN-----------RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
LQ+AE NLLN R DL HL ID E ++DDALS R DG +++IH
Sbjct: 167 LQEAE-NLLNASQSSQPGDERRIDLCHLHCVTIDDSETRDIDDALSLERKPDGSKRIWIH 225
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+ADP + I+PGS D++A RG+S++L PMFP+ L+ SLR G A + V
Sbjct: 226 IADPGRLIQPGSTLDQEAAARGSSLYLARGNQPMFPDVLSTGPFSLRAGHKSAAWSTWVE 285
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
L+ +G+IA Y + S +KP Y L+Y+ A EL+ L EEA+L L + R WR + G
Sbjct: 286 LNEEGAIAAYGITRSWVKPLYKLSYDDADELIDLAPPEEADLADLDQLLRRRKLWRERNG 345
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRL-VSEMMILCGEAIATYGSFNNLA 402
A+ E RI+ + +L +E RL V+E MIL G A YG + L
Sbjct: 346 ALLMDLPEGRIRCRDG-------DLSLEITEPSVSRLMVAEAMILTGAVTAQYGVDHGLP 398
Query: 403 LPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTS 461
LPYR Q +++ A + LP+G VR +AI + + + KP H LGLP YVQ TS
Sbjct: 399 LPYRSQLPADLPSPAQLSELPDGAVRFAAIKRCLSRGLMGT-KPASHFSLGLPAYVQATS 457
Query: 462 PIRRYMDLLAHYQV 475
PIRRY DL+ Q+
Sbjct: 458 PIRRYCDLIVQRQI 471
>gi|148242325|ref|YP_001227482.1| exoribonuclease R/ribonuclease II [Synechococcus sp. RCC307]
gi|147850635|emb|CAK28129.1| Exoribonuclease R/ribonuclease II [Synechococcus sp. RCC307]
Length = 655
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLTHL ++ID E+DDA+ R +DG + +++H+ADP +++EPG D +A +
Sbjct: 254 QRRDLTHLSCFSIDSASTQEVDDAIGLER-RDGDLWIWVHIADPHQWLEPGDRLDLEAQR 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++L PMFP +A + MSLR C A++V V+L +DG+I S +K +
Sbjct: 313 RGSTLYLSGGAMPMFPMAVARDCMSLRPMRRCGALSVGVLLDADGAITAVKPCRSWVKVS 372
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE A +L+ L E+ +L L+E R WR QQGA+ E R+ +
Sbjct: 373 YGLTYEDADDLIELAPPEDPDLAELAELLKRRTAWREQQGALLMEQAEGRLFRNGAAE-- 430
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ L + + A VSE MIL G A+A + S + LA+P+R Q S+ D + P+
Sbjct: 431 --LALEITEPGL-ARSCVSEAMILAGAAMAEWSSQHELAMPFRVQAGSSQDNAEANQWPQ 487
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
GPVR + + + + + K HG LGLP Y+Q+TSPIRRY DLLAH Q
Sbjct: 488 GPVRWAQQRRGLSRSRLQ-SKAEPHGSLGLPMYLQWTSPIRRYGDLLAHRQ 537
>gi|78212866|ref|YP_381645.1| ribonuclease II [Synechococcus sp. CC9605]
gi|78197325|gb|ABB35090.1| probable ribonuclease II [Synechococcus sp. CC9605]
Length = 676
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/299 (38%), Positives = 172/299 (57%), Gaps = 9/299 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL Y++D E+DDALS R +DG ++IH+ADP++ I+ S D++A +
Sbjct: 279 QRIDLTHLATYSLDDAGTREIDDALSLER-RDGVNWIWIHIADPSRLIDIDSPLDQEARR 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++L PM P +LA +SLR G+ C A++ +V L +DG++ E + S I+P
Sbjct: 338 RATSLYLAEGVMPMLPLELAAGPLSLRAGQRCAALSAAVHLDADGAVVEQRIARSWIRPR 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY EL+ L + L LS R++WR +GA+ E R + ++
Sbjct: 398 YGLTYGDGDELIELAPPGDEALSDLSGLLMQRMRWRRSKGAVMFDRPEGRFRRSDGS--- 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLP 422
+ L V D + P+ +VSE M+L G +A++G +NL LP+R QP + + S +P
Sbjct: 455 --LTLQVIDPS-PSRLMVSEAMLLMGAVVASFGQKHNLPLPFRSQPAAELPSSDELDRIP 511
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
EGP R +AI + + + + + + H LGL YVQ TSPIRRY DL+AH Q+ Q +A
Sbjct: 512 EGPARDAAIKRCL-SRGVQGTRAMPHFSLGLEAYVQATSPIRRYADLIAHRQIIAQLSA 569
>gi|299116373|emb|CBN74638.1| COG0557: Exoribonuclease R [Ectocarpus siliculosus]
Length = 820
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 182/305 (59%), Gaps = 20/305 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI-KVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLTHLKVYAID ++ +E+DD LS L DG +V++H+AD ++++ GS ++A +
Sbjct: 319 RRDLTHLKVYAIDSEDTNEVDDGLSVEALPDGAGERVWVHIADVSRWVPEGSPLYEEARR 378
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
+ T+++LP PMFP ++A +SLR G C ++++ + L G I + V +++K T
Sbjct: 379 KRTTIYLPEGAEPMFPAEVAHGVLSLRSGHECYSLSMGITLGESGEITDVIVTPALVKVT 438
Query: 304 YMLTYESATELLHLNL---EEEAELKILSEAAALRLQWRLQQGAID--TATLETRIK-VA 357
Y LTY+ ++L + +E EL L E A LR ++R +QG++D L+ +K V
Sbjct: 439 YRLTYDDVEDMLVNGIAGSADEWELGRLDELAQLRYRYRCEQGSVDRFQKGLDHNVKAVE 498
Query: 358 NPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ------PQ 410
+P P + + ED + ++RLV+EMM+L GE + + G + LP+R Q P+
Sbjct: 499 DPSVPGGYAVKVIPEDPSCRSIRLVTEMMVLVGEGMGSVGGEEGIPLPFRHQKAPDSFPE 558
Query: 411 SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+++++ LPE R+ K M ++A P H LGL YVQ++SPIRRY+DLL
Sbjct: 559 TDLEL-----LPEKYCRAQGAYKYM-SSATTATTPQPHWGLGLDSYVQWSSPIRRYLDLL 612
Query: 471 AHYQV 475
AHYQV
Sbjct: 613 AHYQV 617
>gi|87303682|ref|ZP_01086457.1| probable ribonuclease II [Synechococcus sp. WH 5701]
gi|87281787|gb|EAQ73752.1| probable ribonuclease II [Synechococcus sp. WH 5701]
Length = 674
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 169/294 (57%), Gaps = 10/294 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLT L+ Y +D + +E+DDA++ L G +++++H+ADP + + GS D +A +
Sbjct: 277 SRRDLTALRSYTLDDADTEEIDDAVALELLDGGGLRLWVHIADPGRLVASGSPLDLEARR 336
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFP LA+ SLRQG+ C A + +V L DGS+A + + S I PT
Sbjct: 337 RGSSLYLAAGVVPMFPLPLAVGPFSLRQGQRCAAWSCAVELAEDGSVARHELVRSWICPT 396
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTY L+ L EE +L L R +WR+ +GA+ E RI+ +
Sbjct: 397 YRLTYGDGDALIDLAPPEEPDLAQLQGLLERRRRWRVARGALSMEQSEGRIRCQDDH--- 453
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
L + D + PA LV+E MIL G +A + + LA+P+RGQP S + S LP
Sbjct: 454 --AELEITDPS-PARALVAEAMILTGSVVAAHAAELGLAMPFRGQPVSELPTESELEALP 510
Query: 423 EGPVRSSAIVKIM-RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+GPVR +A+ + + R + P H LGLP YVQ TSPIRRY DL+A Q+
Sbjct: 511 DGPVRHAALRRCLSRGSTSAAVSP--HFSLGLPAYVQATSPIRRYADLVAQRQL 562
>gi|88808523|ref|ZP_01124033.1| Exoribonuclease II [Synechococcus sp. WH 7805]
gi|88787511|gb|EAR18668.1| Exoribonuclease II [Synechococcus sp. WH 7805]
Length = 651
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 157/292 (53%), Gaps = 8/292 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTH ID E ++DDAL RL D +++++IH+ADP + I GS D +A +
Sbjct: 246 ERIDLTHQTCVTIDDAETRDIDDALGLERLADDQLRIWIHIADPGRLITTGSPLDLEARR 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFP L+ E SL+ G+ A + V L G + + S + P
Sbjct: 306 RGSSLYLARGILPMFPSNLSTEVFSLKAGQRNAAWSTWVDLDHTGDVKTSGMCRSWVTPR 365
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE A EL+ EEA+L L A R +WRL++GA+ E RI+ D +
Sbjct: 366 YRLTYEDADELIDFAPPEEADLSNLHALLATRRRWRLERGALLMDLPEGRIRC---RDGQ 422
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
P + + + P+ +V+E MILCG AT G N LALP+R Q + + +A L
Sbjct: 423 PTVEIT---EPSPSREMVAEAMILCGTVAATKGIENALALPFRSQLPAELPSAAQLEELA 479
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
+G VR +AI + + + P H LG+P Y Q TSPIRRY DL+ Q
Sbjct: 480 DGAVRFAAIKRCLSRGLMG-TTPAAHFSLGVPAYTQATSPIRRYGDLVVQRQ 530
>gi|148239629|ref|YP_001225016.1| exoribonuclease R/ribonuclease II [Synechococcus sp. WH 7803]
gi|147848168|emb|CAK23719.1| Exoribonuclease R/ribonuclease II [Synechococcus sp. WH 7803]
Length = 649
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 160/291 (54%), Gaps = 8/291 (2%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL ID E ++DDAL RL + ++++IH+ADP++ I GS D +A +R
Sbjct: 245 RRDLTHLACVTIDDAETKDIDDALGLERLANDHLRIWIHIADPSRLITAGSPLDLEARRR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+S++L PMFP KL+ E SL+ G+ A + V L + G + + S + P Y
Sbjct: 305 GSSLYLSRGLLPMFPSKLSSEVFSLKAGQRNPAWSTWVDLDASGDVTASGLCRSWVTPRY 364
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A EL+ EEA+L L + R QWR+Q+GA+ E RI+ D +P
Sbjct: 365 RLTYDDADELIDFAPPEEADLSDLHDLLTTRRQWRVQRGALLMDLPEGRIRC---RDGQP 421
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLPE 423
I + + P+ +V+E MILCG A+ G ++L LP+R Q + + +A L +
Sbjct: 422 TIEIT---EPSPSRDMVAEAMILCGSVAASQGIEHDLPLPFRSQLPAELPSAAQLEGLGD 478
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
G VR +AI + + + P H LGL Y Q TSPIRRY DL+ Q
Sbjct: 479 GAVRFAAIKRCLSRGLMG-TTPAAHFSLGLSAYAQATSPIRRYSDLVVQRQ 528
>gi|308808199|ref|XP_003081410.1| ribonuclease II (ISS) [Ostreococcus tauri]
gi|116059872|emb|CAL55579.1| ribonuclease II (ISS) [Ostreococcus tauri]
Length = 758
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/298 (36%), Positives = 166/298 (55%), Gaps = 8/298 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL YAID E+DDA+SA L +GRI+V++HVADP++++ S D A
Sbjct: 348 SRVDLTHLSAYAIDDAGTVEVDDAVSAESLDEGRIRVWVHVADPSRWVTMNSTLDITARG 407
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSL-RQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
R T+++ PT PMFP ++ MSL E A+T+ + +DG+I ++ + S++K
Sbjct: 408 RATTLYYPTELVPMFPLDISAGPMSLGANAEASEAMTIRADVDADGNIEDFDITPSLVKI 467
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV----AN 358
TY+ L ++ +A L++L + A+ R + R G++ ET IKV A
Sbjct: 468 DRRWTYDEVDAELD-SVTCDASLRLLYKVASARDERRADDGSVTIILPETSIKVQGATAR 526
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSA 417
+ + + + + + LVSE+MIL G+ +A +G NL LP+RGQ + +
Sbjct: 527 GGEDDATVEMVKLESNTASRTLVSELMILAGDVVARFGIKENLPLPFRGQGEPRLMSDDE 586
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ +PEG + A+ M A+ P H LGL YVQFTSPIRRY DLLAHYQ+
Sbjct: 587 WDEIPEGICQDMAMRSCMN-ASTGGATPRPHSGLGLDAYVQFTSPIRRYADLLAHYQI 643
>gi|302832602|ref|XP_002947865.1| hypothetical protein VOLCADRAFT_103637 [Volvox carteri f.
nagariensis]
gi|300266667|gb|EFJ50853.1| hypothetical protein VOLCADRAFT_103637 [Volvox carteri f.
nagariensis]
Length = 1028
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 168/329 (51%), Gaps = 39/329 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-----IKVYIHVADPTKYIEPGSLSDK 239
R+DLTHL+V+ ID E+DD LS RL+ I+++IHVADPT++I PGS D
Sbjct: 473 REDLTHLRVFTIDDVTTTEVDDGLSLERLEGSEGAAAGIRIWIHVADPTRWIRPGSNLDM 532
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
R +++LP + PMFP +LA SLR+G+VC+A++V V L+ DGS+ V S
Sbjct: 533 AGRDRIRTLYLPWGSVPMFPRQLAEGPFSLREGQVCDAMSVCVRLNKDGSLERPRVVPSR 592
Query: 300 IKPTYMLTYES------------------ATELLHLNLEEEAELKILSEAAALRLQWRLQ 341
++ + LTY+ A E+ +L AA L +
Sbjct: 593 VRVNHKLTYDQADAVLAALAAGDGNGTEAAGTGAGAVAVEDGSRGVLDVAAVADLLALRE 652
Query: 342 Q-----------GAIDTATLETRIKV--ANPEDPEPIINLYVEDQAD-PAMRLVSEMMIL 387
G I+ E +I V ++ + P + + Q D P+ LV+EMMIL
Sbjct: 653 AALARRAYREACGCIEIPLPEAKINVPYSHLDRARPAVTISRISQWDSPSRSLVAEMMIL 712
Query: 388 CGEAIATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV 446
GEA+ G+ L LPYR Q + SA A LPEGP R A+ + M +A+ P
Sbjct: 713 AGEAVGAIGAEAALPLPYRSQDSPELPPASALAALPEGPCRGFALKRCMTRSAVG-PSPR 771
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
RH L L YVQFTSPIRRY D++AH+ +
Sbjct: 772 RHAALALDAYVQFTSPIRRYSDMVAHHNL 800
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
LQ G L+E++K+ DR +LAV PDGKKNW DQ G I P+QV FV+PG +
Sbjct: 183 ALQVGALVEYEKN-DRAVLAVLVAPDGKKNWFAVDQTGRRQPITPKQVVFVLPG-SGYRE 240
Query: 169 KDISNFLQKAE 179
D++ F++ AE
Sbjct: 241 GDVAAFVEAAE 251
>gi|412990897|emb|CCO18269.1| ribonuclease II [Bathycoccus prasinos]
Length = 754
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 172/312 (55%), Gaps = 25/312 (8%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQ--DGRIKVYIHVADPTKYIEPGSLSDKDA 241
+R DL+ L+V+A+D + E+DD +S +++ D ++VYIHVADPT++I S D +A
Sbjct: 313 SRVDLSRLEVFAVDNESTYEIDDGISIEKIEGDDEFVRVYIHVADPTRFIVFDSPLDIEA 372
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT--------VSVVLHSD-----G 288
KRGT+++LPT + PMFP+ L+ +SLR V N T V++ + +D G
Sbjct: 373 RKRGTTLYLPTESIPMFPKSLSGGKLSLR---VANDETTTRNDNEGVALTVQADISRLNG 429
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTA 348
SI Y + S I +TYE L + +L +L+E A R R +GAI+
Sbjct: 430 SIRSYDIYPSTISGVTRMTYEDVDAHLKDEGRAKNDLHLLNECAVARYHKRENEGAINIL 489
Query: 349 TLETRIKVANPE----DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
E + V++ + D I L D + + LVSEMMIL GE T+G N+LALP
Sbjct: 490 LPELDVFVSSADARGGDVSSEIFLKRRDNSASNI-LVSEMMILAGEIAGTFGVENSLALP 548
Query: 405 YRGQPQSN-IDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
+RGQ + +D + +P+G A+ M A++ P H LGL YVQFTSPI
Sbjct: 549 FRGQGEPRLLDEETWDTIPDGVCAEMAMRSCMTASSQGI-TPRPHHSLGLSAYVQFTSPI 607
Query: 464 RRYMDLLAHYQV 475
RRY DLLAHYQ+
Sbjct: 608 RRYADLLAHYQI 619
>gi|307109243|gb|EFN57481.1| hypothetical protein CHLNCDRAFT_143004 [Chlorella variabilis]
Length = 577
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 160/298 (53%), Gaps = 16/298 (5%)
Query: 184 NRKDLTHL-KVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R DLT V ID E+DD LS RL G +KV++H+ADP++++ PGS +A
Sbjct: 147 RRVDLTSTHSVITIDDASTTEIDDGLSLERLPGGGLKVWVHIADPSRWVAPGSALAGEAR 206
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSVDNSII 300
RG S++LPT PMFP+ LA SLRQG AV+V V + ++G+ V S++
Sbjct: 207 GRGKSLYLPTGAVPMFPKCLAEGPFSLRQGVPTEAVSVGVEVTAEGAVVPGGVHVVPSLV 266
Query: 301 KPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
+P+ LTY E+L EE E +L L A LR RL GA++ E+ ++V
Sbjct: 267 RPSRRLTYRDVDEMLAACEEEDERDLFELRRVAELRRAHRLCGGAVEIDMPESSVRVEGA 326
Query: 360 EDPEPIINLYVEDQ-ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-DVSA 417
+ +P + + EDQ A PA +LV+EMMIL GEA+ G + LPYRGQ + + +
Sbjct: 327 DRDDPAVLIEEEDQFASPARQLVAEMMILAGEAVGQLGRELGVPLPYRGQAEPVLPEPEE 386
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A LP GP R+ A+ M + P+RH LGL Y DLLAH+Q+
Sbjct: 387 LAALPPGPCRAVALRSRMTRSVTVAHAPLRHAGLGL----------EAYGDLLAHWQL 434
>gi|145350966|ref|XP_001419862.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580094|gb|ABO98155.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 645
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 168/301 (55%), Gaps = 12/301 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRL-QDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DLT+L+ YAID E E+DDA+SA L DG+I+V++H+ADPT++I GS D A
Sbjct: 233 SRVDLTYLRAYAIDDAETVEVDDAVSAEALGDDGQIRVWVHIADPTRWIPLGSPLDAIAR 292
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSL--RQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
+R T+++ PT PMFP ++A MSL R A+TV + +G+I ++ + S +
Sbjct: 293 QRATTLYYPTEIVPMFPLEIAAGPMSLGSRSDVASEAMTVRADIDREGNIMDFEIMPSFV 352
Query: 301 KPTYMLTY-ESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV--- 356
K TY E EL +E L++L + A+ R + R + G++ E + V
Sbjct: 353 KLDRRWTYDEVDVELDSATCDE--GLRLLYKVASARDERRAEDGSVTIILPENSVNVRGA 410
Query: 357 -ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI-D 414
A D + I + + PA LVSE+M+L G+ +A +G N+ LP+RGQ + +
Sbjct: 411 TARGGDGDVAITMSKINGHTPARMLVSELMVLVGDVVARFGVRENIPLPFRGQGEPRLMS 470
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
+ +PEG + A+ M ++ P H LGL YVQFTSPIRRY D+LAH+Q
Sbjct: 471 DDEWDGIPEGICQDMAMRSCM-TSSTSGATPRPHSGLGLSAYVQFTSPIRRYADVLAHHQ 529
Query: 475 V 475
+
Sbjct: 530 I 530
>gi|317969854|ref|ZP_07971244.1| ribonuclease II [Synechococcus sp. CB0205]
Length = 597
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 145/261 (55%), Gaps = 8/261 (3%)
Query: 216 GRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVC 275
GR +++IHVADP + I GS D +A KR +S++L PMFP+KL+ SLR G
Sbjct: 234 GRTRIWIHVADPGRLIPAGSPLDLEARKRASSLYLAQGNVPMFPDKLSTGVFSLRAGRRT 293
Query: 276 NAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALR 335
A + L+ DGS+++Y + S +KP Y L+Y+ A EL+ L ++++L L R
Sbjct: 294 AAWSTWAELNEDGSLSDYGMVRSWVKPIYRLSYDDADELIELAPPQDSDLADLEGLLNAR 353
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+WRL QGA+ E RI+ E + L V + ++ + ++V+E MIL G A
Sbjct: 354 RRWRLSQGALQMDLPEGRIRAR-----EGLAQLEVTEPSN-SRQMVAEAMILAGAVAAQL 407
Query: 396 GSFNNLALPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLP 454
G +ALPYR Q + + A LP+G VR +AI + + + KP H LGLP
Sbjct: 408 GQDRGIALPYRSQLPAELPGQAELDALPDGAVRFAAIKRCLSRGLMGT-KPAAHFSLGLP 466
Query: 455 GYVQFTSPIRRYMDLLAHYQV 475
YVQ TSPIRRY DLL Q+
Sbjct: 467 AYVQATSPIRRYGDLLVQRQL 487
>gi|427701858|ref|YP_007045080.1| exoribonuclease R [Cyanobium gracile PCC 6307]
gi|427345026|gb|AFY27739.1| exoribonuclease R [Cyanobium gracile PCC 6307]
Length = 679
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 162/297 (54%), Gaps = 16/297 (5%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLT L ID + ++DD LS DG +++IH+ADP + + P S DK+A +
Sbjct: 281 RRRDLTGLHTVTIDDADTRDIDDGLSLEHGPDGAPRLWIHIADPGRLVAPESPLDKEARR 340
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R +S++L PMFPE L+ MSLR GE A+++ V L DG++A + +++S ++P
Sbjct: 341 RASSLYLARGPLPMFPEVLSTGPMSLRMGERSAALSLWVELTEDGAVAGFGLESSWVRPA 400
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV----ANP 359
Y L+Y A EL+ L +E L+ + R +WRL +GA+D E RI+ A
Sbjct: 401 YRLSYADADELIELAPPQERYLEEIHALMERRRRWRLARGALDLDQPEGRIRCDELGAQL 460
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-F 418
E EP PA LV+E MIL G IA G LALPYR Q + + A
Sbjct: 461 EITEP----------SPARTLVAEAMILAGAVIAGLGQEQGLALPYRSQLAAELPPEAEL 510
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A LP GPVR +AI + + + P H LGLP YVQ TSPIRRY DLL Q+
Sbjct: 511 AALPAGPVRHAAIKRCLSRGLLGT-SPAPHFSLGLPCYVQATSPIRRYNDLLVQRQL 566
>gi|352093900|ref|ZP_08955071.1| ribonuclease II [Synechococcus sp. WH 8016]
gi|351680240|gb|EHA63372.1| ribonuclease II [Synechococcus sp. WH 8016]
Length = 700
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 163/293 (55%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL H + ID ++ ++DD ++ R DG +V+IH+ADP + IE GS D +A +
Sbjct: 297 ERIDLCHQRCVTIDDEDTRDIDDGIALERCDDGSQRVWIHIADPGRLIEAGSALDLEARR 356
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFPE L+ SLR + A ++ L SDG + ++ + S ++PT
Sbjct: 357 RGSSLYLAKGNLPMFPECLSTGPFSLRARKRTAAWSIWAELSSDGELGDHGIQRSWVQPT 416
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+YE A EL+ L E+ +L L + R R++ GA+ E RI+ D +
Sbjct: 417 YRLSYEDADELIELAPPEDTDLAELDALLSRRRDCRVRHGALIMDLPEGRIRC---RDGQ 473
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
P + + + + ++V+E MIL G +A + N+LALP+R Q +++ S+ LP
Sbjct: 474 PSLEV---SEPGRSRQMVAEAMILAGAVVARFAEINDLALPFRSQLTADLPPSSELDALP 530
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EG VR +AI + + + I +P H LGL Y Q TSPIRRY DL+ Q+
Sbjct: 531 EGAVRFAAIKRCL-SRGIMGTQPAAHFSLGLASYAQATSPIRRYGDLVVQRQL 582
>gi|255080276|ref|XP_002503718.1| ribonuclease [Micromonas sp. RCC299]
gi|226518985|gb|ACO64976.1| ribonuclease [Micromonas sp. RCC299]
Length = 851
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 162/324 (50%), Gaps = 34/324 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT L+ YAID + E+DDA+SA L G+I+V++HVAD T+++ G+ + +A R
Sbjct: 414 RKDLTRLRCYAIDGEGTVEVDDAVSAEALPGGKIRVWVHVADATRWVGLGTPLEAEAESR 473
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S + P PMFP +A MSL GE AV+V+ V+ G+ EY V S I+ T
Sbjct: 474 GASGYHPRGVLPMFPLPVAAGLMSLTPGEPKCAVSVTAVIDESGATEEYWVGTSTIRVTR 533
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
T ++L L++L EAA R + RL++GA++ T E +V + + E
Sbjct: 534 AATEGEVIKMLAEEPGRHESLELLVEAARRRRELRLKRGAVEVRTPEATARVIDVGEGEG 593
Query: 365 IINL------------YVEDQADPAMR--------------------LVSEMMILCGEAI 392
+ E A R LV E MILCGE I
Sbjct: 594 FVERDDIPGGVRTGGNRCEQSATAVRRAEAAALDVRLTRGDHNDVKDLVGEAMILCGELI 653
Query: 393 ATYGSFNNLALPYRGQPQS-NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
A +GS N + LPYRGQ + +I + P G R MR A P RH L
Sbjct: 654 ARFGSENGVPLPYRGQLEPRDISQKTWDETPPGLCREVLKRHSMRGAN-QGPTPRRHAGL 712
Query: 452 GLPGYVQFTSPIRRYMDLLAHYQV 475
G+ YVQF+SPIRRY DLLAHYQV
Sbjct: 713 GIDAYVQFSSPIRRYTDLLAHYQV 736
>gi|87124492|ref|ZP_01080341.1| probable ribonuclease II [Synechococcus sp. RS9917]
gi|86168064|gb|EAQ69322.1| probable ribonuclease II [Synechococcus sp. RS9917]
Length = 657
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 7/295 (2%)
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
L+ R DG+++++IHVADP + + S D +A +RG+S++L PMFP+ L+
Sbjct: 280 GLALERRPDGKLRIWIHVADPGRLVAAESPLDLEARRRGSSLYLVRGILPMFPDILSTGP 339
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK 326
SLR G+ A + V L G+I Y + S + P Y L+YE A EL+ EEA+L
Sbjct: 340 FSLRAGQRNPAWSTWVELDDSGAIEAYGIARSWVTPRYRLSYEDADELIDFAPPEEADLA 399
Query: 327 ILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI 386
L++ R QWR+ QGA+ E RI+ + + P I + P+ +V+E MI
Sbjct: 400 ELNDLLERRRQWRVSQGALLMDLPEGRIRCRDDDHPSVAIT-----EPSPSRLMVAEAMI 454
Query: 387 LCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
L G A +G +NLALP+R Q +++ A LP+G VR +AI + + +
Sbjct: 455 LAGAVAARFGVEHNLALPFRSQLPADLPSPAQLDELPDGAVRFAAIKRCL-GRGLMGTTA 513
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEA 500
H LGLP Y Q TSPIRRY DL+ Q+ Q + +G E+ V+ A
Sbjct: 514 APHFSLGLPAYAQATSPIRRYGDLVVQRQIQAQLSGTTPLGGDALQELLNSVDSA 568
>gi|318041406|ref|ZP_07973362.1| ribonuclease II [Synechococcus sp. CB0101]
Length = 652
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 18/301 (5%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT + ID D+ ++DD L+ R DG ++++IHVADP + + S D +A +
Sbjct: 253 ERLDLTAQRCVTIDDDDTRDIDDGLALERRADGSLRLWIHVADPGRLVAVDSPLDLEARR 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L + PMFP L SLR G A + V L +G IA Y + S +KPT
Sbjct: 313 RGSSLYLASGNLPMFPLCLTTGPFSLRAGMRSAAWSTWVDLDHEGDIAAYGIQRSWVKPT 372
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+Y A +L+ L EE +L L + R QWR++QGA+ E RI+ D E
Sbjct: 373 YRLSYSDADDLIDLAPPEERDLAELDQLLDRRRQWRVRQGALLMDLPEGRIRS---HDGE 429
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ------PQSNIDVSA 417
P + + + P+ +V+E MIL G A +G + LALP+R Q P++ +D
Sbjct: 430 PTLEI---SEPSPSRAMVAEAMILAGAVAARFGVEHGLALPFRSQLPADLPPKAELDA-- 484
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGL 477
LP+G VR +AI + + + + H LGLP Y Q TSPIRRY DL+ Q+
Sbjct: 485 ---LPDGAVRFAAIKRCLSRGLMGTQASP-HFSLGLPAYAQATSPIRRYGDLVVQRQIQA 540
Query: 478 Q 478
Q
Sbjct: 541 Q 541
>gi|124025721|ref|YP_001014837.1| ribonuclease II [Prochlorococcus marinus str. NATL1A]
gi|123960789|gb|ABM75572.1| probable ribonuclease II [Prochlorococcus marinus str. NATL1A]
Length = 424
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 158/293 (53%), Gaps = 11/293 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDL+HLK Y ID + E+DDA+S ++ G+ K++IH+A P YIE S D+ A K
Sbjct: 28 KDLSHLKTYTIDDSKTVEIDDAISLEQVS-GQNKLWIHIASPASYIEYQSGIDEKARKLV 86
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++V+L T TY M PE L SL E ++++ V+L+ DG+I+ + S+I+ Y
Sbjct: 87 STVYLSTNTYYMLPEALINNVFSLSDKEKRESLSLGVILNDDGTISSTEIVQSLIQVDYR 146
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
L + A EL+ +EE +L ++S R WR G+I+ LE+ K+ +D P
Sbjct: 147 LDFTEADELIDYAPKEEIDLSLISTILESRKNWRKNLGSIE--ILESYGKIV-VDDKIPN 203
Query: 366 INLYVEDQADPAM--RLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I + DP + +L+SE MIL G+ I+ + N + +PYR Q +S+ L +
Sbjct: 204 IKI-----IDPTLSRQLISEAMILYGDIISNFTKLNKIPVPYRVQQRSDKVSRDNIQLSD 258
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
+ + ++K P++H L L Y+ TSPIRRY DLL HYQ+
Sbjct: 259 NKILYNFLLKKTMGKTYYSINPMQHDSLALTSYLHATSPIRRYADLLVHYQLN 311
>gi|72382181|ref|YP_291536.1| exoribonuclease R/ribonuclease II [Prochlorococcus marinus str.
NATL2A]
gi|72002031|gb|AAZ57833.1| exoribonuclease R/ribonuclease II [Prochlorococcus marinus str.
NATL2A]
Length = 424
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 158/293 (53%), Gaps = 11/293 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDLTHLK Y ID + E+DDA+S ++ G+ K++IH+A P YIE S D+ A K
Sbjct: 28 KDLTHLKTYTIDDSKTVEIDDAISLEQVS-GQNKLWIHIASPASYIEYQSGIDEKARKLV 86
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++V+L TY M P+ L SL E ++++ V+L+ DGSI+ + S+I+ Y
Sbjct: 87 STVYLSNNTYYMLPKALINNVFSLSDKEKRESLSLGVILNDDGSISSTEIVQSLIQVDYR 146
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
L + A EL+ +EE +L ++S R WR G+I+ LE+ K+ ED P
Sbjct: 147 LDFIEADELIDYAPKEEIDLSLISTILESRKSWRKNLGSIE--ILESYGKIV-VEDKIPN 203
Query: 366 INLYVEDQADPAM--RLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
I + DP + +L+SE MIL G+ I+ + N + +PYR Q +S+ + L +
Sbjct: 204 IKI-----IDPTLSRQLISEAMILYGDIISNFTKLNKIPVPYRVQERSDKVSNDNIQLSD 258
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
+ + ++K P++H L L Y+ TSPIRRY DLL HYQ+
Sbjct: 259 NKILYNFLLKKTMGKTYYSINPMQHDSLALTSYLHATSPIRRYADLLVHYQLN 311
>gi|254430786|ref|ZP_05044489.1| exoribonuclease, VacB/RNB family protein [Cyanobium sp. PCC 7001]
gi|197625239|gb|EDY37798.1| exoribonuclease, VacB/RNB family protein [Cyanobium sp. PCC 7001]
Length = 654
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 162/293 (55%), Gaps = 8/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT L ID + ++DDA+ R DG ++++IH+ADP + + S D +A +
Sbjct: 256 DRLDLTALHCVTIDDADTRDIDDAIGLERCADGLLRLWIHIADPGRLVALDSPLDVEARR 315
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L + T PMFPE LA +SL G A ++ + L +G+I + S ++PT
Sbjct: 316 RGSSLYLASGTLPMFPEALATGPLSLVAGRRNAAWSLGLELDGEGAITATRLARSWVRPT 375
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+Y A EL+ L E+ +L L R +WRL +GAI E RI+V D E
Sbjct: 376 YRLSYADADELIDLAPPEDPDLAELHGLLERRRRWRLARGAIQMDQPEGRIRV---RDGE 432
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLP 422
P + + + P+ +V+E MIL G A+A +G ++LALPYR Q P S LP
Sbjct: 433 PELEIT---EPSPSRLMVAEAMILAGAAVAAHGQEHHLALPYRSQLPAELPRPSELEALP 489
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR +AI + + P H LGLP YVQ TSPIRRY DL+ Q+
Sbjct: 490 AGPVRHAAIKRCLSRGHTGA-VPSAHFSLGLPAYVQATSPIRRYGDLVVQRQL 541
>gi|113952971|ref|YP_730543.1| exoribonuclease, VacB/RNB family protein [Synechococcus sp. CC9311]
gi|113880322|gb|ABI45280.1| exoribonuclease, VacB/RNB family protein [Synechococcus sp. CC9311]
Length = 645
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 163/296 (55%), Gaps = 8/296 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL H + ID ++ ++DD ++ R +DG +++IH+ADP + IE S D +A +
Sbjct: 246 ERIDLCHQRCVTIDDEDTRDIDDGIALERREDGSQRLWIHIADPGRLIESDSALDLEARR 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++L PMFPE L+ SLR A ++ L S+G + ++ + S ++PT
Sbjct: 306 RGSSLYLAKGNLPMFPESLSTGPFSLRARTRTAAWSIWAELTSEGELGDHGIHRSWVQPT 365
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y L+Y+ A EL+ L E+ +L L + R +R++ GA+ E RI+ D +
Sbjct: 366 YRLSYDDADELIELAPPEDTDLAELDALLSRRRDFRVRNGALLMDLPEGRIRC---RDGQ 422
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
P + + + A ++V+E MIL G +A + ++LALP+R Q +++ S+ LP
Sbjct: 423 PSLEV---SEPGRARQMVAEAMILAGAVVARFAEVHDLALPFRSQLPADLPPSSELEALP 479
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQ 478
+G VR +AI + + + +P H LGL Y Q TSPIRRY DL+ Q+ Q
Sbjct: 480 DGAVRFAAIKRCLSRGLMGT-QPAAHFSLGLASYAQATSPIRRYGDLVVQRQLQAQ 534
>gi|159903437|ref|YP_001550781.1| ribonuclease II [Prochlorococcus marinus str. MIT 9211]
gi|159888613|gb|ABX08827.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9211]
Length = 427
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 155/300 (51%), Gaps = 26/300 (8%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDLTHLK Y ID ++ E+DD +S L D K+++H+A P +Y+ D +A +
Sbjct: 30 KDLTHLKTYTIDDIDSAEIDDGVSIEYL-DNSTKIWVHIASPAEYLSFEDPIDIEASLKA 88
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+ +LP + M P L + +SL+ G + A++VS ++S G I ++ +IIKPT
Sbjct: 89 ATCYLPESPEYMLPNDLVTKLLSLKPGRISAALSVSAEINSAGEIVSSNLYRTIIKPTIA 148
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
LTYE A ++L L EE EL LS R +R+ +G+I N E+ E I
Sbjct: 149 LTYEDADDILDLQPFEEKELIDLSILMGNRRSYRVSKGSI------------NIEEEEGI 196
Query: 366 INLYVEDQ--------ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-- 415
Y +D +LVSE MIL G +A + N + +P+R Q Q NI +
Sbjct: 197 --FYFQDNVIKHKIKDVTRLRKLVSESMILFGYILADFSKTNKICIPFRVQNQQNISINT 254
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
S + + + + I + + I P H LGLP YVQ TSP+RRY+DLL HYQ+
Sbjct: 255 SKANNYIDKHICNFLIKNQLSKSYISL-TPEAHTSLGLPAYVQATSPLRRYIDLLTHYQI 313
>gi|159465501|ref|XP_001690961.1| 3'-5' exoribonuclease II [Chlamydomonas reinhardtii]
gi|158279647|gb|EDP05407.1| 3'-5' exoribonuclease II [Chlamydomonas reinhardtii]
Length = 699
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 148/324 (45%), Gaps = 85/324 (26%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLTHL+ + ID E+DD LS RL G +++IHVADPT++I P + D +
Sbjct: 365 NREDLTHLRCFTIDDAATTEVDDGLSLERLAGGGTRIWIHVADPTRWISPDTQLDLAGRQ 424
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP + PMFP LA SLR G+VC+A++V V L DGS+A V S + +
Sbjct: 425 RGRTLYLPWGSVPMFPRALAEGPFSLRAGQVCDALSVGVELRPDGSVASARVAPSRVLVS 484
Query: 304 YMLTYE----------------------------SATELLHLNLEEEAELKILSEAAALR 335
+ LTY+ A L+ E A+L+ L AA LR
Sbjct: 485 HKLTYDGADAALGGAEAAGGAAAAGGAAAAGGAGGAGVAGGLDGEALADLQELRRAATLR 544
Query: 336 LQWRLQQGAIDTATLETRIKVANPED---PEPIINLYVEDQADPAMR-LVSEMMILCGEA 391
Q+R +G I+ E +I V PE P + + Q + A R LV+EMMIL GEA
Sbjct: 545 RQYREGRGCIEIPLPEAKIHV-PPEQLDRARPAVTVTRISQWESASRSLVAEMMILTGEA 603
Query: 392 IATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVL 451
+ T RH L
Sbjct: 604 VGT----------------------------------------------------RHAAL 611
Query: 452 GLPGYVQFTSPIRRYMDLLAHYQV 475
L YVQFTSPIRRY D+LAHY +
Sbjct: 612 ALDAYVQFTSPIRRYSDMLAHYNL 635
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 12/52 (23%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP 161
LQ G L+EF+K+ DR +L + PDGKKNW V P+QV+ ++P
Sbjct: 159 LQAGCLVEFEKN-DRGVLGLVTGPDGKKNWFV-----------PKQVSLLLP 198
>gi|33861425|ref|NP_892986.1| ribonuclease II [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|33634002|emb|CAE19327.1| probable ribonuclease II [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 394
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 14/293 (4%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLT+LK + ID + E+DDA S + + K++IH+++P K S D DA +
Sbjct: 2 RDLTNLKTFIIDSKDPKEVDDAFSLELFEGNKKKLWIHISNPCKLFLTDSKIDIDARSKS 61
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+S++L PM P ++ +E +L Q ++ + ++ S++ + DGSI +Y + + IKP Y
Sbjct: 62 SSLYLINQYIPMLPTEI-IEKANLNQNKISDTISASIIFNDDGSINKYEIVEAKIKPKYQ 120
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAI--DTATLETRIKVANPEDPE 363
L YE A E++ L +EE E+ + + +R +QGAI DT + IK N E
Sbjct: 121 LLYEDAEEIIELEPKEEFEIVEIKNLLLNSINYRKKQGAIIFDTPGYKINIKNGNVE--- 177
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA-FAHLP 422
IIN+ Q + +VSE MIL G + Y NN+A PYR + N D
Sbjct: 178 -IINI----QKSISHSIVSESMILMGYVTSLYLFENNIATPYRTH-KINCDAEEILERYK 231
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ ++ S + + M + I K +H LGL Y Q TSP+RRY+DL+ QV
Sbjct: 232 DSDIKYSILKQYMGKSYIT-TKANKHESLGLLKYTQCTSPLRRYLDLIVQRQV 283
>gi|123966182|ref|YP_001011263.1| ribonuclease II [Prochlorococcus marinus str. MIT 9515]
gi|123200548|gb|ABM72156.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9515]
Length = 394
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 154/292 (52%), Gaps = 12/292 (4%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLT+LK + ID + E+DDA S + + K++IH+++P K S D +A +
Sbjct: 2 RDLTNLKTFIIDSENPKEIDDAFSLELIDGSKKKLWIHISNPCKLFSTDSKIDLEAKSKS 61
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+S++L PM P ++ +E +L Q ++ ++ S+ + +GSI EY + + I P Y
Sbjct: 62 SSLYLIDQYIPMLPSEI-IENANLNQNKLSETISASITFNENGSINEYEMLEAKIIPKYQ 120
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
LTYE A E++ L +EE EL + L++R+ QGAI +I + D +
Sbjct: 121 LTYEDAEEIIELEPKEEFELIEIKNLLLKSLKYRITQGAIIFDMPSNKIDII---DGNVV 177
Query: 366 I-NLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS-AFAHLPE 423
I N+Y + + +VSE MIL G + + NN+ PYR Q + N DVS A
Sbjct: 178 INNIY----KNVSQTIVSESMILMGYVTSLFLFKNNIVTPYRTQ-KINCDVSEILAKYKN 232
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ S + + M + I K +H LGL Y Q TSP+RRY+DL+ QV
Sbjct: 233 SDIKFSILKQFMGKSYIT-TKANKHESLGLKMYTQCTSPLRRYLDLIVQRQV 283
>gi|254527033|ref|ZP_05139085.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9202]
gi|221538457|gb|EEE40910.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9202]
Length = 394
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 157/291 (53%), Gaps = 10/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT LK Y ID D+ E+DDA+S + +++G K ++IH+++P K S D +A KR
Sbjct: 2 KDLTDLKTYIIDSDDPHEVDDAIS-LEIKEGNKKYLWIHISNPCKLFLHDSNVDINARKR 60
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P+ + +E +L Q +V ++ S+ + DGSI +Y + +IIKP Y
Sbjct: 61 NSSLYLIDQYVPMLPKDI-LEKANLAQNKVSETISASIEFNDDGSINKYEITEAIIKPKY 119
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A E+L + +EE EL + + + +R +QGAI + +IK+ ED
Sbjct: 120 QLTYDDANEILEIEPKEEIELIEIKKLLEKSITYRKKQGAIIFESPNNKIKLY--EDKII 177
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+ L + + +V+E MIL G + + +LA P+R Q + N + S +
Sbjct: 178 LTKL----EKTISQIIVAESMILMGYVTSLFIDKYDLAAPFRIQ-KINCNPSEILNKYND 232
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
I+K + KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 233 SDIKYIILKQYMGRSYITTKPGNHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|33240419|ref|NP_875361.1| exoribonuclease R [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237946|gb|AAQ00014.1| Exoribonuclease R/ribonuclease II [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 432
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 9/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KD+T+LK Y ID E+DDA+S + D + ++IH+A+P + I S ++AM R
Sbjct: 33 KDITNLKTYTIDDPNTIEIDDAISLEKRGD-KCFLWIHIANPAETISLNSALAQEAMIRS 91
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++L + MFP++L E +SL QG+ A+++ + L G I +S++ + IKP Y
Sbjct: 92 STIYLAESISYMFPKELIREKISLVQGKESLAISLKLELSDKGDINSFSIERTKIKPDYK 151
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
L+YE A E+L +EE EL I R++QGAI E I + I
Sbjct: 152 LSYEEANEILDYQPKEETELIIFYNLINQHYNNRIKQGAIIIEESEGIIFKKDNYYQHKI 211
Query: 366 INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAHLPEG 424
+ P+ RL+SE MI+ GE IA Y + + YR Q P + +D+
Sbjct: 212 ------RKMSPSRRLISESMIIYGELIAEYCFSKKIVIFYRNQSPATLVDIKKLKFFNNN 265
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
V++ + + + I+ KP +H L L Y Q TSP+RRY D + +Q+
Sbjct: 266 HVKNYILKSSLGKSNIEI-KPKKHYSLALNKYSQATSPLRRYCDFINQHQL 315
>gi|291000442|ref|XP_002682788.1| predicted protein [Naegleria gruberi]
gi|284096416|gb|EFC50044.1| predicted protein [Naegleria gruberi]
Length = 975
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 162/318 (50%), Gaps = 27/318 (8%)
Query: 185 RKDLTHLKVYAID-VDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKDL HL V+ ID + E+DD +S + +++G +Y+H+AD T+YI+ GS DK+A K
Sbjct: 537 RKDLRHLTVFTIDEYPKTTEVDDGVS-IEVKNGEYYIYVHIADVTRYIDQGSSIDKEAQK 595
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R +SV+LP + M L+ +SL + ++T S ++SDGS++E+ V +I+
Sbjct: 596 RVSSVYLPDIKFSMIAADLSANILSLSDLKENFSLTFSSKINSDGSLSEWDVFPAILGKV 655
Query: 304 YMLTYESATELLHLNLEEEAELKILSE----AAALRLQWRLQQGAIDTATLETRIKVANP 359
+ Y A ++ ++ E E++ E A LR +R+ +GA TL R KV
Sbjct: 656 KKVDYSMADNIIENTVQAEPEVQQAFEHMVKVANLRFAFRMGKGAT-PPTLTPRPKVYVS 714
Query: 360 EDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID---- 414
+ + I ++ E+ P+ RLV E MI E Y +++A+PYRG D
Sbjct: 715 DSEKNIEVSTTFEELVSPSRRLVQEFMIAANEIGGFYAHQHDIAVPYRGTRTVTTDLPPL 774
Query: 415 ---------VSAFAHLPEGP-----VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFT 460
+S +LPE V S+ + I+ + P H +G YVQ T
Sbjct: 775 LSNEEMQKILSLRTNLPEKDVCELVVDSNKKFYPIAGVCIN-QSPKFHQGIGSANYVQVT 833
Query: 461 SPIRRYMDLLAHYQVGLQ 478
SPIRRY DL+ HYQ+ Q
Sbjct: 834 SPIRRYSDLMVHYQLKAQ 851
>gi|126696330|ref|YP_001091216.1| ribonuclease II [Prochlorococcus marinus str. MIT 9301]
gi|126543373|gb|ABO17615.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9301]
Length = 394
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 154/291 (52%), Gaps = 10/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT LK Y ID D+ E+DDA+S + +++G K ++IH+++P K S D +A KR
Sbjct: 2 KDLTDLKTYIIDSDDPHEVDDAIS-LEIKEGNKKNLWIHISNPCKLFLHDSNVDLNARKR 60
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P + +E +L Q +V ++ ++ + DGSI +Y + +IIKP Y
Sbjct: 61 NSSLYLIDQYVPMLPNDI-LEKANLAQNKVSETISAAIEFNDDGSINKYEITEAIIKPKY 119
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE A E+L + +EE EL + + +R +QGAI + +IK+ ED
Sbjct: 120 QLTYEDANEILEIEPKEEIELIEIKNLLKKSITFRKKQGAIIFESPNNKIKLF--EDKII 177
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+ L + + +V+E MIL G + + NLA +R Q + +
Sbjct: 178 LTKL----EKTISQIIVAESMILMGYVTSLFLDKYNLAAAFRIQKINCNPSEILNRYIDS 233
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 234 DIKYIILKQYMGRSYITI-KPGIHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|123968527|ref|YP_001009385.1| ribonuclease II [Prochlorococcus marinus str. AS9601]
gi|123198637|gb|ABM70278.1| probable ribonuclease II [Prochlorococcus marinus str. AS9601]
Length = 394
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 8/290 (2%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
KDLT+LK Y ID D+ E+DDA+S + + K++IH+++P K S D +A KR
Sbjct: 2 KDLTNLKTYIIDSDDPHEVDDAVSLEIRKGNKKKLWIHISNPCKLFLHESNIDLNARKRN 61
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
+S++L PM P + +E +L Q +V ++ ++ + DGSI +Y + +IIKP Y
Sbjct: 62 SSLYLIDQYVPMLPNDI-LEKANLAQNKVSETISAAIEFNDDGSINKYEITEAIIKPKYQ 120
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
LTYE A E+L + +EE EL + + +++R +QGAI + +IK+ + I
Sbjct: 121 LTYEDANEILEIEPKEEIELLEIKKLLEKSIKFRKKQGAIIFESPNNKIKLY----KDKI 176
Query: 366 INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGP 425
I +E + +++E MIL G + + +LA +R Q + +
Sbjct: 177 ILTKLEKTI--SQIIIAESMILMGYVTSLFIDKYDLAAAFRIQKINCNPSEILNRYNDSD 234
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 235 IKYIILKQYMGRSYIT-TKPGIHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|157413360|ref|YP_001484226.1| ribonuclease II [Prochlorococcus marinus str. MIT 9215]
gi|157387935|gb|ABV50640.1| probable ribonuclease II [Prochlorococcus marinus str. MIT 9215]
Length = 397
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 156/291 (53%), Gaps = 10/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT LK Y ID D+ E+DDA+S + +++G K ++IH+++P K S D +A KR
Sbjct: 5 KDLTDLKTYIIDSDDPHEVDDAIS-LEIKEGNKKYLWIHISNPCKLFLHDSNVDINARKR 63
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P+ + +E +L Q +V ++ ++ + DGSI +Y + +IIKP Y
Sbjct: 64 NSSLYLIDQYVPMLPKDI-LEKANLAQNKVSETISAAIEFNDDGSINKYEITEAIIKPKY 122
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTY+ A E+L + +EE EL + + + +R +QGAI + +IK+ ED
Sbjct: 123 QLTYDDANEILEIEPKEEIELIEIKKLLEKSITYRKKQGAIIFESPNNKIKLY--EDKII 180
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+ L + + +V+E MIL G + + +LA +R Q + +
Sbjct: 181 LTKL----EKTISQIIVAESMILMGYVTSLFIDKYDLAAAFRIQKINCNPSEILNRYNDS 236
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 237 DIKYIILKQYMGKSYIT-TKPGNHESLGLKMYVQCTSPLRRYLDLIIQRQV 286
>gi|78779317|ref|YP_397429.1| ribonuclease II [Prochlorococcus marinus str. MIT 9312]
gi|78712816|gb|ABB49993.1| putative ribonuclease II [Prochlorococcus marinus str. MIT 9312]
Length = 394
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 10/291 (3%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK-VYIHVADPTKYIEPGSLSDKDAMKR 244
KDLT+LK Y ID + E+DDA+S + +++G K ++IH+++P K+ S D DA +
Sbjct: 2 KDLTNLKTYIIDSENPHEVDDAIS-LEIKNGNTKKLWIHISNPCKFFLHDSNVDLDARLK 60
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S++L PM P+ + +E +L Q ++ ++ ++ + DGSI Y + + IKP Y
Sbjct: 61 NSSLYLTDQYVPMLPKNI-LEKANLAQNKISETISGAIEFNDDGSIHNYEITEAKIKPKY 119
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
LTYE A E+L L +EE EL + + +R +QGAI + ++IK+ +
Sbjct: 120 QLTYEDANEILELEPKEEIELIEIKNLLEKSISFRKKQGAIIFESPNSKIKLYKDK---- 175
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I L D+ + +VSE MIL G + + NLA +R Q + +
Sbjct: 176 -IILKKLDKT-ISQSIVSESMILMGYVTSLFIDKYNLAAAFRIQKLNCKPHEILNRYNDS 233
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ + + M + I KP H LGL YVQ TSP+RRY+DL+ QV
Sbjct: 234 EIKYIILKQYMGRSYIT-TKPGIHESLGLKMYVQCTSPLRRYLDLIIQRQV 283
>gi|452820992|gb|EME28028.1| exoribonuclease II [Galdieria sulphuraria]
Length = 769
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 155/307 (50%), Gaps = 12/307 (3%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
++N +R +L L Y+ID E E+DDA+ RL V++HVAD + Y+ L
Sbjct: 347 DNNSSDRIELKQLPCYSIDDSETIEIDDAVGLDRLDSD--YVWVHVADASNYVSSDDLLF 404
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLHSDGSIAEYSVDN 297
+A++RG+S++LPT MFP +A +SL N A++ + DG + + +
Sbjct: 405 DEALRRGSSIYLPTEKIGMFPMNVAELLLSLGSRYGSNYALSFGFRILPDGKLQDIRICK 464
Query: 298 SIIKPTYMLTYESATELLHLNLEE----EAE---LKILSEAAALRLQWRLQQGAIDTATL 350
SIIK + Y +A ++ + + EA+ L+ L + A R +RL GA++
Sbjct: 465 SIIKAPIRIDYPTAESVIAGDTVDPCLMEADIICLQRLHKLAERRRTYRLANGALEFNVN 524
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +KV + +P + LV EMM+ GEA A Y LP+RGQ +
Sbjct: 525 EAEVKVTFDDGEQPSFQFQSHTSERKSSLLVKEMMLAAGEAAALYAQQKGWILPFRGQEK 584
Query: 411 SNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
N+ S +PEG R++ ++K M+ + I + P H LGL Y Q TSPIRR DL
Sbjct: 585 VNLPTDSELNVIPEGVARANKLLKFMKPSFISYH-PTAHSSLGLSCYAQVTSPIRRATDL 643
Query: 470 LAHYQVG 476
L HYQ+
Sbjct: 644 LGHYQLS 650
>gi|282891364|ref|ZP_06299866.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175004|ref|YP_004651814.1| ribonuclease R [Parachlamydia acanthamoebae UV-7]
gi|281498861|gb|EFB41178.1| hypothetical protein pah_c050o169 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479362|emb|CCB85960.1| ribonuclease R [Parachlamydia acanthamoebae UV-7]
Length = 764
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 168/344 (48%), Gaps = 42/344 (12%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
KD + K +L++R+DL ++ + ID D A + DDALS + +DG + +H+AD +
Sbjct: 264 KDFGKVVSKK--DLVDREDLRDVECFTIDPDTAKDFDDALSLAKSEDGHFHLGVHIADVS 321
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD- 287
Y++ GS D +A +RG S + P PM P +L+ SLR N +TVSV +H D
Sbjct: 322 HYVQQGSALDLEASRRGNSTYFPGYCLPMLPHELSSNLCSLRAN--VNRLTVSVHIHFDP 379
Query: 288 -GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGA 344
G++ +Y + S+IK +TY A ++L + E L+++ E + R ++G+
Sbjct: 380 EGNMLDYRISRSVIKSKKRMTYREAKQILDGQKKSPYEPTLQLMVELCYKLKRKRYERGS 439
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I+ A + +KV P+ ++L V D +LV E M+ E IA + LP
Sbjct: 440 IEFAMPDLVVKVNENGVPQG-LDLVV---YDITHQLVEEFMLKANEVIALHLDQEGKNLP 495
Query: 405 YRGQ--PQS------NIDVSAFA-HLPEGPVRS-------------------SAIVKIMR 436
YR P S + SAF HL E P S ++ ++ MR
Sbjct: 496 YRIHDVPSSENMRDFSFLTSAFGFHLSEAPTPSELQKLFDEALETPYGQYLATSYIRRMR 555
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV-GLQA 479
A + H LGL Y FTSPIRRY+DL+ H + GL+A
Sbjct: 556 LAVYS-PANIGHYGLGLTHYCHFTSPIRRYVDLIIHRLLFGLEA 598
>gi|410697657|gb|AFV76725.1| exoribonuclease R [Thermus oshimai JL-2]
Length = 596
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/294 (34%), Positives = 147/294 (50%), Gaps = 27/294 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + + DDA+ A R+ +G ++Y+HVAD + PGS D++A +
Sbjct: 220 ERADLTHLPAFAIDDEGSQDPDDAVWAERVGEG-FRLYVHVADVAALVAPGSPLDEEARR 278
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM PE + +G+ L E A+T +++ +G + E V S ++
Sbjct: 279 RGANLYLPEGTVPMLPEGV-TQGLGLGLQETSPALTFELLVSEEGELLEERVYPSWVR-V 336
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A E L LK LSEA R RL QGA++ A E +++V E
Sbjct: 337 QRLTYREALEAEGLE-----ALKALSEAFRRR---RLAQGAVELALPEVKVRVEG----E 384
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
I L + V E M+L G A A L P+ Q P ++ + L
Sbjct: 385 AIQVLPLPPYESRVW--VREAMLLAGYAAAHLALREGLPFPFATQEAPARRVEGEGLSAL 442
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 443 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQL 488
>gi|297567716|ref|YP_003686687.1| hypothetical protein Mesil_3367 [Meiothermus silvanus DSM 9946]
gi|296852165|gb|ADH65179.1| hypothetical protein Mesil_3367 [Meiothermus silvanus DSM 9946]
Length = 602
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 150/294 (51%), Gaps = 27/294 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL+ YAID + + + DDA+ A R + G ++ +HVAD +EPGSL D++AM
Sbjct: 223 ERTDLTHLEAYAIDDEGSQDPDDAVWAERTEGG-FRLLVHVADVAALVEPGSLLDQEAMH 281
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + A E + L E+ A+T ++ + +G + E + S ++
Sbjct: 282 RGANLYLPEGTVPMLPPR-ATEVLGLGLQEISPALTFALFVSEEGELLEERLFPSWVR-V 339
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
L+Y A E+ L+ LK L+EA Q RL QGA+D A E +++V E
Sbjct: 340 RRLSYREALEVPPLS-----PLKELAEAFG---QKRLSQGALDLALPEVKVQVEGEEIRI 391
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P + A L
Sbjct: 392 TPLPPY------PSRHWVREAMLLAGYAAAHLALREGLPFPFATQEAPSRRVQGEGLAAL 445
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 446 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQL 491
>gi|397904749|ref|ZP_10505644.1| 3'-to-5' exoribonuclease RNase R [Caloramator australicus RC3]
gi|397162201|emb|CCJ32978.1| 3'-to-5' exoribonuclease RNase R [Caloramator australicus RC3]
Length = 706
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 191/409 (46%), Gaps = 71/409 (17%)
Query: 120 KDSDRVLLAVAQRPDGKKN------WMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
KD D+V++ V + P+ ++N ++ ++N I + +P E+F K++
Sbjct: 173 KDGDKVIVEVTKWPEKRRNPEGRIIEVLGNKNKPGIDILSIIKKYNLP--EEFP-KEVEE 229
Query: 174 FL-----QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ + E + R+DL +L++ ID ++A +LDDA+S RL DG+ K+ +H+AD T
Sbjct: 230 YANAIPDEIPEKEIKRRRDLRNLRIVTIDGEDAKDLDDAVSIERLPDGKFKLGVHIADVT 289
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD- 287
Y++ S DK+A+KRGTSV+L PM P+KL+ SL + +T+S V+ D
Sbjct: 290 YYVKEKSPLDKEALKRGTSVYLVDRVIPMLPKKLSNGVCSLNPR--VDRLTLSCVMTIDQ 347
Query: 288 -GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQW 338
G + +Y + S+IK +TY T++L N + + K + E + +
Sbjct: 348 NGKVVDYEIFESVIKTCERMTYTDVTKILRDNDPDLIKRYDYLYEDFKAMEELCNILNRK 407
Query: 339 RLQQGAIDTATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R+Q+GA+D E +I + P + +P + D A R++ E MI+C E IA +
Sbjct: 408 RMQRGALDFDFEECKIILDEKGKPVEVKPY-------ERDIANRIIEEFMIVCNETIAEH 460
Query: 396 GSFNNLALPYRGQPQSNID----VSAFAH--------------------------LPEGP 425
+ N+ YR + + + F H E P
Sbjct: 461 MFWANIPFVYRIHEDPDYEKIMHFNEFVHNLGYKVKFAKDIHPKMLQEVLESAKGKKEQP 520
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ +++ ++ A P G GL Y FTSPIRRY DL+ H
Sbjct: 521 IVDMLLLRSLKQARY---SPECSGHFGLASKYYCHFTSPIRRYPDLIIH 566
>gi|381191004|ref|ZP_09898516.1| ribonuclease [Thermus sp. RL]
gi|380451093|gb|EIA38705.1| ribonuclease [Thermus sp. RL]
Length = 598
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 153/305 (50%), Gaps = 31/305 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A R++ G ++++HVAD + PGS D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAERVEGG-FRLFVHVADVAALVPPGSPLDQEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T M P + E + L EV A+T +V+ +G + E V S ++
Sbjct: 281 RGANLYLPEGTVSMLPPGV-TEALGLGLNEVSPALTFELVVSEEGDLLEERVYPSWVR-V 338
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY+ A L+ E L+ L+EA + RL QGA+D E +++V E
Sbjct: 339 QRLTYKEA-----LDRPELGPLRRLAEAFHRK---RLAQGALDLFLPEVKVRVEGEEIRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRLWVREAMLLAGYAAAHLALREGLPFPFATQEAPSRRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+ A
Sbjct: 445 WE----QRKALKRAQLKAV----PAPHKGLGLPFYAQVTSPLRRYLDLVAHQQL----RA 492
Query: 482 WVSVG 486
W+ G
Sbjct: 493 WLKGG 497
>gi|218295690|ref|ZP_03496486.1| ribonuclease II [Thermus aquaticus Y51MC23]
gi|218243849|gb|EED10376.1| ribonuclease II [Thermus aquaticus Y51MC23]
Length = 598
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 153/304 (50%), Gaps = 35/304 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + + DDAL A R+++G ++++HVAD + PGS D +A++
Sbjct: 222 ERVDLTHLPAFAIDDEGSQDPDDALYAERVEEG-FRLFVHVADVAALVGPGSPLDGEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAM-EGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP PM P LA+ E + L EV A+T +++ +G + + S ++
Sbjct: 281 RGANLYLPEGAVPMLP--LAVTEALGLGLKEVSPALTFELLVSPEGELLREDLYLSWVR- 337
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-- 360
L+Y A L +E A +K L+EA L+ RL QGA+D A E +++V E
Sbjct: 338 VRRLSYREA-----LEVEALAPMKALAEAF---LRKRLAQGALDIALPEVKVRVEGEEIR 389
Query: 361 -DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
P P+ V V E M+L G A A L P+ Q + V
Sbjct: 390 ITPLPLYESRV---------WVREAMLLAGYAAAHLALREGLPFPFATQEAPSHRVEG-- 438
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQA 479
EG A K ++ A + P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 439 ---EGLAAMWAQRKALKRAQLKA-VPAPHRGLGLPLYAQVTSPLRRYLDLVAHQQL---- 490
Query: 480 AAWV 483
AW+
Sbjct: 491 RAWL 494
>gi|386359955|ref|YP_006058200.1| exoribonuclease R [Thermus thermophilus JL-18]
gi|383508982|gb|AFH38414.1| exoribonuclease R [Thermus thermophilus JL-18]
Length = 598
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 148/294 (50%), Gaps = 27/294 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A R++ G ++++HVAD + PGS D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAERVEGG-FRLFVHVADVAALVPPGSPLDEEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++
Sbjct: 281 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVR-V 338
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA R RL GA++ A E +++V E
Sbjct: 339 KRLTYREA-----LGVEALRPLEALAEAFRAR---RLAAGALEIALPEVKVRVEGEEVRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPSRRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
E K M+ A + P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 445 WE-------QRKAMKRAQLKA-VPAPHKGLGLPLYAQVTSPLRRYLDLVAHQQL 490
>gi|347541991|ref|YP_004856627.1| ribonuclease R [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346985026|dbj|BAK80701.1| ribonuclease R [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 696
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 173/351 (49%), Gaps = 50/351 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDG-RIKVYIHVADPTKYIEPGSLS 237
ED+ NR+DL +L + ID +A +LDDA+ + DG K+ +H+AD + Y++ GS
Sbjct: 232 EDDFTNRRDLRNLSIVTIDGSDAKDLDDAVYVKK--DGENYKLSVHIADVSHYVKYGSKL 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P++L+ + SL G ++ +V++S G + Y +
Sbjct: 290 DREALKRGTSVYLIDKVIPMLPKELSNDLCSLNSGTDKLTLSCEMVINSFGEVISYDIFE 349
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETR 353
S+I+ Y LTY++ +++ E +++ + + A + + R ++G+I+ E +
Sbjct: 350 SVIRTKYRLTYDNVQDIIDGKTHEFSDIHDMIFNMKDLAEILNEKRERRGSINFDFPECK 409
Query: 354 IKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
I + ED + + I+ +V + +++ E M+LC E IA + F N PYR + +
Sbjct: 410 ISLN--EDGDILDISAFVR---KFSHKIIEEFMLLCNETIAEHMFFLNYPFPYRIHEEPD 464
Query: 413 ID------------------------------VSAFAHLPEGPVRSSAIVKIMRAAAIDF 442
++ +S F E S I++ M A
Sbjct: 465 MEKIMNLINILHNLNYNLRVNDKVYSNQIQKVLSHFKGRDEEMFLSKFILRSMSKARY-L 523
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEV 493
++ + H L Y FTSPIRRY DL+AH + L S+ IGD++
Sbjct: 524 KECMGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKL------SLKGSIGDKL 568
>gi|297544416|ref|YP_003676718.1| ribonuclease R [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
gi|296842191|gb|ADH60707.1| ribonuclease R [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
Length = 728
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 158/333 (47%), Gaps = 43/333 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R DLT+L ID ++A +LDDA+ +L DG +Y+ +AD + Y++ GS D
Sbjct: 238 EEELKRRVDLTNLNFVTIDGEDAKDLDDAVCVQKLSDGNYILYVSIADVSHYVKEGSHLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KRG SV+ PM P KL+ SL E +TV + ++S G + ++ + S
Sbjct: 298 KEALKRGCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSKGEVVDHEIFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY + +LL N EE + KI+ E A + L+ R ++G++D
Sbjct: 358 IIKSKERMTYTNVYKLLEENHEELKKRYQYLLEDFKIMKELALVLLEKRKRRGSVDFDFP 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P I+ + + + A R++ E M+ E +A + + N+ YR
Sbjct: 418 EAKVIVDEKGRPIDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEH 473
Query: 411 SNID----VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR----- 443
+I+ + F H + G + ++ +++R + R
Sbjct: 474 PDIEKLIAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRA 533
Query: 444 ----KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 534 RYSPEDIGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|434382944|ref|YP_006704727.1| ribonuclease R [Brachyspira pilosicoli WesB]
gi|404431593|emb|CCG57639.1| ribonuclease R [Brachyspira pilosicoli WesB]
Length = 659
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 161/325 (49%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 154 FDRIDLRDIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSSLDREAR 212
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 213 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 272
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 273 SRRLTYDYAQDVLDGVEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 332
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 333 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 385
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ MR A D +
Sbjct: 386 DTFRRIAFNRGYRLTSDTEGNLDFHSFIESIIGKPDEKLLLTLLLRSMRQAIYDINN-IG 444
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 445 HFGLGFEYYTHFTSPIRRYTDLLTH 469
>gi|404475181|ref|YP_006706612.1| ribonuclease R [Brachyspira pilosicoli B2904]
gi|404436670|gb|AFR69864.1| ribonuclease R [Brachyspira pilosicoli B2904]
Length = 659
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 161/325 (49%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 154 FDRIDLRDIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSALDREAR 212
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 213 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 272
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 273 SRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 332
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 333 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 385
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ MR A D +
Sbjct: 386 DTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMRQAIYDINN-IG 444
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 445 HFGLGFEYYTHFTSPIRRYTDLLTH 469
>gi|386827937|ref|ZP_10115044.1| exoribonuclease R [Beggiatoa alba B18LD]
gi|386428821|gb|EIJ42649.1| exoribonuclease R [Beggiatoa alba B18LD]
Length = 658
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 145/286 (50%), Gaps = 15/286 (5%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
++ID +E E+DDALS DG K+ I +ADP+ I+ G + D++AM+RGT+V+LPT
Sbjct: 273 FSIDDEETREVDDALSIETDGDG-WKITIAIADPSAVIQRGDVLDREAMRRGTTVYLPTQ 331
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
T M PE ++ + SL +V +A+ + L D ++ ++ I L Y A +
Sbjct: 332 TVLMLPESVSCDIASLSPQQVRSAILLRAWLDKDANLTNSTISREPIIVRRRLHYSDADK 391
Query: 314 LLHL--NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVE 371
+L + LK L A R RL +GA + E +IKV N + + + +
Sbjct: 392 MLTSAETDNDTVALKQLLTIAQQRQSQRLAEGAFNLQRPELKIKVYNGQ-----VTVEIL 446
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHLPEGPVRSS 429
D+ P+ LV+EMMIL A Y + + + YR Q P I A P+
Sbjct: 447 DKDSPSRLLVAEMMILANHIAAKYAQRHQVPIIYRTQESPLEPITPELLAE----PLGFY 502
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K++R +++ +P H LGL Y Q TSP+RR+ DL+ Q+
Sbjct: 503 KVRKLLRPSSLSL-QPAGHSGLGLSAYTQLTSPLRRFADLVMQRQL 547
>gi|431808689|ref|YP_007235587.1| ribonuclease R [Brachyspira pilosicoli P43/6/78]
gi|430782048|gb|AGA67332.1| ribonuclease R [Brachyspira pilosicoli P43/6/78]
Length = 654
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 162/325 (49%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 149 FDRIDLRNIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSALDREAR 207
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 208 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 267
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 268 SRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 327
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 328 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 380
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ M+ A D +
Sbjct: 381 DTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMKQAIYDINN-IG 439
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 440 HFGLGFEYYTHFTSPIRRYTDLLTH 464
>gi|300870479|ref|YP_003785350.1| ribonuclease R [Brachyspira pilosicoli 95/1000]
gi|300688178|gb|ADK30849.1| ribonuclease R [Brachyspira pilosicoli 95/1000]
Length = 654
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 162/325 (49%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +++ ID ++ + DDA+S +L DG K+ +H+AD + ++ GS D++A
Sbjct: 149 FDRIDLRNIRTVTIDGADSKDFDDAISVEKLNDG-YKIGVHIADVSFFVAEGSALDREAR 207
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV + + + G+I E + S+IK
Sbjct: 208 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFITIDNKGNIKESTFHKSVIKS 267
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ L++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 268 SRRLTYDYAQDVLDGIEQDEDWLLELLKNADDIKKILLQKRIDNGSIEFNLNETQIILDK 327
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E M+L +A
Sbjct: 328 GGNPKD------FFIGERKE-THKIIEEFMLLANCEVAKRLKNIKGAIYRVHDSPDSEKL 380
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR + N+D +F P+ + + +++ M+ A D +
Sbjct: 381 DTFRRIAFNRGYRLTTDNEGNLDFHSFIESIIGKPDEKLLLTLLLRSMKQAIYDINN-IG 439
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 440 HFGLGFEYYTHFTSPIRRYTDLLTH 464
>gi|333993976|ref|YP_004526589.1| ribonuclease II family protein [Treponema azotonutricium ZAS-9]
gi|333735593|gb|AEF81542.1| ribonuclease II family protein [Treponema azotonutricium ZAS-9]
Length = 657
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 149/312 (47%), Gaps = 36/312 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALS--------AMRLQDG-------RIKVYIHVADPT 228
+R DLTHLK YAID +D+ DDA+S +R +G R+ +++HVADP
Sbjct: 253 DRLDLTHLKSYAIDNAWSDDPDDAVSLEGPETSAELRSSEGSPTDSQGRLVLWVHVADPA 312
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMF-PEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
I+PGS +D +A RG ++++P + M PE L + + L +C A++ +VL++
Sbjct: 313 ASIKPGSPADLEARGRGATLYVPEGSARMLAPEALPLFALGLGADGICPALSFKIVLNAA 372
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAI-- 345
SI E + S +K T LTYE A L E EL L AA + RL GAI
Sbjct: 373 FSIVETEIIPSKVKVT-RLTYEEADNL------EGGELAGLFALAARNTERRLDTGAILI 425
Query: 346 --DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
A + + ++ + L AD +V E M+L GE A + N +
Sbjct: 426 DLPDAHIHVHLDKIISQNKVSVEALVPRKSAD----MVRECMVLAGEGAARWALRNKVPF 481
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
P+ GQ + A L + + + MR + KP H LGL Y Q TSP+
Sbjct: 482 PFVGQEAGELPEERLAGL----AGAFQLRRCMRPRTLSA-KPAIHWGLGLDEYTQVTSPL 536
Query: 464 RRYMDLLAHYQV 475
RRY DLL H Q+
Sbjct: 537 RRYTDLLCHQQI 548
>gi|429124613|ref|ZP_19185145.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30446]
gi|426279386|gb|EKV56409.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30446]
Length = 661
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 163/325 (50%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++K ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 152 FDRIDLRNIKTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 210
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G+I E + S+IK
Sbjct: 211 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNKGNIKESTFHKSVIKS 270
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R++ G+I+ ET+I K
Sbjct: 271 SRRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKILLQKRIENGSIEFNLNETQIILDK 330
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 331 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKKLKNIKGSIYRVHDSPDMEKL 383
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR N+D +F P+ + + +++ M+ A D +
Sbjct: 384 DTFTRIAFNRGYRLTKDADGNLDFHSFIQSIMGKPDEKLLLTLLLRSMKQAIYDVNN-IG 442
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 443 HFGLGFEYYTHFTSPIRRYTDLLTH 467
>gi|384431720|ref|YP_005641080.1| ribonuclease II [Thermus thermophilus SG0.5JP17-16]
gi|333967188|gb|AEG33953.1| ribonuclease II [Thermus thermophilus SG0.5JP17-16]
Length = 598
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 148/294 (50%), Gaps = 27/294 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A R++ G ++++HVAD + PGS D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAERVEGG-FRLFVHVADVAALVPPGSPLDEEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++
Sbjct: 281 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVR-V 338
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA + RL GA++ A E +++V E
Sbjct: 339 KRLTYREA-----LGVEALRPLEALAEAFRAK---RLAAGALEIALPEVKVRVEGEEVRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPSRRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 445 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQL 490
>gi|289578141|ref|YP_003476768.1| ribonuclease R [Thermoanaerobacter italicus Ab9]
gi|289527854|gb|ADD02206.1| ribonuclease R [Thermoanaerobacter italicus Ab9]
Length = 728
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 155/333 (46%), Gaps = 43/333 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L R DLT+L ID ++A +LDDA+ +L DG +Y+ +AD + Y++ GS D
Sbjct: 238 EGELKRRVDLTNLNFVTIDGEDAKDLDDAVCVQKLSDGNYILYVSIADVSHYVKEGSHLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KRG SV+ PM P KL+ SL E +TV + ++S G + ++ + S
Sbjct: 298 KEALKRGCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY + +LL N EE + KI+ E A + L+ R ++G++D
Sbjct: 358 IIKSKERMTYTNVYKLLEENDEELKKRYQYLLEDFKIMKELAQVLLEKRKRRGSVDFDFP 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P II + + + A R++ E M+ E +A + + N+ YR
Sbjct: 418 EAKVIVDEKGRPIDIIKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEH 473
Query: 411 SNID----VSAFAH------------------LPE--GPVRSSAIVKIMRAAAIDFRKPV 446
+I+ + F H L E VR + +++ + K
Sbjct: 474 PDIEKLIAFNKFIHNLGYHIKGIEGGQIHPKSLQELIKQVRGKSEQRVVETLLLRSLKRA 533
Query: 447 R-------HGVLGLPGYVQFTSPIRRYMDLLAH 472
R H L Y FTSPIRRY DL+ H
Sbjct: 534 RYSPEDIGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|386811956|ref|ZP_10099181.1| ribonuclease [planctomycete KSU-1]
gi|386404226|dbj|GAB62062.1| ribonuclease [planctomycete KSU-1]
Length = 722
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 47/341 (13%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
K I +++ + E +R DL + ID ++A + DDA+S + + G + +H+AD +
Sbjct: 241 KHIPHYVSQEETG--DRLDLRKNLMITIDPEDAKDFDDAVSLEKNKHGNWLLGVHIADVS 298
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y++P + D +A RGTSV+LP PM PE L+ SLR+GE +V + L G
Sbjct: 299 HYVKPDTAIDDEARYRGTSVYLPGEVIPMLPEVLSNNICSLREGEDRLTKSVLITLDHRG 358
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLH----LNLEEEAE--LKILSEAAALRLQWRLQQ 342
+ + + +SIIK T LTY AT +L+ + + ++A L+ ++ A L + RL +
Sbjct: 359 HLIKAEIKHSIIKVTKRLTYNQATAILNNENTIRIADDAADMLRNMAHLAQLLFENRLNR 418
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVED----QADPAMRLVSEMMILCGEAIATYGSF 398
GAI+ E +K+ + + YV+D + D + +L+ E M+L E +AT+
Sbjct: 419 GAIELDLPEVSLKLDD--------HGYVKDVEKVEKDISHKLIEECMLLANETVATFMFE 470
Query: 399 NNLALPYRGQPQSN-IDVSAFAHLPEG-------PVRSSAIVKIM--------------- 435
+ L R P+ + D+ FA G P +S + K++
Sbjct: 471 KKMPLLCRTHPEPDEEDMWEFASFIRGLEQTKIDPFKSKQLQKLLDKIRGKPEAYTINLV 530
Query: 436 ----RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI RH L L Y FTSPIRRY DL+ H
Sbjct: 531 LLKSMKQAIYAAGEGRHFALALDHYTHFTSPIRRYPDLIVH 571
>gi|431796052|ref|YP_007222956.1| ribonuclease R [Echinicola vietnamensis DSM 17526]
gi|430786817|gb|AGA76946.1| ribonuclease R [Echinicola vietnamensis DSM 17526]
Length = 724
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 174/361 (48%), Gaps = 62/361 (17%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS+ + K+ ++ +RKD + + ID +A + DDA+S RL +G I++ +H+AD T Y
Sbjct: 257 ISDKISKS--DIKSRKDFRGVTTFTIDPADAKDFDDAISYQRLPNGNIEMGVHIADVTHY 314
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDG 288
++P + +K+A R TSV+L T PM PE+L+ SLR E + +T S V L DG
Sbjct: 315 VKPNTPLEKEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPHE--DKLTFSCVFELDEDG 372
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEE-----AELKILSEAAALRLQWRLQQG 343
+ ++ + +II YE A E N++++ +EL +L+ A + R QQG
Sbjct: 373 QVLKHWIGRTIIHSDRRFAYEEAQE----NIDQQEGDFYSELTLLNNLAKKIRKRRFQQG 428
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN---- 399
AI+ T+E + K+ + P + L V+++ D +++ E M+L +A+A + FN
Sbjct: 429 AINFETVEVKFKLDDKGTP---LGLMVKERKD-IHKMIEEFMLLANKAVAEF-VFNKNKG 483
Query: 400 NLALPYRGQPQSNID--------VSAFAH---LPEGPVRSSAIVKIM------------- 435
+ YR +++ F H + E S+ + K+M
Sbjct: 484 DDTFVYRIHDHPDLERLETFANFAKKFGHEVSITEATRVSATLNKLMGEIEGKPEQNLLE 543
Query: 436 ------RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMD-----LLAHYQVGLQAA---A 481
A A +P H L Y FTSPIRRY D LL HY G ++A A
Sbjct: 544 QLAIRSMAKARYTTEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDGGKSADKEA 603
Query: 482 W 482
W
Sbjct: 604 W 604
>gi|384440031|ref|YP_005654755.1| Ribonuclease II [Thermus sp. CCB_US3_UF1]
gi|359291164|gb|AEV16681.1| Ribonuclease II [Thermus sp. CCB_US3_UF1]
Length = 595
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 145/296 (48%), Gaps = 33/296 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLTHL +AID + + + DDA+ A R+++G ++ +HVAD + PGS D++AM+R
Sbjct: 220 REDLTHLPAFAIDDEGSQDPDDAVYAERVEEG-FRLLVHVADVAAMVAPGSPLDQEAMRR 278
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G +++LP T PM P A E + L EV A+T + + +G + E V S ++
Sbjct: 279 GANLYLPEGTVPMLPPG-ATEALGLGLREVSPALTFELWISLEGEVLEERVYPSWVR-VE 336
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE---D 361
LTY A + + LK L E A L+ RL QG +D A E ++++
Sbjct: 337 RLTYGEALGV--------SALKPLKELAQAFLRKRLAQGGLDIALPEVKVRLEGEAIRIT 388
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFA 419
P P + V E M+L G A A L P+ Q P ++ A
Sbjct: 389 PLPPYESRL---------WVREAMLLAGYAAAHLALREGLPFPFATQEAPSRRMEGEGLA 439
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 440 AMWE----QRKALKRAQLKAV----PAPHRGLGLPLYAQVTSPLRRYLDLVAHQQL 487
>gi|404372010|ref|ZP_10977311.1| ribonuclease R [Clostridium sp. 7_2_43FAA]
gi|226911854|gb|EEH97055.1| ribonuclease R [Clostridium sp. 7_2_43FAA]
Length = 745
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +L++ ID ++A +LDDA+S RL +G+ ++ +H+AD + Y+ + DK+A+KR
Sbjct: 245 RKDLRNLRMVTIDGEDAKDLDDAVSIERLDNGKFRLGVHIADVSHYVREKNPLDKEALKR 304
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A++ +V+ +G + ++ ++ S+IK +
Sbjct: 305 ATSVYLIDRVIPMLPKKLSNGICSLNPKVDRLALSCFMVIDKNGKVIQHEIEESVIKTSE 364
Query: 305 MLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N EE + K + E + + R+++GAID E++I +
Sbjct: 365 RMTYTDVTKILENNDEELIKRYDYLVDDFKAMEELCNILREKRIKRGAIDFNFEESKIIL 424
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
+ P I++ D+A A R++ E M++C E IA + + NL YR
Sbjct: 425 NDLGKP---IDIKPYDRA-IANRIIEEFMLVCNETIAEHMFWTNLPFVYRIHEEPDEEKL 480
Query: 407 ----------------GQ---PQSNIDV-SAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV 446
GQ P++ D+ E V S+ +++ M A P
Sbjct: 481 EKFKEFVYNLGYIVRWGQEAHPRALQDILEKVKGKKEETVVSTLLLRSMMQAKY---SPE 537
Query: 447 RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL H
Sbjct: 538 CVGHFGLAAKYYCHFTSPIRRYPDLQIH 565
>gi|429124023|ref|ZP_19184555.1| exoribonuclease R [Brachyspira hampsonii 30446]
gi|426280184|gb|EKV57202.1| exoribonuclease R [Brachyspira hampsonii 30446]
Length = 585
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 160/332 (48%), Gaps = 40/332 (12%)
Query: 175 LQKAEDNL-LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
L+ E N+ +RKD ++K ID + + +LDDA S ++ D KVYIH++D + +IE
Sbjct: 125 LENIESNIESDRKDFRNIKTVTIDSETSKDLDDAFSIEKIDDNNYKVYIHISDVSHFIEL 184
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY 293
S D +A KRG S +L Y MFPE L+ +SL + + A+T+ ++ D +
Sbjct: 185 DSPLDLEARKRGNSTYLIDNVYNMFPEVLSNNIISLNENDNRFALTIIADINDDKGVLSS 244
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEEEAE---LKILSEAAALR--LQWRLQQG-AIDT 347
SV S+IK L+Y A +LL EEE E L++L A ++ L + ++G ++
Sbjct: 245 SVCKSVIKSDRKLSYNYAEKLLK--REEEDEKWLLELLDNALNIKNILYKKRKEGRGVEF 302
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS---------- 397
+ +I + + P I Y E++ + +M +V E+M+LC IA S
Sbjct: 303 DNQDIKIILNDEGIP---IEFYAEEKKE-SMSIVEELMLLCNSEIAKKLSNYDGVIYRYH 358
Query: 398 -------FNNLAL-------PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR 443
FNN + + P + D+ F +G + +V+++ +
Sbjct: 359 GLPDEYRFNNFKILAHTKGYELKQNPDKSYDIKGFIDNIKGKPEENLLVQVLLRSMTPSS 418
Query: 444 KPV---RHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LGL Y FTSPIRRY DLL H
Sbjct: 419 YSIINKSHFGLGLDYYTYFTSPIRRYADLLVH 450
>gi|414879756|tpg|DAA56887.1| TPA: hypothetical protein ZEAMMB73_060871 [Zea mays]
Length = 363
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%)
Query: 61 RSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKV-SSGELLEDKLENQVLQKGLLLEFK 119
R G +S HS+VD VM+EL + R+ AK+ + + EL ++K+ + LQKGLLLEF+
Sbjct: 47 RGGCRSRLAHSIVDLVMEELRSRRRVRVS-AKIGLQGTKELPDNKIVKRTLQKGLLLEFQ 105
Query: 120 KDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAE 179
KD +R LLAV +RPDGKKNWMV DQNG SIKPQQVT+VVPG+ FD+ I FL+K +
Sbjct: 106 KDPERSLLAVVERPDGKKNWMVTDQNGVMSSIKPQQVTYVVPGIMNFDYSKIDEFLEKTQ 165
Query: 180 DNLLNRKDLTHLKVYAIDVDEADE 203
NLL D T L+ +++ E D+
Sbjct: 166 -NLL---DPTILECAWMELSEKDK 185
>gi|296125474|ref|YP_003632726.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
murdochii DSM 12563]
gi|296017290|gb|ADG70527.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
murdochii DSM 12563]
Length = 665
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 163/325 (50%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +++ ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 154 FDRIDLRNIRTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 212
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + ++G++ E + S+IK
Sbjct: 213 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNNGNVKESTFHKSVIKS 272
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
LTY+ A ++L + +E+ +++L A ++ LQ R++ G+I+ ET+I K
Sbjct: 273 DRRLTYDYAQDVLDGIEQDEDWLIELLKNADDVKKILLQKRIENGSIEFNLNETQIILDK 332
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--------------------Y 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 333 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDIEKL 385
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR N+D +F P+ + + +++ M+ A D +
Sbjct: 386 DTFTRIAFNRGYRLTKDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNN-IG 444
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 445 HFGLGFEYYTHFTSPIRRYTDLLTH 469
>gi|445062663|ref|ZP_21375014.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30599]
gi|444505974|gb|ELV06385.1| VacB and RNase II family 3'-5' exoribonuclease [Brachyspira
hampsonii 30599]
Length = 662
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 172/365 (47%), Gaps = 63/365 (17%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL +K ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 153 FDRIDLRDIKTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 211
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G++ E + S+IK
Sbjct: 212 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNIGNVKESTFHKSVIKS 271
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R++ G+I+ ET+I K
Sbjct: 272 SRRLTYDYAQDVLDGIEQDEDWLIELLKNADDVKKILLQKRIENGSIEFNLNETQIILDK 331
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 332 GGNPKD------FFISERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDIEKL 384
Query: 396 GSFNNLALPYRG-----QPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+F +A RG N+D +F P+ + + +++ M+ A D +
Sbjct: 385 DTFTRIAFN-RGYKLTKDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAVYDVNN-I 442
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH-----------------YQVGLQAAAWVSVGAQI 489
H LG Y FTSPIRRY DLL H Q + +A W S ++
Sbjct: 443 GHFGLGFEYYTHFTSPIRRYTDLLTHRLLKFSLEGINNLKPTMQQFYINSAQWCSKTERV 502
Query: 490 GDEVE 494
E E
Sbjct: 503 AVECE 507
>gi|326800487|ref|YP_004318306.1| ribonuclease R [Sphingobacterium sp. 21]
gi|326551251|gb|ADZ79636.1| ribonuclease R [Sphingobacterium sp. 21]
Length = 711
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 178/407 (43%), Gaps = 61/407 (14%)
Query: 120 KDSDRVLLAVAQRPDGKKN------WMVYDQNGASCSIKPQQVTFVVP-----GVEKFDH 168
KD D+V++ + P G KN ++ Q + + F P VE+
Sbjct: 184 KDQDKVVVTITDWPQGSKNPVGRVKHVLGKQGENNTEMNAILADFGFPLAFPTAVEQEAD 243
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
K I + E + RKD + + ID +A + DDA+S ++ DG +V +H+AD T
Sbjct: 244 K-IEEVISPVE--ISRRKDFRSVLTFTIDPADAKDFDDAISFRKMPDGNYEVGVHIADVT 300
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y++P S DK+A +RGTSV+L PM PE+L+ SLR E + ++
Sbjct: 301 HYVQPDSALDKEAYERGTSVYLVDRVIPMLPERLSNNLCSLRPNEDKLCFSAVFIIDDQA 360
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEE--AELKILSEAAALRLQWRLQQGAID 346
+ E +II TYE A E++ N E + EL IL++ A + + +QGAI+
Sbjct: 361 HVKEQWFGRTIIHSDRRFTYEEAQEIIE-NKEGQFSEELLILNKLAYILRDRKFKQGAIN 419
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNL 401
+ E + K+ E+ +P + +Y +++ D A +L+ + M+L +A + N L
Sbjct: 420 FESTEVKFKL--DENGKP-LGVYTKERKD-AHKLIEDFMLLANRKVAEFIGKQGKGKNKL 475
Query: 402 ALPYRGQPQSNID---------------------------VSAFAHLPEGPVRSSAIVKI 434
YR N + ++A H EG + + +
Sbjct: 476 PFVYRSHDAPNEESLASFAQFAARFGYKVSTKSEKEIAKSLNALMHDVEGTKEQNVLTTL 535
Query: 435 M---RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMD-----LLAHY 473
A AI K H L Y FTSPIRRY D LLAHY
Sbjct: 536 AIRSMAKAIYTTKKHSHYGLAFDYYTHFTSPIRRYPDVMVHRLLAHY 582
>gi|435854762|ref|YP_007316081.1| ribonuclease R [Halobacteroides halobius DSM 5150]
gi|433671173|gb|AGB41988.1| ribonuclease R [Halobacteroides halobius DSM 5150]
Length = 707
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 49/330 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +K+ ID ++A + DDA+S + L+ ++++ +H+AD T Y+ PG++ D++A KR
Sbjct: 244 RKDLRDVKMVTIDGEDAKDYDDAVSIVNLEGDKVRLGVHIADVTHYVRPGTVLDEEARKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD---GSIAEYSVDNSIIK 301
GTS++L PM PEKL+ SLR + +SV++ D G + +Y + SII+
Sbjct: 304 GTSIYLVDRVIPMLPEKLSNNLCSLRSN--VERLAMSVLMDFDLETGELLDYEMTESIIE 361
Query: 302 PTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETR 353
+ LTY ++L EE +LK++++ + + R ++G++D E
Sbjct: 362 VNHRLTYNKVNKILMKEDEELISEYQDVVEKLKLMTQLSTKLKEIRSERGSVDFDFSE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I V ED +PI V+ + A +L+ + MI E +A + YR Q N+
Sbjct: 420 INVILDEDGKPID--IVKAERGVAEKLIEDFMIKTNEVVAEAMYDREIPFIYRVHEQPNM 477
Query: 414 ----DVSAFAH---------------------------LPEGPVRSSAIVKIMRAAAIDF 442
D++ F H PE V S+ +++ M+ A
Sbjct: 478 EKLTDLNEFLHNLGYHIKGLKEEVHPKALQTVLNKVEGEPEEKVVSTVLLRTMQQAHYHI 537
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 538 QN-IGHFGLASDCYSHFTSPIRRYPDLMIH 566
>gi|320450919|ref|YP_004203015.1| ribonuclease II family protein [Thermus scotoductus SA-01]
gi|320151088|gb|ADW22466.1| ribonuclease II family protein [Thermus scotoductus SA-01]
Length = 592
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 152/296 (51%), Gaps = 31/296 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL YAID +E+ + DDA+ A R+ +G ++++HVAD +EP S D++AM+
Sbjct: 216 KRVDLTHLPAYAIDDEESQDPDDAVYAERVPEG-FQLWVHVADVAALVEPFSPLDQEAMR 274
Query: 244 RGTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP T PM P E + G+ L+ EV A+T + + +G I E V S ++
Sbjct: 275 RGANLYLPEGTVPMLPQEATWVLGLGLK--EVSPALTFRLKVSGEGEILEEEVFPSWVR- 331
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-D 361
L+Y+ A L +EE A ++ L A A R + RL QG +D E ++++ E
Sbjct: 332 VRRLSYQEA-----LGVEELAPMRDL--ALAFRRK-RLAQGGLDLRLPEVKVRLEGQEVR 383
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFA 419
P+ +A + V E M L G A A L P+ Q P ++ +
Sbjct: 384 IRPL-------EAYESRIWVQEAMHLAGYAAAHLALREGLPFPFATQEAPARRVEGEGLS 436
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 437 AMWE----QRKALKRAQLKAV----PAPHRGLGLPLYAQVTSPLRRYLDLVAHQQL 484
>gi|237756945|ref|ZP_04585413.1| ribonuclease R [Sulfurihydrogenibium yellowstonense SS-5]
gi|237690896|gb|EEP60036.1| ribonuclease R [Sulfurihydrogenibium yellowstonense SS-5]
Length = 701
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 48/329 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT + ID + A + DDA+ A+ + + ++Y+H+AD + Y++ GS DK+A +
Sbjct: 242 NRKDLTKQICFTIDPESARDHDDAV-AIEKEGDKYRLYVHIADVSHYVKEGSAIDKEAFQ 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA + SL+ E A T +++ G++ EY + S+I+
Sbjct: 301 RGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIESK 360
Query: 304 YMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
LTY+ A ++ E E LK + E A + ++ + ++G+ID E++I
Sbjct: 361 AKLTYDQALGIIFGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQILF 420
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+ NP D P + A R++ E MI+ E +A + N YR + +
Sbjct: 421 DQYGNPYDVVPY-------ERHLAHRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKL 473
Query: 414 D-VSAFAHL----------PEGPVRSSAIVKIMRAA------------AIDFRKPVRH-- 448
+ V AF L P+ V S I KI+ A A+ K R+
Sbjct: 474 EKVMAFVDLMAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSP 533
Query: 449 ---GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY D+ H
Sbjct: 534 ENIGHFGLASECYTHFTSPIRRYADVWVH 562
>gi|374814267|ref|ZP_09718004.1| ribonuclease II family protein [Treponema primitia ZAS-1]
Length = 642
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 153/327 (46%), Gaps = 33/327 (10%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL+ YAID +++ DDA+S + G +Y+H+ADP I PGS +D +A R
Sbjct: 238 RTDLTHLEAYAIDSPWSNDPDDAISLEKHPSGDT-LYVHIADPAASILPGSPADIEARGR 296
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSL-------------RQGEVCNAVTVSVVLHSDGSI 290
G +++LP M E L++ + L R G+ C A+T ++L DGSI
Sbjct: 297 GATLYLPEGAVRMLTDEALSLFALGLSDGPTPRTGQVCPRTGQACPALTFKLILGEDGSI 356
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
E + S+++ T L+Y A + E L LS A Q R+ GA+
Sbjct: 357 LETDIFPSLVRIT-RLSYAQA----DVTAGAETVLAGLSRVAERNKQRRIAAGAVMIDLP 411
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E I V + +I Y + V E M+L GE A + +L P+ Q
Sbjct: 412 EAHISVHEEKVAINLIETYKSAET------VRECMLLAGEGAARWALQRHLPFPFVSQET 465
Query: 411 SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLL 470
+ A LP G S + + MR + KP H LGL Y Q TSP+RRY DLL
Sbjct: 466 GELPT---APLP-GMAGSYQLRRCMRPRTLS-TKPGLHWGLGLEQYTQVTSPLRRYTDLL 520
Query: 471 AHYQVG--LQAAAWVSVGAQIGDEVEV 495
AH Q+ L+ A+ ++ +E+ V
Sbjct: 521 AHQQIRAFLKTGAYGDCAPRVEEEILV 547
>gi|398308309|ref|ZP_10511783.1| ribonuclease R [Bacillus mojavensis RO-H-1]
Length = 778
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+AM+RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEAMERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGEVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAEILREKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|343084834|ref|YP_004774129.1| ribonuclease R [Cyclobacterium marinum DSM 745]
gi|342353368|gb|AEL25898.1| ribonuclease R [Cyclobacterium marinum DSM 745]
Length = 725
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 72/345 (20%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + RKD + + ID +A + DDA+S L +G +++ +H+AD T Y++P +L +
Sbjct: 264 EDEIKKRKDFRDIDTFTIDPADAKDFDDAISFRYLDNGNMEIGVHIADVTHYVKPKTLME 323
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A R TSV+L T PM PE+L+ SLR E + +T S V + ++ +
Sbjct: 324 KEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEITDQAEVKDFWIG 381
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I TYE A E + E A+ LKI S A LR R ++GAI+ T+E +
Sbjct: 382 RTVIHSNRRFTYEEAQENMDNESGEYAKDLLKINSLAKLLR-SARFKKGAINFETVEVKF 440
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------- 395
++ P +I ++++ D +L+ E M+L + +ATY
Sbjct: 441 QLDESGTPTGLI---IKERKD-VHKLIEEFMLLANKTVATYIYNKNKGKSTFVYRVHDYP 496
Query: 396 -----GSFNNLALPYR-----------------------GQPQSNIDVSAFAHLPEGPVR 427
+F+N A + G+P+ NI L + +R
Sbjct: 497 DLEKLATFSNFAKKFGHEIKILDEKKVSNSLNKLMDDIVGKPEQNI-------LEQLAIR 549
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
S A K +P +H L Y FTSPIRRY D++ H
Sbjct: 550 SMAKAKYT-------TEPKQHFGLAFDHYTHFTSPIRRYPDMMVH 587
>gi|320116181|ref|YP_004186340.1| ribonuclease R [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|319929272|gb|ADV79957.1| ribonuclease R [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 720
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 244 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|167037766|ref|YP_001665344.1| ribonuclease R [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|166856600|gb|ABY95008.1| ribonuclease R [Thermoanaerobacter pseudethanolicus ATCC 33223]
Length = 722
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 246 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 306 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 365
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 366 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 426 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 481
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 482 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 541
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 542 IGHYALATQYYTHFTSPIRRYPDLIIH 568
>gi|167039994|ref|YP_001662979.1| ribonuclease R [Thermoanaerobacter sp. X514]
gi|166854234|gb|ABY92643.1| ribonuclease R [Thermoanaerobacter sp. X514]
Length = 722
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 246 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 306 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 365
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 366 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 426 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 481
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 482 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 541
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 542 IGHYALATQYYTHFTSPIRRYPDLIIH 568
>gi|300914084|ref|ZP_07131400.1| ribonuclease R [Thermoanaerobacter sp. X561]
gi|307724683|ref|YP_003904434.1| ribonuclease R [Thermoanaerobacter sp. X513]
gi|300889019|gb|EFK84165.1| ribonuclease R [Thermoanaerobacter sp. X561]
gi|307581744|gb|ADN55143.1| ribonuclease R [Thermoanaerobacter sp. X513]
Length = 720
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 244 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|188997015|ref|YP_001931266.1| ribonuclease R [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932082|gb|ACD66712.1| ribonuclease R [Sulfurihydrogenibium sp. YO3AOP1]
Length = 701
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT + ID + A + DDA+ A+ + + ++Y+H+AD + Y++ GS+ DK+A +
Sbjct: 242 NRKDLTKQICFTIDPESARDHDDAV-AIEKEGDKYRLYVHIADVSHYVKEGSVIDKEAFQ 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA + SL+ E A T +++ G++ EY + S+I+
Sbjct: 301 RGNTYYLPERALHMLPERLASQLCSLKPREKRYAFTCEMLIDKKGNVVEYDIYESVIESK 360
Query: 304 YMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
LTY+ A ++ E E LK + E A + ++ + ++G+ID E++I
Sbjct: 361 AKLTYDQALGIILGQPELEKAFPYLVKPLKHMKELAEILMKAKEKRGSIDFDMPESQILF 420
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+ NP D P + A R++ E MI+ E +A + N YR + +
Sbjct: 421 DQYGNPYDVVPY-------ERHLANRIIEEFMIIANETVAKHMEKNGYPFIYRVHEKPKL 473
Query: 414 D-VSAFAHL----------PEGPVRSSAIVKIMRAA------------AIDFRKPVRH-- 448
+ V AF L P+ V S I KI+ A A+ K R+
Sbjct: 474 EKVMAFVDLIAGLGYKVEYPKKDVDSKFIQKIIEMAVGTPEESLVRFLALRTMKQARYSP 533
Query: 449 ---GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY D+ H
Sbjct: 534 ENIGHFGLASECYTHFTSPIRRYADVWVH 562
>gi|256751960|ref|ZP_05492830.1| ribonuclease R [Thermoanaerobacter ethanolicus CCSD1]
gi|256749165|gb|EEU62199.1| ribonuclease R [Thermoanaerobacter ethanolicus CCSD1]
Length = 720
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L ID ++A +LDDA+ +LQDG +Y+ +AD + Y++ G DK+A+KR
Sbjct: 244 RVDLTDLDFVTIDGEDAKDLDDAVCVQKLQDGNYLLYVSIADVSHYVKEGLNLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P ++ + + + A R++ E M++ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDVVKV----ERNIAHRIIEEFMLVANETVAEHMHWVNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|294507542|ref|YP_003571600.1| ribonuclease R [Salinibacter ruber M8]
gi|294343870|emb|CBH24648.1| ribonuclease R [Salinibacter ruber M8]
Length = 666
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + R+DL V+ ID +A + DDA+ L +G +V +H+AD + Y+EP + D
Sbjct: 197 EDEIERRRDLRDKPVFTIDPVDAKDFDDAIHVEELDNGNYEVGVHIADVSHYVEPDTAID 256
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A++RGTSV+L T PM PEKL+ + SLR E A ++ + L ++G + +Y + +
Sbjct: 257 AEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVDYEICET 316
Query: 299 IIKPTYMLTYESATELLHLNLEEE---AELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY+ A + + ++ A++ + A + R+Q+GAID + E +
Sbjct: 317 VIHSKERLTYDRAQDYIEGGYPDDKMAADVVQANRLAKTITRRRMQEGAIDFGSDEVNVI 376
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------------GSFNNLA 402
+ + P I V + A RL+ E M+L +A + G+ L
Sbjct: 377 LDDDGTPTNI----VRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTDEPLP 432
Query: 403 LPYRGQPQSNID--------VSAFAH---LPEGPVRSS---AIVK----------IMRAA 438
YR + + V F H L +G RSS A++ I+RAA
Sbjct: 433 FVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVIVRAA 492
Query: 439 AIDFRKP------VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K + H LG Y FTSPIRRY DL+ H
Sbjct: 493 LRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVH 532
>gi|83815922|ref|YP_445650.1| ribonuclease R [Salinibacter ruber DSM 13855]
gi|83757316|gb|ABC45429.1| ribonuclease R [Salinibacter ruber DSM 13855]
Length = 666
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/340 (29%), Positives = 159/340 (46%), Gaps = 50/340 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + R+DL V+ ID +A + DDA+ L +G +V +H+AD + Y+EP + D
Sbjct: 197 EDEIERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVEPDTAID 256
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A++RGTSV+L T PM PEKL+ + SLR E A ++ + L ++G + +Y + +
Sbjct: 257 AEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILMELTTEGDVVDYEICET 316
Query: 299 IIKPTYMLTYESATELLHLNLEEE---AELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+I LTY+ A + + ++ A++ + A + R+Q+GAID + E +
Sbjct: 317 VIHSKERLTYDRAQDYIEGGYPDDKMAADVVQANRLAKTITRRRMQEGAIDFGSDEVNVI 376
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------------GSFNNLA 402
+ + P I V + A RL+ E M+L +A + G+ L
Sbjct: 377 LDDDGTPTNI----VRKERLQANRLIEEFMLLANRTVAKHIAAPEHVDRHRSNGTDEPLP 432
Query: 403 LPYRGQPQSNID--------VSAFAH---LPEGPVRSS---AIVK----------IMRAA 438
YR + + V F H L +G RSS A++ I+RAA
Sbjct: 433 FVYRVHDSPDSEEIQQLAEYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVIVRAA 492
Query: 439 AIDFRKP------VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K + H LG Y FTSPIRRY DL+ H
Sbjct: 493 LRAMSKAEYAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVH 532
>gi|320161361|ref|YP_004174585.1| putative ribonuclease [Anaerolinea thermophila UNI-1]
gi|319995214|dbj|BAJ63985.1| putative ribonuclease [Anaerolinea thermophila UNI-1]
Length = 608
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 151/298 (50%), Gaps = 37/298 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLTHL +AID ++ DDA+S +GRI ++H+ADP I P + +D++A R
Sbjct: 231 RKDLTHLLSFAIDDAGSEVPDDAIS---FDEGRI--WVHIADPAALILPDTQADREARAR 285
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S+ LP T M E A+ L + E+ A+++ + L G I + S ++
Sbjct: 286 GESLHLPEGTVHMLSED-AISKFGLGKQEISPALSIGICLSPSGEIQNVEIVPSRVR-VS 343
Query: 305 MLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
LTY++A L+ L E E L EA RL+ GA++ E R+KV +
Sbjct: 344 RLTYQNAEVLMDAPLFSEIEKWLGFHREA-------RLRHGAVELDLPEVRVKVDEHQKV 396
Query: 363 E--PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAF 418
E P+++L + R+V E M+L G AIA + N+ +P+ Q P+ +
Sbjct: 397 EIQPVLSLR-------SRRMVEEAMLLAGTAIAQWCIERNVPVPFTIQEAPEQRVSGDTL 449
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRK-PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A + A+ + M+ + +R P H LGL YVQ TSP+RRY+DL+ H Q+
Sbjct: 450 ADM-------YAMRRWMKRS--QYRSAPAEHAGLGLKFYVQGTSPLRRYLDLVVHQQI 498
>gi|328953450|ref|YP_004370784.1| ribonuclease II [Desulfobacca acetoxidans DSM 11109]
gi|328453774|gb|AEB09603.1| ribonuclease II [Desulfobacca acetoxidans DSM 11109]
Length = 663
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 150/296 (50%), Gaps = 22/296 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT L+++ ID + + DDALS ++ +G ++ IH+ D + YI G+ D+ A++R
Sbjct: 273 RVDLTGLQLFTIDGERTRDFDDALSLEKIPEG-WRLGIHITDVSTYIPLGTPLDQAALER 331
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS++LP PM PE L+ +SL AV+ V L ++G I YS+ S+++ +
Sbjct: 332 GTSLYLPDRRIPMLPEALSENTLSLLAQHPRRAVSFLVNLTAEGEIQNYSILLSMVQVSK 391
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
TY LL N E A L L+ A LR + RL QG + + I D
Sbjct: 392 RFTYHEVDYLLAQN-ERLAALHRLT--ACLR-ERRLSQGGVQLQFPDVTILT----DASG 443
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQ---SNIDVSAFA 419
+ + +ED P+ LVSE MIL A Y + + + YR Q P+ ++ +
Sbjct: 444 EVRVEIEDTETPSHELVSEAMILANYLGAQYLAERKVPVLYRSQAPPREELEKVETGSLF 503
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
L + R S ++ +D +P H LGLP Y +SPIRRY+DL+ H Q+
Sbjct: 504 QLWQNRRRLSRVL-------LDL-EPQPHWGLGLPVYTTISSPIRRYLDLIIHRQL 551
>gi|55981503|ref|YP_144800.1| ribonuclease II family protein [Thermus thermophilus HB8]
gi|55772916|dbj|BAD71357.1| ribonuclease II family protein [Thermus thermophilus HB8]
Length = 598
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 148/294 (50%), Gaps = 27/294 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A +++ G ++++HVAD + P S D++A++
Sbjct: 222 DRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGG-FRLFVHVADVAALVPPKSPLDEEALR 280
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++ T
Sbjct: 281 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVRVT 339
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA + RL GA++ A E +++V E
Sbjct: 340 -RLTYREA-----LGVEALRPLEALAEAFRAK---RLAAGALEIALPEVKVRVEGEEVRI 390
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 391 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPARRVEGEGLAAM 444
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 445 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQL 490
>gi|299143290|ref|ZP_07036370.1| ribonuclease R [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517775|gb|EFI41514.1| ribonuclease R [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 699
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 162/332 (48%), Gaps = 44/332 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AE +L +R DL + + ID ++ + DDA+S +L++G ++ +H+AD + Y++
Sbjct: 230 AEKDLKDRLDLRDITTFTIDGADSKDFDDAVSIEKLENGGYRLGVHIADVSHYVKESDEI 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSV 295
DK+A +RG SV+L PM PE+L+ SL +G + +T+SV+++ D + + E+ +
Sbjct: 290 DKNAYERGNSVYLIDKVIPMLPEELSNGICSLNEG--VDRLTLSVMINLDNNAKVIEHQI 347
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-----LSEAAALRL-QWRLQQGAIDTAT 349
++I+ + L Y++ ++L+ N+ +E+ L I L AL+L + R+ +G+ID
Sbjct: 348 VPAVIRSSKRLIYDNVSDLIEKNIVDESVLNIKDDLLLMNELALKLRKRRMDRGSIDFDF 407
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E +I V N P II ++ A +L+ E M+LC E +A + L YR
Sbjct: 408 PEAKITVDNNGRPTDII----REERRSANKLIEEFMLLCNETVAEQYFWMELPFIYRIHE 463
Query: 410 Q----------------------SNIDVSAFAHLPEGP-------VRSSAIVKIMRAAAI 440
+ N+D L E S+ I++ M+ A
Sbjct: 464 EPDEEKIESLNKILRHLGLKLNTQNLDSKEVQSLIEKVKGKEFELFVSTLILRSMKKARY 523
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + G L Y FTSPIRRY DL H
Sbjct: 524 SEQNDIHFG-LAAKYYSHFTSPIRRYADLTIH 554
>gi|328950676|ref|YP_004368011.1| ribonuclease R [Marinithermus hydrothermalis DSM 14884]
gi|328451000|gb|AEB11901.1| ribonuclease R [Marinithermus hydrothermalis DSM 14884]
Length = 780
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 149/328 (45%), Gaps = 39/328 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L R D HL V+ ID +A + DDA+ R ++G +V IH+AD + Y+ GS D
Sbjct: 234 EAELHRRADFRHLNVFTIDGADAKDFDDAIHIERYKNGNYRVGIHIADVSHYVPEGSALD 293
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+LP PM PEKL+ SL GE ++V V L G + YS
Sbjct: 294 QEAFERGTSVYLPGRVLPMLPEKLSNGVCSLVPGEDRLVLSVLVDLTPSGEVKRYSFKEG 353
Query: 299 IIKPTYMLTYESATELLHLN-LEE-----EAELKILSEAAALRLQWRLQQGAIDTATLET 352
+I+ LTY+ + L E EA+L+ L RL+QGA+D + E
Sbjct: 354 VIRSKARLTYDQVQAFFEGDPLPEAARFLEADLRDLFALTQTLKARRLEQGALDFSFTEV 413
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ V DP+ ++L + + A L+ E+M+L +A + + + YR
Sbjct: 414 KVDV----DPDGTLHLIPIAERE-ARSLIEELMLLANRIVAKHLADKGIPALYRVHEDPA 468
Query: 413 ID-----VSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKP------------------ 445
D V A A LP A+ +++ AA P
Sbjct: 469 EDRYRALVEALARMGYKLPGKEPDPKALQQVLHQAAGRPEAPAVSMLLLRSLSLARYAPE 528
Query: 446 -VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y+ FTSPIRRY DL+ H
Sbjct: 529 NLGHFGLAFEDYLHFTSPIRRYPDLVVH 556
>gi|149196829|ref|ZP_01873882.1| exoribonuclease, VacB/RNB family protein [Lentisphaera araneosa
HTCC2155]
gi|149139939|gb|EDM28339.1| exoribonuclease, VacB/RNB family protein [Lentisphaera araneosa
HTCC2155]
Length = 668
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 17/299 (5%)
Query: 184 NRKDLTH-LKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R DL ++ID + ++DD LS L++ K+ IH+AD + YI S D +A
Sbjct: 264 GRNDLGEDFYCFSIDDESTSDVDDVLSVEYLENDLFKIGIHIADVSAYIAKASTLDLEAE 323
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
R TS++LPT T MFP +LA SL G A++ L SDG + ++ S+I+
Sbjct: 324 HRATSIYLPTGTVNMFPAELATHKASLLPGSPKPALSYYATLTSDGELRSTHIERSLIQV 383
Query: 303 TYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+ L+Y +L + E + +LK IL+ A + R ++GAI E +I + +
Sbjct: 384 SEKLSYRYCDGVLEGDEEAKEDLKKDLDILANLADELILKRQEKGAITFNRPENKITIVD 443
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAF 418
++++ + LV E MIL A + N + YR Q +S+ V+
Sbjct: 444 -----GVVDITEVRAHSKSRALVGEFMILANNLGAQFCRDNEIPALYRVQEKSDEQVA-- 496
Query: 419 AHLPE--GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+PE PV A +K M+ + + P H LGL Y QFTSPIRRY DL+ Q+
Sbjct: 497 --MPETYDPVSFDAAIKCMKKSRMT-PYPSDHAGLGLDCYTQFTSPIRRYSDLMMQRQL 552
>gi|384208590|ref|YP_005594310.1| VacB, Exoribonuclease R [Brachyspira intermedia PWS/A]
gi|343386240|gb|AEM21730.1| VacB, Exoribonuclease R [Brachyspira intermedia PWS/A]
Length = 663
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L DG K+ IH+AD + ++ GS D++A
Sbjct: 152 FDRIDLRDIRTVTIDGADSKDFDDAISIEKLNDG-YKLGIHIADVSHFVVMGSALDREAR 210
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G++ E + S+IK
Sbjct: 211 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNQGNVKESTFHKSVIKS 270
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 271 SRRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDK 330
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 331 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDQEKL 383
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR N+D +F P+ + + +++ M+ A D +
Sbjct: 384 DTFTRIAFNRGYRVTRDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNN-IG 442
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 443 HFGLGFEYYTHFTSPIRRYTDLLTH 467
>gi|46199473|ref|YP_005140.1| ribonuclease [Thermus thermophilus HB27]
gi|46197099|gb|AAS81513.1| putative ribonuclease [Thermus thermophilus HB27]
Length = 599
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 148/294 (50%), Gaps = 27/294 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLTHL +AID + + + DDA+ A +++ G ++++HVAD + P S D++A++
Sbjct: 223 DRVDLTHLPAFAIDDEGSQDPDDAVFAEKVEGG-FRLFVHVADVAALVPPKSPLDEEALR 281
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG +++LP T PM P + E + L EV A+T + + +G + E V S ++ T
Sbjct: 282 RGANLYLPEGTVPMLPPAV-TEALGLGLREVSPALTFELWVSEEGELLEERVYPSWVRVT 340
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY A L +E L+ L+EA + RL GA++ A E +++V E
Sbjct: 341 -RLTYREA-----LGVEALRPLEALAEAFRAK---RLAAGALEIALPEVKVRVEGEEVRI 391
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHL 421
+ Y P+ V E M+L G A A L P+ Q P ++ A +
Sbjct: 392 TPLPPY------PSRVWVREAMLLAGYAAAHLAVREGLPFPFATQEAPARRVEGEGLAAM 445
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
E +K + A+ P H LGLP Y Q TSP+RRY+DL+AH Q+
Sbjct: 446 WE----QRKALKRAQLKAV----PAPHKGLGLPLYAQVTSPLRRYLDLVAHQQL 491
>gi|224370379|ref|YP_002604543.1| putative ribonuclease II (RNB family protein) [Desulfobacterium
autotrophicum HRM2]
gi|223693096|gb|ACN16379.1| putative ribonuclease II (RNB family protein) [Desulfobacterium
autotrophicum HRM2]
Length = 663
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 142/297 (47%), Gaps = 24/297 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L + ID + DDA+S + DG I + IH+ D +I+ D DA R
Sbjct: 276 RCDLTNLPIITIDGQSTLDYDDAISLEKKDDGYI-IGIHIIDVAFFIKDDDPIDLDARTR 334
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+S+++P M P L+ SL++GE+ ++ V L+ I +Y + S+IK
Sbjct: 335 GSSIYMPDDKISMLPPSLSENLCSLKEGEIRPGISTLVHLNRFFEITDYQIVTSVIKVHK 394
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
+TY A LN E+E + L +AA + + RL+ G + E I + + +
Sbjct: 395 QMTYSEAN---MLNGEDEP-ITTLYKAATVLREKRLKAGGVQITLPEVNIWIEDNGE--- 447
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ------SNIDVSAF 418
I + D+ +PA L+SEMMIL +A + S + +R QP I+ S F
Sbjct: 448 -IGISRVDRENPARMLISEMMILANTLMADFLSTRKVPAVFRSQPDPKKRLFQGIETSLF 506
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + S AI+ KP H LG+ YV TSPIRRY DLL Q+
Sbjct: 507 PNCMQRKQLSRAIIGT---------KPENHSGLGVKAYVTATSPIRRYYDLLTQRQI 554
>gi|268318058|ref|YP_003291777.1| exoribonuclease II [Rhodothermus marinus DSM 4252]
gi|262335592|gb|ACY49389.1| Exoribonuclease II [Rhodothermus marinus DSM 4252]
Length = 659
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 149/295 (50%), Gaps = 10/295 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R D THL + ID E+DDA + L +G ++ IH+AD ++ P + D++A +
Sbjct: 262 DRTDFTHLPAFHIDDASTREIDDAFTVEPLAEGGWRIGIHLADVPHFVAPDDVLDREARR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LPT + PM PE+L+ + SLR + ++V V + + I + + I+
Sbjct: 322 RGLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVVTVDASEQIRDVQLVRGQIRVA 381
Query: 304 YMLTYESATELLHLNLEEE-AE-LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+ TYE+A +L E AE L++L+ + + RL +GA+ E +++V
Sbjct: 382 HGFTYETADAVLSGETPHELAEALQVLARLSQTLTEARLARGALLIRRPELKVQVDG--- 438
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAH 420
I L V D PA R+VSE MIL A + + N L + YR Q P + ++
Sbjct: 439 --DTITLKVIDPDTPARRMVSEWMILANAEAARWAAENELPMIYRVQDPPDDPELQG-RK 495
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
L PV ++ ++ +R P H LGL YVQ TSPIRRY DL Q+
Sbjct: 496 LDYDPVLLASRLRGLRRTRFST-HPQPHAGLGLEAYVQITSPIRRYADLALQRQI 549
>gi|402836909|ref|ZP_10885440.1| ribonuclease R [Mogibacterium sp. CM50]
gi|402269925|gb|EJU19194.1| ribonuclease R [Mogibacterium sp. CM50]
Length = 652
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 52/347 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D +K ID ++ + DDA+S +L++G + +H+AD +Y+ G++ D +A+ R
Sbjct: 194 RQDYRSIKTITIDGADSSDFDDAISVSKLENGNFMLLVHIADVAEYVREGTILDMEALSR 253
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+LP PM PE+L+ SL G +T S+ + DG + Y +D SII+ Y
Sbjct: 254 GNSVYLPDRVIPMLPERLSNGECSLNPGVNRLTLTASMEIDEDGHVTSYDIDESIIRSDY 313
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRL----------QWRLQQGAIDTATLETRI 354
L Y+ +++L + A ++ S+ + L + R + G+ID E++I
Sbjct: 314 RLIYDDISDILE--YRDSALVERYSDIYPMLLDALELFKVLNKRRKRDGSIDFDLPESKI 371
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ--- 410
+ ED +P I LY + A R++ E M++ + +A + + + YR +
Sbjct: 372 IL--DEDGKPTDIKLY---ERRVANRMIEEFMLVANKTVAEHYFWAKVPFVYRVHQKPDA 426
Query: 411 -----------------------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAID 441
SN+ + A A PE P+ S +++ M+ A
Sbjct: 427 LKMQELRSFLSGLGITINGKSDSIKTKELSNV-LRAIAGKPEEPLVSRVMIRTMQKANYS 485
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+ + H L Y FTSPIRRY DLL H + Q +G +
Sbjct: 486 -TECLGHYGLAFKYYCHFTSPIRRYADLLVHRAIKDQIHKGKYIGVK 531
>gi|384176988|ref|YP_005558373.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349596212|gb|AEP92399.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 779
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L+DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLEDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|398304853|ref|ZP_10508439.1| ribonuclease R [Bacillus vallismortis DV1-F-3]
Length = 779
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGDIHPRALQSVLDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|296330421|ref|ZP_06872901.1| ribonuclease R [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305675967|ref|YP_003867639.1| ribonuclease R [Bacillus subtilis subsp. spizizenii str. W23]
gi|296152424|gb|EFG93293.1| ribonuclease R [Bacillus subtilis subsp. spizizenii ATCC 6633]
gi|305414211|gb|ADM39330.1| ribonuclease R [Bacillus subtilis subsp. spizizenii str. W23]
Length = 779
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGDIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|395217105|ref|ZP_10401519.1| exoribonuclease II [Pontibacter sp. BAB1700]
gi|394455128|gb|EJF09666.1| exoribonuclease II [Pontibacter sp. BAB1700]
Length = 752
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 153/326 (46%), Gaps = 40/326 (12%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+D+ + + ID +A + DDALS +L++G ++ +H+AD T Y+ P SL +K+A
Sbjct: 292 IAKRRDMRDVTTFTIDPADAKDFDDALSIQKLENGNWEIGVHIADVTHYVHPRSLLEKEA 351
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
R TSV+L T PM PE+L+ SLR E +V + +G + + ++
Sbjct: 352 FHRATSVYLVDRTIPMLPERLSNGLCSLRPNEEKFTFSVVFEIDDNGKLYDTWYGRTVTY 411
Query: 302 PTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
YE A E + + A E+ +L+ A R + GAI T E + K+
Sbjct: 412 SDRRFAYEEAQERIETGEGDFAEEINVLNNIAKKLQAKRFKNGAISFETTEVKFKLDENG 471
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------------------TYGS----- 397
P +++YV+++ D A +L+ E M+L + +A T+GS
Sbjct: 472 KP---LSIYVKERKD-AHKLIEEFMLLANKKVAEFVYNKGKGKKRPTMVYRTHGSPDPDK 527
Query: 398 ---FNNLA--LPYRGQPQSNI--DVSAFAHLPEGPVRSSAI----VKIMRAAAIDFRKPV 446
F+ A Y+ P +I +++ H EG S + ++ M A A +P
Sbjct: 528 LNTFSVFARKFGYKVDPDGDISEELNNLTHEIEGKPEQSVLQNLAIRTM-AKAKYSTEPE 586
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++AH
Sbjct: 587 GHFGLAFDHYSHFTSPIRRYPDMMAH 612
>gi|386759980|ref|YP_006233197.1| ribonuclease R [Bacillus sp. JS]
gi|384933263|gb|AFI29941.1| ribonuclease R [Bacillus sp. JS]
Length = 779
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|256422681|ref|YP_003123334.1| ribonuclease R [Chitinophaga pinensis DSM 2588]
gi|256037589|gb|ACU61133.1| ribonuclease R [Chitinophaga pinensis DSM 2588]
Length = 705
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 155/328 (47%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD + ID +A + DDA+S +L+ +V +H+AD + Y++P + DK+A KR
Sbjct: 193 RKDFRKTLTFTIDPVDAKDFDDAISIRKLRGNWYEVGVHIADVSHYVQPDTALDKEADKR 252
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
TSV+LP PM PEK++ E SLR E + +T S V ++ G I E + ++I
Sbjct: 253 ATSVYLPDRVLPMLPEKISNELCSLRPHE--DKLTFSAVFKMNDKGEIKENWIGRTVIHS 310
Query: 303 TYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+ TYE E++ + E+ +L++ + + R + GAI+ ++ E R ++ E+
Sbjct: 311 DHRFTYEQVQEVIETGEGPYKDEVLLLNKISQTLRKVRFENGAINFSSQEVRFQL--DEN 368
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYRGQPQSNID- 414
+PI V ++ A +L+ E+M+L +A Y G+ ++ PYR + +
Sbjct: 369 AKPI--GIVIKESKEAHQLIEELMLLANRTVAEYVYNIRIGTNQHVPFPYRVHDTPDEEK 426
Query: 415 ---VSAFAH---------------------------LPEGPVRSSAIVKIMRAAAIDFRK 444
SAFA PE V + ++ M AA
Sbjct: 427 LKMFSAFARKFGHKLEVDNLEKLARSFNEMLQLAHGKPEQHVLETLGIRTMAKAAYT-TD 485
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D+L H
Sbjct: 486 DIGHYGLGFEHYCHFTSPIRRYPDVLVH 513
>gi|51245540|ref|YP_065424.1| ribonuclease R [Desulfotalea psychrophila LSv54]
gi|50876577|emb|CAG36417.1| related to ribonuclease R [Desulfotalea psychrophila LSv54]
Length = 590
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 150/327 (45%), Gaps = 61/327 (18%)
Query: 175 LQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKY 230
LQ D L + R D THLK ID + DDAL+ + DG V +H++D Y
Sbjct: 190 LQTDMDKLFDDPARIDYTHLKPITIDGPTTQDFDDALTIEK--DGENYLVGVHISDVAHY 247
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PG ++AM+RGTS++ P PM P L+ SL QGE+ A++ ++L + +
Sbjct: 248 VRPGDPLFQEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEIRAALSFMILLSPEAEV 307
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ SIIK LTYE A + L+++ E+K+L++ + RL+Q ID L
Sbjct: 308 LRVRIRPSIIKVARRLTYEEADSM----LKDDNEIKMLNKVSQ-----RLRQRRIDNGAL 358
Query: 351 ETRIKVANPEDPEPIINLYVEDQAD----------PAMRLVSEMMILCGEAIATYGSFNN 400
P P +N+++++Q PA LVSEMMIL A Y +
Sbjct: 359 LL---------PFPDVNIFIDNQGKVHVQLAKSNTPARVLVSEMMILANSESARYVADRM 409
Query: 401 LALPYRGQPQ------SNIDVSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ YR QP+ D F + LP G + S + K H
Sbjct: 410 VPGIYRSQPELKNRIVHGTDDDLFQNTKQRKQLPRGEL--STVAK-------------SH 454
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAHYQV 475
LG+ Y TSPIRR +DL+ +Q+
Sbjct: 455 SGLGVSQYTTITSPIRRLLDLVMQHQL 481
>gi|350267578|ref|YP_004878885.1| ribonuclease R [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600465|gb|AEP88253.1| ribonuclease R [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 779
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLIPMFKDMERLAQILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGDIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|16080414|ref|NP_391241.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|221311311|ref|ZP_03593158.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|221315638|ref|ZP_03597443.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221320554|ref|ZP_03601848.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. JH642]
gi|221324838|ref|ZP_03606132.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SMY]
gi|321312911|ref|YP_004205198.1| ribonuclease R [Bacillus subtilis BSn5]
gi|402777525|ref|YP_006631469.1| ribonuclease R [Bacillus subtilis QB928]
gi|418031422|ref|ZP_12669907.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SC-8]
gi|428280936|ref|YP_005562671.1| ribonuclease R [Bacillus subtilis subsp. natto BEST195]
gi|430758072|ref|YP_007208135.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449095810|ref|YP_007428301.1| ribonuclease R [Bacillus subtilis XF-1]
gi|452913805|ref|ZP_21962433.1| ribonuclease R [Bacillus subtilis MB73/2]
gi|7674332|sp|O32231.1|RNR_BACSU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|2635874|emb|CAB15366.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. 168]
gi|291485893|dbj|BAI86968.1| ribonuclease R [Bacillus subtilis subsp. natto BEST195]
gi|320019185|gb|ADV94171.1| ribonuclease R [Bacillus subtilis BSn5]
gi|351472481|gb|EHA32594.1| ribonuclease R [Bacillus subtilis subsp. subtilis str. SC-8]
gi|402482704|gb|AFQ59213.1| Ribonuclease R [Bacillus subtilis QB928]
gi|407962199|dbj|BAM55439.1| ribonuclease R [Bacillus subtilis BEST7613]
gi|407966213|dbj|BAM59452.1| ribonuclease R [Bacillus subtilis BEST7003]
gi|430022592|gb|AGA23198.1| Ribonuclease R [Bacillus subtilis subsp. subtilis str. BSP1]
gi|449029725|gb|AGE64964.1| ribonuclease R [Bacillus subtilis XF-1]
gi|452118833|gb|EME09227.1| ribonuclease R [Bacillus subtilis MB73/2]
Length = 779
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|295398254|ref|ZP_06808299.1| ribonuclease R [Aerococcus viridans ATCC 11563]
gi|294973513|gb|EFG49295.1| ribonuclease R [Aerococcus viridans ATCC 11563]
Length = 838
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 52/338 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ D+L RKD L ID +A +LDDA+S +L +G ++ +H+AD + Y+ S
Sbjct: 254 SNDDLKGRKDHRDLLTITIDGADAKDLDDAISLSKLPNGNYQLGVHIADVSYYVTEDSAM 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P++L+ SL + +T++ ++ D G I +Y +
Sbjct: 314 DKEAYERGTSVYLTDRVVPMLPQRLSNGICSLHPN--VDRLTMTAIMEIDHNGGIVDYDI 371
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----LKILSEAAALR---LQWRLQQGAIDT 347
SII Y +TY ++ N E E +L A L R+ +GAID
Sbjct: 372 HPSIIHSDYRMTYSDVNAIITDNDSELREKYSEITDMLENMATLHEILYNKRVSRGAIDF 431
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--Y 405
+ E +I V P I V ++ R++ M+ E +A G F LP Y
Sbjct: 432 DSSEAKIIVDGEGHPTAI---EVRERG-VGERMIESFMLSANETVA--GHFTRKVLPFIY 485
Query: 406 RGQPQSNID--------VSAFAHLPEG-----------------------PVRSSAIVKI 434
R Q + D V+AF +P+G PV S +++
Sbjct: 486 RVHEQPDEDRMQRFLEFVTAFGIVPQGTKSSIRPKDIQNVLREVEGETFQPVVSMMLLRS 545
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A D +P+ H L Y FTSPIRRY DL+ H
Sbjct: 546 MKQAKYDI-EPIGHYGLAAEDYTHFTSPIRRYPDLIVH 582
>gi|443630765|ref|ZP_21114946.1| ribonuclease R [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443348570|gb|ELS62626.1| ribonuclease R [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 779
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHQIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAEILRDKRMNRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|20807463|ref|NP_622634.1| exoribonuclease [Thermoanaerobacter tengcongensis MB4]
gi|20515989|gb|AAM24238.1| Exoribonucleases [Thermoanaerobacter tengcongensis MB4]
Length = 708
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 154/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT LK ID ++A +LDDA+ RL +G +Y+ +AD + Y++ G+ DK+A++R
Sbjct: 244 RVDLTKLKFVTIDGEDAKDLDDAVYVERLPNGNYLLYVSIADVSHYVKEGTNLDKEALRR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL GE ++TV + +++ G I ++ + SII+
Sbjct: 304 GCSVYFLDRVIPMLPPKLSNGICSLNPGEERLSLTVKMEINTRGEIVDHDIFESIIESKE 363
Query: 305 MLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY S ++L N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTSVYKILEENDEELIKRYSHLVEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A +++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGRPVDIVKV----ERNIAHKIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMRAAAIDFRKPV------------------ 446
+ F H + G + A+ ++R + V
Sbjct: 480 LAFNKFIHNLGYHIKGVEGGEIHPKALQDLIRQVRGKSEQKVVETLLLRSLKRARYSPED 539
Query: 447 -RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALAAKYYTHFTSPIRRYPDLVIH 566
>gi|325294704|ref|YP_004281218.1| ribonuclease R [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065152|gb|ADY73159.1| ribonuclease R [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 704
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 152/336 (45%), Gaps = 41/336 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E++L R DL + ID + A + DDA++ +L DG K+Y+H+AD + Y++PGS D
Sbjct: 235 EEDLKGRVDLREQLCFTIDGENARDFDDAVAIEKLSDGNYKLYVHIADVSHYVKPGSALD 294
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A KRGTSV+ P PM PEKL+ SL T +V++ G + +Y + S
Sbjct: 295 REAYKRGTSVYFPDRCIPMLPEKLSNGICSLNPNVDRLTFTCEMVINKKGIVVDYKIYES 354
Query: 299 IIKPTYMLTYESATELLHLNLEE-------EAELKILSEAAALRLQWRLQQGAIDTATLE 351
+I LTY A +++ + E LK + E A + + R ++G++D E
Sbjct: 355 VIHSKARLTYTIAQKIIDGDKEAIDKFPHVVESLKTMYELAQILYKKRYKRGSLDFDLPE 414
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG---- 407
+ ++ +P I++Y ++ A R++ E MI E +A Y + + YR
Sbjct: 415 PVVVLSTEGEP---IDIYRAERL-WAHRIIEEFMIAANETVAEYMFWTDYPSVYRIHESP 470
Query: 408 -----QPQSNIDVSAFAHLP------------------EGPVRSSAIVKIM-RAAAIDFR 443
Q N S +P EG + +M R A
Sbjct: 471 DREKLQEFLNFVRSLGIRVPSVKNDIQPKMLQKILEEVEGKSEEKLVNYLMLRTMARAKY 530
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVGL 477
P G GL Y FTSPIRRY DL H QV +
Sbjct: 531 SPDNVGHFGLASTYYTHFTSPIRRYADLQLHRQVKM 566
>gi|301336862|ref|ZP_07225064.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum MopnTet14]
Length = 692
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ L IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P + VE++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVAL----VENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 R-GQPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + ++ F A P P+ S V+ M
Sbjct: 423 RIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|374373387|ref|ZP_09631047.1| ribonuclease R [Niabella soli DSM 19437]
gi|373234360|gb|EHP54153.1| ribonuclease R [Niabella soli DSM 19437]
Length = 664
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 158/335 (47%), Gaps = 48/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+D+L RKD+ + + ID ++A + DDA+S L++G +V +H+AD + Y+ PG+
Sbjct: 187 TKDDLAKRKDVRGILTFTIDPEDAKDFDDAISFRVLKNGNYEVGVHIADVSHYVTPGTAL 246
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSV 295
D +A +R TSV+LP PM PE ++ SLR E + +T S + L+ + +Y +
Sbjct: 247 DDEAYQRATSVYLPDRVNPMLPEHISNVLCSLRPNE--DKLTFSAIFQLNDKAEVKQYWL 304
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRI 354
++I TYE A +++ + A + + RL Q R +GAI+ + E R
Sbjct: 305 GKTVIHSNRRYTYEDAQQIIETGAGDNAAALLTVHKLSQRLRQNRFDEGAINFNSTEVRF 364
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGS---FNN--LALPYRGQ 408
K+ E+ P+ I L V +A+ +L+ E+M+L + +A S NN L PYR
Sbjct: 365 KL--DENGVPVGITLKVSKEAN---QLIEELMLLANKYVAESASKVKINNKTLPFPYRIH 419
Query: 409 PQSN-----------------IDVS-------AFAHL-------PEGPVRSSAIVKIMRA 437
+ D+S +F L PE V ++ M A
Sbjct: 420 DTPDEEKLLPFVAFTNKFGYKFDISSAESIAASFDKLLKDIKGRPEEAVLQQLGIRTM-A 478
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H LG Y FTSPIRRY D++ H
Sbjct: 479 KAKYTSSNIGHYGLGFENYCHFTSPIRRYPDIMVH 513
>gi|15835291|ref|NP_297050.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
gi|270285465|ref|ZP_06194859.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Nigg]
gi|270289476|ref|ZP_06195778.1| VacB/Rnb family exoribonuclease [Chlamydia muridarum Weiss]
gi|14195179|sp|Q9PK00.1|RNR_CHLMU RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|8163286|gb|AAF73588.1| exoribonuclease, VacB/Rnb family [Chlamydia muridarum Nigg]
Length = 692
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ L IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P + VE++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVAL----VENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 R-GQPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + ++ F A P P+ S V+ M
Sbjct: 423 RIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|342731884|ref|YP_004770723.1| exoribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Japan]
gi|342329339|dbj|BAK55981.1| exoribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Japan]
Length = 692
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 42/365 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
++ ED L +R+DL L + ID +A +LDDA+ R + I + +H+AD + Y+
Sbjct: 228 MEVIEDELSSRRDLRDLPIVTIDGSDAKDLDDAVYVKRQGEEYI-LSVHIADVSHYVRYR 286
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A+KRGTSV+L PM P++L+ + SL G ++ +V++ G + Y
Sbjct: 287 SELDKEALKRGTSVYLIDKVVPMLPKELSNDLCSLNSGTDKLTLSCEMVINKSGEVTRYD 346
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATL 350
+ S+I+ Y LTY++ +++ N E +++ + + A + R ++GAI+
Sbjct: 347 IFESVIRTKYRLTYDNVQDIIDDNTNEFSDIYEMIFNMKDLAEILNSRRERRGAINFDFP 406
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +I + D I + ++ E M+LC E IA + F N PYR +
Sbjct: 407 ECKISLNEDGDVLDISAF----MRKFSHNIIEEFMLLCNETIAEHMFFLNYPFPYRIHEE 462
Query: 411 -------------SNIDVS-----------------AFAHLPEGPVRSSAIVKIMRAAAI 440
N+D + F E S I++ M A
Sbjct: 463 PDMEKIMNLRDILHNLDYNFRINDKVYSNQIQKVLMHFKGKDEEMFLSKFILRSMSKARY 522
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH--YQVGLQAAAWVSVGAQIGDEVEVKVE 498
+ + H L Y FTSPIRRY DL+AH ++ L+ + + +EV + E
Sbjct: 523 -LKDCIGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKGGIGERLFKNLSEEVSICCE 581
Query: 499 EAHPR 503
+ R
Sbjct: 582 NSSLR 586
>gi|384455308|ref|YP_005667901.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959002|ref|ZP_12601877.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-1]
gi|417964521|ref|ZP_12606235.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-4]
gi|417968503|ref|ZP_12609514.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-co]
gi|418372131|ref|ZP_12964226.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|346983649|dbj|BAK79325.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380334398|gb|EIA24815.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-1]
gi|380339518|gb|EIA28245.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-co]
gi|380341111|gb|EIA29616.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-4]
gi|380342737|gb|EIA31170.1| Ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-SU]
Length = 692
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 42/365 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
++ ED L +R+DL L + ID +A +LDDA+ R + I + +H+AD + Y+
Sbjct: 228 MEVIEDELSSRRDLRDLPIVTIDGSDAKDLDDAVYVKRQGEEYI-LSVHIADVSHYVRYR 286
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A+KRGTSV+L PM P++L+ + SL G ++ +V++ G + Y
Sbjct: 287 SELDKEALKRGTSVYLIDKVVPMLPKELSNDLCSLNSGTDKLTLSCEMVINKSGEVTRYD 346
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATL 350
+ S+I+ Y LTY++ +++ N E +++ + + A + R ++GAI+
Sbjct: 347 IFESVIRTKYRLTYDNVQDIIDDNTNEFSDIYEMIFNMKDLAEILNSRRERRGAINFDFP 406
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +I + D I + ++ E M+LC E IA + F N PYR +
Sbjct: 407 ECKISLNEDGDVLDISAF----MRKFSHNIIEEFMLLCNETIAEHMFFLNYPFPYRIHEE 462
Query: 411 -------------SNIDVS-----------------AFAHLPEGPVRSSAIVKIMRAAAI 440
N+D + F E S I++ M A
Sbjct: 463 PDMEKIMNLRDILHNLDYNFRINDKVYSNQIQKVLMHFKGKDEEMFLSKFILRSMSKARY 522
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH--YQVGLQAAAWVSVGAQIGDEVEVKVE 498
+ + H L Y FTSPIRRY DL+AH ++ L+ + + +EV + E
Sbjct: 523 -LKDCIGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKGGIGERLFKNLSEEVSICCE 581
Query: 499 EAHPR 503
+ R
Sbjct: 582 NSSLR 586
>gi|225848501|ref|YP_002728664.1| ribonuclease R [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644714|gb|ACN99764.1| ribonuclease R [Sulfurihydrogenibium azorense Az-Fu1]
Length = 701
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 154/327 (47%), Gaps = 44/327 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT + ID + A + DDA+ A+ + ++Y+H+AD + Y++ GS D++A +
Sbjct: 241 NRKDLTKQICFTIDPESARDHDDAV-AIEKEGENYRLYVHIADVSYYVKEGSAIDREAFQ 299
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA SLR E A T ++++ G + +Y + S+I+
Sbjct: 300 RGNTYYLPERALHMLPERLASNLCSLRPFERKYAFTCEMLINKKGEVIDYKIYESVIESK 359
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY+ A ++ L E + LK + E A + ++ + ++G+ID E++I
Sbjct: 360 AKLTYDQALAII-LGEPEHVKAFPDLVEPLKHMEELAKILMKAKEERGSIDFDMPESQIL 418
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
DP ++ + A R++ E MI+ E +A + NL YR + I+
Sbjct: 419 FDEKGDPYDVVPY----ERHLAHRIIEEFMIIANETVARHMEKLNLPFIYRVHEKPKIEK 474
Query: 415 VSAFAHL----------PEGPVRSSAIVKIMRAAA-------IDF----------RKPVR 447
V+AF + P+G V I K++ A + F P
Sbjct: 475 VNAFVDIMAGLGYKVEYPKGEVEPKFIQKLIEMAVGTPEESLVRFLALRTMKQAKYSPYN 534
Query: 448 HGVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY D+ H
Sbjct: 535 IGHFGLASECYTHFTSPIRRYADVWVH 561
>gi|418016724|ref|ZP_12656288.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-NYU]
gi|345505697|gb|EGX27992.1| ribonuclease R [Candidatus Arthromitus sp. SFB-mouse-NYU]
Length = 696
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 42/365 (11%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
++ ED L +R+DL L + ID +A +LDDA+ R + I + +H+AD + Y+
Sbjct: 232 MEVIEDELSSRRDLRDLPIVTIDGSDAKDLDDAVYVKRQGEEYI-LSVHIADVSHYVRYR 290
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A+KRGTSV+L PM P++L+ + SL G ++ +V++ G + Y
Sbjct: 291 SELDKEALKRGTSVYLIDKVVPMLPKELSNDLCSLNSGTDKLTLSCEMVINKSGEVTRYD 350
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELK----ILSEAAALRLQWRLQQGAIDTATL 350
+ S+I+ Y LTY++ +++ N E +++ + + A + R ++GAI+
Sbjct: 351 IFESVIRTKYRLTYDNVQDIIDDNTNEFSDIYEMIFNMKDLAEILNSRRERRGAINFDFP 410
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E +I + D I + ++ E M+LC E IA + F N PYR +
Sbjct: 411 ECKISLNEDGDVLDISAF----MRKFSHNIIEEFMLLCNETIAEHMFFLNYPFPYRIHEE 466
Query: 411 -------------SNIDVS-----------------AFAHLPEGPVRSSAIVKIMRAAAI 440
N+D + F E S I++ M A
Sbjct: 467 PDMEKIMNLRDILHNLDYNFRINDKVYSNQIQKVLMHFKGKDEEMFLSKFILRSMSKARY 526
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH--YQVGLQAAAWVSVGAQIGDEVEVKVE 498
+ + H L Y FTSPIRRY DL+AH ++ L+ + + +EV + E
Sbjct: 527 -LKDCIGHFGLSTKYYCHFTSPIRRYPDLVAHRIIKLSLKGGIGERLFKNLSEEVSICCE 585
Query: 499 EAHPR 503
+ R
Sbjct: 586 NSSLR 590
>gi|194336956|ref|YP_002018750.1| ribonuclease R [Pelodictyon phaeoclathratiforme BU-1]
gi|194309433|gb|ACF44133.1| ribonuclease R [Pelodictyon phaeoclathratiforme BU-1]
Length = 770
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 48/338 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L R D+ V+ ID +A + DDALS L+DG+ K+ +H+AD + Y+ S
Sbjct: 294 TDEDLKGRLDIRDKVVFTIDPVDAKDFDDALSIEMLEDGQYKIGVHIADVSHYVPENSPL 353
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KR TSV+L PM P +L+ + SL G A +V + L +DG + ++ +
Sbjct: 354 DREALKRATSVYLVDRVIPMLPARLSEQICSLNPGVDRMAFSVFLTLSADGEVRKHEFNK 413
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I YE E+L + EL+ L + L + R + G +D T E R K+
Sbjct: 414 TVIHSKRRFAYEDVEEILKQGKGDFVDELQALDRLSVLLREKRFKHGGLDFETEEVRFKL 473
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFN-NLALP----YR--G 407
+ +P ++ + + + RL+ E M+L +A Y +F N P YR G
Sbjct: 474 GSKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAKYLTKTFKENKKEPQPVIYRVHG 529
Query: 408 QPQSNIDVSAFAHL-------------PEGPVRSSA----IVKIMRAAAIDF-------- 442
PQ V A+ EGP+ S++ +++ ++ + I+F
Sbjct: 530 APQQE-KVLILANFVKRLGFDLKLNRGKEGPIVSASALRQLLQQVKGSNIEFLVSELVLR 588
Query: 443 --------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H LG Y FTSPIRRY DL+ H
Sbjct: 589 CMSKAVYTGDNVGHYGLGFEHYTHFTSPIRRYPDLIVH 626
>gi|374295591|ref|YP_005045782.1| RNAse R [Clostridium clariflavum DSM 19732]
gi|359825085|gb|AEV67858.1| RNAse R [Clostridium clariflavum DSM 19732]
Length = 786
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 164/336 (48%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+DL L++ ID ++A +LDDA+S RL +G K+ +H+AD + Y+ GS
Sbjct: 243 TEEMIKGRRDLRDLRMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVSYYVTEGSPL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KRGTSV+L PM P++L+ SL + TV + + S+G + ++ +
Sbjct: 303 DKEALKRGTSVYLVDRVIPMLPKELSNGICSLNPQVDRLSFTVMMEIDSNGKVVDHEIFE 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+I+ +TY T++ + +E++ EL K + E A + R+Q+G+ID
Sbjct: 363 SVIRTNERMTY---TDVYKILVEKDKELSKRYDYLVEDFKTMEELALILRNKRMQRGSID 419
Query: 347 TATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I + E+ +PI I Y + A +++ E M++C E +A + + N+ Y
Sbjct: 420 FDFDEAKILL--DENGKPIDIKRY---EITIANKIIEEFMLVCNETVAEHFFWANVPFVY 474
Query: 406 RGQPQSNID----VSAFAH------------LPEG------PVRSSAIVKIMRAAAIDFR 443
R + D S F H P ++ + +I+ +
Sbjct: 475 RVHEDPDTDKIESFSEFVHNLGYTLKGINKIHPRALQDLLEKIKGTKEERIISTVMLRSL 534
Query: 444 KPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
+ R+ G GL Y FTSPIRRY DL+ H
Sbjct: 535 QKARYSHLSVGHFGLAARYYCHFTSPIRRYPDLIIH 570
>gi|325954642|ref|YP_004238302.1| ribonuclease R [Weeksella virosa DSM 16922]
gi|323437260|gb|ADX67724.1| ribonuclease R [Weeksella virosa DSM 16922]
Length = 731
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 150/331 (45%), Gaps = 42/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS L++G ++ +H+AD T Y++PG+L D
Sbjct: 271 ENEVKKRRDMRDILTFTIDPKDAKDFDDALSIQPLENGNWEIGVHIADVTHYVQPGTLID 330
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A KR TSV+L PM PE L+ SLR E + L ++G + + +
Sbjct: 331 QEAYKRATSVYLVDRVVPMLPEILSNNVCSLRPNEDKYTFSGVFELTNEGDVVKSWFGRT 390
Query: 299 IIKPTYMLTYESATELLHLNLEE-EAELKILSE-AAALRLQWRLQQGAIDTATLETRIKV 356
I + +YE A EL+ + + E++ L A LR Q R+++GAI+ +E + ++
Sbjct: 391 AIHSNHRFSYEEAQELIEGKTGDYQEEIRTLDRLAKKLRAQ-RMKEGAINFDKIEVKFQL 449
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQPQS 411
+P + +D + L+ E M+LC ++ + G N YR +
Sbjct: 450 DQDNNPTGVFFKISKD----SNHLIEEFMLLCNRKVSEFVSLEKGKENGRTYIYRIHDEP 505
Query: 412 NID--------VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP------------------ 445
+ D V F + E R I + R A KP
Sbjct: 506 DPDKLLDLKKFVIQFGYELEIGERKKTIRSMNRLLADVKGKPEENMIETLAMRSMSKAKY 565
Query: 446 ----VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY D++AH
Sbjct: 566 STENIGHYGLAFDYYTHFTSPIRRYPDMIAH 596
>gi|166154608|ref|YP_001654726.1| exoribonuclease II [Chlamydia trachomatis 434/Bu]
gi|166155483|ref|YP_001653738.1| exoribonuclease II [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335875|ref|ZP_07224119.1| exoribonuclease II [Chlamydia trachomatis L2tet1]
gi|339626071|ref|YP_004717550.1| ribonuclease R [Chlamydia trachomatis L2c]
gi|165930596|emb|CAP04093.1| exoribonuclease II [Chlamydia trachomatis 434/Bu]
gi|165931471|emb|CAP07047.1| exoribonuclease II [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|339461079|gb|AEJ77582.1| ribonuclease R [Chlamydia trachomatis L2c]
gi|440526203|emb|CCP51687.1| exoribonuclease R [Chlamydia trachomatis L2b/8200/07]
gi|440536028|emb|CCP61541.1| exoribonuclease R [Chlamydia trachomatis L2b/795]
gi|440536920|emb|CCP62434.1| exoribonuclease R [Chlamydia trachomatis L1/440/LN]
gi|440537810|emb|CCP63324.1| exoribonuclease R [Chlamydia trachomatis L1/1322/p2]
gi|440538700|emb|CCP64214.1| exoribonuclease R [Chlamydia trachomatis L1/115]
gi|440539589|emb|CCP65103.1| exoribonuclease R [Chlamydia trachomatis L1/224]
gi|440540480|emb|CCP65994.1| exoribonuclease R [Chlamydia trachomatis L2/25667R]
gi|440541369|emb|CCP66883.1| exoribonuclease R [Chlamydia trachomatis L3/404/LN]
gi|440542256|emb|CCP67770.1| exoribonuclease R [Chlamydia trachomatis L2b/UCH-2]
gi|440543147|emb|CCP68661.1| exoribonuclease R [Chlamydia trachomatis L2b/Canada2]
gi|440544038|emb|CCP69552.1| exoribonuclease R [Chlamydia trachomatis L2b/LST]
gi|440544928|emb|CCP70442.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams1]
gi|440545818|emb|CCP71332.1| exoribonuclease R [Chlamydia trachomatis L2b/CV204]
gi|440914080|emb|CCP90497.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams2]
gi|440914970|emb|CCP91387.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams3]
gi|440915862|emb|CCP92279.1| exoribonuclease R [Chlamydia trachomatis L2b/Canada1]
gi|440916756|emb|CCP93173.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams4]
gi|440917646|emb|CCP94063.1| exoribonuclease R [Chlamydia trachomatis L2b/Ams5]
Length = 694
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|389858966|ref|YP_006361207.1| exoribonuclease II [Chlamydia trachomatis E/SW3]
gi|380250915|emb|CCE12676.1| exoribonuclease II [Chlamydia trachomatis E/SW3]
Length = 694
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|452856992|ref|YP_007498675.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452081252|emb|CCP23019.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 777
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|255348762|ref|ZP_05380769.1| exoribonuclease II [Chlamydia trachomatis 70]
gi|255503302|ref|ZP_05381692.1| exoribonuclease II [Chlamydia trachomatis 70s]
gi|385241768|ref|YP_005809608.1| exoribonuclease II [Chlamydia trachomatis E/11023]
gi|385245375|ref|YP_005814198.1| exoribonuclease II [Chlamydia trachomatis E/150]
gi|386262751|ref|YP_005816030.1| exoribonuclease II [Chlamydia trachomatis Sweden2]
gi|289525439|emb|CBJ14916.1| exoribonuclease II [Chlamydia trachomatis Sweden2]
gi|296434991|gb|ADH17169.1| exoribonuclease II [Chlamydia trachomatis E/150]
gi|296438711|gb|ADH20864.1| exoribonuclease II [Chlamydia trachomatis E/11023]
gi|440529775|emb|CCP55259.1| exoribonuclease R [Chlamydia trachomatis E/SotonE4]
gi|440530674|emb|CCP56158.1| exoribonuclease R [Chlamydia trachomatis E/SotonE8]
gi|440535142|emb|CCP60652.1| exoribonuclease R [Chlamydia trachomatis E/Bour]
Length = 694
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|76789128|ref|YP_328214.1| exoribonuclease II [Chlamydia trachomatis A/HAR-13]
gi|76167658|gb|AAX50666.1| exoribonuclease II [Chlamydia trachomatis A/HAR-13]
Length = 694
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|237802822|ref|YP_002888016.1| exoribonuclease II [Chlamydia trachomatis B/Jali20/OT]
gi|237804744|ref|YP_002888898.1| exoribonuclease II [Chlamydia trachomatis B/TZ1A828/OT]
gi|376282403|ref|YP_005156229.1| exoribonuclease II [Chlamydia trachomatis A2497]
gi|385270088|ref|YP_005813248.1| exoribonuclease II [Chlamydia trachomatis A2497]
gi|231273044|emb|CAX09957.1| exoribonuclease II [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274056|emb|CAX10850.1| exoribonuclease II [Chlamydia trachomatis B/Jali20/OT]
gi|347975228|gb|AEP35249.1| Exoribonuclease II [Chlamydia trachomatis A2497]
gi|371908433|emb|CAX09063.1| exoribonuclease II [Chlamydia trachomatis A2497]
gi|438690327|emb|CCP49584.1| exoribonuclease R [Chlamydia trachomatis A/7249]
gi|438691411|emb|CCP48685.1| exoribonuclease R [Chlamydia trachomatis A/5291]
gi|438692784|emb|CCP47786.1| exoribonuclease R [Chlamydia trachomatis A/363]
Length = 694
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|219112029|ref|XP_002177766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410651|gb|EEC50580.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 813
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 172/372 (46%), Gaps = 78/372 (20%)
Query: 175 LQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSA--MRLQDG--RIKVYIHVADPTK 229
+Q+ D+LL R+DL LKVY ID + E+DD LS +R DG R ++IH+AD +
Sbjct: 294 VQRDPDSLLGIRRDLRDLKVYTIDGESTTEIDDGLSIEIIRQPDGTERQAIWIHIADADR 353
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
+ S A R TS++LP + PMFP +++ MSL G+ A+++ V+L+ DGS
Sbjct: 354 WAPRNSTLFHAARTRYTSLYLPRGSCPMFPPQVSDNVMSLIAGQDACALSLRVMLNEDGS 413
Query: 290 IAEYS--VDNSIIKPTYMLTYESATELL--HLNLEEEAELKILSEAAALRLQWRLQQ--- 342
I + V S+I Y LTY E+L + EE EL L A R R++
Sbjct: 414 IDASTLIVTPSLIHVDYRLTYNDVDEMLAEGIGYREEWELGALLGIANARRDCRIRNGSS 473
Query: 343 -------------------GAIDTATLETRIKVANPEDPEPIINLYVEDQAD-------- 375
GA D +E I+V++ N ED D
Sbjct: 474 EGWIPNPIPYATISTKNDVGATDGVAIELEIQVSHNAGK----NYSAEDALDESKSPINV 529
Query: 376 ----PAMRLVSEMMILCGEAI---------------ATYGSFNN-LALPYRGQPQSN--- 412
A +V+E MIL GE++ ++G+F N L LP+R QP+ +
Sbjct: 530 LPVSAAYLMVTEAMILAGESLGRWQSRLEEEEKSINGSHGAFQNYLRLPFRTQPKPDWAS 589
Query: 413 --------IDVSAFAHLPEGPVRSSAIVKIMRAAAI-DFRKPVRHGVLGLPGYVQFTSPI 463
+D+ + ++ G + + +++ + + R P H LGL Y+Q+TSPI
Sbjct: 590 RAREKKIMMDLLEY-NIGNGLCHAWYARRFLQSVRVTETRLP--HFGLGLDSYIQWTSPI 646
Query: 464 RRYMDLLAHYQV 475
RR+ DL AH V
Sbjct: 647 RRFSDLQAHSAV 658
>gi|424843137|ref|ZP_18267762.1| ribonuclease R [Saprospira grandis DSM 2844]
gi|395321335|gb|EJF54256.1| ribonuclease R [Saprospira grandis DSM 2844]
Length = 986
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 152/337 (45%), Gaps = 45/337 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E + R DL + + ID A + DDALS L +G ++ IH+AD T Y+ G
Sbjct: 281 LEIPEAEIQKRLDLRQIPTFTIDPATAKDFDDALSVEMLDNGNYRIGIHIADVTYYVAKG 340
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A KR TSV+L PM PEKL+ SLR E + L++ G + E
Sbjct: 341 SPLDKEAAKRTTSVYLVDRVLPMLPEKLSNGVCSLRPHEDKLTFSALFELNAKGHVVEEW 400
Query: 295 VDNSIIKPTYMLTYESATELLH-LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
++I YE A E+L EL+IL+ A + + R ++GAI + E R
Sbjct: 401 FGKTVIHSDQRFAYEEAQEILDGAEGPYSQELRILNRYAHILRKARFKKGAISFESPEVR 460
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG------------------------ 389
K+ ED +P +++Y++ + D M LV + M+L
Sbjct: 461 FKL--DEDGKP-VDVYLKHRKDAHM-LVEDFMLLANRRVGAKIMNIYRNGGKEVPFVYRI 516
Query: 390 ------EAIATYGSFNNLALPYRGQPQSNIDVS-AFAHL-------PEGPVRSSAIVKIM 435
E + +G F L YR + Q +V+ AF + PE V ++ M
Sbjct: 517 HDLPDMEKVNGFGKF-AAQLGYRLKIQDVEEVAGAFNKMLKAAEGKPEHAVLHQLGIRTM 575
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AA + + H LG Y FTSPIRRY D+L H
Sbjct: 576 SKAAYSTQN-IGHYGLGFEDYSHFTSPIRRYADVLVH 611
>gi|255311203|ref|ZP_05353773.1| exoribonuclease II [Chlamydia trachomatis 6276]
gi|255317504|ref|ZP_05358750.1| exoribonuclease II [Chlamydia trachomatis 6276s]
gi|385239913|ref|YP_005807755.1| exoribonuclease II [Chlamydia trachomatis G/9768]
gi|385242690|ref|YP_005810529.1| exoribonuclease II [Chlamydia trachomatis G/9301]
gi|385246299|ref|YP_005815121.1| exoribonuclease II [Chlamydia trachomatis G/11074]
gi|296435918|gb|ADH18092.1| exoribonuclease II [Chlamydia trachomatis G/9768]
gi|296437778|gb|ADH19939.1| exoribonuclease II [Chlamydia trachomatis G/11074]
gi|297140278|gb|ADH97036.1| exoribonuclease II [Chlamydia trachomatis G/9301]
gi|440533350|emb|CCP58860.1| exoribonuclease R [Chlamydia trachomatis Ia/SotonIa1]
gi|440534244|emb|CCP59754.1| exoribonuclease R [Chlamydia trachomatis Ia/SotonIa3]
Length = 694
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|15605122|ref|NP_219907.1| exoribonuclease II [Chlamydia trachomatis D/UW-3/CX]
gi|385240836|ref|YP_005808677.1| exoribonuclease II [Chlamydia trachomatis G/11222]
gi|385243604|ref|YP_005811450.1| exoribonuclease II [Chlamydia trachomatis D-EC]
gi|385244484|ref|YP_005812328.1| exoribonuclease II [Chlamydia trachomatis D-LC]
gi|7674334|sp|O84402.1|RNR_CHLTR RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|3328824|gb|AAC67994.1| Ribonuclease Family [Chlamydia trachomatis D/UW-3/CX]
gi|296436844|gb|ADH19014.1| exoribonuclease II [Chlamydia trachomatis G/11222]
gi|297748527|gb|ADI51073.1| Exoribonuclease II [Chlamydia trachomatis D-EC]
gi|297749407|gb|ADI52085.1| Exoribonuclease II [Chlamydia trachomatis D-LC]
gi|440527992|emb|CCP53476.1| exoribonuclease R [Chlamydia trachomatis D/SotonD5]
gi|440528883|emb|CCP54367.1| exoribonuclease R [Chlamydia trachomatis D/SotonD6]
gi|440532457|emb|CCP57967.1| exoribonuclease R [Chlamydia trachomatis G/SotonG1]
Length = 694
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|429506660|ref|YP_007187844.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488250|gb|AFZ92174.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 777
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PHSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|440525316|emb|CCP50567.1| exoribonuclease R [Chlamydia trachomatis K/SotonK1]
Length = 694
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|345304350|ref|YP_004826252.1| Exoribonuclease II [Rhodothermus marinus SG0.5JP17-172]
gi|345113583|gb|AEN74415.1| Exoribonuclease II [Rhodothermus marinus SG0.5JP17-172]
Length = 659
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 148/295 (50%), Gaps = 10/295 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R D THL + ID E+DDA + L +G ++ IH+AD ++ P + D+ A +
Sbjct: 262 DRTDFTHLPAFHIDDATTREIDDAFTVEPLPEGGWRLGIHLADVPHFVAPDDVLDQAAQR 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LPT + PM PE+L+ + SLR + ++V V + + I + + I+
Sbjct: 322 RGLTRYLPTGSIPMLPERLSHDLASLRPDAIRPTLSVVVTVDASEQIRDVQLVRGQIRVA 381
Query: 304 YMLTYESATELLHLNLEEE-AE-LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+ TYE+A +L E AE L++L+ + + RL +GA+ E +++V
Sbjct: 382 HGFTYETADAVLSGETPHELAEALQVLARLSQTLTEARLARGALLIRRPELKVQVDG--- 438
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQSNIDVSAFAH 420
I L V D PA R+VSE MIL A + + N L + YR Q P + ++
Sbjct: 439 --DTITLKVIDPDTPARRMVSEWMILANAEAARWAAENELPMIYRVQDPPDDPELQG-RK 495
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
L PV ++ ++ +R P H LGL YVQ TSPIRRY DL Q+
Sbjct: 496 LDYDPVLLASRLRGLRRTRFS-THPQPHAGLGLEAYVQITSPIRRYADLALQRQI 549
>gi|379728870|ref|YP_005321066.1| ribonuclease R [Saprospira grandis str. Lewin]
gi|378574481|gb|AFC23482.1| ribonuclease R [Saprospira grandis str. Lewin]
Length = 986
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 151/337 (44%), Gaps = 45/337 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E + R DL + + ID A + DDALS L +G ++ IH+AD T Y+ G
Sbjct: 281 LEIPESEIQKRLDLRQIPTFTIDPATAKDFDDALSVEMLDNGNYRIGIHIADVTYYVAKG 340
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A KR TSV+L PM PEKL+ SLR E + L++ G + E
Sbjct: 341 SPLDKEAAKRTTSVYLVDRVLPMLPEKLSNGVCSLRPHEDKLTFSALFELNAKGHVVEEW 400
Query: 295 VDNSIIKPTYMLTYESATELLH-LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
++I YE A E+L EL+IL+ A + + R ++GAI + E R
Sbjct: 401 FGKTVIHSDQRFAYEEAQEILDGAEGPYSQELRILNRYAHILRKARFKKGAISFESPEVR 460
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG------------------------ 389
K+ ED +P +++Y++ + D M LV + M+L
Sbjct: 461 FKL--DEDGKP-VDVYLKHRKDAHM-LVEDFMLLANRRVGAKIMNIYRNGGKEIPFVYRI 516
Query: 390 ------EAIATYGSFNNLALPYRGQPQSNIDVS-AFAHL-------PEGPVRSSAIVKIM 435
E + +G F L YR + Q V+ AF + PE V ++ M
Sbjct: 517 HDLPDMEKVNGFGKF-AAQLGYRLKIQDVEQVAGAFNKMLKAAEGKPEHAVLHQLGIRTM 575
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AA + + H LG Y FTSPIRRY D+L H
Sbjct: 576 SKAAYSTQN-IGHYGLGFEDYSHFTSPIRRYADVLVH 611
>gi|384160988|ref|YP_005543061.1| ribonuclease R [Bacillus amyloliquefaciens TA208]
gi|384165876|ref|YP_005547255.1| ribonuclease R [Bacillus amyloliquefaciens LL3]
gi|384170071|ref|YP_005551449.1| ribonuclease R [Bacillus amyloliquefaciens XH7]
gi|328555076|gb|AEB25568.1| ribonuclease R [Bacillus amyloliquefaciens TA208]
gi|328913431|gb|AEB65027.1| ribonuclease R [Bacillus amyloliquefaciens LL3]
gi|341829350|gb|AEK90601.1| ribonuclease R [Bacillus amyloliquefaciens XH7]
Length = 777
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMNRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGTAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|406966972|gb|EKD92195.1| hypothetical protein ACD_29C00127G0001 [uncultured bacterium]
Length = 726
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 154/328 (46%), Gaps = 43/328 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L NRKDL H+ ID ++A + DDA+ + + + + +AD Y++P + D +
Sbjct: 268 DLNNRKDLRHIPFVTIDGEDARDFDDAVFCEFIDGDKWRALVAIADVAYYVKPNTALDIE 327
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV--SVVLHSDGSIAEYSVDNS 298
A RG SV+ P+ PM PEKL+ + SL+ C+ +T+ ++L ++G++ EY DN+
Sbjct: 328 AQLRGNSVYFPSRVIPMLPEKLSNDLCSLKAN--CDRLTIVCEMILDANGNMLEYHFDNA 385
Query: 299 IIKPTYMLTY-ESATELLHLNLEEE---AELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+I LTY + A E+ N +E ++ L + + R +GAID T+ET+I
Sbjct: 386 VIFSKARLTYTQVAAEINGENSIDENLKKPIQNLYQFFKILFTQRQLRGAIDFETIETQI 445
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-------- 406
DP I+ V+ + A R++ EMM+L + A + L YR
Sbjct: 446 LF----DPNGKIDRIVQRHRNVAHRIIEEMMLLANQTTAHFLETLQLPTIYRVHDLPDDT 501
Query: 407 ------------------GQPQSNIDVSAF----AHLPEGPVRSSAIVKIMRAAAIDFRK 444
G + +D + A+ P+ + + +++ M+ A
Sbjct: 502 KLLALRDFLKAFGLVLPGGDKPTALDYAKLLKHVANRPDAHLIQTVMLRSMKQAIYTVEN 561
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L GY FTSPIRRY DLL H
Sbjct: 562 RGHFG-LSYEGYCHFTSPIRRYPDLLIH 588
>gi|326389835|ref|ZP_08211399.1| ribonuclease R [Thermoanaerobacter ethanolicus JW 200]
gi|325994103|gb|EGD52531.1| ribonuclease R [Thermoanaerobacter ethanolicus JW 200]
Length = 720
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L ID ++A +LDDA+ +L + +Y+ +AD + Y++ GS DK+A+KR
Sbjct: 244 RIDLTNLNFVTIDGEDAKDLDDAVCVQKLSEENYLLYVSIADVSHYVKEGSHLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|308175107|ref|YP_003921812.1| ribonuclease R [Bacillus amyloliquefaciens DSM 7]
gi|307607971|emb|CBI44342.1| ribonuclease R [Bacillus amyloliquefaciens DSM 7]
Length = 777
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMNRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGTAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|345017427|ref|YP_004819780.1| ribonuclease R [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032770|gb|AEM78496.1| ribonuclease R [Thermoanaerobacter wiegelii Rt8.B1]
Length = 727
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L ID ++A +LDDA+ +L + +Y+ +AD + Y++ GS DK+A+KR
Sbjct: 244 RIDLTNLNFVTIDGEDAKDLDDAVCVQKLSEENYLLYVSIADVSHYVKEGSHLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPLDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IVFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|394994272|ref|ZP_10386996.1| ribonuclease R [Bacillus sp. 916]
gi|393804885|gb|EJD66280.1| ribonuclease R [Bacillus sp. 916]
Length = 777
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNQIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|392941226|ref|ZP_10306870.1| LOW QUALITY PROTEIN: ribonuclease R [Thermoanaerobacter
siderophilus SR4]
gi|392292976|gb|EIW01420.1| LOW QUALITY PROTEIN: ribonuclease R [Thermoanaerobacter
siderophilus SR4]
Length = 720
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 154/327 (47%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+L ID ++A +LDDA+ +L + +Y+ +AD + Y++ GS DK+A+KR
Sbjct: 244 RIDLTNLNFVTIDGEDAKDLDDAVCVQKLSEENYLLYVSIADVSHYVKEGSHLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P KL+ SL E +TV + ++S G + ++ + SIIK
Sbjct: 304 GCSVYFIDRVIPMLPPKLSNGICSLNPQEERLTLTVKMKINSQGEVVDHEIFESIIKSKE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + +LL N EE + K++ E A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKLLEENDEELKKRYQYLLEDFKLMKELALVLLEKRKRRGSVDFDFPEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M+ E +A + + N+ YR +I+
Sbjct: 424 DEKGKPIDIVKV----ERNIAHRIIEEFMLAANETVAEHMHWLNVPFVYRIHEHPDIEKL 479
Query: 415 --VSAFAH--------LPEGPVRSSAIVKIMR----------AAAIDFR---------KP 445
+ F H + G + ++ +++R + R +
Sbjct: 480 IAFNKFIHNLGYHIKGIEGGQIHPKSLQELIRQVRGKSEQRVVETLLLRSLKRARYSPED 539
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DL+ H
Sbjct: 540 IGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|301063080|ref|ZP_07203641.1| RNB-like protein [delta proteobacterium NaphS2]
gi|300442800|gb|EFK07004.1| RNB-like protein [delta proteobacterium NaphS2]
Length = 660
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 149/297 (50%), Gaps = 24/297 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L V ID + + DDA+S + + DG +++ +H+AD +E G+ D A +R
Sbjct: 269 REDLRSLPVVTIDGPKTRDFDDAIS-LEMVDGEMRIGVHIADVAAVVEEGNPIDAAAKER 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIKP 302
+S++LP PM P+ L+ + +SL+ E C+ +S++ + DG + Y SII+
Sbjct: 328 ASSLYLPGRQIPMIPKDLSQDLLSLK--EACDRPAISLLARFNQDGLLLRYRFTTSIIRV 385
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
LTY+ E NL +++ + L A + Q R+ +GA++ + E + D
Sbjct: 386 QRRLTYQEVNE----NLLKQSRFQNLHRLAEILRQERMDRGAMNLSLPELEVD----RDA 437
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN----IDVSAF 418
+ + L + Q P+ +++E MIL + A + NN+ + +RGQ Q +D +
Sbjct: 438 DGTLKLELVPQDSPSRMIIAEFMILYNQLAARFCLQNNIPVLFRGQTQPTEKLPLDEKGY 497
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ R + ++I P H LG+ Y Q TSPIRRY+DL+ Q+
Sbjct: 498 IYYVFQQRRKLSPLQIS-------THPKPHSGLGVELYTQATSPIRRYLDLVVQRQL 547
>gi|375363806|ref|YP_005131845.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421730233|ref|ZP_16169362.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451345484|ref|YP_007444115.1| ribonuclease R [Bacillus amyloliquefaciens IT-45]
gi|371569800|emb|CCF06650.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407076199|gb|EKE49183.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449849242|gb|AGF26234.1| ribonuclease R [Bacillus amyloliquefaciens IT-45]
Length = 777
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|91200154|emb|CAJ73198.1| similar to ribonuclease R [Candidatus Kuenenia stuttgartiensis]
Length = 730
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 107/344 (31%), Positives = 169/344 (49%), Gaps = 44/344 (12%)
Query: 168 HKDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYI 222
HK +SN +K ++ + R DL + ID D+A + DDALS + + G ++ +
Sbjct: 230 HKKVSNEAEKISQEIPQEEIQTRLDLRKKLIITIDPDDAKDFDDALSLEKDERGNWQLGV 289
Query: 223 HVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSV 282
H+AD + Y++ S DK+A RGTSV+LP PM PE L+ SLR+GE +V V
Sbjct: 290 HIADVSYYVKQDSAIDKEARLRGTSVYLPGKVIPMLPEALSNNLCSLREGEDRLTKSVLV 349
Query: 283 VLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHL----NLEEEAE--LKILSEAAALRL 336
+ +G+I + +V +S+I T LTY+ AT +++ N+ E + L L++ A +
Sbjct: 350 TIDPEGNILKSTVKHSVINVTKRLTYKQATAIINNESAGNIPEMVKDVLVELAQLAQILF 409
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
+ ++ +GAI+ E +K+ D E I +++ D + RLV E M+L E +AT+
Sbjct: 410 KNKMNRGAIELDLPEVSLKL----DEEGNIEKVEKEERDVSHRLVEECMLLANEMVATFM 465
Query: 397 SFNNLALPYRGQPQSN-IDVSAFAHL---------------------------PEGPVRS 428
N L L R P+ + D+ FA PE + +
Sbjct: 466 HKNKLPLISRVHPEPDEEDMLEFADFVRGLENTRVDPFKIHQLQAFLAEIRGKPEAHMVN 525
Query: 429 SAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++K M+ A + H L L Y FTSPIRRY DL+ H
Sbjct: 526 LVLLKSMKQAVYSATES-GHFALALENYAHFTSPIRRYPDLIIH 568
>gi|154687491|ref|YP_001422652.1| ribonuclease R [Bacillus amyloliquefaciens FZB42]
gi|154353342|gb|ABS75421.1| Rnr [Bacillus amyloliquefaciens FZB42]
Length = 777
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|325103978|ref|YP_004273632.1| RNAse R [Pedobacter saltans DSM 12145]
gi|324972826|gb|ADY51810.1| RNAse R [Pedobacter saltans DSM 12145]
Length = 705
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 40/331 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D + ID +A + DDA+S +L++G ++ +H+AD + Y++P S
Sbjct: 243 SQEEIKKRRDFRDTLTFTIDPFDAKDFDDAISFKKLENGNYEIGVHIADVSHYVQPESSL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM PE+L+ SLR E + + ++ + I
Sbjct: 303 DKEAFERGTSVYLVDRVIPMLPERLSNNLCSLRPLEDKLSFSAVFEINDEAQILNEWYGK 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKI-LSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE A E++ E AE I L++ A + R +QGAI+ + E + K+
Sbjct: 363 TVINSNRRFTYEEAQEIIENESGEYAEEIITLNKLAYILRDKRFKQGAINFESAEVKFKL 422
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-----NNLALPYRGQPQS 411
E+ +PI +YV+++ D A +L+ + M+L +A + S + L YR
Sbjct: 423 --DENGKPI-GVYVKERKD-AHKLIEDFMLLANRKVAEFISKKGKGKHRLTFVYRAHDSP 478
Query: 412 NID-VSAFAHLP--------------------------EGPVRSSAIVKIM---RAAAID 441
N++ ++ F+ EG + + ++ A AI
Sbjct: 479 NMETLNTFSQFASRFGYKISTKSDRDISRSLNKLMADVEGKKEQNVLTQLAIRSMAKAIY 538
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K H L Y FTSPIRRY D+L H
Sbjct: 539 TTKSSSHYGLAFDFYTHFTSPIRRYPDVLVH 569
>gi|384266907|ref|YP_005422614.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387899984|ref|YP_006330280.1| ribonuclease R [Bacillus amyloliquefaciens Y2]
gi|380500260|emb|CCG51298.1| ribonuclease R [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387174094|gb|AFJ63555.1| ribonuclease R [Bacillus amyloliquefaciens Y2]
Length = 777
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|452973383|gb|EME73205.1| ribonuclease R [Bacillus sonorensis L12]
Length = 764
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 157/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS D
Sbjct: 242 EQDLSGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEGSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A +RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMTINRQGQVIEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE E + + E AA+ + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKEKYEALVPMFQDMEELAAILREKRMERGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E V + A +L+ E M++ E +A + + ++ YR
Sbjct: 422 EAKVLV----DEEGAAKDIVLRERSTAEKLIEEFMLVANETVAEHFHWMDVPFIYRIHED 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
+ + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PDQEKLQKFLEFVTTFGYVVKGAAGSIHPKALQKVLDDVRDTPEEAVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|55980879|ref|YP_144176.1| exoribonuclease [Thermus thermophilus HB8]
gi|55772292|dbj|BAD70733.1| exoribonuclease [Thermus thermophilus HB8]
Length = 744
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 158/334 (47%), Gaps = 45/334 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ LTY E+ E L EE A +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRLLLDLTQRMREKRLKEGALDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYR 406
A E +++V + L++ QA+P R L+ E+M+L +A Y L +R
Sbjct: 394 AFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFR 447
Query: 407 GQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D A A L PE PV + +++ +R A
Sbjct: 448 VHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L + Y+ FTSPIRRY DL+ H
Sbjct: 508 RYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVH 540
>gi|312621629|ref|YP_004023242.1| ribonuclease r [Caldicellulosiruptor kronotskyensis 2002]
gi|312202096|gb|ADQ45423.1| ribonuclease R [Caldicellulosiruptor kronotskyensis 2002]
Length = 716
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 164/339 (48%), Gaps = 54/339 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL +L ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRNLTIFTIDGEDAKDFDDAVSIQKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A KRGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYKRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVMMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIH 573
>gi|326509537|dbj|BAJ91685.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 319
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 91/141 (64%), Gaps = 4/141 (2%)
Query: 63 GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDS 122
G+ + LVDSV+QEL + R+ + EL + K+E + +QKGLLLEF KDS
Sbjct: 42 GATAACRGRLVDSVLQELRSRRRVRVSARIGLQGTKELSDSKIEKKPIQKGLLLEFHKDS 101
Query: 123 DRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNL 182
+R LLAV +RPDGKKNW+V DQNG SIKPQQVT+VVPG FD I+ FL+KA+D L
Sbjct: 102 ERSLLAVVERPDGKKNWVVTDQNGILSSIKPQQVTYVVPGTMDFDCSRIAEFLEKAQDLL 161
Query: 183 LNRKDLTHLKVYAIDVDEADE 203
D + L+ +++ E D+
Sbjct: 162 ----DPSILECAWLELSEKDK 178
>gi|187934548|ref|YP_001887237.1| ribonuclease R [Clostridium botulinum B str. Eklund 17B]
gi|187722701|gb|ACD23922.1| ribonuclease R [Clostridium botulinum B str. Eklund 17B]
Length = 746
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 158/328 (48%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL L++ ID ++A +LDDA+S +L+DG K+ +H+AD T Y+ ++ DK+A+KR
Sbjct: 252 RVDLRDLRMVTIDGEDAKDLDDAVSIEKLEDGNFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A++ +V+++ G++ ++ + S+IK +
Sbjct: 312 ATSVYLIDRVIPMLPKQLSNGICSLNPKVDRLALSCFMVINNKGTVVDHEIMESVIKTSE 371
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L N EE + K++ E + R+++GAID E++I
Sbjct: 372 RMTYTDVTKILRDNDEELIKKYDYLCDDFKLMEELCLILRSKRMKRGAIDFDFEESKIIL 431
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP---- 409
++ P D +P + + A +++ E M++C E +A + ++ L YR
Sbjct: 432 DEMGKPIDIKPY-------EREIANKIIEEFMLICNETVAEHMFWSKLPFVYRVHETPDE 484
Query: 410 -------------------QSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDFR---K 444
+++ + E G + + ++ + + R +
Sbjct: 485 EKLVKFKEFIYNLGYKINWSEDVNPKTLQSILEQVKGKKEETIVSTLLLRSMMQARYAPE 544
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY DL H
Sbjct: 545 CVGHFGLAAQYYCHFTSPIRRYPDLQIH 572
>gi|110636884|ref|YP_677091.1| exoribonuclease II [Cytophaga hutchinsonii ATCC 33406]
gi|110279565|gb|ABG57751.1| RNAse R [Cytophaga hutchinsonii ATCC 33406]
Length = 750
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 154/337 (45%), Gaps = 47/337 (13%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ +E + R+D+ + ID ++A + DDA+S L +G ++ +H+AD + Y++PG
Sbjct: 262 ETSEAEIKKRRDMRGTTTFTIDPEDAKDFDDAISFKYLDNGNWEIGVHIADVSHYVQPGD 321
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEY 293
DK+A +R TSV+L PM PE+L+ E SLR E + +T S + +D + +
Sbjct: 322 TLDKEAYRRATSVYLVDRCVPMLPERLSNELCSLRPNE--DKLTFSAIFEIDADAKVLDE 379
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLET 352
+II T +YE A E++ + EL IL+ A R ++GAI T+E
Sbjct: 380 WFGRTIIHSTRRFSYEQAQEVIETQQGDLVKELTILNTLAKKMRAQRFKEGAISFETVEV 439
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYR 406
+ ++ P ++ +D A +L+ E M+L + +A + G + + YR
Sbjct: 440 KFQLDAKGKPLAVVPKVRKD----AHKLIEEFMLLANKRVAEFVFNLRKGKGTSNTMVYR 495
Query: 407 GQ----PQSNIDVSAFAHL---------------------------PEGPVRSSAIVKIM 435
P+ ++ FA PE V S ++ M
Sbjct: 496 THDAPNPEKLASLATFAKRFGHKVELDDENAIAKNLNKLSDEVEGKPEQNVLQSLAIRTM 555
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ AI +P H L Y FTSPIRRY D++AH
Sbjct: 556 -SKAIYSIEPDMHFGLAFKHYSHFTSPIRRYPDVMAH 591
>gi|375089667|ref|ZP_09735992.1| ribonuclease R [Facklamia languida CCUG 37842]
gi|374566514|gb|EHR37753.1| ribonuclease R [Facklamia languida CCUG 37842]
Length = 785
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 153/330 (46%), Gaps = 43/330 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R DL + ID +A +LDDA+S ++ D ++ +H+AD + Y+ GS D++
Sbjct: 256 DLQGRDDLRDQLIITIDGADAKDLDDAISLQKVSDNEYQLGVHIADVSHYVTEGSPIDRE 315
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P++L+ SL E +T + ++ G + Y + S+I
Sbjct: 316 AYERGTSVYLTDRVVPMLPQRLSNGICSLHPHEDRLTLTCQMTINKQGKVTNYRLFKSVI 375
Query: 301 KPTYMLTYESATELLHLNL----EEEAELKILSEAAALR---LQWRLQQGAIDTATLETR 353
+ Y +TY +L +L E E +++L E A L LQ R Q+GA+D E +
Sbjct: 376 QSAYRMTYRDVNAILDGDLALRKEYEEIVEMLDEMAELHQILLQMRKQRGALDFDAPEAK 435
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP-Q 410
I V P+ II Q RL+ M++ E +A + N YR QP +
Sbjct: 436 IVVDEEGHPQDIILR----QRYTGERLIESFMLIANETVAAHVLQKNYPFLYRIHEQPDE 491
Query: 411 SNID-----VSAFAHLPEG-----------------------PVRSSAIVKIMRAAAIDF 442
+ +D +++F + G V S+ +++ M+ A
Sbjct: 492 AKMDRFADFITSFGIILRGDTAKIEPKQLQAALKQVKGTEFEQVVSTMMLRSMQQAKYS- 550
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P H L Y FTSPIRRY DL+ H
Sbjct: 551 EEPAGHFGLASEDYTHFTSPIRRYPDLIVH 580
>gi|225619602|ref|YP_002720859.1| VacB, Exoribonuclease R [Brachyspira hyodysenteriae WA1]
gi|225214421|gb|ACN83155.1| VacB, Exoribonuclease R [Brachyspira hyodysenteriae WA1]
Length = 661
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 160/325 (49%), Gaps = 44/325 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R DL ++ ID ++ + DDA+S +L D K+ IH+AD + ++ GS D++A
Sbjct: 152 FDRIDLRDIRTVTIDGADSKDFDDAISIEKLNDC-YKLGIHIADVSHFVVMGSALDREAR 210
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
KRG SV+L YPMFP +L+ SL +G +TV V + + G++ E + S+IK
Sbjct: 211 KRGNSVYLIDTVYPMFPHELSNGICSLNEGVSRFTMTVFVTIDNKGNVKESTFHKSVIKS 270
Query: 303 TYMLTYESATELLH-LNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRI---K 355
+ LTY+ A ++L + +E+ +++L A ++ LQ R+ G+I+ ET+I K
Sbjct: 271 SRRLTYDYAQDVLDGIEQDEDWLVELLKNADDVKKILLQKRIDNGSIEFNLNETQIILDK 330
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--------------------TY 395
NP+D ++ ++ + +++ E+M++ +A
Sbjct: 331 GGNPKD------FFIGERKE-THKIIEELMLIANCEVAKRLKNIKGSIYRVHDSPDQEKL 383
Query: 396 GSFNNLALP--YR--GQPQSNIDVSAFAH----LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+F +A YR N+D +F P+ + + +++ M+ A D +
Sbjct: 384 DTFTRIAFNRGYRLTRDADGNLDFHSFIESIMGKPDEKLLLTLLLRSMKQAIYDVNN-IG 442
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H LG Y FTSPIRRY DLL H
Sbjct: 443 HFGLGFEYYTHFTSPIRRYTDLLTH 467
>gi|269468385|gb|EEZ80050.1| exoribonuclease R [uncultured SUP05 cluster bacterium]
Length = 601
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 157/298 (52%), Gaps = 26/298 (8%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++R DLTHL YAID + + DDA+S DG K+++H+AD + + PGS D A
Sbjct: 218 VDRTDLTHLHSYAIDNVGSTDADDAISI----DGD-KIWVHIADVSAIVVPGSDLDAYAQ 272
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R ++++LP M P + E +L E NA++V VL +G I V S+IK
Sbjct: 273 ERASNLYLPEQILHMLPISIT-ELCALGISETSNALSVGFVLE-EGEINNIEVIRSLIKV 330
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAI--DTATLETRIKVANPE 360
T ++Y+ A + L N + ++LK + EA Q+R AI D ++ R +
Sbjct: 331 T-NISYDEADDFLDKN-KHLSKLKAVVEAHK---QYRDAHNAISLDLPNVDVRFR----- 380
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
+ ++ + + ++ + L++EMMI+ G AIA + N++ +PY Q + + +
Sbjct: 381 --DDLVTITAQ-KSSQSRELIAEMMIMAGRAIAKFSVENDIVMPYAIQDEGDFPKETLDN 437
Query: 421 LPEGPVRSSAIVKIMRA--AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
+G + SA K + + KP++H LGL Y++ TSP+RRY+DLL H Q+
Sbjct: 438 --KGSLTLSASFKATKCFKRSATSTKPLQHYGLGLEAYLRVTSPLRRYLDLLVHQQLS 493
>gi|212550560|ref|YP_002308877.1| ribonuclease R [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
gi|212548798|dbj|BAG83466.1| putative ribonuclease R [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 586
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 154/334 (46%), Gaps = 51/334 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + ID A + DDALS +L + ++ +H+AD T YI+P S DK+A+K
Sbjct: 122 NREDFRETLTFTIDPQNAKDFDDALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEALK 181
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG--SIAEYSVDNSIIK 301
RGTS++L PM PE L E SLR E + + SV+ DG I Y + +II+
Sbjct: 182 RGTSIYLVDKVIPMLPESLCNEVCSLRPNE--DKLCFSVIFEMDGKAKIHNYRIRRTIIR 239
Query: 302 PTYMLTYESATELLH----LNLEE---EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+ TYE A E++ N E+ + + L+ A + + R G+ID E +
Sbjct: 240 SDHRFTYEEAQEIIERSFATNYEDCSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQF 299
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLALPY----RG 407
+ +P +++Y++ + + A +LV E M+L + IA G N A P+ G
Sbjct: 300 DLDREGNP---LDIYLK-KNNEANQLVEEFMLLANKTIAEIVGKVPKNKRAKPFVYRVHG 355
Query: 408 QP--------------------------QSNIDVSAFAHLPEGPVRSSAIVKI-MRA--A 438
P +++ ++S+ +G + I I +R
Sbjct: 356 LPDIEKIKNLKQLVRSFGYKLNIKRINNETSKNISSLFKQVQGTREQNLIETIALRTMEK 415
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI + V H L Y FTSPIRRY D++ H
Sbjct: 416 AIYTTENVGHYGLAFKYYTHFTSPIRRYPDMIVH 449
>gi|441495903|ref|ZP_20978141.1| 3'-to-5' exoribonuclease RNase R [Fulvivirga imtechensis AK7]
gi|441440438|gb|ELR73703.1| 3'-to-5' exoribonuclease RNase R [Fulvivirga imtechensis AK7]
Length = 719
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 73/353 (20%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS + K E + RKD + + ID ++A + DDALS L++G ++ +H+AD T Y
Sbjct: 249 ISEKITKQE--IEKRKDFRDVLTFTIDPEDAKDFDDALSFKNLENGNFEIGVHIADVTHY 306
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--G 288
++PG++ +++A R TSV+L T PM PE+L+ SLR E + +T + V D
Sbjct: 307 VQPGTILEQEAFDRATSVYLVDRTVPMLPERLSNGLCSLRPKE--DKLTFAAVFEMDEEA 364
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDT 347
++ + +II TYE A + + + A EL+ L++ A + R +GA++
Sbjct: 365 NVIKEWFGRTIIHSDRRFTYEEAQGGIETGVGDYAKELQKLNDLAKKLRKERFNRGAVNF 424
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------ 395
T E + K+ P +I +D A +L+ E M+L + +AT+
Sbjct: 425 ETTEVKFKLDEKGKPLGVIPKVRKD----AHKLIEEFMLLANKKVATFVFGMKKGEDKNT 480
Query: 396 --------------GSF----------------------NNLALPYRGQPQSNIDVSAFA 419
G+F N L G+P+ N+
Sbjct: 481 FVYRTHDFPDPEKVGTFAQFAKRFGHELKTDQGAISQSLNKLMTSIEGKPEENV------ 534
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
L + +RS A K A H L P Y FTSPIRRY D++ H
Sbjct: 535 -LQQLAIRSMAKAKYTTEA-------TGHFGLAFPHYTHFTSPIRRYPDMMVH 579
>gi|406894258|gb|EKD39117.1| hypothetical protein ACD_75C00507G0012 [uncultured bacterium]
Length = 666
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 148/329 (44%), Gaps = 59/329 (17%)
Query: 173 NFLQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+ LQ+ +++L N R DLTHL ID + DD+LS + DG V IH++D
Sbjct: 262 HILQRGQNDLFNDPGRIDLTHLAPLTIDGPTTLDFDDSLSLEEV-DGNYLVGIHISDVAY 320
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y+ PG +AM RGTS++ P PM P L+ SL QGE ++ ++L +
Sbjct: 321 YVRPGDALFSEAMHRGTSIYFPEGQIPMLPRHLSQGICSLIQGETRATISFMILLSPEAE 380
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTAT 349
I + + SI + LTY+ ++ LE + E+KIL+ RL+ GA+
Sbjct: 381 ILKVRISPSITRVKRRLTYDEVDKM----LETDPEIKILNMLRRKLRTERLKNGALLL-- 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQAD----------PAMRLVSEMMILCGEAIATYGSFN 399
P P +N++++ QA PA ++SEMMIL A Y +
Sbjct: 435 ------------PFPDVNIFIDHQAKVHVSLSKSDTPARTIISEMMILANTVAAKYVADR 482
Query: 400 NLALPYRGQP--QSNI----DVSAFAH------LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+ +R QP Q+ I D F + LP G + ++A
Sbjct: 483 MVPGLFRSQPILQNRIVHGEDDDLFQNTLQRKQLPRGELSTTA---------------KS 527
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
H LG+ Y TSPIRR +DL+ +Q+
Sbjct: 528 HSGLGVSHYTTVTSPIRRLLDLVMQHQLN 556
>gi|385266262|ref|ZP_10044349.1| ribonuclease R [Bacillus sp. 5B6]
gi|385150758|gb|EIF14695.1| ribonuclease R [Bacillus sp. 5B6]
Length = 777
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 157/339 (46%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ +R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ S D
Sbjct: 242 EKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY +L E++AELK E A LR + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNRIL---TEDDAELKERYEPLVPMFKDMERLAEILRAK-RMDRGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PQSLGHFGLATEFYTHFTSPIRRYPDLIVH 569
>gi|297618003|ref|YP_003703162.1| ribonuclease R [Syntrophothermus lipocalidus DSM 12680]
gi|297145840|gb|ADI02597.1| ribonuclease R [Syntrophothermus lipocalidus DSM 12680]
Length = 703
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/337 (29%), Positives = 157/337 (46%), Gaps = 53/337 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED L R+DL K+ ID ++A +LDDA+S R Q G ++ +H+AD + Y+ G +
Sbjct: 238 GEDELAQRRDLREWKMVTIDGEDAKDLDDAVSIERTQGG-YRLGVHIADVSHYVSEGGVL 296
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P +L+ SL GE AV+V + + G + Y +
Sbjct: 297 DKEAFRRGTSVYLTDRVLPMLPPELSNGICSLNAGEDRLAVSVVMDIDEKGEVRNYEIFK 356
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK-----------ILSEAAALRLQWRLQQGAID 346
S+I+ +TY ++L LE + +L+ ++ E + + R+ +GA+D
Sbjct: 357 SVIRVKERMTYTDVNKIL---LENDPDLRTRYSELVPDFEVMGELCRILRKRRMDKGALD 413
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP-- 404
ET+I V E P+ +E Q A ++ E MI E +A + +L +P
Sbjct: 414 FDFPETKIIVD--EKGWPVAVARMERQL--AEMIIEEFMIKANEVVAEH--LYSLKVPTL 467
Query: 405 YRGQPQSNID--------VSAFAH---------------------LPEGPVRSSAIVKIM 435
YR + + D + F H PE S+ I++ M
Sbjct: 468 YRVHERPDEDSIRELNRVLGVFGHRVAEREVQPKHFQEILEKIKDRPEERTVSTIILRSM 527
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
R A +P+ H L Y FTSPIRRY DL+ H
Sbjct: 528 RHARY-APQPLGHFGLASAYYTHFTSPIRRYPDLVVH 563
>gi|188588711|ref|YP_001922180.1| ribonuclease R [Clostridium botulinum E3 str. Alaska E43]
gi|188498992|gb|ACD52128.1| ribonuclease R [Clostridium botulinum E3 str. Alaska E43]
Length = 746
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 158/328 (48%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +L++ ID ++A +LDDA+S +L DG K+ +H+AD T Y+ ++ DK+A+KR
Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGNFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A++ +V+++ G++ ++ + S+IK +
Sbjct: 312 ATSVYLIDRVIPMLPKQLSNGICSLNPKVDRLALSCFMVINNKGTVVDHEIMESVIKTSE 371
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L N EE + K++ E + R+++GAID E++I
Sbjct: 372 RMTYTDVTKILRDNDEELIKKYDYLCDDFKLMEELCLILRNKRMKRGAIDFDFEESKIIL 431
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP---- 409
++ P D +P + + A +++ E M++C E +A + ++ L YR
Sbjct: 432 DEMGKPIDIKPY-------EREIANKIIEEFMLVCNETVAEHMFWSKLPFVYRVHETPDE 484
Query: 410 -------------------QSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDFR---K 444
+++ + E G + + ++ + + R +
Sbjct: 485 EKLVKFKEFIYNLGYKINWSEDVNPKTLQSILEQVKGKKEETIVSTLLLRSMMQARYAPE 544
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY DL H
Sbjct: 545 CVGHFGLAAQYYCHFTSPIRRYPDLQIH 572
>gi|312126880|ref|YP_003991754.1| ribonuclease r [Caldicellulosiruptor hydrothermalis 108]
gi|311776899|gb|ADQ06385.1| ribonuclease R [Caldicellulosiruptor hydrothermalis 108]
Length = 716
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 164/339 (48%), Gaps = 54/339 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL +L ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRNLTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P +I + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVIRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIH 573
>gi|187777180|ref|ZP_02993653.1| hypothetical protein CLOSPO_00726 [Clostridium sporogenes ATCC
15579]
gi|187774108|gb|EDU37910.1| ribonuclease R [Clostridium sporogenes ATCC 15579]
Length = 725
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 158/336 (47%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S RL +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRRKDLRDLTIVTIDGEDAKDLDDAISLERLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHKVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKRRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I++ ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|449549781|gb|EMD40746.1| CsMn04 [Ceriporiopsis subvermispora B]
Length = 1467
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 156/337 (46%), Gaps = 51/337 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL +++ ID D A +LDDALS +DG V +HVAD + +++P + D+DA KR
Sbjct: 894 RKDLRGERIFTIDPDTAKDLDDALSVKANEDGTYDVGVHVADVSYFVKPNTALDRDARKR 953
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL GE A TV + +G + + S+I+ T
Sbjct: 954 ATSVYLIQRAVPMLPPALSEQLCSLVPGEDRLAFTVIFTMTKEGKVLKKWFGKSVIRSTA 1013
Query: 305 MLTYESA------TELLHLNLEEEAE------LKILSEAAALRLQWRLQQGAIDTATLET 352
L+YE+A EL++ + E E +KIL A L R Q G + T +L+
Sbjct: 1014 KLSYENAQAVLQGKELINKPVGEHNEADIANDIKILDSLAQLLRSRRFQNGCVKTESLKL 1073
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS--FNNLALPYRGQPQ 410
K+ + P ++ + D+ + A LV E M+L A+A + F+ AL R
Sbjct: 1074 SFKLDDNGMP---VDCWPHDRIE-AHHLVEEFMLLTNIAVAQQIAVHFSEQALLRRHDAP 1129
Query: 411 ----------------SNIDVSAFAHL------PEGPV----------RSSAIVKIMRAA 438
+D+S+ A L + P ++S K A
Sbjct: 1130 IERRLVAFVQRAERLGYKMDISSVATLMSSLQAVQDPTARRILEMLLQKASPRAKYFCAG 1189
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+D K H L +P Y FTSPIRRY D+L H Q+
Sbjct: 1190 MLDIAK-YTHYALNVPLYTHFTSPIRRYADILVHRQL 1225
>gi|251780958|ref|ZP_04823878.1| ribonuclease R [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243085273|gb|EES51163.1| ribonuclease R [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 746
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 159/328 (48%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +L++ ID ++A +LDDA+S +L DG K+ +H+AD T Y+ ++ DK+A+KR
Sbjct: 252 RVDLRNLRMVTIDGEDAKDLDDAVSIEKLDDGSFKLGVHIADVTHYVRENNILDKEALKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A++ +V+++ G++ ++ + S+IK +
Sbjct: 312 ATSVYLIDRVIPMLPKQLSNGICSLNPKVDRLALSCFMVINNKGTVVDHEIMESVIKTSE 371
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L N EE + K++ E + + R+++GAID E++I
Sbjct: 372 RMTYTDVTKILRDNDEELIKKYDYLCDDFKLMEELCLILRRKRMKRGAIDFDFEESKIIL 431
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP---- 409
++ P D +P + + A +++ E M++C E +A + ++ L YR
Sbjct: 432 DEMGKPIDIKPY-------EREIANKIIEEFMLVCNETVAEHMFWSKLPFVYRVHETPDE 484
Query: 410 -------------------QSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDFR---K 444
+++ + E G + + ++ + + R +
Sbjct: 485 EKLVKFKEFIYNLGYKINWSEDVNPKTLQSILEQVKGKKEETIVSTLLLRSMMQARYAPE 544
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY DL H
Sbjct: 545 CVGHFGLAAQYYCHFTSPIRRYPDLQIH 572
>gi|386360571|ref|YP_006058816.1| ribonuclease R [Thermus thermophilus JL-18]
gi|383509598|gb|AFH39030.1| ribonuclease R [Thermus thermophilus JL-18]
Length = 743
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 157/334 (47%), Gaps = 45/334 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G +V +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPKG-YRVGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ LTY E+ E L EE A +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRLLLDLTQRMREKRLKEGALDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYR 406
E +++V + L++ QA+P R L+ E+M+L +A Y L +R
Sbjct: 394 GFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFR 447
Query: 407 GQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D A A L PE PV + +++ +R A
Sbjct: 448 VHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L + Y+ FTSPIRRY DL+ H
Sbjct: 508 RYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVH 540
>gi|255506981|ref|ZP_05382620.1| exoribonuclease II [Chlamydia trachomatis D(s)2923]
gi|389858090|ref|YP_006360332.1| exoribonuclease II [Chlamydia trachomatis F/SW4]
gi|389859842|ref|YP_006362082.1| exoribonuclease II [Chlamydia trachomatis F/SW5]
gi|380249162|emb|CCE14454.1| exoribonuclease II [Chlamydia trachomatis F/SW5]
gi|380250037|emb|CCE13565.1| exoribonuclease II [Chlamydia trachomatis F/SW4]
gi|440527101|emb|CCP52585.1| exoribonuclease R [Chlamydia trachomatis D/SotonD1]
gi|440531565|emb|CCP57075.1| exoribonuclease R [Chlamydia trachomatis F/SotonF3]
Length = 694
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 149/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISRTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHFQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>gi|154490007|ref|ZP_02030268.1| hypothetical protein PARMER_00236 [Parabacteroides merdae ATCC
43184]
gi|423723010|ref|ZP_17697163.1| ribonuclease R [Parabacteroides merdae CL09T00C40]
gi|154089449|gb|EDN88493.1| ribonuclease R [Parabacteroides merdae ATCC 43184]
gi|409241840|gb|EKN34607.1| ribonuclease R [Parabacteroides merdae CL09T00C40]
Length = 726
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 122/446 (27%), Positives = 200/446 (44%), Gaps = 61/446 (13%)
Query: 79 ELVAIRKRLRVFAKVKVSSGE---LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPD 134
E++ ++RL + K++V+ G + EDK L N + L+ K D+ ++ + + P+
Sbjct: 156 EILESQRRL-ITGKLQVTRGFAFLITEDKTLANDIFIPKDKLKGGKSGDKAIVRITEWPE 214
Query: 135 GKKNWM--VYDQNGASCSIKPQQ----VTFVVP-----GVEKFDHKDISNFLQKAEDNLL 183
KN + V D G + + F +P VEK K IS+ + E+ +
Sbjct: 215 EAKNPLGEVVDILGTAGDNDAEMNAILAEFDLPYKYPANVEKAAEK-ISDAI--PEEEIA 271
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D + + ID +A + DDALSA +L +G +V +H+AD T Y++P SL D++A
Sbjct: 272 KREDFRGVTTFTIDPKDAKDFDDALSARKLDNGNWEVGVHIADVTYYVKPESLIDREAFS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E +V L+ + I + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPNEEKLCFSVIFELNKNAEIQQSHITRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPEDP 362
TYE A ++ E E + A +L+ R + GAI E + + E+
Sbjct: 392 RRFTYEEAQAVIETGEGEYKEEILALNGLAQKLRDRRFKDGAIAFDRYEVKFDI--DENG 449
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNN---LALPYR----GQPQSNID 414
+P + Y+++ + A +L+ E M+L +A + G N YR P+ D
Sbjct: 450 KP-LGTYIKESKE-ANKLIEEFMLLANRTVAEFIGKSKNKTKKTFVYRIHEQPDPEKLRD 507
Query: 415 VSAFAHL----------------------------PEGPVRSSAIVKIMRAAAIDFRKPV 446
SAF PE + + ++ M+ A +
Sbjct: 508 FSAFISRFGYKMRTEGTKTDISKGINKLLDSVQGKPEENLVETLAIRSMQKAHYT-TDNI 566
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY D++ H
Sbjct: 567 GHYGLAMDYYTHFTSPIRRYPDMMVH 592
>gi|320353092|ref|YP_004194431.1| ribonuclease II [Desulfobulbus propionicus DSM 2032]
gi|320121594|gb|ADW17140.1| ribonuclease II [Desulfobulbus propionicus DSM 2032]
Length = 667
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 140/302 (46%), Gaps = 31/302 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL L ID + DDA+ +R DG ++V IH+ D + Y+ P S +A +
Sbjct: 276 KRRDLRALDTLTIDGASTRDFDDAVHIVRKDDGHVEVGIHITDVSYYVPPKSPLFAEARE 335
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++ P PM P++L+++ SL QG++ ++ V L + G I S+ ++I+
Sbjct: 336 RSTSIYFPEGHIPMLPQELSLDLCSLIQGKIRPTISFLVTLTATGEIVHSSIVPAVIEVK 395
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
L+Y A +L +E + +L L+ Q R+ +GA+ + + I + + E
Sbjct: 396 RQLSYREADQL----IERDPDLAALNVVRQQLRQQRVDKGALLLSLPDVNIDIRDREH-- 449
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP----------QSNI 413
I +Y+ PA L+SE+MIL A+Y + +R QP Q+N+
Sbjct: 450 --IQVYLSPVDTPARNLISELMILANSLAASYMAAREAPGLFRSQPPPRRRIISGVQNNL 507
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
+ AH R P H LGL Y TSPIRR++DL +
Sbjct: 508 --ADIAHQRRFLARGELTA-----------HPKPHSGLGLNSYTTITSPIRRFLDLAMQH 554
Query: 474 QV 475
Q+
Sbjct: 555 QL 556
>gi|222530075|ref|YP_002573957.1| ribonuclease R [Caldicellulosiruptor bescii DSM 6725]
gi|222456922|gb|ACM61184.1| ribonuclease R [Caldicellulosiruptor bescii DSM 6725]
Length = 716
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 164/339 (48%), Gaps = 54/339 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL +L ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRNLTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVMMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIH 573
>gi|319647804|ref|ZP_08002022.1| rnr protein [Bacillus sp. BT1B_CT2]
gi|317390145|gb|EFV70954.1| rnr protein [Bacillus sp. BT1B_CT2]
Length = 576
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 54/338 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS D
Sbjct: 51 EKDLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEGSPID 110
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ ++++ G + E+ + S
Sbjct: 111 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMLINPQGQVVEHEIFQS 170
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEA-----------AALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ ELK EA AA+ R+++GA+D
Sbjct: 171 VIKTTERMTYSDVNKIL---VDDDEELKQKYEALVPMFKDMEDLAAILRGKRMERGAVDF 227
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 228 DFKEAKVLV----DEEGKAKDVVLRERSTAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 283
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ + V+ F ++ PE V S+ +++ M+
Sbjct: 284 HEDPDQEKLQRFLEFVTTFGYVVKGTAGSIHPKALQSVLEEVRDRPEEAVISTVMLRSMK 343
Query: 437 AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A D P G GL Y FTSPIRRY DL+ H
Sbjct: 344 QAKYD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 378
>gi|387790426|ref|YP_006255491.1| ribonuclease R [Solitalea canadensis DSM 3403]
gi|379653259|gb|AFD06315.1| ribonuclease R [Solitalea canadensis DSM 3403]
Length = 709
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 155/334 (46%), Gaps = 46/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R+D ++ + ID +A + DDA+S +L G ++ +H+AD + YI P ++
Sbjct: 247 TQEEIAKRRDFRNITTFTIDPIDAKDFDDAISFRKLDTGNYEIGVHIADVSHYILPDTIL 306
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A++RGTSV+L PM PE+L+ SLR E +T S V D +I
Sbjct: 307 DKEALERGTSVYLVDRVIPMLPERLSNGVCSLRPNE--EKLTFSAVFEIDEQANILSEWF 364
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I TYE A E+L E A EL +L++ A + R + GAI+ T E +
Sbjct: 365 GRTVINSDRRFTYEEAQEVLEGKSSEYADELLMLNKIAYVLRDQRYKTGAINFETTEVKF 424
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------- 395
++ P I +YV+++ D A +L+ + M+L +A +
Sbjct: 425 RLDETGKP---IGVYVKERKD-AHKLIEDFMLLANRKVAEFVAKMGPKKRSYTFVYRVHD 480
Query: 396 -------GSFNNLA--LPYRGQPQSNIDVSAFAHL--------PEGPVRSSAIVKIMRAA 438
F+ A Y+ +S+ ++S + E V + ++ M A
Sbjct: 481 APDETMLTKFSEFAARFGYKINMKSHKEISKSLNFLMDDVTGKKEQNVLTQLAIRAM-AK 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI K H L Y FTSPIRRY D+L+H
Sbjct: 540 AIYTTKKSSHYGLAFDYYTHFTSPIRRYPDVLSH 573
>gi|403235917|ref|ZP_10914503.1| ribonuclease R [Bacillus sp. 10403023]
Length = 780
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 54/333 (16%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DL + + ID +A +LDDA++ +L++G K+ +H+AD T Y+ GS DK+A
Sbjct: 249 NRRDLRNEVIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTHYVTEGSPIDKEASD 308
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
RGTS++L PM P +L+ SL + +T+S + D G + ++ + S+IK
Sbjct: 309 RGTSIYLVDRVIPMIPHRLSNGICSLNPK--VDRLTLSCEMEVDQNGVVVKHDIFQSVIK 366
Query: 302 PTYMLTYESATELLHLNLEEEAELKI-----------LSEAAALRLQWRLQQGAIDTATL 350
T +TY +L ++++ EL+ + + AA+ + R+++GAID
Sbjct: 367 TTERMTYSDVNSIL---VDKDEELRKRYEPLVPMFEDMEQLAAILREKRMKRGAIDFDFK 423
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P I V + RL+ E M+L E +A + + N+ YR
Sbjct: 424 EAKVLVNEEGAPYDI----VLRERSVGERLIEEFMLLANETVAEHFHWMNVPFIYRIHED 479
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + ++ F ++ PE V S+ +++ M+ A
Sbjct: 480 PNEEKLRRFLEFITNFGYIVRGSGNSIHPRALQEVIEAVQGKPEEMVVSTVMLRSMKQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + V H L Y FTSPIRRY DL+ H
Sbjct: 540 YD-PESVGHFGLSTDFYTHFTSPIRRYPDLIVH 571
>gi|46198862|ref|YP_004529.1| exoribonuclease II [Thermus thermophilus HB27]
gi|46196485|gb|AAS80902.1| exoribonuclease II [Thermus thermophilus HB27]
Length = 744
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 157/334 (47%), Gaps = 45/334 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPRG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTEDLEVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ LTY E+ E L EE A +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRLLLDLTQRMREKRLKEGALDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYR 406
E +++V + L++ QA+P R L+ E+M+L +A Y L +R
Sbjct: 394 GFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLFR 447
Query: 407 GQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D A A L PE PV + +++ +R A
Sbjct: 448 VHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L + Y+ FTSPIRRY DL+ H
Sbjct: 508 RYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVH 540
>gi|52081942|ref|YP_080733.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|404490822|ref|YP_006714928.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|423683941|ref|ZP_17658780.1| ribonuclease R [Bacillus licheniformis WX-02]
gi|52005153|gb|AAU25095.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52349828|gb|AAU42462.1| ribonuclease R [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|383440715|gb|EID48490.1| ribonuclease R [Bacillus licheniformis WX-02]
Length = 767
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 54/338 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS D
Sbjct: 242 EKDLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLKNGHYKLGVHIADVSHYVTEGSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ ++++ G + E+ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCEMLINPQGQVVEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEA-----------AALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ ELK EA AA+ R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDDDEELKQKYEALVPMFKDMEDLAAILRGKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DEEGKAKDVVLRERSTAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ + V+ F ++ PE V S+ +++ M+
Sbjct: 475 HEDPDQEKLQRFLEFVTTFGYVVKGTAGSIHPKALQSVLEEVRDRPEEAVISTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A D P G GL Y FTSPIRRY DL+ H
Sbjct: 535 QAKYD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|189346025|ref|YP_001942554.1| ribonuclease R [Chlorobium limicola DSM 245]
gi|189340172|gb|ACD89575.1| ribonuclease R [Chlorobium limicola DSM 245]
Length = 791
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/338 (28%), Positives = 153/338 (45%), Gaps = 48/338 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+D+L NR D+ V+ ID +A + DDALS L D ++ +H+AD + Y+ S
Sbjct: 315 TDDDLKNRLDIRDKNVFTIDPVDAKDFDDALSIETLDDNLYRIGVHIADVSHYVPENSPL 374
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++AMKR TSV+L PM P +L+ + SL G A +V + + G + E++
Sbjct: 375 DREAMKRATSVYLVDRVIPMLPSRLSEQVCSLNPGVDRMAFSVFITMTESGEVREHAFHK 434
Query: 298 SIIKPTYMLTYESATE-LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE E LL + AEL++L + + + R + G +D T E R ++
Sbjct: 435 TVIHSKRRYTYEDVQEILLKGEGDNAAELQLLEKISVQLREERFRHGGLDFETEEVRFRL 494
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSF-----NNLALPYR--G 407
+ +P +I + + + RL+ E M+L +A Y +F N + YR
Sbjct: 495 GSKGEPVEVI----KKERLSSHRLIEEFMLLANRKVAEYLTKTFRERKKNPQPVIYRVHD 550
Query: 408 QPQSNIDVSAFAHL-------------PEGPVRSSAIVK------------------IMR 436
PQ V A+ GP+ S+ ++ ++R
Sbjct: 551 APQQE-RVLVLANFVRKIGYTLKINREKTGPIVSAKALRQLLQQVHGSNVEFLVNELVLR 609
Query: 437 --AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ AI + H LG Y FTSPIRRY DL+ H
Sbjct: 610 CMSKAIYTDENTGHFGLGFEHYTHFTSPIRRYPDLIVH 647
>gi|311031851|ref|ZP_07709941.1| ribonuclease R [Bacillus sp. m3-13]
Length = 790
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 163/336 (48%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D
Sbjct: 245 EKDLGDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVTHYVTEGSPLD 304
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVS--VVLHSDGSIAEYSVD 296
+A +RGTS++L PM P +L+ SL N +T+S + +++ G + ++ +
Sbjct: 305 MEAQERGTSIYLVDRVIPMIPHRLSNGICSLNPK--VNRLTISCEMEINNAGEVVKHEIF 362
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDT 347
+S+IK T +TY ++L ++ +EE +++ E AA+ + R+ +GAID
Sbjct: 363 HSVIKTTERMTYSDVKKIL-VDKDEEVISRYESLVPMFQLMEELAAVLRKKRMTRGAIDF 421
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E+++ V P+ + V + A RL+ E M++ E +A + + N+ YR
Sbjct: 422 DFKESKVIVDEEGAPKDV----VLRERSVAERLIEEFMLVANETVAEHFHWMNVPFIYRV 477
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ ++ F ++ PE V S+ +++ M+
Sbjct: 478 HEDPKEEKLQRFFEFITNFGYVVKGKGNEIHPRALQEVIEAVQGKPEEMVVSTVMLRSMK 537
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D + + H L Y FTSPIRRY DL+ H
Sbjct: 538 QAKYD-EESLGHFGLSTEFYTHFTSPIRRYPDLIVH 572
>gi|423346443|ref|ZP_17324131.1| ribonuclease R [Parabacteroides merdae CL03T12C32]
gi|409220261|gb|EKN13217.1| ribonuclease R [Parabacteroides merdae CL03T12C32]
Length = 726
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 122/446 (27%), Positives = 200/446 (44%), Gaps = 61/446 (13%)
Query: 79 ELVAIRKRLRVFAKVKVSSGE---LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPD 134
E++ ++RL + K++V+ G + EDK L N + L+ K D+ ++ + + P+
Sbjct: 156 EILESQRRL-ITGKLQVTRGFAFLITEDKTLANDIFIPKDKLKGGKTGDKAIVRITEWPE 214
Query: 135 GKKNWM--VYDQNGASCSIKPQQ----VTFVVP-----GVEKFDHKDISNFLQKAEDNLL 183
KN + V D G + + F +P VEK K IS+ + E+ +
Sbjct: 215 EAKNPLGEVVDILGTAGDNNAEMNAILAEFDLPYKYPANVEKAAEK-ISDAI--PEEEIA 271
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D + + ID +A + DDALSA +L +G +V +H+AD T Y++P SL D++A
Sbjct: 272 KREDFRGVTTFTIDPKDAKDFDDALSARKLDNGNWEVGVHIADVTYYVKPESLIDREAFS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E +V L+ + I + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSVIFELNKNAEIQQSHITRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPEDP 362
TYE A ++ E E + A +L+ R + GAI E + + E+
Sbjct: 392 RRFTYEEAQAVIETGEGEYKEEILALNGLAQKLRDRRFKDGAIAFDRYEVKFDI--DENG 449
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNN---LALPYR----GQPQSNID 414
+P + Y+++ + A +L+ E M+L +A + G N YR P+ D
Sbjct: 450 KP-LGTYIKESKE-ANKLIEEFMLLANRTVAEFIGKSKNKTKKTFVYRIHEQPDPEKLRD 507
Query: 415 VSAFAHL----------------------------PEGPVRSSAIVKIMRAAAIDFRKPV 446
SAF PE + + ++ M+ A +
Sbjct: 508 FSAFISRFGYKMRTEGTKTDISKGINKLLDSVQGKPEENLVETLAIRSMQKAHYT-TDNI 566
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY D++ H
Sbjct: 567 GHYGLAMDYYTHFTSPIRRYPDMMVH 592
>gi|346225792|ref|ZP_08846934.1| ribonuclease R [Anaerophaga thermohalophila DSM 12881]
gi|346226965|ref|ZP_08848107.1| ribonuclease R [Anaerophaga thermohalophila DSM 12881]
Length = 720
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 148/331 (44%), Gaps = 47/331 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L++G +V IH+AD T Y+ P ++ DK+A R
Sbjct: 259 RRDFRKVTTFTIDPADAKDFDDALSLRKLKNGNWEVGIHIADVTHYVHPNTVIDKEAADR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM PE+L+ E SLR E + L +D + + V +II+
Sbjct: 319 ATSVYLVDRVVPMLPERLSNELCSLRPDEDKLCFSAVFELDNDARVLDSWVGRTIIRSDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + +ELK+L++ A + R +G+ID +E + ++ E+
Sbjct: 379 RFTYEEAQTVIETGEGDLNSELKVLNDLAQKLRKERFSKGSIDFERVEVKFEL--DENGN 436
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL------------ALPYRGQPQS 411
P+ + E A A +L+ E M+L +A N L YR +
Sbjct: 437 PLSVFFKE--AKEANKLIEEFMLLANRRVAEIIGQNELDGKNSAPGKNAKTFVYRIHDEP 494
Query: 412 N----------IDVSAFAHLPEG----------------PVRSSAIVKIM----RAAAID 441
N + F +P+G + IV+ + + A+
Sbjct: 495 NPEKYETFSKFVRKLGFEAMPKGHETIGHSLNRLLDEVQGKKHQNIVETLAIRTMSKAVY 554
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D++ H
Sbjct: 555 STHNIGHYGLGFKYYTHFTSPIRRYPDMMVH 585
>gi|340358012|ref|ZP_08680611.1| ribonuclease R [Sporosarcina newyorkensis 2681]
gi|339615633|gb|EGQ20305.1| ribonuclease R [Sporosarcina newyorkensis 2681]
Length = 797
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E++ RKDL + ID +A +LDDA++ ++ DG ++++H++D + Y+ S D
Sbjct: 244 EEDFFKRKDLRNDMTITIDGADAKDLDDAIALVKEDDGSYRLFVHISDVSYYVTENSPMD 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A RGTSV+L PM P +L+ SL GE +T + + +G + E+ + S
Sbjct: 304 AEAADRGTSVYLTDRVIPMLPHRLSNGICSLNPGEDRLTLTCEMKVDQNGKVVEHEIYPS 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+I Y +TY+ E++ EE ++ L +++ AA+ Q R +GAID
Sbjct: 364 VINSNYRMTYKDVYEIIDNQDEELSKKYEEIVPMLNDMAKLAAILRQKRQDRGAIDFDFK 423
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----R 406
E++I V E+ P + VE + R++ E M++ E +A + F+ L +P+
Sbjct: 424 ESKILV--DEEGWPTDVVIVERTV--SERMIEEFMLIANETVAEH--FHWLQVPFLYRIH 477
Query: 407 GQPQ-----------SNID------------------VSAFAHLPEGPVRSSAIVKIMRA 437
P+ +N V + LPE V S+ +++ M+
Sbjct: 478 EDPKEEKLQRFFEFLTNFGIVVKGTGNQVHPRALQEIVESIEGLPEESVISTMLLRSMQQ 537
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A F + + H L Y FT+PIRRY DL+ H
Sbjct: 538 AKY-FEESLGHFGLSTDYYTHFTAPIRRYPDLIVH 571
>gi|429764944|ref|ZP_19297251.1| ribonuclease R [Clostridium celatum DSM 1785]
gi|429187214|gb|EKY28131.1| ribonuclease R [Clostridium celatum DSM 1785]
Length = 751
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 158/327 (48%), Gaps = 49/327 (14%)
Query: 187 DLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGT 246
D+ +L++ ID ++A +LDDA+S +L +GR K+ +H+AD T Y++ + DK+A+KRGT
Sbjct: 247 DIRNLRMVTIDGEDAKDLDDAVSIEKLDNGRYKLGVHIADVTHYVKEKNPLDKEALKRGT 306
Query: 247 SVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYML 306
SV+L PM P KL+ SL A++ + + ++G + ++ + ++I+ + +
Sbjct: 307 SVYLIDRVIPMLPRKLSNGICSLNPKVDRLALSCFMTIDNNGKVCDHEIAETVIRTSERM 366
Query: 307 TYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
TY T++L N EE + K + E + R+++GAID E++I + N
Sbjct: 367 TYTDVTKILRDNDEELIKKYDYLVDDFKTMQELCLILRNKRMRRGAIDFDFEESKI-ILN 425
Query: 359 PEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN----- 412
E+ +PI I Y + + A R++ E M++C E IA + + NL YR +
Sbjct: 426 -ENGKPIDIKPY---EREIANRIIEEFMLVCNETIAEHMFWTNLPFVYRVHENPDEEKLQ 481
Query: 413 ------------IDVSAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+ V+ H E V S+ +++ M A P
Sbjct: 482 KFRDFIYNLGYTMKVTQDIHPRILQEVLEKVKGKKEETVVSTLLLRSMMKAKY---TPEC 538
Query: 448 HGVLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 539 SSHFGLAATYYCHFTSPIRRYPDLQIH 565
>gi|365121736|ref|ZP_09338651.1| ribonuclease R [Tannerella sp. 6_1_58FAA_CT1]
gi|363645023|gb|EHL84303.1| ribonuclease R [Tannerella sp. 6_1_58FAA_CT1]
Length = 717
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 161/356 (45%), Gaps = 45/356 (12%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS+ L E++L +R+D + + ID +A + DDALS +L +G +V +H+AD T Y
Sbjct: 248 ISDIL--TEEDLKDREDFRGITTFTIDPRDAKDFDDALSIRQLDNGNWEVGVHIADVTHY 305
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ PGS+ DK+A KR TSV+L T PM PE+L + SLR E + L+ +
Sbjct: 306 VTPGSVIDKEAYKRATSVYLVDRTIPMLPERLCNQICSLRPDEDKLCFSAIFELNEKSEV 365
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTAT 349
+ ++I+ TYE A E++ + +E+ L++ A + R +G+I+
Sbjct: 366 QHSHITRTVIRSDRRFTYEEAQEIIESGRGDYSSEILKLNDLAQKLRERRFSEGSINFDR 425
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALP 404
E + ++ P +++Y + + A +LV E M+L +A G+ A
Sbjct: 426 HEVKFEIDENGRP---LSVYFK-VSKEANKLVEEFMLLANRTVAESVGKVDGNRTAKAFV 481
Query: 405 YR------------------------------GQPQSNID--VSAFAHLPEGPVRSSAIV 432
YR GQ +I+ + + PE + + +
Sbjct: 482 YRVHDLPDPEKMNTMATFIRRFGYTLRTEGTKGQISRSINSLLDNIQNKPEENLIETVAI 541
Query: 433 KIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+ M A A K + H L Y FTSPIRRY D++ H + A SV A+
Sbjct: 542 RTM-AKATYSTKNIGHYGLAFDYYTHFTSPIRRYPDMMVHRLLEKYMAGGRSVNAK 596
>gi|333897318|ref|YP_004471192.1| ribonuclease R [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112583|gb|AEF17520.1| ribonuclease R [Thermoanaerobacterium xylanolyticum LX-11]
Length = 715
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 158/344 (45%), Gaps = 44/344 (12%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+ N +K + + + R DL HL + ID ++A +LDDA++ +L+ G +Y+ +AD
Sbjct: 227 KEAENIQEKISSEEITGRIDLRHLNIVTIDGEDAKDLDDAVAVEKLESGDYVLYVSIADV 286
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++ GS DK+A+ RG SV+ PM P +L+ SL E +TV + + +
Sbjct: 287 SHYVKEGSELDKEALNRGCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDKN 346
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWR 339
G++ ++ + SII+ +TY + ++L N E+ E + + A + L+ R
Sbjct: 347 GNVIDHDIFESIIRSKERMTYTNVYKILEENDEKLKERYKDLIEDFNNMRDLAKILLERR 406
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN 399
++G++D E +I V P I+ + + + A R++ E M++ E +A + +
Sbjct: 407 KRRGSVDFDFEEAKIIVDEKGKPIDIVKI----ERNVAHRIIEEFMLVANETVAEHMHWI 462
Query: 400 NLALPYRGQPQSNID----VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR-------- 447
N+ YR +++ + F H ++ +I A + K VR
Sbjct: 463 NVPFVYRVHEHPDMEKLMAFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQRVV 522
Query: 448 -------------------HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 523 ETLLLRSLKRARYSPEDLGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|385792058|ref|YP_005825034.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676204|gb|AEB27074.1| ribonuclease II family protein [Francisella cf. novicida Fx1]
Length = 618
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFTIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|424787810|ref|ZP_18214574.1| ribonuclease R [Streptococcus intermedius BA1]
gi|422113564|gb|EKU17302.1| ribonuclease R [Streptococcus intermedius BA1]
Length = 779
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + +++V
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTV 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
++IK T+ +TY +++ + E+ K ++E A+ R ++GA++
Sbjct: 360 TQTVIKTTFRMTYSDVNDIITGDKEKRTAFKTIVPSIEQMTELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P II Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGVAERMIESFMLVANETVAEHFARLNLPFLYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQSYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 536 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 572
>gi|423315862|ref|ZP_17293767.1| ribonuclease R [Bergeyella zoohelcum ATCC 43767]
gi|405585578|gb|EKB59402.1| ribonuclease R [Bergeyella zoohelcum ATCC 43767]
Length = 719
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 150/333 (45%), Gaps = 45/333 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS +L++G +V +H+AD + Y+ PG+L D
Sbjct: 256 EEEVKKRRDMRDVLTFTIDPKDAKDFDDALSIRQLKNGNWEVGVHIADVSHYVTPGTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TS++L PM PE L+ + SLR E + L+ I + +
Sbjct: 316 EEAYSRATSIYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDKAEIIKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ +L + A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLAEEILVLDKLAKILREDRVKKGAITFDRSEVRFHL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NLALPYR----- 406
E+ EP + +Y + D A L+ E M+L ++ Y S N L YR
Sbjct: 435 -DENNEP-VGVYFKTSKD-ANHLIEEFMLLANRKVSEYISINAKNEVTGLTFIYRVHDDP 491
Query: 407 ---------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAA 439
+ +N+ S E + + A+ + + A
Sbjct: 492 DPTKLEALRDFVATFGYKMNLSNSKKVAESMNNLLKSVKGKGEENMIETLAMRSM--SKA 549
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ P+ H LG Y FTSPIRRY DL+AH
Sbjct: 550 VYSTDPIGHYGLGFAYYTHFTSPIRRYPDLIAH 582
>gi|218258472|ref|ZP_03474839.1| hypothetical protein PRABACTJOHN_00494 [Parabacteroides johnsonii
DSM 18315]
gi|423342570|ref|ZP_17320284.1| ribonuclease R [Parabacteroides johnsonii CL02T12C29]
gi|218225444|gb|EEC98094.1| hypothetical protein PRABACTJOHN_00494 [Parabacteroides johnsonii
DSM 18315]
gi|409217487|gb|EKN10463.1| ribonuclease R [Parabacteroides johnsonii CL02T12C29]
Length = 726
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/446 (26%), Positives = 199/446 (44%), Gaps = 61/446 (13%)
Query: 79 ELVAIRKRLRVFAKVKVSSGE---LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPD 134
E++ +RL + K++V+ G + EDK L N + L+ K D+ ++ + + P+
Sbjct: 156 EILESERRL-ITGKLQVTKGFAFLITEDKTLANDIFIPKDKLKGGKTGDKAIVRITEWPE 214
Query: 135 GKKNWM--VYDQNGASCSIKPQQ----VTFVVP-----GVEKFDHKDISNFLQKAEDNLL 183
KN + V D G + + F +P VEK K IS + E+ +
Sbjct: 215 EAKNPLGEVVDILGTAGENNAEMNAILAEFNLPYKYPVNVEKAAEK-ISEAI--PEEEIA 271
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D + + ID +A + DDALSA +L +G +V +H+AD T Y++P SL D++A
Sbjct: 272 KREDFRGITTFTIDPKDAKDFDDALSARKLDNGNWEVGVHIADVTYYVKPESLIDREAFS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+ D + + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNKDAEVQQSHITRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPEDP 362
TYE A ++ + E ++ + A +L+ R + GAI E + + E+
Sbjct: 392 RRFTYEEAQVVIETGEGDYKEEILMLNSMAQKLRDRRFKDGAIAFDRYEVKFDI--DENG 449
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNNL---ALPYR----GQPQSNID 414
+P + Y+++ + A +L+ E M+L +A + G N YR P+ D
Sbjct: 450 KP-LGTYIKESKE-ANKLIEEFMLLANRTVAEFVGKSKNRTKKTFVYRIHEQPDPEKLRD 507
Query: 415 VSAFAHL----------------------------PEGPVRSSAIVKIMRAAAIDFRKPV 446
SAF PE + + ++ M+ A +
Sbjct: 508 FSAFISRFGYKMRTEGTKTDISKGINKLLDNVQGKPEENLVETLAIRSMQKAHYT-TDNI 566
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY D++ H
Sbjct: 567 GHYGLAMDYYTHFTSPIRRYPDMMVH 592
>gi|311069884|ref|YP_003974807.1| ribonuclease R [Bacillus atrophaeus 1942]
gi|419821746|ref|ZP_14345337.1| ribonuclease R [Bacillus atrophaeus C89]
gi|310870401|gb|ADP33876.1| ribonuclease R [Bacillus atrophaeus 1942]
gi|388474053|gb|EIM10785.1| ribonuclease R [Bacillus atrophaeus C89]
Length = 779
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 56/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQIIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++ G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINKQGQVVEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSE------------AAALRLQWRLQQGAID 346
+IK T +TY ++L ++++ ELK E A LR + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVKKIL---VDDDEELKTKYEQLVPMFKDMEKLAEILRGK-RMERGAVD 417
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V D + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 418 FDFKEAKVLV----DEDGAAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYR 473
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
+ N + V+ F ++ PE V S+ +++ M
Sbjct: 474 IHEEPNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVVSTVMLRSM 533
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A D P G GL Y FTSPIRRY DL+ H
Sbjct: 534 KQAKYD---PESLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|423214392|ref|ZP_17200920.1| ribonuclease R [Bacteroides xylanisolvens CL03T12C04]
gi|392692807|gb|EIY86043.1| ribonuclease R [Bacteroides xylanisolvens CL03T12C04]
Length = 718
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEFVGKVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|375091522|ref|ZP_09737812.1| ribonuclease R [Helcococcus kunzii ATCC 51366]
gi|374563385|gb|EHR34704.1| ribonuclease R [Helcococcus kunzii ATCC 51366]
Length = 641
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/401 (27%), Positives = 173/401 (43%), Gaps = 59/401 (14%)
Query: 120 KDSDRVLLAV------AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
K+ D+V++ + + P G+ ++ + N I T+ +P +D + +
Sbjct: 108 KNHDKVVVEILFFDRKDKNPTGRVVEVLGNTNDTGIQILAIAKTYELPDEFSYDTLNYAR 167
Query: 174 FLQKAED--NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
L D + NR+D L ID +A + DDA+S + D I +Y+H+AD Y+
Sbjct: 168 SLPDVPDKKDFANREDFRDLFTVTIDGADAKDFDDAISIEKKDDKYI-LYVHIADVAHYV 226
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
S + DA +RG SV+L PM PE+L+ SL VTV +V G+I
Sbjct: 227 TENSAINDDAYERGNSVYLLDRVIPMLPEELSNSLCSLNPNVDRLTVTVKMVFDKKGNIN 286
Query: 292 EYSVDNSIIKPTYMLTYESATELLH--LNLEEEAE----LKILSEAAALRLQWRLQQGAI 345
+Y SII+ Y L YE+ ++LL N+ ++ E L ++E A+ + R +GA+
Sbjct: 287 DYYFYESIIRSNYRLVYENVSDLLEGKENIYKDDELIESLSNMNELHAILEEKRKIKGAL 346
Query: 346 DTATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
D E++I K P D + ED+ A +L+ M++ E + G F N+
Sbjct: 347 DFDFKESKIILDKYGTPIDIK-------EDERRVANKLIESFMVVTNEVVG--GHFANMD 397
Query: 403 LPY---------------------------RGQPQSNIDVSAFAHLPEGPVRSSAIVKI- 434
+P+ +GQ D EG S I I
Sbjct: 398 VPFIYRVHEAPSEDKVEEFRSVIAKFGLQIKGQQLYPKDFQKILEDVEGTTLSFLISNIM 457
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
MR A R+P H L Y FT+PIRRY DL+ H
Sbjct: 458 LRTMRKAEYK-REPNIHFGLATENYSHFTAPIRRYSDLVVH 497
>gi|254876038|ref|ZP_05248748.1| ribonuclease II [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842059|gb|EET20473.1| ribonuclease II [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 624
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 152/295 (51%), Gaps = 25/295 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RVDLTHLTAYAIDDEGSNDPDDAISWDAQQN---KMWVHIADPSSSISFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V L G I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRLDESGDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E +++ E ++++ ++ + RL +GA++ E +I + N ++ +
Sbjct: 353 RYSYEFVEE--NISALELGDIEVYTKYFTDK---RLAKGAVELDFPEIKISLDNDKNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ +++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLEQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ+
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQL 511
>gi|218781476|ref|YP_002432794.1| exoribonuclease II [Desulfatibacillum alkenivorans AK-01]
gi|218762860|gb|ACL05326.1| Exoribonuclease II [Desulfatibacillum alkenivorans AK-01]
Length = 669
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 145/292 (49%), Gaps = 12/292 (4%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D T L V ID + DDALS + + +V IH++D + Y+E GSL D++A
Sbjct: 279 QRRDFTGLPVLTIDGQATLDYDDALS-LEMDGDYFRVGIHISDVSHYVERGSLLDQEAFA 337
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R +S+++P PMFP LA +SL+ +V A++V V L D + +Y + S+++
Sbjct: 338 RSSSIYMPDDKIPMFPPLLAEGLLSLKADQVRPAISVMVRLDRDAVVLDYEICPSLVRVR 397
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY +++ +++ E+ LS A + RL GA+ + E I + D E
Sbjct: 398 RQLTYHE----VNMMADDDKEIIALSGLAEKLREKRLDDGAVLISLPEINIWL----DEE 449
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ L+ ++ + LVSE MIL +A++ + + +R QP+ +
Sbjct: 450 KNVTLHKVNRESRSRILVSEFMILANRLMASFLADHGSPAVFRAQPEPRL---RLFDRDN 506
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G + + + + + I KP H LG+ YV TSPIR+Y DL Q+
Sbjct: 507 GTLYQNWMQRRHLSRFILCPKPEPHSGLGVDAYVTATSPIRKYFDLAVQRQI 558
>gi|110803809|ref|YP_698614.1| ribonuclease R [Clostridium perfringens SM101]
gi|110684310|gb|ABG87680.1| ribonuclease R [Clostridium perfringens SM101]
Length = 751
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/325 (29%), Positives = 151/325 (46%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ YS+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNYSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDKELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I++ ++A A R++ E M++C E IA Y + + YR + + +
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 415 ------------VSAFAHLPE------------GPVRSSAIVKIMRAAAIDFR-KPVRHG 449
+ F L E G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYLFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIH 566
>gi|390945305|ref|YP_006409066.1| RNAse R [Belliella baltica DSM 15883]
gi|390418733|gb|AFL86311.1| RNAse R [Belliella baltica DSM 15883]
Length = 733
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 158/342 (46%), Gaps = 52/342 (15%)
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
IS+ + K E + NRKD + + ID +A + DDA+S L +G ++ +H+AD T Y
Sbjct: 258 ISDEISKEE--IKNRKDFRGITTFTIDPADAKDFDDAISYRVLDNGNFEIGVHIADVTHY 315
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--G 288
++P + +K+A R TSV+L T PM PE+L+ SLR E + +T S V D
Sbjct: 316 VKPKTGLEKEAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENA 373
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-----ELKILSEAAALRLQWRLQQG 343
+ ++ + ++I YE A E N++ ++ EL L++ A + R +G
Sbjct: 374 DVVKHWIGRTVIHSDRRFAYEQAQE----NIDNQSGDFFEELTFLNDMAKKLRRRRFDKG 429
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA- 402
A++ T+E + ++ P + L+V+++ D +++ E M+L +A + N
Sbjct: 430 AVNFETVEVKFQLDEKGTP---LGLFVKERKD-IHKMIEEFMLLANRTVAEFIFDKNKGA 485
Query: 403 --LPYRGQPQSNID--------VSAFAH---LPEGPVRSSAIVKIMR------------- 436
YR +++ F H + EG S A+ ++M
Sbjct: 486 DTFVYRVHDHPDLERLETFSNFAKKFGHEIKVGEGNRISKALNQLMDEIQGKPEQNVLEQ 545
Query: 437 ------AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A AI +P H L Y FTSPIRRY D++ H
Sbjct: 546 LAIRSMAKAIYTVEPKGHFGLAFKHYTHFTSPIRRYPDMMVH 587
>gi|167626915|ref|YP_001677415.1| ribonuclease II family protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596916|gb|ABZ86914.1| ribonuclease II family protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 624
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 152/295 (51%), Gaps = 25/295 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RVDLTHLTAYAIDDEGSNDPDDAISWDAQQN---KMWVHIADPSSSISFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V L G I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRLDESGDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E +++ E ++++ ++ + RL +GA++ E +I + N ++ +
Sbjct: 353 RYSYEFVEE--NISALELGDIEVYTKYFTDK---RLAKGAVELDFPEIKISLDNDKNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ +++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLEQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ+
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQL 511
>gi|424828182|ref|ZP_18252923.1| ribonuclease R [Clostridium sporogenes PA 3679]
gi|365979665|gb|EHN15718.1| ribonuclease R [Clostridium sporogenes PA 3679]
Length = 719
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRRKDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHKVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKRRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|110596746|ref|ZP_01385036.1| VacB and RNase II family 3'-5' exoribonucleases:Ribonuclease R
[Chlorobium ferrooxidans DSM 13031]
gi|110341433|gb|EAT59893.1| VacB and RNase II family 3'-5' exoribonucleases:Ribonuclease R
[Chlorobium ferrooxidans DSM 13031]
Length = 807
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 52/356 (14%)
Query: 164 EKFDHKDISNFLQK-----AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
E FD K I +F E +L R D+ V+ ID +A + DDALS L+DG
Sbjct: 298 ETFD-KQIVDFASSIREGITEKDLEGRLDIRDKVVFTIDPVDAKDFDDALSVETLEDGLY 356
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
++ +H+AD + Y+ S D++A+KR TSV+L PM P +L+ E SL G A
Sbjct: 357 RIGVHIADVSHYVPENSPLDREALKRATSVYLVDRVIPMLPSRLSEEICSLNPGVDRMAF 416
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQ 337
+V + ++G + ++ ++I YE E+L + EL++L + L +
Sbjct: 417 SVFFTMTAEGEVRKHEFQKTVIHSKRRYAYEDVEEILKKGKGDYCDELQLLDRISVLLRE 476
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA---- 393
R + G +D T E R K+ + +P ++ + + RL+ E M+L +A
Sbjct: 477 KRFKHGGLDFETEEVRFKLGSKGEPLEVMR----KERLGSHRLIEEFMLLANRKVAEYLT 532
Query: 394 -TYGSFNNLALP--YR--GQPQSN--IDVSAFAHL----------PEGPVRSSA----IV 432
T+ A P YR G PQ I +S F EGP+ ++ ++
Sbjct: 533 RTFKENKKEAQPVIYRVHGSPQQEKVIILSNFVKRFGFDLKLNRGKEGPIVTAKALRQLL 592
Query: 433 KIMRAAAIDF----------RKPVR------HGVLGLPGYVQFTSPIRRYMDLLAH 472
+ ++ ++F K V H LG Y FTSPIRRY DL+ H
Sbjct: 593 QQVKGTNVEFLVSELVLRSMSKAVYTGDNLGHFGLGFEHYTHFTSPIRRYPDLIVH 648
>gi|406672651|ref|ZP_11079876.1| ribonuclease R [Bergeyella zoohelcum CCUG 30536]
gi|405587195|gb|EKB60923.1| ribonuclease R [Bergeyella zoohelcum CCUG 30536]
Length = 719
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 150/333 (45%), Gaps = 45/333 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ PG+L D
Sbjct: 256 EEEVKKRRDMRDVLTFTIDPKDAKDFDDALSIRQLKNGNWEIGVHIADVSHYVTPGTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TS++L PM PE L+ + SLR E + L+ I + +
Sbjct: 316 EEAYSRATSIYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDKAEIIKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ +L + A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLAEEILVLDKLAKILREDRVKKGAITFDRSEVRFHL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NLALPYR----- 406
E+ EP + +Y + D A L+ E M+L ++ Y S N L YR
Sbjct: 435 -DENNEP-VGVYFKTSKD-ANHLIEEFMLLANRKVSEYISINAKNEVTGLTFIYRVHDDP 491
Query: 407 ---------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAA 439
+ +N+ S E + + A+ + + A
Sbjct: 492 DPTKLEALRDFVATFGYKMNLSNSKKVAESMNNLLKSVKGKGEENMIETLAMRSM--SKA 549
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ P+ H LG Y FTSPIRRY DL+AH
Sbjct: 550 VYSTDPIGHYGLGFAYYTHFTSPIRRYPDLIAH 582
>gi|409386984|ref|ZP_11239297.1| 3'-to-5' exoribonuclease RNase R [Lactococcus raffinolactis 4877]
gi|399205835|emb|CCK20212.1| 3'-to-5' exoribonuclease RNase R [Lactococcus raffinolactis 4877]
Length = 767
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 154/336 (45%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +++ R D + + ID +A +LDDA+ L +G I++ +H+AD + Y+ GS D
Sbjct: 253 EKDIIGRVDYRNEITFTIDGADAKDLDDAVHIKALDNGNIELGVHIADVSYYVTEGSALD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
++A+ RGTS ++ PM PE+L+ SL G N T S V+ +SDG + Y +
Sbjct: 313 REALNRGTSTYVTDRVVPMLPERLSNGICSLNLG--VNRFTQSCVMEINSDGHVVNYQIS 370
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELKILSEAA-------ALRLQWRLQQGAIDTAT 349
S+IK T +TY E+L N E + +++E+ + L R ++G+ID T
Sbjct: 371 QSVIKTTERMTYSDVNEMLAGNQEFLDKFAVIAESVEQMAKLHEILLAMRARRGSIDFET 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I + V + M ++ M++ E +A SF LP+
Sbjct: 431 QEAKIIVDKLGKP---IEIQVRKRGTAEM-MIESFMLIANETVAR--SFATRELPFIYRV 484
Query: 406 -----------------------RGQPQS--NIDVSAF----AHLPEGPVRSSAIVKIMR 436
+G P+ + D+ F P V S+ +++ M+
Sbjct: 485 HEHPKADKLTRFIDFASVFGIPLKGTPEKMQSKDLQDFMLKIKGQPGEMVLSTMLLRSMQ 544
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D + H L Y FTSPIRRY DLL H
Sbjct: 545 QARYD-EDNLGHFGLAAEYYTHFTSPIRRYPDLLVH 579
>gi|229495883|ref|ZP_04389609.1| ribonuclease R [Porphyromonas endodontalis ATCC 35406]
gi|229317196|gb|EEN83103.1| ribonuclease R [Porphyromonas endodontalis ATCC 35406]
Length = 736
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 105/359 (29%), Positives = 156/359 (43%), Gaps = 71/359 (19%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + ID +A + DDALS +L+ G ++V +H+AD + Y+ PGS+ DK
Sbjct: 274 EEMAKREDFREVFTLTIDPADAKDFDDALSWRKLEGGLVEVGVHIADVSYYVTPGSVIDK 333
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R TS++L T PM PE+L + SLR E A + VL+ + Y + +I
Sbjct: 334 EAYDRATSIYLVDRTIPMLPERLCNDLCSLRPNEARLAFSCVFVLNEAAEVQSYRIGRTI 393
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKI-LSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
I+ YE A +++ ++AE+ + L A L + R QGAI+ ++ E + +
Sbjct: 394 IESNRRYAYEEAQQVIDTKEGDDAEVILSLHSLAQLLRKRRFAQGAINFSSQEVQFVLDA 453
Query: 359 PEDPEPIINLYVEDQADP---AMRLVSEMMILCGEAIAT-YGSFNNLALPYRGQPQSNID 414
P V+ A P A L+ E M+L +AT +G + Q SN D
Sbjct: 454 EGRP-------VDVMARPHGTANELIEEFMLLANRTVATEFG---------KKQRNSNGD 497
Query: 415 VSAFAH----LPEG-------------------PVRSSAIVKIMRA---AAIDFRKP--- 445
F + LP+G +SAI K + A A+ D KP
Sbjct: 498 AKTFIYRIHDLPDGDKLNQMGAFIRRFGYQFKNATEASAISKNLNAVIEASQD--KPEAT 555
Query: 446 -------------------VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSV 485
+ H L Y FTSPIRRY DLL H V A SV
Sbjct: 556 LIQTMAVRTMARAEYSTENIGHYGLAFEYYTHFTSPIRRYPDLLVHRLVARYMAGEGSV 614
>gi|193216723|ref|YP_001999965.1| VacB-like exoribonuclease II [Mycoplasma arthritidis 158L3-1]
gi|193002046|gb|ACF07261.1| VacB-like exoribonuclease II [Mycoplasma arthritidis 158L3-1]
Length = 718
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 41/324 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DLT L ID + + DDA+S +L++G K++IH+AD + Y++ G DK+A++
Sbjct: 265 NRVDLTSLLTVTIDGLDTKDFDDAISCSKLENGNYKLFIHIADVSHYVKEGDAIDKEALE 324
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTS++LP PM P L+ SL + +T+ + L + G V S+IK
Sbjct: 325 RGTSIYLPDKVIPMLPFALSNGICSLNPNVIRACLTLELELDNHGKNVSSKVYASLIKSD 384
Query: 304 YMLTYESATELLHLNLEEEAELK-ILSEAAALRLQWR---LQQGAIDTATLETRIKVANP 359
Y LTY + + +E E+ +LS A + R ++ G +D E +I + +
Sbjct: 385 YRLTYNEVNDFFNQKIEVPNEINNLLSRAREISKILRAKKIKDGYVDFEIEEPKIIMEDN 444
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT------------------------- 394
+ + +I + A +L+ + M+ E IA
Sbjct: 445 DIKDIVIR-----KDGEAEKLIEDFMVRANETIAEMMKELKIPSIYRIHDKPETLKLSAL 499
Query: 395 -----YGSFNNLALPYRGQPQS-NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ N+ +P+ G P+S I V+ + A+++ M+ A + H
Sbjct: 500 QELLGFVGMKNIQVPFDGSPKSFEIMVNKIKAIKLDDYLKMALLRTMQKAQYS-SNNIGH 558
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAH 472
L Y FTSPIRRY DLL H
Sbjct: 559 FGLASSAYSHFTSPIRRYPDLLLH 582
>gi|339640975|ref|ZP_08662419.1| ribonuclease R [Streptococcus sp. oral taxon 056 str. F0418]
gi|339454244|gb|EGP66859.1| ribonuclease R [Streptococcus sp. oral taxon 056 str. F0418]
Length = 782
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 158/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TERDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++S+
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHSI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ +IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|257126741|ref|YP_003164855.1| ribonuclease R [Leptotrichia buccalis C-1013-b]
gi|257050680|gb|ACV39864.1| ribonuclease R [Leptotrichia buccalis C-1013-b]
Length = 761
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/343 (27%), Positives = 151/343 (44%), Gaps = 55/343 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L NRKDL HL + ID +A +LDDA+ + +DG K+++ +AD + Y+ + D
Sbjct: 282 DELKNRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIADVSYYVRENTELDM 340
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
DA+KRG S++L PM P KL+ SL E TV + L G + + S+
Sbjct: 341 DALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKRGKVVKNDFYKSV 400
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILS--------------EAAALRLQWRLQQGAI 345
IK Y +TYE+ +L N EE E K+L E + + + ++G+I
Sbjct: 401 IKSKYRMTYENVNTILEKN-EESEEYKVLYDKYRKIDEMLKNMLELSKIIRNNKKRRGSI 459
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E ++ + D + V A R++ + M++ E +A + + Y
Sbjct: 460 DFELPEIKVVL----DENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLFWEEIPAIY 515
Query: 406 R--------------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVK 433
R G+ Q+ I+ + LPEG + I++
Sbjct: 516 RVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERT--TGLPEGYLIHKLILR 573
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
M+ A K + H L Y+ FTSPIRRY DL+ H +G
Sbjct: 574 AMQRARY-ANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLG 615
>gi|410459051|ref|ZP_11312805.1| ribonuclease R [Bacillus azotoformans LMG 9581]
gi|409930757|gb|EKN67752.1| ribonuclease R [Bacillus azotoformans LMG 9581]
Length = 784
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 44/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L NR+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ GS DK
Sbjct: 242 DELTNRRDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSYYVTEGSAIDK 301
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A RGTS++L PM P +L+ SL ++ + ++S+G + + + S+
Sbjct: 302 EAFNRGTSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTMSCEMEINSNGEVVSHEIFQSV 361
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLE 351
IK T +TY +++ E E ++ E A + + R ++GAID E
Sbjct: 362 IKTTERMTYSDVNKIIDDKDPELLEKYKPLVPMFLLMDELAEILRKKRFERGAIDFDFKE 421
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
++ V P +I + +++ RL+ + M++ E +A + + NL YR
Sbjct: 422 AKVLVDEYGKPTDVI---IRERS-SGERLIEDFMLIANETVAEHFHWMNLPFIYRVHEDP 477
Query: 412 NID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAI 440
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 478 KEEKLSRFFEFITNFGYVVKGTANDVHPRALQQILEEVRGTPEEMVISTVMLRSMKQARY 537
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY DL+ H
Sbjct: 538 D-AESLGHFGLSAEFYTHFTSPIRRYPDLIVH 568
>gi|78188726|ref|YP_379064.1| ribonuclease R [Chlorobium chlorochromatii CaD3]
gi|78170925|gb|ABB28021.1| RNAse R [Chlorobium chlorochromatii CaD3]
Length = 794
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ +R D+ V+ ID +A + DDALS L+DG +V +H+AD + Y++ S
Sbjct: 316 SEADIKDRLDIRDKVVFTIDPIDAKDFDDALSVEMLEDGLCRVGVHIADVSHYVQENSPL 375
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A KR TSV+L PM P +L+ + SL G A ++ L + + Y
Sbjct: 376 DREAQKRATSVYLVDRVIPMLPARLSEQICSLNPGVDRMAYSIFFTLTPEAEVRNYEFHK 435
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE E+LH + EL++L + + + R + G +D T E R K+
Sbjct: 436 TVIHSKRRFTYEDVEEILHKGEGDYLQELQLLDRYSTILREKRFRDGGLDFETEEVRFKL 495
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALP--YR--G 407
+P +I + + + RL+ E M+L +A T+ LP YR G
Sbjct: 496 GKEGEPLEVI----KKERLGSHRLIEEFMLLANRKVAKHLTKTFRENRKTPLPVLYRVHG 551
Query: 408 QPQSN--IDVSAFAHL----------PEGPVRSS----AIVKIMRAAAIDF--------- 442
PQ + V+ F EG + S+ +++ ++ ++F
Sbjct: 552 SPQEEKVVMVANFVKRLGYDLKINRSKEGIIVSAQSLRQLLQQVKGTNVEFLVSELVLRC 611
Query: 443 -------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY DLL H
Sbjct: 612 MSKAVYTGDNIGHYGLGFEHYTHFTSPIRRYPDLLIH 648
>gi|390935129|ref|YP_006392634.1| ribonuclease R [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570630|gb|AFK87035.1| ribonuclease R [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 715
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 50/347 (14%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+ N +K + D + R DL HL + ID ++A +LDDA++ +L G +Y+ +AD
Sbjct: 227 KEAENIQEKISSDEISGRTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADV 286
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++ GS DK+A+ RG SV+ PM P +L+ SL E +TV + + +
Sbjct: 287 SHYVKEGSELDKEALNRGCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDRN 346
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK-----------ILSEAAALRL 336
G++ ++ + S+I+ +TY + ++L E + ELK + + A + L
Sbjct: 347 GNVVDHDIFESVIRSKERMTYTNVHKILE---ESDKELKERYKDLIEDFNNMKDLAKILL 403
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYG 396
+ R ++G++D E +I V P I+ + + + A R++ E M++ E +A +
Sbjct: 404 ERRKRRGSVDFDFEEAKIIVDEKGKPVDIVKV----ERNIAHRIIEEFMLVANETVAEHM 459
Query: 397 SFNNLALPYRGQPQSNID----VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR----- 447
+ N+ YR +++ + F H ++ +I A + K VR
Sbjct: 460 HWINVPFVYRVHEHPDMEKLMAFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQ 519
Query: 448 ----------------------HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 520 RVVETLLLRSLKRARYSPEDLGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|125718408|ref|YP_001035541.1| VacB/Rnb family exoribonuclease [Streptococcus sanguinis SK36]
gi|125498325|gb|ABN44991.1| Exoribonuclease, VacB/Rnb family, putative [Streptococcus sanguinis
SK36]
Length = 782
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 154/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DKDA+ R TSV++ PM PE+L+ SL + +T S ++ D G + + ++
Sbjct: 304 DKDALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKNTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|124003005|ref|ZP_01687856.1| ribonuclease R [Microscilla marina ATCC 23134]
gi|123991655|gb|EAY31063.1| ribonuclease R [Microscilla marina ATCC 23134]
Length = 736
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 143/327 (43%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + ID + A + DDALS +L +G ++ IH+AD T Y++P S DK+ +R
Sbjct: 274 RRDIRETLTFTIDPENAKDFDDALSIKKLDNGNWEIGIHIADVTHYVKPDSKVDKEGAER 333
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM PE+L+ E SLR E + L + + + ++I
Sbjct: 334 ATSVYLVDRVVPMLPERLSNELCSLRPHEDKLTFSAMFELDENAHVIKEWFGRTVIHSDR 393
Query: 305 MLTYESATELLHL-NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+YE A E++ N + EL+ L+ A R ++GA+ T+E + K+ P
Sbjct: 394 RFSYEEAQEVMDSGNGDHVDELRTLNALAKKLTAQRFEKGAMSFETVEVKFKLDENGTP- 452
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY--------GSFNNLALPYRGQPQSNI-- 413
I LY +++ D A +L+ E M+L +A + + + YR N+
Sbjct: 453 --IGLYTKERKD-AHKLIEEFMLLANRKVAEFVFKLPVKGTKAESNTMVYRTHDDPNVEK 509
Query: 414 --DVSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDFRKP 445
+ S FA P+ V ++ M A AI +
Sbjct: 510 LKNFSGFAKKLGHEVKLNGKAMTRSLNKLMTDIEDTPQQNVLQGLAIRTM-AKAIYTTEA 568
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++ H
Sbjct: 569 TGHFGLAFDHYTHFTSPIRRYPDMMVH 595
>gi|302872504|ref|YP_003841140.1| ribonuclease R [Caldicellulosiruptor obsidiansis OB47]
gi|302575363|gb|ADL43154.1| ribonuclease R [Caldicellulosiruptor obsidiansis OB47]
Length = 732
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 55/349 (15%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I N + +++L R DL + ++ ID ++A + DDA+S +L +G + +H+AD
Sbjct: 251 KEIENIPDEVTQEDLEGRVDLRNWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADV 310
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++P + DK+A +RGTSV+L PM P KL+ SL + +T SV++ D
Sbjct: 311 SHYVKPNTHLDKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEID 368
Query: 288 --GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAAL 334
G++ ++ + S+I+ +TY + T++L EE+ E L+++ E A +
Sbjct: 369 KQGNVVKHDIFESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALI 425
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
+ R+++GA+D ET++ + P +I + + +++ E M++C E +A
Sbjct: 426 LREKRMKRGALDFDFDETKVILDKNGKPIDVIRY----ELTISNKIIEEFMLICNETVAN 481
Query: 395 YGSFNNLALPYRGQPQSNID-VSAFAHL------------------------------PE 423
+ + N+ YR + +I+ + FA PE
Sbjct: 482 HFYWLNVPFLYRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPE 541
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V + ++ ++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 542 ERVIHTLCLRSLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIH 589
>gi|401681512|ref|ZP_10813412.1| ribonuclease R [Streptococcus sp. AS14]
gi|400186282|gb|EJO20495.1| ribonuclease R [Streptococcus sp. AS14]
Length = 782
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEVIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSNYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHII 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEEVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|337754143|ref|YP_004646654.1| RNase R-like protein [Francisella sp. TX077308]
gi|336445748|gb|AEI35054.1| RNase R-related protein [Francisella sp. TX077308]
Length = 624
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 151/295 (51%), Gaps = 25/295 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RADLTHLTAYAIDDEGSNDPDDAISWDAQQN---KMWVHIADPSSSISFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V + G I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRIDESGDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E + NLE E++I ++ + RL +GA++ E +I + N ++ +
Sbjct: 353 RYSYEFVEENIS-NLEL-GEIEIYAKYFTDK---RLAKGAVELDFPEIKILLDNDKNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ ++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLKQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ+
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQL 511
>gi|125972670|ref|YP_001036580.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
gi|281416859|ref|ZP_06247879.1| ribonuclease R [Clostridium thermocellum JW20]
gi|125712895|gb|ABN51387.1| ribonuclease R [Clostridium thermocellum ATCC 27405]
gi|281408261|gb|EFB38519.1| ribonuclease R [Clostridium thermocellum JW20]
Length = 757
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED + R+DL L + ID ++A +LDDA+S RL +G ++ +H+AD + Y++ GS
Sbjct: 239 TEDMIKGRRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPL 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KRGTSV+L PMFP++L+ SL A TV + + G + ++ +
Sbjct: 299 DKEALKRGTSVYLVDRVIPMFPKELSNGICSLNPKVDRLAFTVMMEIDKSGRVVDHEIFE 358
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I +TY ++L N E E + E A + + R+ +GAID
Sbjct: 359 SVINVNERMTYTDVYKILEENDEGLIERYKYLCDTFHTMKELALILRKKRMDRGAIDFNF 418
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + E PI + Y + A ++ E M++C E +A + + N YR
Sbjct: 419 DEAKIVL--DEKGVPIEVKRY---EMTIANNIIEEFMLVCNETVAEHFFWTNTPFVYRIH 473
Query: 409 PQSNID----VSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ D S F H E + S+ +++ ++ A
Sbjct: 474 EDPDPDKIEAFSEFVHNLGYTLKGINKIHPKALQDVLEKARGTKEETIISTVMLRSLQKA 533
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ G GL Y FTSPIRRY DL+ H
Sbjct: 534 RYSH---INSGHFGLAAKYYCHFTSPIRRYPDLIIH 566
>gi|422820841|ref|ZP_16869034.1| ribonuclease R [Streptococcus sanguinis SK353]
gi|324991459|gb|EGC23392.1| ribonuclease R [Streptococcus sanguinis SK353]
Length = 782
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHAI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M+ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLAANETVAEHFTKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGVRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|345303465|ref|YP_004825367.1| ribonuclease R [Rhodothermus marinus SG0.5JP17-172]
gi|345112698|gb|AEN73530.1| ribonuclease R [Rhodothermus marinus SG0.5JP17-172]
Length = 751
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 40/316 (12%)
Query: 192 KVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
+V+ ID +A + DDAL RL +G I+V +H+AD + Y+ PGS D++A +RGTSV+L
Sbjct: 276 EVFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEAYQRGTSVYLV 335
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
PM PEKL+ + SLR GE +V + L + Y + ++I TYE A
Sbjct: 336 DRVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIHSRQRFTYEEA 395
Query: 312 TELLHLNLEEEAELKILSEAAALRLQW-RLQQGAIDTATLETRIKVANPEDPEPIINLYV 370
++ AE L+ A +L+ R++ GAID E ++++ +P I +Y
Sbjct: 396 QAIIDGTDHPLAEPVRLAHELAQKLRRARMEAGAIDFDLPEVKVELDEAGNP---IRIYR 452
Query: 371 EDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL--------- 421
+++ A +L+ E M+L +A A P+ + D L
Sbjct: 453 KERL-AAHQLIEEFMLLANRLVAETIGKRAEAPPFVYRIHDRPDAEKIRQLAQYVRVFGY 511
Query: 422 -------------------------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGY 456
PE PV A ++ M A + + H L Y
Sbjct: 512 HLELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQN-IGHYGLAFDFY 570
Query: 457 VQFTSPIRRYMDLLAH 472
FTSPIRRY DL+ H
Sbjct: 571 THFTSPIRRYPDLMVH 586
>gi|422870496|ref|ZP_16916989.1| ribonuclease R [Streptococcus sanguinis SK1087]
gi|328946711|gb|EGG40849.1| ribonuclease R [Streptococcus sanguinis SK1087]
Length = 782
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 158/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLARRLDLREEIIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|46446682|ref|YP_008047.1| ribonuclease R [Candidatus Protochlamydia amoebophila UWE25]
gi|46400323|emb|CAF23772.1| putative ribonuclease R [Candidatus Protochlamydia amoebophila
UWE25]
Length = 775
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 154/325 (47%), Gaps = 35/325 (10%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ NR+DL L ID D A + DDALS R +G + +H+AD + Y++PG+
Sbjct: 270 SKKDIQNREDLRELISLTIDPDTAKDFDDALSLTRDAEGIYNLAVHIADVSHYVQPGTAL 329
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R S + P PM P L+ SLR AV+V + + S G++ +Y
Sbjct: 330 DEEAKARCNSTYFPGYCVPMLPGALSENLCSLRPNVNRLAVSVLMRIDSSGNLLDYRFTR 389
Query: 298 SIIKPTYMLTYESATELL--HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK TY+ A ++L N + L+++ E L Q R ++G+I+ + E I
Sbjct: 390 SVIKSAKRFTYKEAKKVLDGQKNSPYKPHLELMVELCRLLKQKRYERGSIEFSLPELVIL 449
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP-QSN 412
V E +P Y+ D ++V E M+ E +A S L YR +P + N
Sbjct: 450 V--DEKGKPYSTEYI--TYDITHQMVEEFMLKANEIVAWDLSQKGKNLTYRIHDEPSEEN 505
Query: 413 I-DVSAFA-----HLPEGPV-------------------RSSAIVKIMRAAAIDFRKPVR 447
+ D S A LP+ P +S+ ++ MR AA + +
Sbjct: 506 LRDFSTLAAAFGFKLPDLPTPQDLQKLFEKAAETAYSNYLASSYIRRMRLAAYS-AENIG 564
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY+DL+ H
Sbjct: 565 HYGLSLTHYCHFTSPIRRYVDLVVH 589
>gi|312864638|ref|ZP_07724869.1| ribonuclease R [Streptococcus downei F0415]
gi|311099765|gb|EFQ57978.1| ribonuclease R [Streptococcus downei F0415]
Length = 800
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 157/340 (46%), Gaps = 51/340 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + +R DL + ID EA +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 246 SESDFEDRLDLRDEITFTIDGKEAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 305
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
DK+A+ RGTSV++ PM PE+L+ SL + +T S ++ + G + ++++
Sbjct: 306 DKEAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEINPQGKVVKHTI 363
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY+ ++L N E ++ K ++E + ++ R+++GA+D
Sbjct: 364 TQTVIKTSFRMTYDDVNQMLAGNQEVISQFKPIMDSVNAMAELHKILVEMRIKRGALDFD 423
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
E RI V + P ++ V D+ A R++ M+ E +A + + L YR
Sbjct: 424 RPEARILVDDKGLPTDVV---VRDRG-TAERMIESFMLAANECVAEHFAKRKLPFIYRIH 479
Query: 407 -----------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRA 437
GQ ++ A P V S +++ M+
Sbjct: 480 ETPKAEKLQKFIDYASLFGVPIYGTANSLGQKALQEFMAQIAGQPGHEVMSMMLLRSMQQ 539
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
A HG GL Y FTSPIRRY DLL H V
Sbjct: 540 ARY---SEDNHGHYGLAADYYTHFTSPIRRYPDLLVHRMV 576
>gi|239828270|ref|YP_002950894.1| ribonuclease R [Geobacillus sp. WCH70]
gi|239808563|gb|ACS25628.1| ribonuclease R [Geobacillus sp. WCH70]
Length = 762
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 158/335 (47%), Gaps = 46/335 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYEPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M++ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLVANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE V S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMVISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D +G L Y FTSPIRRY DL+ H
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVH 568
>gi|206603225|gb|EDZ39705.1| Exoribonuclease II [Leptospirillum sp. Group II '5-way CG']
Length = 744
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 146/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL HL++ ID D A + DDALS + DG ++ IH+AD Y+ PGS DK+A +
Sbjct: 252 NRVDLRHLEIMTIDGDRARDFDDALSVVESPDGTFQIGIHIADVAAYVLPGSELDKEAFR 311
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ P PMFPE L+ +SL E A TV V + G + E S+ S+I+
Sbjct: 312 RGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVIRSR 371
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW---------RLQQGAIDTATLETRI 354
TY +L + E K + LR W R Q G++D E I
Sbjct: 372 LRATYSRVHPILAGESTDSPESKF---SVQLRSLWTLAKKLRDERFQNGSLDFDLPEPEI 428
Query: 355 KVANPEDPEPIIN--LYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----GQ 408
+ +P II Y+ + LV E M+L +A + YR
Sbjct: 429 VLDLRGEPVDIIRSPRYL------SHFLVEEFMLLANRIVAAELTRRFSMAMYRVHETPS 482
Query: 409 PQSNIDVSAF-----AHLP---EGPVRSS--------------------AIVKIMRAAAI 440
P+ + F +P EG +R+S ++++ ++ A
Sbjct: 483 PEKTESLGIFLGALGISIPKRKEGRMRASDLSAVLESTRGTPLEKMVHFSVLRSLKQARY 542
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D P+ H L + Y FTSPIRRY DL+ H
Sbjct: 543 DV-YPLGHFGLAMDDYTHFTSPIRRYPDLIVH 573
>gi|422851224|ref|ZP_16897894.1| ribonuclease R [Streptococcus sanguinis SK150]
gi|325694812|gb|EGD36717.1| ribonuclease R [Streptococcus sanguinis SK150]
Length = 782
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|118496748|ref|YP_897798.1| ribonuclease II family protein [Francisella novicida U112]
gi|194324055|ref|ZP_03057830.1| ribonuclease II family protein [Francisella novicida FTE]
gi|118422654|gb|ABK89044.1| ribonuclease II family protein [Francisella novicida U112]
gi|194321952|gb|EDX19435.1| ribonuclease II family protein [Francisella tularensis subsp.
novicida FTE]
Length = 618
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEIDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|208779981|ref|ZP_03247324.1| ribonuclease II family protein [Francisella novicida FTG]
gi|208743985|gb|EDZ90286.1| ribonuclease II family protein [Francisella novicida FTG]
Length = 618
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEIDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDKQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|262341063|ref|YP_003283918.1| ribonuclease R [Blattabacterium sp. (Blattella germanica) str. Bge]
gi|262272400|gb|ACY40308.1| ribonuclease R [Blattabacterium sp. (Blattella germanica) str. Bge]
Length = 643
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 147/326 (45%), Gaps = 46/326 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ ++ + ID A + DDALS +L D ++ +H++D + Y+E GSL DK+A R
Sbjct: 175 RRDMRNINTFTIDPLNAKDFDDALSIRKLNDDIWEIGVHISDVSHYVEEGSLLDKEAYSR 234
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TS++ PM P+ L+ + SL+ E + + + S G I + +II+
Sbjct: 235 STSIYFVGKVIPMLPKILSNDLCSLQPKEDKLSFSYIFNIDSQGEILKSWFGKTIIRSNK 294
Query: 305 MLTYESATELLHLN----LEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
TYE +++ EE L LS+ + RL+ G+ID T+E + + +
Sbjct: 295 RFTYEEVQKIIDKKKGDFYEEIYTLFFLSKILTKK---RLKNGSIDLETVEVKFHLDEKK 351
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NLALPYRGQPQ---- 410
+P I+L++E D A RL+ E M+L I+ + S N N YR +
Sbjct: 352 NP---ISLHLEKNND-AHRLIEEFMLLANRKISEFVSLNFNGNPSNRLFIYRVHDKPDFQ 407
Query: 411 ------------------SNIDVSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPV 446
N+ S L PE + + I++ M A K +
Sbjct: 408 KIFLIKKIIEPLGYFLDFKNLKTSINCLLKKIKGKPEQNMIENLILRSMSKAKYS-TKNI 466
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++AH
Sbjct: 467 GHYGLSFFYYTHFTSPIRRYSDIIAH 492
>gi|387928704|ref|ZP_10131382.1| ribonuclease R [Bacillus methanolicus PB1]
gi|387588290|gb|EIJ80612.1| ribonuclease R [Bacillus methanolicus PB1]
Length = 773
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 54/338 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ G+ D
Sbjct: 244 ESEIANRRDLRDEMIVTIDGVDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVREGTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
++A +RGTSV+L PM P +L+ SL + +T+S ++ ++DG + + +
Sbjct: 304 REAGERGTSVYLVDRVIPMIPHRLSNGICSLNPK--VDRLTLSCIMEINADGEVVNHEIF 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE---------LKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY ++L ++ +EE +++ E A++ R+++GAID
Sbjct: 362 QSVIKTTERMTYHDVNKIL-VDKDEELRQRYEPLVPMFEMMEELASILRNKRMKRGAIDF 420
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V P + V + A RL+ E M+ E +A + + ++ YR
Sbjct: 421 DFKEAKVIVDEEGKPTDV----VIRERSVAERLIEEFMLAANETVAEHFHWLDVPFIYRI 476
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
D ++ F ++ PE V S+ +++ M+
Sbjct: 477 HEDPKEDKLRRFFEFITNFGYIVKGTANHVHPRALQEIIEEVQGKPEEMVVSTVMLRSMQ 536
Query: 437 AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A KP G GL Y FTSPIRRY DL+ H
Sbjct: 537 QAKY---KPENLGHFGLSTDFYTHFTSPIRRYPDLIVH 571
>gi|299144985|ref|ZP_07038053.1| ribonuclease R [Bacteroides sp. 3_1_23]
gi|298515476|gb|EFI39357.1| ribonuclease R [Bacteroides sp. 3_1_23]
Length = 718
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|407979537|ref|ZP_11160350.1| ribonuclease R [Bacillus sp. HYC-10]
gi|407413823|gb|EKF35503.1| ribonuclease R [Bacillus sp. HYC-10]
Length = 780
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 159/336 (47%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +V+ +G + ++ + S
Sbjct: 302 REAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDQNGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ EL + + + A + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDQDEELLDKYEPLVPMFQEMEKLAEILRDKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DDEGVAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ N + V+ F ++ PE V + +++ M+
Sbjct: 475 HEEPNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D + + H L Y FTSPIRRY DL+ H
Sbjct: 535 QAKYD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|153939819|ref|YP_001389595.1| ribonuclease R [Clostridium botulinum F str. Langeland]
gi|384460674|ref|YP_005673269.1| ribonuclease R [Clostridium botulinum F str. 230613]
gi|152935715|gb|ABS41213.1| ribonuclease R [Clostridium botulinum F str. Langeland]
gi|295317691|gb|ADF98068.1| ribonuclease R [Clostridium botulinum F str. 230613]
Length = 725
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 158/337 (46%), Gaps = 53/337 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E +I + E +PI I Y + A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIIL--DEKGKPIEIKPY---ERAIANRIIEEFMLVCNETIAEHMFWSNLPFVYRI 470
Query: 408 QPQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRA 437
+ + + F H E V S+ +++ ++
Sbjct: 471 HEDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQ 530
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A P G GL Y FTSPIRRY DL+ H
Sbjct: 531 ARY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|344997094|ref|YP_004799437.1| ribonuclease R [Caldicellulosiruptor lactoaceticus 6A]
gi|343965313|gb|AEM74460.1| ribonuclease R [Caldicellulosiruptor lactoaceticus 6A]
Length = 716
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 162/339 (47%), Gaps = 54/339 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ E L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTVSNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIH 573
>gi|304316667|ref|YP_003851812.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302778169|gb|ADL68728.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 719
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 149/327 (45%), Gaps = 43/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL HL + ID ++A +LDDA++ +L G +Y+ +AD + Y++ GS DK+A+ R
Sbjct: 244 RTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADVSHYVKEGSELDKEALNR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P +L+ SL E +TV + + +G++ ++ + S+I+
Sbjct: 304 GCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDKNGNVVDHDIFESVIRSKE 363
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + ++L N +E E + + A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKILEGNDDELKERYKDLVGDFNNMRDLAKILLERRKRRGSVDFDFEEAKVIV 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
P I+ + + + A R++ E M++ E +A + + N+ YR +++
Sbjct: 424 DENGKPTDIVKV----ERNIAHRIIEEFMLVANETVAEHMHWINVPFVYRVHEHPDMEKL 479
Query: 415 --VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR------------------------- 447
+ F H ++ +I A + K VR
Sbjct: 480 MAFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQRIVETLLLRSLKRARYSPED 539
Query: 448 --HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 540 LGHYALATQYYTHFTSPIRRYPDLIIH 566
>gi|404406212|ref|ZP_10997796.1| RNAse R [Alistipes sp. JC136]
Length = 746
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+D + + +D +A + DDALS +++DG ++ +H+AD T Y+ P S+ D +A
Sbjct: 256 IAERRDFRQVTTFTVDPADAKDFDDALSVRKIKDGVWEIGVHIADVTHYVRPHSVIDDEA 315
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
++RGTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 316 VERGTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIH 375
Query: 302 PTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
TY A E++ + AE L + A ALR + R + GAI E + ++
Sbjct: 376 SDRRFTYAEAQEIIETGRGDYAEEVLTLNRLAQALRAE-RFKNGAISFDREEVKFRLDEN 434
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYR---GQ 408
P + +Y ++Q + + +++ E M+L CG+ G + YR
Sbjct: 435 GKP---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRRTESGRTAERTMVYRVHDSP 490
Query: 409 PQSNID-----VSAFAHLPEGPVRSSAIVKIMR-----------------------AAAI 440
+ +D + F H+ + + A+ K M A A
Sbjct: 491 SEEKLDRFRQFILRFGHIFKA-TKGRAVAKEMNKLFKQIKGTTEENAVSTMAVRSMAKAY 549
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L P Y FTSPIRRY D++ H
Sbjct: 550 YTTDNIGHYGLAFPYYTHFTSPIRRYPDMMVH 581
>gi|268316759|ref|YP_003290478.1| ribonuclease R [Rhodothermus marinus DSM 4252]
gi|262334293|gb|ACY48090.1| ribonuclease R [Rhodothermus marinus DSM 4252]
Length = 751
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 140/315 (44%), Gaps = 40/315 (12%)
Query: 193 VYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPT 252
V+ ID +A + DDAL RL +G I+V +H+AD + Y+ PGS D++A +RGTSV+L
Sbjct: 277 VFTIDPSDAKDFDDALHLRRLPNGHIEVGVHIADVSYYVRPGSALDEEAYQRGTSVYLVD 336
Query: 253 ATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESAT 312
PM PEKL+ + SLR GE +V + L + Y + ++I TYE A
Sbjct: 337 RVIPMLPEKLSNQVCSLRPGEDKLTYSVLMELTPSARVVRYQIRETVIHSRQRFTYEEAQ 396
Query: 313 ELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVE 371
++ AE L+ A +L + R++ GAID E ++++ +P I +Y +
Sbjct: 397 AIIDGADHPLAEPVRLAHELAQKLRKARMEAGAIDFDLPEVKVELDEAGNP---IRIYRK 453
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL---------- 421
++ A +L+ E M+L +A A P+ + D L
Sbjct: 454 ERL-AAHQLIEEFMLLANRLVAETIGKRTEAPPFVYRIHDRPDAEKIRQLAQYVRVFGYH 512
Query: 422 ------------------------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYV 457
PE PV A ++ M A + + H L Y
Sbjct: 513 LELTEDGTVSSKALNELLQHVKGTPEEPVIEEAALRAMAKARYSTQN-IGHYGLAFDFYT 571
Query: 458 QFTSPIRRYMDLLAH 472
FTSPIRRY DL+ H
Sbjct: 572 HFTSPIRRYPDLMVH 586
>gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum
ATCC 824]
gi|337735931|ref|YP_004635378.1| bifunctional ribonuclease/ribosomal protein S1 [Clostridium
acetobutylicum DSM 1731]
gi|384457440|ref|YP_005669860.1| FUSION ribonuclease and ribosomal protein S1 domain protein
[Clostridium acetobutylicum EA 2018]
gi|15023595|gb|AAK78692.1|AE007586_9 FUSION ribonuclease and ribosomal protein S1 domain [Clostridium
acetobutylicum ATCC 824]
gi|325508129|gb|ADZ19765.1| FUSION ribonuclease and ribosomal protein S1 domain protein
[Clostridium acetobutylicum EA 2018]
gi|336292941|gb|AEI34075.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum
DSM 1731]
Length = 730
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ +K+ ID ++A +LDDA+S +L +G K+ +H+AD + Y+ + DK+A+KR
Sbjct: 244 RRDIRDVKMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVSNYVREDNPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL + A++ + + G + ++ + SIIK
Sbjct: 304 ATSVYLIDRVIPMLPKKLSNGICSLNPRQDRLAMSCFMEIDPTGKVIQHEIFESIIKTNE 363
Query: 305 MLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETRI-- 354
+TY T++L + EE + K + E A++ + RL +GAID E++I
Sbjct: 364 RMTYTDVTKILRDHDEETIKAFEYLYDDFKNMEELASILNKKRLLRGAIDFDFEESKITL 423
Query: 355 -KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
++ P + +P + A R++ E M++C E IA + + N+ YR + +
Sbjct: 424 NELGKPVEVKPY-------ERAVANRIIEEFMLVCNETIAEHFYWANIPFVYRVHEEPDS 476
Query: 414 D----VSAFAHLPEGPVRSSAIVK-----------------------IMRAAAIDFRKPV 446
+ + F H VR + V ++R+ P
Sbjct: 477 EKLERFNEFIHNLGYAVRWGSEVHPKQLQDVIEKIKGKKEETVVSTLLLRSLKQARYSPE 536
Query: 447 RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 537 CSGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|297568491|ref|YP_003689835.1| Exoribonuclease II [Desulfurivibrio alkaliphilus AHT2]
gi|296924406|gb|ADH85216.1| Exoribonuclease II [Desulfurivibrio alkaliphilus AHT2]
Length = 682
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 140/298 (46%), Gaps = 14/298 (4%)
Query: 180 DNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
D LL R DL HL V ID +LDDAL R Q V IH+AD Y++PGSL
Sbjct: 286 DTLLAQGRVDLRHLPVLTIDGKSTRDLDDALHLER-QGENFVVGIHIADVAHYVKPGSLL 344
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
K A++R TS++ P PM P +L+ + SL G A++ V L DG I +
Sbjct: 345 FKTAVERVTSLYFPEGQVPMLPPRLSEDLCSLVAGRDRPAMSFLVTLTPDGDIVSSRIVA 404
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
S+I+ L YE +LL + + + +L+ + ALR + R++ GA+ + I +
Sbjct: 405 SVIRVARRLDYEQVEQLLPADSDLQ---NLLTLSQALRRR-RIEAGALLLPIPDVNISID 460
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSA 417
+PE + +ED PA LVSEMM+L A Y + + +R Q +
Sbjct: 461 ERGNPE----VSLEDVDIPARLLVSEMMVLANMLAAEYVAQQQVPGLFRSQDDPH---QR 513
Query: 418 FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
H E + + + +P RH +G Y TSPIRR +DL +QV
Sbjct: 514 LVHGYEQDIFTIWRQRKQLKPGQLLTRPERHSGVGAASYTTITSPIRRLLDLAMQHQV 571
>gi|170756581|ref|YP_001779863.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
gi|429244006|ref|ZP_19207488.1| ribonuclease R [Clostridium botulinum CFSAN001628]
gi|169121793|gb|ACA45629.1| ribonuclease R [Clostridium botulinum B1 str. Okra]
gi|428758926|gb|EKX81317.1| ribonuclease R [Clostridium botulinum CFSAN001628]
Length = 725
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|160884747|ref|ZP_02065750.1| hypothetical protein BACOVA_02736 [Bacteroides ovatus ATCC 8483]
gi|237721941|ref|ZP_04552422.1| ribonuclease R [Bacteroides sp. 2_2_4]
gi|423291213|ref|ZP_17270061.1| ribonuclease R [Bacteroides ovatus CL02T12C04]
gi|423293671|ref|ZP_17271798.1| ribonuclease R [Bacteroides ovatus CL03T12C18]
gi|156109782|gb|EDO11527.1| ribonuclease R [Bacteroides ovatus ATCC 8483]
gi|229448810|gb|EEO54601.1| ribonuclease R [Bacteroides sp. 2_2_4]
gi|392663824|gb|EIY57369.1| ribonuclease R [Bacteroides ovatus CL02T12C04]
gi|392677629|gb|EIY71045.1| ribonuclease R [Bacteroides ovatus CL03T12C18]
Length = 718
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|415886855|ref|ZP_11548598.1| ribonuclease R [Bacillus methanolicus MGA3]
gi|387585506|gb|EIJ77831.1| ribonuclease R [Bacillus methanolicus MGA3]
Length = 773
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 52/337 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + ID ++A +LDDA++ RL++G K+ +H+AD + Y+ G+ D
Sbjct: 244 EREIANRRDLRDEMIVTIDGEDAKDLDDAVTVSRLENGNYKLGVHIADVSYYVREGTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
++A KRGTSV+L PM P +L+ SL + +T+S ++ + DG + + +
Sbjct: 304 REAEKRGTSVYLVDRVIPMIPHRLSNGICSLNPK--VDRLTLSCIMEINPDGEVVNHEIF 361
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTA 348
S+IK T +TY ++L L + E +++ E A++ R+++GAID
Sbjct: 362 ESVIKTTERMTYNDVNKILVDKDEALRQRYEPLVPMFEMMEELASILRNKRMKRGAIDFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P ++ + +++ A RL+ E M+ E +A + + ++ YR
Sbjct: 422 FKEAKVIVDEEGKP---TDVMIRERS-VAERLIEEFMLAANETVAEHFHWLDVPFIYRIH 477
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F ++ PE V S+ +++ M+
Sbjct: 478 EDPKEDKLRRFFEFITNFGYIVKGTANHVHPRALQEIIEEVQGKPEEMVVSTVMLRSMQQ 537
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A KP G GL Y FTSPIRRY DL+ H
Sbjct: 538 AKY---KPESLGHFGLSTDFYTHFTSPIRRYPDLIVH 571
>gi|336412863|ref|ZP_08593216.1| ribonuclease R [Bacteroides ovatus 3_8_47FAA]
gi|335942909|gb|EGN04751.1| ribonuclease R [Bacteroides ovatus 3_8_47FAA]
Length = 718
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 155/333 (46%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L + +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|387816459|ref|YP_005676803.1| 3'-to-5' exoribonuclease RNase R [Clostridium botulinum H04402 065]
gi|322804500|emb|CBZ02050.1| 3'-to-5' exoribonuclease RNase R [Clostridium botulinum H04402 065]
Length = 725
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHKVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-VANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|298482589|ref|ZP_07000774.1| ribonuclease R [Bacteroides sp. D22]
gi|336405445|ref|ZP_08586124.1| ribonuclease R [Bacteroides sp. 1_1_30]
gi|295085725|emb|CBK67248.1| RNAse R [Bacteroides xylanisolvens XB1A]
gi|298271296|gb|EFI12872.1| ribonuclease R [Bacteroides sp. D22]
gi|335938026|gb|EGM99920.1| ribonuclease R [Bacteroides sp. 1_1_30]
Length = 718
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|392529839|ref|ZP_10276976.1| ribonuclease R [Carnobacterium maltaromaticum ATCC 35586]
Length = 807
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 44/328 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLT+ + ID ++A +LDDA++ +L +G + +H+AD + Y+ S D +A +
Sbjct: 260 NRRDLTNEMIVTIDGEDAKDLDDAVTVRKLDNGNYHLGVHIADVSYYVTEDSALDGEAFE 319
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P +L+ SL E ++ + ++S G + + + S+I +
Sbjct: 320 RATSVYLTDRVIPMLPHRLSNGLCSLNPNEDRLTMSCEMEINSAGEVVNHDIFPSVIHSS 379
Query: 304 YMLTYESATE-LLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + + L+ +LE AE +++ E L + R +GAID E +I
Sbjct: 380 KRMTYTAVNQILMEKDLEVRAEYQEFVPMFELMGELHELLVNKRQARGAIDFEAPEAQII 439
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
V N PE I+ + RL+ M+ E +A + ++ YR Q + D
Sbjct: 440 VNNEGHPEEIVMRH----RGIGERLIESFMLSANETVAEHYFKLDVPFIYRVHEQPDSDR 495
Query: 415 -------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAIDFRK 444
V+AF L PE V S+ +++ M+ A D +
Sbjct: 496 MQRFMEFVTAFGILMKGTSGEVSPKQLQKVLRGVSGEPEEAVISTMLLRSMKQAKYD-AE 554
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY DL+ H
Sbjct: 555 ALGHFGLGAEFYTHFTSPIRRYPDLIVH 582
>gi|293373757|ref|ZP_06620103.1| ribonuclease R [Bacteroides ovatus SD CMC 3f]
gi|292631247|gb|EFF49879.1| ribonuclease R [Bacteroides ovatus SD CMC 3f]
Length = 718
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGSIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|168177565|ref|ZP_02612229.1| ribonuclease R [Clostridium botulinum NCTC 2916]
gi|226947453|ref|YP_002802544.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
gi|182670398|gb|EDT82372.1| ribonuclease R [Clostridium botulinum NCTC 2916]
gi|226841831|gb|ACO84497.1| ribonuclease R [Clostridium botulinum A2 str. Kyoto]
Length = 725
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|170761827|ref|YP_001785563.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
gi|169408816|gb|ACA57227.1| ribonuclease R [Clostridium botulinum A3 str. Loch Maree]
Length = 725
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLSNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKSGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|28210140|ref|NP_781084.1| exoribonuclease II [Clostridium tetani E88]
gi|28202576|gb|AAO35021.1| exoribonuclease II [Clostridium tetani E88]
Length = 708
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 154/336 (45%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ NR DL +K+ ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKNRLDLRDIKIITIDGEDAKDLDDAISIEKLPNGNFYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KRGTSV+L PM P++L+ SL + +T+S + D G + + V
Sbjct: 298 KEALKRGTSVYLVDRVIPMLPKELSNGICSLNPK--VDRLTLSCFMEIDKTGKVIAHKVA 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTA 348
S+I + +TY ++L N +E K + E + + R+ +GAID
Sbjct: 356 ESVINSSERMTYTDVNKILKDNDQELIKKYDYLMENFKSMEELCKVLYKKRINRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E +I + ED +P+ I Y + + A R++ E M++C E IA Y ++N+ YR
Sbjct: 416 FEECKIIL--DEDGKPVDIKPY---EREIANRMIEEFMLVCNETIAEYMFWSNIPFVYRI 470
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAIVK-----------------------------IMRAA 438
+ D+ H E +K ++R+
Sbjct: 471 HEEP--DLEKLQHFNEFVYNLGYTIKYSKEVHPKSLQQVVEKVRGKKEEVVINTLLLRSL 528
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 529 KQAKYSPECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|410477723|ref|YP_006765360.1| exoribonuclease R [Leptospirillum ferriphilum ML-04]
gi|406772975|gb|AFS52400.1| exoribonuclease R [Leptospirillum ferriphilum ML-04]
Length = 744
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 148/326 (45%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL HL++ ID D A + DDALS + DG ++ IH+AD Y+ PGS DK+A +
Sbjct: 252 NRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDKEAFR 311
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ P PMFPE L+ +SL E A TV V + G + E S+ S+I+
Sbjct: 312 RGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVIRSR 371
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW---------RLQQGAIDTATLETRI 354
TY +L + E K + LR W R Q G++D E I
Sbjct: 372 LRATYSRVHPILAGESTDSPESKF---SVQLRSLWKLAKNLREERFQNGSLDFDLPEPEI 428
Query: 355 KV---ANPED----PEPIINLYVEDQADPAMRLVSEMMIL----------------CGEA 391
+ P D P + + VE+ A R+V+ + E+
Sbjct: 429 VLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEKTES 488
Query: 392 IATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEG-PVRSS---AIVKIMRAAAIDFRKPV 446
+ + +++P R + + D+SA G P+ ++++ ++ A D P+
Sbjct: 489 LGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDV-YPL 547
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY DL+ H
Sbjct: 548 GHFGLAMDDYTHFTSPIRRYPDLIVH 573
>gi|108804441|ref|YP_644378.1| RNAse R [Rubrobacter xylanophilus DSM 9941]
gi|108765684|gb|ABG04566.1| RNAse R [Rubrobacter xylanophilus DSM 9941]
Length = 535
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 144/313 (46%), Gaps = 31/313 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL L ID ++A + DDA+S +R +DG ++++H+AD T Y++PG D+ A+
Sbjct: 101 ERRDLRRLPTVTIDGEDAKDFDDAISILR-EDGGYRLWVHIADVTHYVDPGGALDRQALY 159
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+LP PM P +L+ + SLR AVTV + + +G + + V S+I
Sbjct: 160 RGNSVYLPGTVAPMLPARLSADVCSLRPHADRAAVTVEISVSGEGEVRGWKVYRSLICSD 219
Query: 304 YMLTYESATELLHLNLE-EEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE-- 360
LTYE+ L E E+ EL A L RL+ A LE ++ PE
Sbjct: 220 ARLTYEAVDAFLEGRGEIEQPELV----RTAFELSRRLKTNAAVRGKLE--LESREPEYE 273
Query: 361 -DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
D E + + PA L+ E+MIL +A A+ + S D+ A
Sbjct: 274 VDEEGVPVAASMRPSTPARELIEELMILANVCVARELRRRRGAVFRVHERPSPEDLELLA 333
Query: 420 --------HLPEGPVRSSAIVKIMRAAAIDF----------RKP--VRHGVLGLPGYVQF 459
+ P I +++++ A+ + P V H L L Y F
Sbjct: 334 ERLAAVGVRVEPTPENLGTIARMLKSRALGYLVLRSIPRALYSPGNVGHYGLALEDYTHF 393
Query: 460 TSPIRRYMDLLAH 472
TSPIRRY D+L H
Sbjct: 394 TSPIRRYADVLVH 406
>gi|422854675|ref|ZP_16901339.1| ribonuclease R [Streptococcus sanguinis SK160]
gi|325696170|gb|EGD38061.1| ribonuclease R [Streptococcus sanguinis SK160]
Length = 782
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEVIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK + +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTIFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASTFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|313885321|ref|ZP_07819072.1| ribonuclease R [Eremococcus coleocola ACS-139-V-Col8]
gi|312619427|gb|EFR30865.1| ribonuclease R [Eremococcus coleocola ACS-139-V-Col8]
Length = 812
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 145/326 (44%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL + ID A +LDDA+S + DG ++ +H+AD + Y++ GS D++A +
Sbjct: 259 GRHDLRDQLIITIDGASAKDLDDAISLEKNSDGSYELGVHIADVSHYVQKGSPIDQEAYQ 318
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P+KL+ SL E +T + +++ G + + + S+I +
Sbjct: 319 RGTSVYLTDRVVPMLPQKLSNGLCSLNPKEDRLTITCQMTINTQGKVTAFDIYLSVINSS 378
Query: 304 YMLTYESATELL----HLNLEEEAELKILSEAAALRL---QWRLQQGAIDTATLETRIKV 356
Y +TY E+L L + + + +L + AAL + RL++GA++ T E I V
Sbjct: 379 YRMTYRDVNEILAGDAKLRQDYQEIVPMLEDMAALHKILEKMRLKRGALNFDTKEAEIIV 438
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN---- 412
P+ I V Q R++ M+ E +A Y L + YR Q +
Sbjct: 439 DEEGQPQDI----VVRQRQTGERMIESFMLAANETVAGYFMAKQLPMVYRIHEQPDEEKM 494
Query: 413 IDVSAFAHLPEGPVRSSAIV--------KIMRAAAIDFR------------------KPV 446
+ + FA P+ A + + DF +P+
Sbjct: 495 LRFAEFASSLGVPLGGHAATIKPKQLQESLKKVQGQDFESVLAMIMLRSMQQAKYSIEPL 554
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 555 GHYGLATKEYTHFTSPIRRYPDLMVH 580
>gi|424868332|ref|ZP_18292081.1| Exoribonuclease II [Leptospirillum sp. Group II 'C75']
gi|124516385|gb|EAY57893.1| ribonuclease R [Leptospirillum rubarum]
gi|387221355|gb|EIJ75926.1| Exoribonuclease II [Leptospirillum sp. Group II 'C75']
Length = 744
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 148/326 (45%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL HL++ ID D A + DDALS + DG ++ IH+AD Y+ PGS DK+A +
Sbjct: 252 NRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVLPGSELDKEAFR 311
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ P PMFPE L+ +SL E A TV V + G + E S+ S+I+
Sbjct: 312 RGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLESSIFRSVIRSR 371
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW---------RLQQGAIDTATLETRI 354
TY +L + E K + LR W R Q G++D E I
Sbjct: 372 LRATYSRVHPILAGESTDSPESKF---SVQLRSLWKLAKNLREERFQNGSLDFDLPEPEI 428
Query: 355 KV---ANPED----PEPIINLYVEDQADPAMRLVSEMMIL----------------CGEA 391
+ P D P + + VE+ A R+V+ + E+
Sbjct: 429 VLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHETPSPEKTES 488
Query: 392 IATYGSFNNLALPYRGQPQSNI-DVSAFAHLPEG-PVRSS---AIVKIMRAAAIDFRKPV 446
+ + +++P R + + D+SA G P+ ++++ ++ A D P+
Sbjct: 489 LGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQARYDV-YPL 547
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y FTSPIRRY DL+ H
Sbjct: 548 GHFGLAMDDYTHFTSPIRRYPDLIVH 573
>gi|375144261|ref|YP_005006702.1| ribonuclease R [Niastella koreensis GR20-10]
gi|361058307|gb|AEV97298.1| ribonuclease R [Niastella koreensis GR20-10]
Length = 699
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 46/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R+D+ + + ID +A + DDALS L++G ++ +H+AD + ++EP + DK
Sbjct: 191 DEIKLRRDVREVLTFTIDPVDARDFDDALSIRLLKNGLYEIGVHIADVSHFVEPDTALDK 250
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVDN 297
+A R TSV+LP PM PE+++ E SLR E + +T S + G I++Y +
Sbjct: 251 EAYDRATSVYLPDRVAPMLPERISNELCSLRPHE--DKLTFSAIFQITDAGEISQYWLGK 308
Query: 298 SIIKPTYMLTYESATELLHLNLE-EEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I + TYE E++ + E+ +L++ A R +GAI+ ++ E R K+
Sbjct: 309 TVIHSDHRFTYEEVQEIIEKGEGLYQGEILLLNKLAQQFRAKRFNKGAINFSSQEVRFKL 368
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF----NNLALPYRGQPQS 411
P I + V++ + A +L+ E M+L +A G +L PYR
Sbjct: 369 DETGKP---IGIMVKESKE-AHQLIEEFMLLANRIVAENVGKVKVNKKDLPFPYRVHDTP 424
Query: 412 N-----------------IDVS-------AFAHL-------PEGPVRSSAIVKIMRAAAI 440
+ D S +F + PE V ++ M A AI
Sbjct: 425 DEQKLAPFVEFAKKYGHTFDTSTPEGIAASFNQMLQDVQGKPEQHVLEQLGIRTM-AKAI 483
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H LG Y FTSPIRRY D++ H
Sbjct: 484 YTTENIGHYGLGFKQYCHFTSPIRRYPDVMVH 515
>gi|433654805|ref|YP_007298513.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433292994|gb|AGB18816.1| ribonuclease R [Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 718
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 42/326 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL HL + ID ++A +LDDA++ +L G +Y+ +AD + Y++ GS DK+A+ R
Sbjct: 244 RTDLRHLNIVTIDGEDAKDLDDAVAVEKLDSGDYILYVSIADVSHYVKEGSELDKEALNR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+ PM P +L+ SL E +TV + + +G++ ++ + S+I+
Sbjct: 304 GCSVYFIDRVIPMLPHRLSNGICSLNPSEDRLTLTVKMKIDKNGNVVDHDIFESVIRSKE 363
Query: 305 MLTYESATELLHLNLEEEAELKIL-------SEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY + ++L N E + K L + A + L+ R ++G++D E ++ V
Sbjct: 364 RMTYTNVYKILEGNDELKERYKDLVGDFNNMRDLANILLERRKRRGSVDFDFEEAKVIVD 423
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID--- 414
P I+ + + + A R++ E M++ E +A + + N+ YR +++
Sbjct: 424 ENGKPTDIVKV----ERNIAHRIIEEFMLVANETVAEHMHWINVPFVYRVHEHPDMEKLM 479
Query: 415 -VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR-------------------------- 447
+ F H ++ +I A + K VR
Sbjct: 480 AFNKFIHNLGYHIKGIGGDEIHPKALQELIKQVRGKNEQRIVETLLLRSLKRARYSPEDL 539
Query: 448 -HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 540 GHYALATQYYTHFTSPIRRYPDLIIH 565
>gi|15618415|ref|NP_224700.1| ribonuclease [Chlamydophila pneumoniae CWL029]
gi|15836035|ref|NP_300559.1| ribonuclease [Chlamydophila pneumoniae J138]
gi|16752538|ref|NP_444800.1| VacB/Rnb family exoribonuclease [Chlamydophila pneumoniae AR39]
gi|33241856|ref|NP_876797.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
gi|7674336|sp|Q9Z848.1|RNR_CHLPN RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|4376791|gb|AAD18644.1| ribonuclease family [Chlamydophila pneumoniae CWL029]
gi|8163396|gb|AAF73648.1| exoribonuclease, VacB/Rnb family [Chlamydophila pneumoniae AR39]
gi|8978874|dbj|BAA98710.1| ribonuclease family [Chlamydophila pneumoniae J138]
gi|33236365|gb|AAP98454.1| proteins of ribonuclease [Chlamydophila pneumoniae TW-183]
Length = 676
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 169 KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK +L+ RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 190 EEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADV 249
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR S + P PM P L+ SL+ AV+V +
Sbjct: 250 SHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKS 309
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y + S+I+ Y +TY+ ++ KIL+E A L ++ R ++G
Sbjct: 310 GHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLS-KILNEMATLSKKFSDIREERGC 368
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E+ + +L+ E M+ E +A + S ++LP
Sbjct: 369 IRFVLPSVTMSLDNLQEPVALI----ENHQTFSHKLIEEFMLKANEVVAYHISHQGVSLP 424
Query: 405 YRG-QPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
+R +P ++ ++ AF L P V S V+
Sbjct: 425 FRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRS 484
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 485 MKTASYSTENKGHYG-LKLDYYTHFTSPIRRYIDLIVH 521
>gi|158520465|ref|YP_001528335.1| exoribonuclease II [Desulfococcus oleovorans Hxd3]
gi|158509291|gb|ABW66258.1| Exoribonuclease II [Desulfococcus oleovorans Hxd3]
Length = 666
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 9/292 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DLT L ++ ID + + DDALS +++G ++ IH++D YI+ D +A+K
Sbjct: 273 DRVDLTGLSLFTIDGSQTLDFDDALSLEPMENGACRLGIHISDVGHYIKKEDPLDAEALK 332
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG+S++ PM P +++ SL G+ A+++ + L S + E V S+I+
Sbjct: 333 RGSSIYTADKKIPMLPAEISEGLCSLVAGKPRPAISMLITLSSSAEVMECRVVASVIRVE 392
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY ++L+L+++ L LS A + R++ GA+ E ++ D
Sbjct: 393 NHLTYSQ----VNLSLDKDERLGRLSRIAVRLREKRVRDGALLIEIPELYVQF----DDN 444
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+ L D+ P+ L+ EMMIL +A + + L +R QP+ + E
Sbjct: 445 RAVVLAKGDRESPSRILIEEMMILANTVMARFLKEHGLPAIFRSQPEPKTRLFKKGTTGE 504
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ K++ +D KP RH LG+ Y TSPIR+Y DL+ QV
Sbjct: 505 TLFQNWVQRKMVARVVVD-TKPERHCGLGVDLYTSATSPIRKYADLITQRQV 555
>gi|449107228|ref|ZP_21743885.1| hypothetical protein HMPREF9729_02150 [Treponema denticola ASLM]
gi|451968924|ref|ZP_21922153.1| hypothetical protein HMPREF9728_01339 [Treponema denticola US-Trep]
gi|448963029|gb|EMB43714.1| hypothetical protein HMPREF9729_02150 [Treponema denticola ASLM]
gi|451702377|gb|EMD56799.1| hypothetical protein HMPREF9728_01339 [Treponema denticola US-Trep]
Length = 623
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 140/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
IN Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FINPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|392428806|ref|YP_006469817.1| VacB/Rnb family exoribonuclease [Streptococcus intermedius JTH08]
gi|419776515|ref|ZP_14302437.1| ribonuclease R [Streptococcus intermedius SK54]
gi|383845926|gb|EID83326.1| ribonuclease R [Streptococcus intermedius SK54]
gi|391757952|dbj|BAM23569.1| VacB/Rnb family exoribonuclease [Streptococcus intermedius JTH08]
Length = 779
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 155/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + +++V
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTV 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
++IK + +TY +++ + E+ A K ++E A+ R ++GA++
Sbjct: 360 TQTVIKTAFRMTYSDVNDIITGDKEKRAAFKTIVPSIEQMTELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P II Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGVAERMIESFMLVANETVAEHFARLNLPFLYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 536 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVH 569
>gi|422848230|ref|ZP_16894906.1| ribonuclease R [Streptococcus sanguinis SK115]
gi|325690762|gb|EGD32763.1| ribonuclease R [Streptococcus sanguinis SK115]
Length = 782
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL ++ ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEVIFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSNYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHII 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGMASSMSQQALQDIMEAVKDQPYEEVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|334365680|ref|ZP_08514630.1| ribonuclease R [Alistipes sp. HGB5]
gi|313158113|gb|EFR57518.1| ribonuclease R [Alistipes sp. HGB5]
Length = 743
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 146/329 (44%), Gaps = 47/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + +D +A + DDALS R++DG ++ +H+AD T Y+ P S D +A++R
Sbjct: 261 RRDFRQVTTFTVDPADAKDFDDALSVRRVRDGIWEIGVHIADVTHYVRPQSTIDDEAVER 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 321 GTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIYSDR 380
Query: 305 MLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY A E++ + AE L + A ALR Q R + GAI E + K+ P
Sbjct: 381 RFTYAEAQEVIETGRGDYAEEILTLNRLAQALRRQ-RFKNGAISFDREEVKFKLDETGKP 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYR---GQPQS 411
+ +Y ++Q + + +++ E M+L CG+ G + YR +
Sbjct: 440 ---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRKTDKGRTVERPMVYRVHDSPSEE 495
Query: 412 NID-----VSAFAHLPEGPVRSSAIVKIMR-----------------------AAAIDFR 443
+D + F H+ + + AI K + A A
Sbjct: 496 KLDRFRQFILRFGHIFKA-TKGRAIAKELNKLFAQIKGTTEENAVSTMAVRSMAKAYYTT 554
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L P Y FTSPIRRY D++ H
Sbjct: 555 DNIGHYGLAFPYYTHFTSPIRRYPDMMVH 583
>gi|421488853|ref|ZP_15936241.1| ribonuclease R [Streptococcus oralis SK304]
gi|400368070|gb|EJP21085.1| ribonuclease R [Streptococcus oralis SK304]
Length = 784
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 160/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVH 570
>gi|390945738|ref|YP_006409498.1| RNAse R [Alistipes finegoldii DSM 17242]
gi|390422307|gb|AFL76813.1| RNAse R [Alistipes finegoldii DSM 17242]
Length = 743
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 146/329 (44%), Gaps = 47/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + +D +A + DDALS R++DG ++ +H+AD T Y+ P S D +A++R
Sbjct: 261 RRDFRQVTTFTVDPADAKDFDDALSVRRVRDGVWEIGVHIADVTHYVRPQSTIDDEAVER 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 321 GTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIYSDR 380
Query: 305 MLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TY A E++ + AE L + A ALR Q R + GAI E + K+ P
Sbjct: 381 RFTYAEAQEVIETGRGDYAEEILTLNRLAQALRRQ-RFKNGAISFDREEVKFKLDETGKP 439
Query: 363 EPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYR---GQPQS 411
+ +Y ++Q + + +++ E M+L CG+ G + YR +
Sbjct: 440 ---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRKTDKGRTVERPMVYRVHDSPSEE 495
Query: 412 NID-----VSAFAHLPEGPVRSSAIVKIMR-----------------------AAAIDFR 443
+D + F H+ + + AI K + A A
Sbjct: 496 KLDRFRQFILRFGHIFKA-TKGRAIAKELNKLFAQIKGTTEENAVSTMAVRSMAKAYYTT 554
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L P Y FTSPIRRY D++ H
Sbjct: 555 DNIGHYGLAFPYYTHFTSPIRRYPDMMVH 583
>gi|384449235|ref|YP_005661837.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila
pneumoniae LPCoLN]
gi|269303381|gb|ACZ33481.1| 3'-5' exoribonuclease, VacB and RNase II family [Chlamydophila
pneumoniae LPCoLN]
Length = 659
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 169 KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK +L+ RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 173 EEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADV 232
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR S + P PM P L+ SL+ AV+V +
Sbjct: 233 SHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKS 292
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y + S+I+ Y +TY+ ++ KIL+E A L ++ R ++G
Sbjct: 293 GHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLS-KILNEMATLSKKFSDIREERGC 351
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E+ + +L+ E M+ E +A + S ++LP
Sbjct: 352 IRFVLPSVTMSLDNLQEPVALI----ENHQTFSHKLIEEFMLKANEVVAYHISHQGVSLP 407
Query: 405 YRG-QPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
+R +P ++ ++ AF L P V S V+
Sbjct: 408 FRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRS 467
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 468 MKTASYSTENKGHYG-LKLDYYTHFTSPIRRYIDLIVH 504
>gi|294806194|ref|ZP_06765041.1| ribonuclease R [Bacteroides xylanisolvens SD CC 1b]
gi|294446450|gb|EFG15070.1| ribonuclease R [Bacteroides xylanisolvens SD CC 1b]
Length = 703
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 242 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 301
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 302 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIVHTV 361
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 362 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 419
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 420 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 475
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 476 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 535
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 536 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 567
>gi|18310278|ref|NP_562212.1| ribonuclease R [Clostridium perfringens str. 13]
gi|18144958|dbj|BAB81002.1| ribonuclease R [Clostridium perfringens str. 13]
Length = 751
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIH 566
>gi|168217054|ref|ZP_02642679.1| ribonuclease R [Clostridium perfringens NCTC 8239]
gi|182380798|gb|EDT78277.1| ribonuclease R [Clostridium perfringens NCTC 8239]
Length = 751
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIH 566
>gi|148378235|ref|YP_001252776.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
gi|153931432|ref|YP_001382636.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
gi|153934693|ref|YP_001386188.1| ribonuclease R [Clostridium botulinum A str. Hall]
gi|148287719|emb|CAL81784.1| ribonuclease R [Clostridium botulinum A str. ATCC 3502]
gi|152927476|gb|ABS32976.1| ribonuclease R [Clostridium botulinum A str. ATCC 19397]
gi|152930607|gb|ABS36106.1| ribonuclease R [Clostridium botulinum A str. Hall]
Length = 725
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKNGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKSLQSIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RY---SPECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|385840694|ref|YP_005864018.1| Ribonuclease R 1 [Lactobacillus salivarius CECT 5713]
gi|300214815|gb|ADJ79231.1| Ribonuclease R 1 [Lactobacillus salivarius CECT 5713]
Length = 799
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKIGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|308274105|emb|CBX30704.1| hypothetical protein N47_E42160 [uncultured Desulfobacterium sp.]
Length = 663
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 140/294 (47%), Gaps = 18/294 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT L V ID + DDA+S + + G + IH+AD +++ G D +A+ R
Sbjct: 274 RKDLTDLLVITIDGQSTLDFDDAIS-IEDKGGYYSLGIHIADVAHFVKKGDPVDSEAIIR 332
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S+++P PM P +A E SL++G++ ++V V + I +Y + S+++
Sbjct: 333 ASSIYMPDHKIPMLPAVIAEEVCSLKEGQIRPCISVMVKIRPTADIIDYDIFPSLVRVKR 392
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
+TY A + +++ E+ +L + A + RL GA+ + + V D
Sbjct: 393 QMTYYDANTV----VDDNKEIAVLYDLAKKFRRARLDSGAVYITMPDINVWV----DENR 444
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
+I L ++ P ++SE+MI+ +A + + NN +R QP A L G
Sbjct: 445 VITLNKINRESPGRMMISEIMIMANWLMAKFLAENNTPAVFRAQP------DAKQRLYRG 498
Query: 425 PVRSSAIVKIMRAAAIDFR---KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
S + R F P RH LGL YV TSPIR+Y DL+ Q+
Sbjct: 499 ENGSLFQNYMQRRLLSRFNLGSVPERHAGLGLNCYVTATSPIRKYYDLITQRQI 552
>gi|440781366|ref|ZP_20959708.1| ribonuclease R [Clostridium pasteurianum DSM 525]
gi|440220971|gb|ELP60177.1| ribonuclease R [Clostridium pasteurianum DSM 525]
Length = 756
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 157/332 (47%), Gaps = 42/332 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ NR+DL +K+ ID ++A +LDDA+S +L++G + +H+AD + Y+ + D
Sbjct: 238 EEEYKNRRDLRDIKMVTIDGEDAKDLDDAVSIEKLENGNYYLGVHIADVSNYVREKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P KL+ SL A++ + ++ +G + + V S
Sbjct: 298 KEALLRGTSVYLIDRVIPMLPRKLSNGICSLNPKVDRLALSCFMEINEEGKVVNHDVFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY T+++ +E E + E + + R+ +G+ID
Sbjct: 358 IIKTNERMTYTDVTKIMRDKDKETIEKYKYLYEDFMAMEELCNILYKRRINRGSIDFDFQ 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E++I + P I++ ++A A R++ E M++C E IA + + NL YR
Sbjct: 418 ESKIILNEQGKP---IDIKPYERA-IANRVIEEFMLVCNETIAEHMFWTNLPFVYRIHED 473
Query: 411 SNID----VSAFAH-------LPEGPVRSSAIVKIMRA----------AAIDFR--KPVR 447
+ + + FAH V + KI+ A + + R K R
Sbjct: 474 PDTEKLEHFNEFAHNLGYVVRWGTNKVHPKELQKIIEAVKGKKEETVVSTLLLRSLKQAR 533
Query: 448 H-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
+ G GL Y FTSPIRRY DL+ H
Sbjct: 534 YSPECVGHFGLAAKYYCHFTSPIRRYPDLMIH 565
>gi|422345960|ref|ZP_16426874.1| ribonuclease R [Clostridium perfringens WAL-14572]
gi|373227174|gb|EHP49494.1| ribonuclease R [Clostridium perfringens WAL-14572]
Length = 751
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIH 566
>gi|422884558|ref|ZP_16931006.1| ribonuclease R [Streptococcus sanguinis SK49]
gi|332358988|gb|EGJ36809.1| ribonuclease R [Streptococcus sanguinis SK49]
Length = 782
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHAI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSKHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|366166400|ref|ZP_09466155.1| ribonuclease R [Acetivibrio cellulolyticus CD2]
Length = 784
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 156/331 (47%), Gaps = 53/331 (16%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L++ ID ++A +LDDA+S +L++G K+ +H+AD + Y+ S D++A+KR
Sbjct: 246 RRDLRGLRMVTIDGEDAKDLDDAVSVEKLKNGNYKLGVHIADVSHYVTEDSPLDREALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P+ L+ SL + TV + + S G + ++ + S+I
Sbjct: 306 GTSVYLVDRVIPMLPKALSNGICSLNPQIDRLSFTVMMEIDSTGKVVDHEIFESVINTNE 365
Query: 305 MLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDTATLETR 353
+TY + ++L +E++ EL K + E A + R+Q+GAID E +
Sbjct: 366 RMTYTNVYKIL---VEKDKELLERYDYLIDDFKAMEELAMILRNKRMQRGAIDFDFEEAK 422
Query: 354 IKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
I + E +PI I Y + A +++ E M+ C E +A + + N+ YR +
Sbjct: 423 ILL--DEKGKPIQIKRY---EITIANKIIEEFMLACNETVAEHFFWANVPFVYRVHEDPD 477
Query: 413 ID----VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH-------------------- 448
D S F H ++ I KI A D + V++
Sbjct: 478 TDKIENFSEFVHNLGYTLK--GINKIHPKALQDLLQKVKNTREERIISTVMLRSLQKAKY 535
Query: 449 -----GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 536 THLNQGHFGLAAKYYCHFTSPIRRYPDLIIH 566
>gi|328948707|ref|YP_004366044.1| ribonuclease II [Treponema succinifaciens DSM 2489]
gi|328449031|gb|AEB14747.1| ribonuclease II [Treponema succinifaciens DSM 2489]
Length = 647
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 141/282 (50%), Gaps = 21/282 (7%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
YAID + + DDA++ DG+ ++IH+ADP ++P S DK+A RG ++++P
Sbjct: 277 YAIDNAWSTDPDDAVAF----DGKY-LWIHIADPASTVQPDSPIDKNARARGATLYIPEG 331
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
M E +E +L E A++ ++L +G+I + SV +++K L+YE A +
Sbjct: 332 AARMLCES-CLEDYALGLKEKSRALSFRILLDENGAIEDCSVFKTLVK-VKRLSYEQADD 389
Query: 314 LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQ 373
L+ E ELK L A ++ R + GA+ + E I V PE + I V +
Sbjct: 390 LM-----ESEELKPLFSIAWKNVERRKKSGAVQISMPEVHISV-EPETKKVSIEPLVHPK 443
Query: 374 ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVK 433
+ +R EMM+L GE A + N + P+ Q I +PEG + +
Sbjct: 444 SSEMIR---EMMLLAGEGAAKFAFKNQIPFPFVSQEAPVIP----DDVPEGLAGQFRLRR 496
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
MR ++ P H LGL Y Q TSP+RRY DL+AH Q+
Sbjct: 497 CMRKRSVGV-TPGMHCALGLNMYSQVTSPLRRYGDLIAHIQL 537
>gi|384431097|ref|YP_005640457.1| ribonuclease R [Thermus thermophilus SG0.5JP17-16]
gi|333966565|gb|AEG33330.1| ribonuclease R [Thermus thermophilus SG0.5JP17-16]
Length = 742
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 156/335 (46%), Gaps = 47/335 (14%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D L+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELRRREDFRGLRVFTIDGVDAKDFDDAIHVERLPGG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
SL D++A RGTSV+LP PM PE+L+ SLR GE ++V V L + +
Sbjct: 275 SLLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLTENLEVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQGAID 346
+I+ LTY E+ E H L E +L++L + + RL++GA+D
Sbjct: 335 FREGVIRSVARLTYTEVEAFAEGFGFPEAHAFLAE--DLRLLLDLTQRMREKRLKEGALD 392
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPY 405
E +++V + L++ QA+P R L+ E+M+L +A Y L +
Sbjct: 393 FGFPEVKVEVGEEGE------LHLIPQAEPKARSLIEELMLLANRLVAEYLVQKGLPGLF 446
Query: 406 RGQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRA 437
R + D A A L PE PV + +++ +R
Sbjct: 447 RVHEEPVQDAYEKLRQALARLGYTLPPKLSGHALQKALLASRGRPEEPVVAYLVLRSLRL 506
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L + Y+ FTSPIRRY DL+ H
Sbjct: 507 ARYAPEN-LGHFGLAMEHYLHFTSPIRRYPDLVVH 540
>gi|306829349|ref|ZP_07462539.1| ribonuclease R [Streptococcus mitis ATCC 6249]
gi|304428435|gb|EFM31525.1| ribonuclease R [Streptococcus mitis ATCC 6249]
Length = 784
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 160/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G +A Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVAHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVH 570
>gi|255524714|ref|ZP_05391666.1| ribonuclease R [Clostridium carboxidivorans P7]
gi|255511608|gb|EET87896.1| ribonuclease R [Clostridium carboxidivorans P7]
Length = 722
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 57/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYERRKDLRDLTIVTIDGEDAKDLDDAVSLEKLPNGNYHLGVHIADVSNYVKDKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++++
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--VDRLTLSCFMEIDKTGKVVDHNIT 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L E+ + K++ E + + R+Q+GAID
Sbjct: 356 ESIIKTNERMTYTDVTKILRDTDEDVIKRYDYLVDTFKLMEELCGILYKKRIQRGAIDFD 415
Query: 349 TLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I ++ P + +P + A R++ E M++C E IA + + N+ Y
Sbjct: 416 FEECKIILNELGKPIEIKPY-------ERAIANRIIEEFMLVCNETIAEHMFWANMPFVY 468
Query: 406 RGQPQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIM 435
R + + + + F H E V S+ +++ M
Sbjct: 469 RIHEEPDEEKLMHFNEFVHNLGYVVRMGQEVHPKALQDIVEKVKGKKEETVVSTLLLRSM 528
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A P G GL Y FTSPIRRY DL+ H
Sbjct: 529 MKARY---APECTGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|262405839|ref|ZP_06082389.1| ribonuclease R [Bacteroides sp. 2_1_22]
gi|294647800|ref|ZP_06725352.1| ribonuclease R [Bacteroides ovatus SD CC 2a]
gi|345510350|ref|ZP_08789918.1| ribonuclease R [Bacteroides sp. D1]
gi|229443054|gb|EEO48845.1| ribonuclease R [Bacteroides sp. D1]
gi|262356714|gb|EEZ05804.1| ribonuclease R [Bacteroides sp. 2_1_22]
gi|292636708|gb|EFF55174.1| ribonuclease R [Bacteroides ovatus SD CC 2a]
Length = 718
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGCVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|422882685|ref|ZP_16929141.1| ribonuclease R [Streptococcus sanguinis SK355]
gi|332358718|gb|EGJ36541.1| ribonuclease R [Streptococcus sanguinis SK355]
Length = 782
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLERRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T SV++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSVIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDCMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|168182158|ref|ZP_02616822.1| ribonuclease R [Clostridium botulinum Bf]
gi|237793551|ref|YP_002861103.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
gi|182674694|gb|EDT86655.1| ribonuclease R [Clostridium botulinum Bf]
gi|229263406|gb|ACQ54439.1| ribonuclease R [Clostridium botulinum Ba4 str. 657]
Length = 725
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 157/336 (46%), Gaps = 51/336 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 238 EEEYKRREDLRDLTIVTIDGEDAKDLDDAISLEKLPNGNYYLGVHIADVSHYVKEKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++ V
Sbjct: 298 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--IDRLTLSCFMEIDKSGKVVDHRVV 355
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK T +TY T++L EE K++ E + + RL++GAID
Sbjct: 356 ESIIKSTERMTYTDVTKILRDEDEETINKYSNLVDYFKLMEELCKILYKKRLKRGAIDFD 415
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + P I + ++A A R++ E M++C E IA + ++NL YR
Sbjct: 416 FEECKIILDEKGKP---IEIKPYERA-IANRIIEEFMLVCNETIAEHMFWSNLPFVYRIH 471
Query: 409 PQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ + + F H E V S+ +++ ++ A
Sbjct: 472 EDPDEEKLMHFNEFVHNLGYVIRWNNDIHPKALQTIIEKVKGEKEETVVSTLLLRSLKQA 531
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 532 RYS---PECIGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|422874165|ref|ZP_16920650.1| ribonuclease R [Clostridium perfringens F262]
gi|380304916|gb|EIA17200.1| ribonuclease R [Clostridium perfringens F262]
Length = 751
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDQELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIH 566
>gi|313675162|ref|YP_004053158.1| RNAse r [Marivirga tractuosa DSM 4126]
gi|312941860|gb|ADR21050.1| RNAse R [Marivirga tractuosa DSM 4126]
Length = 721
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 140/330 (42%), Gaps = 41/330 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+D+ + ID ++A + DDA+S RL +G ++ IH+AD T Y++PG+L +
Sbjct: 258 EKEIAKRRDMRDTTTFTIDPEDAKDFDDAISFKRLDNGHYEIGIHIADVTYYVQPGTLLE 317
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A R TSV+L T PM PE+L+ SLR E + L +G+I +
Sbjct: 318 EEAFHRATSVYLVDRTIPMLPERLSNGLCSLRPNEDKFTFSAVFELDDNGTIHNEWFGRT 377
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
I YE A +L + + A EL L+ A R + GAI ++E + K+
Sbjct: 378 ITHSDRRFAYEEAQAILEARIGDHAEELHSLNSIAKNLKATRFKHGAIAFESVEVKFKLD 437
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN-----NLALPYRGQ---- 408
P ++ +D A +LV E M+L +A + + L YR
Sbjct: 438 ENGKPLGVVPKVRQD----AHKLVEEYMLLANRKVAEFIATKKKGDQKLTFVYRQHDYPD 493
Query: 409 PQSNIDVSAFAHL--------------------------PEGPVRSSAIVKIMRAAAIDF 442
P+ S FA PE V S ++ M A
Sbjct: 494 PEKLSTFSIFAKRFGHELEIEEKAVAKSLNSLMNDIQGKPEQNVLESLAIRSMAKAKYTT 553
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ G L Y FTSPIRRY D++ H
Sbjct: 554 KNSFHFG-LAFQYYTHFTSPIRRYPDVMVH 582
>gi|410027787|ref|ZP_11277623.1| RNAse R [Marinilabilia sp. AK2]
Length = 731
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 158/351 (45%), Gaps = 58/351 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + NR+D+ + + ID +A + DDA+S +L++G ++ +H+AD T Y++P + ++
Sbjct: 265 DEIKNRRDMRDIPTFTIDPVDAKDFDDAISYRKLENGNYEIGVHIADVTHYVKPKTKLEQ 324
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A R TSV+L T PM PE+L+ SLR E + +T S V D + + +
Sbjct: 325 EAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENADVLNHWIAR 382
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-----ELKILSEAAALRLQWRLQQGAIDTATLET 352
++ YE A E N++++ EL L+E A + R +GAI+ T+E
Sbjct: 383 TVTHSDRRFAYEEAQE----NIDQQKGDFYQELTFLNELAKKIRKRRFDKGAINFETVEV 438
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA---LPYRGQP 409
+ K+ + P + L ++++ D +L+ E M+L +A + N YR
Sbjct: 439 KFKLDDKGTP---LGLMIKERKD-IHKLIEEFMLLANRTVAEFIYNRNKGKDTFVYRIHD 494
Query: 410 QSNID--------VSAFAH---LPEGPVRSSAIVKIMR-------------------AAA 439
+I+ F H + EG S A+ ++M A A
Sbjct: 495 FPDIEKLETFSTFAKRFGHDIKISEGTKISKALNQLMDEIVGKPEQNVLEQLAIRSMAKA 554
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMD-----LLAHY---QVGLQAAAW 482
+P H L Y FTSPIRRY D LL HY G A AW
Sbjct: 555 KYTTEPKGHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDGGKGPDAEAW 605
>gi|312135790|ref|YP_004003128.1| ribonuclease r [Caldicellulosiruptor owensensis OL]
gi|311775841|gb|ADQ05328.1| ribonuclease R [Caldicellulosiruptor owensensis OL]
Length = 716
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 167/349 (47%), Gaps = 55/349 (15%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I N + +++L R DL ++ ID ++A + DDA+S +L +G + +H+AD
Sbjct: 235 KEIENIPDEVTQEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADV 294
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y++P + DK+A +RGTSV+L PM P KL+ SL + +T SV++ D
Sbjct: 295 SYYVKPNTHLDKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEID 352
Query: 288 --GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAAL 334
G++ ++ + S+I+ +TY + T++L EE+ E L+++ E A +
Sbjct: 353 KQGNVVKHDIFESVIRSKERMTYTNVTKILK---EEDKELLKRYEHIREDLELMRELALI 409
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT 394
+ R+++GA+D ET++ + P +I + + +++ E M++C E +A
Sbjct: 410 LREKRMKRGALDFDFDETKVILDKNGKPVDVIRY----ELTISNKIIEEFMLICNETVAN 465
Query: 395 YGSFNNLALPYRGQPQSNID-VSAFAHL------------------------------PE 423
+ + N+ YR + +I+ + FA PE
Sbjct: 466 HFYWLNVPFLYRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAVLEQSRGTPE 525
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V + ++ ++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 526 ERVIHTLCLRSLKKARY-CEENLGHFGLSTDYYCHFTSPIRRYPDLVIH 573
>gi|157693783|ref|YP_001488245.1| ribonuclease R [Bacillus pumilus SAFR-032]
gi|157682541|gb|ABV63685.1| ribonuclease R [Bacillus pumilus SAFR-032]
Length = 780
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 159/336 (47%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +V+ +G + ++ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDRNGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ EL + + + A + + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDQDEELLDKYEPLVPMFQEMEKLAEILREKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DEEGAAKDVVVRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ N + V+ F ++ PE V + +++ M+
Sbjct: 475 HEEPNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D + + H L Y FTSPIRRY DL+ H
Sbjct: 535 QAKYD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|418961655|ref|ZP_13513540.1| ribonuclease R [Lactobacillus salivarius SMXD51]
gi|380343750|gb|EIA32098.1| ribonuclease R [Lactobacillus salivarius SMXD51]
Length = 799
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|312881458|ref|ZP_07741252.1| exoribonuclease II [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370880|gb|EFP98338.1| exoribonuclease II [Vibrio caribbenthicus ATCC BAA-2122]
Length = 659
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 185/412 (44%), Gaps = 63/412 (15%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNG-----------ASCSIKPQQVTFV 159
QKGL + K+ D ++ + + P + D++G A I P VT
Sbjct: 116 QKGLKSDDLKEGDWIVGHLIRHP-------LTDESGFFVEISQKVADADDKIAPWWVTLA 168
Query: 160 VPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK 219
+ + K I + Q +D L R+D++HL ID + ++DDAL + + G K
Sbjct: 169 ENDLPNSEPKGIDQW-QILDDTALERRDISHLPFVTIDGESTKDMDDALYIEKSESGDFK 227
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT 279
+ + +ADPT YI P S DK A +RG +++LP PM P LA + SL + EV A+
Sbjct: 228 LVVAIADPTAYIVPDSEMDKVARERGFTIYLPGRNIPMLPRDLADDLCSLMENEVRPALC 287
Query: 280 VSVVLHSDGSIAE-YSVDNSIIKPTYMLTYESATELLHLN----LEEEAEL-KILSEA-- 331
SV + + G IA+ + IK L+Y+ ++ L + +A++ K++SE
Sbjct: 288 CSVTIDNTGMIADDIEFFAAQIKSHAKLSYDHVSDFLENGGCDEWQPDADIAKVVSELYE 347
Query: 332 -AALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---L 387
+ +R WR Q + + R +++ D +I ++ D+ A RLV E MI +
Sbjct: 348 FSKVRANWREQNAVVFPDRPDYRFELSEDND---VIVIHA-DKRRSANRLVEEAMITANI 403
Query: 388 CGEAIATY----GSFNN--------------LALPYRGQP---QSNIDVSAFAHL----- 421
CG I G FN L P Q +S D++ FA L
Sbjct: 404 CGGRILKTSFDSGVFNTHAGFKPEKLAEVVALVNPEGEQAFTEESLTDLNGFAELRRWLA 463
Query: 422 -PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
E + I K + I KP+ H +GL Y +TSPIR+Y D++ H
Sbjct: 464 SQETSYLDNRIRKFQAYSEIG-NKPLPHYAMGLDIYATWTSPIRKYGDMINH 514
>gi|157150067|ref|YP_001450020.1| ribonuclease R [Streptococcus gordonii str. Challis substr. CH1]
gi|157074861|gb|ABV09544.1| ribonuclease R [Streptococcus gordonii str. Challis substr. CH1]
Length = 782
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLKGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHKILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ +IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|254372113|ref|ZP_04987606.1| ribonuclease II family protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569844|gb|EDN35498.1| ribonuclease II family protein [Francisella novicida GA99-3549]
Length = 618
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + + + DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSKDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEIDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDKQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G +A + NN+++P+ QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVTVAQFCIQNNISVPFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSIHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|375254472|ref|YP_005013639.1| ribonuclease R [Tannerella forsythia ATCC 43037]
gi|363406269|gb|AEW19955.1| ribonuclease R [Tannerella forsythia ATCC 43037]
Length = 732
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 190/446 (42%), Gaps = 78/446 (17%)
Query: 100 LLEDK-LENQVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWM--VYDQNGASCSIKPQQ- 155
+ EDK L N + L +++D+ L+ + + P+G KN + V D G + +
Sbjct: 183 VTEDKTLSNDIFIPREHLHGGRNNDKALVRIIEWPEGAKNPLGEVIDILGKAGDNNTEMH 242
Query: 156 ---VTFVVPGVEKFDHKDISNFL--QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSA 210
F +P ++ +N + + +++ R+D + + ID +A + DDALS
Sbjct: 243 AILAEFGLPYTYPEKVEEAANRIPTEITDEDRAGREDFRGVVTFTIDPKDAKDFDDALSL 302
Query: 211 MRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+L++G +V +H+AD T Y++PGS+ DK+A +R TSV+L T PM PE L SLR
Sbjct: 303 RKLENGLWEVGVHIADVTHYVKPGSIIDKEAYERATSVYLVDRTIPMLPESLCNNLCSLR 362
Query: 271 QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILS 329
E +V ++ + I + +II+ TYE A ++ + + E+ L
Sbjct: 363 PNEEKLTFSVIFEMNDEAEILASRIGRTIIESDRRFTYEEAQNVIETGQGDYKDEVLTLH 422
Query: 330 EAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG 389
A R G+ID E + ++ P +N+Y ++ + A +L+ E M++
Sbjct: 423 HLAQQLRNIRFASGSIDFDRYEVKFEIDEKGKP---LNVYFKESKE-ANKLIEEFMLIAN 478
Query: 390 EAIA-------------------------------------------TYGS-------FN 399
A+A T GS N
Sbjct: 479 RAVAESMGKQPKGKTKKTFVYRVHEQPDPEKMKNFAGFIRRFGYKLKTDGSKSELTKGIN 538
Query: 400 NLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQF 459
NL +G+P+ N+ + + AI + +A + + H L P Y F
Sbjct: 539 NLLDKAQGKPEENL------------IETLAIRSMQKARYST--ENIGHYGLAFPYYSHF 584
Query: 460 TSPIRRYMDLLAHYQVGLQAAAWVSV 485
TSPIRRY D++AH + A SV
Sbjct: 585 TSPIRRYPDMMAHRLLERYATGGRSV 610
>gi|422859716|ref|ZP_16906360.1| ribonuclease R [Streptococcus sanguinis SK330]
gi|327470599|gb|EGF16055.1| ribonuclease R [Streptococcus sanguinis SK330]
Length = 782
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLVGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHEILERMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EDPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|332663653|ref|YP_004446441.1| ribonuclease R [Haliscomenobacter hydrossis DSM 1100]
gi|332332467|gb|AEE49568.1| ribonuclease R [Haliscomenobacter hydrossis DSM 1100]
Length = 728
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 45/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + ID + A + DDALS + L +G ++V +H+AD T Y+ + DK+A+ R
Sbjct: 270 RRDMRKTPTFTIDPENARDFDDALSFLYLPNGNLEVGVHIADVTHYVHENTTLDKEALAR 329
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG--SIAEYSVDNSIIKP 302
TSV+L PM PEKL+ E SLR E + +T S V D I E ++I
Sbjct: 330 STSVYLVDRVCPMLPEKLSNELCSLRPNE--DKLTFSAVFTFDAHDKIVERWFGKTVIHS 387
Query: 303 TYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+YE A +L + A ELK+L+ A + R ++GAI+ + E R ++ +
Sbjct: 388 DRRFSYEEAQAVLDSGEGDFAKELKVLNALAHKLRKERFKKGAINFESEEVRFRLDDNGV 447
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY----GSFNNLALP--YRGQPQSNID- 414
P I ++ +++ D M L+ + M+L + +AT+ G+ + +P YR + N D
Sbjct: 448 P---IEVFTKERKDAHM-LIEDFMLLANKEVATFVSNKGTQDGAEIPFVYRVHDEPNTDK 503
Query: 415 -----------------------VSAFAHLPEGPVRSSAI-----VKIMRAAAIDFRKP- 445
++F L + A+ + I A ++
Sbjct: 504 VEELARFARQMGVEMNVTTPKDIANSFNKLAALAEENEALSILGPIAIRTMAKAEYSSDN 563
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY D+LAH
Sbjct: 564 IGHYGLAFDFYSHFTSPIRRYSDVLAH 590
>gi|90962131|ref|YP_536047.1| ribonuclease R 1 [Lactobacillus salivarius UCC118]
gi|90821325|gb|ABD99964.1| Ribonuclease R 1 [Lactobacillus salivarius UCC118]
Length = 799
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|110800238|ref|YP_695945.1| ribonuclease R [Clostridium perfringens ATCC 13124]
gi|110674885|gb|ABG83872.1| ribonuclease R [Clostridium perfringens ATCC 13124]
Length = 751
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +K+ ID ++A +LDDA+S RL +G K+ +H+AD T Y++ + DK+A KR
Sbjct: 246 RTDLRDVKMVTIDGEDAKDLDDAVSIERLPNGNYKLGVHIADVTHYVKENNPLDKEAFKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P+KL+ SL A+T + + G++ +S+ S+IK
Sbjct: 306 ATSVYLVDRVIPMLPKKLSNGICSLNPQVDRLALTCFMEIDHKGNVVNHSIHESVIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L N +E E K + E + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDNDKELIERYKDLVDDFKAMEELCKILNKRRMGRGAIDFEFAESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---------- 406
P I++ ++A A R++ E M++C E IA Y + + YR
Sbjct: 426 DEKGKP---IDIKPYERA-IANRIIEEFMLVCNETIAEYMNKAEIPFVYRIHEEPDNEKL 481
Query: 407 ----------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KPVRHG 449
G+ D+ +G I ++ + + R P G
Sbjct: 482 QRFKNFAYSLGYSFNFGELIEPRDLQKVVEEVKGKNEEMVINTLLLRSMMQARYSPDCAG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL H
Sbjct: 542 HFGLAAEYYCHFTSPIRRYPDLQIH 566
>gi|417788632|ref|ZP_12436315.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus salivarius NIAS840]
gi|334308809|gb|EGL99795.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus salivarius NIAS840]
Length = 799
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|167754476|ref|ZP_02426603.1| hypothetical protein ALIPUT_02772 [Alistipes putredinis DSM 17216]
gi|167659101|gb|EDS03231.1| ribonuclease R [Alistipes putredinis DSM 17216]
Length = 757
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 158/350 (45%), Gaps = 54/350 (15%)
Query: 173 NFLQKAED------------NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
+F QK ED + R+D + + ID +A + DDALS +++DG +V
Sbjct: 233 HFEQKVEDAAQAIPSTITKADYAARRDFRKITTFTIDPADAKDFDDALSIRKIEDGVWEV 292
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+H+AD T Y++P S+ D +A +RGTSV+L T PM PEKL+ E SLR E +
Sbjct: 293 GVHIADVTHYVQPRSVIDTEAEERGTSVYLVDRTIPMLPEKLSNELCSLRPDEESLCFSA 352
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL-QWR 339
L+ + + + ++I TYE A +++ + AE + A R+ + R
Sbjct: 353 VFTLNEEAEVLDKWFGRTVILSDRRFTYEEAQQIIETGKGDFAEEVLTLNRLAQRMRKTR 412
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN 399
++GA+ E + K+ P + +Y ++Q + A +L+ E M+L + +A + +
Sbjct: 413 FKRGAVSFQREEAKFKLDAEGKP---LGVYFKEQKE-ANQLIEEFMLLANKQVAEFCGHH 468
Query: 400 NL-------ALPYRGQPQSNID--------VSAFAHL-------------------PEGP 425
+ + YR N + V F ++ +G
Sbjct: 469 KVNGRAVRRTMVYRVHDVPNEEKLEKFRTFVLRFGYVFKADKGRAVAKEMNKLLGQAKGR 528
Query: 426 VRSSAIVKI-MRAAAIDFRKP--VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + I + +RA + F + H L P Y FTSPIRRY D++ H
Sbjct: 529 IEENVISNLAVRAMSKAFYSTDNIGHYGLAFPYYTHFTSPIRRYPDMMVH 578
>gi|296185676|ref|ZP_06854085.1| ribonuclease R [Clostridium carboxidivorans P7]
gi|296049804|gb|EFG89229.1| ribonuclease R [Clostridium carboxidivorans P7]
Length = 678
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 57/339 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL L + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D
Sbjct: 194 EEEYERRKDLRDLTIVTIDGEDAKDLDDAVSLEKLPNGNYHLGVHIADVSNYVKDKNPLD 253
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P+KL+ SL + +T+S + D G + ++++
Sbjct: 254 KEALKRATSVYLIDRVIPMLPKKLSNGICSLNPK--VDRLTLSCFMEIDKTGKVVDHNIT 311
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L E+ + K++ E + + R+Q+GAID
Sbjct: 312 ESIIKTNERMTYTDVTKILRDTDEDVIKRYDYLVDTFKLMEELCGILYKKRIQRGAIDFD 371
Query: 349 TLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I ++ P + +P + A R++ E M++C E IA + + N+ Y
Sbjct: 372 FEECKIILNELGKPIEIKPY-------ERAIANRIIEEFMLVCNETIAEHMFWANMPFVY 424
Query: 406 RGQPQSN----IDVSAFAH--------------------------LPEGPVRSSAIVKIM 435
R + + + + F H E V S+ +++ M
Sbjct: 425 RIHEEPDEEKLMHFNEFVHNLGYVVRMGQEVHPKALQDIVEKVKGKKEETVVSTLLLRSM 484
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A P G GL Y FTSPIRRY DL+ H
Sbjct: 485 MKARY---APECTGHFGLAARYYCHFTSPIRRYPDLIIH 520
>gi|253681987|ref|ZP_04862784.1| ribonuclease R [Clostridium botulinum D str. 1873]
gi|416353469|ref|ZP_11681529.1| ribonuclease R [Clostridium botulinum C str. Stockholm]
gi|253561699|gb|EES91151.1| ribonuclease R [Clostridium botulinum D str. 1873]
gi|338195555|gb|EGO87820.1| ribonuclease R [Clostridium botulinum C str. Stockholm]
Length = 746
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLT + + ID ++A +LDDA+S +L +G + +H+AD + Y++ S D++A+KR
Sbjct: 246 REDLTDVTMVTIDGEDAKDLDDAVSIKKLDNGNYLLGVHIADVSHYVKEKSPLDREALKR 305
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A+T + ++ G + +Y + SIIK
Sbjct: 306 ATSVYLINKVIPMLPKELSNGICSLNPKVNRLAMTCFMEINDKGKVVDYRITKSIIKTNE 365
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L EE E K++ + + + R+ +GAID E++I +
Sbjct: 366 RMTYTDVTKILRDKDEETIEKYKYLYEDFKLMEKLCEILYKKRISRGAIDFEFEESKIIL 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
+ P I++ ++A A R++ E M++C E +A + + L YR + +
Sbjct: 426 DDNGKP---IDVKPYERA-IANRIIEEFMLVCNETVAEHMYWTKLPFVYRIHEDPDEEKL 481
Query: 415 --VSAFAH------LPEGPVRSSAIVKIMRAAA------------IDFRKPVRH-----G 449
FA+ P V A+ +I+ + + K R+ G
Sbjct: 482 QRFREFAYNLGYFIKPNKEVHPKALQEIIESVKGKKEETVVNTLLLRSLKQARYAPQCVG 541
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL+ H
Sbjct: 542 HFGLAAKFYCHFTSPIRRYPDLIIH 566
>gi|422878365|ref|ZP_16924831.1| ribonuclease R [Streptococcus sanguinis SK1059]
gi|422928219|ref|ZP_16961161.1| ribonuclease R [Streptococcus sanguinis ATCC 29667]
gi|422931215|ref|ZP_16964146.1| ribonuclease R [Streptococcus sanguinis SK340]
gi|332367339|gb|EGJ45074.1| ribonuclease R [Streptococcus sanguinis SK1059]
gi|339617364|gb|EGQ21990.1| ribonuclease R [Streptococcus sanguinis ATCC 29667]
gi|339620397|gb|EGQ24967.1| ribonuclease R [Streptococcus sanguinis SK340]
Length = 782
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGCVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK--ILSEAAALRLQ-----WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q + R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGISERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|383115522|ref|ZP_09936278.1| ribonuclease R [Bacteroides sp. D2]
gi|313695072|gb|EFS31907.1| ribonuclease R [Bacteroides sp. D2]
Length = 718
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 151/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + ID +A + DDALS +L+DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKTTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDYKEEV-LTLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEFVGKVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|227891154|ref|ZP_04008959.1| ribonuclease R1 [Lactobacillus salivarius ATCC 11741]
gi|227867028|gb|EEJ74449.1| ribonuclease R1 [Lactobacillus salivarius ATCC 11741]
Length = 799
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|374673000|dbj|BAL50891.1| ribonuclease [Lactococcus lactis subsp. lactis IO-1]
Length = 817
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 158/334 (47%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALEKYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 579
>gi|262282697|ref|ZP_06060465.1| ribonuclease R [Streptococcus sp. 2_1_36FAA]
gi|262261988|gb|EEY80686.1| ribonuclease R [Streptococcus sp. 2_1_36FAA]
Length = 782
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 157/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRVTYSDVNDIIAGDEEKAGQFKAIVPSIDSMVQLHEILENMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ +IM+A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQEIMKAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|311748419|ref|ZP_07722204.1| ribonuclease R [Algoriphagus sp. PR1]
gi|126576931|gb|EAZ81179.1| ribonuclease R [Algoriphagus sp. PR1]
Length = 733
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/343 (26%), Positives = 152/343 (44%), Gaps = 78/343 (22%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+RKD + + ID +A + DDA+S L +G +++ +H+AD T Y++P + +K+A
Sbjct: 268 SRKDFRGVPTFTIDPADAKDFDDAISYQVLPNGNLEIGVHIADVTHYVQPKTALEKEAFN 327
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
R TSV+L T PM PE+L+ SLR E + +T S V D +I ++ + ++I
Sbjct: 328 RATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDREANILKHWIGRTVIH 385
Query: 302 PTYMLTYESATELLHLNLEEE-----AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
YE A E N++ + AEL +L++ A + R GA++ T+E + K+
Sbjct: 386 SDRRFAYEEAQE----NIDNQSGDFFAELTLLNDLAKKVRKKRFNNGAVNFETVEVKFKL 441
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--------------------- 395
+ P + L V+++ D +L+ E M+L + +A +
Sbjct: 442 DDKGTP---LGLIVKERKD-IHKLIEEFMLLANKFVAEFIYKKNKGKDTFVYRTHDFPDM 497
Query: 396 --------------------------GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSS 429
G+ N L +G+P+ N+ L + +RS
Sbjct: 498 ERLDTFSGFAKRFGHEFDIENEQKISGALNKLMDEIQGKPEQNV-------LEQLAIRSM 550
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A K +P H L Y FTSPIRRY D++ H
Sbjct: 551 AKAKYT-------TEPKGHFGLAFAHYTHFTSPIRRYPDMMVH 586
>gi|449120224|ref|ZP_21756610.1| hypothetical protein HMPREF9725_02075 [Treponema denticola H1-T]
gi|449122629|ref|ZP_21758962.1| hypothetical protein HMPREF9727_01722 [Treponema denticola MYR-T]
gi|448947619|gb|EMB28463.1| hypothetical protein HMPREF9727_01722 [Treponema denticola MYR-T]
gi|448948368|gb|EMB29205.1| hypothetical protein HMPREF9725_02075 [Treponema denticola H1-T]
Length = 623
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 142/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG+ ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGK-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV +D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETEDDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|281491445|ref|YP_003353425.1| VacB family exoribonuclease R [Lactococcus lactis subsp. lactis
KF147]
gi|281375163|gb|ADA64676.1| Exoribonuclease R, VacB family [Lactococcus lactis subsp. lactis
KF147]
Length = 817
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 158/334 (47%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTEKMTYDAVNQMIAGDEAALEKYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 579
>gi|422826751|ref|ZP_16874930.1| ribonuclease R [Streptococcus sanguinis SK678]
gi|324994869|gb|EGC26782.1| ribonuclease R [Streptococcus sanguinis SK678]
Length = 782
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 154/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + + ++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKNTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|389580032|ref|ZP_10170059.1| exoribonuclease R [Desulfobacter postgatei 2ac9]
gi|389401667|gb|EIM63889.1| exoribonuclease R [Desulfobacter postgatei 2ac9]
Length = 678
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 143/293 (48%), Gaps = 16/293 (5%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT+L + ID + DDA+S ++G ++ IH+ D YI G D A +R
Sbjct: 290 RKDLTNLPLITIDGQSTQDYDDAISLETTENG-YRLGIHIIDVGAYIRNGDTIDMAARER 348
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S+++P PM P L+ + SL++G++ V+ V ++ I +Y + S+IK
Sbjct: 349 ASSIYMPDDKLPMIPPSLSEDLCSLKEGQLRPGVSTLVHMNRFFEIQDYQIVPSVIKVHQ 408
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
++Y TE +N + + + A LR + RL+ GAI E + + D
Sbjct: 409 QMSY---TEANIVNGKNDPITTLYKMATVLRDK-RLKAGAIQITLPEVNVWL----DENK 460
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQPQSNIDVSAFAHLP 422
IN D+ +P+ LVSEMMIL +A + N++ +R QP+ I L
Sbjct: 461 NINYTKVDRENPSRMLVSEMMILANTLMAEFLKNNDMPGVFRSQAQPKQRIFKGIETQLM 520
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
++ ++ RA +P H LG+P YV TSPIRRY DLL Q+
Sbjct: 521 PNFLQRK---QLSRAVITTHAEP--HAGLGVPAYVTATSPIRRYHDLLTQRQI 568
>gi|406663904|ref|ZP_11071913.1| Ribonuclease R [Cecembia lonarensis LW9]
gi|405551826|gb|EKB47447.1| Ribonuclease R [Cecembia lonarensis LW9]
Length = 731
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 158/351 (45%), Gaps = 58/351 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + NR+D+ + + ID +A + DDA+S +L++G ++ +H+AD T Y++P + ++
Sbjct: 265 DEIKNRRDMRDIPTFTIDPVDAKDFDDAISYRKLENGNYEIGVHIADVTHYVKPKTKLEQ 324
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A R TSV+L T PM PE+L+ SLR E + +T S V D + + +
Sbjct: 325 EAYDRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENADVLNHWIGR 382
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-----ELKILSEAAALRLQWRLQQGAIDTATLET 352
++ YE A E N++++ EL L+E A + R +GAI+ T+E
Sbjct: 383 TVTHSDRRFAYEEAQE----NIDKQEGDFYQELTFLNELAKKIRKRRFDKGAINFETVEV 438
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA---LPYRGQP 409
+ K+ + P + L ++++ D +L+ E M+L +A + N YR
Sbjct: 439 KFKLDDKGIP---LGLMIKERKD-IHKLIEEFMLLANRTVAEFIYNRNKGKDTFVYRIHD 494
Query: 410 QSNID--------VSAFAH---LPEGPVRSSAIVKIMR-------------------AAA 439
+I+ F H + EG S A+ ++M A A
Sbjct: 495 FPDIEKLETFSTFAKRFGHDIKISEGTKISKALNQLMDEIVGKPEQNVLEQLAIRSMAKA 554
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMD-----LLAHY---QVGLQAAAW 482
+P H L Y FTSPIRRY D LL HY G A AW
Sbjct: 555 KYTTEPKSHFGLAFKHYTHFTSPIRRYPDMMVHRLLQHYLDGGKGPDAEAW 605
>gi|270292901|ref|ZP_06199112.1| ribonuclease R [Streptococcus sp. M143]
gi|270278880|gb|EFA24726.1| ribonuclease R [Streptococcus sp. M143]
Length = 779
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 TEKDMEGRLDLRGELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|225870906|ref|YP_002746853.1| exoribonuclease R [Streptococcus equi subsp. equi 4047]
gi|225700310|emb|CAW94592.1| putative exoribonuclease R [Streptococcus equi subsp. equi 4047]
Length = 774
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 131/509 (25%), Positives = 218/509 (42%), Gaps = 84/509 (16%)
Query: 38 LRRNKSNLGFRLPACRSERQFLNRSGSQSCSVHSLVDSVMQE----LVAIRKRLRVFAKV 93
R NK+ GF + F+ R S V++V+++ L A RV A V
Sbjct: 75 FRANKAGFGFLSVDDNEDDIFIGRDDVGYASDGDRVEAVIKKPANRLKATAAEARVVAIV 134
Query: 94 ----KVSSGELLED----------KLENQVLQKGLLLE---FKKDSDRVLLA-VAQRPDG 135
K G ++ D K +NQ +Q+ + + D ++ A + Q P
Sbjct: 135 ERSLKTVVGRVILDDDHPKYAGYIKSKNQRIQQRIYIAKSPIALDGTEIIKADIVQYPKA 194
Query: 136 KKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDI-----SNFLQKA--------EDNL 182
+++ V G C I Q + +E + DI + L +A + +L
Sbjct: 195 GQDYFV----GTVCDIIGHQHDVGIDVLEVLESMDIVSAFPDDVLAEANAIPDAPSDQDL 250
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DL ID +A +LDDA+ RL +G +++ +H+AD + Y+ GS D++A
Sbjct: 251 MGRVDLRKETTITIDGADAKDLDDAIHIKRLANGNVELGVHIADVSYYVTEGSALDREAA 310
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSII 300
RGTSV++ PM PE+L+ SL + +T S ++ D G + +Y + S+I
Sbjct: 311 ARGTSVYVTDRVVPMLPERLSNGICSLNPK--VDRLTQSAIMEIDHQGHVVDYQLCQSVI 368
Query: 301 KPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTATLETR 353
T+ +TY + +++ + E E +++ + ++ R+++GA++ T E R
Sbjct: 369 NTTFRMTYSAVNQMIAGDSEALREFDRIADDVSTMVELHQILEAMRVKRGALNFDTQEAR 428
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP-- 409
I V + P + V Q A R++ M+ E +A + S L YR +P
Sbjct: 429 IIVNDKGMPVDV----VLRQRGVAERMIESFMLAANECVAEHFSRAGLPFIYRVHEEPKA 484
Query: 410 ---QSNID-VSAFAHLPEGP---------------VRSSAIVKIMRAAAIDFRKPVR--- 447
Q+ ID SAF +G V S +++ + + R
Sbjct: 485 EKLQTFIDYASAFGIQIQGTANKISQEALQAFMAKVEGSPGAEVLNMMLLRSMQQARYSE 544
Query: 448 --HGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 545 HNHGHYGLAADYYTHFTSPIRRYPDLLVH 573
>gi|417809990|ref|ZP_12456671.1| ribonuclease R1 [Lactobacillus salivarius GJ-24]
gi|335350914|gb|EGM52410.1| ribonuclease R1 [Lactobacillus salivarius GJ-24]
Length = 799
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 157/336 (46%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+AD + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIADVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTEERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 RGQPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKIMR 436
P + F L PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVVGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|331266542|ref|YP_004326172.1| ribonuclease R [Streptococcus oralis Uo5]
gi|326683214|emb|CBZ00832.1| ribonuclease R [Streptococcus oralis Uo5]
Length = 784
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|224537309|ref|ZP_03677848.1| hypothetical protein BACCELL_02187 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521084|gb|EEF90189.1| hypothetical protein BACCELL_02187 [Bacteroides cellulosilyticus
DSM 14838]
Length = 714
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 158/335 (47%), Gaps = 47/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D ++ + ID +A + DDALS +L+DG +V +H+AD T Y+ GS+
Sbjct: 252 SDEEIAKREDFRNVSTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVTEGSII 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + V +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNINEKGDVKDSRVVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++IK TYE A +++ + +EE L + + A ALR Q R GAI+ E +
Sbjct: 372 TVIKSDRRFTYEEAQQIIETKEGDFKEEI-LMLDTIAKALR-QKRFVAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR--- 406
++ P I++Y + D A +LV E M+L +A G N A PYR
Sbjct: 430 EIDEKGKP---ISVYFKVSKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKAKVFPYRIHD 485
Query: 407 -GQPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRA 437
P+ + DVS + HL E + + ++ M+
Sbjct: 486 LPDPEKLDNLAQFIARFGYKIRTGGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L Y FTSPIRR+ D++ H
Sbjct: 546 ARYSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 579
>gi|419782789|ref|ZP_14308587.1| ribonuclease R [Streptococcus oralis SK610]
gi|383183002|gb|EIC75550.1| ribonuclease R [Streptococcus oralis SK610]
Length = 784
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/334 (29%), Positives = 157/334 (47%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKSLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + S +L YR
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEHFSKFDLPFIYRIH 476
Query: 407 -----GQPQSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G + A+ IMRA + V
Sbjct: 477 EEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQ 536
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 537 ARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|335357554|ref|ZP_08549424.1| ribonuclease R [Lactobacillus animalis KCTC 3501]
Length = 795
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 48/347 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+DLT ++ ID E+ +LDDA+S +L +G + +H+AD + Y+ P + D++A
Sbjct: 259 VGRRDLTDEQMVTIDSIESKDLDDAVSVRKLDNGNYHLGVHIADVSHYVTPNTPLDREAF 318
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P KL+ SL A+T + + G + + + S+IK
Sbjct: 319 ERGTSVYLTDRVIPMIPAKLSNGICSLNPQVERLALTCEMEIDPQGEVVSHEIFPSVIKT 378
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY++ ++L + ++E E + + E + L+ R ++GAI+ E +I
Sbjct: 379 TERMTYKAINKILESDDQKEKERYRELVPMFEEMGELHKILLKMRKRRGAIEFEDTEAKI 438
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQPQ 410
V ++ I++ + ++ + R+V M+ E +A + + +L +P+ P+
Sbjct: 439 IV---DEKGHAIDIQLRERG-ISERMVESFMLAANETVAAH--YKDLHVPFIYRIHETPK 492
Query: 411 SNIDVSAFAHL-----------------------------PEGPVRSSAIVKIMRAAAID 441
S F L PE P+ S +++ M+ A
Sbjct: 493 EEKIKSFFEMLSGLGVEVTGKVSDIQPKMLQKILKKVAGKPEEPMVSVMLLRSMQQAKYS 552
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+P+ H L Y FTSPIRRY DL+ H + A + G+Q
Sbjct: 553 -PEPLGHFGLAAKDYTHFTSPIRRYPDLMVHRMIHYYAENGIGEGSQ 598
>gi|422857998|ref|ZP_16904648.1| ribonuclease R [Streptococcus sanguinis SK1057]
gi|327460969|gb|EGF07302.1| ribonuclease R [Streptococcus sanguinis SK1057]
Length = 782
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++IK + +TY +++ N E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVIKTIFRMTYSDVNDIIAGNQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASTFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|255037464|ref|YP_003088085.1| ribonuclease R [Dyadobacter fermentans DSM 18053]
gi|254950220|gb|ACT94920.1| ribonuclease R [Dyadobacter fermentans DSM 18053]
Length = 795
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 156/330 (47%), Gaps = 44/330 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R+D+ + + ID +A + DDALS L + ++V +H+AD + Y+ PG+ +K+
Sbjct: 279 DLAKRRDIRDVLTFTIDPVDAKDFDDALSVRYLDEDVVEVGVHIADVSHYVLPGTELEKE 338
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A++R TSV+L T PM PEKL+ SLR E A + + S G + + ++I
Sbjct: 339 ALRRATSVYLVDRTVPMLPEKLSNNLCSLRPNEDRLAFSAIFEITSKGKLLKEWFGRTVI 398
Query: 301 KPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
TYE A +L + EL L++ A + + R ++GAI+ T E R ++
Sbjct: 399 HSDRRFTYEEAQAVLDSGEGDFPKELDTLNKLAKIFRKERFKKGAINFETPEVRFRL--- 455
Query: 360 EDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATY----------------------- 395
DPE + +Y +++ D + +L+ E M+L + +A Y
Sbjct: 456 -DPEGRPLGIYTKERHD-SNKLIEEFMLLANKRVAEYVYSLSKGEDKNTMVYRIHEAPDP 513
Query: 396 ---GSFNN----LALPYRGQPQSNIDVSAFAHL------PEGPVRSSAIVKIMRAAAIDF 442
+F N L L + +S I S A L PE + S V+ M A A
Sbjct: 514 DRLQTFANFVAKLGLKLEVEEESKIAKSMNAMLAKVEGKPEQNLIESLAVRTM-AKARYS 572
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++AH
Sbjct: 573 TEDLGHFGLAFRRYSHFTSPIRRYPDVMAH 602
>gi|418038055|ref|ZP_12676404.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|354693733|gb|EHE93466.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
Length = 817
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 579
>gi|312792712|ref|YP_004025635.1| ribonuclease r [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179852|gb|ADQ40022.1| ribonuclease R [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 716
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 162/339 (47%), Gaps = 54/339 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++L R DL ++ ID ++A + DDA+S +L +G + +H+AD + Y++P +
Sbjct: 245 TEEDLEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 DKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKQGNVVKHDI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA-----------ELKILSEAAALRLQWRLQQGA 344
S+I+ +TY + T++L EE+ +L+++ E A + + R+++GA
Sbjct: 363 FESVIRSKERMTYTNVTKILK---EEDKDLLKRYEHIREDLELMRELALILREKRMKRGA 419
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ET++ + P ++ + + +++ E M++C E +A + + N+
Sbjct: 420 LDFDFDETKVILDKNGKPIDVVRY----ELTISNKIIEEFMLICNETVANHFYWLNVPFL 475
Query: 405 YRGQPQSNID-VSAFAHL------------------------------PEGPVRSSAIVK 433
YR + +I+ + FA PE V + ++
Sbjct: 476 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTPEERVIHTLCLR 535
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ A + + H L Y FTSPIRRY DL+ H
Sbjct: 536 SLKKARY-CEENLGHFGLSTEYYCHFTSPIRRYPDLVIH 573
>gi|225849742|ref|YP_002729976.1| ribonuclease R [Persephonella marina EX-H1]
gi|225646115|gb|ACO04301.1| ribonuclease R [Persephonella marina EX-H1]
Length = 704
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 153/325 (47%), Gaps = 41/325 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLT + ID + A + DDA+ A+ + ++++H+AD + Y++ GS D++A +
Sbjct: 242 NRRDLTDQICFTIDPESARDHDDAV-AIEKEGNLYRLFVHIADVSYYVKEGSAIDREAFE 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG + +LP M PE+LA E SLR E A T ++++ G + +Y + S+I
Sbjct: 301 RGNTYYLPEMALHMLPERLAAELCSLRPDEKKYAFTCEMLINRAGKVVDYDIYESVIISK 360
Query: 304 YMLTYESATELLHLN--LEEE-----AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
LTY+ A L+ + LE++ L+ + E A + ++ + ++G+ID E++I
Sbjct: 361 AKLTYDEALRLIVGDPALEKKYPDLVKPLRYMEELAKILMKAKEKRGSIDFDMPESKILF 420
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
DP ++ + A R++ E MI+ E +A + YR + ++D V
Sbjct: 421 TETGDPYDVVPY----ERHLAHRIIEEFMIIANETVARFMEEKGYPFIYRTHEEPDLDKV 476
Query: 416 SAFAHLPEG---------PVRSSAIVKIMRAA------------AIDFRKPVRH-----G 449
F L G + I KI+ A A+ K ++ G
Sbjct: 477 IKFVDLVAGLGYDVSYPEKITPKFIQKIIEKATGTPEENLIRFMALRTMKQAKYTVENIG 536
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY D+ H
Sbjct: 537 HFGLASDCYTHFTSPIRRYADINVH 561
>gi|15672924|ref|NP_267098.1| ribonuclease [Lactococcus lactis subsp. lactis Il1403]
gi|18202798|sp|Q9CH00.1|RNR1_LACLA RecName: Full=Ribonuclease R 1; Short=RNase R 1; AltName: Full=VacB
protein homolog 1
gi|12723878|gb|AAK05040.1|AE006328_8 ribonuclease [Lactococcus lactis subsp. lactis Il1403]
Length = 817
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 579
>gi|422865059|ref|ZP_16911684.1| ribonuclease R [Streptococcus sanguinis SK1058]
gi|327490243|gb|EGF22031.1| ribonuclease R [Streptococcus sanguinis SK1058]
Length = 782
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVQLHEILEIMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S ++ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQSLQDIMEAVKDQPYEEVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|449115717|ref|ZP_21752177.1| hypothetical protein HMPREF9726_00162 [Treponema denticola H-22]
gi|448955203|gb|EMB35970.1| hypothetical protein HMPREF9726_00162 [Treponema denticola H-22]
Length = 623
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 141/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GAI E +IKV +D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAISIDMPEVQIKVETEDDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|187932190|ref|YP_001892175.1| ribonuclease II family protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187713099|gb|ACD31396.1| ribonuclease II family protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 618
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 145/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGKYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|162447270|ref|YP_001620402.1| 3'-5' exoribonuclease [Acholeplasma laidlawii PG-8A]
gi|161985377|gb|ABX81026.1| 3'-5' exoribonuclease, RNase R/RNase II family [Acholeplasma
laidlawii PG-8A]
Length = 728
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 150/324 (46%), Gaps = 42/324 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+T V ID +A +LDDA+S L++G K+ +H+AD + +++ GS ++ A R
Sbjct: 220 RRDITDKLVVTIDGADAKDLDDAISLEYLENGNFKLGVHIADVSYFVKEGSYLNEAAYNR 279
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL E +T + L+ D + Y + SII+ +
Sbjct: 280 ATSVYLADRVIPMIPHGLSNDLCSLNPNEDKYTITCEMELNPDIEVVNYDIYASIIQSKH 339
Query: 305 MLTYESATELLHLNL-----EEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
LTY +L + E + L ++E A Q R ++GAID + E + +
Sbjct: 340 RLTYHDVNQLFKEHQSTGFKEVDKMLFTMNEIAQKLKQIRTKRGAIDFNSTELKFVLDVN 399
Query: 360 EDPEPIINLYVEDQ-ADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQPQSN---- 412
D L VE++ D A L+ MIL E ++ + FN+L YR +P S
Sbjct: 400 GDV-----LGVEERTTDEAEALIESFMILANETVSRHFFFNDLPGIYRVHEKPTSEKLDI 454
Query: 413 -----------IDVSA-------------FAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+D SA A P + + +++ M+ AI KP+ H
Sbjct: 455 AFESSAKLGFRVDQSAKSSAQKLQRLTKKVAQTPYEYIINMILLRSMQ-KAIYSEKPIGH 513
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAH 472
L Y FTSPIRRY DLL H
Sbjct: 514 FGLASAYYSHFTSPIRRYPDLLLH 537
>gi|333997539|ref|YP_004530151.1| ribonuclease II family protein [Treponema primitia ZAS-2]
gi|333739006|gb|AEF84496.1| ribonuclease II family protein [Treponema primitia ZAS-2]
Length = 641
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 146/302 (48%), Gaps = 20/302 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMR-LQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL+ L+ YAID + + DDA+S + G +Y+HVADP I GS D +A
Sbjct: 238 RTDLSGLEAYAIDSPWSHDPDDAVSLEKHPAGGPDTLYVHVADPAASILSGSPGDLEARG 297
Query: 244 RGTSVFLPTATYPMFPEK-LAMEGMSLRQ-------GEVCNAVTVSVVLHSDGSIAEYSV 295
RG +++LP T M E+ L++ + L E+ A++ ++L DGSI E +
Sbjct: 298 RGATLYLPEGTARMLAEESLSLYALGLSSIPDTSPATELSPALSFKLLLGDDGSILETDI 357
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+I+ T L+Y A + + L L + A L+ R+ GA+ ET +
Sbjct: 358 FPSLIRVT-RLSYAGADA--QVAGDANPVLAGLFQIAERNLRRRMAAGAVVIELPETHMS 414
Query: 356 VANPEDP--EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
V PE P + +++++ + A +V E M+L GE A + L PY Q ++
Sbjct: 415 VNLPEKPGADGTVSIHLLENYKSA-DMVRECMLLAGEGAAGWALQKRLPFPYVSQETGDL 473
Query: 414 DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHY 473
S G S + + MR + KP H LGL Y Q TSP+RRY DLLAH
Sbjct: 474 PSSPLP----GMAGSYQLRRCMRPRTLSV-KPGLHWGLGLDQYTQVTSPLRRYTDLLAHQ 528
Query: 474 QV 475
Q+
Sbjct: 529 QI 530
>gi|333029457|ref|ZP_08457518.1| ribonuclease R [Bacteroides coprosuis DSM 18011]
gi|332740054|gb|EGJ70536.1| ribonuclease R [Bacteroides coprosuis DSM 18011]
Length = 723
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 41/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R+D ++ + ID +A + DDALS +L++G +V +H+AD T Y++ G + D
Sbjct: 253 KDEIEKREDFRNIATFTIDPKDAKDFDDALSIRQLKNGNWEVGVHIADVTHYVQEGDIID 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A KR TS++L T PM PE+L SLR E A +V L G + V ++
Sbjct: 313 QEAEKRATSIYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFELDEAGEVKHSHVAHT 372
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+IK TYE A ++ E A E+ +L+ A + R GA++ +E + ++
Sbjct: 373 VIKSDRRFTYEEAQAIIESKEGEYATEILMLNHLAQELRKLRFSDGALNFERVEVKFEID 432
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNN----LALPYR----GQ 408
P I++Y + ++ A +L+ E M+L +A G + LPYR
Sbjct: 433 EKGKP---ISVYFK-ESKEANKLIEEFMLLANRTVAEKVGKVGHNKKAKVLPYRIHDLPD 488
Query: 409 PQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRKP 445
P ++S F +R+S +++ + A+ +
Sbjct: 489 PDKLDNLSQFIARFGYKIRTSGSKSTVAHSLNVLLEDIQGKKEANLIETISIRAMQKARY 548
Query: 446 VRHGV----LGLPGYVQFTSPIRRYMDLLAH 472
H + L Y FTSPIRRY D++ H
Sbjct: 549 STHNIGHYGLAFDYYTHFTSPIRRYPDMMVH 579
>gi|188586620|ref|YP_001918165.1| ribonuclease R [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351307|gb|ACB85577.1| ribonuclease R [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 709
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 151/332 (45%), Gaps = 52/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+ + L ID +A +LDDA+S +L +G +++ +H+AD + Y+ G+ DK+A +
Sbjct: 246 GRELIQGLPTVTIDGSDAKDLDDAVSLEKLDNGNMELGVHIADVSYYVREGTPLDKEARQ 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P KL+ SL G ++ V L +G IA Y + S+IK
Sbjct: 306 RGTSVYLVDRVLPMLPPKLSNNICSLNPGVERLTMSAFVELTEEGDIANYRLTPSVIKSN 365
Query: 304 YMLTYESATELLHLNLEEEA----------ELKILSEAAALRLQWRLQQGAIDTATLETR 353
Y LTYE EL + E E E+K +SE R R +GAID E
Sbjct: 366 YRLTYEEVNELFDGSKEIEEKYPDVAWMLFEMKTISEKLRER---RFDEGAIDFEFDEPV 422
Query: 354 IKVANPEDPEPIINLYVEDQA-DPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
+ + + PE VE +A A +L+ E M+L +A + ++ YR Q +
Sbjct: 423 VVLDDQGKPES-----VEKRARGSAEKLIEEFMLLANRVVAEHHYNLDMPFIYRVHEQPD 477
Query: 413 ID-VSAFAHL----------PEG----PVR-----------------SSAIVKIMRAAAI 440
+ VS F PEG P+ S+ +++ M+ A
Sbjct: 478 DEKVSTFREFASKFGYYLPKPEGEEIYPIEFQKVLEEAKDTREERAISTMMLRSMKQARY 537
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 538 -AAESLGHFGLSFQYYTHFTSPIRRYPDLVVH 568
>gi|56707413|ref|YP_169309.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110669884|ref|YP_666441.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|254370890|ref|ZP_04986895.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|379716606|ref|YP_005304942.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|379725289|ref|YP_005317475.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TI0902]
gi|385794021|ref|YP_005830427.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis NE061598]
gi|421754880|ref|ZP_16191840.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700075]
gi|56603905|emb|CAG44890.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320217|emb|CAL08273.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151569133|gb|EDN34787.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis FSC033]
gi|282158556|gb|ADA77947.1| Ribonuclease II family protein [Francisella tularensis subsp.
tularensis NE061598]
gi|377826738|gb|AFB79986.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TI0902]
gi|377828283|gb|AFB78362.1| RNase R-related protein [Francisella tularensis subsp. tularensis
TIGB03]
gi|409089753|gb|EKM89787.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700075]
Length = 618
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 145/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSKKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|429204716|ref|ZP_19195999.1| ribonuclease R 1 [Lactobacillus saerimneri 30a]
gi|428146939|gb|EKW99172.1| ribonuclease R 1 [Lactobacillus saerimneri 30a]
Length = 797
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 166/348 (47%), Gaps = 56/348 (16%)
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
KDI + + AE R+DLT K+ ID E+ +LDDA++ +L +G + +H+AD +
Sbjct: 246 KDIPDEVTPAEKE--GRRDLTDQKLVTIDSIESKDLDDAVNVWQLPNGNYHLGVHIADVS 303
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y+ PG+ D++A +RGTSV+L PM P KL+ SL A+T + + G
Sbjct: 304 HYVTPGTPLDREAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEITPQG 363
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK--------ILSEAAALR---LQ 337
+ + + S+IK T +TY + ++L ++A+LK + + AL L+
Sbjct: 364 EVVAHEIFPSVIKSTERMTYVAINKILE---SDDAKLKERYADLVPMFQDMKALHKILLK 420
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS 397
R ++GAI+ E +I V P +++ + ++ + R+V M+ E +A +
Sbjct: 421 MRKKRGAIEFEDTEAKIIVDEQGHP---VDIQLRERGT-SERMVESFMLAANETVAKH-- 474
Query: 398 FNNLALPY----RGQPQS-------------NIDVSA----------------FAHLPEG 424
FN+L +P+ +P+ I+V A PE
Sbjct: 475 FNDLHVPFLYRIHEKPKDEKIKSFYEVLASFGIEVHGKIADLEPKVLQQILKKVAGKPEE 534
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S+ +++ M+ A +P+ H L Y FTSPIRRY DL+ H
Sbjct: 535 PMISTLMLRSMQQAKYS-DQPLGHFGLAAVDYTHFTSPIRRYPDLMVH 581
>gi|331268763|ref|YP_004395255.1| ribonuclease R [Clostridium botulinum BKT015925]
gi|329125313|gb|AEB75258.1| ribonuclease R [Clostridium botulinum BKT015925]
Length = 746
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 157/326 (48%), Gaps = 41/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLT + + ID ++A +LDDA+S +L +G + +H+AD + Y++ + D++A+K
Sbjct: 245 SREDLTDVTMVTIDGEDAKDLDDAVSIKKLDNGNYLLGVHIADVSHYVKEKNPLDREALK 304
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P++L+ SL A+T + ++ G + +Y + SIIK
Sbjct: 305 RATSVYLINKVIPMLPKELSNGICSLNPKVNRLAMTCFMEINDKGKVVDYRITKSIIKTN 364
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY T++L EE E K++ + + + R+ +GAID E++I
Sbjct: 365 ERMTYTDVTKILRDKDEETIEKYKDLYEDFKLMEKLCEILYKKRISRGAIDFEFEESKII 424
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ + P I++ ++A A R++ E M++C E +A + + L YR + +
Sbjct: 425 LDDNGKP---IDVKPYERA-IANRIIEEFMLVCNETVAEHMYWTKLPFVYRIHEDPDEEK 480
Query: 415 ---VSAFAH------LPEGPVRSSAIVKIMRAAA------------IDFRKPVRH----- 448
FA+ P V A+ +I+ + + K R+
Sbjct: 481 LQRFREFAYNLGYFIKPSKEVHPKALQEIIESVKGKKEETVVNTLLLRSLKQARYAPQCV 540
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 541 GHFGLAAKFYCHFTSPIRRYPDLIIH 566
>gi|385830478|ref|YP_005868291.1| VacB family exoribonuclease R [Lactococcus lactis subsp. lactis
CV56]
gi|326406486|gb|ADZ63557.1| VacB family exoribonuclease R [Lactococcus lactis subsp. lactis
CV56]
Length = 762
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 246 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNPR--INRLTQSCVMEISPEGRVINYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 572
>gi|116748174|ref|YP_844861.1| exoribonuclease II [Syntrophobacter fumaroxidans MPOB]
gi|116697238|gb|ABK16426.1| Exoribonuclease II [Syntrophobacter fumaroxidans MPOB]
Length = 680
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 142/292 (48%), Gaps = 10/292 (3%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL HL +D + DDALS L R +V IH+AD +++ G + D++A +
Sbjct: 283 QRRDLRHLDCLTVDSALTRDYDDALSFRALDGNRFEVGIHIADAAEFVLKGDVLDREAER 342
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LP A M P L+ + SL+ GE A++ V+H DG+IA + +S I+
Sbjct: 343 RATSIYLPDARISMLPVPLSEDLCSLKAGEDRPALSFLFVVHGDGTIAGSEIVSSTIRVA 402
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTYE E + L+ + A L L A LR RL +GA E ++ V +
Sbjct: 403 EQLTYEEVNERIRLD-DSPAALSAL--AMKLR-NARLDRGASILPLPEIQVYV----NSA 454
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
+I + ++ P+ +VSE MI A A + + +L +RGQ + + F
Sbjct: 455 GMIQVSRYEKETPSQIMVSEWMIAANAAAAAFLAERDLPSVFRGQGECKQETD-FTQSEH 513
Query: 424 GPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
R ++ A +D R +H L L Y TSPIRRY DL+ Q+
Sbjct: 514 ELFRIYRQRRLYARAELDTRSK-QHCSLALEHYTTVTSPIRRYTDLVVQRQI 564
>gi|62261367|gb|AAX77984.1| unknown protein [synthetic construct]
Length = 653
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 21/293 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 258 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSKKNKMWVHIADPSSSISFGDEVDLQARAR 314
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + L EV AV+V + G I + + S IK T
Sbjct: 315 GSNLYVPEQIVMMLPPQ-ATAKLGLGLQEVSPAVSVGFRIDEQGDIHDIEICFSNIKVT- 372
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDPE 363
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 373 RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK---- 423
Query: 364 PIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 424 ---NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENID 480
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 481 SIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQL 531
>gi|337288188|ref|YP_004627660.1| ribonuclease II [Thermodesulfobacterium sp. OPB45]
gi|334901926|gb|AEH22732.1| ribonuclease II [Thermodesulfobacterium geofontis OPF15]
Length = 661
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 18/313 (5%)
Query: 166 FDHKDI--SNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
F K++ + + K E + R+DLTHL +D +E + DDALS +D I +Y+H
Sbjct: 253 FSEKELKEAELIVKTEISKEEREDLTHLYTVTVDAEETQDFDDALSFEEKEDKYI-LYVH 311
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+A+ +++PGS + A++R +++LP YPM P L+ E SL++GE+ ++T +
Sbjct: 312 IAEVADFLKPGSALWEGALERACTLYLPDGIYPMLPFSLSHEKFSLKKGELKGSLTFKIS 371
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQG 343
L +I + S+I+ LTYE ELL + + +I R +
Sbjct: 372 LDKSYNILSFEPFLSLIEVKERLTYEKVDELLTKDPFWQKIYEIFMHFKKKREEKEFY-- 429
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVED-QADPAMRLVSEMMILCGEAIATYGSFNNLA 402
A+ ++ R++ P + V+ + P+ L++E MIL A + N +
Sbjct: 430 AVFLPEVQVRVR--------PDGKIVVKKVEMTPSRHLIAEAMILVNTLAAEFLYQNQIP 481
Query: 403 LPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSP 462
YR QP+ + + E +K + + + P H LGL Y TSP
Sbjct: 482 AIYRSQPKP---LEIIENREENLYLKLLQLKYLAKSELRL-SPAYHFGLGLEYYTTLTSP 537
Query: 463 IRRYMDLLAHYQV 475
IRR++DLL YQ+
Sbjct: 538 IRRFLDLLIQYQL 550
>gi|189502641|ref|YP_001958358.1| hypothetical protein Aasi_1319 [Candidatus Amoebophilus asiaticus
5a2]
gi|189498082|gb|ACE06629.1| hypothetical protein Aasi_1319 [Candidatus Amoebophilus asiaticus
5a2]
Length = 718
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 47/327 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD + ID ++A + DDALS L +G I+V +H+AD + Y++ SL D++A +R
Sbjct: 265 RKDFREVFTITIDPEDAKDFDDALSLKILPNGHIEVGVHIADVSYYVQENSLVDQEAFER 324
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L T PM PE+L+ E SL+ E A + L GS+ ++I
Sbjct: 325 GTSVYLVDRTIPMIPERLSNELCSLKPHEDRPAFSAVFELDKQGSLHHEWFGETVIHSDQ 384
Query: 305 MLTYESA----TELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
L+YE A T+ H E+ L L A LR R + GAI+ T + ++
Sbjct: 385 RLSYEEAQQAITQPTHSLHEQITTLNNL--AKKLRAD-RFKSGAINFDTPSVKFQLDKQG 441
Query: 361 DPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------------- 395
P I+ ED + RL+ E M+L + +A +
Sbjct: 442 RPLSILPKVSED----SHRLIEEFMLLANKRVALHVRRMKQGKQFPTFVYRTHDQPNLER 497
Query: 396 -GSF----NNLALPYRGQPQS-----NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
G F + +PQ N+ A PE + + +++M A A+ +
Sbjct: 498 LGDFALFVKQFGYSIKAEPQEIAQSINVLSEGLAGKPEAHIIQTLAIRLM-AKALYTTEA 556
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DLL H
Sbjct: 557 KPHFGLAFEHYTHFTSPIRRYPDLLVH 583
>gi|387885850|ref|YP_006316149.1| ribonuclease II family protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386870666|gb|AFJ42673.1| ribonuclease II family protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 624
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 145/295 (49%), Gaps = 25/295 (8%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHL YAID + +++ DDA+S Q+ K+++H+ADP+ I G D +A R
Sbjct: 238 RVDLTHLTAYAIDDEGSNDPDDAISWDTQQN---KMWVHIADPSSSINFGDEVDLEARAR 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G+++++P M P + A + + L EV A++V L+ I + + S IK T
Sbjct: 295 GSNLYVPEHIITMLPPQ-ATQKLGLGLQEVSPALSVGFRLNESSDIHDIEICFSNIKVT- 352
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE- 363
+YE E + EL + A RL +GA++ E +I + + + +
Sbjct: 353 RYSYEFVEENIS-----ALELGDIGAYAKYFTNKRLTKGAVELDFPEIKISLDSDNNVKL 407
Query: 364 ---PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAH 420
P +N + LV + M++ G AI + NN+ +P+ QP+ +++ +
Sbjct: 408 TDLPRLN---------SRTLVRDTMLMAGVAIGQFCKENNICVPFSTQPEHDLEQDDLEN 458
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ + K+ R +P H +GL YVQ TSP+RRY+DLL HYQ+
Sbjct: 459 IDSIADMFATRKKLQRGKYS--TEPDVHAGMGLDSYVQVTSPLRRYLDLLVHYQL 511
>gi|423070304|ref|ZP_17059080.1| ribonuclease R [Streptococcus intermedius F0413]
gi|355366625|gb|EHG14343.1| ribonuclease R [Streptococcus intermedius F0413]
Length = 779
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + +++V
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTV 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
++IK T+ +TY +++ + E+ K ++E A+ R ++GA++
Sbjct: 360 TQTVIKTTFRMTYSDVNDIITGDKEKRTAFKTIVPSIEQMTELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P II Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGVAERMIESFMLVANETVAEHFARLNLPFLYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
+G GL Y FTSPIRRY DLL H V
Sbjct: 536 ARYSEHNYGHYGLAAGFYTHFTSPIRRYPDLLVHRMV 572
>gi|194015352|ref|ZP_03053968.1| ribonuclease R [Bacillus pumilus ATCC 7061]
gi|194012756|gb|EDW22322.1| ribonuclease R [Bacillus pumilus ATCC 7061]
Length = 779
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 44/333 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +V+ +G + ++ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDRNGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEE---EAELKI-----LSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L EE + EL + + + A + R+++GA+D
Sbjct: 362 VIKTTERMTYTDVNKILVDQDEELIDKYELLVPMFQEMEKLAEILRDKRMERGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAAKDVVVRERSVAEKLIEEFMLVANETVAEHFHWLNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V + +++ M+ A
Sbjct: 478 PNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY DL+ H
Sbjct: 538 YD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|387823702|ref|YP_005823173.1| ribonuclease II family protein [Francisella cf. novicida 3523]
gi|328675301|gb|AEB27976.1| ribonuclease II family protein [Francisella cf. novicida 3523]
Length = 618
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 151/299 (50%), Gaps = 33/299 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT+LK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTYLKAYAIDDEGSNDPDDAIS---WDTQKNKMWVHIADPSSSINFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V L G I++ + S IK T
Sbjct: 289 GSNLYVPEKIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRLDDKGDISDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
+YE E + + EL + A RL +GA++ E +I + + ++ +
Sbjct: 347 -RYSYEFVEENI-----DALELGDIVNYAKYFTDKRLSKGAVELDFPEIKISLDDNKNVK 400
Query: 364 ----PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
P +N + LV + M++ G A+A + NN+++P+ QP+ +++
Sbjct: 401 LTDLPRLN---------SRTLVRDTMLMAGVAVAQFCIENNISVPFSTQPEHDLEQDGLE 451
Query: 420 HLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV---LGLPGYVQFTSPIRRYMDLLAHYQV 475
+L + K+ R + +H + +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 452 NLDSIADMFATRKKLQRG-----KYSTQHSIHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|256838702|ref|ZP_05544212.1| ribonuclease R [Parabacteroides sp. D13]
gi|256739621|gb|EEU52945.1| ribonuclease R [Parabacteroides sp. D13]
Length = 727
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 271 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 331 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 390
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 391 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 450
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 451 ---VRVYFKISKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 501
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 502 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 561
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++ H
Sbjct: 562 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVH 592
>gi|134302635|ref|YP_001122604.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421752529|ref|ZP_16189553.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis AS_713]
gi|421754396|ref|ZP_16191369.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 831]
gi|421758127|ref|ZP_16194985.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700103]
gi|421759954|ref|ZP_16196778.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70102010]
gi|424675280|ref|ZP_18112187.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70001275]
gi|134050412|gb|ABO47483.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409084682|gb|EKM84849.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 831]
gi|409084957|gb|EKM85114.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis AS_713]
gi|409089871|gb|EKM89903.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70102010]
gi|409090384|gb|EKM90403.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 80700103]
gi|417434035|gb|EKT89007.1| ribonuclease II family protein [Francisella tularensis subsp.
tularensis 70001275]
Length = 618
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 145/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H+ADP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHIADPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|422875979|ref|ZP_16922449.1| ribonuclease R [Streptococcus sanguinis SK1056]
gi|332362415|gb|EGJ40215.1| ribonuclease R [Streptococcus sanguinis SK1056]
Length = 782
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDEEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGVRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|125624388|ref|YP_001032871.1| exoribonuclease R [Lactococcus lactis subsp. cremoris MG1363]
gi|124493196|emb|CAL98161.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
MG1363]
Length = 819
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 156/334 (46%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 253 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 370
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ + LE+ A++ KI+ E + R Q+GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 579
>gi|419780225|ref|ZP_14306075.1| ribonuclease R [Streptococcus oralis SK100]
gi|383185384|gb|EIC77880.1| ribonuclease R [Streptococcus oralis SK100]
Length = 784
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|317474743|ref|ZP_07934017.1| ribonuclease R [Bacteroides eggerthii 1_2_48FAA]
gi|316909424|gb|EFV31104.1| ribonuclease R [Bacteroides eggerthii 1_2_48FAA]
Length = 719
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 148/327 (45%), Gaps = 45/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS +L+D +V +H+AD T Y+ GS+ DK+A KR
Sbjct: 263 REDFRNITTFTIDPKDAKDFDDALSVRKLKDNLWEVGVHIADVTHYVTEGSIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G I + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSAIFEMTDKGEIKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ + A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDALAKILR-EKRFAAGAINFDRYEVKFEIDEKGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQSN 412
P I++Y ++ D A +LV E M+L +A S PYR P+
Sbjct: 441 P---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKSKKPKVFPYRIHDLPDPEKL 496
Query: 413 IDVSAFAHLPEGPVRSSAIV--------------------KIMRAAAIDFRKPVRHGV-- 450
++S F +R+S ++ +I + R+ V
Sbjct: 497 DNLSQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAH 472
L Y FTSPIRRY D+L H
Sbjct: 557 IGHYGLSFDYYTHFTSPIRRYPDMLVH 583
>gi|255012826|ref|ZP_05284952.1| ribonuclease R [Bacteroides sp. 2_1_7]
gi|410102247|ref|ZP_11297174.1| ribonuclease R [Parabacteroides sp. D25]
gi|409238969|gb|EKN31757.1| ribonuclease R [Parabacteroides sp. D25]
Length = 728
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++ H
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVH 593
>gi|325283960|ref|YP_004256501.1| ribonuclease II [Deinococcus proteolyticus MRP]
gi|324315769|gb|ADY26884.1| ribonuclease II [Deinococcus proteolyticus MRP]
Length = 481
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 141/294 (47%), Gaps = 21/294 (7%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLTHL +AID + + DDALS L++G ++++HVAD + PGS D++A
Sbjct: 100 ERLDLTHLPAFAIDDEGNQDPDDALSVEELEEGLTRLWVHVADVAALVTPGSPLDREARA 159
Query: 244 RGTSVFLPTATYPMFPEKLAME-GMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
RG +++LP T M PE L + G+ L + A+++++ L ++G+ V + ++
Sbjct: 160 RGATLYLPDRTIHMLPEALVQQAGLGL--SDTSPALSIALDLDANGNADAVEVHLTRVR- 216
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
L+Y A + + +E L+E A + R Q+GA+ E R+K
Sbjct: 217 VQRLSYGQAQAMFE---QGHSEFTRLAELAGVSRDIRSQEGAVSIDLPEVRVKAD----- 268
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
V P MR +V E M L G A A Y L +P+ Q + +VS +
Sbjct: 269 --AAGAQVLPLPRPEMRAVVQECMTLAGWAAAIYADDFELPIPFATQDPPHREVSGDSMT 326
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
R + ++A P H +GL Y Q TSP+RRY+DL+ H Q+
Sbjct: 327 AHWARRKTLARTRFQSA------PGAHAGMGLDLYTQATSPMRRYLDLVVHQQL 374
>gi|256004830|ref|ZP_05429804.1| ribonuclease R [Clostridium thermocellum DSM 2360]
gi|385779413|ref|YP_005688578.1| ribonuclease R [Clostridium thermocellum DSM 1313]
gi|419722565|ref|ZP_14249705.1| ribonuclease R [Clostridium thermocellum AD2]
gi|419725555|ref|ZP_14252596.1| ribonuclease R [Clostridium thermocellum YS]
gi|255991140|gb|EEU01248.1| ribonuclease R [Clostridium thermocellum DSM 2360]
gi|316941093|gb|ADU75127.1| ribonuclease R [Clostridium thermocellum DSM 1313]
gi|380771125|gb|EIC05004.1| ribonuclease R [Clostridium thermocellum YS]
gi|380781332|gb|EIC10990.1| ribonuclease R [Clostridium thermocellum AD2]
Length = 757
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED + R+DL L + ID ++A +LDDA+S RL +G ++ +H+AD + Y++ GS
Sbjct: 239 TEDMIKGRRDLRDLTMVTIDGEDAKDLDDAVSIERLPNGNYRLGVHIADVSYYVKEGSPL 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KRGTSV+L PM P++L+ SL A TV + + G + ++ +
Sbjct: 299 DKEALKRGTSVYLVDRVIPMLPKELSNGICSLNPKVDRLAFTVMMEIDKSGRVVDHEIFE 358
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I +TY ++L N E E + E A + + R+ +GAID
Sbjct: 359 SVINVNERMTYTDVYKILEENDEGLIERYKYLCDTFHTMKELALILRKKRMDRGAIDFNF 418
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E +I + E PI + Y + A ++ E M++C E +A + + N YR
Sbjct: 419 DEAKIVL--DEKGVPIEVKRY---EMTIANNIIEEFMLVCNETVAEHFFWTNTPFVYRIH 473
Query: 409 PQSNID----VSAFAH--------------------------LPEGPVRSSAIVKIMRAA 438
+ D S F H E + S+ +++ ++ A
Sbjct: 474 EDPDPDKIEAFSEFVHNLGYTLKGINKIHPKALQDVLEKARGTKEETIISTVMLRSLQKA 533
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ G GL Y FTSPIRRY DL+ H
Sbjct: 534 RYSH---INSGHFGLAAKYYCHFTSPIRRYPDLIIH 566
>gi|335029875|ref|ZP_08523377.1| ribonuclease R [Streptococcus infantis SK1076]
gi|334268017|gb|EGL86467.1| ribonuclease R [Streptococcus infantis SK1076]
Length = 780
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R DL + ID +A +LDDA+ L++G ++ +H+AD + Y++ GS
Sbjct: 243 SEADLEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNFELGVHIADVSYYVKEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + YS+
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVRNYSI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK +Y +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSYRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILEDMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGTAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|449126110|ref|ZP_21762404.1| hypothetical protein HMPREF9723_02448 [Treponema denticola OTK]
gi|448938824|gb|EMB19751.1| hypothetical protein HMPREF9723_02448 [Treponema denticola OTK]
Length = 623
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 141/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
++LTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 ENLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGISRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E LN A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-KLN----ANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
IN Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FINPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|301307807|ref|ZP_07213763.1| ribonuclease R [Bacteroides sp. 20_3]
gi|423339600|ref|ZP_17317340.1| ribonuclease R [Parabacteroides distasonis CL09T03C24]
gi|300834150|gb|EFK64764.1| ribonuclease R [Bacteroides sp. 20_3]
gi|409230254|gb|EKN23121.1| ribonuclease R [Parabacteroides distasonis CL09T03C24]
Length = 728
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++ H
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVH 593
>gi|389854753|ref|YP_006356997.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
NZ9000]
gi|300071175|gb|ADJ60575.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 812
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 156/334 (46%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELLHLN---LEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ + LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGDKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLPIEI----RKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 572
>gi|406576446|ref|ZP_11052075.1| exoribonuclease R [Streptococcus sp. GMD6S]
gi|404461453|gb|EKA07384.1| exoribonuclease R [Streptococcus sp. GMD6S]
Length = 784
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMGGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSL--NPQVDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|298374284|ref|ZP_06984242.1| ribonuclease R [Bacteroides sp. 3_1_19]
gi|298268652|gb|EFI10307.1| ribonuclease R [Bacteroides sp. 3_1_19]
Length = 728
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++ H
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVH 593
>gi|419778992|ref|ZP_14304873.1| ribonuclease R [Streptococcus oralis SK10]
gi|383186756|gb|EIC79221.1| ribonuclease R [Streptococcus oralis SK10]
Length = 784
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|150009927|ref|YP_001304670.1| ribonuclease R [Parabacteroides distasonis ATCC 8503]
gi|149938351|gb|ABR45048.1| ribonuclease R [Parabacteroides distasonis ATCC 8503]
Length = 728
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 272 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 331
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 332 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 391
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 392 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 451
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 452 ---VRVYFKVSKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 502
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 503 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 562
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++ H
Sbjct: 563 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVH 593
>gi|404449774|ref|ZP_11014762.1| RNAse R [Indibacter alkaliphilus LW1]
gi|403764621|gb|EJZ25514.1| RNAse R [Indibacter alkaliphilus LW1]
Length = 730
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 44/331 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+D+ + + ID +A + DDA+S RL++G +++ +H+AD T +++P ++ +
Sbjct: 264 EQEISKRRDMRDIPTFTIDPSDAKDFDDAISYRRLENGNLEIGVHIADVTHFVKPKTMLE 323
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A R TSV+L T PM PE+L+ SLR E + +T S V D + + +
Sbjct: 324 KEAYHRATSVYLVDRTIPMLPERLSNGLCSLRPNE--DKLTFSCVFEMDENADVLNHWIG 381
Query: 297 NSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++ YE A E + + +EL +L+ A + R +GA++ T+E + K
Sbjct: 382 RTVTHSDRRFAYEEAQECIDKQEGDFYSELTLLNNLAKKIRKRRFDKGAVNFETVEVKFK 441
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------------------- 395
+ P + L ++++ D +L+ E M+L +A +
Sbjct: 442 LDEKGTP---LGLMIKERKD-IHKLIEEFMLLANRTVAEFIFNKNKGADTFVYRIHDHPD 497
Query: 396 ----GSFNNLALPY----------RGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAID 441
+F+N A + R N + A PE V ++ M A A
Sbjct: 498 SERLETFSNFAKKFGHEIEIGEGVRISKALNKLMDEIAGKPEQNVLEQLAIRSM-AKAKY 556
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P H L Y FTSPIRRY D++ H
Sbjct: 557 TTEPKGHFGLAFKHYTHFTSPIRRYPDMMVH 587
>gi|387128412|ref|YP_006297017.1| 3'-to-5' exoribonuclease RNase R [Methylophaga sp. JAM1]
gi|386275474|gb|AFI85372.1| 3'-to-5' exoribonuclease RNase R [Methylophaga sp. JAM1]
Length = 722
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 45/333 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + +R DL L + ID +A + DDA+ A +L G ++++ +AD + Y++P D
Sbjct: 258 QDAIHDRLDLRELPLVTIDGSDARDFDDAVYAEKLDSGNWRLWVAIADVSYYVKPEDNLD 317
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCN-AVTVSVVLHSDGSIAEYSVDN 297
KDA +RGTSV+ P+ PM PE L+ G+ EV + ++++ DG I Y
Sbjct: 318 KDAQERGTSVYFPSQVIPMLPEALS-NGLCSLNPEVDRLCMACEMIINQDGEIESYKFHQ 376
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
+++ L YE +L N E L+ + E + L+ R ++GAID
Sbjct: 377 AVMNSKARLIYEQVASILQENDSELRNQYAHVLPGLETMYELFHVMLKAREKRGAIDFEM 436
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
ET+ D I+ Q + A RL+ E MI A A Y + L + YR
Sbjct: 437 TETQFMF----DENRKISSIEPRQRNDAHRLIEEFMIAANVAAAKYLLASKLPVLYRVHE 492
Query: 410 QSNID------------------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+++ + + P+G + + +++ M+ A
Sbjct: 493 VPSVEKLSALREFLGELGLFLGGGDEPEPGHYASLLKTVSKRPDGHLLQTVMLRSMKQAV 552
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LGL Y FTSPIRRY DLL H
Sbjct: 553 YS-PDNLGHFGLGLEAYAHFTSPIRRYPDLLVH 584
>gi|338706754|ref|YP_004673522.1| putative exoribonuclease II [Treponema paraluiscuniculi Cuniculi A]
gi|335344815|gb|AEH40731.1| probable exoribonuclease II [Treponema paraluiscuniculi Cuniculi A]
Length = 700
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 273 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 328 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + +KV P
Sbjct: 387 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMKVDFPVQETG 440
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 441 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 500
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 501 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 555
Query: 467 MDLLAHYQV 475
+DLLAH Q+
Sbjct: 556 VDLLAHQQL 564
>gi|291515528|emb|CBK64738.1| RNAse R [Alistipes shahii WAL 8301]
Length = 744
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 149/331 (45%), Gaps = 45/331 (13%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+ R+D + + +D +A + DDALS +++DG +V +H+AD T Y+ P S+ D +A
Sbjct: 257 IAQRRDFRGVTTFTVDPADAKDFDDALSVRKIKDGVWEVGVHIADVTHYVRPHSVIDDEA 316
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
++RGTSV+L T PM PE+L+ E SLR E + L+ + I E ++I
Sbjct: 317 VERGTSVYLVDRTVPMLPERLSNELCSLRPHETSLCFSAVFTLNENLDILEEWFGRTVIH 376
Query: 302 PTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
TY A E++ + AE L + A ALR + R + GAI E + ++
Sbjct: 377 SDRRFTYAEAQEIIETGRGDYAEEVLTLNRLAQALRKE-RFRNGAISFDREEVKFRLDEN 435
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMIL--------CGEAIATYGSFNNLALPYRGQ--- 408
P + +Y ++Q + + +++ E M+L CG+ G + YR
Sbjct: 436 GKP---LGVYFKEQKE-SNQMIEEFMLLANRRVAEFCGKRRTESGRSAERTMVYRVHDTP 491
Query: 409 PQSNID-----VSAFAHL---PEGPVRSSAIVKIMR-------------------AAAID 441
+ +D + F H+ +G + + K+ + A A
Sbjct: 492 SEEKLDRFRQFILRFGHIFKATKGRAVAKELNKLFKQIKGTTEENAVATMAVRSMAKAYY 551
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L P Y FTSPIRRY D++ H
Sbjct: 552 TTDNIGHYGLAFPYYTHFTSPIRRYPDMMVH 582
>gi|293365241|ref|ZP_06611958.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|307703781|ref|ZP_07640722.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|322374464|ref|ZP_08048978.1| ribonuclease R [Streptococcus sp. C300]
gi|291316691|gb|EFE57127.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|307622616|gb|EFO01612.1| ribonuclease R [Streptococcus oralis ATCC 35037]
gi|321279964|gb|EFX57003.1| ribonuclease R [Streptococcus sp. C300]
Length = 784
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|312109557|ref|YP_003987873.1| ribonuclease R [Geobacillus sp. Y4.1MC1]
gi|311214658|gb|ADP73262.1| ribonuclease R [Geobacillus sp. Y4.1MC1]
Length = 761
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 46/335 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L +G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE + S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D +G L Y FTSPIRRY DL+ H
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVH 568
>gi|414082981|ref|YP_006991687.1| ribonuclease R [Carnobacterium maltaromaticum LMA28]
gi|412996563|emb|CCO10372.1| ribonuclease R [Carnobacterium maltaromaticum LMA28]
Length = 776
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 50/331 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DLT+ + ID ++A +LDDA++ +L +G + +H+AD + Y+ S D +A +
Sbjct: 229 NRRDLTNEMIVTIDGEDAKDLDDAVTVRKLDNGNYHLGVHIADVSYYVTEDSALDGEAFE 288
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P +L+ SL E ++ + ++S G + + + S+I +
Sbjct: 289 RATSVYLTDRVIPMLPHRLSNGLCSLNPNEDRLTMSCEMEINSAGEVVNHDIFPSVIHSS 348
Query: 304 YMLTYESATELLHLNLEEEAELK-----------ILSEAAALRLQWRLQQGAIDTATLET 352
+TY + ++L +E++ E++ ++ E L + R +GAID E
Sbjct: 349 KRMTYTAINQIL---MEKDPEVRAEYQEFVPMFELMGELHELLVNKRQARGAIDFEAPEA 405
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
+I V N PE I+ + RL+ M+ E +A + ++ YR Q +
Sbjct: 406 QIIVNNEGHPEEIVMRH----RGIGERLIESFMLSANETVAEHCFKLDVPFIYRVHEQPD 461
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D V+AF L PE V S+ +++ M+ A D
Sbjct: 462 SDRMQRFMEFVTAFGILMKGTSGEVSPKQLQKVLRGVSGEPEEAVISTMLLRSMKQAKYD 521
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H LG Y FTSPIRRY DL+ H
Sbjct: 522 -AEALGHFGLGAEFYTHFTSPIRRYPDLIVH 551
>gi|423333672|ref|ZP_17311453.1| ribonuclease R [Parabacteroides distasonis CL03T12C09]
gi|409226982|gb|EKN19884.1| ribonuclease R [Parabacteroides distasonis CL03T12C09]
Length = 727
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 53/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+D + + ID +A + DDALSA RL +G +V +H+AD T Y++ + DK+A
Sbjct: 271 NREDFRGITTFTIDPKDAKDFDDALSARRLDNGNWEVGVHIADVTHYVKTDGVIDKEAQS 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L T PM PE+L + SLR E + L+SD + + +IIK
Sbjct: 331 RATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAVFELNSDAVVQNSRICRTIIKSD 390
Query: 304 YMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A E++ + + E+ L++ A + R + GAI+ E + ++ P
Sbjct: 391 RRFTYEEAQEVIETGEGDYKEEILALNDLAKKLRERRFKSGAINFDRYEVKFEIDEQGKP 450
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI--------- 413
+ +Y + D A +L+ E M+L +A + + P +G+ +
Sbjct: 451 ---VRVYFKISKD-ANKLIEEFMLLANRTVAEF-----VGRPPKGKTKKTFVYRIHELPD 501
Query: 414 --DVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAI 440
+ FA PE + + ++ M+ A
Sbjct: 502 PDKMENFASFIRRFGYKLKTDGTKTDVSKGINSLLDNVQGKPEENLIETVAIRAMQKARY 561
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++ H
Sbjct: 562 S-TENIGHYGLAFEYYTHFTSPIRRYPDMMVH 592
>gi|423718679|ref|ZP_17692861.1| ribonuclease R [Geobacillus thermoglucosidans TNO-09.020]
gi|383368281|gb|EID45554.1| ribonuclease R [Geobacillus thermoglucosidans TNO-09.020]
Length = 761
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 46/335 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L +G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE + S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D +G L Y FTSPIRRY DL+ H
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVH 568
>gi|385838552|ref|YP_005876182.1| 3'-to-5' exoribonuclease RNase R [Lactococcus lactis subsp.
cremoris A76]
gi|358749780|gb|AEU40759.1| 3'-to-5' exoribonuclease RNase R [Lactococcus lactis subsp.
cremoris A76]
Length = 810
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLPIEI----RKRSRGIAERMIESFMLKANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 572
>gi|336233951|ref|YP_004586567.1| ribonuclease R [Geobacillus thermoglucosidasius C56-YS93]
gi|335360806|gb|AEH46486.1| ribonuclease R [Geobacillus thermoglucosidasius C56-YS93]
Length = 761
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 156/335 (46%), Gaps = 46/335 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R+DL + ID ++A +LDDA++ +L +G K+ +H+AD + Y+E GS
Sbjct: 240 SEKDLQGRRDLRDQMIVTIDGEDAKDLDDAVTVTKLANGHYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTISCEMEINERGEVVSHEIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY ++L ++ +EE K +++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKIL-VDKDEELRKKYAPLVPMFELMAELAEILRNKRMKRGAIDFD 418
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 419 FKEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVH 474
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
+ ++ F ++ PE + S+ +++ M+
Sbjct: 475 EDPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQEILEAVRGEPEEMLISTVMLRSMKQ 534
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D +G L Y FTSPIRRY DL+ H
Sbjct: 535 ARYDAESLGHYG-LSTDFYTHFTSPIRRYPDLIVH 568
>gi|414074159|ref|YP_006999376.1| Exoribonuclease R, VacB family [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974079|gb|AFW91543.1| Exoribonuclease R, VacB family [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 810
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLPIEI----RKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 572
>gi|168185501|ref|ZP_02620136.1| ribonuclease R [Clostridium botulinum C str. Eklund]
gi|169296470|gb|EDS78603.1| ribonuclease R [Clostridium botulinum C str. Eklund]
Length = 745
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 43/332 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL + + ID ++A +LDDA+S +L +G + +H+AD + Y++ S D
Sbjct: 238 EEEAKGREDLREVVMVTIDGEDAKDLDDAVSIEKLDNGNYLLGVHIADVSHYVKEKSPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KR TSV+L PM P++L+ SL A+T + +++ G + Y + S
Sbjct: 298 KEALKRATSVYLINKVIPMLPKELSNGICSLNPKVDRLAMTCFMEINNKGKVENYRITKS 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK +TY T++L E E K++ E + + R+ +GAID
Sbjct: 358 VIKTNERMTYTDVTKMLRDKDEATIEKYKDLYKYFKLMEELCEILYKKRISRGAIDFEFE 417
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---- 406
E++I + + P I++ ++A A R++ E M++C E +A + + + YR
Sbjct: 418 ESKIILDDNGKP---IDIKPYERA-IANRIIEEFMLVCNETVAEHMYWTKIPFVYRIHED 473
Query: 407 -------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+P ++ A + EG R ++ + K R
Sbjct: 474 PDEERLQKFREFAYNLGYFIKPTKDVHPKALQEIIEG-ARGKKEETVVNTLLLRSLKQAR 532
Query: 448 H-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
+ G GL Y FTSPIRRY DL+ H
Sbjct: 533 YAPQCVGHFGLAAKYYCHFTSPIRRYPDLIIH 564
>gi|116511759|ref|YP_808975.1| exoribonuclease R [Lactococcus lactis subsp. cremoris SK11]
gi|116107413|gb|ABJ72553.1| RNAse R [Lactococcus lactis subsp. cremoris SK11]
Length = 810
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R D + + ID +A +LDDA+ A RL +G ++ +H+AD + Y+ S D
Sbjct: 246 ESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTENSPLD 305
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 306 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RLNRLTQSCVMEISPEGRVVNYQIS 363
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE+ A++ KI+ E + R Q+GAID T
Sbjct: 364 QSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAIDFDT 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 424 VEAKIIVNEKGLPIEI----RKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 479
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 480 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKNKGQPGEMVLSTMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 540 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 572
>gi|306825393|ref|ZP_07458733.1| ribonuclease R [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304432331|gb|EFM35307.1| ribonuclease R [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 784
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNMELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|388578941|gb|EIM19272.1| RNB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 931
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 143/338 (42%), Gaps = 46/338 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRL-QDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+R+D + L VY ID A+ELDD +S +DG V++H+ADPT I A
Sbjct: 453 HRRDFSKLPVYVIDDAGANELDDGMSVEPTDKDGNTWVHVHIADPTSVIPFNHPLSILAK 512
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+R TSV+LP T PM P++ M SL A+T S L G I Y V S I
Sbjct: 513 ERHTSVYLPHRTIPMLPKEFCMSNFSLGSRSPQQALTFSAQLDDKGRIRNYDVSPSFINN 572
Query: 303 TYMLTYESATELL----------------------HLNLEEEAELKILSEAAALRLQWRL 340
++ Y + E+L ++ E+ L +S+ A L R+
Sbjct: 573 IKIMQYNAVDEVLGADALQNDNRLLDKSPNKASNTSISTEDIDTLGRVSQLAVLHSTRRV 632
Query: 341 QQGAIDTATLETRIKVANPE-----------DPEPIINLYV--EDQADPAMRLVSEMMIL 387
+ G + T +V D P + L Q PA VS+ M +
Sbjct: 633 ENGMLFWHTFTPEAQVTPLPLPTPPSELALWDGRPSVKLLAVPNVQQSPARFAVSQFMSI 692
Query: 388 CGEAIATY-------GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMR--AA 438
E A + G F LP P S D+ + G V S+ + K M +
Sbjct: 693 ACEVTALWCRDHDVPGIFRGAGLPEVNDPSSLEDLMGKRDIVTGVVSSADVGKSMASFSG 752
Query: 439 AIDFRKPVRHGVLGLP-GYVQFTSPIRRYMDLLAHYQV 475
+ KP+ H + G P GY + TSP+RRY D+++HYQ+
Sbjct: 753 STLSTKPIPHLLNGCPDGYARVTSPLRRYNDMVSHYQI 790
>gi|193216324|ref|YP_001997523.1| ribonuclease R [Chloroherpeton thalassium ATCC 35110]
gi|193089801|gb|ACF15076.1| ribonuclease R [Chloroherpeton thalassium ATCC 35110]
Length = 758
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 147/332 (44%), Gaps = 48/332 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL V+ ID +A + DDALS L G+ +V IH+AD + ++ GSL D +A +
Sbjct: 286 NRLDLRAKSVFTIDPFDAKDFDDALSIEDLGSGKYEVGIHIADVSHFVTEGSLLDIEAQR 345
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+L PM P L+ SLR E A + V L+ +G++ +Y + ++I
Sbjct: 346 RSTSVYLVDRVIPMLPSMLSENVCSLRPKEDRLAYSALVQLNDEGNVLDYRFEKTLINSK 405
Query: 304 YMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYE A +++ E EL++L+ L R + G ID T E + ++ +P
Sbjct: 406 RRFTYEEAQKIISSGKGEFCYELQLLNSLGKLLSAKRFENGGIDFDTEEIKFRLDEKGEP 465
Query: 363 -EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS--FNNLALPYRG--------QPQS 411
E I + +E + RL+ E M+L +A + S + + Y +P+
Sbjct: 466 IELIKKIRLE-----SHRLIEEFMLLANRLVAMHISSKYQDKKHEYPSIFRVHDSPRPER 520
Query: 412 NIDVSAFAH------------LPEGPVRSSAIVKIMR-------------------AAAI 440
+ +S F L V S + ++ A AI
Sbjct: 521 IVQLSEFVTKLGFKLELKKNALNNPTVSSKGLRSLLEQVKGSNVEILVNEIALRSMAKAI 580
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K + H LG Y FTSPIRRY DL+ H
Sbjct: 581 YHEKNIGHFGLGFDYYTHFTSPIRRYPDLIVH 612
>gi|422823160|ref|ZP_16871348.1| ribonuclease R [Streptococcus sanguinis SK405]
gi|324993810|gb|EGC25729.1| ribonuclease R [Streptococcus sanguinis SK405]
Length = 782
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLEGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVIKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|449131121|ref|ZP_21767338.1| hypothetical protein HMPREF9724_02003 [Treponema denticola SP37]
gi|448940467|gb|EMB21373.1| hypothetical protein HMPREF9724_02003 [Treponema denticola SP37]
Length = 623
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 140/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E LN A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-KLN----ANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FIGPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|284040706|ref|YP_003390636.1| ribonuclease R [Spirosoma linguale DSM 74]
gi|283819999|gb|ADB41837.1| ribonuclease R [Spirosoma linguale DSM 74]
Length = 825
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 150/333 (45%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R+D+ + + ID +A + DDALS L +G ++ IH+AD T Y+ PGS +++
Sbjct: 309 DLAKRRDMRDVTTFTIDPIDAKDFDDALSVQILDNGNFEIGIHIADVTHYVLPGSKLEEE 368
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVDNS 298
A KR TSV+L PM PEKL+ SLR E + +T S V SD I +
Sbjct: 369 AFKRATSVYLVDRVVPMLPEKLSNGLCSLRPNE--DKLTFSAVFEMTSDAKIVNEWFGRT 426
Query: 299 IIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
I YE A ++L+ N + EL++L+E A R + GAI+ T+E R ++
Sbjct: 427 AIHSNRRFAYEEAQDILNSNSGDYIEELRLLNELAYKLRDERFKNGAINFETVEVRFRL- 485
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY----------GSFNNLALPYRG 407
E+ P+ +Y + + D +L+ E M+L + +A + G N +
Sbjct: 486 -DENGVPLA-VYPKIRQD-TNKLIEEFMLLANKRVAEFVHSLSKRNKGGEENTMVYRVHE 542
Query: 408 QPQS-----------------NID-----------VSAFAHLPEGPVRSSAIVKIMRAAA 439
P N+D +++ PE + V+ M A
Sbjct: 543 SPAEDKLRSFSDFARKLGYKLNVDDEHLSNSMNRFMASIEGKPEANMLQQLAVRTMSKAR 602
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++AH
Sbjct: 603 YS-TEDLGHFGLAFKRYSHFTSPIRRYPDMMAH 634
>gi|423226569|ref|ZP_17213034.1| ribonuclease R [Bacteroides cellulosilyticus CL02T12C19]
gi|392629048|gb|EIY23064.1| ribonuclease R [Bacteroides cellulosilyticus CL02T12C19]
Length = 714
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 101/335 (30%), Positives = 157/335 (46%), Gaps = 47/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D ++ + ID +A + DDALS +L+DG +V +H+AD T Y+ GS
Sbjct: 252 SDEEIAKREDFRNVTTFTIDPKDAKDFDDALSIRKLKDGLWEVGVHIADVTHYVTEGSTI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + V +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNINEKGDVKDSRVVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++IK TYE A +++ + +EE L + + A ALR Q R GAI+ E +
Sbjct: 372 TVIKSDRRFTYEEAQQIIETKEGDFKEEI-LMLDTIAKALR-QKRFVAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR--- 406
++ P I++Y + D A +LV E M+L +A G N A PYR
Sbjct: 430 EIDEKGKP---ISVYFKVSKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKAKVFPYRIHD 485
Query: 407 -GQPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRA 437
P+ + DVS + HL E + + ++ M+
Sbjct: 486 LPDPEKLDNLAQFIARFGYKIRTGGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L Y FTSPIRR+ D++ H
Sbjct: 546 ARYSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 579
>gi|301301279|ref|ZP_07207434.1| ribonuclease R [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851155|gb|EFK78884.1| ribonuclease R [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 799
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 159/336 (47%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R DLT + ID E+ +LDDA++ +L +G + +H+ D + Y++P +
Sbjct: 255 TEEEKVGRVDLTDQDLVTIDSIESKDLDDAVNVWKLPNGNYHLGVHIVDVSHYVKPKTPL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A +RGTSV+L PM P KL+ SL A+T + +++DG + + +
Sbjct: 315 DKEAFERGTSVYLTDRVIPMLPPKLSNGICSLNPHVERLAMTCEMEINADGEVVNHKIFP 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY++ ++L + E+ E K ++E + ++ R ++GAID
Sbjct: 375 SVIKSTERMTYKAINKILESDDEKTKERYADLVPMFKDMAELHKILVKMRKRRGAIDFDA 434
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I++ + ++ + R+V M+ E +A + +N L +P+
Sbjct: 435 PEAKIIVDELGHP---IDIELRERG-TSERMVESFMLAANETVAAH--YNKLHVPFVYRI 488
Query: 406 --RGQPQS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMR 436
P+ I+V+ A PE + S+ +++ M+
Sbjct: 489 HETPTPEKITTFFEALNSLGIEVTGRSNDVKPKMLQNILKKVAGKPEEAMVSTMLLRSMQ 548
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A P+ H L Y FTSPIRRY DL+ H
Sbjct: 549 QAKYS-PDPLGHFGLAAKDYTHFTSPIRRYPDLMVH 583
>gi|449109546|ref|ZP_21746180.1| hypothetical protein HMPREF9722_01876 [Treponema denticola ATCC
33520]
gi|448958789|gb|EMB39517.1| hypothetical protein HMPREF9722_01876 [Treponema denticola ATCC
33520]
Length = 623
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDSQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|406586436|ref|ZP_11061367.1| exoribonuclease R [Streptococcus sp. GMD1S]
gi|419813657|ref|ZP_14338470.1| exoribonuclease R [Streptococcus sp. GMD2S]
gi|419817020|ref|ZP_14341191.1| exoribonuclease R [Streptococcus sp. GMD4S]
gi|404466561|gb|EKA11893.1| exoribonuclease R [Streptococcus sp. GMD4S]
gi|404472768|gb|EKA17183.1| exoribonuclease R [Streptococcus sp. GMD2S]
gi|404474116|gb|EKA18436.1| exoribonuclease R [Streptococcus sp. GMD1S]
Length = 784
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMGGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRREFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGIAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVH 570
>gi|51245758|ref|YP_065642.1| ribonuclease R [Desulfotalea psychrophila LSv54]
gi|50876795|emb|CAG36635.1| related to ribonuclease R [Desulfotalea psychrophila LSv54]
Length = 721
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/399 (26%), Positives = 185/399 (46%), Gaps = 51/399 (12%)
Query: 120 KDSDRVLLAVAQR--PDGKKNWMVYDQNGASCSIKPQQVTFVVPGV---EKFDHKDISNF 174
+ D V++ + Q PD + M+ + G+ S+K Q+ FVV +KF + +
Sbjct: 198 RHGDGVIVTLKQTATPDKVRQGMLLESFGSPDSVK-SQIRFVVEKSVLPDKFSGETYAEL 256
Query: 175 LQ-KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
Q ED+ R DL +K ID D A + DDA+ + + ++Y+ +AD + +++
Sbjct: 257 EQMGGEDHDPKRVDLRDIKFVTIDGDTAKDFDDAVCVEK-RGVNFRLYVAIADVSHFVKV 315
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIA 291
GS D+DA +RGTSV+ P PM PEKL+ SL E + +T++ +L D G +
Sbjct: 316 GSALDRDAYERGTSVYFPGTVIPMLPEKLSNNLCSLVPDE--DRLTLTAILDIDRAGKLQ 373
Query: 292 EYSVDNSIIKPTYMLTYESATELL----HLNLEEEAELKILSEA---AALRLQWRLQQGA 344
+ S S+I+ + TY E+L ++ +E+A L +L EA A + + R +GA
Sbjct: 374 KKSFCRSLIRSQHRFTYTRVQEILDTPGSVSADEKAFLSMLQEAEKLARILKEKRAIRGA 433
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+ E+ I + D E + +A + +++ E M+ EA+A + + +
Sbjct: 434 LGFTMPESIILL----DSEGEVENVARSEAHFSQKIIEEFMLSANEAVAEFFTEQGCSAL 489
Query: 405 YRGQPQSNID----VSAFAH-----LP---EGPVRSSAIVKIMRAAAIDF---------- 442
YR + ++D + +AH LP P +++ + + +F
Sbjct: 490 YRIHEKPDVDRVKEFATYAHNLGMQLPPPDNSPAWFGRVIEESKGSEKEFVVNNLLLRSM 549
Query: 443 ------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
V H L Y FTSPIRRY DL+ H ++
Sbjct: 550 KQAKYSADNVGHFGLAATDYTHFTSPIRRYPDLMVHREL 588
>gi|307708609|ref|ZP_07645073.1| ribonuclease R [Streptococcus mitis NCTC 12261]
gi|307615358|gb|EFN94567.1| ribonuclease R [Streptococcus mitis NCTC 12261]
Length = 784
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 160/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L ++E+ E ++++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYNDVNDILAGDVEKRQEYQKIVPSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|319900672|ref|YP_004160400.1| RNAse R [Bacteroides helcogenes P 36-108]
gi|319415703|gb|ADV42814.1| RNAse R [Bacteroides helcogenes P 36-108]
Length = 717
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 113/420 (26%), Positives = 180/420 (42%), Gaps = 60/420 (14%)
Query: 106 ENQVLQKGLL-----LEFKKDSDRVLLAVAQRPDGKKN--WMVYDQNGASCSIKPQQ--- 155
EN+ L + L+ K D+ ++ V + PD KN V D G + +
Sbjct: 170 ENRTLANDIFIPKEKLKGGKTGDKAIVKVVEWPDKAKNPIGQVIDILGRTGDNTTEMHAI 229
Query: 156 -----VTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSA 210
+ +V P + IS+ + E + R+D + + ID +A + DDALS
Sbjct: 230 LAEFGLPYVYPSAVENAADKISDEIPAEE--IAKREDFRSVTTFTIDPKDAKDFDDALSI 287
Query: 211 MRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR 270
+L++G +V +H+AD T Y++ G + DK+A KR TSV+L T PM PE+L SLR
Sbjct: 288 RKLKEGLWEVGVHIADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLR 347
Query: 271 QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILS 329
E A +V + G + V +++IK TYE A ++ + + E+ L
Sbjct: 348 PDEEKLAYSVIFEMTEKGEVNNSRVVHTVIKSNRRFTYEEAQNIIETRKGDFKEEVLQLD 407
Query: 330 EAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG 389
A L + R + GAI+ E + ++ P +++Y ++ D A +LV E M+L
Sbjct: 408 RLAKLLRESRFKAGAINFDRYEVKFEIDEKGKP---VSVYFKESKD-ANKLVEEFMLLAN 463
Query: 390 EAIATY-----GSFNNLALPYR----GQPQ--------------------SNIDVS-AFA 419
+A LPYR P+ + DVS +
Sbjct: 464 RTVAEKIGRVPKGKKAKVLPYRIHDLPDPEKLDNLAQFIARFGYKLRTGGTKTDVSKSIN 523
Query: 420 HL-------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
HL E + + ++ M+ A V H L Y FTSPIRRY D++ H
Sbjct: 524 HLLDDIQGKKEENLIETVSIRAMQKARYSVHN-VGHYGLAFDYYTHFTSPIRRYPDMMVH 582
>gi|417934996|ref|ZP_12578316.1| ribonuclease R [Streptococcus mitis bv. 2 str. F0392]
gi|340771566|gb|EGR94081.1| ribonuclease R [Streptococcus mitis bv. 2 str. F0392]
Length = 784
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNMELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPGIELMAKLHERLENMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDI----VLRQRGIAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|371775901|ref|ZP_09482223.1| ribonuclease R [Anaerophaga sp. HS1]
Length = 720
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 158/353 (44%), Gaps = 49/353 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L +G +V +H+AD T Y+ P S+ +K+A KR
Sbjct: 259 RRDFRGVTTFTIDPVDAKDFDDALSVRKLDNGLWEVGVHIADVTYYVNPNSIIEKEAAKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM PE+L+ E SLR E +V + + I + V +II+
Sbjct: 319 ATSVYLVDRVVPMLPERLSNELCSLRPDEDKLCFSVVFQIDDNAKIIDSWVGRTIIRSIR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ L + + EL++L++ A R +G++D +E + ++ +D +
Sbjct: 379 RFTYEEAQQVIETGLGDCKMELEVLNDLAKKLRAERFSKGSVDFERVEVKFEL--DDDGK 436
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL------------ALPYR----G 407
P+ + E + A +L+ E M+L + +A N L YR
Sbjct: 437 PLSVTFKEPK--DANKLIEEFMLLANKRVAEIIGKNELDKAPSHHNKTAKTFVYRIHDEP 494
Query: 408 QPQSNIDVSAFAH------LPEGP---------------------VRSSAIVKIMRAAAI 440
P+ S F P+G + + ++ M + A+
Sbjct: 495 DPEKFETFSRFVRKFGLEAKPKGQETISHSLNRLLDKVQGQKHQNIVETLAIRTM-SKAV 553
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEV 493
+ H LG Y FTSPIRRY D++ H + SV AQ +E+
Sbjct: 554 YSTHNIGHYGLGFKYYTHFTSPIRRYPDMMVHRLLQRYLEGGRSVSAQKYEEL 606
>gi|357236183|ref|ZP_09123526.1| ribonuclease R 1 family protein [Streptococcus criceti HS-6]
gi|356884165|gb|EHI74365.1| ribonuclease R 1 family protein [Streptococcus criceti HS-6]
Length = 801
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 154/340 (45%), Gaps = 51/340 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL + ID EA +LDDA+ +L +G ++ +H+AD + Y+ GS
Sbjct: 246 SESDFEGRLDLRDEITFTIDGKEAKDLDDAVHIKKLPNGNFELGVHIADVSYYVTEGSAL 305
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
DK+A+ RGTSV++ PM PE+L+ SL N +T S ++ + G + ++++
Sbjct: 306 DKEAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VNRLTQSAIMEINPQGKVVKHTI 363
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAA-------LRLQWRLQQGAIDTA 348
++IK T+ +TY+ ++L N + K + E+ + + + R+++GA+D
Sbjct: 364 TQTVIKTTFRMTYDDVNQMLAGNPAVIDQFKPIMESVSHMAELHKILVAMRIKRGALDFD 423
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
E +I V N P ++ V D+ A R++ M+ E +A + + L YR
Sbjct: 424 RPEAKILVDNKGLPTDVV---VRDRG-TAERMIESFMLAANECVAEHFAKRKLPFIYRIH 479
Query: 407 -----------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRA 437
GQ ++ A P V S +++ M+
Sbjct: 480 ETPKAEKLQKFMDYASLFGVPIYGTANSLGQKALQEFMNRIAGQPGHEVMSMMLLRSMQQ 539
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
A HG GL Y FTSPIRRY DLL H V
Sbjct: 540 ARYSENN---HGHYGLAADYYTHFTSPIRRYPDLLVHRMV 576
>gi|407451488|ref|YP_006723212.1| hypothetical protein B739_0712 [Riemerella anatipestifer RA-CH-1]
gi|403312473|gb|AFR35314.1| hypothetical protein B739_0712 [Riemerella anatipestifer RA-CH-1]
Length = 721
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 41/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ P +L D
Sbjct: 256 DDEVKKRWDMRGICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVPNTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TSV+L PM PE L+ E SLR E + L+ I + +
Sbjct: 316 QEAYQRATSVYLVDRVVPMLPEVLSNEVCSLRPNEDKYTFSAVFELNDKAEIKKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ L + A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLADEILTLDKLAKILREERIRKGAITFDRSEVRFNL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP------YRGQPQS 411
E+ EP I +Y + D + L+ E M+L ++ + S N P YR
Sbjct: 435 -DENNEP-IGVYFKVSKD-SNHLIEEFMLLANRKVSEFISLNKKGSPTGKTFIYRVHDDP 491
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA-------------------AID 441
+ V+ F + L + ++ +++++ AI
Sbjct: 492 DPTKLEALRDFVATFGYKMNLANSQKVAESMNELLKSVKGKGEENMIETLAMRSMSKAIY 551
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H LG Y FTSPIRRY DL+AH
Sbjct: 552 STEPIGHYGLGFEYYTHFTSPIRRYPDLIAH 582
>gi|422341861|ref|ZP_16422801.1| RNB-like family protein [Treponema denticola F0402]
gi|325473929|gb|EGC77117.1| RNB-like family protein [Treponema denticola F0402]
Length = 623
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 140/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|327403544|ref|YP_004344382.1| ribonuclease R [Fluviicola taffensis DSM 16823]
gi|327319052|gb|AEA43544.1| ribonuclease R [Fluviicola taffensis DSM 16823]
Length = 718
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 42/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L++G +++ +H+AD ++Y++P S DK+A++R
Sbjct: 261 RRDFREILTFTIDPADAKDFDDALSIRKLENGHLEIGVHIADVSQYVKPDSAMDKEALRR 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G SV+L PM PE+L+ SLR E + L +G + ++I +
Sbjct: 321 GNSVYLVDRVIPMLPEQLSNMVCSLRPKEDKFTFSAVFELDENGKMYNEWFGKTVIHSDH 380
Query: 305 MLTYESATELLH-LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
YE A E+L + EL IL + A + + R +QGA+ + E R K+ ++P
Sbjct: 381 RFAYEDAQEILEGAEGPYKEELHILDKIAKIYRKERFKQGALMINSEEIRFKLDENKEP- 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCG-----------------------------EAIAT 394
I++ V+ D A +L+ E M+L E IA
Sbjct: 440 --IDVVVKVSKD-AHQLIEEFMLLANKRVAMFVGAPQKGKDPVPFVYRIHDKPDPEKIAL 496
Query: 395 YGSFNN-------LALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR 447
+G F + P + N ++ E + ++ M A D +
Sbjct: 497 FGLFLDKFGYSLEFTSPEKAAQSINKLLNDIRLKNEYSIIQQMAIRSMAKATYD-TDNIG 555
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 556 HYGLAFQYYGHFTSPIRRYADLMVH 580
>gi|315283561|ref|ZP_07871719.1| ribonuclease R [Listeria marthii FSL S4-120]
gi|313612791|gb|EFR86775.1| ribonuclease R [Listeria marthii FSL S4-120]
Length = 793
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 148/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ M+L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVMQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPKVDRFTMSCEMEIDEDGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N E E L+ + + A + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVENDEALREKYAPIVPMLEAMQKLAETLRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|418975353|ref|ZP_13523262.1| ribonuclease R [Streptococcus oralis SK1074]
gi|383348724|gb|EID26683.1| ribonuclease R [Streptococcus oralis SK1074]
Length = 784
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|254480922|ref|ZP_05094168.1| ribonuclease R [marine gamma proteobacterium HTCC2148]
gi|214038717|gb|EEB79378.1| ribonuclease R [marine gamma proteobacterium HTCC2148]
Length = 819
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 147/332 (44%), Gaps = 39/332 (11%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
+ AE + LNR DL HL ID ++A + DDA+ G ++++ +AD Y+ PGS
Sbjct: 283 EPAEQDKLNRMDLRHLAFVTIDGEDARDFDDAVYCETASGGGWRLWVAIADVCHYVRPGS 342
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A KR TSV+ P PM PE L+ SL+ A+ + + G++ +Y
Sbjct: 343 ALDEEASKRATSVYFPERVVPMLPEALSNGLCSLKPAVDRLAMVCEMEISKAGALGKYQF 402
Query: 296 DNSIIKPTYMLTYESATELLH------LNLEEEAELKILSEAAALRLQWRLQQGAIDTAT 349
S+I LTY +L ++ E++L+ L + R +GAID T
Sbjct: 403 YESVIHSHARLTYTQVGAVLENGNHPDVDAGRESDLRRLHDLYKALRGARDVRGAIDFET 462
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
+ETRI + + + I+ + D A +L+ E M+ A A + N + + YR
Sbjct: 463 VETRIIFDDQKKIDAIVPVVRND----AHKLIEECMLCANVAAAGFFEANEVPMLYRVHE 518
Query: 410 QSN-------------IDVSAFAHLPEGPVRSSAIVK--------------IMRAAAIDF 442
N + +S + PV ++ ++R+ +
Sbjct: 519 GPNEEKLENLRKFLGELGLSLAGGVKPTPVHYQELLAEVKDRDDAHVIQTMLLRSLSQAV 578
Query: 443 RKPVRHGVLGL--PGYVQFTSPIRRYMDLLAH 472
+P +G GL Y FTSPIRRY DLL H
Sbjct: 579 YQPENNGHFGLHYDAYAHFTSPIRRYPDLLVH 610
>gi|401683405|ref|ZP_10815291.1| ribonuclease R [Streptococcus sp. BS35b]
gi|400187483|gb|EJO21677.1| ribonuclease R [Streptococcus sp. BS35b]
Length = 784
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|89255575|ref|YP_512936.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115314081|ref|YP_762804.1| ribonuclease II [Francisella tularensis subsp. holarctica OSU18]
gi|156501518|ref|YP_001427583.1| ribonuclease II (RNB-like) family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|254366977|ref|ZP_04983013.1| ribonuclease II [Francisella tularensis subsp. holarctica 257]
gi|290954408|ref|ZP_06559029.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica URFT1]
gi|422938083|ref|YP_007011230.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica FSC200]
gi|423049879|ref|YP_007008313.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica F92]
gi|89143406|emb|CAJ78579.1| Ribonuclease II family protein [Francisella tularensis subsp.
holarctica LVS]
gi|115128980|gb|ABI82167.1| ribonuclease II [Francisella tularensis subsp. holarctica OSU18]
gi|134252803|gb|EBA51897.1| ribonuclease II [Francisella tularensis subsp. holarctica 257]
gi|156252121|gb|ABU60627.1| ribonuclease II (RNB-like) family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407293234|gb|AFT92140.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica FSC200]
gi|421950601|gb|AFX69850.1| ribonuclease II family protein [Francisella tularensis subsp.
holarctica F92]
Length = 616
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H++DP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHISDPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFATRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|251771616|gb|EES52192.1| ribonuclease R [Leptospirillum ferrodiazotrophum]
Length = 759
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/364 (28%), Positives = 160/364 (43%), Gaps = 56/364 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D L++ ID D A + DDA+S DG + + IH+AD + Y+ PGS D++
Sbjct: 283 ERRDFRSLEIVTIDGDTAKDFDDAISIEEEDDGTVTLGIHIADVSAYVLPGSALDREGFA 342
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PMFPE L+ +SL A +V+ + +G + +++D S+I+
Sbjct: 343 RATSVYFPDRVLPMFPEVLSNGVLSLNPETDRLARSVTARIDREGQVLSWTLDRSVIRSR 402
Query: 304 YMLTYESATELLHLN-----LEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
+TY L L E L + A+L + R+ +G++D E I +
Sbjct: 403 MRMTYSEVHRALTGEPSPDYLPYENRLHTMWRVASLLRKRRMGKGSLDFDLPEPEIVLDL 462
Query: 359 PEDPEPIIN--LYVEDQADPAMRLVSEMMILCGEAIAT---------------------- 394
+P I+ Y+ Q L+ E M+L +AT
Sbjct: 463 RGEPVDILRSPRYLSHQ------LIEEFMLLANTLVATRLRERLGTALFRAHETPTPEKI 516
Query: 395 ---YGSFNNLALPYRGQPQ--SNIDVSAFAHLPEG-----PVRSSAIVKIMRAAAIDFRK 444
Y +L LP+ +P+ + D+S +G PV S +++ ++ A D
Sbjct: 517 ENLYSFLASLGLPF-TKPEVVTPRDLSRILEETKGSPLEHPVHYS-VLRSLKQARYD-PS 573
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAW--------VSVGAQIGDEVEVK 496
P+ H L P Y FTSPIRRY DL+ H + L ++ +S AQ E E K
Sbjct: 574 PLGHFGLAFPDYTHFTSPIRRYPDLIVHRLLDLATSSGMESLLPGSLSAVAQHCSERERK 633
Query: 497 VEEA 500
EA
Sbjct: 634 ATEA 637
>gi|145219389|ref|YP_001130098.1| RNAse R [Chlorobium phaeovibrioides DSM 265]
gi|145205553|gb|ABP36596.1| RNAse R [Chlorobium phaeovibrioides DSM 265]
Length = 794
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 48/338 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ +L R D+ ++ ID +A + DDALS L DG ++ +H+AD + Y+ S
Sbjct: 318 TDKDLKERLDIRDKVLFTIDPVDAKDFDDALSVESLGDGNWRIGVHIADVSHYVPEDSAL 377
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KR TSV+L PM P +L+ + SL G A +V ++ G +++
Sbjct: 378 DKEALKRSTSVYLVDRVIPMLPSRLSEDICSLNPGVDRMAFSVFFTMNEKGKVSKQEFHK 437
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE ++L+ + EL++L + + L + R + G +D T E R ++
Sbjct: 438 TVIHSKRRFTYEDVQDILNNGKGDYLMELQLLEKISVLLREERFRHGGLDFETEEVRFRL 497
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------GSFNNLALPYR--G 407
+ +P ++ + + + RL+ E M+L +A + G + YR G
Sbjct: 498 GSKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAEHLTKTFKDGKKEPQPVIYRVHG 553
Query: 408 QPQSNIDVSAFAHL-------------PEGPVRSSA----IVKIMRAAAIDF-------- 442
PQ V+ A+ +GP+ S+ +++ +R + ++F
Sbjct: 554 SPQQE-RVTILANFVKKMGYELKLNKGKDGPIVSAKALRELLQKVRGSNVEFLVNELVLR 612
Query: 443 --RKPVR------HGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY DL+ H
Sbjct: 613 CMSKAVYTGENDGHYGLGFDHYTHFTSPIRRYPDLIVH 650
>gi|153807031|ref|ZP_01959699.1| hypothetical protein BACCAC_01308 [Bacteroides caccae ATCC 43185]
gi|423219986|ref|ZP_17206482.1| ribonuclease R [Bacteroides caccae CL03T12C61]
gi|149130151|gb|EDM21361.1| ribonuclease R [Bacteroides caccae ATCC 43185]
gi|392624249|gb|EIY18342.1| ribonuclease R [Bacteroides caccae CL03T12C61]
Length = 718
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L++G +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKEGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFNITEKGEVKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDFKEEV-LTLDTIAKALR-EKRFSAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFEYYTHFTSPIRRFPDMMVH 582
>gi|261250798|ref|ZP_05943372.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417953998|ref|ZP_12597039.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260937671|gb|EEX93659.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342816266|gb|EGU51168.1| exoribonuclease II [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 667
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 182/408 (44%), Gaps = 55/408 (13%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQNGASCS---IKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + Q P G + V + + I P VT +
Sbjct: 116 RKGIKSDDLKEGDWVVAHLTQHPLKGDNGFFVEISEKITDTDDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ K +D L R D+TH+ ID ++DDAL A + + G ++ I +AD
Sbjct: 176 EPAGIDNWEIK-DDADLERVDMTHVPFVTIDGASTKDMDDALYAKKTESGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL Q EV A+ +V +
Sbjct: 235 PTAYITPDSEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMQDEVRPALCCTVTVAK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQ 337
DG I + + IK L Y+ ++ L E + ++ L + + R +
Sbjct: 295 DGVIGDDIKFFAANIKSHARLVYDHVSDWLENGESTEWQPNEEIAQIVRDLYDFSLARAE 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR Q + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 355 WREQNAVVFPDRPDYRFELSEDND---VVAIH-SDMRRSANRLVEEAMITANICAGRTLQ 410
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKI------------MR 436
+ G FN L ++ P+ DV F + PEG P + ++V +
Sbjct: 411 STFNSGVFNT-HLGFK--PEKIADVLGFVN-PEGELPFTAESVVTLEGFAELRRWLGKQE 466
Query: 437 AAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ +D R +P+ H +GL Y +TSPIR+Y D++ H
Sbjct: 467 SSYLDNRIRKFQAYSEIGNQPLPHYAMGLDIYATWTSPIRKYGDMINH 514
>gi|408502659|ref|YP_006870103.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|408476022|gb|AFU66787.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 701
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 274 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 328
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 329 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 388 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 441
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 442 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 501
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 502 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 556
Query: 467 MDLLAHYQV 475
+DLLAH Q+
Sbjct: 557 VDLLAHQQL 565
>gi|255021111|ref|ZP_05293164.1| Ribonuclease R [Acidithiobacillus caldus ATCC 51756]
gi|340781742|ref|YP_004748349.1| ribonuclease R [Acidithiobacillus caldus SM-1]
gi|254969525|gb|EET27034.1| Ribonuclease R [Acidithiobacillus caldus ATCC 51756]
gi|340555895|gb|AEK57649.1| Ribonuclease R [Acidithiobacillus caldus SM-1]
Length = 742
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 157/350 (44%), Gaps = 56/350 (16%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL HL + ID +A + DDA+ A ++G ++++ +AD Y+ PGS D++A K
Sbjct: 268 GRRDLRHLPLVTIDGADAKDFDDAVYAETREEGGFRLFVAIADVATYVRPGSALDEEARK 327
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG SV+ P PM PE L+ SL + + L + G++ ++ ++++
Sbjct: 328 RGNSVYFPRRVIPMLPEVLSNGLCSLNPQVDRLCMVCEMELDAQGNLEQFRFARAVMRSQ 387
Query: 304 YMLTYESATELLHLN---LEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETR 353
TY+ +L + E EAE L+ L EA A + R +G I+ T ETR
Sbjct: 388 RRFTYDEVAAILGGDSDLREREAELVPHLETLQRLYEALA---RAREARGTIEFDTQETR 444
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I E I+ L Q + A R++ E M+ A + + L + YR P+ N+
Sbjct: 445 IVYNEQGRIENIVPL----QRNVAHRMIEECMLAANVCAAQFFRIHELPMLYRVHPEPNV 500
Query: 414 D-----------VSAFAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV----------- 446
D + +P P RS+ + +++ RA A + +
Sbjct: 501 DKIEDLRRFLGELGVPVRIPARP-RSADLARVIEETRDRADASLIQTVILRSLSQAFYTV 559
Query: 447 ---RHGVLGLPGYVQFTSPIRRYMDLLAHYQVG--LQAAA------WVSV 485
H L P Y FTSPIRRY DL+ H + L +AA W+SV
Sbjct: 560 DTSMHFGLAFPAYTHFTSPIRRYPDLIVHRGIQELLDSAAEGREPRWLSV 609
>gi|126654057|ref|ZP_01725884.1| ribonuclease R [Bacillus sp. B14905]
gi|126589462|gb|EAZ83608.1| ribonuclease R [Bacillus sp. B14905]
Length = 731
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 160/338 (47%), Gaps = 52/338 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ ++ DG K+ +H+AD + Y+ GS+
Sbjct: 152 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVIKNVDGTYKLGVHIADVSYYVTQGSVI 211
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ + G++ + +
Sbjct: 212 DLEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDASGNVISHEIFQ 271
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE------------LKILSEAAALRLQWRLQQGAI 345
S+IK T +TY+ ++ LEE+ E K ++E + + + R +GAI
Sbjct: 272 SVIKTTERMTYKDVYKI----LEEQDEALIKRYEPLVPMFKNMAELSGILRRKRESRGAI 327
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E+++ V P +++ + ++ A +L+ + M+ E +A + + N+ Y
Sbjct: 328 DFDFKESKVIVNEEGWP---VDIEIRERT-VAEKLIEDFMLAANETVAEHFHWMNVPFIY 383
Query: 406 R------------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKI 434
R P++ DV A +PE PV S+ +++
Sbjct: 384 RIHEDPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRS 443
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A + + + H L Y FTSPIRRY DL+ H
Sbjct: 444 MQQAKY-YPESLGHFGLSTDFYTHFTSPIRRYPDLIVH 480
>gi|300774533|ref|ZP_07084396.1| ribonuclease R [Chryseobacterium gleum ATCC 35910]
gi|300506348|gb|EFK37483.1| ribonuclease R [Chryseobacterium gleum ATCC 35910]
Length = 717
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 41/332 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ PG++
Sbjct: 255 TDEEVAKRWDMRKICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVPGTIL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM PE L+ + SLR E + L+ I +
Sbjct: 315 DDEAYQRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDQAEIQKQWFGR 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE A E + + A E+ L + A + R+++GAI E R +
Sbjct: 375 TVIHSDRRFTYEEAQERIETGKGDLAEEINTLDKLAKIMRNERIRKGAITFDRSEVRFNL 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYR---- 406
E+ EP + +Y + D + L+ E M+L + ++ + G N YR
Sbjct: 435 --DENNEP-VGVYFKISKD-SNHLIEEFMLLANKKVSEFVSLTRKGEITNNTFIYRVHDD 490
Query: 407 ---GQPQSNID-VSAFA-------------------HLPEGPVRSSAIVKI-MR--AAAI 440
+ +S D V+ F H +G + I + MR + A+
Sbjct: 491 PDPAKLESLRDFVATFGYKMNLANTKKVAESLNKLLHDVKGKGEENMIETLAMRSMSKAV 550
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H LG Y FTSPIRRY DLLAH
Sbjct: 551 YSTEPIGHYGLGFEYYSHFTSPIRRYPDLLAH 582
>gi|378975443|ref|YP_005224053.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
DAL-1]
gi|374680843|gb|AEZ61133.1| putative exoribonuclease II [Treponema pallidum subsp. pallidum
DAL-1]
Length = 700
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 273 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 328 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 387 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 440
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 441 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 500
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 501 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 555
Query: 467 MDLLAHYQV 475
+DLLAH Q+
Sbjct: 556 VDLLAHQQL 564
>gi|378973318|ref|YP_005221924.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378974385|ref|YP_005222993.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378982294|ref|YP_005230601.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374677643|gb|AEZ57936.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678713|gb|AEZ59005.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679782|gb|AEZ60073.1| putative exoribonuclease II [Treponema pallidum subsp. pertenue
str. Gauthier]
Length = 700
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 273 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 327
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 328 GASLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 386
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 387 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 440
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 441 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 500
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 501 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 555
Query: 467 MDLLAHYQV 475
+DLLAH Q+
Sbjct: 556 VDLLAHQQL 564
>gi|421756803|ref|ZP_16193699.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700103]
gi|409093238|gb|EKM93191.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700103]
Length = 742
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A R + G K+YI +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSGSWKLYIAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|315613003|ref|ZP_07887914.1| ribonuclease R [Streptococcus sanguinis ATCC 49296]
gi|315315113|gb|EFU63154.1| ribonuclease R [Streptococcus sanguinis ATCC 49296]
Length = 784
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDELTFTIDGADAKDLDDAVHIKPLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSL--NPQVDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGIAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|389574677|ref|ZP_10164736.1| ribonuclease R [Bacillus sp. M 2-6]
gi|388425603|gb|EIL83429.1| ribonuclease R [Bacillus sp. M 2-6]
Length = 779
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L R+DL + + ID +A +LDDA++ +L DG+ K+ +H+AD + Y+ S D
Sbjct: 242 EKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ +++ G + ++ + S
Sbjct: 302 QEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMIIDRSGKVVKHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAIDT 347
+IK T +TY ++L ++++ EL + + + A + R+++GA+D
Sbjct: 362 VIKTTERMTYSDVNKIL---VDQDEELLDKYEPLVPMFQEMEKLAEILRDKRMERGAVDF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V D E V + A +L+ E M++ E +A + + N+ YR
Sbjct: 419 DFKEAKVLV----DDEGAAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRI 474
Query: 408 QPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+ N + V+ F ++ PE V + +++ M+
Sbjct: 475 HEEPNPEKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMK 534
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D + + H L Y FTSPIRRY DL+ H
Sbjct: 535 QAKYD-PESIGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>gi|160902437|ref|YP_001568018.1| ribonuclease R [Petrotoga mobilis SJ95]
gi|160360081|gb|ABX31695.1| ribonuclease R [Petrotoga mobilis SJ95]
Length = 737
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 47/336 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E+ + RKD ++ ID D A + DDA+ +L +G + +H+AD + Y++ S
Sbjct: 237 SENEINGRKDFRKETIFTIDGDTAKDFDDAVGIKKLDNGNYLLGVHIADVSHYVKSNSAL 296
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A KRGTSV+L PM P +L+ SL +GE + +T+S+++ D G++ +
Sbjct: 297 DREAYKRGTSVYLIDTVIPMLPFELSNWICSLVEGE--DRLTMSLLMEIDPYGNLVNSKI 354
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGA-I 345
N +I+ LTY ELL N EE EL+++ E L + R ++G+ I
Sbjct: 355 YNGVIRSAKRLTYRKVNELLSDNCSEEVKKEIEFLKPELEMMRELMELLSEKRKERGSII 414
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D + E + D + + + + + +++ E M+L E +A+Y L Y
Sbjct: 415 DIESNEVHFEF----DEKGYVKDIIPVERGLSEKMIEEFMVLANETVASYFDVQGLPFIY 470
Query: 406 RGQPQSNIDV-----------SAFAHLPEG----------------PVRSSAIVKIMRAA 438
R + DV P+ P+ + + ++R+
Sbjct: 471 RIHENPDPDVLLQLRNYLDMLGINVKFPQNIHPKVLQEILEKTKNHPLSKNIQMMLVRSM 530
Query: 439 --AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A+ + V H L Y FTSPIRRY DL+ H
Sbjct: 531 KRALYSEENVGHFGLASSSYTHFTSPIRRYPDLVVH 566
>gi|410696912|gb|AFV75980.1| ribonuclease R [Thermus oshimai JL-2]
Length = 702
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 158/334 (47%), Gaps = 53/334 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L R+D L+V+ ID +A + DDA+ L DG ++ +H+AD + Y++ GS D
Sbjct: 220 EAELRRREDFRALRVFTIDGVDAKDFDDAIHIEVLPDG-YRIGVHIADVSHYVKEGSPLD 278
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD-- 296
++A RGTSV+LP PMFPE+L+ SL GE + + +SV+ H D + V
Sbjct: 279 QEAFLRGTSVYLPGRVLPMFPERLSNGVCSLVPGE--DRLVLSVLFHLDKDLKVKRVRFV 336
Query: 297 NSIIKPTYMLTY---ESATELLHLNLEEEAEL-----KILSEAAALRLQWRLQQGAIDTA 348
+I+ LTY E+ E L EE A L L LR Q RL++GA+D +
Sbjct: 337 EGVIRSVARLTYTEVEAFAEGFGLP-EEHAFLAEDLRHFLHLTQRLR-QRRLEEGALDFS 394
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIA-------------- 393
E +++V + L++ Q +P R L+ E+M+L A+A
Sbjct: 395 FPEVKVEVGEGGE------LHLIPQQEPKARSLIEELMLLANRAVAEHLVKKGLPGLFRV 448
Query: 394 -------TYGSFN------NLALP--YRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAA 438
YG LP G+ + + A H PE PV ++ +++ +R A
Sbjct: 449 HEEPLEEAYGRLRTALQRLGYTLPEEVEGKALQRVLLEAKGH-PEEPVVANLVLRSLRLA 507
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L + Y+ FTSPIRRY DL+ H
Sbjct: 508 RYAAEN-LGHFGLAMAHYLHFTSPIRRYPDLVVH 540
>gi|403414903|emb|CCM01603.1| predicted protein [Fibroporia radiculosa]
Length = 1469
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 151/345 (43%), Gaps = 53/345 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDL + + + ID D A +LDDALS DG V +HVAD + +++P + D+DA KR
Sbjct: 896 RKDLRNERAFTIDPDTAKDLDDALSVKVNDDGTYDVAVHVADVSYFVKPNTALDRDARKR 955
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P L+ + SL GE A +V + DG + + ++IK +
Sbjct: 956 ATSVYLVQRAVPMLPPALSEQMCSLVPGEERLAFSVIFTMTKDGKVLKKWFGKTLIKTSA 1015
Query: 305 MLTYESATELL------------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
L+Y A ++ H + +++++ E A R Q G I + +L+
Sbjct: 1016 KLSYTDAQSIIDGHAVEFEVAPEHAVADVSKDVRVIHELAKQVRARRFQIGCIKSQSLKL 1075
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALPYRGQPQ 410
K+ +D PI E A LV E M+L A+A +F+ AL R P
Sbjct: 1076 TFKLD--DDGVPIDCSQYERTE--AHHLVEEFMLLTNVAVAQQIAVNFSEQALLRRHDPP 1131
Query: 411 SNIDVSAFAHLPE---------GPV-----------------------RSSAIVKIMRAA 438
++AF E P+ ++S+ K A
Sbjct: 1132 IERRLAAFVERAERMGFKVDASSPITLMKSLDAVNDPSARKILELFLRKASSAAKYFCAG 1191
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG--LQAAA 481
+D K H L +P Y FTSPIRRY D+L H Q+ LQ A
Sbjct: 1192 MLDIAK-YGHFALNIPLYTHFTSPIRRYADILVHRQLDSILQGGA 1235
>gi|421751218|ref|ZP_16188272.1| ribonuclease R [Francisella tularensis subsp. tularensis AS_713]
gi|424673939|ref|ZP_18110867.1| ribonuclease R [Francisella tularensis subsp. tularensis 70001275]
gi|409088527|gb|EKM88593.1| ribonuclease R [Francisella tularensis subsp. tularensis AS_713]
gi|417435482|gb|EKT90383.1| ribonuclease R [Francisella tularensis subsp. tularensis 70001275]
Length = 750
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A R + G K+YI +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSGSWKLYIAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|410096552|ref|ZP_11291539.1| ribonuclease R [Parabacteroides goldsteinii CL02T12C30]
gi|409226516|gb|EKN19425.1| ribonuclease R [Parabacteroides goldsteinii CL02T12C30]
Length = 726
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 146/327 (44%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L +G +V +H+AD T Y++P SL D++A R
Sbjct: 270 REDFRKVLTFTIDPKDAKDFDDALSVRQLDNGNWEVGVHIADVTHYVKPESLIDREAESR 329
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L + SLR E + L + ++ + + ++IK
Sbjct: 330 ATSVYLVDRTIPMLPERLCNQICSLRPDEEKLCFSAIFELDEEANVKKSRIGRTVIKSDR 389
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRL-QWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + + ++ +A A +L + R + GA++ E R ++ P
Sbjct: 390 RFTYEEAQLVIETGEGDYKDEILVLDALAKKLREKRFKNGAVNFDRFEVRFEIDETGKP- 448
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----------------------GSFNN 400
I+ Y+++ D A +L+ E M+L +A + N
Sbjct: 449 --ISTYIKESKD-ANKLIEEFMLLANRTVAEFVGKVPKGKTKKTFVYRIHDLPDPDKLEN 505
Query: 401 LA-------LPYRGQPQSNIDVS--------AFAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
A + + S ID+S PE + + ++ M+ A +
Sbjct: 506 FAAFIRRFGYKMKTEGSSKIDISRNLNRLLDEVHDKPEENLIETLAIRSMQKARYT-TEN 564
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY D++ H
Sbjct: 565 IGHYGLAFEYYTHFTSPIRRYPDMMVH 591
>gi|15639792|ref|NP_219242.1| exoribonuclease II (rnb) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189026030|ref|YP_001933802.1| exoribonuclease II [Treponema pallidum subsp. pallidum SS14]
gi|3323115|gb|AAC65772.1| exoribonuclease II (rnb) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018605|gb|ACD71223.1| exoribonuclease II [Treponema pallidum subsp. pallidum SS14]
Length = 759
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 146/309 (47%), Gaps = 35/309 (11%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D THL YAID + + DDA+S DG +IHVA P + + P S +D A R
Sbjct: 274 RTDCTHLAAYAIDGEGTRDPDDAISF----DG-TYFWIHVASPAELVLPDSHADACARTR 328
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S++LP M + + ++ +L + V A++ ++L G I+ V S+++ T
Sbjct: 329 GRSLYLPEGAVRMLSD-VVVDTCALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTR 387
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP----- 359
+ E+ ++ + L+ L + A + R +GA+D + ++V P
Sbjct: 388 LSYAEADSQ------RDTPALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETG 441
Query: 360 ------------EDPEPIINLYVE-DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
+ + +++E Q+ +M +V E M+L GEA A + +NLA PY
Sbjct: 442 QAGKEMNAGDVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPYV 501
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRY 466
Q + + V LP G + M+A + V H LGL Y Q TSP+RRY
Sbjct: 502 SQERPQLPVQ----LPAGLAGEYKKRRAMKARRVSTTAAV-HAALGLSQYSQVTSPLRRY 556
Query: 467 MDLLAHYQV 475
+DLLAH Q+
Sbjct: 557 VDLLAHQQL 565
>gi|254368573|ref|ZP_04984589.1| hypothetical protein FTAG_01559 [Francisella tularensis subsp.
holarctica FSC022]
gi|157121476|gb|EDO65667.1| hypothetical protein FTAG_01559 [Francisella tularensis subsp.
holarctica FSC022]
Length = 618
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 23/294 (7%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLTHLK YAID + +++ DDA+S + K+++H++DP+ I G D A R
Sbjct: 232 RVDLTHLKAYAIDDEGSNDPDDAIS---WDSQKNKMWVHISDPSSSISFGDEVDLQARAR 288
Query: 245 GTSVFLPTATYPMFP-EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
G+++++P M P + A G+ L+ EV AV+V + G I + + S IK T
Sbjct: 289 GSNLYVPEQIVMMLPPQATAKLGLGLQ--EVSPAVSVGFRIDEQGDIHDIEICFSNIKVT 346
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV-ANPEDP 362
+YE E +H EL + A RL +GA++ E +I + AN
Sbjct: 347 -RYSYEFVEENMHT-----LELGDIVSYAKYFTDKRLSKGAVELDFPEIKISLDANK--- 397
Query: 363 EPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHL 421
N+ + D R LV + M++ G A+ + NN+++ + QP+ ++ ++
Sbjct: 398 ----NVKLTDLPRLNSRTLVRDTMLMAGVAVGQFCIKNNISVSFSTQPEHDLGQDGLENI 453
Query: 422 PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ K+ R +P H +GL YVQ TSP+RRY+DL+ HYQ+
Sbjct: 454 DSIADMFAKRKKLQRGRYS--TQPSMHAGMGLEAYVQVTSPLRRYLDLIVHYQL 505
>gi|150391304|ref|YP_001321353.1| ribonuclease R [Alkaliphilus metalliredigens QYMF]
gi|149951166|gb|ABR49694.1| ribonuclease R [Alkaliphilus metalliredigens QYMF]
Length = 706
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 183/404 (45%), Gaps = 60/404 (14%)
Query: 120 KDSDRVLLAVAQRPDGKKN------WMVYDQNGASCSI----KPQQVTFVVPGVEKFDHK 169
K+ D+V+ A+ + P ++N ++ ++ A I + ++ P + + K
Sbjct: 172 KNGDKVVCAITKWPGARRNPEGKVIEIIGHKDDAGTDILAIMRKHKLNPNFPQAVEAEIK 231
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
D+ + + +E +R DL L++ ID +A +LDDA+S RL++G ++ +H+AD T
Sbjct: 232 DLPDEVPDSEKK--DRVDLRDLQMVTIDGADAKDLDDAVSIERLEEGNYRLGVHIADVTH 289
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y+ + DK+A+ R TSV+L PM P KL+ SL A++V + + S+G
Sbjct: 290 YVREETALDKEALARATSVYLVDRVIPMLPRKLSNGLCSLNPKVDRLALSVFMEVASNGK 349
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW----------- 338
+ ++ + SIIK + YE +++L ++AELK + QW
Sbjct: 350 VVKHEIVESIIKTDERMIYEEVSDILE---HDDAELKQKYDYLVQDFQWMEKLATILRGR 406
Query: 339 RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF 398
R ++GAID E+++ + + P + L + A R++ E M++C E +A + +
Sbjct: 407 REERGAIDFDFDESKVLLDDKGRPYDVKKL----ERRVANRIIEEFMLVCNETVAEHFYW 462
Query: 399 NNLALPYRGQ--------PQSNIDVSAFAHLPEG---------------PVRSSAIVKIM 435
N+ YR + N + F + +G ++ ++
Sbjct: 463 MNIPFIYRVHEDPSAERLEEFNKFIHNFGYHLKGLTTEIHPKALQDLLKKIKGKKEETVI 522
Query: 436 RAAAIDFRKPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
+ K R+ G GL Y FTSPIRRY DL H
Sbjct: 523 NTLMLRSLKKARYSAQSLGHFGLAADYYSHFTSPIRRYPDLEIH 566
>gi|418962661|ref|ZP_13514515.1| ribonuclease R [Streptococcus anginosus subsp. whileyi CCUG 39159]
gi|383345196|gb|EID23329.1| ribonuclease R [Streptococcus anginosus subsp. whileyi CCUG 39159]
Length = 779
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 158/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R +L + + ID +A +LDDA+ +L++G ++ +H+AD + Y++ GS
Sbjct: 242 SEKDFEGRLNLRNEITFTIDGADAKDLDDAVHIKKLKNGHFELGVHIADVSYYVKEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ + G + ++++
Sbjct: 302 DKEALNRATSVYVTDRVIPMLPERLSNGICSLNPN--VDRLTQSAIMEINQKGQVIKHTI 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK T+ +TY +++ + E++A K ++E + R ++GA++
Sbjct: 360 TQTVIKTTFRMTYSDVNDMIAGDEEKQAAFKAILPSVEAMAELHTILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 420 TKEAKILVNKTGRPVDI----VLRQRGLAERMIESFMLVANETVAEHFATLNLPFIYRIH 475
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S F G S SA+ IM+A + V
Sbjct: 476 EEPKAEKVQKFIDYASTFGVRVYGTANSMSQSALQDIMKAVQGQPYEEVLSMMLLRSMQQ 535
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
+G GL Y FTSPIRRY DLL H V
Sbjct: 536 ARYSEHNYGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 572
>gi|320103846|ref|YP_004179437.1| VacB and RNase II family 3'-5' exoribonuclease [Isosphaera pallida
ATCC 43644]
gi|319751128|gb|ADV62888.1| VacB and RNase II family 3'-5' exoribonuclease [Isosphaera pallida
ATCC 43644]
Length = 826
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 142/327 (43%), Gaps = 39/327 (11%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL HL ID +A + DDA+S R G + +HVAD + + PGS D +A
Sbjct: 317 RRHDLRHLPTVTIDPVDARDFDDAISLERDARGHWTLRVHVADVSALVAPGSPMDVEARA 376
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+LP PM PE L+ SL+ GE AVTV++ L +G + + I+
Sbjct: 377 RGTSVYLPDRVLPMLPEALSNGIASLQPGEERQAVTVTLDLTPEGIVTAAQFARTWIRVD 436
Query: 304 YMLTYESATELL--------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
TYE A ++ L E L + E A + R ++GA++ ET++
Sbjct: 437 RRFTYEEAHAIMTNAFDAPEDLAEEHRTLLMQMLELAMILRDRRFRRGALELTMPETKLL 496
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------------------GS 397
+ +D + +E D + +++ E M+ EA+A Y
Sbjct: 497 L---DDQGKVAGARLESH-DESHQVIEEFMLAANEAVANYLAQHEVPFLRRCHEDPDPAK 552
Query: 398 FNNLALPYRG------QPQSNIDVS-AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV 450
+ A RG QPQS ++ P+R + ++R+ P G
Sbjct: 553 LDQFAEFVRGLGLTLDQPQSRSELQRVLDQTASTPLRHAVHYALLRSLKQATYTPESEGH 612
Query: 451 LGLPG--YVQFTSPIRRYMDLLAHYQV 475
L Y FTSPIRRY DLL H Q+
Sbjct: 613 YALASREYCHFTSPIRRYPDLLVHRQL 639
>gi|418973049|ref|ZP_13521089.1| ribonuclease R [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383350495|gb|EID28363.1| ribonuclease R [Streptococcus pseudopneumoniae ATCC BAA-960]
Length = 784
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 156/330 (47%), Gaps = 49/330 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+
Sbjct: 249 GRLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALN 308
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
R TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 309 RATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIK 366
Query: 302 PTYMLTYESATELLHLNLEEEAELKILSEAAAL------RLQ-WRLQQGAIDTATLETRI 354
+Y +TY ++L + E+ E + + + L RL+ R+++GA++ T E +I
Sbjct: 367 TSYRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLDTNEAKI 426
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 427 LVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPK 480
Query: 410 ----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 481 AEKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYS 540
Query: 447 --RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 541 EYNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|313679951|ref|YP_004057690.1| RNAse R [Oceanithermus profundus DSM 14977]
gi|313152666|gb|ADR36517.1| RNAse R [Oceanithermus profundus DSM 14977]
Length = 775
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 148/330 (44%), Gaps = 47/330 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
L R+D L V+ ID +A + DDA+ RL+ G +V IH+AD Y+ GS D++
Sbjct: 235 TLRAREDFRQLPVFTIDGADAKDFDDAVHLERLEGGGWRVGIHIADVAHYVREGSALDRE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNS 298
A +R TSV+LP PM PEK++ SL GE + +T+SVV L G + +Y +
Sbjct: 295 AYERATSVYLPGRVLPMLPEKISNGVCSLVPGE--DRLTMSVVADLDEKGRVRDYRIVQG 352
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL-RLQW-----RLQQGAIDTATLET 352
+I+ LTY ELL EA + + L RL RL GA+D T E
Sbjct: 353 VIRSKARLTYGQVEELLSGGRLPEAARFLEDDVRELYRLTRHLKAERLAAGALDFDTREV 412
Query: 353 RIKVANPEDPEPIINLY-VEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--- 408
++ D + NL+ + + A L+ E+M+L +A + + YR
Sbjct: 413 KV------DFDEGGNLHLIPIREGEARSLIEELMLLANRTVARHLDERGIPTLYRVHEDP 466
Query: 409 -------------------PQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDF 442
P ++ D +A + PEGP S +++ M A
Sbjct: 467 VADRYKTLVEALSRMGYHLPAADPDPAAMQRVLEAARGKPEGPAVSMLVLRSMSLARYAH 526
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y+ FTSPIRRY DL+ H
Sbjct: 527 EN-LGHFGLAFEDYLHFTSPIRRYPDLVVH 555
>gi|330444259|ref|YP_004377245.1| hypothetical protein G5S_0568 [Chlamydophila pecorum E58]
gi|328807369|gb|AEB41542.1| conserved hypothetical protein [Chlamydophila pecorum E58]
Length = 674
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 94/340 (27%), Positives = 152/340 (44%), Gaps = 44/340 (12%)
Query: 169 KDISNFLQKA-EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK L RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 189 QEASQFSQKHITQTLRTRKDLRDLLCFTIDSVTAKDFDDAVSLTYDNNNNYILGVHIADV 248
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR SV+ P PM P L+ SL+ AV+V + +
Sbjct: 249 SHYVTPHSHLDKEAEKRCNSVYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKN 308
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQ 342
G++++Y + S+I+ Y +TY+ +L H + +K LS+ A R Q+
Sbjct: 309 GNLSDYQIFRSVIRSKYRMTYDEVDNILEKKQTHPISKTLHAMKSLSKKLA---DIREQR 365
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
G I + + N ++P + VE+ + +L+ E M+ E IA + S +
Sbjct: 366 GCIRFVLPSYTMSLDNLQEPVAL----VENHQTDSHKLIEEFMLKANEIIAYHISHQGIT 421
Query: 403 LPYR-GQPQSNIDVSAFAHL-----------------------------PEGPVRSSAIV 432
LP+R +P ++ ++ +F + P V S V
Sbjct: 422 LPFRIHEPPNDDNLISFQEIAKSMGFDITLTPTQEPDYQYLLQTTTSGHPLEQVIHSQFV 481
Query: 433 KIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 482 RSMKTASYSIENKGHYG-LKLDYYTHFTSPIRRYIDLIVH 520
>gi|134301465|ref|YP_001121433.1| ribonuclease R [Francisella tularensis subsp. tularensis WY96-3418]
gi|421753074|ref|ZP_16190078.1| ribonuclease R [Francisella tularensis subsp. tularensis 831]
gi|421758670|ref|ZP_16195513.1| ribonuclease R [Francisella tularensis subsp. tularensis 70102010]
gi|134049242|gb|ABO46313.1| ribonuclease R [Francisella tularensis subsp. tularensis WY96-3418]
gi|409088290|gb|EKM88364.1| ribonuclease R [Francisella tularensis subsp. tularensis 831]
gi|409091949|gb|EKM91933.1| ribonuclease R [Francisella tularensis subsp. tularensis 70102010]
Length = 765
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A R + G K+YI +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHRTKSGSWKLYIAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|406884788|gb|EKD32133.1| hypothetical protein ACD_77C00174G0023 [uncultured bacterium]
Length = 705
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 162/354 (45%), Gaps = 46/354 (12%)
Query: 161 PGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
P VEK + + IS + E + R+D + + ID +A + DDALS +L +G +V
Sbjct: 197 PKVEK-EAEKISEKIDPEE--IKRRRDFRGVTTFTIDPTDAKDFDDALSLKKLDNGNWEV 253
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
+H+AD T Y+ PG+L +++A++R TSV+L T PM PEKL+ + SLR E +
Sbjct: 254 GVHIADVTHYVRPGTLVEQEALERATSVYLVDRTVPMLPEKLSNKLCSLRPNEEKLCFSA 313
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLN---LEEEAELKILSEAAALRLQ 337
L+ I +II+ Y YE A + L+ E LK+ A++LR +
Sbjct: 314 VFELNEKAKIITRWFGRTIIESDYRFDYEEAQNTIETKEGPLKNEI-LKLHQLASSLRNE 372
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-- 395
R +GAI E +++V P I +Y ++ D L+ E M+L + +A +
Sbjct: 373 -RFSKGAISFERPEMKVEVDEAGKP---IRVYQKESKDSNW-LIEEFMLLANKEVAFFVG 427
Query: 396 -GSFNNLALPYRGQPQSNID--------VSAFAH--LPEGPVR--SSAIVKIMRA----- 437
++ YR + N+D V F + P R S I K++
Sbjct: 428 GKGRDSKTFVYRIHEEPNMDKVTILRTFVKHFGYDMSPTKNARELSGEINKLLSTVKGRP 487
Query: 438 --AAID---FRKPVR---------HGVLGLPGYVQFTSPIRRYMDLLAHYQVGL 477
+AI+ R R H L Y FTSPIRRY D++ H + L
Sbjct: 488 EESAIEIMALRSMARARYSTDNAGHYGLAFDYYTHFTSPIRRYPDMMVHRLLAL 541
>gi|389815599|ref|ZP_10206862.1| ribonuclease R [Planococcus antarcticus DSM 14505]
gi|388465805|gb|EIM08119.1| ribonuclease R [Planococcus antarcticus DSM 14505]
Length = 774
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L +R+DL +V ID +A +LDDA+ ++ +DG K+ +H+AD + Y+ GS D++
Sbjct: 246 DLTDRRDLRGEQVVTIDGADAKDLDDAVQVVKYEDGTYKLGVHIADVSHYVTEGSAIDRE 305
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TS++L PM P +L+ SL ++ ++ + G + + + S+I
Sbjct: 306 AYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHEIFQSVI 365
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+ +TY E+L + +E E +++ E A + R+++GAID E+
Sbjct: 366 NTSARMTYTDVYEILEQDNQELKERYSELVPMFELMKELAGVLSAKRMRRGAIDFDFKES 425
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR---- 406
++ V P +++ V ++ A RL+ E M+ E +A + F+ + +P YR
Sbjct: 426 KVLVDENGYP---VDVVVRERT-VAERLIEEFMLAANETVAEH--FHRMEVPAIYRIHED 479
Query: 407 GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+P+ +N V + A PE PV S+ +++ M+ A
Sbjct: 480 PKPEKLQRFFEFVTNFGIVVKGSGTQIHPRALQEIVESIAGTPEEPVVSTMMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 540 YS-SESLGHFGLSTEFYTHFTSPIRRYPDLIVH 571
>gi|15643485|ref|NP_228531.1| vacB protein [Thermotoga maritima MSB8]
gi|403252461|ref|ZP_10918771.1| ribonuclease R [Thermotoga sp. EMP]
gi|418045107|ref|ZP_12683203.1| ribonuclease R [Thermotoga maritima MSB8]
gi|7674335|sp|Q9WZI1.1|RNR_THEMA RecName: Full=Ribonuclease R; Short=RNase R; AltName: Full=VacB
protein homolog
gi|4981247|gb|AAD35804.1|AE001743_6 vacB protein [Thermotoga maritima MSB8]
gi|351678189|gb|EHA61336.1| ribonuclease R [Thermotoga maritima MSB8]
gi|402812474|gb|EJX26953.1| ribonuclease R [Thermotoga sp. EMP]
Length = 710
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 40/328 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+KV E+ + ++++ V + A +L+ E MI E +A L YR + +
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDP 477
Query: 414 DV--------------SAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+ + F+H + + P+RSS ++R+ V
Sbjct: 478 ETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAV 537
Query: 447 RHGVLGLP--GYVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 538 NIGHFGLASYAYTHFTSPIRRYPDLVVH 565
>gi|383937844|ref|ZP_09991079.1| ribonuclease R [Streptococcus pseudopneumoniae SK674]
gi|383715274|gb|EID71245.1| ribonuclease R [Streptococcus pseudopneumoniae SK674]
Length = 784
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 156/329 (47%), Gaps = 49/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+ R
Sbjct: 250 RLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALNR 309
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 310 ATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIKT 367
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAAL------RLQ-WRLQQGAIDTATLETRIK 355
+Y +TY ++L + E+ E + + + L RL+ R+++GA++ T E +I
Sbjct: 368 SYRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLDTNEAKIL 427
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP-- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 428 VDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPKA 481
Query: 410 ---QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV---------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 482 EKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYSE 541
Query: 447 -RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 542 YNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|402846031|ref|ZP_10894350.1| ribonuclease R [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402268583|gb|EJU17950.1| ribonuclease R [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 755
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 148/341 (43%), Gaps = 51/341 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R+D + ID +A + DDALS L +G +V +H+AD + Y++PGS+ D
Sbjct: 268 EEELAQREDFRGVLTCTIDPRDAKDFDDALSFRSLPEGGYEVGVHIADVSHYVQPGSIID 327
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A KR TSV+L T PM PE+L+ SLR E A + L + + + +
Sbjct: 328 DEAYKRATSVYLVDRTIPMLPERLSNFLCSLRPDEDKYAYSCIFSLDEEAQLRSARIART 387
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVA 357
+I+ TYE A E++ + AE + A +L+ R + G+I E R ++
Sbjct: 388 VIRSQRRFTYEEAQEIIETGKGDHAEAILTLHRLAQKLRARRFEVGSIAFDRPEVRFELD 447
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT---------------YGSFNNLA 402
P +++Y++ ++ PA +L+ E M+L +A G A
Sbjct: 448 EEGKP---LSVYIK-ESKPAHQLIEEFMLLANRTVAERIAEPARKDISPALRLGRGGKPA 503
Query: 403 LPYRGQPQSNID--------VSAFAHLPEGPVRSSAIVKIMRAAAIDFR-KP-------- 445
YR + + V F + + SS I K + A D + KP
Sbjct: 504 FVYRIHEAPDEEKLRSLADYVRRFGYKLKVEGGSSVIAKSLNALLADIKGKPEEDMLTML 563
Query: 446 --------------VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY DL+ H
Sbjct: 564 AIRSMAKARYTTTHIGHYGLGFDSYTHFTSPIRRYPDLMVH 604
>gi|417936096|ref|ZP_12579413.1| ribonuclease R [Streptococcus infantis X]
gi|343403005|gb|EGV15510.1| ribonuclease R [Streptococcus infantis X]
Length = 780
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 157/334 (47%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDLEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I+ + A R++ M++ E +A + S +L YR
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGTAERMIESFMLIANETVAEHYSKLDLPFIYRIH 476
Query: 407 -----GQPQSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G + +A+ IMRA + V
Sbjct: 477 EEPKAEKVQKFIDYASSFGLRIYGTASEISQAALQDIMRAVEGEPYADVLSMMLLRSMQQ 536
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 537 ARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|386580292|ref|YP_006076697.1| exoribonuclease R [Streptococcus suis JS14]
gi|319758484|gb|ADV70426.1| exoribonuclease R [Streptococcus suis JS14]
Length = 789
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEQDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DKEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNQEKLATYKAIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|164686797|ref|ZP_02210825.1| hypothetical protein CLOBAR_00392 [Clostridium bartlettii DSM
16795]
gi|164604187|gb|EDQ97652.1| ribonuclease R [Clostridium bartlettii DSM 16795]
Length = 732
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 182/404 (45%), Gaps = 60/404 (14%)
Query: 120 KDSDRVLLAV------AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISN 173
KD+D+V+ + ++P+GK ++ + I +P E+F HK +
Sbjct: 175 KDNDKVVCKITVWPTEGRKPEGKITEVIGQKGERGVEIDSIIRAHGLP--EEFPHKVLEE 232
Query: 174 ----FLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+ E+ + R DL LK + ID ++A +LDDA+S L++G K+ +H+AD +
Sbjct: 233 ADRVIVPIPEEEIKRRMDLRDLKTFTIDGEDAKDLDDAVSIEVLENGNYKLGVHIADVSH 292
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y+ S DK+A+KR TSV+L PM P++L+ SL E ++V + +++DG
Sbjct: 293 YVREHSKLDKEAIKRATSVYLVDKVIPMLPKQLSNGVCSLNPFEDKLTLSVFMEINADGK 352
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQ 341
+ +Y + SII +TY +++L + E+ E + A + ++ R +
Sbjct: 353 VIKYDIAESIINSKARMTYTEVSDILEKDDEKLKSTFSNLVEEFHNAEDLARILMKRRER 412
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+G+ID E++I + N E I Y + + R++ E M++ E +A + +
Sbjct: 413 RGSIDFDFPESKI-ILNSEGKVADIKSY---ERRISNRMIEEFMLVTNETVAEHFFWLQT 468
Query: 402 ALPYR------GQPQSNID--VSAFAH-----------------------LPEGPVRSSA 430
YR + N+ ++ F + PE S+
Sbjct: 469 PFVYRIHEIPAAEKMENLSKFIATFGYSLKGDLEQIHPKEIQRVLKLIKGTPEEESISTI 528
Query: 431 IVKIMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+++ MR A P G GL Y FTSPIRRY DL H
Sbjct: 529 MLRSMRQARY---APQCVGHFGLAAQYYCHFTSPIRRYPDLQIH 569
>gi|423304593|ref|ZP_17282592.1| ribonuclease R [Bacteroides uniformis CL03T00C23]
gi|423310293|ref|ZP_17288277.1| ribonuclease R [Bacteroides uniformis CL03T12C37]
gi|392682489|gb|EIY75834.1| ribonuclease R [Bacteroides uniformis CL03T12C37]
gi|392684043|gb|EIY77375.1| ribonuclease R [Bacteroides uniformis CL03T00C23]
Length = 714
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 149/331 (45%), Gaps = 43/331 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+ G +V +H+AD T Y++ G + DK
Sbjct: 254 EEIARREDFRGVTTFTIDPKDAKDFDDALSIRKLKGGLWEVGVHIADVTHYVKEGGIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + V +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTEKGEVKNSRVVHTV 373
Query: 300 IKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TYE A E++ + + E+ L + A + + R + GAI+ E + ++
Sbjct: 374 IKSDRRFTYEEAQEIIETGKGDFQEEMLQLDKLAKILRENRFKAGAINFDRYEVKFEIDE 433
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQP 409
P +++Y ++ D A +L+ E M+L +A LPYR P
Sbjct: 434 KGKP---VSVYFKESKD-ANKLIEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHDLPDP 489
Query: 410 Q--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAID 441
+ + D+S + HL E + + ++ M+ A
Sbjct: 490 EKLDNLAQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQKARYS 549
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY D++ H
Sbjct: 550 VHN-VGHYGLAFDYYTHFTSPIRRYPDMMVH 579
>gi|323491515|ref|ZP_08096695.1| exoribonuclease II [Vibrio brasiliensis LMG 20546]
gi|323314240|gb|EGA67324.1| exoribonuclease II [Vibrio brasiliensis LMG 20546]
Length = 667
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 179/408 (43%), Gaps = 55/408 (13%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQ---NGASCSIKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + + P G + V A I P VT +
Sbjct: 116 RKGIKSDDLKEGDWVVAHLTRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ Q +D L R D+TH+ ID ++DDAL A + + G ++ I +AD
Sbjct: 176 EPAGIDNW-QIKDDADLQRVDMTHVPFVTIDGASTKDMDDALYAKKTESGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL Q E+ A+ +V +
Sbjct: 235 PTAYITPDSEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMQDEIRPALCCTVTISK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQ 337
DG IA + + IK L Y+ ++ L E + ++ L E + R
Sbjct: 295 DGVIADDIQFFAANIKSHARLVYDQVSDWLENGQSPEWQPSEQIATIVRDLYEFSLARAD 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR + + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 355 WREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANRLVEEAMITANICAGRTLK 410
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKI------------MR 436
G FN A +P+ DV +F + P+G P + ++V +
Sbjct: 411 ETFNSGVFNTHA---GFKPEKIADVLSFVN-PDGELPFSAESVVTLEGFAELRRWLGQQE 466
Query: 437 AAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ +D R +P+ H +GL Y +TSPIR+Y D++ H
Sbjct: 467 TSYLDNRIRKFQSYSEMGNQPLPHYAMGLDIYATWTSPIRKYGDMINH 514
>gi|419532199|ref|ZP_14071716.1| ribonuclease R [Streptococcus pneumoniae GA47794]
gi|379606369|gb|EHZ71117.1| ribonuclease R [Streptococcus pneumoniae GA47794]
Length = 784
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRA------AAIDFRKPVR-- 447
+P Q ID S+F G + A+ IMRA A + F +R
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLFMMLLRSM 534
Query: 448 ---------HGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|424738484|ref|ZP_18166922.1| ribonuclease R [Lysinibacillus fusiformis ZB2]
gi|422947689|gb|EKU42081.1| ribonuclease R [Lysinibacillus fusiformis ZB2]
Length = 823
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 156/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ + DG K+ +H+AD + Y+ GS+
Sbjct: 243 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGSVI 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ ++G++ + +
Sbjct: 303 DIEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVVAHEIFQ 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY+ ++L E E K ++E + + + R +GAID
Sbjct: 363 SVIKTTERMTYKDVYKILEEQDEALIERYEPLVPMFKNMAELSGILRRKREMRGAIDFDF 422
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
E+++ + N E I L + A +L+ + M+ E +A + + N+ YR
Sbjct: 423 KESKV-IVNEEGWPVDIELR---ERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHE 478
Query: 407 ---------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAA 438
P++ DV A +PE PV S+ +++ M+ A
Sbjct: 479 DPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRSMQQA 538
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + + H L Y FTSPIRRY DL+ H
Sbjct: 539 KY-YPESLGHFGLSTDFYTHFTSPIRRYPDLVVH 571
>gi|299536243|ref|ZP_07049556.1| ribonuclease R [Lysinibacillus fusiformis ZC1]
gi|298728229|gb|EFI68791.1| ribonuclease R [Lysinibacillus fusiformis ZC1]
Length = 841
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 156/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ + DG K+ +H+AD + Y+ GS+
Sbjct: 243 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGSVI 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ ++G++ + +
Sbjct: 303 DIEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVVAHEIFQ 362
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY+ ++L E E K ++E + + + R +GAID
Sbjct: 363 SVIKTTERMTYKDVYKILEEQDEALIERYEPLVPMFKNMAELSGILRRKREMRGAIDFDF 422
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
E+++ + N E I L + A +L+ + M+ E +A + + N+ YR
Sbjct: 423 KESKV-IVNEEGWPVDIELR---ERTVAEKLIEDFMLAANETVAEHFHWMNVPFLYRIHE 478
Query: 407 ---------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAA 438
P++ DV A +PE PV S+ +++ M+ A
Sbjct: 479 DPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRSMQQA 538
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + + H L Y FTSPIRRY DL+ H
Sbjct: 539 KY-YPESLGHFGLSTDFYTHFTSPIRRYPDLVVH 571
>gi|387825111|ref|YP_005824582.1| 3'-to-5' exoribonuclease RNase R [Francisella cf. novicida 3523]
gi|332184577|gb|AEE26831.1| 3'-to-5' exoribonuclease RNase R [Francisella cf. novicida 3523]
Length = 765
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 152/343 (44%), Gaps = 49/343 (14%)
Query: 173 NFLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
++L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y
Sbjct: 247 HYLDNISDDVVVGNRVDLRNEHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNY 306
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G +
Sbjct: 307 VEKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKL 366
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQ 342
+ Y +++I LTY +LL +E EL L E + Q R ++
Sbjct: 367 SRYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQER 426
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
GAID T+ET+I + + E II + D A RL+ E M++ A A + +
Sbjct: 427 GAIDFDTVETQIILNDYNHIESIIPRHRND----AHRLIEECMLVANVAAAKFTIKHKKT 482
Query: 403 LPYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIMRAAAIDFRKPVR--- 447
P+R + D FA+ G V A+ +++ A+I R
Sbjct: 483 SPFRVHSEPKEDRMETLKKYLAKHGIHFAYGKNGKVTPKALAQML--ASIKDRPDYDDIQ 540
Query: 448 ------------------HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 541 MMTLRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVH 583
>gi|302670656|ref|YP_003830616.1| ribonuclease R Rnr [Butyrivibrio proteoclasticus B316]
gi|302395129|gb|ADL34034.1| ribonuclease R Rnr [Butyrivibrio proteoclasticus B316]
Length = 804
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 157/339 (46%), Gaps = 49/339 (14%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q +E +++ R DL ++++ ID ++A +LDDA+S + G + +H+AD T Y++ S
Sbjct: 192 QISEADMMGRTDLRNVQMVTIDGEDAKDLDDAVSLTIDEKGLYHLGVHIADVTNYVQENS 251
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D++A+KRGTSV+L PM P +L+ SL GE A++ + + G + ++ +
Sbjct: 252 ALDREALKRGTSVYLVDRVIPMLPHRLSNGICSLNHGEDRLALSCLMTIDKSGVVIDHDI 311
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDT 347
S+I ++Y S ++L EE E + +++ +AL + R +GAID
Sbjct: 312 VESVINVDERMSYTSVAKILEDEDAEEIEKYSELVPMFRQMADLSALLRKKREDKGAIDF 371
Query: 348 ATLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
ET+I + NP D P Q + A +L+ + M+ E +A + +
Sbjct: 372 DFPETKIVLDEAGNPVDILP-------RQRNTATKLIEDFMLAANETVAEHFYYLQSPFV 424
Query: 405 YRGQPQSNID--------VSAFAH----LPEGPVRSSAIVKIMR------AAAIDFRKPV 446
YR Q + + VS F H + V+ + K+++ A+ R +
Sbjct: 425 YRIHEQPDPEKISTLSAFVSNFGHHIRMRKDVGVKPKELQKLLKQIEGSKEEAVICRMTL 484
Query: 447 R-------------HGVLGLPGYVQFTSPIRRYMDLLAH 472
R H L Y FTSPIRRY DL H
Sbjct: 485 RSMMQAKYSTECTGHFGLAFDYYCHFTSPIRRYPDLQIH 523
>gi|433447186|ref|ZP_20410819.1| exoribonuclease R [Anoxybacillus flavithermus TNO-09.006]
gi|432000020|gb|ELK20926.1| exoribonuclease R [Anoxybacillus flavithermus TNO-09.006]
Length = 758
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L R+DL + + ID ++A +LDDA++ +L +G K+ +H+AD + Y+ GS
Sbjct: 236 SEEDLQGRRDLRNEMIVTIDGEDAKDLDDAVTVTKLANGNYKLGVHIADVSHYVTEGSPI 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 296 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINDRGEVVSHEIFQ 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ T +TY +L E E ++++E A + R+++GAID
Sbjct: 356 SVIRTTERMTYTDVNRILVDKDEALREKYAPLVPMFELMAELADILRNKRMKRGAIDFDF 415
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P +I + A RL+ E M+ E IA + + N+ YR
Sbjct: 416 KEAKVLVDENGKPYDVIL----RERSVAERLIEEFMLAANETIAEHFHWMNVPFIYRVHE 471
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 472 DPKPEKLQRFLEFITNFGYIVKGTGNQIHPRALQEVLEAVRGEPEEMVVSTVMLRSMKQA 531
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 532 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 564
>gi|359414768|ref|ZP_09207233.1| ribonuclease R [Clostridium sp. DL-VIII]
gi|357173652|gb|EHJ01827.1| ribonuclease R [Clostridium sp. DL-VIII]
Length = 727
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 151/338 (44%), Gaps = 55/338 (16%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL LK+ ID ++A +LDDA+S +L +G K+ +H+AD T Y++ + D
Sbjct: 243 EEEYKGRRDLRDLKMVTIDGEDAKDLDDAVSIEKLSNGNYKLGVHIADVTHYVKENNPLD 302
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P KL+ SL + +T+S + D G + + +
Sbjct: 303 KEALKRATSVYLIDRVVPMLPRKLSNGICSLNPK--VDRLTLSCFMEIDHKGKVVNHEIV 360
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTA 348
SIIK +TY T++L N EE + K++ E + + R ++GAID
Sbjct: 361 ESIIKTNERMTYTDVTKILRDNDEELIKRYDYLYEDFKMMEELCKILREKRTRRGAIDFE 420
Query: 349 TLETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
E +I ++ P + +P + + + R++ E M+ E +A + + +L Y
Sbjct: 421 IAEAKITLNELGKPIEIKPY-------EREISNRMIEEFMLAANETVAEHMFWTHLPFVY 473
Query: 406 RGQPQSNIDVSAFAHLPE----------------------------GPVRSSAIVKIMRA 437
R N D A E G + + ++
Sbjct: 474 R--IHENPDEEKLAKFKEFVYNLGYNVHWTEEIVPKSFQEILEKVKGKNEETVVSTLLLR 531
Query: 438 AAIDFR-KPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ + + P G GL Y FTSPIRRY DL H
Sbjct: 532 SMMQAKYAPECSGHFGLAAQYYCHFTSPIRRYPDLQIH 569
>gi|358464768|ref|ZP_09174726.1| ribonuclease R [Streptococcus sp. oral taxon 058 str. F0407]
gi|357066297|gb|EHI76447.1| ribonuclease R [Streptococcus sp. oral taxon 058 str. F0407]
Length = 784
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 157/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRGELTFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L + R ++GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHETLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|392409991|ref|YP_006446598.1| exoribonuclease R [Desulfomonile tiedjei DSM 6799]
gi|390623127|gb|AFM24334.1| exoribonuclease R [Desulfomonile tiedjei DSM 6799]
Length = 665
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 142/286 (49%), Gaps = 17/286 (5%)
Query: 193 VYAIDVDEADELDDALSAMRLQDG-RIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
+ AID ++DDA+S R DG + + +H+ D + Y+E S D + R TS++LP
Sbjct: 278 LLAIDSSTTRDVDDAISLSR--DGDHLVLGVHITDASYYVEHNSSLDLEIRDRATSIYLP 335
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
T PM P L+ + SL G+ A+TV V + + ++++ SII+ LTYE A
Sbjct: 336 EITIPMMPRVLSEQAASLESGQDRLALTVLVRFGPEMQLLDFALKRSIIRINQRLTYEEA 395
Query: 312 TELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVE 371
E + + EA + + A++LR Q R++ GAI E ++V + + I ++V
Sbjct: 396 EEKIAVPGSTEALM--FAVASSLR-QKRIESGAIIFKDPEISVRVNHAGE----IEVFVR 448
Query: 372 DQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNIDVSAFAHLPEGPVRSS 429
++ PA LVSEMMIL A Y N + +R Q P I++ PV S
Sbjct: 449 NRETPAQILVSEMMILANNLFARYLRDNKIPGIFRSQGPPLEKIELGE----EYDPVASY 504
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K++ + P H LGL Y +SP+RRY DL+ Q+
Sbjct: 505 RSKKVLARGDLS-TDPDAHSTLGLDIYTTASSPLRRYPDLIVQRQL 549
>gi|449102772|ref|ZP_21739519.1| hypothetical protein HMPREF9730_00416 [Treponema denticola AL-2]
gi|448965574|gb|EMB46235.1| hypothetical protein HMPREF9730_00416 [Treponema denticola AL-2]
Length = 623
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 141/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
++LTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 ENLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGISRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV +D + +
Sbjct: 357 ISFEKADEE-----KTNANLKPLFEIAEKNRKKREAAGAVSIDMPEVQIKVETEDDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|332522458|ref|ZP_08398710.1| ribonuclease R [Streptococcus porcinus str. Jelinkova 176]
gi|332313722|gb|EGJ26707.1| ribonuclease R [Streptococcus porcinus str. Jelinkova 176]
Length = 782
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 53/338 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ +L+ R DL + ID +A +LDDA+ L +G ++ +H+AD + Y+ GS
Sbjct: 245 SDKDLVGRIDLRKEITFTIDGADAKDLDDAIHIKPLANGNYELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
D++A+ RGTSV++ PM PE+L+ SL + +T S ++ S+G + Y +
Sbjct: 305 DQEAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDSNGKVLNYQI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAA-------ALRLQWRLQQGAIDTA 348
S+I T+ +TY + ++L + E E +SE+ + + R+++GA++
Sbjct: 363 CQSVINTTFRMTYSAVNDMLAGDEEMLQEYAAISESVEHMAKLHKILERMRIKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
TLE RI V P +++ V + A R++ M+ E +A + + +N YR
Sbjct: 423 TLEARILVNEKGMP---VDIVVRTRG-IAERMIESFMLAANECVAEHFARSNYPFIYRIH 478
Query: 407 GQPQSN-----IDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV--------------- 446
+P+S ID ++ + ++ +A KI + A DF V
Sbjct: 479 EEPKSEKLQKFIDYASVFGI---QIKGTA-AKISQEALQDFMAKVDGKPGAEVLNMMLLR 534
Query: 447 ----------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 SMQQARYSETNHGHYGLAADYYTHFTSPIRRYPDLLVH 572
>gi|373956721|ref|ZP_09616681.1| ribonuclease R [Mucilaginibacter paludis DSM 18603]
gi|373893321|gb|EHQ29218.1| ribonuclease R [Mucilaginibacter paludis DSM 18603]
Length = 711
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 154/348 (44%), Gaps = 42/348 (12%)
Query: 161 PGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKV 220
P + D + IS+ + E + RKD + + ID +A + DDALS L +G ++
Sbjct: 234 PAEVEHDAEAISDIITPEE--IAKRKDFRDVLTFTIDPFDAKDFDDALSFKYLDNGNYEI 291
Query: 221 YIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV 280
IH+AD + YI P S DK+A +RGTSV+L PM PE+L+ SLR E +
Sbjct: 292 GIHIADVSHYIIPDSPLDKEAFERGTSVYLVDRVIPMLPERLSNGLCSLRPNEDKLCFSA 351
Query: 281 SVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELL-HLNLEEEAELKILSEAAALRLQWR 339
L + + +II TYE E++ + + E E+ IL++ A +
Sbjct: 352 VFELDQNAFVINEWFGKTIIHSNRRFTYEEVQEIIENGDGEYIKEITILNQLAYQLRDRK 411
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------ 393
+ GAI T E + K+ P I +YV+++ D A +L+ + M+L +A
Sbjct: 412 FKNGAISFETTEVKFKLDASGKP---IGVYVKERKD-AHKLIEDYMLLANRKVAEFVAKK 467
Query: 394 --------------------TYGSFNNLA--LPYRGQPQSNIDVS-AFAHL---PEGPVR 427
T F A Y+ +S+ +++ + HL EG
Sbjct: 468 AKGKNKYTFVYRSHDSPKQETLAGFAQFAARFGYKINTKSDKEIARSLNHLMEDVEGKKE 527
Query: 428 SSAIVKIM---RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + ++ A AI K H L Y FTSPIRRY D++ H
Sbjct: 528 QNVLTQLAIRSMAKAIYTTKKTSHYGLAFDYYTHFTSPIRRYPDVMVH 575
>gi|170288010|ref|YP_001738248.1| ribonuclease R [Thermotoga sp. RQ2]
gi|170175513|gb|ACB08565.1| ribonuclease R [Thermotoga sp. RQ2]
Length = 710
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 40/328 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLSNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----GQP 409
+KV E+ + ++++ V + A +L+ E MI E +A L YR P
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDP 477
Query: 410 QSNIDVSAF-------AHLPEG----------------PVRSSAIVKIMRAAAIDFRKPV 446
++ + + A+ P+ P+RSS ++R+ V
Sbjct: 478 ETIFQLRNYLEAMGIRANFPQNIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAV 537
Query: 447 RHGVLGLP--GYVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 538 NIGHFGLASYAYTHFTSPIRRYPDLVVH 565
>gi|406025405|ref|YP_006705706.1| ribonuclease R [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
gi|404433004|emb|CCM10286.1| Ribonuclease R [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
Length = 697
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/333 (29%), Positives = 145/333 (43%), Gaps = 43/333 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E + R+D+ H+ + ID +A + DDALS L +G +V IH+AD + Y+ P SL
Sbjct: 236 TEKEITKRRDMRHIPTFTIDPVDAKDFDDALSYQPLANGHHQVGIHIADVSHYVIPDSLL 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A R TSV+L PM PE L+ SLR E + L + G + + +
Sbjct: 296 DKEAYARNTSVYLVDRCIPMLPEILSNGLCSLRPNETKLTFSAIFELDAQGKVYDKWLGE 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+II +YE A + + + L +L+ A R Q+GAI+ ETR V
Sbjct: 356 TIIYSDKRFSYEEAQMAIDFQRGDFYQALTVLNHLAKQIHAKRSQKGAIN---FETRSLV 412
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-----NNL--ALPYRGQ- 408
+ + + + + + D A +L+ E M+L + +ATY ++ NL YR
Sbjct: 413 FDLDTNGKPLKVTSKCRTD-AHKLIEEFMLLANQEVATYAAYLKQKQENLRPTFIYRTHG 471
Query: 409 ---PQSNIDVSAFAHL--------------------------PEGPVRSSAIVKIMRAAA 439
P D F + E P+ S ++ M A A
Sbjct: 472 YPDPDKLNDFFLFVNQLGYKINRAKTSIYKAMHDLEKAIQGKKEAPIIQSLAIRSM-AKA 530
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ KP H L Y FTSPIRRY D+L H
Sbjct: 531 LYTTKPDPHFALAFAHYTHFTSPIRRYPDVLVH 563
>gi|407473557|ref|YP_006787957.1| ribonuclease R [Clostridium acidurici 9a]
gi|407050065|gb|AFS78110.1| ribonuclease R [Clostridium acidurici 9a]
Length = 711
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 162/340 (47%), Gaps = 59/340 (17%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R DL + + ID +A + DDA+S +L++G K+ +H+AD T Y+ S D
Sbjct: 239 EKEIARRLDLRKERTFTIDGPDAKDFDDAVSIEKLENGNYKLGVHIADVTYYVRERSALD 298
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+ RGTSV+L PM PEK++ SLR E + +T+SV++ D G + + +
Sbjct: 299 KEALTRGTSVYLVDRVIPMLPEKISNGVCSLRPNE--DRLTLSVIMEVDSRGKVVDQKIA 356
Query: 297 NSIIKPTYMLTYESATELLH---LNLEEE-----AELKILSEAAALRLQWRLQQGAIDTA 348
++I + L Y+ +++L + L+E+ +LK + + + + R +G+ID
Sbjct: 357 ETVISSSERLIYDDVSDILEKDDVELKEKYKHILTDLKHMEDLCEILINKRKSRGSIDFD 416
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E+RI + P I++ D+ + R++ E M++ E IA Y + + YR
Sbjct: 417 FPESRIILDEKGKP---IDITKYDRR-ISNRIIEEFMLISNETIAEYMYWTEIPFLYRVH 472
Query: 409 PQSNID--------VSAFA-HL---------------------PEGPVRSSAIVKIMR-- 436
++D +S F HL PE V S+ +++ ++
Sbjct: 473 EDPDMDRINEFNKFISNFGYHLKGTQEVHPKELQSLVNKIKGKPEEIVISTLMLRSLKKA 532
Query: 437 --AAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+A ID G GL Y FT+PIRRY DL H
Sbjct: 533 RYSADID-------GHFGLAAEYYSHFTAPIRRYPDLQIH 565
>gi|418977627|ref|ZP_13525441.1| ribonuclease R [Streptococcus mitis SK575]
gi|383349595|gb|EID27524.1| ribonuclease R [Streptococcus mitis SK575]
Length = 784
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|417794327|ref|ZP_12441585.1| ribonuclease R [Streptococcus oralis SK255]
gi|334270171|gb|EGL88578.1| ribonuclease R [Streptococcus oralis SK255]
Length = 784
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 49/339 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L + R ++GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHETLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H +
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVHRMI 573
>gi|189464648|ref|ZP_03013433.1| hypothetical protein BACINT_00991 [Bacteroides intestinalis DSM
17393]
gi|189436922|gb|EDV05907.1| ribonuclease R [Bacteroides intestinalis DSM 17393]
Length = 714
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 156/333 (46%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D ++ + ID +A + DDALS +++DG +V +H+AD T Y+ GS+ DK
Sbjct: 254 EEIAKREDFRNVTTFTIDPKDAKDFDDALSIRKIKDGLWEVGVHIADVTHYVTEGSIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V ++ G + + V +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEINEKGDVKDSRVVHTV 373
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
IK TYE A +++ + +EE L + + A ALR Q R GAI+ E + ++
Sbjct: 374 IKSDRRFTYEEAQQVIETKEGDFKEEI-LMLDTIAKALR-QKRFVSGAINFDRYEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y + D A +LV E M+L +A G N A PYR
Sbjct: 432 DAKGKP---ISVYFKVSQD-ANKLVEEFMLLANRTVAEKIGRVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAA 439
P+ + DVS + HL E + + ++ M+ A
Sbjct: 488 DPEKLDNLAQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKAR 547
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 548 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|148269352|ref|YP_001243812.1| ribonuclease R [Thermotoga petrophila RKU-1]
gi|281411951|ref|YP_003346030.1| ribonuclease R [Thermotoga naphthophila RKU-10]
gi|147734896|gb|ABQ46236.1| RNAse R [Thermotoga petrophila RKU-1]
gi|281373054|gb|ADA66616.1| ribonuclease R [Thermotoga naphthophila RKU-10]
Length = 710
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 40/328 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLSNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----GQP 409
+KV E+ + ++++ V + A +L+ E MI E +A L YR P
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDP 477
Query: 410 QSNIDVSAF-------AHLPEG----------------PVRSSAIVKIMRAAAIDFRKPV 446
++ + + A+ P+ P+RSS ++R+ V
Sbjct: 478 ETIFQLRNYLEAMGIRANFPQNIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAV 537
Query: 447 RHGVLGLP--GYVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 538 NIGHFGLASYAYTHFTSPIRRYPDLVVH 565
>gi|168483045|ref|ZP_02707997.1| ribonuclease R [Streptococcus pneumoniae CDC1873-00]
gi|417696164|ref|ZP_12345343.1| ribonuclease R [Streptococcus pneumoniae GA47368]
gi|418109939|ref|ZP_12746964.1| ribonuclease R [Streptococcus pneumoniae GA49447]
gi|418169075|ref|ZP_12805719.1| ribonuclease R [Streptococcus pneumoniae GA19077]
gi|418175790|ref|ZP_12812387.1| ribonuclease R [Streptococcus pneumoniae GA41437]
gi|418218718|ref|ZP_12845385.1| ribonuclease R [Streptococcus pneumoniae NP127]
gi|418221027|ref|ZP_12847681.1| ribonuclease R [Streptococcus pneumoniae GA47751]
gi|418238549|ref|ZP_12865104.1| ribonuclease R [Streptococcus pneumoniae NorthCarolina6A-23]
gi|419422786|ref|ZP_13963002.1| ribonuclease R [Streptococcus pneumoniae GA43264]
gi|419459818|ref|ZP_13999751.1| ribonuclease R [Streptococcus pneumoniae GA02270]
gi|419462135|ref|ZP_14002045.1| ribonuclease R [Streptococcus pneumoniae GA02714]
gi|419488971|ref|ZP_14028721.1| ribonuclease R [Streptococcus pneumoniae GA44386]
gi|172043441|gb|EDT51487.1| ribonuclease R [Streptococcus pneumoniae CDC1873-00]
gi|332201439|gb|EGJ15509.1| ribonuclease R [Streptococcus pneumoniae GA47368]
gi|353782851|gb|EHD63281.1| ribonuclease R [Streptococcus pneumoniae GA49447]
gi|353834917|gb|EHE15013.1| ribonuclease R [Streptococcus pneumoniae GA19077]
gi|353842358|gb|EHE22405.1| ribonuclease R [Streptococcus pneumoniae GA41437]
gi|353875373|gb|EHE55225.1| ribonuclease R [Streptococcus pneumoniae NP127]
gi|353875950|gb|EHE55800.1| ribonuclease R [Streptococcus pneumoniae GA47751]
gi|353894299|gb|EHE74041.1| ribonuclease R [Streptococcus pneumoniae NorthCarolina6A-23]
gi|379532844|gb|EHY98068.1| ribonuclease R [Streptococcus pneumoniae GA02270]
gi|379532981|gb|EHY98204.1| ribonuclease R [Streptococcus pneumoniae GA02714]
gi|379587864|gb|EHZ52711.1| ribonuclease R [Streptococcus pneumoniae GA44386]
gi|379588244|gb|EHZ53089.1| ribonuclease R [Streptococcus pneumoniae GA43264]
Length = 784
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ EA+A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANEAVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|392397436|ref|YP_006434037.1| RNAse R [Flexibacter litoralis DSM 6794]
gi|390528514|gb|AFM04244.1| RNAse R [Flexibacter litoralis DSM 6794]
Length = 797
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 154/352 (43%), Gaps = 55/352 (15%)
Query: 166 FDHKDISNFLQKAE---DNLLN-----RKDLTHLKVYAIDVDEADELDDALSAMRLQDGR 217
FD K ++KAE D+L + R+D + + ID +A + DDA+S L +G
Sbjct: 301 FDEK----LIKKAEEVPDDLTDKEFKKRRDFRPILTFTIDPHDAKDFDDAISLSYLPNGN 356
Query: 218 IKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNA 277
++ +H+AD T YI P +L +K+A KR TSV+L PM PE+++ SLR E A
Sbjct: 357 YEIGVHIADVTHYIRPNTLLEKEAQKRATSVYLVDRVVPMLPERISNNLCSLRPQEEKLA 416
Query: 278 VTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRL 336
+ L +GS+ ++I TYE A E + + A E+ +L++ A
Sbjct: 417 FSAVFELDKNGSVHNRWYGKTVIYSDRRFTYEEAQERIETKEGDYADEINLLNDIAKKLQ 476
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY- 395
R + GAI T E + ++ P +I +D A +LV E M+L +++A +
Sbjct: 477 AKRFKHGAISFETQEVKFQLDENGKPLGVIQKIRKD----AHKLVEEYMLLANKSVAEFV 532
Query: 396 -----GSFNNLALPYRGQPQS-------------------NIDVSAFA-----------H 420
G N + YR NI+ FA
Sbjct: 533 YRYKNGKEKNTMI-YRVHDDPDPDKLANLKAMAKSFGYDINIEPEFFAASLAKLVEDTEG 591
Query: 421 LPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
PE S ++ M + A+ K H L Y FTSPIRRY D++AH
Sbjct: 592 KPEYETLQSLAIRSM-SKAVYTTKATGHFGLAFDHYSHFTSPIRRYPDMMAH 642
>gi|422847110|ref|ZP_16893793.1| ribonuclease R [Streptococcus sanguinis SK72]
gi|325687303|gb|EGD29325.1| ribonuclease R [Streptococcus sanguinis SK72]
Length = 782
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLAGRLDLREEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVQLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM + + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMESVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
+G GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNYGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|399022619|ref|ZP_10724691.1| ribonuclease R [Chryseobacterium sp. CF314]
gi|398084455|gb|EJL75140.1| ribonuclease R [Chryseobacterium sp. CF314]
Length = 716
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 148/332 (44%), Gaps = 41/332 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ PG+L
Sbjct: 254 TDEEVAKRWDMREITTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVIPGTLL 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM PE L+ + SLR E + L+ + + +
Sbjct: 314 DDEAYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFELNDNAEVQKQWFGR 373
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE A E + + A E+ +L A + R+++GAI E R +
Sbjct: 374 TVIHSDRRFTYEEAQERIETKEGDYAEEILVLDRLAKIMRAERIRKGAITFDRSEVRFSL 433
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYRGQPQ 410
E+ EP + +Y + D + L+ E M+L ++ + G +N YR
Sbjct: 434 --DENNEP-VGVYFKISKD-SNHLIEEFMLLANRKVSEFVSLSRRGEISNNTFIYRVHDD 489
Query: 411 SNID--------VSAFA-------------------HLPEGPVRSSAIVKI-MR--AAAI 440
+ VS F H +G + I + MR + A+
Sbjct: 490 PDPAKLEALRDFVSTFGYKMDLANTKKVAESLNRLLHDVKGKGEENMIETLAMRSMSKAV 549
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ H LG Y FTSPIRRY DL+AH
Sbjct: 550 YSTDPIGHYGLGFEYYSHFTSPIRRYPDLIAH 581
>gi|449128466|ref|ZP_21764712.1| hypothetical protein HMPREF9733_02115 [Treponema denticola SP33]
gi|448940874|gb|EMB21778.1| hypothetical protein HMPREF9733_02115 [Treponema denticola SP33]
Length = 623
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 140/291 (48%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DL+HL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLSHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVS-C 356
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPI 365
+++E A E + A LK L E A + R GA+ E +IKV D + +
Sbjct: 357 ISFEKADEE-----KTSANLKPLFEIAERNRKKREAAGAVSIDMPEVQIKVETENDNQKV 411
Query: 366 -INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|418091717|ref|ZP_12728859.1| ribonuclease R [Streptococcus pneumoniae GA44452]
gi|418107367|ref|ZP_12744405.1| ribonuclease R [Streptococcus pneumoniae GA41410]
gi|421272627|ref|ZP_15723471.1| ribonuclease R [Streptococcus pneumoniae SPAR55]
gi|353763817|gb|EHD44367.1| ribonuclease R [Streptococcus pneumoniae GA44452]
gi|353779550|gb|EHD60014.1| ribonuclease R [Streptococcus pneumoniae GA41410]
gi|395875736|gb|EJG86814.1| ribonuclease R [Streptococcus pneumoniae SPAR55]
Length = 765
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ EA+A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANEAVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|365924372|ref|ZP_09447135.1| ribonuclease R [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265301|ref|ZP_14767865.1| ribonuclease R 1 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394428310|gb|EJF00885.1| ribonuclease R 1 [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 781
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 157/329 (47%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA++A ++ +G + +H+AD + Y+ G+ + +A+ R
Sbjct: 261 RVDLTDQDLVTIDSIESKDLDDAVTAWKMDNGNYHLGVHIADVSHYVRVGTALNDEALNR 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P KL+ SL A++ + + S+G++ + + S+IK T
Sbjct: 321 GTSVYLTDRVIPMLPHKLSNGICSLNPKVERLAMSCEMEIDSEGNVLNHKIFPSVIKTTE 380
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY + ++L + E+ + ++E + L+ R ++GAI+ E +I V
Sbjct: 381 RMTYVAINKILESHDEKTMARYEELVPMFETMNELHKILLKMRKRRGAIEFEDTEAKIIV 440
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQPQSN 412
P I++ + ++ + R+V M+ E IA + FN+L +P+ P++
Sbjct: 441 DEKGHP---IDIQLRERG-ISERIVESFMLAANETIAEH--FNHLRVPFIYRIHETPKAE 494
Query: 413 IDVSAFAHL-----------------------------PEGPVRSSAIVKIMRAAAIDFR 443
+S F L PE + S+ +++ M+ A
Sbjct: 495 KMLSFFEALSSLGIETSGSSNDVKPKMLQTILKKVAGKPEEAMVSTMLLRSMQQAKYS-D 553
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H LG Y FTSPIRRY DLL H
Sbjct: 554 QPLGHFGLGADDYTHFTSPIRRYPDLLVH 582
>gi|417915156|ref|ZP_12558777.1| ribonuclease R [Streptococcus mitis bv. 2 str. SK95]
gi|342835270|gb|EGU69521.1| ribonuclease R [Streptococcus mitis bv. 2 str. SK95]
Length = 784
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQ-----QGAIDTA 348
++IK ++ +TY + +L + E+ E K + + L +L RL+ +GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNGILAGDEEKRREYKKIVPSIELMVKLHERLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAAKYYTHFTSPIRRYPDLLVH 570
>gi|260891253|ref|ZP_05902516.1| ribonuclease R [Leptotrichia hofstadii F0254]
gi|260859280|gb|EEX73780.1| ribonuclease R [Leptotrichia hofstadii F0254]
Length = 716
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 155/342 (45%), Gaps = 53/342 (15%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L NRKDL +L + ID +A +LDDA+ + +DG K+++ +AD + Y+ + D
Sbjct: 237 EELKNRKDLRNLDIITIDGSDAKDLDDAVYVEKTEDG-YKLFVSIADVSYYVRENTELDT 295
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A+KRG S++L PM P KL+ SL E TV + L G + S+
Sbjct: 296 EALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKKGKVVRNDFYKSV 355
Query: 300 IKPTYMLTYESATELLHLNLEEEAE-------------LKILSEAAALRLQWRLQQGAID 346
IK Y +TYE+ +L N E E LK + E + + + ++G+ID
Sbjct: 356 IKSKYRMTYENVNTILEKNEESEEYKGLYDKYRKIDEMLKNMLELSKIIRNNKKRRGSID 415
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ + +D + + ++ + + + A R++ + M++ E +A + + YR
Sbjct: 416 FELPEIKVVL---DDNKAVKDIVLRSRGE-AERIIEDFMVIANETVAEKFFWEEIPAIYR 471
Query: 407 --------------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKI 434
G+ Q+ I+ + LPEG + I++
Sbjct: 472 VHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERT--TGLPEGYLIHKLILRA 529
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
M+ A K + H L Y+ FTSPIRRY DL+ H +G
Sbjct: 530 MQRARY-ANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLG 570
>gi|255534171|ref|YP_003094542.1| Ribonuclease R [Flavobacteriaceae bacterium 3519-10]
gi|255340367|gb|ACU06480.1| Ribonuclease R [Flavobacteriaceae bacterium 3519-10]
Length = 718
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 150/342 (43%), Gaps = 47/342 (13%)
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
DI + +E + R+D+ + + ID +A + DDALS +L +G ++ +H+AD +
Sbjct: 249 DIDRTIHDSE--VAKRRDMRGICTFTIDPKDAKDFDDALSIQKLNNGNWEIGVHIADVSH 306
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD-- 287
Y++PG+L D +A R TSV+L PM PE L+ + SLR E + T S V D
Sbjct: 307 YVQPGTLLDDEAYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNE--DKYTFSAVFEMDEN 364
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAID 346
+ ++I YE A E + + A E+ L A + + R++ GAI
Sbjct: 365 ADVVNEWFGRTVIHSDRRFAYEEAQERIETGTGDLAEEILTLDRLAKILRKERIRNGAIT 424
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP-- 404
E R + E+ EP I +Y + D + L+ E M+L ++ + S N P
Sbjct: 425 FDRSEVRFNL--DENSEP-IGVYFKISKD-SNHLIEEFMLLANRKVSEFISLNRKGEPTA 480
Query: 405 ----YR-----------------GQPQSNIDVSAFAHLPEGPVRSSAIVK---------- 433
YR G +D++ + E R VK
Sbjct: 481 NTFIYRIHDDPDPTKLEALRDFVGTFGYQMDLANTKKVAESLNRLLQDVKGKGEENMIET 540
Query: 434 -IMR--AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
MR + A+ P+ H LG Y FTSPIRRY DL+AH
Sbjct: 541 LAMRSMSKAVYSTNPIGHYGLGFDFYSHFTSPIRRYPDLIAH 582
>gi|347534233|ref|YP_004840903.1| ribonuclease R 1 [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504289|gb|AEN98971.1| Ribonuclease R 1 [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 767
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+T + ID +E+ +LDDA++A +L +G + +H+AD + Y++PG++ D++A KR
Sbjct: 257 REDITDQDLVTIDAEESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVKPGTMLDREAYKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS +L PM P +L+ SL +GE+ ++ + + G + + V S+++
Sbjct: 317 GTSCYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCDMEITPQGKVVKSRVHPSVMRSKA 376
Query: 305 MLTYESATELLHLNLEEEAELK---------ILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + E++ N + + K ++E + R ++GAID E +I
Sbjct: 377 RMTYNAVNEIIE-NKDADTRKKYADLVPMFETMNELHKILYNARRRRGAIDFNDNEAKI- 434
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ N E I L A+ RL+ M+ E +A ++N L +P+ + D
Sbjct: 435 IVNKEGHPIDIQLRTRGTAE---RLIESFMLAANETVAE--TYNKLKVPFIYRIHEVPDA 489
Query: 415 ---------VSAFA--------HL-PEG-----------PVRSSAIVKIMRA--AAIDFR 443
++AF HL P+ PV + V ++R+ A
Sbjct: 490 TRVKEFFEFLTAFGINIKADTDHLEPKTLQNILSKVAGKPVEAMVSVMLLRSMQQAKYSD 549
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY D+ H
Sbjct: 550 KCVGHFGLGAKYYTHFTSPIRRYPDMFIH 578
>gi|160891706|ref|ZP_02072709.1| hypothetical protein BACUNI_04161 [Bacteroides uniformis ATCC 8492]
gi|270295199|ref|ZP_06201400.1| ribonuclease R [Bacteroides sp. D20]
gi|317478234|ref|ZP_07937400.1| ribonuclease R [Bacteroides sp. 4_1_36]
gi|156859113|gb|EDO52544.1| ribonuclease R [Bacteroides uniformis ATCC 8492]
gi|270274446|gb|EFA20307.1| ribonuclease R [Bacteroides sp. D20]
gi|316905627|gb|EFV27415.1| ribonuclease R [Bacteroides sp. 4_1_36]
Length = 714
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 149/331 (45%), Gaps = 43/331 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +L+ G +V +H+AD T Y++ G + DK
Sbjct: 254 EEIARREDFRGVTTFTIDPKDAKDFDDALSIRKLKGGLWEVGVHIADVTHYVKEGGIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + V +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTEKGEVKNSRVVHTV 373
Query: 300 IKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TYE A E++ + + E+ L + A + + R + GAI+ E + ++
Sbjct: 374 IKSDRRFTYEEAQEIIETGKGDFQEEVLQLDKLAKILRENRFKAGAINFDRYEVKFEIDE 433
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQP 409
P +++Y ++ D A +L+ E M+L +A LPYR P
Sbjct: 434 KGKP---VSVYFKESKD-ANKLIEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHDLPDP 489
Query: 410 Q--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAID 441
+ + D+S + HL E + + ++ M+ A
Sbjct: 490 EKLDNLAQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQKARYS 549
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY D++ H
Sbjct: 550 VHN-VGHYGLAFDYYTHFTSPIRRYPDMMVH 579
>gi|423068592|ref|ZP_17057380.1| ribonuclease R [Streptococcus intermedius F0395]
gi|355365892|gb|EHG13611.1| ribonuclease R [Streptococcus intermedius F0395]
Length = 779
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 49/339 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R DL + + ID +A +LDDA+ +L +G ++ +H+AD + Y++ GS
Sbjct: 242 SKKDFEGRLDLRNEITFTIDGADAKDLDDAVHIKKLSNGHFELGVHIADVSYYVQEGSEL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 302 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQKGRVVKHTI 359
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKI-------LSEAAALRLQWRLQQGAIDTA 348
+I+K T+ +TY +++ + ++ A K ++E A+ R ++GA++
Sbjct: 360 TQTIVKTTFRMTYSDVNDMIAGDEKKRAAFKAIVPSIEQMAELHAILETMRFKRGALNFD 419
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P II Q A R++ M++ E +A + F L LP+
Sbjct: 420 TKEAKILVNKTGRPVDIILR----QRGLAERMIESFMLVANETVAEH--FAKLKLPFIYR 473
Query: 406 -RGQP-----QSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S F G S SA+ IM+A + V
Sbjct: 474 IHEEPKAEKVQKFIDFASTFGVRVYGTANSISQSALQDIMKAVHGQPYEEVLSMMLLRSM 533
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
+G GL Y FTSPIRRY DLL H V
Sbjct: 534 QQARYSEHNYGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 572
>gi|312870296|ref|ZP_07730424.1| ribonuclease R [Lactobacillus oris PB013-T2-3]
gi|311094180|gb|EFQ52496.1| ribonuclease R [Lactobacillus oris PB013-T2-3]
Length = 786
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 153/329 (46%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+T+ + ID E+ +LDDA+ A ++ +G + +H+AD + Y++PG+ DK+A KR
Sbjct: 257 RKDITNQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL GE A++ + + G + ++ + S++K
Sbjct: 317 GTSVYLTDRVVPMLPKRLSNGICSLNPGEERLAMSCEMEIDEQGRVVKHRIFPSVMKSHA 376
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ +L + ++ + + + E + L+ R ++GAID E +I V
Sbjct: 377 RMTYKAVNRILEAHDQKTIDQYKDLVPMFETMGELHKILLKSRKRRGAIDFEAPEAKIIV 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
+ P I++ + D+ A R++ M+ E +A + ++ YR + D V
Sbjct: 437 DDKGHP---IDIQLRDRG-LAERMIESFMLAANETVAEHYFNEHVPFLYRIHETPDKDRV 492
Query: 416 SAF----------AHLPEGPVRSSAIVKIMRAAAIDFRKP-------------------- 445
AF H V+ + K+++ A KP
Sbjct: 493 KAFVDFLNVFGIDVHGDINNVKPKMLQKVLKDVA---GKPEEQMVQVMMLRSMQQAKYSD 549
Query: 446 --VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 550 EELGHFGLGAKYYTHFTSPIRRYPDDTVH 578
>gi|296126052|ref|YP_003633304.1| exoribonuclease II [Brachyspira murdochii DSM 12563]
gi|296017868|gb|ADG71105.1| Exoribonuclease II [Brachyspira murdochii DSM 12563]
Length = 581
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 144/317 (45%), Gaps = 31/317 (9%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +LK ID + + +LDDALS + D KVYIH++D + +IE S D +A R
Sbjct: 132 RIDLRNLKTITIDSESSKDLDDALSIEKEDDDHYKVYIHISDVSHFIELNSPLDIEARSR 191
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G S +L Y MFPE L+ +SL + A+T+ V +++ G + V S+I
Sbjct: 192 GNSTYLIDEVYNMFPEILSNNVISLNENADRFAMTLLVHINNKGEVLSSEVFKSVINSDK 251
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAAL--RLQWRLQQGAIDTATLETRIKVANPEDP 362
L+Y+ A +++ + E L +L + A + L + ++ +++ +D
Sbjct: 252 KLSYDYAEDIIDKKCQAEDWLIVLIDNALIIKNLLYNRRKEGRGVEFDNQNVQIVLDDDG 311
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS-----------------FNNLALPY 405
P I Y E++ +M +V E+M+L IA S FNN +
Sbjct: 312 IP-IEFYAEEKK-QSMSIVEELMLLANSEIAKKLSKYDGVIYRYHGVPDEYRFNNFKILA 369
Query: 406 RGQ-------PQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV---RHGVLGLPG 455
+ P + D+ F +G + ++ ++ + + H LGL
Sbjct: 370 HNKGYDLKELPDKSYDIKEFVDRVKGKQEENLLIPVLLRSMTPSSYSIVNKSHFGLGLDY 429
Query: 456 YVQFTSPIRRYMDLLAH 472
Y FTSPIRRY DLL H
Sbjct: 430 YTYFTSPIRRYADLLIH 446
>gi|423098589|ref|ZP_17086334.1| ribonuclease R [Listeria innocua ATCC 33091]
gi|370795047|gb|EHN62784.1| ribonuclease R [Listeria innocua ATCC 33091]
Length = 793
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS DK+
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L EE E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEELREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|294501756|ref|YP_003565456.1| ribonuclease R [Bacillus megaterium QM B1551]
gi|295707106|ref|YP_003600181.1| ribonuclease R [Bacillus megaterium DSM 319]
gi|294351693|gb|ADE72022.1| ribonuclease R [Bacillus megaterium QM B1551]
gi|294804765|gb|ADF41831.1| ribonuclease R [Bacillus megaterium DSM 319]
Length = 780
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 155/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL + ID +A +LDDA++ L++G K+ +H+AD + Y++ GS D
Sbjct: 244 EKDIGNRRDLRDQVIVTIDGADAKDLDDAVTVTELENGNYKLGVHIADVSHYVKEGSPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
+A +RGTSV+L PM P +L+ SL N T+S + D G + ++ +
Sbjct: 304 VEAAERGTSVYLVDRVIPMIPHRLSNGICSLNPK--VNRFTLSCEMEIDPQGEVVKHEIF 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
S+IK T +TY ++L EE E + + + AA+ + R+ +GAID
Sbjct: 362 ESVIKTTERMTYSDVNKILVDKDEEVLERYEPIVPMFERMEKLAAILRKKRMDRGAIDFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E ++ V + P +I + A +L+ E M+ E +A + + N+ YR
Sbjct: 422 FKEAKVLVDDDGHPHDVILR----ERSVAEKLIEEFMLAANETVAEHFHWMNVPFIYRIH 477
Query: 409 PQSNID--------VSAFAH-----------------------LPEGPVRSSAIVKIMRA 437
+ + ++ F + PE V S+ +++ M+
Sbjct: 478 EDPDAEKLTRFLEFITNFGYTVKGTGNDIHPRALQDILEEVKGTPEEMVISTVMLRSMKQ 537
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + + + H L Y FTSPIRRY DL+ H
Sbjct: 538 AKYE-AESLGHFGLSAEFYTHFTSPIRRYPDLIVH 571
>gi|299821975|ref|ZP_07053863.1| ribonuclease R [Listeria grayi DSM 20601]
gi|299817640|gb|EFI84876.1| ribonuclease R [Listeria grayi DSM 20601]
Length = 783
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 152/343 (44%), Gaps = 58/343 (16%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ AE + NR+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ G
Sbjct: 241 LENAE--IGNRRDLRDQIIITIDGADAKDLDDAVTVTKLENGNWKLGVHIADVSHYVTEG 298
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S DK+A RGTSV+L PM P KL+ SL ++ + + G++ +
Sbjct: 299 SEIDKEAADRGTSVYLVDRVIPMLPHKLSNGICSLNPHVDRFTLSCEMEIDETGTVVNHE 358
Query: 295 VDNSIIKPTYMLTYESATELLHLN--------------LEEEAELKILSEAAALRLQWRL 340
+ S+IK T +TY E+L + LEE +L A LR Q R
Sbjct: 359 IFESVIKTTERMTYTDVNEILTTDNLELRDRYAVIVPMLEEMGKL-----AETLR-QKRE 412
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
++GAID E R+ V P+ + V + A L+ E M+ E +A + + +
Sbjct: 413 KRGAIDFDFKEARVLVDEKGQPQEV----VMRERSVAEHLIEEFMLAANETVAEHFHWMD 468
Query: 401 LALPYRGQPQSNID--------VSAFAHL-----------------------PEGPVRSS 429
+ YR D ++ F + PE V S+
Sbjct: 469 VPFIYRIHENPKEDKLARFFEFITNFGLIVKGTANDIHPAALQQVLDEVRGKPEEMVVST 528
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+++ M+ A D V H L Y FTSPIRRY DL+ H
Sbjct: 529 IMLRSMQQAKYD-TASVGHFGLSTEFYTHFTSPIRRYPDLIVH 570
>gi|51891477|ref|YP_074168.1| ribonulease R [Symbiobacterium thermophilum IAM 14863]
gi|51855166|dbj|BAD39324.1| ribonulease R [Symbiobacterium thermophilum IAM 14863]
Length = 834
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 52/335 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
N R+DL + ID ++A +LDDA+S +RL R ++ +H+AD Y+ GS D++
Sbjct: 241 NEPGRRDLRDWTIVTIDGEDAKDLDDAVSVVRLAPDRWQLGVHIADVAAYVPEGSALDRE 300
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNS 298
A +RGTSV+L PM P +L+ SL G + +T+S V+ D G + Y++ S
Sbjct: 301 AYRRGTSVYLADRVVPMLPPRLSNGICSLNPG--VDRLTLSCVMEIDGRGEVRSYAIFPS 358
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKIL-------SEAAALRLQWRLQQGAIDTATLE 351
+I+ LTY +L+ A L+ L +E A+ + R+++GA+D E
Sbjct: 359 VIRTAARLTYTRVNAILNDEPGAAAGLEHLVPMCREMAELMAVLRERRMRRGALDFDLPE 418
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQ 410
++K+ P ++ + D+ A R++ E M++ E +A + S L + YR +P
Sbjct: 419 AKVKLNEQGWPTDVLRV---DRGI-AERIIEEFMLVANETVAEHCSTRELPVLYRVHEPP 474
Query: 411 SNIDVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAA 439
++ V+ + PE + S +++ M+ A
Sbjct: 475 ASDKVAGLSEFLQLFGYNLRMPRDGSVAPKDLQKVTLWAKDRPEENLIGSVLLRTMKQAR 534
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
R G GL Y FTSPIRRY DL+ H
Sbjct: 535 YSEE---RLGHFGLAAEYYCHFTSPIRRYPDLVVH 566
>gi|169826077|ref|YP_001696235.1| ribonuclease R [Lysinibacillus sphaericus C3-41]
gi|168990565|gb|ACA38105.1| Ribonuclease R [Lysinibacillus sphaericus C3-41]
Length = 829
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 158/338 (46%), Gaps = 52/338 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL H + ID +A +LDDA++ + DG K+ +H+AD + Y+ GS+
Sbjct: 249 TEADLVGRRDLRHETIVTIDGADAKDLDDAVTVTKNVDGTYKLGVHIADVSYYVTQGSVI 308
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R TSV+L PM P +L+ SL ++ +++ ++G++ + +
Sbjct: 309 DLEAYDRATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIIDANGNVIAHEIFQ 368
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE------------LKILSEAAALRLQWRLQQGAI 345
S+IK T +TY+ ++ LEE+ E K ++E + + + R +GAI
Sbjct: 369 SVIKTTERMTYKDVYKI----LEEQDEALMKRYEPLVPMFKNMAELSGILRRKRESRGAI 424
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E+++ + N E I L + A +L+ + M+ E +A + + N+ Y
Sbjct: 425 DFDFKESKV-IVNEEGWPVDIELR---ERTVAEKLIEDFMLAANETVAEHFHWMNVPFLY 480
Query: 406 R------------------------------GQPQSNIDV-SAFAHLPEGPVRSSAIVKI 434
R P++ DV A +PE PV S+ +++
Sbjct: 481 RIHEDPKPEKLQRFFEFVTNFGILIKGTGNTVHPKALQDVLKAIEGMPEEPVISTMLLRS 540
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A + + + H L Y FTSPIRRY DL+ H
Sbjct: 541 MQQAKY-YPESLGHFGLSTDFYTHFTSPIRRYPDLIVH 577
>gi|229916580|ref|YP_002885226.1| ribonuclease R [Exiguobacterium sp. AT1b]
gi|229468009|gb|ACQ69781.1| ribonuclease R [Exiguobacterium sp. AT1b]
Length = 801
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 157/341 (46%), Gaps = 58/341 (17%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + + R DL ++ ID ++A +LDDA+ +L +G ++ +H+AD + Y++ GS D
Sbjct: 240 EKDFIGRVDLRDETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVKEGSPLD 299
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH---SDGSIAEYSV 295
+A +RGTSV+L PM P +L+ SL N +T+S V+ +G + + +
Sbjct: 300 VEAFERGTSVYLVDRVIPMLPHRLSNGICSLNPH--VNRLTLSCVMEISPQNGKVVRHDL 357
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY + E++ + EE E +++E A + + R +GAI+
Sbjct: 358 FPSVIKTTERMTYTNVREIIERDDEETLKKYEPFIGEFDLMAELAEVLRKRRNSRGAINF 417
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--Y 405
E ++ V P I V A +L+ E M+ E +A + F+ + +P Y
Sbjct: 418 DFAEAKVVVNEEGKPADI----VLRPRSVAEKLIEEFMLAANETVAEH--FHKMDVPFIY 471
Query: 406 RGQPQSNID--------VSAFA-HL-----------------------PEGPVRSSAIVK 433
R D V+ F H+ PE PV S+ +++
Sbjct: 472 RVHDNPKPDKLDFFFDFVANFGVHIERIKGQTVEPKTLQKILKAIDGEPEEPVISTIMLR 531
Query: 434 IMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
M+ A D V G GL Y FTSPIRRY DL+ H
Sbjct: 532 SMQQAKYD---DVSLGHFGLATDFYTHFTSPIRRYPDLIVH 569
>gi|417923309|ref|ZP_12566778.1| ribonuclease R [Streptococcus mitis SK569]
gi|342837113|gb|EGU71312.1| ribonuclease R [Streptococcus mitis SK569]
Length = 784
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSTL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIELMAKLHEILESMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + S NL YR
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEHFSKLNLPFIYRIH 476
Query: 407 -----GQPQSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G + A+ IMR + V
Sbjct: 477 EEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSMQQ 536
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 537 ARYSEQNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|417848214|ref|ZP_12494163.1| ribonuclease R [Streptococcus mitis SK1073]
gi|339454961|gb|EGP67574.1| ribonuclease R [Streptococcus mitis SK1073]
Length = 784
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 55/339 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDKEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|138896635|ref|YP_001127088.1| ribonuclease R [Geobacillus thermodenitrificans NG80-2]
gi|196249336|ref|ZP_03148034.1| ribonuclease R [Geobacillus sp. G11MC16]
gi|134268148|gb|ABO68343.1| Ribonuclease R [Geobacillus thermodenitrificans NG80-2]
gi|196211093|gb|EDY05854.1| ribonuclease R [Geobacillus sp. G11MC16]
Length = 755
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 TEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + + G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVSHDIFQ 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ T +TY ++L E E ++++E A + R+++GAID
Sbjct: 360 SVIRTTERMTYSDVNKILVDKDEALREKYAPLVPMFELMAELADILRTKRMKRGAIDFDF 419
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M++ E +A + + N+ YR
Sbjct: 420 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLVANETVAEHFHWLNVPFMYRVHE 475
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 476 DPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQA 535
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 536 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 568
>gi|284046031|ref|YP_003396371.1| exoribonuclease II [Conexibacter woesei DSM 14684]
gi|283950252|gb|ADB52996.1| Exoribonuclease II [Conexibacter woesei DSM 14684]
Length = 601
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 147/336 (43%), Gaps = 50/336 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R+DL L + ID A + DDA+SA + R ++++H+AD + Y+ PG L D++
Sbjct: 131 DVPGRRDLRDLTTFTIDPATAKDFDDAISAEQTGPDRWRIWVHIADVSAYVRPGDLIDRE 190
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV++P PM PE L+ SLR GE AVT + LH S+A S S I
Sbjct: 191 AYRRGTSVYVPAKVEPMLPEGLSNVACSLRPGEDRLAVTAELELHGP-SVARASFYRSTI 249
Query: 301 KPTYMLTYESATELL---HLNLEEEAE-LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ L Y+ + LE A+ L AAA R QGA+ ++E
Sbjct: 250 RSDERLDYDRVDRIFAGAEPALEPWAQPLAAARGAAAALAARRDAQGALAIESVEPEFAF 309
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL--------------- 401
D E + + RL+ +MIL E +A S +
Sbjct: 310 ----DREGHVTAAAGVVQTESHRLIEHLMILANEQVARLLSERKVPTLYRVHERPDGSAA 365
Query: 402 ---------------ALPYRGQPQSNIDVSAFA-HLPEGPVR---------SSAIVKIMR 436
LP + PQ + A A HL VR +S +++ ++
Sbjct: 366 ERLIAQLASLGVPTPPLPEQPTPQQGAEAIAVASHLVAAYVRRSRRGGIGLNSLVLRALK 425
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D R + H LGL Y FTSPIRRY DL+ H
Sbjct: 426 QARYDPRN-LGHTGLGLTHYCHFTSPIRRYPDLVCH 460
>gi|160944022|ref|ZP_02091252.1| hypothetical protein FAEPRAM212_01523 [Faecalibacterium prausnitzii
M21/2]
gi|158444698|gb|EDP21702.1| putative ribonuclease R [Faecalibacterium prausnitzii M21/2]
Length = 707
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 140/328 (42%), Gaps = 43/328 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL L ++ ID E ++DDA+S + DG ++ +H+AD + Y++PGS D +A
Sbjct: 241 GRMDLRALPIFTIDSAETKDIDDAISLTKTPDGGFELGVHIADVSNYVKPGSELDNEAFN 300
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ PM P++L+ SL +G + A + + L DG++ +Y S+I+
Sbjct: 301 RATSVYYADQVVPMLPKQLSNGICSLNEGVLRLAFSCLMRLDKDGNLTDYRFVKSVIRSR 360
Query: 304 YMLTYESATELLHLNLEEE---------AELKILSEAAALRLQWRLQQGAIDTATLETRI 354
Y LL N ++E A+L + E R + R ++G +D + E +
Sbjct: 361 VKGVYSEINALLAGNADDELTGKYHEVLAQLPAMKELYGHRARLRKERGCMDIESGE--V 418
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
K+ ED I AM + E M+L + A + + YR + N +
Sbjct: 419 KLILDEDGHCIDVKKRTSGESEAM--IEEFMLLANQCAAHFARVKQIPFVYRVHEEPNAE 476
Query: 415 V--------------SAFAHLPEGPVRSSAIVKIMRAAAID----------------FRK 444
FA P SAI++ +R A + K
Sbjct: 477 KLERLHGLLQACGVNDHFAKDVPTPKELSAILEGVRGTAYEQIINVGMLRCMSKAVYEEK 536
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P H L L Y FTSPIRRY DL H
Sbjct: 537 PKGHYGLVLQDYAHFTSPIRRYPDLAIH 564
>gi|157363607|ref|YP_001470374.1| ribonuclease R [Thermotoga lettingae TMO]
gi|157314211|gb|ABV33310.1| ribonuclease R [Thermotoga lettingae TMO]
Length = 716
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 149/336 (44%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED + +RKD + V+ ID + A + DDA+S ++ + + +H+AD + Y++ GS D
Sbjct: 239 EDEMKDRKDFRNTLVFTIDGENAKDFDDAVSIKKISKDKFLLSVHIADVSHYVQEGSAID 298
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGTSV+L PM P KL+ SL +G+ TV +V+ +G+ +Y + S
Sbjct: 299 REAFHRGTSVYLLDKVVPMLPFKLSNNLCSLVEGKDRLTFTVQMVIDREGNTVDYEISPS 358
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKI----------LSEAAALRLQWRLQQGAI-DT 347
+I+ LTY + + + +E A+ K+ + E + + ++R ++GAI D
Sbjct: 359 VIRSKKRLTYTLVNQ--YFSGDESAKKKLGKRICSSLNRMLELSEILREYRRRRGAILDI 416
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E I + I+ + PA L+ E MI E +A F+N LP+
Sbjct: 417 EGGEVDIIIDEKGRTVDIL----PRRRGPAEVLIEEFMIKANETVAEV--FHNAGLPFVY 470
Query: 408 QPQSNIDVSAFAHLPE-----------------------------GPVRSSAIVKIMRAA 438
+ D L E P+RSS ++R+
Sbjct: 471 RVHEEPDPEFLIQLKEYVEALGLKVKFPKQIHPGVLQQLLEAVKDHPLRSSVEKLLVRSM 530
Query: 439 AIDFRKPVRHGVLGLP--GYVQFTSPIRRYMDLLAH 472
+ G GL Y FTSPIRRY DL+ H
Sbjct: 531 KRAIYSALNVGHFGLASFAYTHFTSPIRRYPDLVVH 566
>gi|119357755|ref|YP_912399.1| ribonuclease R [Chlorobium phaeobacteroides DSM 266]
gi|119355104|gb|ABL65975.1| RNAse R [Chlorobium phaeobacteroides DSM 266]
Length = 791
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 46/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L+ R D+ V+ ID +A + DDALS L R ++ +H+AD + Y+ SL
Sbjct: 315 TDEDLVGRLDIRDKLVFTIDPVDAKDFDDALSLETLTGNRYRIGVHIADVSHYVPEDSLL 374
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+AMKR TSV+L PM P +L+ + SL G A +V + + G + +
Sbjct: 375 DKEAMKRATSVYLVDRVIPMLPSRLSEQICSLNPGVDRMAFSVFITMTDAGEVEKQEFQK 434
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+ I TYE ++L + AELK+L + + R + G +D T E R ++
Sbjct: 435 TAIHSKRRFTYEDVQQILDSGEGDFVAELKLLDTLSTTLREKRFKHGGLDFETEEVRFRL 494
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALP--YR--- 406
+ +P ++ + + + RL+ E M+L +A T+G P YR
Sbjct: 495 GSKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAEYLTKTFGEGKKTPQPCIYRVHD 550
Query: 407 -GQPQSNIDVSAFAHL----------PEGPVRSSA----IVKIMRAAAIDF--------- 442
Q + + +S F +GP+ ++ +++ +R ++F
Sbjct: 551 APQLEKVVILSNFVKRLGYDLKLNRGKDGPIVTAKALRQLLQQVRGTNLEFLVNELVLRS 610
Query: 443 -RKPVR------HGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY DL+ H
Sbjct: 611 MSKAVYTGDNAGHYGLGFEHYTHFTSPIRRYPDLIIH 647
>gi|414158338|ref|ZP_11414632.1| ribonuclease R [Streptococcus sp. F0441]
gi|410870883|gb|EKS18840.1| ribonuclease R [Streptococcus sp. F0441]
Length = 784
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 157/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVHYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY + ++L + E+ E K + + L + R ++GA++
Sbjct: 361 TQTVIKTSFRMTYSAVNDILAGDEEKRQEFKKIVPSIELMAKLHETLESMREKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TSEAKILVDKKGKPVDI----VLRQRGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|406593176|ref|YP_006740355.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci NJ1]
gi|405789048|gb|AFS27790.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci NJ1]
Length = 681
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 154/348 (44%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +NL +E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEP---VNL-IETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|406668281|ref|ZP_11076019.1| Ribonuclease R [Bacillus isronensis B3W22]
gi|405383884|gb|EKB43345.1| Ribonuclease R [Bacillus isronensis B3W22]
Length = 802
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 48/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL + + ID +A +LDDA++ ++ +G K+ +H+AD + Y+ GS+
Sbjct: 242 TEQDLVGRRDLRNEVIVTIDGADAKDLDDAVTVVKNDNGTYKLGVHIADVSYYVTQGSVL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +R TSV+L PM P +L+ SL ++ + + G + ++ +
Sbjct: 302 DQEAYERATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMTIDQAGHVVKHEIFQ 361
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L N +E EL K +++ A + R+ +GAID
Sbjct: 362 SVIKTTERMTYSDVYNILE-NPDENPELMERYENLVPMFKDMADLAQILRNKRMARGAID 420
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E+++ V P I V + A RL+ E M+ E IA + + L YR
Sbjct: 421 FDFKESKVLVNEDGWPTDI----VLRERTVAERLIEEFMLAANETIAEHFHWMELPFIYR 476
Query: 407 ----GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIM 435
+P+ +N + + LPE PV S+ +++ M
Sbjct: 477 IHEDPKPEKLQRFFEFVTNFGIMIKGTGNSVHPKALQEVIRSIEGLPEEPVISTMLLRSM 536
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A + + + H L Y FTSPIRRY DL+ H
Sbjct: 537 QQAKY-YAESLGHFGLSTEFYTHFTSPIRRYPDLIVH 572
>gi|323488676|ref|ZP_08093918.1| ribonuclease R [Planococcus donghaensis MPA1U2]
gi|323397694|gb|EGA90498.1| ribonuclease R [Planococcus donghaensis MPA1U2]
Length = 774
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 160/333 (48%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L +R+DL + ++ ID +A +LDDA+ ++ +DG K+ +H+AD + Y+ GS D++
Sbjct: 246 DLNDRRDLRNEQIVTIDGADAKDLDDAVQVVKYEDGTYKLGVHIADVSHYVTEGSPIDRE 305
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TS++L PM P +L+ SL ++ ++ + G + + + S+I
Sbjct: 306 AYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHEIFQSVI 365
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+ +TY E+L + +E E +++ E A + R+++GAID E+
Sbjct: 366 NTSARMTYTDVYEILEQDNQELKEQYSELVPMFELMKELAEVLRTKRMRRGAIDFDFKES 425
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR---- 406
++ V P +++ + ++ + RL+ E M+ E +A + F+N+ +P YR
Sbjct: 426 KVLVDENGYP---VDVVIRERT-VSERLIEEFMLAANETVAEH--FHNMEVPAIYRIHED 479
Query: 407 GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+P+ +N V + A PE PV S+ +++ M+ A
Sbjct: 480 PKPEKLQRFFEFVTNFGIVVKGSGTQIHPRALQEIVESIAGTPEEPVISTMMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 540 YS-AESLGHFGLSTEFYTHFTSPIRRYPDLIVH 571
>gi|320538025|ref|ZP_08037928.1| RNB-like protein [Treponema phagedenis F0421]
gi|320145114|gb|EFW36827.1| RNB-like protein [Treponema phagedenis F0421]
Length = 616
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 154/320 (48%), Gaps = 31/320 (9%)
Query: 161 PGVEKFDHKDISNF-----LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQD 215
P +FDH S+ L++AE N DL+ + +AID + + + DDA+S D
Sbjct: 214 PYPARFDHSLYSSKIDIPPLKRAE----NITDLSGIPAFAIDNECSTDPDDAISF----D 265
Query: 216 GRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVC 275
G ++IHVA+P IEP + SD DA RG +++ P M EK A+E +L +
Sbjct: 266 GNY-LWIHVANPADTIEPDTKSDIDARGRGATLYAPEGASRMLGEK-AIEYFALGLTPLS 323
Query: 276 NAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALR 335
A++ + ++++G I ++ + I T M TY A E +++A LK L E A
Sbjct: 324 CALSFKIGINNEGEIISVGIERTKIAVTRM-TYRQAEE-----KKDDAALKPLFEIARRN 377
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+ R GA+ E I V D + +++ E Q +M +V EMM+L GEA A +
Sbjct: 378 TERRHAAGAVSIEMPEVYISV----DKDKTVHIR-EAQKFESMDMVREMMLLAGEAAARF 432
Query: 396 GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPG 455
N + Y QP + LPEG + M+ + P H LG+
Sbjct: 433 AFKNAIPFQYISQPFPELP----KKLPEGLACEYKKRRAMKPRNVG-TIPSIHAALGIAL 487
Query: 456 YVQFTSPIRRYMDLLAHYQV 475
Y Q TSP+RRY DL+ H Q+
Sbjct: 488 YSQVTSPLRRYGDLVCHQQL 507
>gi|419767475|ref|ZP_14293628.1| ribonuclease R [Streptococcus mitis SK579]
gi|383353018|gb|EID30645.1| ribonuclease R [Streptococcus mitis SK579]
Length = 784
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 156/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMR + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|194333503|ref|YP_002015363.1| ribonuclease R [Prosthecochloris aestuarii DSM 271]
gi|194311321|gb|ACF45716.1| ribonuclease R [Prosthecochloris aestuarii DSM 271]
Length = 795
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 153/343 (44%), Gaps = 56/343 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E++ +R D+ V+ ID +A + DDALS L G ++ +H+AD + Y++ G+L
Sbjct: 317 TEEDFRDRLDIRDKVVFTIDPVDAKDFDDALSLEPLPKGHFRIGVHIADVSHYVKEGNLL 376
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A KR TSV+L PM P KL+ E SL A ++ + G + ++
Sbjct: 377 DIEAQKRSTSVYLVDRVIPMLPSKLSEEICSLNPKVDRLAFSIFFKMSPQGEVLQHEFQK 436
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE +L+ E ELK L + + + + RL +G ++ T E R K+
Sbjct: 437 TVINSKRRFTYEEVDAILNAGKGEYHDELKNLDQISRILREKRLDEGGLEFETQEVRFKL 496
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-----NNLALP--YR--G 407
+ +P +I + + + RL+ E M+L +A Y S +A P YR G
Sbjct: 497 GSKGEPVEVI----KKERLASHRLIEEFMLLANRKVAEYISTRFAEKGKMAYPSIYREHG 552
Query: 408 QPQSNIDVSAFAHLPE---------GPVRSSAIVKIMRAAAI-DFRKPVRHGV------- 450
PQ V+ A+ + G ++ A V ++A A+ D K V HG
Sbjct: 553 SPQEE-KVAILANFVKKIGYTLQLTGKGKNGAPV--VKAKALRDLLKQV-HGTNVEFLVN 608
Query: 451 ---------------------LGLPGYVQFTSPIRRYMDLLAH 472
LG Y FTSPIRRY DL+ H
Sbjct: 609 ELVLRSMAKAQYTGTSDGHFGLGFEHYTHFTSPIRRYPDLVVH 651
>gi|89255960|ref|YP_513322.1| ribonuclease R [Francisella tularensis subsp. holarctica LVS]
gi|115314443|ref|YP_763166.1| ribonuclease R [Francisella tularensis subsp. holarctica OSU18]
gi|89143791|emb|CAJ78996.1| Ribonuclease R [Francisella tularensis subsp. holarctica LVS]
gi|115129342|gb|ABI82529.1| ribonuclease R [Francisella tularensis subsp. holarctica OSU18]
Length = 750
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 148/340 (43%), Gaps = 45/340 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV 446
P+R + D AH G V A+ +++ R D R
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMT 543
Query: 447 --------------RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVH 583
>gi|403061863|ref|YP_006650079.1| exoribonuclease R [Streptococcus suis S735]
gi|402809189|gb|AFR00681.1| exoribonuclease R [Streptococcus suis S735]
Length = 789
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DREAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLATYKAIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|89098803|ref|ZP_01171684.1| ribonuclease R [Bacillus sp. NRRL B-14911]
gi|89086479|gb|EAR65599.1| ribonuclease R [Bacillus sp. NRRL B-14911]
Length = 780
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + ID +A +LDDA++ +L++G K+ +H+AD T Y+ + D
Sbjct: 244 ESEIKNRRDLRDQTIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTYYVRENTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TS++L PM P +L+ SL ++ + + S G + + + S
Sbjct: 304 QEAEERATSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEMDSSGEVVNHEIFQS 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L EE + +++ E AA+ + R+ +GAID
Sbjct: 364 VIKTTERMTYHDVNKILTDKDEELMKRYEPLVPMFQLMEELAAVLRKKRMGRGAIDFDFK 423
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E+++ V P + V + A RL+ E M+ E +A + + ++ YR
Sbjct: 424 ESKVLVDEEGKPSDV----VLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIYRIHED 479
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 480 PKEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVQGTPEEMVISTVMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 540 YD---PESLGHFGLSTEFYTHFTSPIRRYPDLVVH 571
>gi|297566623|ref|YP_003685595.1| ribonuclease R [Meiothermus silvanus DSM 9946]
gi|296851072|gb|ADH64087.1| ribonuclease R [Meiothermus silvanus DSM 9946]
Length = 863
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 148/331 (44%), Gaps = 47/331 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R D L V+ ID +A + DDA+ RL+ R ++ +H+AD + Y+ GS DK
Sbjct: 253 EEIARRADFRSLNVFTIDGIDAKDFDDAIHVERLEGNRYRIGVHIADVSHYVREGSALDK 312
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +RGTSV+LP PM PEKL+ SL G+ ++V V + G + +S +
Sbjct: 313 EAYERGTSVYLPGRVLPMLPEKLSNGVCSLVPGQDRLVLSVLVEITDGGRVLRHSFREGV 372
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW-------RLQQGAIDTATLET 352
I+ LTY + + E K L AL L+ R+ GA+D E
Sbjct: 373 IRSKARLTY-TQVQAFAEGKGMPDEFKWLEPDLALLLELTRKLKAKRVAAGALDFHFTEV 431
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ + + I+L + + D A L+ E+M+L +A Y S L YR +
Sbjct: 432 KVDIGEAGE----IHLIPQTEPD-ARSLIEELMLLANRIVAKYLSDKGLPALYRVH-EDP 485
Query: 413 IDVSAFAHL-------------------------------PEGPVRSSAIVKIMRAAAID 441
D+ A+A L PE P+ S+ +++ ++ A
Sbjct: 486 TDM-AYAKLAAQLSKLGYELPGMEPSPKAMQAILKQVEGKPEAPMVSTLLLRSLKLARYA 544
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y+ FTSPIRRY DL+ H
Sbjct: 545 HEN-LGHFGLAAEHYLHFTSPIRRYPDLIVH 574
>gi|309800258|ref|ZP_07694434.1| ribonuclease R [Streptococcus infantis SK1302]
gi|308116111|gb|EFO53611.1| ribonuclease R [Streptococcus infantis SK1302]
Length = 780
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G ++ +H+AD + Y+ GS
Sbjct: 243 SEKDIEGRLDLRDEITFTIDGADAKDLDDAVHIKSLKNGNFELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVQSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDIVLRH----RGTAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|404486882|ref|ZP_11022070.1| ribonuclease R [Barnesiella intestinihominis YIT 11860]
gi|404335936|gb|EJZ62402.1| ribonuclease R [Barnesiella intestinihominis YIT 11860]
Length = 712
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 47/351 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ + R+D + + ID +A + DDALS RL +G +V +H+AD + Y++PGS+
Sbjct: 250 TDEEIAAREDFRQVTTFTIDPKDAKDFDDALSIRRLSNGNWEVGVHIADVSYYVKPGSII 309
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSV 295
DK+A RGTSV+L PM PE+L E SLR E + +T S + +G+ + + +
Sbjct: 310 DKEAESRGTSVYLVDRVVPMLPERLCNEICSLRPDE--DKLTFSCIFELNGNAEVQKSHI 367
Query: 296 DNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I+ YE A E++ + + E+ L++ A + R G+I+ E +
Sbjct: 368 ARTVIRSNRRFAYEEAQEVIETGEGDYKEEILALNDLAQKLRKRRFDNGSINFDRHEVKF 427
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQP 409
+ P I +Y + + A +L+ E M+L +A + A YR
Sbjct: 428 DIDESGKP---IGVYFK-VSKEANKLIEEFMLLANRTVAEFIGKPKDGKKPKAFVYRVHD 483
Query: 410 QSNID-VSAFAHL-------------------------------PEGPVRSSAIVKIMRA 437
+ D +++FA PE + + ++ M A
Sbjct: 484 LPDPDKMASFAAFITRFGYKIKTEGSKADLSKGINSLLANVQGKPEENLVETIAIRAM-A 542
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
A+ + H L Y FTSPIRRY DL+ H + A SV Q
Sbjct: 543 KAVYTTVNIGHYGLSFDYYTHFTSPIRRYPDLMVHRLLERYMAGGRSVNVQ 593
>gi|313204897|ref|YP_004043554.1| RNAse r [Paludibacter propionicigenes WB4]
gi|312444213|gb|ADQ80569.1| RNAse R [Paludibacter propionicigenes WB4]
Length = 712
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 158/349 (45%), Gaps = 49/349 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R D+ + + +D +A + DDALS +L DG +V +H+AD T Y+ P S+ ++
Sbjct: 253 DEVAKRIDMRSITTFTVDPRDAKDFDDALSLRKLDDGLWEVGVHIADVTHYVRPDSIIEQ 312
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDN 297
+ +R TSV+L T PM PE L+ SLR E + +T SV+ ++ I Y +
Sbjct: 313 EGRERATSVYLVDRTIPMLPEHLSNGICSLRPDE--DKLTYSVIFKMNDKAEIQHYKIAK 370
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++ + TYE A ++ E + E+ + A + + R + GAI +E R ++
Sbjct: 371 TVTRSNRRFTYEEAQAIIETGEGEYKDEILTMDRLAKILRKKRFENGAIAFDRVEVRFEI 430
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--------------------- 395
P ++++ ++Q D + +++ E M+L + +AT+
Sbjct: 431 DEKGKP---VSVFFKEQKD-SNKMIEEFMLLANKTVATHIGKPGKGQKAKTFVYRIHDVP 486
Query: 396 --GSFNNLA---------LPYRGQPQSNIDVSAFAHLPE--GPVRSSAI----VKIMRAA 438
NN A L G+ Q+ I S A L E G + I ++ M A
Sbjct: 487 NPDKLNNFAVFIKRFGYNLKTSGK-QTAISSSINALLDEVQGKKEQNLIETLAIRSM-AK 544
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGA 487
AI + H L Y FTSPIRRY D++ H + A SV A
Sbjct: 545 AIYSTSNMGHYGLAFDFYTHFTSPIRRYPDMMVHRLLEKYADGGRSVNA 593
>gi|451979665|ref|ZP_21928079.1| Ribonuclease R [Nitrospina gracilis 3/211]
gi|451763103|emb|CCQ89276.1| Ribonuclease R [Nitrospina gracilis 3/211]
Length = 704
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 89/335 (26%), Positives = 152/335 (45%), Gaps = 44/335 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ +++ R+DLT ++ ID + A + DDA++ R +D ++ +H+AD + Y+ G
Sbjct: 235 LEISDEERSRRRDLTDQMIFTIDGERAKDFDDAVTLTREKD-LYRLGVHIADVSHYVTEG 293
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S D++A KRGTS++ PM P KL+ E SLR E ++ +V +S G + +Y+
Sbjct: 294 SPLDEEAFKRGTSIYYAEGVIPMLPFKLSNEVCSLRPNEEHLTLSCDIVFNSKGEVVDYN 353
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDT 347
+ +SII+ TY LL + + E + LK + + + + + R Q+G++D
Sbjct: 354 IYDSIIESKIRFTYTQVASLLE-DGDPEGQFDEVMPILKDMEKLSRILRKKRFQEGSVDF 412
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E I + + I + + A ++ E M+ +A + NL + +R
Sbjct: 413 NIPEAEILMTQ----DGKIQTIRKAPHNIAHEIIEEFMLSANRVVAEDMAKKNLPVIHRI 468
Query: 408 QPQSNID----VSAFA----------------HL----------PEGPVRSSAIVKIMRA 437
+ + D FA HL PE + +++ M+
Sbjct: 469 HEEPDADRIHRFGEFAADFGYRLPSFKKVKSTHLQKLLERARDKPEERALNYVLLRSMKK 528
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + P H LG Y FTSPIRRY DL H
Sbjct: 529 AVYSEKDP-GHYCLGFEHYTHFTSPIRRYPDLFTH 562
>gi|449070895|ref|YP_007437975.1| putative ribonuclease [Chlamydophila psittaci Mat116]
gi|449039403|gb|AGE74827.1| putative ribonuclease [Chlamydophila psittaci Mat116]
Length = 567
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|335430002|ref|ZP_08556897.1| ribonuclease R [Haloplasma contractile SSD-17B]
gi|334888418|gb|EGM26715.1| ribonuclease R [Haloplasma contractile SSD-17B]
Length = 756
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 154/337 (45%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ +L R+DL + ID +A +LDDA++ +L +G K+ +H+AD + Y+ G
Sbjct: 235 TDKDLEGRRDLRDQTIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSYYVREGDPI 294
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A RGTSV+L PM P +L+ SL N + +S + D G + E+ +
Sbjct: 295 DREAFNRGTSVYLVDRVIPMIPHRLSNGICSLNPQ--VNRLVLSCEMEIDQTGDVVEHEI 352
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY + E+L E+ E + + E + + R +GAI+
Sbjct: 353 FQSVIKTTERMTYNAVNEILLDKNEQTRERYKDLIPLFERMHELFKILKKRRTNRGAINF 412
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT------------- 394
T E RI V ED +P ++ V + D A +++ E M++ E +A
Sbjct: 413 ETNEARIIV--DEDGKPY-DIKVRKRRD-AEKIIEEFMLVANETVAEHFHWLNFPFIYRI 468
Query: 395 ------------YGSFNNLALPYRGQPQSNIDVSAFAHL-------PEGPVRSSAIVKIM 435
Y N L +G+ ++ + AF + PE V ++ +V+ M
Sbjct: 469 HEDPKPEKLKRFYKVLNGLGYKIKGK-ENTVHPKAFQGILETVKGEPEEAVVNTLLVRSM 527
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A A + V H L Y FTSPIRRY D + H
Sbjct: 528 -AKAKYSEQSVGHYGLATEFYTHFTSPIRRYPDTIVH 563
>gi|312143213|ref|YP_003994659.1| ribonuclease R [Halanaerobium hydrogeniformans]
gi|311903864|gb|ADQ14305.1| ribonuclease R [Halanaerobium hydrogeniformans]
Length = 715
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 99/354 (27%), Positives = 163/354 (46%), Gaps = 59/354 (16%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL LK+ ID +A +LDDA+S ++ D + ++ +H+AD + Y++ GSL DK+A
Sbjct: 246 DRVDLRDLKLLTIDGADAKDLDDAVSIEKISDKKYRLGVHIADVSHYVKKGSLLDKEAYN 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG----SIAEYSVDNSI 299
R TS++L PM PEKL+ SL +TV + G I+++ + S+
Sbjct: 306 RATSIYLVDRVIPMLPEKLSNGICSLNPHVDRMTLTVFIEYKLCGKIGIEISDHQIVKSV 365
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAAL--------RLQWRLQQGAIDTATLE 351
IK + +TY+ A ++ E+ + KI E + +L+ RL++ + +++
Sbjct: 366 IKSNHRMTYDDAQAII-----EDKDEKIKDEYSDFVEEINMMNKLRERLRKNRFEEGSMD 420
Query: 352 ---TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMILCGEAIATYGSFNNLALPY 405
T +KV E +P V+ + P A +L+ E MI +A S+ + Y
Sbjct: 421 FNFTEVKVELDEQGKP-----VKLKKRPHREAEQLIEEFMIAANRIVAAEMSWREMPFIY 475
Query: 406 RGQPQSNID--------VSAFAHLPEG---------------PVRSSAIVKIMRAA---- 438
R + ++D + F + +G VR S KI+
Sbjct: 476 RIHEEPDLDRMIQFKEFIHNFGYELKGIKNGVHPRSLQAILEEVRGSKEEKIIETVMLRS 535
Query: 439 ---AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQ-AAAWVSVGAQ 488
A+ K + H LG+ Y FTSPIRRY DL AH + AA ++S Q
Sbjct: 536 LKKAVYSEKNIGHFGLGVTHYTHFTSPIRRYPDLTAHRIIKETIAAGYLSKNRQ 589
>gi|389856237|ref|YP_006358480.1| exoribonuclease R [Streptococcus suis ST1]
gi|353739955|gb|AER20962.1| exoribonuclease R [Streptococcus suis ST1]
Length = 789
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DREAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLATYKAIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|350563668|ref|ZP_08932489.1| ribonuclease R [Thioalkalimicrobium aerophilum AL3]
gi|349778803|gb|EGZ33154.1| ribonuclease R [Thioalkalimicrobium aerophilum AL3]
Length = 782
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/350 (29%), Positives = 154/350 (44%), Gaps = 49/350 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E + +RKDL L + ID +++ + DDA+ A R ++G ++ + +AD + Y++PGS
Sbjct: 262 TEQDYADRKDLRSLPLVTIDGEDSKDFDDAVFAKRRKNG-WRLVVAIADVSHYVKPGSEL 320
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQG--EVCNAVTVSVVLHSDGSIAE--- 292
DK+A +RG SV+ P PM PEKL+ + SL VC +S+ DG +
Sbjct: 321 DKEAYERGNSVYFPQRVIPMLPEKLSNDLCSLNPNVDRVCMVCDMSIT--EDGQLERSQF 378
Query: 293 -YSVDNSIIKPTYMLTYESATELLHLNLEEEAE----LKILSEAAALRLQWRLQQGAIDT 347
+V NS + TY ++ T+ E AE + L E + R ++GA++
Sbjct: 379 YQAVMNSKARLTYNQVHQMVTDSSSAFRAEFAEVVDAVDQLYELYHILHAARAERGALEF 438
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
T+ETRI + II + D A RL+ E M++ A A Y ++ L + YR
Sbjct: 439 DTVETRIVFDGERKIDKIIPVVRND----AHRLIEECMLMANVAAARYLKWHKLPIVYRV 494
Query: 407 -------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIM-RAAAI 440
G S D +G I IM R+
Sbjct: 495 HEPPKEEKLTKLRGFLKDFGLSLEGGDEPSAQDFDQVLQAAQGMPSEHLIKTIMLRSMNQ 554
Query: 441 DFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+P G GL Y FTSPIRRY DLL H + AW+ GAQ
Sbjct: 555 AVYQPDNKGHFGLNFEHYAHFTSPIRRYPDLLIHRAI---RQAWLKQGAQ 601
>gi|187931190|ref|YP_001891174.1| ribonuclease R [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712099|gb|ACD30396.1| ribonuclease R [Francisella tularensis subsp. mediasiatica FSC147]
Length = 765
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 147/341 (43%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH +G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKDGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|408790249|ref|ZP_11201878.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus florum 2F]
gi|408520471|gb|EKK20517.1| 3'-to-5' exoribonuclease RNase R [Lactobacillus florum 2F]
Length = 767
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 44/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + NR+D+T ++ ID +E+ +LDDA++A +L +G + +H+AD + Y++ GSL D+
Sbjct: 251 EEMKNREDITDQQLVTIDAEESKDLDDAVTAWKLSNGNYHLGVHIADVSHYVKQGSLLDR 310
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRGTSV+L PM P +L+ SL +GE+ ++ + ++ G + + S+
Sbjct: 311 EAYKRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEINPQGKVIRSRIHPSV 370
Query: 300 IKPTYMLTYESATELLHLN---LEEEAE-----LKILSEAAALRLQWRLQQGAIDTATLE 351
++ T +TY + +L + ++ E + E + + R ++GAID E
Sbjct: 371 MRSTKRMTYNAVNAILETKDAAVRKQYEDLVPMFDAMGELHRILYRSRRRRGAIDFNDDE 430
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------------------ 393
+I V P I++ + ++ A RLV M+ E +A
Sbjct: 431 AKIIVDQNGHP---IDIQLRNRG-VAERLVESFMLAANETVAETYHKAKVPFIYRIHENP 486
Query: 394 ------------TYGSFNNLALPYRGQPQSNIDV-SAFAHLPEGPVRSSAIVKIMRAAAI 440
T N A P QP++ +V + A PE + S +++ M+ A
Sbjct: 487 DATRVKSFFEFLTAFGINVKADPDHLQPKTLQNVLTKVAGTPEESMVSVMLLRSMQQAKY 546
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K V H LG Y FTSPIRRY D+ H
Sbjct: 547 -ADKCVGHFGLGAQYYTHFTSPIRRYPDMFIH 577
>gi|385809169|ref|YP_005845565.1| exoribonuclease R [Ignavibacterium album JCM 16511]
gi|383801217|gb|AFH48297.1| Exoribonuclease R [Ignavibacterium album JCM 16511]
Length = 698
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 147/336 (43%), Gaps = 56/336 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
++L R D V ID ++A + DDALS + + G V IH+AD + Y++ S D+
Sbjct: 239 NDLKQRIDFRQKNVITIDPEDAKDFDDALSIEKNEKGNFIVGIHIADVSHYVDYDSYLDQ 298
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +RG SV+L PM PE L+ SL E +V V + G I +Y + ++
Sbjct: 299 EAQQRGNSVYLVGRVIPMLPENLSNNICSLVPNEDRLTYSVIVEMTPRGRIVDYQIKKTV 358
Query: 300 IKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
I Y+ +++ + AE L + + A LR + R+++G+ D TLE + K+
Sbjct: 359 INSKRRFNYDEVQKIIETGEGDFAEDILNLDTLAKILR-RKRMKEGSFDFNTLEVKFKLD 417
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI---- 413
P + Y++ D M LV E M+L + +A + +ALP RG+ + +
Sbjct: 418 EYGIP---LEAYIKSMKDSNM-LVEEFMLLANKIVAQH-----IALPKRGEAKPFVYRVH 468
Query: 414 ----------------------------DVSAFAHL-------PEGPVRSSAIVKIMRAA 438
S F L E P+ + ++ M A
Sbjct: 469 DLPDQEKIMEFVRFVKSLGYQVSQNLIKKTSEFQKLLDQVKGKEEEPLINELAIRSMAKA 528
Query: 439 AIDFRKP--VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
F P + H LG Y FTSPIRRY DLL H
Sbjct: 529 ---FYSPTNIGHYGLGFKYYTHFTSPIRRYSDLLVH 561
>gi|156501956|ref|YP_001428021.1| ribonuclease R [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|156252559|gb|ABU61065.1| ribonuclease R [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 723
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 142/328 (43%), Gaps = 43/328 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+E S D DA +
Sbjct: 233 NRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYVEKDSALDLDAKR 292
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PM PEKL+ SLR E ++ + + +G ++ Y +++I
Sbjct: 293 RSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLSRYKFYSAVINSK 352
Query: 304 YMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY +LL +E EL L E + Q R ++GAID T+ET+I
Sbjct: 353 ARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERGAIDFDTVETQII 412
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
+ E I+ + D A RL+ E M++ A A + + P+R + D
Sbjct: 413 LDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPKEDR 468
Query: 416 SA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV------------ 446
AH G V A+ +++ R D R
Sbjct: 469 METLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMTLRSMNQAVYSIN 528
Query: 447 --RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 529 NDGHFGLAYSEYTHFTSPIRRYPDLVVH 556
>gi|346722806|ref|YP_001180114.2| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|345106777|gb|ABP66923.2| ribonuclease R [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 710
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 166/338 (49%), Gaps = 54/338 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R DL ++ ID ++A + DDA+S +L +G + +H+AD + Y++P + D
Sbjct: 245 EEEIEGRVDLRDWTIFTIDGEDAKDFDDAVSIKKLPNGNYLLGVHIADVSHYVKPNTHLD 304
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
++A +RGTSV+L PM P KL+ SL + +T SV++ D G++ ++ +
Sbjct: 305 REAFRRGTSVYLVDRVIPMLPFKLSNGICSLNPN--VDRLTFSVLMEIDKNGNVVKHDIF 362
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEA-----------ELKILSEAAALRLQWRLQQGAI 345
S+I+ +TY + T++L EE+ +L+++ E A + + R+++GA+
Sbjct: 363 ESVIRSKERMTYTNVTKILK---EEDKDLLKRYEHIREDLELMRELALILREKRMKRGAL 419
Query: 346 DTATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
D ET KV ++ PI I Y + + +++ E M++C E +A + + N+
Sbjct: 420 DFDFDET--KVILDKNGRPIDIRRY---ELTISNKIIEEFMLICNETVANHFFWLNVPFL 474
Query: 405 YRGQPQSNID--------VSAFAHLPEG------PVRSSAIV---------KIMRAAAID 441
YR + +I+ + ++ +G P AI+ +++ +
Sbjct: 475 YRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKIHPKALQAILEQSRGTPEERVIHTLCLR 534
Query: 442 FRKPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
K R+ G GL Y FTSPIRRY DL+ H
Sbjct: 535 SLKKARYCEENLGHFGLSTDYYCHFTSPIRRYPDLVIH 572
>gi|189424308|ref|YP_001951485.1| ribonuclease R [Geobacter lovleyi SZ]
gi|189420567|gb|ACD94965.1| ribonuclease R [Geobacter lovleyi SZ]
Length = 752
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 161/338 (47%), Gaps = 49/338 (14%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q +++L +R DL L ID + A + DDA+S +R + ++++ +AD + YIEPGS
Sbjct: 236 QVGKNDLKDRVDLRKLPTVTIDGETAKDFDDAVS-IRQEGHNFRLWVSIADVSHYIEPGS 294
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
+ D++A RGTSV+ P PM PE+L+ SL +T ++ G + E S
Sbjct: 295 MLDREAYLRGTSVYFPDRCIPMLPERLSNGICSLNPHLDRLTMTAEMLFDQQGRMLESSF 354
Query: 296 DNSIIKPTYMLTYESATELL----HLNLEEE---AELKILSEAAALRLQ-WRLQQGAIDT 347
+S+IK LTY +++ LEE+ A + + + AL LQ R Q+G+ID
Sbjct: 355 YSSVIKSDARLTYTKVKQVIIDGDEKVLEEDRGLAPMLLQMKELALILQTMRRQRGSIDF 414
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
E I + E II + + + A +L+ E M+ EA+A + S +A YR
Sbjct: 415 DLPEPEIILGLTGQTEAII----KSERNLAHQLIEEFMLAANEAVARFVSGQEMAFIYRV 470
Query: 407 GQPQSNIDVSAFAH--LPEG--------PVRSSAIVKIMRAAAIDFRKP----VRHGVL- 451
+P ++AF LP G V SA+ +++ A KP V +G+L
Sbjct: 471 HEPPDPTKLTAFRDFILPFGFTLEMQGDRVEPSAMQRLISDAE---GKPEERLVNYGLLR 527
Query: 452 ---------------GLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL+ H
Sbjct: 528 CMKQARYAAENLKHFGLASSCYTHFTSPIRRYPDLIVH 565
>gi|407453737|ref|YP_006732845.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci 84/55]
gi|405780496|gb|AFS19246.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci 84/55]
Length = 691
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|167763926|ref|ZP_02436053.1| hypothetical protein BACSTE_02308 [Bacteroides stercoris ATCC
43183]
gi|167698042|gb|EDS14621.1| ribonuclease R [Bacteroides stercoris ATCC 43183]
Length = 719
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 149/328 (45%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS +L+D +V +H+AD T Y+ GS+ DK+A KR
Sbjct: 263 REDFRNVTTFTIDPKDAKDFDDALSIRKLKDNLWEVGVHIADVTHYVTEGSIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSAIFEMTDKGEVKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ S A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDSLAKILR-EKRFTAGAINFDRYEVKFEIDEQGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQ-- 410
P +++Y ++ D A +LV E M+L +A + PYR P+
Sbjct: 441 P---VSVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKPKVFPYRIHDLPDPEKL 496
Query: 411 ------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRK 444
+ DVS + HL E + + ++ M+ A
Sbjct: 497 DNLAQFIARFGYKLRTGGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY D+L H
Sbjct: 557 -IGHYGLAFDYYTHFTSPIRRYPDMLVH 583
>gi|410457285|ref|ZP_11311099.1| ribonuclease R [Bacillus bataviensis LMG 21833]
gi|409925321|gb|EKN62537.1| ribonuclease R [Bacillus bataviensis LMG 21833]
Length = 794
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L NR+DL + + ID +A +LDDA++ +L +G K+ +H+AD + Y++ G+ D
Sbjct: 244 ESELANRRDLRNETIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSYYVKEGTPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A +R TSV+L PM P +L+ SL ++ + + S+G++ + + S
Sbjct: 304 LEAEERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLVLSCEMEITSEGAVVSHEIFQS 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE---------LKILSEAAALRLQWRLQQGAIDTAT 349
+IK T +TY L+ + EEE +++ E AA+ R+++GAID
Sbjct: 364 VIKTTERMTYHDVN-LILVEKEEETRKRYEPIVPMFELMEELAAILRNKRMKRGAIDFDF 422
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E+++ V P + V + A +L+ E M+ E +A + + ++ YR
Sbjct: 423 KESKVLVDEEGKPTDV----VLRERSVAEKLIEEFMLAANETVAEHFHWMDVPFIYRIHE 478
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D ++ F ++ PE V S +++ M+ A
Sbjct: 479 DPKEDKLRRFFEFITNFGYIVKGTANDVHPKALQEIIEEVQGKPEEMVVSKVMLRSMQQA 538
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY D + H
Sbjct: 539 KYD---PESLGHFGLSTEFYTHFTSPIRRYPDTIVH 571
>gi|322385827|ref|ZP_08059470.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
gi|417922355|ref|ZP_12565843.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
gi|321270112|gb|EFX53029.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
gi|342832452|gb|EGU66747.1| ribonuclease R [Streptococcus cristatus ATCC 51100]
Length = 782
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++ R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 SENDFEGRVDLREEITFTIDGADAKDLDDAVHIKRLKNGHFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHII 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++I T+ +TY +++ + E+ + K + S + +RL R ++GA++
Sbjct: 362 TQTVINTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVRLHEILESMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + + NL YR
Sbjct: 422 TNEAKIIVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM A + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMEAVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|290954594|ref|ZP_06559215.1| ribonuclease R [Francisella tularensis subsp. holarctica URFT1]
Length = 680
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 142/328 (43%), Gaps = 43/328 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+E S D DA +
Sbjct: 194 NRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYVEKDSALDLDAKR 253
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PM PEKL+ SLR E ++ + + +G ++ Y +++I
Sbjct: 254 RSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLSRYKFYSAVINSK 313
Query: 304 YMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY +LL +E EL L E + Q R ++GAID T+ET+I
Sbjct: 314 ARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERGAIDFDTVETQII 373
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
+ E I+ + D A RL+ E M++ A A + + P+R + D
Sbjct: 374 LDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPKEDR 429
Query: 416 SA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV------------ 446
AH G V A+ +++ R D R
Sbjct: 430 METLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMTLRSMNQAVYSIN 489
Query: 447 --RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 490 NDGHFGLAYSEYTHFTSPIRRYPDLVVH 517
>gi|423050291|ref|YP_007008725.1| ribonuclease R [Francisella tularensis subsp. holarctica F92]
gi|421951013|gb|AFX70262.1| ribonuclease R [Francisella tularensis subsp. holarctica F92]
Length = 750
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 142/328 (43%), Gaps = 43/328 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+E S D DA +
Sbjct: 260 NRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYVEKDSALDLDAKR 319
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TSV+ P PM PEKL+ SLR E ++ + + +G ++ Y +++I
Sbjct: 320 RSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLSRYKFYSAVINSK 379
Query: 304 YMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY +LL +E EL L E + Q R ++GAID T+ET+I
Sbjct: 380 ARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERGAIDFDTVETQII 439
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
+ E I+ + D A RL+ E M++ A A + + P+R + D
Sbjct: 440 LDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTSPFRVHSEPKEDR 495
Query: 416 SA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV------------ 446
AH G V A+ +++ R D R
Sbjct: 496 METLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMTLRSMNQAVYSIN 555
Query: 447 --RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 556 NDGHFGLAYSEYTHFTSPIRRYPDLVVH 583
>gi|357639310|ref|ZP_09137183.1| ribonuclease R [Streptococcus urinalis 2285-97]
gi|418418176|ref|ZP_12991367.1| ribonuclease R [Streptococcus urinalis FB127-CNA-2]
gi|357587764|gb|EHJ57172.1| ribonuclease R [Streptococcus urinalis 2285-97]
gi|410869275|gb|EKS17238.1| ribonuclease R [Streptococcus urinalis FB127-CNA-2]
Length = 790
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 51/330 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y++ GS DK+A+KR
Sbjct: 252 RIDLRQEITFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVKEGSALDKEAVKR 311
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVDNSIIKP 302
GTSV++ PM PE+L+ SL + +T S ++ + DG + + + S+IK
Sbjct: 312 GTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEINKDGKVLHHQIAQSVIKT 369
Query: 303 TYMLTYESATELLHLNLEE-------EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
TY +TY E++ N E +K ++E + + R+++ A++ T E RI
Sbjct: 370 TYRMTYNDVNEMIAGNEEVINQYSKISESVKDMTELHHILEKMRVRRCALNFDTSEARII 429
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQPQ--- 410
V + P I V Q A R++ M+ E +A + + L YR +P+
Sbjct: 430 VNDKGMPVDI----VLRQRGTAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEPKAEK 485
Query: 411 -------------------SNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDFRK 444
S I A P V + +++ M+ A
Sbjct: 486 LQKFMDYASIFGIQIHGTASKISQEALQEFMAKVEGKPGAEVLNMMLLRSMQQARYSEHN 545
Query: 445 PVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 546 ---HGHYGLAAEYYTHFTSPIRRYPDLLVH 572
>gi|342163642|ref|YP_004768281.1| exoribonuclease R [Streptococcus pseudopneumoniae IS7493]
gi|341933524|gb|AEL10421.1| exoribonuclease R [Streptococcus pseudopneumoniae IS7493]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/329 (29%), Positives = 156/329 (47%), Gaps = 49/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+ R
Sbjct: 250 RLDLRDEIIFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALNR 309
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 310 ATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIKT 367
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAAL------RLQ-WRLQQGAIDTATLETRIK 355
++ +TY ++L + E+ E + + + L RL+ R+++GA++ T E +I
Sbjct: 368 SFRMTYSDVNDILASDEEKRQEYQKIVPSIELMAKLHERLENMRVKRGALNLDTNEAKIL 427
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP-- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 428 VDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPKA 481
Query: 410 ---QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV---------------- 446
Q ID S+F + + A+ IMRA + V
Sbjct: 482 EKVQKFIDYASSFGIRIYGTASEMSQEALQDIMRAVEGEPYADVLSMMLLRSMQEARYSE 541
Query: 447 -RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 542 YNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|424824930|ref|ZP_18249917.1| putative ribonuclease [Chlamydophila abortus LLG]
gi|333410029|gb|EGK69016.1| putative ribonuclease [Chlamydophila abortus LLG]
Length = 682
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 188 VIEETHHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P LA SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALADNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 521
>gi|422938412|ref|YP_007011559.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC200]
gi|407293563|gb|AFT92469.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC200]
Length = 750
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 148/340 (43%), Gaps = 45/340 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVVIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV 446
P+R + D AH G V A+ +++ R D R
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMT 543
Query: 447 --------------RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVH 583
>gi|322376471|ref|ZP_08050964.1| ribonuclease R [Streptococcus sp. M334]
gi|321282278|gb|EFX59285.1| ribonuclease R [Streptococcus sp. M334]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKTLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDKEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|118442907|ref|YP_877499.1| ribonuclease R [Clostridium novyi NT]
gi|118133363|gb|ABK60407.1| ribonuclease R [Clostridium novyi NT]
Length = 745
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 154/325 (47%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL + + ID ++A +LDDA+S +L +G + +H+AD + Y++ S DK+A+KR
Sbjct: 244 REDLRDVVMVTIDGEDAKDLDDAVSIEKLDNGNYLLGVHIADVSHYVKEKSPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P++L+ SL A+T + +++ G + Y + S+IK
Sbjct: 304 ATSVYLINKVIPMLPKELSNGICSLNPKVDRLAMTCFMEINNKGKVVNYRITKSVIKTNE 363
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L E E K++ E + R+ +GAID E++I +
Sbjct: 364 RMTYTDVTKMLRDKDEATIEKYKDLYKYFKLMEELCEILYNKRISRGAIDFEFEESKIIL 423
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
+ P I++ ++A A R++ E M++C E +A + + + YR + +
Sbjct: 424 DDNGKP---IDVKPYERA-IANRIIEEFMLVCNETVAEHMYWTKIPFVYRIHEDPDEEKL 479
Query: 415 --VSAFAH------LPEGPVRSSAIVKIMRAAA------------IDFRKPVRH-----G 449
FA+ P V A+ +I+ +A + K R+ G
Sbjct: 480 QKFREFAYNLGYFIKPTKEVHPKALQEIIESARGKKEETVVNTLLLRSLKQARYAPQCVG 539
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL+ H
Sbjct: 540 HFGLAAKYYCHFTSPIRRYPDLIIH 564
>gi|419442460|ref|ZP_13982491.1| ribonuclease R [Streptococcus pneumoniae GA13224]
gi|379554427|gb|EHZ19507.1| ribonuclease R [Streptococcus pneumoniae GA13224]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|421298441|ref|ZP_15749129.1| ribonuclease R [Streptococcus pneumoniae GA60080]
gi|395902397|gb|EJH13330.1| ribonuclease R [Streptococcus pneumoniae GA60080]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|260777275|ref|ZP_05886169.1| exoribonuclease II [Vibrio coralliilyticus ATCC BAA-450]
gi|260606941|gb|EEX33215.1| exoribonuclease II [Vibrio coralliilyticus ATCC BAA-450]
Length = 667
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 185/409 (45%), Gaps = 55/409 (13%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQ---NGASCSIKPQQVTFVVPGVEK 165
++KGL + K+ D V+ + + P G + V A I P VT +
Sbjct: 115 VKKGLKSDDFKEGDWVVAHLIRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPN 174
Query: 166 FDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVA 225
+ I N+ K +D L R D+TH+ ID + ++DDAL A + + G ++ I +A
Sbjct: 175 SEPAGIDNWEIK-DDAELERVDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIA 233
Query: 226 DPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH 285
DPT YI P S DK A +RG +++LP PM P LA E SL + E A+ +V +
Sbjct: 234 DPTAYITPDSDMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENEERPALCCTVTIS 293
Query: 286 SDGSIA-EYSVDNSIIKPTYMLTYESATELLHLN-------LEEEAEL-KILSEAAALRL 336
DG I + + IK L Y+ ++ L EE AE+ + L E + R
Sbjct: 294 KDGVIGDDVKFFAANIKSHARLAYDHVSDWLETGQSEAWQPTEEIAEIVRDLYEFSKARA 353
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAI 392
+WR + + R +++ D ++ ++ D A RLV E MI +C G+A+
Sbjct: 354 EWRETHAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANRLVEESMITANICAGKAL 409
Query: 393 -ATY--GSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKI------------M 435
A++ G FN A +P+ DV + PEG P + ++V +
Sbjct: 410 KASFDSGVFNTHA---GFKPEKIADVIELVN-PEGELPFTAESVVTLEGFAELRRWLAKQ 465
Query: 436 RAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ +D R +P+ H +GL Y +TSPIR+Y D++ H
Sbjct: 466 ETSYLDNRIRKYQAYSEIGNQPLPHYAMGLELYATWTSPIRKYGDMINH 514
>gi|427385040|ref|ZP_18881545.1| ribonuclease R [Bacteroides oleiciplenus YIT 12058]
gi|425727208|gb|EKU90068.1| ribonuclease R [Bacteroides oleiciplenus YIT 12058]
Length = 713
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 155/335 (46%), Gaps = 47/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D + + ID +A + DDALS +L++G +V +H+AD + Y+ G +
Sbjct: 252 SDEEIAKREDFRGVTTFTIDPKDAKDFDDALSIRKLKEGLWEVGVHIADVSHYVTEGGII 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + V +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSVIFDINEKGDVKNARVVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++IK TYE A +++ + +EE L + + A ALR Q R GAI+ E +
Sbjct: 372 TVIKSDRRFTYEEAQQIIETKEGDFKEEV-LMLDTIAKALR-QKRFVAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR--- 406
++ + P I++Y ++ D A +LV E M+L +A + PYR
Sbjct: 430 EIDDKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKPKVFPYRIHD 485
Query: 407 -GQPQ--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRA 437
P+ + DVS + HL E + + ++ M+
Sbjct: 486 LPDPEKLDNLAQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L Y FTSPIRR+ D++ H
Sbjct: 546 ARYSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|329942561|ref|ZP_08291371.1| vacB and RNase II 3'-5' exoribonucleases family protein
[Chlamydophila psittaci Cal10]
gi|392376445|ref|YP_004064223.1| putative ribonuclease [Chlamydophila psittaci RD1]
gi|313847788|emb|CBY16778.1| putative ribonuclease [Chlamydophila psittaci RD1]
gi|328815471|gb|EGF85459.1| vacB and RNase II 3'-5' exoribonucleases family protein
[Chlamydophila psittaci Cal10]
Length = 682
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 188 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 521
>gi|148244964|ref|YP_001219658.1| ribonuclease II family protein [Candidatus Vesicomyosocius okutanii
HA]
gi|146326791|dbj|BAF61934.1| ribonuclease II family protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 601
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 150/302 (49%), Gaps = 34/302 (11%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
++R DLTHL YAID ++++ DDA+S DG K++IH+AD + GS D A
Sbjct: 218 VDRVDLTHLSSYAIDNFDSNDADDAISV----DGD-KIWIHIADVSLIATAGSELDSYAQ 272
Query: 243 KRGTSVFLPTATYPMFP---EKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
KR ++++LP M P K+ G++ E +A+++ L G I V SI
Sbjct: 273 KRASNLYLPEQIIHMLPISVTKMCALGLT----ETSHALSIGFTLEL-GEINNVEVVRSI 327
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP 359
IK T ++Y++A +L N E ++L+ +++A Q+R + GAI I+
Sbjct: 328 IKVT-NISYDNADGMLVSN-EYLSKLQSITKAHK---QYRYKNGAISLNLPNVDIRFRQG 382
Query: 360 EDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-----GQPQSNID 414
+ L + + + LV+EMM++ G +A + NN+ +PY G Q +D
Sbjct: 383 Q------VLITQQRLSKSRELVAEMMVMAGRVVAQFAVDNNIVMPYTIQDKGGFSQEILD 436
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
L E S K + +A K + H LG+ Y++ TSP+RRY+DL AH Q
Sbjct: 437 NQDTLSLSE----SFKATKFFKRSATSI-KNLPHFGLGVKAYLRITSPLRRYLDLFAHQQ 491
Query: 475 VG 476
+
Sbjct: 492 LS 493
>gi|332287192|ref|YP_004422093.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
6BC]
gi|384450345|ref|YP_005662945.1| exoribonuclease, VacB/Rnb family [Chlamydophila psittaci 6BC]
gi|384451345|ref|YP_005663943.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
01DC11]
gi|384452321|ref|YP_005664918.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
08DC60]
gi|384453295|ref|YP_005665891.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
C19/98]
gi|384454273|ref|YP_005666868.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
02DC15]
gi|325506838|gb|ADZ18476.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
6BC]
gi|328914439|gb|AEB55272.1| exoribonuclease, VacB/Rnb family [Chlamydophila psittaci 6BC]
gi|334692076|gb|AEG85295.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
C19/98]
gi|334693055|gb|AEG86273.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
01DC11]
gi|334694030|gb|AEG87247.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
02DC15]
gi|334695010|gb|AEG88226.1| putative vacB/Rnb family exoribonuclease [Chlamydophila psittaci
08DC60]
Length = 681
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|307706472|ref|ZP_07643281.1| ribonuclease R [Streptococcus mitis SK321]
gi|307618182|gb|EFN97340.1| ribonuclease R [Streptococcus mitis SK321]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDKEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVKGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|310657965|ref|YP_003935686.1| ribonuclease R [[Clostridium] sticklandii]
gi|308824743|emb|CBH20781.1| ribonuclease R [[Clostridium] sticklandii]
Length = 706
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 151/332 (45%), Gaps = 52/332 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL + +Y ID +A +LDDA+S +L +G K+ +H+AD T Y+ G+ D +A+K
Sbjct: 246 SRLDLRNELIYTIDGSDAKDLDDAISIEKLNNGNYKLGVHIADVTHYVTEGAPLDDEALK 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIK 301
RGTSV+L PM P KL+ SL + +T+S ++ D G + + + ++I
Sbjct: 306 RGTSVYLVDTVIPMLPPKLSNGVCSLHPD--VDRLTLSCIMEIDEKGKVVSHEIKKTVIN 363
Query: 302 PTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETR 353
L YE +++L + EE + LK+ E A + R Q+GA+D E++
Sbjct: 364 SKARLVYEDVSDILENDNEELKQKYSYILDKLKLSEELAKILTARRSQRGAMDFDFPESK 423
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ----P 409
I + + II A R++ E M++ E +A + + YR P
Sbjct: 424 ILMDEAGNVTDIIKY----DRRIANRIIEEFMLIANETVAEQFFWAQIPFVYRVHENPDP 479
Query: 410 QSNID----VSAFAHLPEGPVR-----------------------SSAIVKIMRAAAIDF 442
+ D + AF + +G V S+ +++ ++ A
Sbjct: 480 EKIRDFVKFIGAFGYTLKGDVEEIHPKELQKLLGDIENTKEELVISTLMLRSLKQARY-- 537
Query: 443 RKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P+ G GL Y FTSPIRRY DL H
Sbjct: 538 -SPICTGHFGLAAKYYTHFTSPIRRYPDLQIH 568
>gi|148992889|ref|ZP_01822508.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|168490206|ref|ZP_02714405.1| ribonuclease R [Streptococcus pneumoniae SP195]
gi|417678927|ref|ZP_12328324.1| ribonuclease R [Streptococcus pneumoniae GA17570]
gi|418125600|ref|ZP_12762510.1| ribonuclease R [Streptococcus pneumoniae GA44511]
gi|418191520|ref|ZP_12828024.1| ribonuclease R [Streptococcus pneumoniae GA47388]
gi|418214147|ref|ZP_12840882.1| ribonuclease R [Streptococcus pneumoniae GA54644]
gi|418234172|ref|ZP_12860751.1| ribonuclease R [Streptococcus pneumoniae GA08780]
gi|419484160|ref|ZP_14023936.1| ribonuclease R [Streptococcus pneumoniae GA43257]
gi|419508045|ref|ZP_14047698.1| ribonuclease R [Streptococcus pneumoniae GA49542]
gi|421220124|ref|ZP_15676974.1| ribonuclease R [Streptococcus pneumoniae 2070425]
gi|421222451|ref|ZP_15679242.1| ribonuclease R [Streptococcus pneumoniae 2070531]
gi|421278750|ref|ZP_15729558.1| ribonuclease R [Streptococcus pneumoniae GA17301]
gi|421294071|ref|ZP_15744794.1| ribonuclease R [Streptococcus pneumoniae GA56113]
gi|421300842|ref|ZP_15751512.1| ribonuclease R [Streptococcus pneumoniae GA19998]
gi|147928341|gb|EDK79357.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|183571427|gb|EDT91955.1| ribonuclease R [Streptococcus pneumoniae SP195]
gi|332073306|gb|EGI83785.1| ribonuclease R [Streptococcus pneumoniae GA17570]
gi|353797566|gb|EHD77899.1| ribonuclease R [Streptococcus pneumoniae GA44511]
gi|353857421|gb|EHE37384.1| ribonuclease R [Streptococcus pneumoniae GA47388]
gi|353871430|gb|EHE51301.1| ribonuclease R [Streptococcus pneumoniae GA54644]
gi|353888417|gb|EHE68191.1| ribonuclease R [Streptococcus pneumoniae GA08780]
gi|379583671|gb|EHZ48548.1| ribonuclease R [Streptococcus pneumoniae GA43257]
gi|379611763|gb|EHZ76485.1| ribonuclease R [Streptococcus pneumoniae GA49542]
gi|395588401|gb|EJG48731.1| ribonuclease R [Streptococcus pneumoniae 2070425]
gi|395588619|gb|EJG48947.1| ribonuclease R [Streptococcus pneumoniae 2070531]
gi|395880183|gb|EJG91236.1| ribonuclease R [Streptococcus pneumoniae GA17301]
gi|395894361|gb|EJH05341.1| ribonuclease R [Streptococcus pneumoniae GA56113]
gi|395898402|gb|EJH09346.1| ribonuclease R [Streptococcus pneumoniae GA19998]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|149006346|ref|ZP_01830058.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|417676729|ref|ZP_12326140.1| ribonuclease R [Streptococcus pneumoniae GA17545]
gi|418096087|ref|ZP_12733202.1| ribonuclease R [Streptococcus pneumoniae GA16531]
gi|418155010|ref|ZP_12791741.1| ribonuclease R [Streptococcus pneumoniae GA16242]
gi|418225399|ref|ZP_12852028.1| ribonuclease R [Streptococcus pneumoniae NP112]
gi|419466417|ref|ZP_14006300.1| ribonuclease R [Streptococcus pneumoniae GA05248]
gi|419512370|ref|ZP_14052004.1| ribonuclease R [Streptococcus pneumoniae GA05578]
gi|419516650|ref|ZP_14056268.1| ribonuclease R [Streptococcus pneumoniae GA02506]
gi|421283164|ref|ZP_15733951.1| ribonuclease R [Streptococcus pneumoniae GA04216]
gi|147762123|gb|EDK69085.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|332075589|gb|EGI86057.1| ribonuclease R [Streptococcus pneumoniae GA17545]
gi|353771074|gb|EHD51585.1| ribonuclease R [Streptococcus pneumoniae GA16531]
gi|353823302|gb|EHE03477.1| ribonuclease R [Streptococcus pneumoniae GA16242]
gi|353882707|gb|EHE62518.1| ribonuclease R [Streptococcus pneumoniae NP112]
gi|379544540|gb|EHZ09684.1| ribonuclease R [Streptococcus pneumoniae GA05248]
gi|379636840|gb|EIA01398.1| ribonuclease R [Streptococcus pneumoniae GA05578]
gi|379640653|gb|EIA05192.1| ribonuclease R [Streptococcus pneumoniae GA02506]
gi|395881127|gb|EJG92176.1| ribonuclease R [Streptococcus pneumoniae GA04216]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQACYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|419970937|ref|ZP_14486407.1| ribonuclease R [Porphyromonas gingivalis W50]
gi|392609658|gb|EIW92462.1| ribonuclease R [Porphyromonas gingivalis W50]
Length = 731
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 269 TEEELARREDFRSILTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 328
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 329 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 388
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 389 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-KERFQNGAIAFERKEVRFE 447
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 448 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 503
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 504 PDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 562
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI + H L Y FTSPIRRY DL+ H
Sbjct: 563 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVH 596
>gi|421211079|ref|ZP_15668063.1| ribonuclease R [Streptococcus pneumoniae 2070035]
gi|421231747|ref|ZP_15688392.1| ribonuclease R [Streptococcus pneumoniae 2080076]
gi|395573802|gb|EJG34389.1| ribonuclease R [Streptococcus pneumoniae 2070035]
gi|395596237|gb|EJG56459.1| ribonuclease R [Streptococcus pneumoniae 2080076]
Length = 784
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVLSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|365156006|ref|ZP_09352345.1| ribonuclease R [Bacillus smithii 7_3_47FAA]
gi|363627786|gb|EHL78636.1| ribonuclease R [Bacillus smithii 7_3_47FAA]
Length = 774
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 157/336 (46%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + + ID +A +LDDA++ +L +G K+ +H+AD + Y++ GS D
Sbjct: 244 ESEIRNRRDLRNELIVTIDGPDAKDLDDAVTVTKLDNGHYKLGVHIADVSYYVKEGSPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +RGTSV+L PM P +L+ SL ++ + ++ G + + + S
Sbjct: 304 REAFERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINEQGEVVSHEIFES 363
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKI-----------LSEAAALRLQWRLQQGAIDT 347
+I+ T +TYE +L ++++ EL+ ++E A + R+++GAID
Sbjct: 364 VIRTTERMTYEDVNAIL---VDKDEELRKRYEPLVPMFERMAELAEILRNKRMKRGAIDF 420
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E+++ V E+ +P+ + E A RL+ E M+ E +A + + ++ YR
Sbjct: 421 DFKESKVIVD--ENGKPVDVVLRERSV--AERLIEEFMLAANETVAEHFHWLDVPFIYRI 476
Query: 408 QPQSNID-------------------------------VSAFAHLPEGPVRSSAIVKIMR 436
D + A PE V S+ +++ M+
Sbjct: 477 HEDPKEDKLQRFFEFITNFGLVVKGTANSVHPRALQEIIEAVQGKPEEMVVSTVMLRSMQ 536
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + + + H L Y FTSPIRRY DL+ H
Sbjct: 537 QAKY-YPESLGHFGLSTDFYTHFTSPIRRYPDLIVH 571
>gi|323351181|ref|ZP_08086837.1| ribonuclease R [Streptococcus sanguinis VMC66]
gi|322122405|gb|EFX94116.1| ribonuclease R [Streptococcus sanguinis VMC66]
Length = 782
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 154/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R DL + ID +A +LDDA+ RL++G ++ +H+AD + Y++ GS
Sbjct: 244 TESDLKERLDLRDEITFTIDGADAKDLDDAVHIKRLKNGNFELGVHIADVSYYVKEGSEL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVVKHTI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ + E+ + K + + +Q R ++GA++
Sbjct: 362 TQTVIKTTFRMTYSDVNDIIAGDQEKAEQFKAIVPSIDSMVQLHEILENMRFKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V P I V Q A R++ M++ E +A + NL YR
Sbjct: 422 TNEAKIMVNKEGRPVDI----VLRQRGIAERMIESFMLVANETVAENFAKLNLPFIYRIH 477
Query: 407 -----GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV----------- 446
+ Q ID S+F G S A+ IM + + V
Sbjct: 478 EEPKAEKVQKFIDYASSFGIRIYGTASSMSQQALQDIMESVKDQPYEDVLSMMLLRSMQQ 537
Query: 447 ------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|422855107|ref|ZP_16901765.1| ribonuclease R [Streptococcus sanguinis SK1]
gi|422862090|ref|ZP_16908722.1| ribonuclease R [Streptococcus sanguinis SK408]
gi|327463084|gb|EGF09405.1| ribonuclease R [Streptococcus sanguinis SK1]
gi|327474685|gb|EGF20090.1| ribonuclease R [Streptococcus sanguinis SK408]
Length = 782
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 156/334 (46%), Gaps = 45/334 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R DL + ID ++A +LDDA+ L++G ++ +H+AD + Y++ GS DK+
Sbjct: 247 DLEGRLDLRDEITFTIDGEDAKDLDDAVHIKLLKNGNFELGVHIADVSYYVKEGSELDKE 306
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNS 298
A+ R TSV++ PM PE+L+ SL + +T S ++ D G + ++++ +
Sbjct: 307 ALNRATSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDAKGRVIKHTITQT 364
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTATLE 351
+IK T+ +TY +++ N E+ + K + + +Q R ++GA++ T E
Sbjct: 365 VIKTTFRMTYSDVNDIIAGNQEKAEQFKEIVPSIDSMVQLHEILESMRFKRGALNFDTNE 424
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----- 406
+I V P +N+ + Q A R++ M++ E +A + + NL YR
Sbjct: 425 AKIMVNKEGRP---VNIVLR-QRGIAERMIESFMLVANETVAEHFAKLNLPFIYRIHEEP 480
Query: 407 --GQPQSNID-VSAFAHLPEGPVRS---SAIVKIMRAAAIDFRKPV-------------- 446
+ Q ID S+F G S A+ IM + + V
Sbjct: 481 KAEKVQKFIDYASSFGIRIYGTANSMSQQALQDIMESVKDQPYEDVLSMMLLRSMQQARY 540
Query: 447 ---RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 541 SEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|34541350|ref|NP_905829.1| ribonuclease R [Porphyromonas gingivalis W83]
gi|34397666|gb|AAQ66728.1| ribonuclease R [Porphyromonas gingivalis W83]
Length = 702
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 240 TEEELARREDFRSILTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 300 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 359
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 360 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-KERFQNGAIAFERKEVRFE 418
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 419 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 474
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 475 PDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 533
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI + H L Y FTSPIRRY DL+ H
Sbjct: 534 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVH 567
>gi|421311715|ref|ZP_15762322.1| ribonuclease R [Streptococcus pneumoniae GA58981]
gi|395912293|gb|EJH23156.1| ribonuclease R [Streptococcus pneumoniae GA58981]
Length = 784
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVH 570
>gi|408418469|ref|YP_006759883.1| exoribonuclease II [Desulfobacula toluolica Tol2]
gi|405105682|emb|CCK79179.1| predicted exoribonlease II [Desulfobacula toluolica Tol2]
Length = 659
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 143/295 (48%), Gaps = 20/295 (6%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKDLT L + ID + DDA+S + G + IH+ D YI+ D A +R
Sbjct: 272 RKDLTDLPLITIDGQSTLDFDDAISLENTESG-YTLGIHIIDVDAYIKSDDPIDLAARER 330
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
+S+++P PM P L+ + SL++ E+ ++ + L I +Y + SIIK
Sbjct: 331 ASSIYMPDDKLPMIPPNLSEDLCSLKENEIRPGISTIIKLSRFFEIQDYKIVPSIIKVHK 390
Query: 305 MLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEP 364
++Y +A LN +++ + A LR + RL+ GA E + + E+ +
Sbjct: 391 QMSYSAAN---LLNGKDDPITTLYKIAIRLR-EKRLKAGATQITLPEVNVWI---EENQE 443
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I L + D+ +P+ L+SEMMI +A + S NN+ +R Q Q L +G
Sbjct: 444 IGYLKI-DRENPSRMLISEMMIFANSLMAEFLSANNVPAVFRSQAQPK------QRLFKG 496
Query: 425 PVRSSAIVKIMR----AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ +S I+ M+ + AI +P H LG+ Y TSPIRRY DLL Q+
Sbjct: 497 -IETSLILNFMQRKQLSRAIIGTEPESHSGLGVKAYATATSPIRRYHDLLTQRQI 550
>gi|421280962|ref|ZP_15731760.1| ribonuclease R [Streptococcus pneumoniae GA04672]
gi|395882123|gb|EJG93170.1| ribonuclease R [Streptococcus pneumoniae GA04672]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|338730719|ref|YP_004660111.1| RNAse R [Thermotoga thermarum DSM 5069]
gi|335365070|gb|AEH51015.1| RNAse R [Thermotoga thermarum DSM 5069]
Length = 723
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 153/337 (45%), Gaps = 51/337 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L+ R D T V+ ID ++A + DDA+S +++D + + +H+AD + Y++ GS
Sbjct: 239 TKEDLIGRVDCTDEIVFTIDGEDAKDFDDAVSIKKVKDKYL-LSVHIADVSHYVKEGSAL 297
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A RGTSV+L PMFP KL+ + SL +G++ TV ++++ DG +Y V
Sbjct: 298 DKEAFLRGTSVYLLDTVIPMFPFKLSNDLCSLVEGKIRLTFTVQMLINKDGETLDYKVFP 357
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE----------LKILSEAAALRLQWRLQQGAI-D 346
S IK LTY + +EEA+ L ++ E + + ++R +GAI D
Sbjct: 358 SYIKSKKRLTYTLVNR--YFEGDEEAKKILGKEICRSLDLMLELSQILREYRKARGAILD 415
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ + I+ + V +A+ L+ E MI E +A F+ LP+
Sbjct: 416 IEGGEVKVILGKDYSVVDIVPV-VRGKAEI---LIEEFMIKANETVANI--FHEAGLPFV 469
Query: 407 GQPQSNIDVSAFAHLPE-----------------------------GPVRSSAIVKIMRA 437
+ D L E P+RSS ++R+
Sbjct: 470 YRVHEEPDPETLVQLKEYVEALGIGIKFPKKIDAAFLQKILEAVKNHPLRSSVERLLVRS 529
Query: 438 AAIDFRKPVRHGVLGLP--GYVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 530 MKRALYSATNIGHFGLASFAYTHFTSPIRRYPDLVVH 566
>gi|418146197|ref|ZP_12782979.1| ribonuclease R [Streptococcus pneumoniae GA13637]
gi|353814993|gb|EHD95215.1| ribonuclease R [Streptococcus pneumoniae GA13637]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|323499261|ref|ZP_08104238.1| exoribonuclease II [Vibrio sinaloensis DSM 21326]
gi|323315649|gb|EGA68683.1| exoribonuclease II [Vibrio sinaloensis DSM 21326]
Length = 666
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 116/408 (28%), Positives = 182/408 (44%), Gaps = 55/408 (13%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP-DGKKNWMVYDQ---NGASCSIKPQQVTFVVPGVEKF 166
+KG+ + K+ D V+ + + P G + V A I P VT +
Sbjct: 116 RKGIKSDDLKEGDWVVAHLTRHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I N+ + +D L R D+TH+ ID + ++DDAL A + +G ++ I +AD
Sbjct: 176 EPAGIDNW-EIRDDADLERIDMTHVPFVTIDGESTKDMDDALFAKKKDNGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P S DK A +RG +++LP PM P LA E SL +GE AV SV +
Sbjct: 235 PTAYITPDSEMDKVARQRGFTIYLPGRNIPMLPRDLADELCSLIEGEQRPAVCCSVTISK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNL-------EEEAEL-KILSEAAALRLQ 337
DG IA + + IK L Y+ ++ + EE A++ + L + + R
Sbjct: 295 DGVIADDIQFFAANIKSHARLAYDHVSDWIENGQSDAWQPSEEIAQIVRDLYDFSLARAD 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG----E 390
WR + + + R +++ D ++ ++ D A RLV E MI +C +
Sbjct: 355 WREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANRLVEEAMITANICAGKTLQ 410
Query: 391 AIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG--PVRSSAIVKIMRAAA--------- 439
A G FN A +P+ DV A + PEG P + +I + AA
Sbjct: 411 ASFNSGVFNTHA---GFKPEKIEDVVALVN-PEGELPFTAESIATLEGFAALRRWLASQE 466
Query: 440 ---IDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+D R +P+ H +GL Y +TSPIR+Y D++ H
Sbjct: 467 TSYLDNRIRKSQAYSEIGNQPLPHYAMGLDLYATWTSPIRKYGDMINH 514
>gi|289167819|ref|YP_003446088.1| exoribonuclease R [Streptococcus mitis B6]
gi|288907386|emb|CBJ22223.1| exoribonuclease R [Streptococcus mitis B6]
Length = 783
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 156/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ DG + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKDGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRKRGIAERMIESFMLMANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMR + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|254368793|ref|ZP_04984806.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC022]
gi|157121714|gb|EDO65884.1| ribonuclease R [Francisella tularensis subsp. holarctica FSC022]
Length = 750
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|225621232|ref|YP_002722490.1| exoribonuclease R [Brachyspira hyodysenteriae WA1]
gi|225216052|gb|ACN84786.1| exoribonuclease R [Brachyspira hyodysenteriae WA1]
Length = 580
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 155/323 (47%), Gaps = 42/323 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL +LK ID + + +LDDA S + D KVY+H++D + +IE S D +A
Sbjct: 131 DRVDLRNLKTITIDSESSKDLDDAFSIEK-TDNNYKVYVHISDVSHFIELDSPLDLEARA 189
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L Y MFPE L+ +SL + E A+T +++DG I SV S+I+
Sbjct: 190 RGNSTYLIDKVYNMFPEVLSNNIISLNENEDRFALTFITDINNDGEILSSSVCKSVIRSD 249
Query: 304 YMLTYESATELLHLNLEEEAE----LKILSEAAALR--LQWRLQQG-AIDTATLETRIKV 356
L+Y+ A +L+ +EE++ L+++ A ++ L + ++G ++ + +I +
Sbjct: 250 RKLSYDYAEKLIK---KEESDEDWLLELIDNALNIKNVLYKKRKEGRGVEFENQDIKIVL 306
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCG----EAIATYGS-------------FN 399
+ P I Y E++ + +M ++ E+M+L E +++Y FN
Sbjct: 307 NDEGMP---IEFYAEEKKE-SMAIIEELMLLANSKVAEKLSSYDGVIFRYHGLPDEYRFN 362
Query: 400 NLAL-------PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV---RHG 449
N + + P D+ F +G + ++ ++ + + H
Sbjct: 363 NFKILAHTKGYELKENPDKTYDIKGFIGNVKGKQEENLLIPVLLRSMTPSSYSIVNKSHF 422
Query: 450 VLGLPGYVQFTSPIRRYMDLLAH 472
LGL Y FTSPIRRY DLL H
Sbjct: 423 GLGLDYYTYFTSPIRRYADLLIH 445
>gi|407456436|ref|YP_006735009.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci VS225]
gi|405783697|gb|AFS22444.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci VS225]
Length = 682
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 188 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 521
>gi|418076080|ref|ZP_12713319.1| ribonuclease R [Streptococcus pneumoniae GA47502]
gi|353749869|gb|EHD30512.1| ribonuclease R [Streptococcus pneumoniae GA47502]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY A ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDANDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|387626327|ref|YP_006062502.1| putative exoribonuclease R [Streptococcus pneumoniae INV104]
gi|417693893|ref|ZP_12343082.1| ribonuclease R [Streptococcus pneumoniae GA47901]
gi|444382159|ref|ZP_21180363.1| ribonuclease R [Streptococcus pneumoniae PCS8106]
gi|444384812|ref|ZP_21182903.1| ribonuclease R [Streptococcus pneumoniae PCS8203]
gi|301794112|emb|CBW36518.1| putative exoribonuclease R [Streptococcus pneumoniae INV104]
gi|332204976|gb|EGJ19041.1| ribonuclease R [Streptococcus pneumoniae GA47901]
gi|444251572|gb|ELU58041.1| ribonuclease R [Streptococcus pneumoniae PCS8203]
gi|444253119|gb|ELU59578.1| ribonuclease R [Streptococcus pneumoniae PCS8106]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|418166600|ref|ZP_12803256.1| ribonuclease R [Streptococcus pneumoniae GA17971]
gi|353830196|gb|EHE10326.1| ribonuclease R [Streptococcus pneumoniae GA17971]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|210618048|ref|ZP_03291883.1| hypothetical protein CLONEX_04116 [Clostridium nexile DSM 1787]
gi|210149041|gb|EEA80050.1| hypothetical protein CLONEX_04116 [Clostridium nexile DSM 1787]
Length = 722
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 157/330 (47%), Gaps = 43/330 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R D+ ++ ID ++A +LDDA+S + + K+ +H+AD T Y++ S D++
Sbjct: 243 DMAGRMDIRDWQMVTIDGEDAKDLDDAISLTK-EGENYKLGVHIADVTNYVQEKSALDRE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P L+ SL +GE A++ + ++ G++ +Y + ++I
Sbjct: 302 AYKRGTSVYLVDRVIPMLPHILSNGICSLNEGEDRLALSCIMTINDKGNVVDYKIAETVI 361
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+TY S ++L EEE++ +++ + A + + R ++G+ID ET
Sbjct: 362 CVDRRMTYTSVKKILEEQDEEESKKYEEFVPMFQMMEKVAGILREKRKKRGSIDFDFPET 421
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ + P I L D+ + A +++ + M+L E +A + + + YR Q +
Sbjct: 422 KMVLDEQGKP---IELKPYDR-NVATKIIEDFMLLANETVAEHYFWQEIPFVYRTHEQPD 477
Query: 413 --------IDVSAFA---HLPEGPVRSSAIVKIM-------------RAAAIDFRK---- 444
I ++ F H+ VR I K++ R A ++
Sbjct: 478 EEKIQKLAIFINNFGHSMHIANNAVRPKEIQKLLAKVEGTNEEALISRLALRSMKQAKYT 537
Query: 445 PVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL H
Sbjct: 538 PENTGHFGLATTYYCHFTSPIRRYPDLQIH 567
>gi|406838291|ref|ZP_11097885.1| ribonuclease R 1 [Lactobacillus vini DSM 20605]
Length = 776
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 161/361 (44%), Gaps = 54/361 (14%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q E+ R+DLT K+ ID E+ +LDDA++A +L +G + +H+AD + Y+ PG+
Sbjct: 252 QVTEEEKRGRRDLTQQKLVTIDSIESKDLDDAVTAWKLPNGNFHLGVHIADVSHYVVPGT 311
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D +A KRGTSV+L PM P KL+ SL A++ + ++ G + + +
Sbjct: 312 PLDDEAFKRGTSVYLADRVIPMLPPKLSNGICSLNPQVERLAMSCEMEINPLGQVVRHEI 371
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDT 347
S+IK + +TY++ +L + E+ + + ++E + + R Q+G I+
Sbjct: 372 FPSVIKTSERMTYKAVNNILESHDEKTIKRYQELVSMFETMAELHKVLKKMRRQRGEIEF 431
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
E +I + + P I V Q ++V M+ E +A + F L +P+
Sbjct: 432 EDDEAQIILDSKGHPVDI----VLRQRGIGEKMVESFMLAANETVAAH--FRKLNVPFIY 485
Query: 406 --RGQPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
P+ +S F L PE + S+ +++
Sbjct: 486 RIHENPKPEKMMSFFEALSSIGIQVKGSLKDIRPKMLQGIIKKVAGQPEETMVSTMLLRS 545
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV------GLQAAAWVSVGAQ 488
M+ A +P+ H L Y FTSPIRRY DLL H + G+ AA V Q
Sbjct: 546 MQQAKY-APEPLGHFGLAAADYTHFTSPIRRYPDLLVHRLIRHYSENGINEAAQAEVKDQ 604
Query: 489 I 489
I
Sbjct: 605 I 605
>gi|407460416|ref|YP_006738191.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci WC]
gi|405786793|gb|AFS25537.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci WC]
Length = 681
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|365903524|ref|ZP_09441347.1| ribonuclease R [Lactobacillus malefermentans KCTC 3548]
Length = 781
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 162/336 (48%), Gaps = 48/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+D+T K+ ID + + +LDDA++A +L +G + +H+AD + Y++ GSL
Sbjct: 249 TEEEMAGREDITDQKLVTIDGESSKDLDDAVTAWKLPNGNFHLGVHIADVSHYVKEGSLL 308
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A KRGTSV+L PM P +L+ SL +G + ++ + + +G++ ++ +
Sbjct: 309 DQEAFKRGTSVYLTDRVIPMLPRRLSNGICSLNEGVLRLCMSCEMEIDQEGNVIKHRIHP 368
Query: 298 SIIKPTYMLTYESATELLHLN----LEEEAELKILSEAAA----LRLQWRLQQGAIDTAT 349
S++K T +TY + ++L + +E AEL + E + + R ++GAID
Sbjct: 369 SVMKSTARMTYTAVNQILEAHDDKTRDEYAELVPMFETMGALHKILYKHRKRRGAIDFDD 428
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YRG 407
E I + + + I L V A+ R++ M+ E +A +++ P YR
Sbjct: 429 REAEI-IVDEKGHAVDIKLRVRGLAE---RMIESFMLAANETVAQ--NYDQAKAPFIYRV 482
Query: 408 QPQSNID--------VSAF--------AHL---------------PEGPVRSSAIVKIMR 436
+ D ++AF AHL PE V S +++ ++
Sbjct: 483 HETPDADRIKSFFEFLTAFGVNVKGDPAHLRPKTMQGILKQVAGKPEEAVVSVMMLRSLK 542
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + + H LG Y FTSPIRRY D + H
Sbjct: 543 QARYT-DQSLGHFGLGADFYTHFTSPIRRYPDTMVH 577
>gi|418112329|ref|ZP_12749331.1| ribonuclease R [Streptococcus pneumoniae GA41538]
gi|353784195|gb|EHD64616.1| ribonuclease R [Streptococcus pneumoniae GA41538]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQACYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|221231737|ref|YP_002510889.1| exoribonuclease R [Streptococcus pneumoniae ATCC 700669]
gi|415698181|ref|ZP_11457092.1| ribonuclease R [Streptococcus pneumoniae 459-5]
gi|415749376|ref|ZP_11477320.1| ribonuclease R [Streptococcus pneumoniae SV35]
gi|415752060|ref|ZP_11479171.1| ribonuclease R [Streptococcus pneumoniae SV36]
gi|418105035|ref|ZP_12742094.1| ribonuclease R [Streptococcus pneumoniae GA44500]
gi|418123247|ref|ZP_12760181.1| ribonuclease R [Streptococcus pneumoniae GA44378]
gi|418127833|ref|ZP_12764729.1| ribonuclease R [Streptococcus pneumoniae NP170]
gi|418137009|ref|ZP_12773851.1| ribonuclease R [Streptococcus pneumoniae GA11663]
gi|418178006|ref|ZP_12814590.1| ribonuclease R [Streptococcus pneumoniae GA41565]
gi|418182603|ref|ZP_12819164.1| ribonuclease R [Streptococcus pneumoniae GA43380]
gi|419473038|ref|ZP_14012889.1| ribonuclease R [Streptococcus pneumoniae GA13430]
gi|220674197|emb|CAR68725.1| putative exoribonuclease R [Streptococcus pneumoniae ATCC 700669]
gi|353778105|gb|EHD58575.1| ribonuclease R [Streptococcus pneumoniae GA44500]
gi|353797334|gb|EHD77669.1| ribonuclease R [Streptococcus pneumoniae GA44378]
gi|353800294|gb|EHD80608.1| ribonuclease R [Streptococcus pneumoniae NP170]
gi|353844780|gb|EHE24823.1| ribonuclease R [Streptococcus pneumoniae GA41565]
gi|353850840|gb|EHE30844.1| ribonuclease R [Streptococcus pneumoniae GA43380]
gi|353901636|gb|EHE77168.1| ribonuclease R [Streptococcus pneumoniae GA11663]
gi|379552545|gb|EHZ17634.1| ribonuclease R [Streptococcus pneumoniae GA13430]
gi|381309756|gb|EIC50589.1| ribonuclease R [Streptococcus pneumoniae SV36]
gi|381317186|gb|EIC57916.1| ribonuclease R [Streptococcus pneumoniae 459-5]
gi|381317670|gb|EIC58395.1| ribonuclease R [Streptococcus pneumoniae SV35]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|419503786|ref|ZP_14043455.1| ribonuclease R [Streptococcus pneumoniae GA47760]
gi|379606463|gb|EHZ71210.1| ribonuclease R [Streptococcus pneumoniae GA47760]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|418189209|ref|ZP_12825724.1| ribonuclease R [Streptococcus pneumoniae GA47373]
gi|353856351|gb|EHE36320.1| ribonuclease R [Streptococcus pneumoniae GA47373]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAANYYTHFTSPIRRYPDLLVH 570
>gi|221195423|ref|ZP_03568478.1| ribonuclease R [Atopobium rimae ATCC 49626]
gi|221184610|gb|EEE17002.1| ribonuclease R [Atopobium rimae ATCC 49626]
Length = 698
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 51/336 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL ID +A + DDA+ A RL DG ++ +H+AD ++Y+ GS D +A
Sbjct: 203 SRVDLRGEFCVTIDPSDAKDFDDAVGARRLSDGGYELDVHIADVSRYVSWGSSIDLEARA 262
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R SV+L PM PE L + SLR E V+V + L+++G I N++I+
Sbjct: 263 RTCSVYLVDRVLPMLPEWLCNDLCSLRPHEDRLTVSVRMRLNAEGVICSVQAMNAVIRSA 322
Query: 304 YMLTYESATELLHLNLEEEAE--------------LKILSEAAALRLQWRLQQGAIDTAT 349
L+YE LL + +++ L+ L E A R + R ++GAID T
Sbjct: 323 ARLSYEQVDALLEGKMSQDSPVMGDTTQQSALVRMLETLDEIRAKRQKIRYKRGAIDFET 382
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
+ETR+ + P + + A L+ E M+L E++A + ++ YR
Sbjct: 383 VETRMLLDVEGRPTGV----SVRRRTRATNLIEEAMLLANESVAKMLADKDIKTAYRVHE 438
Query: 407 -GQPQS------------NIDVSAFAHLPEG----------PVRSSAIVKIMRAAAIDFR 443
P++ ++ A + G R + +++ A + +
Sbjct: 439 SPSPEALHAGLSVLVAIGALETGEAARITTGDSCAICGALEKSRGTGYTRVVNAVLLRAQ 498
Query: 444 K-----PVRHG--VLGLPGYVQFTSPIRRYMDLLAH 472
K PV G LG Y FTSPIRRY D+L H
Sbjct: 499 KRAIYLPVNQGHYALGASAYCHFTSPIRRYSDILVH 534
>gi|168494405|ref|ZP_02718548.1| ribonuclease R [Streptococcus pneumoniae CDC3059-06]
gi|418073757|ref|ZP_12711015.1| ribonuclease R [Streptococcus pneumoniae GA11184]
gi|418078466|ref|ZP_12715689.1| ribonuclease R [Streptococcus pneumoniae 4027-06]
gi|418080431|ref|ZP_12717643.1| ribonuclease R [Streptococcus pneumoniae 6735-05]
gi|418098346|ref|ZP_12735445.1| ribonuclease R [Streptococcus pneumoniae 6901-05]
gi|418114472|ref|ZP_12751462.1| ribonuclease R [Streptococcus pneumoniae 5787-06]
gi|418116713|ref|ZP_12753684.1| ribonuclease R [Streptococcus pneumoniae 6963-05]
gi|418135035|ref|ZP_12771892.1| ribonuclease R [Streptococcus pneumoniae GA11426]
gi|419431373|ref|ZP_13971518.1| ribonuclease R [Streptococcus pneumoniae EU-NP05]
gi|419433566|ref|ZP_13973684.1| ribonuclease R [Streptococcus pneumoniae GA40183]
gi|419440193|ref|ZP_13980245.1| ribonuclease R [Streptococcus pneumoniae GA40410]
gi|419464385|ref|ZP_14004278.1| ribonuclease R [Streptococcus pneumoniae GA04175]
gi|419468842|ref|ZP_14008713.1| ribonuclease R [Streptococcus pneumoniae GA06083]
gi|419497157|ref|ZP_14036867.1| ribonuclease R [Streptococcus pneumoniae GA47522]
gi|419534440|ref|ZP_14073943.1| ribonuclease R [Streptococcus pneumoniae GA17457]
gi|421309412|ref|ZP_15760039.1| ribonuclease R [Streptococcus pneumoniae GA62681]
gi|183575704|gb|EDT96232.1| ribonuclease R [Streptococcus pneumoniae CDC3059-06]
gi|353747657|gb|EHD28313.1| ribonuclease R [Streptococcus pneumoniae 4027-06]
gi|353750604|gb|EHD31242.1| ribonuclease R [Streptococcus pneumoniae GA11184]
gi|353752971|gb|EHD33595.1| ribonuclease R [Streptococcus pneumoniae 6735-05]
gi|353769706|gb|EHD50222.1| ribonuclease R [Streptococcus pneumoniae 6901-05]
gi|353787214|gb|EHD67621.1| ribonuclease R [Streptococcus pneumoniae 5787-06]
gi|353789690|gb|EHD70082.1| ribonuclease R [Streptococcus pneumoniae 6963-05]
gi|353902272|gb|EHE77802.1| ribonuclease R [Streptococcus pneumoniae GA11426]
gi|379539604|gb|EHZ04783.1| ribonuclease R [Streptococcus pneumoniae GA04175]
gi|379546945|gb|EHZ12083.1| ribonuclease R [Streptococcus pneumoniae GA06083]
gi|379565174|gb|EHZ30167.1| ribonuclease R [Streptococcus pneumoniae GA17457]
gi|379576567|gb|EHZ41491.1| ribonuclease R [Streptococcus pneumoniae GA40183]
gi|379579960|gb|EHZ44856.1| ribonuclease R [Streptococcus pneumoniae GA40410]
gi|379601150|gb|EHZ65926.1| ribonuclease R [Streptococcus pneumoniae GA47522]
gi|379630739|gb|EHZ95320.1| ribonuclease R [Streptococcus pneumoniae EU-NP05]
gi|395910833|gb|EJH21702.1| ribonuclease R [Streptococcus pneumoniae GA62681]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|451948993|ref|YP_007469588.1| exoribonuclease R [Desulfocapsa sulfexigens DSM 10523]
gi|451908341|gb|AGF79935.1| exoribonuclease R [Desulfocapsa sulfexigens DSM 10523]
Length = 668
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 139/312 (44%), Gaps = 28/312 (8%)
Query: 174 FLQKAEDNLLN---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
LQ+ D L RKD T LK ID + DDAL+ +G + V +H++D Y
Sbjct: 263 LLQQGVDKLFQDPARKDFTDLKPITIDGSTTLDFDDALTVEAQDNGNVLVGVHISDVAHY 322
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
+ P +AM+RGTS++ P PM P L+ SL QGE A++ ++L + +
Sbjct: 323 VRPEDPLFLEAMQRGTSIYFPEGQIPMLPRHLSQGICSLIQGEFRAAMSFMILLSDEAEV 382
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ SIIK LTY+ A + ++ + EL IL++ RL GA+
Sbjct: 383 LRIRIYPSIIKVARRLTYDEADTM----IKTDPELAILNDLRIKLRNRRLDAGALLLPFP 438
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------GSFNNLAL 403
+ I V + + + + D P+ LVSEMMIL A Y G F
Sbjct: 439 DVNIHVHDGSK----VQVSLADTDTPSRTLVSEMMILANTQAARYVADRMAPGLFRAQK- 493
Query: 404 PYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPI 463
P R + S +D F + S + R + +P H LG+ Y TSPI
Sbjct: 494 PPRRRVVSGLDNDLF-------LNSMQRKMLSRGELLINAQP--HSGLGVTQYTTITSPI 544
Query: 464 RRYMDLLAHYQV 475
RR +DL+ +Q+
Sbjct: 545 RRLLDLVMQHQL 556
>gi|148988420|ref|ZP_01819867.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP6-BS73]
gi|149010378|ref|ZP_01831749.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|168491065|ref|ZP_02715208.1| ribonuclease R [Streptococcus pneumoniae CDC0288-04]
gi|303254442|ref|ZP_07340548.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae BS455]
gi|303259888|ref|ZP_07345863.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP-BS293]
gi|303262302|ref|ZP_07348246.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP14-BS292]
gi|303264724|ref|ZP_07350642.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS397]
gi|303267331|ref|ZP_07353191.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS457]
gi|303269136|ref|ZP_07354915.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS458]
gi|387759228|ref|YP_006066206.1| putative exoribonuclease R [Streptococcus pneumoniae INV200]
gi|417686410|ref|ZP_12335688.1| ribonuclease R [Streptococcus pneumoniae GA41301]
gi|418139323|ref|ZP_12776153.1| ribonuclease R [Streptococcus pneumoniae GA13338]
gi|418180432|ref|ZP_12817003.1| ribonuclease R [Streptococcus pneumoniae GA41688]
gi|418193603|ref|ZP_12830095.1| ribonuclease R [Streptococcus pneumoniae GA47439]
gi|418200396|ref|ZP_12836841.1| ribonuclease R [Streptococcus pneumoniae GA47976]
gi|419514528|ref|ZP_14054155.1| ribonuclease R [Streptococcus pneumoniae England14-9]
gi|419520903|ref|ZP_14060499.1| ribonuclease R [Streptococcus pneumoniae GA05245]
gi|421268178|ref|ZP_15719049.1| ribonuclease R [Streptococcus pneumoniae SPAR95]
gi|421296032|ref|ZP_15746744.1| ribonuclease R [Streptococcus pneumoniae GA58581]
gi|147764859|gb|EDK71788.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|147926101|gb|EDK77175.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP6-BS73]
gi|183574749|gb|EDT95277.1| ribonuclease R [Streptococcus pneumoniae CDC0288-04]
gi|301801817|emb|CBW34528.1| putative exoribonuclease R [Streptococcus pneumoniae INV200]
gi|302598609|gb|EFL65649.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae BS455]
gi|302636625|gb|EFL67116.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP14-BS292]
gi|302639093|gb|EFL69553.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
SP-BS293]
gi|302641323|gb|EFL71691.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS458]
gi|302643141|gb|EFL73428.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS457]
gi|302645811|gb|EFL76040.1| exoribonuclease, VacB/Rnb family protein [Streptococcus pneumoniae
BS397]
gi|332076247|gb|EGI86713.1| ribonuclease R [Streptococcus pneumoniae GA41301]
gi|353846044|gb|EHE26082.1| ribonuclease R [Streptococcus pneumoniae GA41688]
gi|353859583|gb|EHE39533.1| ribonuclease R [Streptococcus pneumoniae GA47439]
gi|353865443|gb|EHE45352.1| ribonuclease R [Streptococcus pneumoniae GA47976]
gi|353905566|gb|EHE80989.1| ribonuclease R [Streptococcus pneumoniae GA13338]
gi|379539917|gb|EHZ05094.1| ribonuclease R [Streptococcus pneumoniae GA05245]
gi|379637624|gb|EIA02177.1| ribonuclease R [Streptococcus pneumoniae England14-9]
gi|395871094|gb|EJG82205.1| ribonuclease R [Streptococcus pneumoniae SPAR95]
gi|395897245|gb|EJH08209.1| ribonuclease R [Streptococcus pneumoniae GA58581]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|428170949|gb|EKX39870.1| hypothetical protein GUITHDRAFT_114119 [Guillardia theta CCMP2712]
Length = 791
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 143/306 (46%), Gaps = 30/306 (9%)
Query: 195 AIDVDEADE---LDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLP 251
A VD++ E +DDA+ +G V IHVADP + + DK A++R ++V+LP
Sbjct: 371 AFAVDDSTENMDIDDAVGLQYEGEGEW-VLIHVADPARLCLQDTDLDKLALERASTVYLP 429
Query: 252 TATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESA 311
PM P+ L SL + + +T +V L G I EY + S + TY
Sbjct: 430 ETRIPMLPQTLT-RSASLAEQRDNDGLTFAVRLGHSGDIEEYRIVPSRVINVKKATYSQV 488
Query: 312 TELLHLNLE---EEAE-------------LKILSEAAALRLQWRLQQGAIDTATLETRI- 354
ELL N E EE E L+ L A R+ +R+ QGA+ T + ++
Sbjct: 489 DELLTWNPEAALEEREGRGDAEQVKSSFILQRLMTLAKRRMSFRMLQGALSTQIPKAQVT 548
Query: 355 ---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-PQ 410
++ N E + + + + Q P+ +++E M+L GE A + + YR Q P
Sbjct: 549 VWDEIVNGEKRKEV-KVEISSQT-PSRMMIAEFMLLAGEVAARFAHERGIPFVYRTQLPV 606
Query: 411 SNI-DVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDL 469
+ D H R+ V +M+ A ++ P RH LGL Y Q TSPIRRYMDL
Sbjct: 607 LKVPDFPDLDHFRNEACRNFQQVLMMKPA-VNLVMPARHNGLGLSLYSQITSPIRRYMDL 665
Query: 470 LAHYQV 475
L H Q+
Sbjct: 666 LLHRQL 671
>gi|300857052|ref|YP_003782036.1| ribonuclease R [Clostridium ljungdahlii DSM 13528]
gi|300437167|gb|ADK16934.1| predicted ribonuclease R [Clostridium ljungdahlii DSM 13528]
Length = 712
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 147/329 (44%), Gaps = 49/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL +L ID ++A +LDDA+S +L +G + +H+AD + Y+ + DK+A+KR
Sbjct: 244 RTDLRNLLTVTIDGEDAKDLDDAISISKLPNGNYSLGVHIADVSNYVREKNPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P+KL+ SL A++ + + G + ++ V S+IK
Sbjct: 304 GTSVYLIDRVIPMLPKKLSNGICSLNPNTDRLALSCLMEIDKTGKVVQHKVVESVIKSNE 363
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L E E ++ E + + R+ +GAID E +I +
Sbjct: 364 RMTYTDVTKILRDKDAETMEKYSYLVDTFNLMEELCKILNKRRMTRGAIDFDFQECKIIL 423
Query: 357 AN---PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN- 412
+ P EP + + R++ E M++C E IA + + NL YR +
Sbjct: 424 DDLGVPVKIEPY-------ERGISNRIIEEFMLVCNETIAEHMFWTNLPFVYRIHEDPDE 476
Query: 413 ---IDVSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDFR 443
+ + F H E V S+ +++ M+ A
Sbjct: 477 EKLMHFNEFVHNLGYVIKWGQEVHPKALQDIIEKVKGKKEEIVVSTLLLRSMKQARYS-S 535
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ V H L Y FTSPIRRY DL+ H
Sbjct: 536 ECVGHFGLAARYYCHFTSPIRRYPDLIIH 564
>gi|42526879|ref|NP_971977.1| RNB-like [Treponema denticola ATCC 35405]
gi|449112059|ref|ZP_21748614.1| hypothetical protein HMPREF9735_01663 [Treponema denticola ATCC
33521]
gi|449113137|ref|ZP_21749652.1| hypothetical protein HMPREF9721_00170 [Treponema denticola ATCC
35404]
gi|41817194|gb|AAS11888.1| RNB-like family protein [Treponema denticola ATCC 35405]
gi|448956340|gb|EMB37101.1| hypothetical protein HMPREF9735_01663 [Treponema denticola ATCC
33521]
gi|448960717|gb|EMB41426.1| hypothetical protein HMPREF9721_00170 [Treponema denticola ATCC
35404]
Length = 623
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 139/291 (47%), Gaps = 21/291 (7%)
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
+DLTHL YAID + + + DDA+ DG ++IH+A+P I P S SD DA KRG
Sbjct: 244 EDLTHLTSYAIDNEGSTDPDDAVCF----DGE-NLWIHIANPADIITPDSKSDMDARKRG 298
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYM 305
++++P M E A++ +L + A++ + L+ I + + + IK + +
Sbjct: 299 ATLYIPEGVSRMLGES-AVDAFALGLHDDSYALSFKLKLNDSAEILDVDILRTKIKVSCI 357
Query: 306 LTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANP-EDPEP 364
++ E ++ NL K L E A + R GA+ E +IKV E+ +
Sbjct: 358 SFEKADEEKMNTNL------KHLFEIAEKNRKKREAAGAVSIDMPEVQIKVETENENQKV 411
Query: 365 IINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEG 424
I+ Y + ++ EMM+L GEA A + NN+ Y Q + LPEG
Sbjct: 412 FISPY---NFTESFLMIKEMMLLAGEAAARFAFKNNIPFQYVSQEAPELP----KKLPEG 464
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K MR + P H LG+ Y Q TSP+RRY DL+AH Q+
Sbjct: 465 LAGEYRKRKAMRPRNVG-TIPAMHSALGIAMYSQITSPLRRYGDLVAHQQL 514
>gi|418121042|ref|ZP_12757988.1| ribonuclease R [Streptococcus pneumoniae GA44194]
gi|353793869|gb|EHD74228.1| ribonuclease R [Streptococcus pneumoniae GA44194]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|259502761|ref|ZP_05745663.1| ribonuclease R [Lactobacillus antri DSM 16041]
gi|259169264|gb|EEW53759.1| ribonuclease R [Lactobacillus antri DSM 16041]
Length = 786
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+T+ + ID E+ +LDDA+ A ++ +G + +H+AD + Y++PG+ DK+A KR
Sbjct: 257 RKDITNQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL GE A++ + + G + ++ + S++K
Sbjct: 317 GTSVYLTDRVVPMLPKRLSNGICSLNPGEERLAMSCEMEIDEQGRVVKHRIFPSVMKSHA 376
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ +L + ++ + + + E + L+ R ++GAID E +I V
Sbjct: 377 RMTYKAVNRILEAHDQKTIDQYKDLVPMFETMGELHKILLKSRKRRGAIDFEAPEAKIIV 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-- 414
+ P I++ + D+ A R++ M+ E +A + ++ YR + D
Sbjct: 437 DDKGHP---IDIQLRDRG-LAERMIESFMLAANETVAEHYFNEHVPFLYRIHETPDKDRV 492
Query: 415 ------VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKP-------------------- 445
+S F H V+ + K+++ A KP
Sbjct: 493 KSFVDFLSVFGIDVHGDINNVKPKMLQKVLKDVA---GKPEEQMVQVMMLRSMQQAKYSD 549
Query: 446 --VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 550 EELGHFGLGAKYYTHFTSPIRRYPDDTVH 578
>gi|15902922|ref|NP_358472.1| exoribonuclease R [Streptococcus pneumoniae R6]
gi|116515936|ref|YP_816344.1| ribonuclease R [Streptococcus pneumoniae D39]
gi|421265998|ref|ZP_15716881.1| ribonuclease R [Streptococcus pneumoniae SPAR27]
gi|15458483|gb|AAK99682.1| Exoribonuclease R [Streptococcus pneumoniae R6]
gi|116076512|gb|ABJ54232.1| ribonuclease R [Streptococcus pneumoniae D39]
gi|242266981|gb|ACS91342.1| RNase R [Streptococcus pneumoniae]
gi|395868734|gb|EJG79851.1| ribonuclease R [Streptococcus pneumoniae SPAR27]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|148998588|ref|ZP_01826028.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|168575638|ref|ZP_02721574.1| ribonuclease R [Streptococcus pneumoniae MLV-016]
gi|307067633|ref|YP_003876599.1| exoribonuclease R [Streptococcus pneumoniae AP200]
gi|419470928|ref|ZP_14010787.1| ribonuclease R [Streptococcus pneumoniae GA07914]
gi|421238606|ref|ZP_15695174.1| ribonuclease R [Streptococcus pneumoniae 2071247]
gi|421244795|ref|ZP_15701296.1| ribonuclease R [Streptococcus pneumoniae 2081685]
gi|421314141|ref|ZP_15764731.1| ribonuclease R [Streptococcus pneumoniae GA47562]
gi|147755586|gb|EDK62633.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|183578474|gb|EDT99002.1| ribonuclease R [Streptococcus pneumoniae MLV-016]
gi|306409170|gb|ADM84597.1| Exoribonuclease R [Streptococcus pneumoniae AP200]
gi|379545644|gb|EHZ10783.1| ribonuclease R [Streptococcus pneumoniae GA07914]
gi|395602086|gb|EJG62230.1| ribonuclease R [Streptococcus pneumoniae 2071247]
gi|395609295|gb|EJG69382.1| ribonuclease R [Streptococcus pneumoniae 2081685]
gi|395914641|gb|EJH25485.1| ribonuclease R [Streptococcus pneumoniae GA47562]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|410667074|ref|YP_006919445.1| ribonuclease R [Thermacetogenium phaeum DSM 12270]
gi|409104821|gb|AFV10946.1| ribonuclease R [Thermacetogenium phaeum DSM 12270]
Length = 725
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 157/327 (48%), Gaps = 43/327 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DL L + ID ++A +LDDA+S RL D ++ +H+AD + Y++ S DK+A +
Sbjct: 257 GRWDLRELPMVTIDGEDAKDLDDAVSLERLPDNNYRLGVHIADVSYYVKENSELDKEAFR 316
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P +L+ SL GE A++V + ++++G++ Y + S+I+
Sbjct: 317 RGTSVYLVDRVIPMLPARLSNGICSLNAGEDRLAISVFMEINAEGNVVRYEIGPSVIRVD 376
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + +L ++ E + + + E + + R +GA+D E+ K
Sbjct: 377 ERMTYTNVRRILEEDVPELYQRYSSFVKTFQEMKELCLILRRRRRLRGALDFDFPES--K 434
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
V E+ P+ L +E A +++ E M++ E +A + + + L YR + +
Sbjct: 435 VTLDEEGRPVDVLLMEQSI--ANQIIEEFMLIANETVARHLTKMEVPLLYRVHEEPKAEK 492
Query: 415 ---VSAFAH--------------------------LPEGPVRSSAIVKIMRAAAIDFRKP 445
++ F H PE V + +++ ++ A D KP
Sbjct: 493 LNALNEFLHGFGFHIPSANGVHPRFFQEILHKVEDRPERLVVQTVMLRSLQHARYD-PKP 551
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L + Y FTSPIRRY DL+ H
Sbjct: 552 LGHFGLAVRYYTHFTSPIRRYPDLIVH 578
>gi|373855819|ref|ZP_09598565.1| ribonuclease R [Bacillus sp. 1NLA3E]
gi|372454888|gb|EHP28353.1| ribonuclease R [Bacillus sp. 1NLA3E]
Length = 776
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 149/335 (44%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + NR+DL + + ID +A +LDDA+ +L++G K+ +H+AD T Y+ GS D
Sbjct: 243 ESEIANRRDLRNEVIVTIDGADAKDLDDAVQVSKLENGHYKLGVHIADVTYYVTEGSPID 302
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+A RGTSV+L PM P +L+ SL ++ ++ + DG + + + S
Sbjct: 303 LEARDRGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCTMEITPDGEVVHHEIFQS 362
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L EE + + + E A + + R+ +GAID
Sbjct: 363 VIKTTERMTYSDVNKILTDKDEELLKRYEPLVPMFETMEELAEVLRKKRMHRGAIDFDFK 422
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V P + V + A +L+ E M+ E +A + + + YR
Sbjct: 423 EAKVLVDEEGKPTDV----VLRERSVAEKLIEEFMLAANETVAEHFHWLEVPFIYRIHED 478
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 479 PKEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVRGKPEEMVISTVMLRSMQQAK 538
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 539 YD---PESLGHFGLSTEFYTHFTSPIRRYPDLIVH 570
>gi|417312544|ref|ZP_12099256.1| ribonuclease R [Streptococcus pneumoniae GA04375]
gi|418227554|ref|ZP_12854173.1| ribonuclease R [Streptococcus pneumoniae 3063-00]
gi|419438072|ref|ZP_13978142.1| ribonuclease R [Streptococcus pneumoniae GA13499]
gi|327389252|gb|EGE87597.1| ribonuclease R [Streptococcus pneumoniae GA04375]
gi|353883155|gb|EHE62964.1| ribonuclease R [Streptococcus pneumoniae 3063-00]
gi|379538077|gb|EHZ03258.1| ribonuclease R [Streptococcus pneumoniae GA13499]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|56708581|ref|YP_170477.1| ribonuclease R [Francisella tularensis subsp. tularensis SCHU S4]
gi|110671052|ref|YP_667609.1| ribonuclease R [Francisella tularensis subsp. tularensis FSC198]
gi|254371210|ref|ZP_04987212.1| hypothetical protein FTBG_00979 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875443|ref|ZP_05248153.1| ribonuclease R [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717811|ref|YP_005306147.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726414|ref|YP_005318600.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TI0902]
gi|385795274|ref|YP_005831680.1| Ribonuclease R [Francisella tularensis subsp. tularensis NE061598]
gi|421756214|ref|ZP_16193137.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700075]
gi|56605073|emb|CAG46186.1| Ribonuclease R [Francisella tularensis subsp. tularensis SCHU S4]
gi|110321385|emb|CAL09569.1| Ribonuclease R [Francisella tularensis subsp. tularensis FSC198]
gi|151569450|gb|EDN35104.1| hypothetical protein FTBG_00979 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841442|gb|EET19878.1| ribonuclease R [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159809|gb|ADA79200.1| Ribonuclease R [Francisella tularensis subsp. tularensis NE061598]
gi|377827863|gb|AFB81111.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TI0902]
gi|377829488|gb|AFB79567.1| 3'-to-5' exoribonuclease RNase R [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085304|gb|EKM85449.1| ribonuclease R [Francisella tularensis subsp. tularensis 80700075]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D AH G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|417886802|ref|ZP_12530946.1| ribonuclease R [Lactobacillus oris F0423]
gi|341593193|gb|EGS36050.1| ribonuclease R [Lactobacillus oris F0423]
Length = 786
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 48/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD+T+ + ID E+ +LDDA+ A ++ +G + +H+AD + Y++PG+ DK+A KR
Sbjct: 257 RKDITNQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVSHYVQPGTPLDKEAFKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL GE A++ + + G + ++ + S++K
Sbjct: 317 GTSVYLTDRVVPMLPKRLSNGICSLSPGEERLAMSCEMEIDEQGRVVKHRIFPSVMKSHA 376
Query: 305 MLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ +L + ++ + + + E + L+ R ++GAID E +I V
Sbjct: 377 RMTYKAVNRILEAHDQKTMDQYKDLVPMFETMGELHKILLKSRKRRGAIDFEAPEAKIIV 436
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
+ P I++ + D+ A R++ M+ E +A + ++ YR + D V
Sbjct: 437 DDKGHP---IDIQLRDRG-LAERMIESFMLAANETVAEHYFNEHVPFLYRIHETPDKDRV 492
Query: 416 SAF----------AHLPEGPVRSSAIVKIMRAAAIDFRKP-------------------- 445
+F H V+ + K+++ A KP
Sbjct: 493 KSFVDFLNVFGIDVHGDINNVKPKMLQKVLKDVA---GKPEEQMVQVMMLRSMQQAKYSD 549
Query: 446 --VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 550 EELGHFGLGAKYYTHFTSPIRRYPDDTVH 578
>gi|451821905|ref|YP_007458106.1| ribonuclease R [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451787884|gb|AGF58852.1| ribonuclease R [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 763
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 149/327 (45%), Gaps = 45/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL L++ ID ++A +LDDA+S +L +G K+ +H+AD + Y+ + DK+A+KR
Sbjct: 286 RRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNYKLGVHIADVSHYVRENNPLDKEALKR 345
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L PM P KL+ SL A+T + +++ G + + + SIIK
Sbjct: 346 ATSVYLIDRVIPMLPRKLSNGICSLNPRVDRLALTCFMEINNSGKVVNHEIVESIIKTNE 405
Query: 305 MLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY T++L + EE + K++ E + + R ++GAID E +I +
Sbjct: 406 RMTYTDVTKILKDHDEELIKRYDYLYEDFKLMEELCNILREKRTRRGAIDFEIAEAKITL 465
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS 416
+ P I + D+ + A R++ E M++ E +A + + +L YR N D
Sbjct: 466 NDLGKP---IEIKPYDR-EIANRVIEEFMLVANETVAEHMFWTHLPFVYR--IHENPDEE 519
Query: 417 AFAHLPE----------------------------GPVRSSAIVKIMRAAAIDFR-KPVR 447
A E G + + ++ + + R P
Sbjct: 520 KLAKFKEFVYNLGYNVHWTEEIIPKSFQEILEKVKGKNEETVVSTLLLRSMMQARYAPEC 579
Query: 448 HGVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL H
Sbjct: 580 TGHFGLAAQYYCHFTSPIRRYPDLQIH 606
>gi|182683920|ref|YP_001835667.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae CGSP14]
gi|182629254|gb|ACB90202.1| exoribonuclease, VacB/Rnb family [Streptococcus pneumoniae CGSP14]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|409199123|ref|ZP_11227786.1| RNAse r [Marinilabilia salmonicolor JCM 21150]
Length = 720
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 146/333 (43%), Gaps = 51/333 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L++G +V +H+AD T Y+ P ++ DK+A+ R
Sbjct: 259 RRDFRKVTTFTIDPADAKDFDDALSVQKLKNGHWEVGVHIADVTHYVTPDTILDKEAVSR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV+L PM PE+L+ E SLR E + + S V D G + + V ++I
Sbjct: 319 ATSVYLVDRVVPMLPERLSNELCSLRPNE--DKLCFSAVFEMDDQGVVFDSWVGRTVIHS 376
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRIKVANPED 361
+YE A ++ E E + A +L+ R +GAID +E + ++
Sbjct: 377 DRRFSYEEAQSVIEKGEGELKEEILTLNDLAQKLRSIRFSKGAIDFERVEVKFELDEKGK 436
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIA---------------------------- 393
P +N++ + +A A +L+ E M+L +A
Sbjct: 437 P---LNVFFK-EAKEANKLIEEFMLLANRRVAEIIGRNELTPENKRSSKNSKTFVYRIHD 492
Query: 394 -----TYGSFNNLA--LPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKP- 445
Y SF+ + P+ + +S+ + G V+ I+ AI
Sbjct: 493 EPDPEKYESFSKFVRKFGFEAAPKQSETISSSLNRVLGEVQGKKQQNIVETLAIRTMSKA 552
Query: 446 ------VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D++ H
Sbjct: 553 VYSTHNIGHYGLGFKHYTHFTSPIRRYPDMMVH 585
>gi|225854479|ref|YP_002735991.1| ribonuclease R [Streptococcus pneumoniae JJA]
gi|418130137|ref|ZP_12767021.1| ribonuclease R [Streptococcus pneumoniae GA07643]
gi|418186983|ref|ZP_12823512.1| ribonuclease R [Streptococcus pneumoniae GA47360]
gi|418229719|ref|ZP_12856325.1| ribonuclease R [Streptococcus pneumoniae EU-NP01]
gi|419477638|ref|ZP_14017463.1| ribonuclease R [Streptococcus pneumoniae GA18068]
gi|421242921|ref|ZP_15699442.1| ribonuclease R [Streptococcus pneumoniae 2081074]
gi|421270565|ref|ZP_15721421.1| ribonuclease R [Streptococcus pneumoniae SPAR48]
gi|225723306|gb|ACO19159.1| ribonuclease R [Streptococcus pneumoniae JJA]
gi|353803429|gb|EHD83721.1| ribonuclease R [Streptococcus pneumoniae GA07643]
gi|353852808|gb|EHE32794.1| ribonuclease R [Streptococcus pneumoniae GA47360]
gi|353889625|gb|EHE69395.1| ribonuclease R [Streptococcus pneumoniae EU-NP01]
gi|379567020|gb|EHZ32007.1| ribonuclease R [Streptococcus pneumoniae GA18068]
gi|395609620|gb|EJG69706.1| ribonuclease R [Streptococcus pneumoniae 2081074]
gi|395868360|gb|EJG79478.1| ribonuclease R [Streptococcus pneumoniae SPAR48]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|418173345|ref|ZP_12809959.1| ribonuclease R [Streptococcus pneumoniae GA41277]
gi|418216424|ref|ZP_12843148.1| ribonuclease R [Streptococcus pneumoniae Netherlands15B-37]
gi|353840044|gb|EHE20118.1| ribonuclease R [Streptococcus pneumoniae GA41277]
gi|353873475|gb|EHE53336.1| ribonuclease R [Streptococcus pneumoniae Netherlands15B-37]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|418162026|ref|ZP_12798713.1| ribonuclease R [Streptococcus pneumoniae GA17328]
gi|419525722|ref|ZP_14065286.1| ribonuclease R [Streptococcus pneumoniae GA14373]
gi|421236120|ref|ZP_15692721.1| ribonuclease R [Streptococcus pneumoniae 2071004]
gi|353828409|gb|EHE08549.1| ribonuclease R [Streptococcus pneumoniae GA17328]
gi|379559196|gb|EHZ24226.1| ribonuclease R [Streptococcus pneumoniae GA14373]
gi|395605039|gb|EJG65171.1| ribonuclease R [Streptococcus pneumoniae 2071004]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|418089369|ref|ZP_12726526.1| ribonuclease R [Streptococcus pneumoniae GA43265]
gi|353762055|gb|EHD42618.1| ribonuclease R [Streptococcus pneumoniae GA43265]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|419523232|ref|ZP_14062812.1| ribonuclease R [Streptococcus pneumoniae GA13723]
gi|379557963|gb|EHZ23000.1| ribonuclease R [Streptococcus pneumoniae GA13723]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|149002527|ref|ZP_01827461.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP14-BS69]
gi|225861138|ref|YP_002742647.1| ribonuclease R [Streptococcus pneumoniae Taiwan19F-14]
gi|237650876|ref|ZP_04525128.1| ribonuclease R [Streptococcus pneumoniae CCRI 1974]
gi|298229549|ref|ZP_06963230.1| ribonuclease R [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254482|ref|ZP_06978068.1| ribonuclease R [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503016|ref|YP_003724956.1| exoribonuclease R [Streptococcus pneumoniae TCH8431/19A]
gi|387788354|ref|YP_006253422.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
ST556]
gi|418085039|ref|ZP_12722223.1| ribonuclease R [Streptococcus pneumoniae GA47281]
gi|418093802|ref|ZP_12730931.1| ribonuclease R [Streptococcus pneumoniae GA49138]
gi|418100800|ref|ZP_12737886.1| ribonuclease R [Streptococcus pneumoniae 7286-06]
gi|418118735|ref|ZP_12755692.1| ribonuclease R [Streptococcus pneumoniae GA18523]
gi|418141560|ref|ZP_12778373.1| ribonuclease R [Streptococcus pneumoniae GA13455]
gi|418143785|ref|ZP_12780585.1| ribonuclease R [Streptococcus pneumoniae GA13494]
gi|418150439|ref|ZP_12787190.1| ribonuclease R [Streptococcus pneumoniae GA14798]
gi|418152704|ref|ZP_12789444.1| ribonuclease R [Streptococcus pneumoniae GA16121]
gi|418157560|ref|ZP_12794276.1| ribonuclease R [Streptococcus pneumoniae GA16833]
gi|418164833|ref|ZP_12801503.1| ribonuclease R [Streptococcus pneumoniae GA17371]
gi|418171430|ref|ZP_12808054.1| ribonuclease R [Streptococcus pneumoniae GA19451]
gi|418196006|ref|ZP_12832485.1| ribonuclease R [Streptococcus pneumoniae GA47688]
gi|418197797|ref|ZP_12834260.1| ribonuclease R [Streptococcus pneumoniae GA47778]
gi|418223495|ref|ZP_12850135.1| ribonuclease R [Streptococcus pneumoniae 5185-06]
gi|419424996|ref|ZP_13965195.1| ribonuclease R [Streptococcus pneumoniae 7533-05]
gi|419427359|ref|ZP_13967542.1| ribonuclease R [Streptococcus pneumoniae 5652-06]
gi|419429131|ref|ZP_13969298.1| ribonuclease R [Streptococcus pneumoniae GA11856]
gi|419435838|ref|ZP_13975931.1| ribonuclease R [Streptococcus pneumoniae 8190-05]
gi|419444812|ref|ZP_13984827.1| ribonuclease R [Streptococcus pneumoniae GA19923]
gi|419446956|ref|ZP_13986961.1| ribonuclease R [Streptococcus pneumoniae 7879-04]
gi|419451311|ref|ZP_13991297.1| ribonuclease R [Streptococcus pneumoniae EU-NP02]
gi|419457356|ref|ZP_13997301.1| ribonuclease R [Streptococcus pneumoniae GA02254]
gi|419501701|ref|ZP_14041387.1| ribonuclease R [Streptococcus pneumoniae GA47628]
gi|419518764|ref|ZP_14058371.1| ribonuclease R [Streptococcus pneumoniae GA08825]
gi|419527635|ref|ZP_14067178.1| ribonuclease R [Streptococcus pneumoniae GA17719]
gi|421287690|ref|ZP_15738455.1| ribonuclease R [Streptococcus pneumoniae GA58771]
gi|147759464|gb|EDK66456.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP14-BS69]
gi|225727513|gb|ACO23364.1| ribonuclease R [Streptococcus pneumoniae Taiwan19F-14]
gi|298238611|gb|ADI69742.1| exoribonuclease R [Streptococcus pneumoniae TCH8431/19A]
gi|353758734|gb|EHD39322.1| ribonuclease R [Streptococcus pneumoniae GA47281]
gi|353765678|gb|EHD46220.1| ribonuclease R [Streptococcus pneumoniae GA49138]
gi|353772736|gb|EHD53241.1| ribonuclease R [Streptococcus pneumoniae 7286-06]
gi|353790687|gb|EHD71068.1| ribonuclease R [Streptococcus pneumoniae GA18523]
gi|353805811|gb|EHD86085.1| ribonuclease R [Streptococcus pneumoniae GA13455]
gi|353809526|gb|EHD89786.1| ribonuclease R [Streptococcus pneumoniae GA13494]
gi|353815947|gb|EHD96159.1| ribonuclease R [Streptococcus pneumoniae GA14798]
gi|353819349|gb|EHD99547.1| ribonuclease R [Streptococcus pneumoniae GA16121]
gi|353824008|gb|EHE04182.1| ribonuclease R [Streptococcus pneumoniae GA16833]
gi|353829694|gb|EHE09825.1| ribonuclease R [Streptococcus pneumoniae GA17371]
gi|353835167|gb|EHE15261.1| ribonuclease R [Streptococcus pneumoniae GA19451]
gi|353861457|gb|EHE41394.1| ribonuclease R [Streptococcus pneumoniae GA47688]
gi|353863953|gb|EHE43872.1| ribonuclease R [Streptococcus pneumoniae GA47778]
gi|353878293|gb|EHE58123.1| ribonuclease R [Streptococcus pneumoniae 5185-06]
gi|379138096|gb|AFC94887.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
ST556]
gi|379532354|gb|EHY97583.1| ribonuclease R [Streptococcus pneumoniae GA02254]
gi|379551079|gb|EHZ16174.1| ribonuclease R [Streptococcus pneumoniae GA11856]
gi|379565788|gb|EHZ30779.1| ribonuclease R [Streptococcus pneumoniae GA17719]
gi|379572505|gb|EHZ37462.1| ribonuclease R [Streptococcus pneumoniae GA19923]
gi|379602062|gb|EHZ66834.1| ribonuclease R [Streptococcus pneumoniae GA47628]
gi|379614496|gb|EHZ79206.1| ribonuclease R [Streptococcus pneumoniae 7879-04]
gi|379615973|gb|EHZ80674.1| ribonuclease R [Streptococcus pneumoniae 8190-05]
gi|379618812|gb|EHZ83487.1| ribonuclease R [Streptococcus pneumoniae 5652-06]
gi|379620325|gb|EHZ84984.1| ribonuclease R [Streptococcus pneumoniae 7533-05]
gi|379623016|gb|EHZ87650.1| ribonuclease R [Streptococcus pneumoniae EU-NP02]
gi|379641743|gb|EIA06278.1| ribonuclease R [Streptococcus pneumoniae GA08825]
gi|395888302|gb|EJG99314.1| ribonuclease R [Streptococcus pneumoniae GA58771]
Length = 784
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|373462749|ref|ZP_09554431.1| ribonuclease R [Lactobacillus kisonensis F0435]
gi|371766217|gb|EHO54483.1| ribonuclease R [Lactobacillus kisonensis F0435]
Length = 773
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 155/330 (46%), Gaps = 46/330 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++A +L +G + +H+AD + Y++P SL DK+A
Sbjct: 254 VGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNFHLGVHIADVSHYVKPDSLLDKEAF 313
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G++ + + S+++
Sbjct: 314 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDQSGNVINHRIHPSLMRS 373
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY + ++L + E+ +++ + + + R +GAID E I
Sbjct: 374 TARMTYTAVNKILESHDEKTMAHYEKLVPMFEVMGQLHKILYKHRKARGAIDFDDNEAEI 433
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
V E PI I L + A+ R++ M+ E +A + S ++ YR +
Sbjct: 434 IVD--EKGHPIDIKLRIRGLAE---RMIESFMLAANETVAKHYSDKHVPFIYRVHETPDA 488
Query: 414 D--------VSAF-----------------------AHLPEGPVRSSAIVKIMRAAAIDF 442
D ++AF A PE + S +++ ++ A
Sbjct: 489 DRIRTFFQTLTAFGINVKGDPEHVTPKTLQNVLKKVAGKPEEMMVSVMLLRSLKQARY-A 547
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L P Y FTSPIRRY D + H
Sbjct: 548 DQSLGHFGLAAPYYTHFTSPIRRYPDTMVH 577
>gi|334146390|ref|YP_004509317.1| ribonuclease R [Porphyromonas gingivalis TDC60]
gi|333803544|dbj|BAK24751.1| ribonuclease R [Porphyromonas gingivalis TDC60]
Length = 731
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 269 TEEELARREDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 328
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 329 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 388
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 389 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-KERFQNGAIAFERKEVRFE 447
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 448 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 503
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 504 PDPDKLETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 562
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI + H L Y FTSPIRRY DL+ H
Sbjct: 563 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVH 596
>gi|62184878|ref|YP_219663.1| ribonuclease [Chlamydophila abortus S26/3]
gi|62147945|emb|CAH63692.1| putative ribonuclease [Chlamydophila abortus S26/3]
Length = 682
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL L + ID A + DDA+S +
Sbjct: 188 VIEETHHFSQKHISQALR-------SRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R Q+G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREQRGCIRLVLPLFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 521
>gi|329962724|ref|ZP_08300647.1| ribonuclease R [Bacteroides fluxus YIT 12057]
gi|328529558|gb|EGF56461.1| ribonuclease R [Bacteroides fluxus YIT 12057]
Length = 715
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 146/332 (43%), Gaps = 45/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D ++ + ID +A + DDALS RL+D +V +H+AD T Y++ G + DK
Sbjct: 255 EEIARREDFRNVTTFTIDPKDAKDFDDALSIRRLKDNLWEVGVHIADVTHYVKEGGIIDK 314
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I V +++
Sbjct: 315 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMTEKGEIKHSRVVHTV 374
Query: 300 IKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
IK TYE A +++ + + E+ L A + R + GAI+ E + ++
Sbjct: 375 IKSNRRFTYEEAQDIIETGKGDFKEEILQLDRFAKILRDNRFKAGAINFDRYEVKFEIDE 434
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------- 406
P +++Y + D A +LV E M+L +A LPYR
Sbjct: 435 KGKP---VSVYFKVSKD-ANKLVEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHDLPDP 490
Query: 407 -------------------GQPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAI 440
G +++I S HL E + + ++ M+ A
Sbjct: 491 EKLDNLAQFIARFGYKLRTGGTKTDISKS-INHLLDDIQGKKEENLIETVSIRAMQKARY 549
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRR+ D++ H
Sbjct: 550 SVHN-VGHYGLAFDYYTHFTSPIRRFPDMMVH 580
>gi|399888675|ref|ZP_10774552.1| ribonuclease R [Clostridium arbusti SL206]
Length = 756
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 156/336 (46%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL +K+ ID ++A +LDDA+S +L +G + +H+AD + Y+ + D
Sbjct: 238 EEEYKKRKDLRDIKMVTIDGEDAKDLDDAVSLQKLDNGNYYLGVHIADVSNYVREKNPLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+ RGTSV+L PM P KL+ SL A++ + + ++G + + + S
Sbjct: 298 KEALLRGTSVYLIDRVIPMLPRKLSNGICSLNPKVDRLALSCFMEIDNNGKVINHDIFES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDTAT 349
IIK +TY T++L N ++E + + + + + R+ +GAID
Sbjct: 358 IIKTNERMTYTDVTKILK-NEDKEVIKRYDYLYDDFIAMGKLCDILHKRRMNRGAIDFDF 416
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E++I + P I++ ++A A R++ E M++C E IA + + NL YR
Sbjct: 417 QESKIILNEQGKP---IDIKPYERA-IANRVIEEFMLVCNETIAEHMFWTNLPFVYRIHE 472
Query: 410 QSNID----VSAFAH---------------------------LPEGPVRSSAIVKIMRAA 438
+ + + FAH E V S+ +++ ++ A
Sbjct: 473 DPDTEKLEHFNEFAHNLGYVVKWGSSKVHPKELQKIIEEVKDKKEETVVSTLLLRSLKQA 532
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 533 RY---SPECVGHFGLAAKYYCHFTSPIRRYPDLMIH 565
>gi|384044407|ref|YP_005492424.1| Ribonuclease R [Bacillus megaterium WSH-002]
gi|345442098|gb|AEN87115.1| Ribonuclease R [Bacillus megaterium WSH-002]
Length = 780
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 157/336 (46%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E ++ NR+DL + ID +A +LDDA++ L++G K+ +H+AD + Y++ GS D
Sbjct: 244 EKDIGNRRDLRDQVIVTIDGADAKDLDDAVTVTELENGNYKLGVHIADVSHYVKEGSPID 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
+A +RGTSV+L PM P +L+ SL N T+S + D G + ++ +
Sbjct: 304 VEAAERGTSVYLVDRVIPMIPHRLSNGICSLNPK--VNRFTLSCEMEIDAQGEVVKHEIF 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDT 347
S+IK T +TY ++L ++ +EE + + + AA+ + R+ +GAID
Sbjct: 362 ESVIKTTERMTYSDVNKIL-VDKDEEVLARYEPIVPMFERMEKLAAILRKKRMDRGAIDF 420
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++ V + P +I + A +L+ E M+ E +A + + N+ YR
Sbjct: 421 DFKEAKVLVDDDGHPHDVILR----ERSVAEKLIEEFMLAANETVAEHFHWMNVPFIYRI 476
Query: 408 QPQSNID--------VSAFAH-----------------------LPEGPVRSSAIVKIMR 436
+ + ++ F + PE V S+ +++ M+
Sbjct: 477 HEDPDAEKLTRFLEFITNFGYTVKGTGNDIHPRALQDILEEVKGTPEEMVISTVMLRSMK 536
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + + + H L Y FTSPIRRY DL+ H
Sbjct: 537 QAKYE-AESLGHFGLSAEFYTHFTSPIRRYPDLIVH 571
>gi|237821327|ref|ZP_04597172.1| ribonuclease R [Streptococcus pneumoniae CCRI 1974M2]
Length = 765
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|407457802|ref|YP_006736107.1| RNB domain-containing protein [Chlamydia psittaci WS/RT/E30]
gi|405785494|gb|AFS24240.1| RNB domain protein [Chlamydia psittaci WS/RT/E30]
Length = 567
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G + +Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLFDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|405761098|ref|YP_006701694.1| 3'-to-5' exoribonuclease RNase R [Streptococcus pneumoniae SPNA45]
gi|404277987|emb|CCM08558.1| 3'-to-5' exoribonuclease RNase R [Streptococcus pneumoniae SPNA45]
Length = 784
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|329956491|ref|ZP_08297088.1| ribonuclease R [Bacteroides clarus YIT 12056]
gi|328524388|gb|EGF51458.1| ribonuclease R [Bacteroides clarus YIT 12056]
Length = 719
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 147/327 (44%), Gaps = 45/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ + ID +A + DDALS +L+D +V +H+AD T Y+ G + DK+A KR
Sbjct: 263 REDFRNITTFTIDPKDAKDFDDALSVRKLKDNLWEVGVHIADVTHYVTEGGIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSAIFEMTDKGEVKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ S A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDSLAKILR-EKRFAAGAINFDRYEVKFEIDEKGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQSN 412
P +++Y ++ D A +LV E M+L +A + PYR P+
Sbjct: 441 P---VSVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKNKKPKVFPYRIHDLPDPEKL 496
Query: 413 IDVSAFAHLPEGPVRSSAIV--------------------KIMRAAAIDFRKPVRHGV-- 450
++S F +R+S ++ +I + R+ V
Sbjct: 497 DNLSQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAH 472
L Y FTSPIRRY D++ H
Sbjct: 557 IGHYGLAFDYYTHFTSPIRRYPDMMVH 583
>gi|383124676|ref|ZP_09945339.1| ribonuclease R [Bacteroides sp. 1_1_6]
gi|251841167|gb|EES69248.1| ribonuclease R [Bacteroides sp. 1_1_6]
Length = 718
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS ++DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVKDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKTGDFKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P I++Y ++ D A +LV E M+L +A G N A LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKAKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 582
>gi|423619179|ref|ZP_17595012.1| ribonuclease R [Bacillus cereus VD115]
gi|401251892|gb|EJR58162.1| ribonuclease R [Bacillus cereus VD115]
Length = 810
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|194397729|ref|YP_002037609.1| ribonuclease R [Streptococcus pneumoniae G54]
gi|419490890|ref|ZP_14030630.1| ribonuclease R [Streptococcus pneumoniae GA47179]
gi|421274872|ref|ZP_15725704.1| ribonuclease R [Streptococcus pneumoniae GA52612]
gi|194357396|gb|ACF55844.1| ribonuclease R [Streptococcus pneumoniae G54]
gi|379594469|gb|EHZ59279.1| ribonuclease R [Streptococcus pneumoniae GA47179]
gi|395875600|gb|EJG86681.1| ribonuclease R [Streptococcus pneumoniae GA52612]
Length = 784
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|56964768|ref|YP_176499.1| ribonuclease R [Bacillus clausii KSM-K16]
gi|56911011|dbj|BAD65538.1| ribonuclease R [Bacillus clausii KSM-K16]
Length = 777
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 149/334 (44%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ++ ID +A +LDDA+ +L++G + +H+AD + Y+E GS
Sbjct: 239 TEADLQGRRDLRNEQIVTIDGADAKDLDDAVQVKKLENGHFLLGVHIADVSHYVEEGSPI 298
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A R TSV+L PM P +L+ SL ++ + + +G + + +
Sbjct: 299 DKEASDRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCQMEIDENGGVVNHEIFQ 358
Query: 298 SIIKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ T +TY ++L +L E E + + + A + R +GAID
Sbjct: 359 SVIRTTERMTYSDVNKILVEQDEDLRERYETLVPMFEAMEQLAQILRDKRFARGAIDFDF 418
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V N E + L + A +L+ E M+ E +A + + L YR
Sbjct: 419 KEAKVLV-NEEGKATDVVLR---ERSVAEKLIEEFMLAANETVAEHFHWLKLPFVYRIHE 474
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D ++ F ++ PE V S +++ M+ A
Sbjct: 475 DPDADKFNSFLEFITGFGYVVRGTANTVHPRALQALLEEISGEPEEMVISRVMLRSMKQA 534
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D PV H L Y FTSPIRRY DLL H
Sbjct: 535 KYDVH-PVGHFGLSADFYTHFTSPIRRYPDLLVH 567
>gi|407707597|ref|YP_006831182.1| hypothetical protein MC28_4361 [Bacillus thuringiensis MC28]
gi|407385282|gb|AFU15783.1| Ribonuclease R [Bacillus thuringiensis MC28]
Length = 810
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|255693553|ref|ZP_05417228.1| ribonuclease R [Bacteroides finegoldii DSM 17565]
gi|260620618|gb|EEX43489.1| ribonuclease R [Bacteroides finegoldii DSM 17565]
Length = 718
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +++G +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIAHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDYKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 582
>gi|417092562|ref|ZP_11957178.1| exoribonuclease R [Streptococcus suis R61]
gi|353532241|gb|EHC01913.1| exoribonuclease R [Streptococcus suis R61]
Length = 789
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKLLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ A+ K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLAKYKAIVPSVELMVKLHETLEVMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TTEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|418082898|ref|ZP_12720099.1| ribonuclease R [Streptococcus pneumoniae GA44288]
gi|419448612|ref|ZP_13988609.1| ribonuclease R [Streptococcus pneumoniae 4075-00]
gi|353756811|gb|EHD37410.1| ribonuclease R [Streptococcus pneumoniae GA44288]
gi|379623670|gb|EHZ88303.1| ribonuclease R [Streptococcus pneumoniae 4075-00]
Length = 765
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|333377320|ref|ZP_08469055.1| ribonuclease R [Dysgonomonas mossii DSM 22836]
gi|332884640|gb|EGK04897.1| ribonuclease R [Dysgonomonas mossii DSM 22836]
Length = 718
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 146/328 (44%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + + ID +A + DDALS +L++GR +V +H+AD T Y++ G DK+ R
Sbjct: 262 REDMRNTTTFTIDPRDAKDFDDALSIKQLKNGRWEVGVHIADVTHYVQEGDTIDKEGESR 321
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TS++L T PM PE+L+ SLR E +V L + +I ++ + ++I
Sbjct: 322 ATSIYLVDRTIPMLPERLSNNLCSLRPHEDKLCYSVIFELDDEANIKKHRITRTVIHSDR 381
Query: 305 MLTYESATELL---HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +E+ L++ A LR + R GAI E R ++
Sbjct: 382 RFTYEEAQDIIEGAEGDFKEDI-LQLNDLAKKLRAK-RFNDGAIAFDRHEVRFEIDEKGK 439
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQPQSNID-- 414
P + Y +D + +L+ E M+L + +A + + N YR N +
Sbjct: 440 PLSVYFKYAKD----SNKLIEEFMLLANKTVAEFVGNVPKNKNAKTFVYRIHDIPNTEKM 495
Query: 415 -----------------------VSAFAHL-------PEGPVRSSAIVKIMRAAAIDFRK 444
A HL PE + S+ ++ M A AI
Sbjct: 496 KNLSEFIRRFGYKIKVDGTKTNVSKAINHLLDEVSGKPEENLISTIAIRAM-AKAIYSTV 554
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY D++ H
Sbjct: 555 NIGHYGLAFEYYTHFTSPIRRYPDMMVH 582
>gi|229099553|ref|ZP_04230481.1| Ribonuclease R [Bacillus cereus Rock3-29]
gi|229118618|ref|ZP_04247970.1| Ribonuclease R [Bacillus cereus Rock1-3]
gi|423377078|ref|ZP_17354362.1| ribonuclease R [Bacillus cereus BAG1O-2]
gi|423440179|ref|ZP_17417085.1| ribonuclease R [Bacillus cereus BAG4X2-1]
gi|423449662|ref|ZP_17426541.1| ribonuclease R [Bacillus cereus BAG5O-1]
gi|423463252|ref|ZP_17440020.1| ribonuclease R [Bacillus cereus BAG6O-1]
gi|423532605|ref|ZP_17509023.1| ribonuclease R [Bacillus cereus HuB2-9]
gi|423542132|ref|ZP_17518522.1| ribonuclease R [Bacillus cereus HuB4-10]
gi|423548365|ref|ZP_17524723.1| ribonuclease R [Bacillus cereus HuB5-5]
gi|423621843|ref|ZP_17597621.1| ribonuclease R [Bacillus cereus VD148]
gi|228664810|gb|EEL20300.1| Ribonuclease R [Bacillus cereus Rock1-3]
gi|228683849|gb|EEL37799.1| Ribonuclease R [Bacillus cereus Rock3-29]
gi|401127943|gb|EJQ35650.1| ribonuclease R [Bacillus cereus BAG5O-1]
gi|401169469|gb|EJQ76715.1| ribonuclease R [Bacillus cereus HuB4-10]
gi|401176039|gb|EJQ83237.1| ribonuclease R [Bacillus cereus HuB5-5]
gi|401262872|gb|EJR69009.1| ribonuclease R [Bacillus cereus VD148]
gi|401639680|gb|EJS57417.1| ribonuclease R [Bacillus cereus BAG1O-2]
gi|402419950|gb|EJV52222.1| ribonuclease R [Bacillus cereus BAG4X2-1]
gi|402422123|gb|EJV54365.1| ribonuclease R [Bacillus cereus BAG6O-1]
gi|402464859|gb|EJV96547.1| ribonuclease R [Bacillus cereus HuB2-9]
Length = 810
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|15900852|ref|NP_345456.1| VacB/Rnb family exoribonuclease [Streptococcus pneumoniae TIGR4]
gi|111657964|ref|ZP_01408671.1| hypothetical protein SpneT_02000853 [Streptococcus pneumoniae
TIGR4]
gi|410476415|ref|YP_006743174.1| exoribonuclease R [Streptococcus pneumoniae gamPNI0373]
gi|421247236|ref|ZP_15703723.1| ribonuclease R [Streptococcus pneumoniae 2082170]
gi|14972450|gb|AAK75096.1| exoribonuclease, VacB/Rnb family [Streptococcus pneumoniae TIGR4]
gi|395614872|gb|EJG74890.1| ribonuclease R [Streptococcus pneumoniae 2082170]
gi|406369360|gb|AFS43050.1| exoribonuclease R [Streptococcus pneumoniae gamPNI0373]
Length = 784
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G ++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLEFGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|357238220|ref|ZP_09125557.1| ribonuclease R [Streptococcus ictaluri 707-05]
gi|356752943|gb|EHI70064.1| ribonuclease R [Streptococcus ictaluri 707-05]
Length = 773
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 55/336 (16%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y++ GS D++
Sbjct: 248 DLIGRVDLRQETTFTIDGADAKDLDDAIHIKRLDNGHFELGVHIADVSYYVKEGSALDRE 307
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSVDNS 298
A+ RGTSV++ PM PE+L+ SL + +T S ++ DG + Y + S
Sbjct: 308 AVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDGKGHVVAYQICQS 365
Query: 299 IIKPTYMLTYESATELLHLNLEEEA---------ELKILSEAAALRLQWRLQQGAIDTAT 349
+IK + +TY + ++ + +EEA +++++ + + RL++GA++ T
Sbjct: 366 VIKTRFRMTYSAVNDM--IAGDEEALESYAPILESVQLMTALHKILEKMRLRRGALNFET 423
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--- 406
E +I V + P I V Q A R++ M+ E +A + + L YR
Sbjct: 424 QEAKIIVNDKGMPVDI----VLRQRGIAERMIESFMLAANECVAEHFAKAKLPFIYRIHE 479
Query: 407 ----GQPQSNIDVSA------------------------FAHLPEGPVRSSAIVKIMRAA 438
+ Q ID ++ A P V S +++ M+ A
Sbjct: 480 EPKAEKVQKFIDYASIFGIKIQGTANKVSQEALQEVMAKIADQPGSEVLSMMLLRSMQQA 539
Query: 439 AIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 540 RYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVH 572
>gi|229105728|ref|ZP_04236357.1| Ribonuclease R [Bacillus cereus Rock3-28]
gi|228677617|gb|EEL31865.1| Ribonuclease R [Bacillus cereus Rock3-28]
Length = 812
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVEEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|421217503|ref|ZP_15674404.1| ribonuclease R [Streptococcus pneumoniae 2070335]
gi|395584989|gb|EJG45381.1| ribonuclease R [Streptococcus pneumoniae 2070335]
Length = 656
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 252 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 461
>gi|424864585|ref|ZP_18288488.1| ribonuclease R [SAR86 cluster bacterium SAR86B]
gi|400759331|gb|EJP73513.1| ribonuclease R [SAR86 cluster bacterium SAR86B]
Length = 492
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 153/342 (44%), Gaps = 48/342 (14%)
Query: 172 SNFLQKAEDNLLNRK-----DLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
SN L+K ++L +K DLT+L ID +A + DDAL + +G + +Y+ +AD
Sbjct: 22 SNKLKKEVESLTEKKFSHYQDLTNLAFVTIDGADAKDFDDALYCEKSDEGFL-LYVAIAD 80
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
Y+E S+ DK+A RGTS++ P PM EK++ + SL + N ++ +
Sbjct: 81 VAGYVEQNSILDKEAFIRGTSIYFPKKVVPMLHEKISNDYCSLLPHKNRNVLSAKIYTDK 140
Query: 287 DGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKI------LSEAAALRLQWRL 340
DG + Y ++I LTY A E++H N ++ + I LS+ A L+L+ R
Sbjct: 141 DGEVISYQFFEAVINSKQRLTYNEAEEIIHHNNHQDLDQSIKDNISNLSKLAKLQLKKRA 200
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
Q+GA++ + E + + + E ++ + + + +LV E M+L A + N
Sbjct: 201 QRGALEINSQEP---ILDINENEKVLKVTTPTRK-HSHKLVEECMLLANICAADFLKNNY 256
Query: 401 LALPYRGQPQ------------------------SNIDV------SAFAHLPEGPVRSSA 430
YR + S +DV A H E +
Sbjct: 257 GFGLYRIHEEPDLARLESVKNFFKLNGIKHFNKCSELDVINKCLNHATNHDLENVMNIFV 316
Query: 431 IVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + RA K V H L L Y FTSPIRRY DL+ H
Sbjct: 317 LQNLKRAEYS--TKEVGHFGLQLERYTHFTSPIRRYPDLIVH 356
>gi|260892134|ref|YP_003238231.1| ribonuclease R [Ammonifex degensii KC4]
gi|260864275|gb|ACX51381.1| ribonuclease R [Ammonifex degensii KC4]
Length = 715
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 156/332 (46%), Gaps = 46/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L R+DL + ID ++A +LDDA+S L DG ++ +H+AD + Y+ GS D+
Sbjct: 239 EELAGRRDLREWLIVTIDGEDAKDLDDAVSLELLHDGTYRLGVHIADVSYYVREGSALDR 298
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDN 297
+A +RGTS++LP PM P +L+ SL E + +T+SV++ D G + EY +
Sbjct: 299 EAFQRGTSIYLPDRVIPMLPPRLSNGICSLNPEE--DRLTLSVLMRVDSKGEVLEYELFP 356
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATL 350
S+I+ LTY + + L A L+++ E + RL+QGAID
Sbjct: 357 SVIRSKARLTYRAVNDYLAGRGGVPAPLPGLGRMLELMQELCLCLRRRRLKQGAIDFNLP 416
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
ET++ + ++ +++Y ++ +++ E M+L E +A + + L YR PQ
Sbjct: 417 ETKVVL---DEEGRTVDVYPAERGI-GEQIIEEFMLLANETVARHAAKLQLPFIYRIHPQ 472
Query: 411 SNID------------------------------VSAFAHLPEGPVRSSAIVKIMRAAAI 440
+ + + A A PE + ++ +++ ++ A
Sbjct: 473 PDPEKVASLEELLASLGYQNTRLGTLEPARFQEVLEAVAGKPEERLVNAVMLRSLKQARY 532
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ G L Y FTSPIRRY DL H
Sbjct: 533 AAERSEHFG-LASEYYTHFTSPIRRYPDLFIH 563
>gi|78186405|ref|YP_374448.1| 3'-5' exoribonuclease, VacB and RNase II [Chlorobium luteolum DSM
273]
gi|78166307|gb|ABB23405.1| RNAse R [Chlorobium luteolum DSM 273]
Length = 762
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 150/338 (44%), Gaps = 48/338 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+ +L R D+ ++ ID +A + DDALS L++G K+ +H+AD + Y+ S
Sbjct: 286 TDKDLQERLDVRDKVLFTIDPVDAKDFDDALSVEPLENGLWKIGVHIADVSHYVTEDSPL 345
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A+KR TSV+L PM P +L+ + SL G A +V + DG + ++
Sbjct: 346 DKEALKRATSVYLVDRVIPMLPSRLSEDICSLNPGVDRMAFSVFFTMTEDGKVQKHEFHK 405
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-AELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I TYE E+L+ + EL++L + + L + R + G +D T E R K+
Sbjct: 406 TVIHSKRRFTYEDVQEILNNKKGDYLMELQLLEKISVLLREERFRHGGLDFETEEVRFKL 465
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALP--YR--G 407
+P ++ + + + RL+ E M+L +A T+ + P YR
Sbjct: 466 GKKGEPLEVM----KKERLGSHRLIEEFMLLANRKVAEFLTKTFKEGKKVPQPVIYRVHD 521
Query: 408 QPQSN--IDVSAFAHL----------PEGPVRSSA---------------------IVKI 434
PQ I ++ F +GP+ S+ +++
Sbjct: 522 SPQQERVIILANFVKKIGYDLKINKGKDGPIVSAKSLRELLQKVHGTNVEFLVNELVLRC 581
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A +G LG Y FTSPIRRY DL+ H
Sbjct: 582 MSKAVYTGENDGHYG-LGFEHYTHFTSPIRRYPDLIVH 618
>gi|393199524|ref|YP_006461366.1| exoribonuclease R [Solibacillus silvestris StLB046]
gi|327438855|dbj|BAK15220.1| exoribonuclease R [Solibacillus silvestris StLB046]
Length = 802
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 48/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L+ R+DL + + ID +A +LDDA++ ++ +G K+ +H+AD + Y+ GS+
Sbjct: 242 TEQDLVGRRDLRNEVIVTIDGADAKDLDDAVTVVKNDNGTYKLGVHIADVSYYVTQGSVL 301
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +R TSV+L PM P +L+ SL ++ + + G + ++ +
Sbjct: 302 DQEAYERATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMTIDQAGQVLKHEIFQ 361
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L N +E EL + +++ A + R+ +GAID
Sbjct: 362 SVIKTTERMTYSDVYNILE-NPDENPELMERYENLVPMFRDMADLAQILRNKRMARGAID 420
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E+++ V P I V + A RL+ E M+ E IA + + L YR
Sbjct: 421 FDFKESKVLVNEDGWPTDI----VLRERTVAERLIEEFMLAANETIAEHFHWMELPFIYR 476
Query: 407 ----GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIM 435
+P+ +N + + LPE PV S+ +++ M
Sbjct: 477 IHEDPKPEKLQRFFEFVTNFGIMIKGTGNSVHPKALQEVIRSIEGLPEEPVISTMLLRSM 536
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A + + + H L Y FTSPIRRY DL+ H
Sbjct: 537 QQAKY-YAESLGHFGLSTEFYTHFTSPIRRYPDLIVH 572
>gi|417850209|ref|ZP_12496123.1| ribonuclease R [Streptococcus mitis SK1080]
gi|339455052|gb|EGP67663.1| ribonuclease R [Streptococcus mitis SK1080]
Length = 784
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 157/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRGEITLTIDGADAKDLDDAVHIKDLKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGHVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|188994260|ref|YP_001928512.1| ribonuclease R [Porphyromonas gingivalis ATCC 33277]
gi|188593940|dbj|BAG32915.1| ribonuclease R [Porphyromonas gingivalis ATCC 33277]
Length = 731
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ L R+D + + ID +A + DDA+S L+D +V +H+AD + Y+ G +
Sbjct: 269 TEEELARREDFRSVLTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGII 328
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L T PM PE+L + SLR E A + ++ + + +Y + +
Sbjct: 329 DQEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICH 388
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
S+IK YE A ++ + EA LK+ A LR + R Q GAI E R +
Sbjct: 389 SVIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLR-EERFQNGAIAFERKEVRFE 447
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA------TYGS--------FNNL 401
+ P +I ++ A +L+ E M+L +A T G ++L
Sbjct: 448 IDEKGRPLGVI----VKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDL 503
Query: 402 ALPYRGQ---------------PQSNIDVSA--------FAHLPEGPVRSSAIVKIMRAA 438
P + + SN++VS + PE + S+ ++ M A
Sbjct: 504 PDPDKLETLSDFIRRFGYKLRTTGSNMEVSKSINSLLDNIQNKPEENLISTVAIRSM-AK 562
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
AI + H L Y FTSPIRRY DL+ H
Sbjct: 563 AIYSTDNIGHYGLAFDFYTHFTSPIRRYPDLMVH 596
>gi|150015522|ref|YP_001307776.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
gi|149901987|gb|ABR32820.1| ribonuclease R [Clostridium beijerinckii NCIMB 8052]
Length = 755
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 152/333 (45%), Gaps = 45/333 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ R+DL L++ ID ++A +LDDA+S +L +G K+ +H+AD T Y++ S D
Sbjct: 263 EEEYKGRRDLRDLRMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVTHYVKENSPLD 322
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KR TSV+L PM P KL+ SL + +T++ + D G + ++ +
Sbjct: 323 KEALKRATSVYLIDRVVPMLPRKLSNGICSLNPR--VDRLTLTCFMEIDHKGKVVDHEIV 380
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--------EAELKILSEAAALRLQWRLQQGAIDTA 348
S+IK +TY+ T++L N EE + K++ E + R ++GAID
Sbjct: 381 ESVIKTNERMTYKDVTKILRDNDEELIKRYDYLVDDFKMMEELCGILRNKRTKRGAIDFE 440
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
E +I + P I + D+ + + R++ E M+ E +A + +L YR
Sbjct: 441 IAEAKITLNELGKP---IEIKPYDR-EISNRMIEEFMLAANETVAEHMFGTHLPFVYRIH 496
Query: 407 ---------------------GQPQSNIDVSAFAHLPE---GPVRSSAIVKIMRAAAIDF 442
Q I +F + E G + + ++ + +
Sbjct: 497 ESPDEEKLAKFKEFVYNLGYAIQWTEEIRPKSFQEILEKVKGKNEETVVSTLLLRSMMQA 556
Query: 443 R-KPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
R P G GL Y FTSPIRRY DL H
Sbjct: 557 RYAPECSGHFGLAAEYYCHFTSPIRRYPDLQIH 589
>gi|384439817|ref|YP_005654541.1| Exoribonuclease [Thermus sp. CCB_US3_UF1]
gi|359290950|gb|AEV16467.1| Exoribonuclease [Thermus sp. CCB_US3_UF1]
Length = 753
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 154/335 (45%), Gaps = 48/335 (14%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E+ L R+D L+V+ ID +A + DDA+ RL G +V +H+AD + Y+ G
Sbjct: 216 LEIPEEELGRREDFRALRVFTIDGVDAKDFDDAIHIERLPKG-FRVGVHIADVSHYVREG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S D++A RGTSV+LP PM PE+L+ SL+ GE ++ L D +
Sbjct: 275 SPLDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLKPGEDRLVLSALFELGEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQGAID 346
+I+ LTY E+ E H L E+ L +L A LR Q RL+ GA+D
Sbjct: 335 FVEGVIRSVARLTYTEVEAFAEGFGLPEAHAFLAEDLSL-LLDLTARLR-QKRLEAGALD 392
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALPY 405
+ E +++V + L++ Q +P R L+ E+M+L A+A + L +
Sbjct: 393 FSFPEVKVEVED-------GTLHLIPQQEPRARSLIEELMLLANRAVAEHLVKKGLPALF 445
Query: 406 RGQPQSNIDV-----SAFAHL-----------------------PEGPVRSSAIVKIMRA 437
R + + A A L PE PV + +++ +R
Sbjct: 446 RVHEEPLEEAYAKLRQALARLGYSLPEALSPKALQGVLLEAKGRPEEPVVAGLVLRSLRL 505
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L + Y+ FTSPIRRY DL+ H
Sbjct: 506 ARYAAEN-LGHFGLAMEHYLHFTSPIRRYPDLVVH 539
>gi|385812011|ref|YP_005848402.1| exoribonuclease R [Lactobacillus fermentum CECT 5716]
gi|299782910|gb|ADJ40908.1| Exoribonuclease R [Lactobacillus fermentum CECT 5716]
Length = 797
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 148/327 (45%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+S +L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKSVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVH 574
>gi|228910937|ref|ZP_04074746.1| Ribonuclease R [Bacillus thuringiensis IBL 200]
gi|228848888|gb|EEM93733.1| Ribonuclease R [Bacillus thuringiensis IBL 200]
Length = 812
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L NR+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKNRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|418159644|ref|ZP_12796343.1| ribonuclease R [Streptococcus pneumoniae GA17227]
gi|353821377|gb|EHE01553.1| ribonuclease R [Streptococcus pneumoniae GA17227]
Length = 675
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 252 TQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 461
>gi|365877396|ref|ZP_09416900.1| rnase r [Elizabethkingia anophelis Ag1]
gi|442587671|ref|ZP_21006486.1| ribonuclease R [Elizabethkingia anophelis R26]
gi|365754829|gb|EHM96764.1| rnase r [Elizabethkingia anophelis Ag1]
gi|442562525|gb|ELR79745.1| ribonuclease R [Elizabethkingia anophelis R26]
Length = 717
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 150/337 (44%), Gaps = 51/337 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R D+ + + ID +A + DDALS +L++G I+V +H+AD + Y++PG+L
Sbjct: 255 SEQEIAKRWDMRDILTFTIDPKDAKDFDDALSLRKLENGNIEVGVHIADVSYYVQPGTLL 314
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A R TS++L PM PE L+ E SLR E + L+ I +
Sbjct: 315 DQEAYDRATSIYLVDRVVPMLPEVLSNELCSLRPNEDKFTFSAVFELNDKAEIQKQWFGR 374
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++I +YE A E + + A E+ +L A + + R++ GAI E R +
Sbjct: 375 TVINSDRRFSYEEAQERIETKEGDLAEEINLLDSLAKILRKDRMKHGAIAFDRAEVRFNL 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN---- 412
P I +Y + D A L+ E M+L + ++ + ++L + +P +N
Sbjct: 435 NEESQP---IGVYFKISKD-ANHLIEEFMLLANKKVSEF-----VSLTRKNEPTNNTFIY 485
Query: 413 ------------------------IDVSAFAHLPEGPVRSSAIVK-----------IMR- 436
+++S + E + A VK MR
Sbjct: 486 RIHDDPDPTKLASLRDFVHTFGYKMNISNRNKISESMNKLLAEVKGKGEENMIETLAMRS 545
Query: 437 -AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ + + H L Y FTSPIRRY D++AH
Sbjct: 546 MSKAVYSTENIGHYGLAFEYYSHFTSPIRRYPDVMAH 582
>gi|227514413|ref|ZP_03944462.1| exoribonuclease R [Lactobacillus fermentum ATCC 14931]
gi|227087279|gb|EEI22591.1| exoribonuclease R [Lactobacillus fermentum ATCC 14931]
Length = 797
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/327 (27%), Positives = 148/327 (45%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+S +L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKSVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVH 574
>gi|212692333|ref|ZP_03300461.1| hypothetical protein BACDOR_01829 [Bacteroides dorei DSM 17855]
gi|237711407|ref|ZP_04541888.1| ribonuclease R [Bacteroides sp. 9_1_42FAA]
gi|265752813|ref|ZP_06088382.1| ribonuclease R [Bacteroides sp. 3_1_33FAA]
gi|345514123|ref|ZP_08793637.1| ribonuclease R [Bacteroides dorei 5_1_36/D4]
gi|423240669|ref|ZP_17221783.1| ribonuclease R [Bacteroides dorei CL03T12C01]
gi|212665210|gb|EEB25782.1| ribonuclease R [Bacteroides dorei DSM 17855]
gi|229435940|gb|EEO46017.1| ribonuclease R [Bacteroides dorei 5_1_36/D4]
gi|229454102|gb|EEO59823.1| ribonuclease R [Bacteroides sp. 9_1_42FAA]
gi|263235999|gb|EEZ21494.1| ribonuclease R [Bacteroides sp. 3_1_33FAA]
gi|392643631|gb|EIY37380.1| ribonuclease R [Bacteroides dorei CL03T12C01]
Length = 715
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 157/332 (47%), Gaps = 41/332 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ GS+
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGSVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+IIK TYE A +++ + + E+ L++ A + + RL GAID +E + ++
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLAAGAIDFDRIEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-YGSF--NNLA--LPYR----G 407
P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 432 DETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAERIGKVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRK 444
P +++ F + +R+S +V+ + A+ +
Sbjct: 488 DPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKAR 547
Query: 445 PVRHGV----LGLPGYVQFTSPIRRYMDLLAH 472
H + L Y FTSPIRR+ D++ H
Sbjct: 548 YSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|326803684|ref|YP_004321502.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
gi|326650281|gb|AEA00464.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
Length = 774
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 49/330 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D L ID +A +LDDA+S +L +G +++ +H+AD + Y+ GS DK+A KR
Sbjct: 257 RDDYRSLLTITIDGADAKDLDDAISLRKLGNGHLELGVHIADVSYYVTAGSAIDKEAWKR 316
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG---SIAEYSVDNSIIK 301
GTSV+L PM P++L+ SL+ + + +T+S ++ D + Y + SII+
Sbjct: 317 GTSVYLTDRVVPMLPQRLSNGICSLQANQ--DRLTMSCMMEIDPKSVKVINYHIGPSIIQ 374
Query: 302 PTYMLTYESATELLHLNLEEEAE-----LKILSEAAALRLQW---RLQQGAIDTATLETR 353
Y + Y+ +LL ++ +E L +L++ AAL R +GAID T E
Sbjct: 375 SDYRMVYDDVNKLLEGKDKQLSEKYAELLPMLNDMAALHQSLSDKRHHRGAIDFDTPEAE 434
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I V P +++ V ++ A R++ M+ E +A + +L YR +
Sbjct: 435 IIVDKEGHP---LDIVVRERG-TAERMIESFMLAANETVAHEFTKRHLPFIYRIHESPDD 490
Query: 414 D-VSAFAHLPE------------------------------GPVRSSAIVKIMRAAAIDF 442
+ + F + PV ++ M+ A D
Sbjct: 491 ERMKTFIEFAQTLGVHVKKTDGKVSPKDLQNTLEEAAGESYAPVVQVMALRSMQQAKYDL 550
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H L Y FTSPIRRY DLLAH
Sbjct: 551 -QPIGHYGLAAKDYTHFTSPIRRYPDLLAH 579
>gi|419481998|ref|ZP_14021791.1| ribonuclease R [Streptococcus pneumoniae GA40563]
gi|379580872|gb|EHZ45761.1| ribonuclease R [Streptococcus pneumoniae GA40563]
Length = 784
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|307704704|ref|ZP_07641603.1| ribonuclease R [Streptococcus mitis SK597]
gi|307621751|gb|EFO00789.1| ribonuclease R [Streptococcus mitis SK597]
Length = 784
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSL--NPQVDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIQLMAKLHETLENMRMKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA-HL--PEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F H+ + A+ IMR + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLHIYGTASEISQEALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|380692948|ref|ZP_09857807.1| ribonuclease R [Bacteroides faecis MAJ27]
Length = 718
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 150/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS ++DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKAGDFKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 582
>gi|421307248|ref|ZP_15757892.1| ribonuclease R [Streptococcus pneumoniae GA60132]
gi|395907855|gb|EJH18740.1| ribonuclease R [Streptococcus pneumoniae GA60132]
Length = 784
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 49/329 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS DK+A+ R
Sbjct: 250 RLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALDKEALNR 309
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
TSV++ PM PE+L+ SL + +T S ++ D G + Y++ ++IK
Sbjct: 310 ATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTITQTVIKT 367
Query: 303 TYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++ +TY ++L + E+ E ++++++ R+++GA++ T E +I
Sbjct: 368 SFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFDTNEAKIL 427
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY----RGQP-- 409
V P I V Q A R++ M++ E +A + F+ L LP+ +P
Sbjct: 428 VDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYRIHEEPKA 481
Query: 410 ---QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV---------------- 446
Q ID S+F G + A+ IMRA + V
Sbjct: 482 EKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQQARYSE 541
Query: 447 -RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 542 HNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|421240531|ref|ZP_15697078.1| ribonuclease R [Streptococcus pneumoniae 2080913]
gi|395609113|gb|EJG69203.1| ribonuclease R [Streptococcus pneumoniae 2080913]
Length = 784
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|189459727|ref|ZP_03008512.1| hypothetical protein BACCOP_00355 [Bacteroides coprocola DSM 17136]
gi|189433574|gb|EDV02559.1| ribonuclease R [Bacteroides coprocola DSM 17136]
Length = 716
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 148/325 (45%), Gaps = 41/325 (12%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L+ G +V +H+AD + Y++ GS+ DK+A+KR
Sbjct: 260 REDFRDIVTFTIDPKDAKDFDDALSIRQLKPGLWEVGVHIADVSHYVKEGSIIDKEAVKR 319
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V ++ I +Y + +++IK
Sbjct: 320 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFNMNEKAEIKDYRIRHTVIKSNR 379
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + + E+ L++ A + + R+ GAI+ E + ++ P
Sbjct: 380 RFTYEEAQNIIETGEGDYKEEILQLNKLAQILREKRMAAGAINFDRCEVKFEIDEKGKP- 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------------ 406
+++Y + + A +L+ E M+L +A + + PYR
Sbjct: 439 --LSVYFK-VSKEANKLIEEFMLLANRTVAEHIGKVPKNKKPKVFPYRIHDLPDPDKLDN 495
Query: 407 --------------GQPQSNIDVSAFAHLP--EGPVRSSAIVKIMRAAAIDFRKPVR--- 447
G ++++ S L EG + I + A R +
Sbjct: 496 LSQFIARFGYKIRTGGSKTDVSKSINRLLSDIEGKKEQNLIETVSLRAMQKARYSIYNIG 555
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 556 HYGLAFDFYTHFTSPIRRYPDLMVH 580
>gi|212696115|ref|ZP_03304243.1| hypothetical protein ANHYDRO_00651 [Anaerococcus hydrogenalis DSM
7454]
gi|212676744|gb|EEB36351.1| hypothetical protein ANHYDRO_00651 [Anaerococcus hydrogenalis DSM
7454]
Length = 700
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 158/336 (47%), Gaps = 43/336 (12%)
Query: 174 FLQKAED--NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
F++K D + NR+DL L ID ++ + DDA+S + + I +Y+H+AD + Y+
Sbjct: 232 FIEKDVDLSKVKNREDLRDLFTVTIDGRDSKDFDDAISIEKDNEDYI-LYVHIADVSHYV 290
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
+ S DK+A +RG S +L PM PE+L+ SL E ++++ + ++ G +
Sbjct: 291 KEKSEIDKEAYQRGNSTYLYNLVLPMLPEELSNGICSLNPNENRLSLSLKMKINDKGKVI 350
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN---LEEEA---ELKILSEAAALRLQWRLQQGAI 345
+Y + ++I+ Y L Y+ + L N ++E +L + ++ + + R ++G+I
Sbjct: 351 DYKIYKALIRSNYRLVYDDVNDYLDYNKKVYDDEVLLEKLDLFNDLYKILKKKREKRGSI 410
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF------- 398
D E++I V+N D ++N+ + ++ A +++ E M++ E IA+ +F
Sbjct: 411 DFNFTESQIDVSNQGD---VLNISLFERG-SANKMIEEFMLVSNETIASLFAFMDFPSIY 466
Query: 399 ------------------NNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI----VKIMR 436
N L +G+ D +G S I ++ MR
Sbjct: 467 RIHEKPKEEKVESFKNILNTLGYNIKGKELHPKDFQDILKQIKGKDDESLINMLMLRTMR 526
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + + G L Y FT+PIRRY DL+ H
Sbjct: 527 KAKYTNYRDMHFG-LATKYYTHFTAPIRRYPDLIVH 561
>gi|407455068|ref|YP_006733959.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci GR9]
gi|405781611|gb|AFS20360.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci GR9]
Length = 681
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 151/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G + +Y + S+I+ Y +TY+ E++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLFDYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|423230707|ref|ZP_17217111.1| ribonuclease R [Bacteroides dorei CL02T00C15]
gi|423244418|ref|ZP_17225493.1| ribonuclease R [Bacteroides dorei CL02T12C06]
gi|392630357|gb|EIY24350.1| ribonuclease R [Bacteroides dorei CL02T00C15]
gi|392641992|gb|EIY35764.1| ribonuclease R [Bacteroides dorei CL02T12C06]
Length = 715
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 157/335 (46%), Gaps = 47/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ GS+
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGSVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLN----LEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
+IIK TYE A +++ EE EL L++ LR Q RL GAID +E +
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLTQ--ILRKQ-RLAAGAIDFDRIEVK 428
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-YGSF--NNLA--LPYR-- 406
++ P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 429 FEIDETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAERIGKVPKNKKAKVFPYRIH 484
Query: 407 --GQPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAID 441
P +++ F + +R+S +V+ + A+
Sbjct: 485 DLPDPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQ 544
Query: 442 FRKPVRHGV----LGLPGYVQFTSPIRRYMDLLAH 472
+ H + L Y FTSPIRR+ D++ H
Sbjct: 545 KARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|322387713|ref|ZP_08061322.1| ribonuclease R [Streptococcus infantis ATCC 700779]
gi|419843875|ref|ZP_14367180.1| ribonuclease R [Streptococcus infantis ATCC 700779]
gi|321141580|gb|EFX37076.1| ribonuclease R [Streptococcus infantis ATCC 700779]
gi|385702299|gb|EIG39444.1| ribonuclease R [Streptococcus infantis ATCC 700779]
Length = 780
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 158/343 (46%), Gaps = 55/343 (16%)
Query: 177 KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSL 236
++E +L R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 242 RSEKDLEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSA 301
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYS 294
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y+
Sbjct: 302 LDKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYT 359
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDT 347
+ ++IK ++ +TY ++L + E+ + K + + L + R+++GA++
Sbjct: 360 ITQTVIKTSFRMTYSDVNDILAGDEEKRQDYKKIVPSIELMAKLHETLESMRIKRGALNF 419
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 420 DTNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLDLPFIY 473
Query: 406 --RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKI 434
+P Q ID +SA P V S +++
Sbjct: 474 RIHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRS 533
Query: 435 MRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
M+ A HG GL Y FTSPIRRY DLL H +
Sbjct: 534 MQQARY---SEHNHGHYGLAADYYTHFTSPIRRYPDLLVHRMI 573
>gi|312131136|ref|YP_003998476.1| rnase r [Leadbetterella byssophila DSM 17132]
gi|311907682|gb|ADQ18123.1| RNAse R [Leadbetterella byssophila DSM 17132]
Length = 739
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 145/338 (42%), Gaps = 54/338 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ + R+D+ + + ID +A + DDALS L++G +V IH+AD + Y+ PG+L +
Sbjct: 249 EEEIKKRRDVRDILTFTIDPFDAKDFDDALSFRTLENGNYEVGIHIADVSHYVRPGTLLE 308
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A+KR TSV+L T PM PEKL+ SLR E + ++ + +
Sbjct: 309 EEALKRATSVYLVDRTIPMLPEKLSNNLCSLRPHEDKLVFSAIFEMNDKAEVLKEWFGRC 368
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I+ TYE A E+L +E L L+ A + R ++GA + T E + ++
Sbjct: 369 IMHSDRRFTYEEAQEILDGKEDETYSPVLHTLNNMAHILRDERFKKGAFNFETDEVKFRL 428
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVS 416
P + +Y + + D A +L+ E M+L +AT F + P +P + +
Sbjct: 429 DEEGKP---LGIYQKVRKD-AHKLIEEFMLLANRRVAT---FVHNKGPKDQEPYTMV--- 478
Query: 417 AFAHLPEGPVRSSAIVKIMRAAAIDFR--------------------KPVR--------- 447
H P P + V+ + KP++
Sbjct: 479 YRVHEPPNPSKLETFVRFANKMGFSIKSGSTQQLSQSLNRLMTEIEGKPIQNVLESLAVR 538
Query: 448 -------------HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++AH
Sbjct: 539 TMSKARYSTQNLGHFGLAFDHYSHFTSPIRRYPDIMAH 576
>gi|149019567|ref|ZP_01834886.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP23-BS72]
gi|418102693|ref|ZP_12739769.1| ribonuclease R [Streptococcus pneumoniae NP070]
gi|419475367|ref|ZP_14015207.1| ribonuclease R [Streptococcus pneumoniae GA14688]
gi|419486523|ref|ZP_14026289.1| ribonuclease R [Streptococcus pneumoniae GA44128]
gi|421206426|ref|ZP_15663487.1| ribonuclease R [Streptococcus pneumoniae 2090008]
gi|421208795|ref|ZP_15665817.1| ribonuclease R [Streptococcus pneumoniae 2070005]
gi|421229620|ref|ZP_15686292.1| ribonuclease R [Streptococcus pneumoniae 2061376]
gi|421291847|ref|ZP_15742585.1| ribonuclease R [Streptococcus pneumoniae GA56348]
gi|147930942|gb|EDK81922.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP23-BS72]
gi|353776859|gb|EHD57334.1| ribonuclease R [Streptococcus pneumoniae NP070]
gi|379560912|gb|EHZ25933.1| ribonuclease R [Streptococcus pneumoniae GA14688]
gi|379588138|gb|EHZ52984.1| ribonuclease R [Streptococcus pneumoniae GA44128]
gi|395575751|gb|EJG36316.1| ribonuclease R [Streptococcus pneumoniae 2070005]
gi|395576340|gb|EJG36896.1| ribonuclease R [Streptococcus pneumoniae 2090008]
gi|395596281|gb|EJG56501.1| ribonuclease R [Streptococcus pneumoniae 2061376]
gi|395894064|gb|EJH05045.1| ribonuclease R [Streptococcus pneumoniae GA56348]
Length = 784
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|29348486|ref|NP_811989.1| ribonuclease R [Bacteroides thetaiotaomicron VPI-5482]
gi|298385815|ref|ZP_06995372.1| ribonuclease R [Bacteroides sp. 1_1_14]
gi|29340390|gb|AAO78183.1| ribonuclease R [Bacteroides thetaiotaomicron VPI-5482]
gi|298261043|gb|EFI03910.1| ribonuclease R [Bacteroides sp. 1_1_14]
Length = 718
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 150/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS ++DG +V +H+AD T Y++ G + DK
Sbjct: 257 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPIKDGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G + + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEVRDSRIVHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKTGDFKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKVGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR+S ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 582
>gi|419493110|ref|ZP_14032837.1| ribonuclease R [Streptococcus pneumoniae GA47210]
gi|421227139|ref|ZP_15683847.1| ribonuclease R [Streptococcus pneumoniae 2072047]
gi|379595148|gb|EHZ59957.1| ribonuclease R [Streptococcus pneumoniae GA47210]
gi|395595966|gb|EJG56190.1| ribonuclease R [Streptococcus pneumoniae 2072047]
Length = 784
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVSSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|386585725|ref|YP_006082127.1| exoribonuclease R [Streptococcus suis D12]
gi|353737871|gb|AER18879.1| exoribonuclease R [Streptococcus suis D12]
Length = 789
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMIKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TAEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|146319045|ref|YP_001198757.1| exoribonuclease R [Streptococcus suis 05ZYH33]
gi|146321252|ref|YP_001200963.1| exoribonuclease R [Streptococcus suis 98HAH33]
gi|253752108|ref|YP_003025249.1| exoribonuclease R [Streptococcus suis SC84]
gi|253753933|ref|YP_003027074.1| exoribonuclease R [Streptococcus suis P1/7]
gi|253755192|ref|YP_003028332.1| exoribonuclease R [Streptococcus suis BM407]
gi|386578228|ref|YP_006074634.1| 3'-5' exoribonuclease [Streptococcus suis GZ1]
gi|386582307|ref|YP_006078711.1| exoribonuclease R [Streptococcus suis SS12]
gi|386588494|ref|YP_006084895.1| exoribonuclease R [Streptococcus suis A7]
gi|145689851|gb|ABP90357.1| Exoribonuclease R [Streptococcus suis 05ZYH33]
gi|145692058|gb|ABP92563.1| Exoribonuclease R [Streptococcus suis 98HAH33]
gi|251816397|emb|CAZ52028.1| putative exoribonuclease R [Streptococcus suis SC84]
gi|251817656|emb|CAZ55404.1| putative exoribonuclease R [Streptococcus suis BM407]
gi|251820179|emb|CAR46543.1| putative exoribonuclease R [Streptococcus suis P1/7]
gi|292558691|gb|ADE31692.1| 3'-5' exoribonuclease [Streptococcus suis GZ1]
gi|353734453|gb|AER15463.1| exoribonuclease R [Streptococcus suis SS12]
gi|354985655|gb|AER44553.1| exoribonuclease R [Streptococcus suis A7]
Length = 789
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEKDFEGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAVKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDCKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK T+ +TY +++ N E+ + K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTTFRMTYSDVNDMIAGNKEKLDKYKTIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M+ E +A + F L LP+
Sbjct: 423 TAEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLAANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|148984718|ref|ZP_01817986.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP3-BS71]
gi|387757361|ref|YP_006064340.1| putative exoribonuclease R [Streptococcus pneumoniae OXC141]
gi|418232043|ref|ZP_12858630.1| ribonuclease R [Streptococcus pneumoniae GA07228]
gi|418236482|ref|ZP_12863050.1| ribonuclease R [Streptococcus pneumoniae GA19690]
gi|419479801|ref|ZP_14019608.1| ribonuclease R [Streptococcus pneumoniae GA19101]
gi|419499491|ref|ZP_14039190.1| ribonuclease R [Streptococcus pneumoniae GA47597]
gi|147923109|gb|EDK74224.1| preprotein translocase subunit SecG [Streptococcus pneumoniae
SP3-BS71]
gi|301799950|emb|CBW32533.1| putative exoribonuclease R [Streptococcus pneumoniae OXC141]
gi|353886770|gb|EHE66550.1| ribonuclease R [Streptococcus pneumoniae GA07228]
gi|353892714|gb|EHE72462.1| ribonuclease R [Streptococcus pneumoniae GA19690]
gi|379570967|gb|EHZ35926.1| ribonuclease R [Streptococcus pneumoniae GA19101]
gi|379602545|gb|EHZ67316.1| ribonuclease R [Streptococcus pneumoniae GA47597]
gi|429317786|emb|CCP37588.1| putative exoribonuclease R [Streptococcus pneumoniae SPN034156]
gi|429319330|emb|CCP32585.1| putative exoribonuclease R [Streptococcus pneumoniae SPN034183]
gi|429321146|emb|CCP34559.1| putative exoribonuclease R [Streptococcus pneumoniae SPN994039]
gi|429322966|emb|CCP30600.1| putative exoribonuclease R [Streptococcus pneumoniae SPN994038]
Length = 784
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|169334034|ref|ZP_02861227.1| hypothetical protein ANASTE_00427 [Anaerofustis stercorihominis DSM
17244]
gi|169258751|gb|EDS72717.1| ribonuclease R [Anaerofustis stercorihominis DSM 17244]
Length = 704
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/407 (25%), Positives = 179/407 (43%), Gaps = 62/407 (15%)
Query: 116 LEFKKDSDRVLLAVAQRPDGKKNWM--------VYDQNGASCSIKPQQVTFVVPGVEKFD 167
+++ K+ D+V++ + P KKNW+ D+NG I+ + VP +F
Sbjct: 172 IKYAKNKDKVVVEITDFPKDKKNWVGKITKVLGRKDENGVD--IEALIYEYDVP--YEFS 227
Query: 168 H---KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
H K+ + D RKDLT + ++ ID A +LDDA+S ++ ++ + + +H
Sbjct: 228 HLALKEADELEFDSFDKFKGKRKDLTDVNIFTIDGPTAKDLDDAVSIVKKENEYV-LSVH 286
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+AD + Y++ S DKDA +RGTS++ PM P+ L SL E A +V +
Sbjct: 287 IADVSNYVKRNSEIDKDAYERGTSIYFADRVIPMLPKTLCENLCSLNPKEEKKAFSVDMR 346
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLH--LNLEE-----EAELKILSEAAALRL 336
++ +G + +Y+ SIIK Y+ EL +L E E +L + E L
Sbjct: 347 INKEGKLLDYNFYKSIIKSKAKFVYDEVNELFDGSKDLREEYYTYEEDLNTMKELYELLR 406
Query: 337 QWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCG------- 389
Q R +G +D E I V N + ++ + ++ A R++ + M++
Sbjct: 407 QRRYVEGNLDFDVDENFITVENG----VVTDVSLRERG-IAERIIEQFMLVANTSACEFF 461
Query: 390 -----------------EAIATYGSFNNLALPYR---GQPQSNIDVSAFAHLPEGP---- 425
E ++ + F N AL Y+ + ++ F EG
Sbjct: 462 SSMGLNGIYRVHEEPDKEKLSGFIKFAN-ALGYKLRLHDGHYSKELEEFLKTIEGDKNEQ 520
Query: 426 VRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + +++ M+ A H L + Y FTSPIRRY DL+ H
Sbjct: 521 LFKTVLLRCMKKAVYTTENK-GHFALAIENYTHFTSPIRRYPDLMVH 566
>gi|417698387|ref|ZP_12347560.1| ribonuclease R [Streptococcus pneumoniae GA41317]
gi|419452995|ref|ZP_13992968.1| ribonuclease R [Streptococcus pneumoniae EU-NP03]
gi|419505907|ref|ZP_14045568.1| ribonuclease R [Streptococcus pneumoniae GA49194]
gi|332202828|gb|EGJ16897.1| ribonuclease R [Streptococcus pneumoniae GA41317]
gi|379607821|gb|EHZ72567.1| ribonuclease R [Streptococcus pneumoniae GA49194]
gi|379626704|gb|EHZ91320.1| ribonuclease R [Streptococcus pneumoniae EU-NP03]
Length = 784
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|331701669|ref|YP_004398628.1| ribonuclease R [Lactobacillus buchneri NRRL B-30929]
gi|329129012|gb|AEB73565.1| ribonuclease R [Lactobacillus buchneri NRRL B-30929]
Length = 775
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 44/329 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++A +L +G + +H+AD + Y++PGS DK+A
Sbjct: 254 IGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNYHLGVHIADVSHYVQPGSAIDKEAF 313
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G+I ++ + S+++
Sbjct: 314 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDPSGNIIKHRIHPSLMRS 373
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY + +L + ++ + + + E + + R +GAID E I
Sbjct: 374 TARMTYTAVNNILESHDQKTMDRYDKLVPMFETMGELHKILYKHRKARGAIDFDDNEAEI 433
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V + P I L V A+ R++ M+ E +A + ++ YR + D
Sbjct: 434 IVDDKGHPID-IKLRVRGTAE---RMIESFMLAANETVAKHYYEKHVPFIYRVHETPDAD 489
Query: 415 --------VSAF-----------------------AHLPEGPVRSSAIVKIMRAAAIDFR 443
++AF A PE + S +++ ++ A
Sbjct: 490 RIRTFFETLTAFGINVKGDPEHVTPKTLQNVLKKVAGKPEEMMVSVMLLRSLKQARY-AD 548
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L P Y FTSPIRRY D + H
Sbjct: 549 QSLGHFGLAAPFYTHFTSPIRRYPDTMVH 577
>gi|94265606|ref|ZP_01289350.1| Exoribonuclease II [delta proteobacterium MLMS-1]
gi|93453885|gb|EAT04243.1| Exoribonuclease II [delta proteobacterium MLMS-1]
Length = 663
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 139/297 (46%), Gaps = 21/297 (7%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL L V ID +LDDAL R Q +V IH+AD +++PGS+ A++
Sbjct: 272 GRRDLRQLPVMTIDGASTRDLDDALHIQR-QGANFQVGIHIADVAHFVKPGSILFNAAVR 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++ P PM P +L+ SL G A++ + + G I + S++ ++++
Sbjct: 331 RVTSLYFPEGQVPMLPPRLSENLCSLLAGRPRPAMSFLLTITPQGEIVDSSIEATVVEVK 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
L Y+ ELL + +L LS+ R RL+ GA+ + IK+ E
Sbjct: 391 KRLDYDQVEELLAAGDRDLQDLLGLSQTLRRR---RLEAGALLLPIPDVNIKLD--EQGR 445
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPE 423
P ++L ED PA LVSE+M+L A Y + +A +R Q + + L +
Sbjct: 446 PAVSL--EDVDLPARLLVSELMVLANMQAAEYVAQQQVAGLFRSQDEPH------QRLVQ 497
Query: 424 GPVRSSAIVKIMR-----AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
G I I R +P RH +G Y TSPIRR +DL+ +Q+
Sbjct: 498 G--YEEDIFTIWRQRKQLKPGQLLTQPGRHSGVGAASYTTITSPIRRLLDLVMQHQL 552
>gi|406592066|ref|YP_006739246.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci CP3]
gi|405787938|gb|AFS26681.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci CP3]
Length = 681
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 153/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ +++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDKIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN---------------IDV----------------SAFAHLPEG 424
S ++LP+R N D+ S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|379727055|ref|YP_005319240.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius DAT561]
gi|376317958|dbj|BAL61745.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius DAT561]
Length = 784
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 50/344 (14%)
Query: 172 SNFLQK--AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+N+L E+ LLNRKDL ++ ID ++A +LDDA++ +L +G + +H+AD +
Sbjct: 245 ANYLSDNFTEEELLNRKDLRDQQIVTIDGEDAKDLDDAVTVKKLNNGNYYLGVHIADVSH 304
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y++ GS DK+A +RGTSV+L PM P++L+ + SL ++ + ++ G
Sbjct: 305 YVKEGSFIDKEAYERGTSVYLIDRVIPMIPQRLSNDICSLNPKVPRLTLSCEMEINHQGK 364
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEE-----EAELKILSEAAALRL---QWRLQ 341
+ + + S+I+ +TY + E+L + ++ + + E L L R Q
Sbjct: 365 VVHHEIFPSVIQTAERMTYTAVNEILEDQNTQTMRHYQSLVPMFKEMQELHLILSTMREQ 424
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+GA+ E+RI V +P+ I + R+V M++ E +A + +++L
Sbjct: 425 RGALSFDDHESRIIVNEAGEPQRI----ELRERGIGERIVESFMLIANETVAKH--YHDL 478
Query: 402 ALPY----RGQPQSNIDVSAFAHL-----------------------------PEGPVRS 428
LP+ QP+ F + PE V +
Sbjct: 479 KLPFIYRIHEQPKEEKMQRFFDFISILGILIKGSKSEITPKDLQSALKKVMGRPEEAVVN 538
Query: 429 SAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ +++ M+ A +G L Y FTSPIRRY DL+ H
Sbjct: 539 TILLRSMQQARYSENNYGHYG-LAATYYTHFTSPIRRYPDLIVH 581
>gi|223932655|ref|ZP_03624654.1| ribonuclease R [Streptococcus suis 89/1591]
gi|302024109|ref|ZP_07249320.1| exoribonuclease R [Streptococcus suis 05HAS68]
gi|330832414|ref|YP_004401239.1| exoribonuclease R [Streptococcus suis ST3]
gi|386583674|ref|YP_006080077.1| exoribonuclease R [Streptococcus suis D9]
gi|223898625|gb|EEF64987.1| ribonuclease R [Streptococcus suis 89/1591]
gi|329306637|gb|AEB81053.1| exoribonuclease R [Streptococcus suis ST3]
gi|353735820|gb|AER16829.1| exoribonuclease R [Streptococcus suis D9]
Length = 789
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 162/341 (47%), Gaps = 53/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R DL ++ ID +A +LDDA+ +L++G +++ +H+AD + Y+ GS
Sbjct: 245 SEQDFAGRLDLRDEIIFTIDGADAKDLDDAVHIKQLKNGNLELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+KRGTSV++ PM PE+L+ SL + +T S ++ D G + ++ +
Sbjct: 305 DQEAIKRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDRKGKVVKHWI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK + +TY +++ N E+ + K + + L ++ R ++GA++
Sbjct: 363 GQTVIKTNFRMTYSDVNDMIAGNQEKLDKYKTIVPSVELMVKLHETLETMRYKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY-- 405
T E +I V +D P+ I L Q A R++ M++ E +A + F L LP+
Sbjct: 423 TAEAKIIVN--KDGLPVDIQLR---QRGIAERMIESFMLVANECVAEH--FAKLDLPFIY 475
Query: 406 --RGQPQSN-----IDVSAFAHL------------------------PEGPVRSSAIVKI 434
+P+S+ ID + L P V + +++
Sbjct: 476 RIHEEPKSDKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRS 535
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
M+ A +G LG Y FTSPIRRY DLL H V
Sbjct: 536 MQQARYSEHNHGHYG-LGAEFYTHFTSPIRRYPDLLVHRMV 575
>gi|218131623|ref|ZP_03460427.1| hypothetical protein BACEGG_03243 [Bacteroides eggerthii DSM 20697]
gi|217985926|gb|EEC52265.1| ribonuclease R [Bacteroides eggerthii DSM 20697]
Length = 719
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 146/327 (44%), Gaps = 45/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D ++ ID +A + DDALS +L+D +V +H+AD T Y+ S+ DK+A KR
Sbjct: 263 REDFRNITTLTIDPKDAKDFDDALSVRKLKDNLWEVGVHIADVTHYVTEDSIIDKEAEKR 322
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G I + +++IK
Sbjct: 323 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSAIFEMTDKGEIKNSRIVHTVIKSDR 382
Query: 305 MLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
TYE A +++ + +EE LK+ + A LR + R GAI+ E + ++
Sbjct: 383 RFTYEEAQQIIETKEGDFKEEI-LKLDALAKILR-EKRFAAGAINFDRYEVKFEIDEKGK 440
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQSN 412
P I++Y ++ D A +LV E M+L +A S PYR P+
Sbjct: 441 P---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKSKKPKVFPYRIHDLPDPEKL 496
Query: 413 IDVSAFAHLPEGPVRSSAIV--------------------KIMRAAAIDFRKPVRHGV-- 450
++S F +R+S ++ +I + R+ V
Sbjct: 497 DNLSQFIARFGYKLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSVHN 556
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAH 472
L Y FTSPIRRY D+L H
Sbjct: 557 IGHYGLSFDYYTHFTSPIRRYPDMLVH 583
>gi|184154846|ref|YP_001843186.1| ribonuclease R [Lactobacillus fermentum IFO 3956]
gi|183226190|dbj|BAG26706.1| ribonuclease R [Lactobacillus fermentum IFO 3956]
Length = 797
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RPDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+ ++L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKGVNDILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVH 574
>gi|422413961|ref|ZP_16490920.1| ribonuclease R [Listeria innocua FSL S4-378]
gi|313617318|gb|EFR89753.1| ribonuclease R [Listeria innocua FSL S4-378]
Length = 793
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS DK+
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|390600976|gb|EIN10370.1| RNB-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 1141
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 152/344 (44%), Gaps = 52/344 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E L NR+DL +V+ ID D A +LDDALS DG +V +H+AD + +++P + D
Sbjct: 561 EHELKNRRDLRDQRVFTIDPDTAKDLDDALSLKANDDGTFQVGVHIADVSYFVKPNTALD 620
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
+DA KR TSV+L PM P L+ E SL+ G+ A +V + DG + + +
Sbjct: 621 RDARKRATSVYLVQRAVPMLPPALSEEMCSLKPGQERLAFSVLFTVTKDGRVVDKWFGKT 680
Query: 299 IIKPTYMLTYESATELL-------------HLNLEEEAELKILSEAAALRLQWRLQQGAI 345
IK L Y +L H + E +LKIL + A L + R Q G++
Sbjct: 681 AIKSAAKLAYADVQNVLDGKPLGGVPVTPEHGASDLEHDLKILQDLAKLLKERRTQNGSM 740
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN--NLAL 403
++ R+K ++ P I+ ++ D A LV E M++ A+A + + + AL
Sbjct: 741 SLQSI--RLKFTLDKNGLP-IDCAPYERYD-AHSLVEEYMLMTNIAVAQHVAVHLPEQAL 796
Query: 404 PYRGQPQSNIDVSAFAH-LPEGPVR--SSAIVKIMRA----------------------- 437
R + AF EG V S IMR+
Sbjct: 797 LRRHDSPLERRLKAFQERAKEGGVEIDISTAGSIMRSFDAIKDPVARRTLEMRFFKCTQR 856
Query: 438 ------AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+D K H L +P Y FTSPIRRY D+L H Q+
Sbjct: 857 AKYFCTGMLDIAK-YGHYALNVPLYTHFTSPIRRYADILVHRQL 899
>gi|423416984|ref|ZP_17394073.1| ribonuclease R [Bacillus cereus BAG3X2-1]
gi|401108402|gb|EJQ16333.1| ribonuclease R [Bacillus cereus BAG3X2-1]
Length = 810
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELVKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEIVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY D + H
Sbjct: 541 RYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|291402815|ref|XP_002718229.1| PREDICTED: DIS3-like exonuclease 1-like [Oryctolagus cuniculus]
Length = 1023
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 160/349 (45%), Gaps = 64/349 (18%)
Query: 184 NRKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
+RKDL THL V+ ID +++DDALS L G +++ +H+AD T +++P S DK+A
Sbjct: 448 DRKDLRKTHL-VFTIDPKGCEDVDDALSVRTLSSGNLELGVHIADVTYFVKPKSHLDKEA 506
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS---VDNS 298
R T+ +LP Y M P L+ SL +G + +SV+ D + E S
Sbjct: 507 RARATTYYLPDRRYDMLPSVLSSNLCSLLRG--VDRYAMSVIWELDMTTYEIKKVWYGRS 564
Query: 299 IIKPTYMLTYESATELLHLNL---------------EEEAELKILSEA----AALRLQWR 339
II TY L+YE+A ELL NL E+E L+ L+ A A + +R
Sbjct: 565 IIHSTYQLSYEAAQELLDGNLSITGNIEEFQDMEEKEKEDRLQELTWAIEKLADIASHFR 624
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGS 397
Q+G +D A I+++ D E I V Q R+V+E MIL +A Y S
Sbjct: 625 AQRG-LDGALDLDGIEISVLLDEEKNILDLVPRQQRRIHRMVAECMILANHWVARKIYES 683
Query: 398 FNNLALPYRGQPQ-----SNIDVSAFA---HLPEGPVRSSA-------------IVKIMR 436
F AL R P S + SA A H+ R+ A + K++R
Sbjct: 684 FPRQALLRRHPPPRQNLFSELKQSAKAGGFHIDTSSNRALALSLDNAYDVSDPMVNKLLR 743
Query: 437 -------AAAIDF------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ F + H LGL Y FTSPIRRY D++ H
Sbjct: 744 NMATLAMSNALYFSTGSCREREFHHYGLGLDKYTHFTSPIRRYADIIVH 792
>gi|198274471|ref|ZP_03207003.1| hypothetical protein BACPLE_00619 [Bacteroides plebeius DSM 17135]
gi|198272673|gb|EDY96942.1| ribonuclease R [Bacteroides plebeius DSM 17135]
Length = 716
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 148/327 (45%), Gaps = 45/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+ G +V +H+AD + YI+ GS+ DK+A KR
Sbjct: 260 REDFRDVVTFTIDPKDAKDFDDALSIRTLKPGLWEVGVHIADVSHYIKEGSIIDKEAAKR 319
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V ++ + Y + +++IK
Sbjct: 320 ATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAYSVIFEMNEKAEVKNYRIRHTVIKSNR 379
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ L+ A + + R+ G+I+ E + ++ P
Sbjct: 380 RFTYEEAQQIIETGEGDYKEEVLQLNRLAQILREKRMAAGSINFDRCEVKFEIDETGKP- 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------------ 406
+++Y + + A +L+ E M+L + +A Y + LPYR
Sbjct: 439 --LSVYFK-VSKEANKLIEEFMLLANKTVAEYVGKVPKNKKPKVLPYRIHDLPDPDKLDN 495
Query: 407 --------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGV-- 450
G ++ + S HL G + ++ ++ + R+ +
Sbjct: 496 LNQFIARFGYKIRTGGSKAEVSKS-INHLL-GEIEGKKEQNLIETVSLRAMQKARYSIYN 553
Query: 451 -----LGLPGYVQFTSPIRRYMDLLAH 472
L Y FTSPIRRY DL+ H
Sbjct: 554 IGHYGLAFDYYTHFTSPIRRYPDLMVH 580
>gi|421224841|ref|ZP_15681585.1| ribonuclease R [Streptococcus pneumoniae 2070768]
gi|395590629|gb|EJG50933.1| ribonuclease R [Streptococcus pneumoniae 2070768]
Length = 675
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 252 IQTVIKTSFRMTYSDVNDILAGDEEKRKEYHKIVPSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFA---HLPEGPVRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F + + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 461
>gi|444380022|ref|ZP_21179189.1| Exoribonuclease II [Enterovibrio sp. AK16]
gi|443675843|gb|ELT82557.1| Exoribonuclease II [Enterovibrio sp. AK16]
Length = 665
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 150/330 (45%), Gaps = 41/330 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLTHL ID + ++DDAL + +DG + I +ADPT Y+ G+ DK
Sbjct: 186 DESLVREDLTHLPFITIDNESTKDMDDALHTVANEDGTFTLTIAIADPTAYVAQGTDLDK 245
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS-VDNS 298
+A +RG +++LP PM P +L+ + SLR E+ A+ V L +DG+I+E + ++
Sbjct: 246 EARERGFTIYLPGRNIPMLPRELSDDLCSLRDEEIRPALCCRVTLLADGTISEDAQFFSA 305
Query: 299 IIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAIDTATL 350
IK L Y++ ++LL ++ ++ L A R+ WR
Sbjct: 306 TIKSQGRLAYDNVSDLLETGSCDKWQPSEIIAEQVNALHSLAKARMAWREANAVTFPDRP 365
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIATYGSFNNLALPYR 406
+ R +++ D ++ ++V D A R+V E MI +C G A+ + F
Sbjct: 366 DYRFELSEDND---VVAIHV-DPRRIANRMVEEAMITANICAGRALREHFGFGVFNTHAG 421
Query: 407 GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAI--------------DFRK-------- 444
P+ D + G V + ++ I +A+ RK
Sbjct: 422 FHPEKMADAVELINGHGGNVTAESLETIEGFSALRRWLNEQETTYLDNRIRKYQSYSEIG 481
Query: 445 --PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P H +GL Y +TSPIR+Y D++ H
Sbjct: 482 NAPAPHFAMGLDVYATWTSPIRKYGDMVNH 511
>gi|421277246|ref|ZP_15728066.1| ribonuclease R [Streptococcus mitis SPAR10]
gi|395876527|gb|EJG87603.1| ribonuclease R [Streptococcus mitis SPAR10]
Length = 780
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 55/342 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E +L R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDLEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQDYKKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
+ A HG GL Y FTSPIRRY DLL H +
Sbjct: 535 QQARYSDHN---HGHYGLAADYYTHFTSPIRRYPDLLVHRMI 573
>gi|16801605|ref|NP_471873.1| hypothetical protein lin2543 [Listeria innocua Clip11262]
gi|16415065|emb|CAC97770.1| lin2543 [Listeria innocua Clip11262]
Length = 793
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS DK+
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEEV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|414074353|ref|YP_006999570.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974273|gb|AFW91737.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 667
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 148/336 (44%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L R+D + Y ID +++ +LDDA+ +L +G ++ +H+AD + Y+ GS
Sbjct: 195 TQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVHIADVSHYVTEGSSL 254
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
+++A R TSV++ PM P +L+ SL + + +T+S ++ D G I Y +
Sbjct: 255 NEEAYARATSVYVTDRVVPMLPVRLSNNLCSLNEAQ--ERLTMSCLMEIDDKGKIVTYKI 312
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-LKILSEAA-----ALRLQ-----WRLQQGA 344
S+IK TY +TY + +++H E E L+ S+ A A+ L R +G
Sbjct: 313 SPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKFSKIADSIEVAVELHEILETMRKDRGM 372
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I+ E +I + + P I V+ D A R++ M++ E +A F LP
Sbjct: 373 IEFDESEAKIILDDEGHPIEI----VKRDRDTAERMIESFMLMANETVAL--DFQKKKLP 426
Query: 405 YRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF---------------------- 442
+ AFA L E + + AI+F
Sbjct: 427 SLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKGTSFEKALTYQLRHTM 486
Query: 443 ------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K +H L Y FTSPIRRY DL+ H
Sbjct: 487 STAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 522
>gi|307127475|ref|YP_003879506.1| ribonuclease R [Streptococcus pneumoniae 670-6B]
gi|421233962|ref|ZP_15690584.1| ribonuclease R [Streptococcus pneumoniae 2061617]
gi|421249269|ref|ZP_15705731.1| ribonuclease R [Streptococcus pneumoniae 2082239]
gi|306484537|gb|ADM91406.1| ribonuclease R [Streptococcus pneumoniae 670-6B]
gi|395602859|gb|EJG63001.1| ribonuclease R [Streptococcus pneumoniae 2061617]
gi|395614570|gb|EJG74589.1| ribonuclease R [Streptococcus pneumoniae 2082239]
Length = 784
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ +R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEDRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|406027220|ref|YP_006726052.1| ribonuclease R [Lactobacillus buchneri CD034]
gi|405125709|gb|AFS00470.1| ribonuclease R [Lactobacillus buchneri CD034]
Length = 776
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 44/329 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++A +L +G + +H+AD + Y++PGS DK+A
Sbjct: 254 IGREDITDQDLVTIDGESSKDLDDAVTAWKLPNGNYHLGVHIADVSHYVQPGSAIDKEAF 313
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G+I ++ + S+++
Sbjct: 314 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCEMEIDPSGNIIKHRIHPSLMRS 373
Query: 303 TYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRI 354
T +TY + +L + ++ + + + E + + R +GAID E I
Sbjct: 374 TARMTYTAVNNILESHDQKTMDRYDKLVPMFETMGELHKILYKHRKARGAIDFDDNEAEI 433
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V + P I L V A+ R++ M+ E +A + ++ YR + D
Sbjct: 434 IVDDKGHPID-IKLRVRGTAE---RMIESFMLAANETVAKHYYEKHVPFIYRVHETPDAD 489
Query: 415 --------VSAF-----------------------AHLPEGPVRSSAIVKIMRAAAIDFR 443
++AF A PE + S +++ ++ A
Sbjct: 490 RIRTFFETLTAFGINVKGDPEHVTPKTLQNVLKKVAGKPEEMMVSVMLLRSLKQARY-AD 548
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L P Y FTSPIRRY D + H
Sbjct: 549 QSLGHFGLAAPFYTHFTSPIRRYPDTMVH 577
>gi|393785787|ref|ZP_10373933.1| ribonuclease R [Bacteroides nordii CL02T12C05]
gi|392661406|gb|EIY54992.1| ribonuclease R [Bacteroides nordii CL02T12C05]
Length = 713
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 150/335 (44%), Gaps = 47/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E+ + R+D + + ID +A + DDALS +L+D +V +H+AD T Y++ G +
Sbjct: 252 SEEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRKLKDNLWEVGVHIADVTHYVKEGGII 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V + G + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFLCSLRPHEEKLAFSVIFDITEKGEVKNSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+II TYE A +++ + +EE L + + A ALR + R GAI+ E +
Sbjct: 372 TIIYSDRRFTYEEAQQIIETQEGDFKEEV-LMMDTIAKALR-ERRFAAGAINFDRYEVKF 429
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR--- 406
++ P +++Y ++ D A +LV E M+L +A LPYR
Sbjct: 430 EIDEKGKP---VSVYFKESKD-ANKLVEEFMLLANRTVAEKIGRVPKGKKAKVLPYRIHD 485
Query: 407 -GQPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRA 437
P+ ++S F +R+S ++ M+
Sbjct: 486 LPDPEKLDNLSQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQK 545
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L Y FTSPIRR+ D++ H
Sbjct: 546 ARYSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|149278034|ref|ZP_01884173.1| exoribonuclease II [Pedobacter sp. BAL39]
gi|149231232|gb|EDM36612.1| exoribonuclease II [Pedobacter sp. BAL39]
Length = 709
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 154/335 (45%), Gaps = 44/335 (13%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q D + +R+D + ID +A + DDA+S +L +G +V +H+AD Y+ P S
Sbjct: 246 QITADEIKDRRDFRETVTFTIDPADAKDFDDAISFKKLDNGHYEVGVHIADVAHYVTPNS 305
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLR--QGEVCNAVTVSVVLHSDGSIAEY 293
DK+A R TSV+L PM PE+L+ SLR + ++C A L + +I
Sbjct: 306 ALDKEAYGRATSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFAAVFE--LDNKANIINE 363
Query: 294 SVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLET 352
++I +YE A E++ + E+ L+E A + + + GAI + E
Sbjct: 364 WFGRTVIHSDRRFSYEEAQEVIENKTGDFSEEILKLNELAYILRDKKFKNGAISFESTEV 423
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY----------------- 395
+ K+ ED +P + +YV+++ D A +L+ + M+L + +A +
Sbjct: 424 KFKL--DEDGKP-LGVYVKERKD-AHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFIYRS 479
Query: 396 ---------GSFNNLA--LPYRGQPQSNIDVS-AFAHL---PEGPVRSSAIVKIM---RA 437
G+F A Y+ +S+ D++ + +L EG + + ++ A
Sbjct: 480 HDSPNLENLGNFALFAARFGYKINMKSDKDIAKSLNYLMEDVEGKKEQNVLTQLAIRSMA 539
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A+ K H L Y FTSPIRRY D++ H
Sbjct: 540 KAVYTTKKTSHYGLAFDHYTHFTSPIRRYPDVMVH 574
>gi|409099069|ref|ZP_11219093.1| ribonuclease R [Pedobacter agri PB92]
Length = 710
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 152/333 (45%), Gaps = 48/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + RKD ++ + ID +A + DDA+S +L +G ++ +H+AD + Y+ G+ DK
Sbjct: 250 DEIAKRKDFRNVLTFTIDPADAKDFDDAISYQKLPNGNHEIGVHIADVSHYVIQGTDLDK 309
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGE--VCNAVTVSVVLHSDGSIAEYSVDN 297
+A R TSV+L PM PE+L+ SLR E +C A L +I
Sbjct: 310 EAYSRATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFE--LDEQANIQSEWYGR 367
Query: 298 SIIKPTYMLTYESATELLHLNLEEE--AELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++I +YE A E++ N E + E+ L+E A + + + GAI + E + K
Sbjct: 368 TVIHSDRRFSYEEAQEVIE-NKEGDYATEILKLNELAYILRDRKFKNGAISFESTEVKFK 426
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA---------------------- 393
+ P I +YV+++ D A +L+ + M+L +A
Sbjct: 427 LDESGKP---IGVYVKERKD-AHKLIEDYMLLANRKVAEFVAKKQKGEKKLTFVYRVHDS 482
Query: 394 ----TYGSFNNLA--LPYRGQPQSNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAA 439
T +F A Y+ +S+ +++ + HL E + +S ++ M A A
Sbjct: 483 PNMETLNTFATFASRFGYKINTKSDKEIAKSLNHLMADVEGKKEQNILTSLAIRSM-AKA 541
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I K H L Y FTSPIRRY D++AH
Sbjct: 542 IYSTKKTSHYGLAFEYYTHFTSPIRRYPDVMAH 574
>gi|217963449|ref|YP_002349127.1| ribonuclease R [Listeria monocytogenes HCC23]
gi|386009167|ref|YP_005927445.1| ribonuclease R [Listeria monocytogenes L99]
gi|386027778|ref|YP_005948554.1| putative exoribonuclease R [Listeria monocytogenes M7]
gi|217332719|gb|ACK38513.1| ribonuclease R [Listeria monocytogenes HCC23]
gi|307571977|emb|CAR85156.1| ribonuclease R [Listeria monocytogenes L99]
gi|336024359|gb|AEH93496.1| putative exoribonuclease R [Listeria monocytogenes M7]
Length = 793
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|222100836|ref|YP_002535404.1| Ribonuclease R [Thermotoga neapolitana DSM 4359]
gi|221573226|gb|ACM24038.1| Ribonuclease R [Thermotoga neapolitana DSM 4359]
Length = 710
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 152/329 (46%), Gaps = 42/329 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKD+ + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 240 DLVGRKDMRDRVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQE 299
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P +L+ SL +G+ ++V + + +G + +Y V S+I
Sbjct: 300 AFRRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDREGRVVKYDVFPSVI 359
Query: 301 KPTYMLTYESATELLHLNLEEEAELKILSE--------AAALRLQWRLQQGAIDTATLET 352
+ + YE E L + E + SE A LR R + ID + E
Sbjct: 360 RSKKRMIYERVNEFLE-DPSSVKEYEPFSELIHNAVELAEILREARRKRGAIIDIESDE- 417
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
+KV E+ + ++++ V + A RL+ E MI E IA L YR + +
Sbjct: 418 -VKVVLDENGQ-VVDI-VPRKRGIAERLIEEFMIRANETIAEIFDHAGLPFMYRVHEEPD 474
Query: 413 IDV--------------SAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKP 445
+ + F+H + + P+RSS ++R+
Sbjct: 475 PETIFQLKNYLEAMGIRAKFSHNIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSA 534
Query: 446 VRHGVLGLP--GYVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 535 VNIGHFGLASYAYTHFTSPIRRYPDLVVH 563
>gi|374308194|ref|YP_005054625.1| ribonuclease R [Filifactor alocis ATCC 35896]
gi|320120455|gb|EFE27773.2| ribonuclease R [Filifactor alocis ATCC 35896]
Length = 708
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/350 (28%), Positives = 157/350 (44%), Gaps = 47/350 (13%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED L NR DL Y ID + + DDA+S + + G + +H+AD T Y++ + D
Sbjct: 239 EDELKNRLDLREELTYTIDGSDTRDFDDAISVSKDEHGNYHLGVHIADVTHYVKEHTPLD 298
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+KRGTSV+L PM P++L+ SL + +T+S ++ D G + E+ +
Sbjct: 299 KEALKRGTSVYLVDKVIPMLPKELSNGICSLNPD--VDRLTLSCLMTIDKNGVVMEHQIV 356
Query: 297 NSIIKPTYMLTYESATELLHL------NLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
S+I+ Y L YE + LL E E L E A + + R +GAI+
Sbjct: 357 ESVIRSKYRLVYEDVSHLLETIDRTKQFTELEQSLIFAEELANILFEVREHRGAIEFDFP 416
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E+++ V + E ++++ V ++ A ++ E M++ E ++ L YR Q
Sbjct: 417 ESKVIVED----EQVLDVQVRERK-IANDMIQEFMLIANETVSKEYFHKKLPFVYRVHEQ 471
Query: 411 SNID--------VSAF---AHLPE-----------------GPVRSSAIVKIMRAAAIDF 442
D ++ F A L E G I K+M +
Sbjct: 472 PAEDKIKEFNNFIAVFGVHASLDEEANVEPKDLQKILKEVKGREEEDIISKMMLRSLRQA 531
Query: 443 R-KPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQI 489
R PV G GL Y FT+PIRRY DL H + + ++S G +I
Sbjct: 532 RYSPVNEGHFGLAAKYYTHFTAPIRRYPDLQIHRIIKMDIHHYLS-GKKI 580
>gi|290893673|ref|ZP_06556654.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404408824|ref|YP_006691539.1| ribonuclease R [Listeria monocytogenes SLCC2376]
gi|290556746|gb|EFD90279.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|404242973|emb|CBY64373.1| ribonuclease R [Listeria monocytogenes SLCC2376]
Length = 793
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVENDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|418132815|ref|ZP_12769688.1| ribonuclease R [Streptococcus pneumoniae GA11304]
gi|353806771|gb|EHD87044.1| ribonuclease R [Streptococcus pneumoniae GA11304]
Length = 765
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 159/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ +R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEDRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|383783490|ref|YP_005468056.1| ribonuclease R [Leptospirillum ferrooxidans C2-3]
gi|383082399|dbj|BAM05926.1| putative ribonuclease R [Leptospirillum ferrooxidans C2-3]
Length = 766
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 154/337 (45%), Gaps = 54/337 (16%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+D + ID D A + DDALS +RL+DG +V IH+AD Y+ G+ DK+A +
Sbjct: 261 HREDFRDWDIVTIDGDNARDFDDALSLVRLKDGSFEVGIHIADVATYVREGTSLDKEAFR 320
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEY---SVDNSII 300
RGTSV+ P PMFPE L+ +SL+ E + + SVVL D AE + S+I
Sbjct: 321 RGTSVYFPDRVVPMFPEVLSNGVLSLKPDE--DRLARSVVLRLDPHTAEVLDSRITLSVI 378
Query: 301 KPTYMLTYESATELLHLNLEEEAE----LKILSE---AAALRLQWRLQQGAIDTATLETR 353
+ +TY ++L E+A +LSE A + + R G++D E
Sbjct: 379 RSRMRMTYSKVHDVLR-GANEDARYTPWTSLLSELWSVAQILRKKRFLGGSLDFDLPEPE 437
Query: 354 IKVANPEDPEPIIN--LYVEDQADPAMRLVSEMMILCGEAIATY-------GSFN----- 399
I + P I+ Y+ Q L+ E M+L + +A G F
Sbjct: 438 IILDLRGHPIDIVRSPRYLSHQ------LIEEFMLLANQVVAKELVIRWGGGIFRVHEAP 491
Query: 400 ---------------NLALPYR-GQPQSNIDVSAFAHLPEGPVRSS----AIVKIMRAAA 439
LA+P + G+ ++ +S G V+ ++++ ++ A
Sbjct: 492 SIERISDLNLFLGALGLAMPIKEGEVPTSKTLSRVLEATRGTVQEKMVHFSVLRSLKQAR 551
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
D KP+ H L + Y FTSPIRRY DL+ H +G
Sbjct: 552 YDV-KPLGHFGLAMSDYTHFTSPIRRYPDLVVHRLLG 587
>gi|346315569|ref|ZP_08857082.1| ribonuclease R [Erysipelotrichaceae bacterium 2_2_44A]
gi|345904545|gb|EGX74292.1| ribonuclease R [Erysipelotrichaceae bacterium 2_2_44A]
Length = 710
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKYIEPGSLS 237
ED++ RKDL L ID ++A +LDDA+S +L++ + ++Y+H+AD + Y+ GS
Sbjct: 232 EDDIAQRKDLRKLLTITIDGEDAKDLDDAISVEKLENNKGYRLYVHIADVSHYVRAGSAI 291
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A RGTSV++ PM P L SL +T + + G I Y +
Sbjct: 292 DQEAYARGTSVYVVDRVVPMLPHALCNGICSLNPRVDRLTLTCCMDIDKKGEIDNYKIYP 351
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE----------LKILSEAAALRLQWRLQQGAIDT 347
SII +TY+ +L + + + E +K+LS R R + GAID
Sbjct: 352 SIICSDERMTYKKVNAILAGDAQSQKEYPHLLNLCLNMKVLSGIIRRR---RERLGAIDF 408
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
T E +I V +P I V + + R++ + MI E +A + + + YR
Sbjct: 409 DTREAKILVDEKGNPTDI----VLRERGESERIIEDFMIAANECVAMHMKWMEVPSMYRI 464
Query: 407 ---GQPQSNIDVSAFAH---------------------LPEGP------VRSSAIVKIMR 436
+P+ D + A L E V SS +++ M+
Sbjct: 465 HEAPEPKKMRDFATTAKSLGYNFQGGIQNVYPAQLQSLLNEARGQENYFVLSSFMLRAMQ 524
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D R + H L L Y+ FTSPIRRY DL+ H
Sbjct: 525 KARYDNR-CIGHFGLALKNYLHFTSPIRRYPDLVVH 559
>gi|228942262|ref|ZP_04104801.1| Ribonuclease R [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228975192|ref|ZP_04135750.1| Ribonuclease R [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981830|ref|ZP_04142125.1| Ribonuclease R [Bacillus thuringiensis Bt407]
gi|384189208|ref|YP_005575104.1| exoribonuclease II [Bacillus thuringiensis serovar chinensis CT-43]
gi|410677537|ref|YP_006929908.1| ribonuclease R [Bacillus thuringiensis Bt407]
gi|452201615|ref|YP_007481696.1| 3'-to-5' exoribonuclease RNase R [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228777942|gb|EEM26214.1| Ribonuclease R [Bacillus thuringiensis Bt407]
gi|228784471|gb|EEM32492.1| Ribonuclease R [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228817306|gb|EEM63392.1| Ribonuclease R [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326942917|gb|AEA18813.1| exoribonuclease II [Bacillus thuringiensis serovar chinensis CT-43]
gi|409176666|gb|AFV20971.1| ribonuclease R [Bacillus thuringiensis Bt407]
gi|452107008|gb|AGG03948.1| 3'-to-5' exoribonuclease RNase R [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 814
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|421289605|ref|ZP_15740356.1| ribonuclease R [Streptococcus pneumoniae GA54354]
gi|421304924|ref|ZP_15755580.1| ribonuclease R [Streptococcus pneumoniae GA62331]
gi|395888846|gb|EJG99856.1| ribonuclease R [Streptococcus pneumoniae GA54354]
gi|395905586|gb|EJH16491.1| ribonuclease R [Streptococcus pneumoniae GA62331]
Length = 784
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERIIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLCIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|322391817|ref|ZP_08065282.1| ribonuclease R [Streptococcus peroris ATCC 700780]
gi|321145297|gb|EFX40693.1| ribonuclease R [Streptococcus peroris ATCC 700780]
Length = 780
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 55/342 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ GS
Sbjct: 243 SEKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TS+++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSIYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRREYKKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
+ A HG GL Y FTSPIRRY DLL H +
Sbjct: 535 QQARYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVHRMI 573
>gi|229020334|ref|ZP_04177100.1| Ribonuclease R [Bacillus cereus AH1273]
gi|229026565|ref|ZP_04182914.1| Ribonuclease R [Bacillus cereus AH1272]
gi|423388611|ref|ZP_17365837.1| ribonuclease R [Bacillus cereus BAG1X1-3]
gi|228734742|gb|EEL85387.1| Ribonuclease R [Bacillus cereus AH1272]
gi|228740970|gb|EEL91202.1| Ribonuclease R [Bacillus cereus AH1273]
gi|401642686|gb|EJS60392.1| ribonuclease R [Bacillus cereus BAG1X1-3]
Length = 808
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELVKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEIVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY D + H
Sbjct: 541 RYD-SESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|456014682|gb|EMF48284.1| 3-to-5 exoribonuclease RNase R [Planococcus halocryophilus Or1]
Length = 764
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 157/333 (47%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L +R+DL + ++ ID +A +LDDA+ ++ DG K+ +H+AD + Y+ GS D++
Sbjct: 246 DLNDRRDLRNEQIVTIDGADAKDLDDAVQVVKYDDGTYKLGVHIADVSHYVTEGSAIDRE 305
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TS++L PM P +L+ SL ++ ++ + G + + + S+I
Sbjct: 306 AYDRATSIYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHDIFQSVI 365
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
+ +TY E+L + +E E +++ E A + R+++GAID E+
Sbjct: 366 NTSARMTYTDVYEILEQDNQELKEQYSELVPMFELMKELAEVLRTKRMRRGAIDFDFKES 425
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR---- 406
++ V P +++ + ++ A RL+ E M+ E +A F+ + +P YR
Sbjct: 426 KVLVDENGYP---VDVVIRERT-VAERLIEEFMLAANETVAE--QFHTMEVPAIYRIHED 479
Query: 407 GQPQ---------SNID------------------VSAFAHLPEGPVRSSAIVKIMRAAA 439
+P+ +N V + A PE PV S+ +++ M+ A
Sbjct: 480 PKPEKLQRFFEFVTNFGIVVKGSGTQIHPRALQEIVESIAGTPEEPVVSTMMLRSMQQAK 539
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY DL+ H
Sbjct: 540 YS-AESLGHFGLSTEFYTHFTSPIRRYPDLIVH 571
>gi|410858222|ref|YP_006974162.1| putative ribonuclease [Chlamydia psittaci 01DC12]
gi|410811117|emb|CCO01760.1| putative ribonuclease [Chlamydia psittaci 01DC12]
Length = 682
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 188 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 240
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 241 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 300
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ +++ N + K L A L ++
Sbjct: 301 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDKIVE-NKQPHPIAKTLLAMAELSEKF 359
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 360 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 415
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 416 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 474
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 475 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 521
>gi|242005176|ref|XP_002423448.1| Exosome complex exonuclease RRP44, putative [Pediculus humanus
corporis]
gi|212506526|gb|EEB10710.1| Exosome complex exonuclease RRP44, putative [Pediculus humanus
corporis]
Length = 957
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/350 (27%), Positives = 156/350 (44%), Gaps = 56/350 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED+L NR DL HL + ++D ++DDAL +L +G +V IH+AD T +I+PG+
Sbjct: 435 TEDDLKNRVDLRHLDICSVDPPGCTDIDDALHCRKLDNGNFEVGIHIADVTHFIKPGTAL 494
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A RGT+V+L M PE L+ SLR+ E A + V + G I
Sbjct: 495 DKEAALRGTTVYLVDKRIDMVPELLSSNLCSLRENEDRFAFSCIVEMTKKGKILNTKFHK 554
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATL 350
S+I+ +TYE A L ++++ + L+ L+ A + + RL GA+ A+
Sbjct: 555 SVIRSRKAMTYEEA----QLKIDDKKQNDNVTQSLRWLNNLAKIIKKKRLDNGALVLASP 610
Query: 351 ETRIKV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYRG 407
E + + + DP + + D ++ E M+L ++A + F A+ R
Sbjct: 611 EVKFLMDSETHDPLDVEAKKIRDTNS----MIEEFMLLANISVAEKIFKDFPECAV-LRR 665
Query: 408 QPQ---------------SNIDVSA-----------FAHLPEGPVRSSAIVKIMRA---- 437
P+ N D+S A P P ++ ++KI+
Sbjct: 666 HPKPPLSNFEPLIKAGRVQNFDISVDTGKSLSVSLEKAVKPNNPYFNT-MLKILATRCMM 724
Query: 438 AAIDF------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
A+ F + H L P Y FTSPIRRY D++ H + + A
Sbjct: 725 QAVYFSSGMFKEEDFFHYGLACPIYTHFTSPIRRYADIIVHRLLAVSVNA 774
>gi|406594105|ref|YP_006741395.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci MN]
gi|405782537|gb|AFS21285.1| vacB and RNase II 3'-5' exoribonucleases family protein [Chlamydia
psittaci MN]
Length = 681
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 48/348 (13%)
Query: 159 VVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRI 218
V+ F K IS L+ +RKDL +L + ID A + DDA+S +
Sbjct: 187 VIEETNHFSQKHISQALR-------SRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNY 239
Query: 219 KVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAV 278
+ +H+AD + Y+ P S D++A KR S++ P PM P L+ SL+ AV
Sbjct: 240 ILGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV 299
Query: 279 TVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW 338
+V + G +++Y + S+I+ Y +TY+ +++ N + K L A L ++
Sbjct: 300 SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDKIVE-NKQPHPIAKTLLAMAELSEKF 358
Query: 339 ---RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
R ++G I + + N ++P +I E + + +L+ E M+ E +A +
Sbjct: 359 SDIREKRGCIRLVLPSFTMSLDNLQEPVTLI----ETRQTLSHKLIEEFMLKANEVVAYH 414
Query: 396 GSFNNLALPYRGQPQSN-------------------------------IDVSAFAHLPEG 424
S ++LP+R N + S+ H P
Sbjct: 415 ISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGH-PLE 473
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P+ S V+ M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 474 PILHSQFVRSMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLIVH 520
>gi|423300891|ref|ZP_17278915.1| ribonuclease R [Bacteroides finegoldii CL09T03C10]
gi|408472226|gb|EKJ90754.1| ribonuclease R [Bacteroides finegoldii CL09T03C10]
Length = 718
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 151/333 (45%), Gaps = 47/333 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS +++G +V +H+AD T Y++ G + DK
Sbjct: 257 EEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVHIADVTHYVKEGGIIDK 316
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A +V + G I + + +++
Sbjct: 317 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFDITEKGEIKDSRIAHTV 376
Query: 300 IKPTYMLTYESATELLHL---NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
I TYE A +++ + +EE L + + A ALR + R GAI+ E + ++
Sbjct: 377 INSDRRFTYEEAQQIIETKEGDYKEEV-LMLDTIAKALR-EKRFAAGAINFDRYEVKFEI 434
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----G 407
P I++Y ++ D A +LV E M+L + +A + LPYR
Sbjct: 435 DEKGKP---ISVYFKESKD-ANKLVEEFMLLANKTVAEKIGRVPKNKKPKVLPYRIHDLP 490
Query: 408 QPQSNIDVSAFAHLPEGPVRSSAI----------------------------VKIMRAAA 439
P+ ++S F VR++ ++ M+ A
Sbjct: 491 DPEKLENLSQFIARFGYKVRTNGTKTDISKSINHLLDDIHGKKEENLIETVSIRAMQKAR 550
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 551 YSTHN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 582
>gi|53715849|ref|YP_101841.1| ribonuclease R [Bacteroides fragilis YCH46]
gi|60683768|ref|YP_213912.1| exoribonuclease [Bacteroides fragilis NCTC 9343]
gi|265764716|ref|ZP_06092991.1| ribonuclease R [Bacteroides sp. 2_1_16]
gi|336407528|ref|ZP_08588025.1| ribonuclease R [Bacteroides sp. 2_1_56FAA]
gi|375360672|ref|YP_005113444.1| putative exoribonuclease [Bacteroides fragilis 638R]
gi|383116347|ref|ZP_09937097.1| ribonuclease R [Bacteroides sp. 3_2_5]
gi|423248016|ref|ZP_17229032.1| ribonuclease R [Bacteroides fragilis CL03T00C08]
gi|423252967|ref|ZP_17233898.1| ribonuclease R [Bacteroides fragilis CL03T12C07]
gi|423259671|ref|ZP_17240594.1| ribonuclease R [Bacteroides fragilis CL07T00C01]
gi|423263354|ref|ZP_17242357.1| ribonuclease R [Bacteroides fragilis CL07T12C05]
gi|423270099|ref|ZP_17249071.1| ribonuclease R [Bacteroides fragilis CL05T00C42]
gi|423272445|ref|ZP_17251392.1| ribonuclease R [Bacteroides fragilis CL05T12C13]
gi|423282684|ref|ZP_17261569.1| ribonuclease R [Bacteroides fragilis HMW 615]
gi|52218714|dbj|BAD51307.1| ribonuclease R [Bacteroides fragilis YCH46]
gi|60495202|emb|CAH10023.1| putative exoribonuclease [Bacteroides fragilis NCTC 9343]
gi|251948396|gb|EES88678.1| ribonuclease R [Bacteroides sp. 3_2_5]
gi|263254100|gb|EEZ25534.1| ribonuclease R [Bacteroides sp. 2_1_16]
gi|301165353|emb|CBW24925.1| putative exoribonuclease [Bacteroides fragilis 638R]
gi|335947432|gb|EGN09223.1| ribonuclease R [Bacteroides sp. 2_1_56FAA]
gi|387775981|gb|EIK38084.1| ribonuclease R [Bacteroides fragilis CL07T00C01]
gi|392657494|gb|EIY51127.1| ribonuclease R [Bacteroides fragilis CL03T12C07]
gi|392660890|gb|EIY54488.1| ribonuclease R [Bacteroides fragilis CL03T00C08]
gi|392699644|gb|EIY92818.1| ribonuclease R [Bacteroides fragilis CL05T00C42]
gi|392707649|gb|EIZ00765.1| ribonuclease R [Bacteroides fragilis CL07T12C05]
gi|392708875|gb|EIZ01977.1| ribonuclease R [Bacteroides fragilis CL05T12C13]
gi|404582252|gb|EKA86947.1| ribonuclease R [Bacteroides fragilis HMW 615]
Length = 714
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 43/331 (12%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ + R+D + + ID +A + DDALS L+DG +V +H+AD T Y++ GS+ DK
Sbjct: 254 EEIARREDFRKVTTFTIDPKDAKDFDDALSIRPLKDGLWEVGVHIADVTHYVKEGSIIDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KR TSV+L T PM PE+L SLR E A + + G + + + +++
Sbjct: 314 EAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTV 373
Query: 300 IKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
I+ TYE A +++ + + E+ +L A + R GAI+ E + ++
Sbjct: 374 IESDRRFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFTAGAINFDRYEVKFEIDE 433
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALPYR----GQP 409
P I++Y ++ D A +LV E M+L +A LPYR P
Sbjct: 434 KGKP---ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKAPKGKKPKVLPYRIHDLPDP 489
Query: 410 Q--------------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAID 441
+ + DVS + HL E + + ++ M+ A
Sbjct: 490 EKLDNLAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYS 549
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRR+ D++ H
Sbjct: 550 THN-IGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|392955544|ref|ZP_10321075.1| ribonuclease R [Bacillus macauensis ZFHKF-1]
gi|391878471|gb|EIT87060.1| ribonuclease R [Bacillus macauensis ZFHKF-1]
Length = 778
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 159/348 (45%), Gaps = 55/348 (15%)
Query: 164 EKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIH 223
E+ D KDI R+DL + ID ++A +LDDA++ +L++G K+ +H
Sbjct: 234 EEIDPKDIEG-----------RRDLRQETIVTIDGEDAKDLDDAVNVTKLENGNYKLGVH 282
Query: 224 VADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV 283
+AD + Y+ GS D++A++RGTSV+L PM P +L+ SL ++ +
Sbjct: 283 IADVSHYVTEGSPIDEEALERGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEME 342
Query: 284 LHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALR 335
+ G + + + S+I+ +TY + ++L EE + K++ E A +
Sbjct: 343 ITPKGEVIRHDIFPSVIRTVERMTYTNVRKILQDEDEEVNKRYESLIPFFKLMGELAEIL 402
Query: 336 LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY 395
+ R +GAID E ++ V +P + + + +++ A +L+ E M+ E +A +
Sbjct: 403 RKRRFNRGAIDFDFSEAKVIVNESSEP---LEIALRERS-VAEKLIEEFMLCANETVAQH 458
Query: 396 GSFNNLALPYRGQPQSNID--------VSAFAHL-----------------------PEG 424
+L YR + + + +S F ++ PE
Sbjct: 459 FHQADLPFMYRIHEEPDAEKLARFVEFISMFGYVLKDGVTEVHPATLQKLLEEVKGEPEE 518
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V S +++ M+ A F + + H L Y FTSPIRRY DL+ H
Sbjct: 519 MVISKIMLRSMKQAKY-FPESLGHYGLATEFYTHFTSPIRRYPDLIVH 565
>gi|312863307|ref|ZP_07723545.1| ribonuclease R [Streptococcus vestibularis F0396]
gi|311100843|gb|EFQ59048.1| ribonuclease R [Streptococcus vestibularis F0396]
Length = 817
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A+ RGTSV++ PM PE+L+ SL + +T S ++ G + + +
Sbjct: 305 NREAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEITPKGKVVNHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKTKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H +
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMI 575
>gi|337286673|ref|YP_004626146.1| ribonuclease II [Thermodesulfatator indicus DSM 15286]
gi|335359501|gb|AEH45182.1| ribonuclease II [Thermodesulfatator indicus DSM 15286]
Length = 661
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 136/304 (44%), Gaps = 40/304 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLT L ID E + DDA+ ++ D ++V IH+AD + ++ S ++A+
Sbjct: 272 DREDLTELLPVTIDGPETRDFDDAIHFVQ-HDDALEVGIHIADVSAFVPKESPIFREALN 330
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG++++LP PM P ++ E SL G+ A++ + L DG I E+ + S+IK
Sbjct: 331 RGSTIYLPDRIIPMLPRVISEEAASLIAGKERPALSFIIKLSPDGEIKEFRLVRSVIKVA 390
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
LTY+ A L E++ K L + A RL GA+
Sbjct: 391 KRLTYDEADAFL------ESDFKPLYKMAEKLFNRRLAAGALPVYL-------------- 430
Query: 364 PIINLYVED--------QADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV 415
P INL VED + A L+SE MIL A + N + YR QP+ +
Sbjct: 431 PEINLRVEDGHIILERIEITGARFLISEYMILANYVAALFLKENQIPAIYRSQPKPKERL 490
Query: 416 SAFAHLPEGPVRSSAIVKIMRAAAID----FRKPVRHGVLGLPGYVQFTSPIRRYMDLLA 471
+ + M+ + P H LGLP Y TSPIRR +DL+
Sbjct: 491 ISGGE-------QDIFLNFMQLRQLSRGEMLLSPEFHHGLGLPCYTTVTSPIRRVIDLIM 543
Query: 472 HYQV 475
+Q+
Sbjct: 544 EHQL 547
>gi|422326488|ref|ZP_16407516.1| ribonuclease R [Erysipelotrichaceae bacterium 6_1_45]
gi|371666067|gb|EHO31224.1| ribonuclease R [Erysipelotrichaceae bacterium 6_1_45]
Length = 710
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKYIEPGSLS 237
ED++ RKDL L ID ++A +LDDA+S +L++ + ++Y+H+AD + Y+ GS
Sbjct: 232 EDDIAQRKDLRKLLTITIDGEDAKDLDDAISVEKLENNKGYRLYVHIADVSHYVRAGSAI 291
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A RGTSV++ PM P L SL +T + + G I Y +
Sbjct: 292 DQEAYARGTSVYVVDRVVPMLPHALCNGICSLNPRVDRLTLTCCMDIDKKGEIDNYKIYP 351
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE----------LKILSEAAALRLQWRLQQGAIDT 347
SII +TY+ +L + + + E +K+LS R R + GAID
Sbjct: 352 SIICSDERMTYKKVNAILAGDAQSQKEYPHLLNLCLDMKVLSGIIRRR---RERLGAIDF 408
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
T E +I V +P I V + + R++ + MI E +A + + + YR
Sbjct: 409 DTREAKILVDEKGNPTDI----VLRERGESERIIEDFMIAANECVAMHMKWMEVPSMYRI 464
Query: 407 ---GQPQSNIDVSAFAH---------------------LPEGP------VRSSAIVKIMR 436
+P+ D + A L E V SS +++ M+
Sbjct: 465 HEAPEPKKMRDFATTAKSLGYNFQGGIQNVYPAQLQSLLNEARGQENYFVLSSFMLRAMQ 524
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D R + H L L Y+ FTSPIRRY DL+ H
Sbjct: 525 KARYDNR-CIGHFGLALKNYLHFTSPIRRYPDLVVH 559
>gi|212640318|ref|YP_002316838.1| Exoribonuclease R [Anoxybacillus flavithermus WK1]
gi|212561798|gb|ACJ34853.1| Exoribonuclease R [Anoxybacillus flavithermus WK1]
Length = 758
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 151/334 (45%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E+ + R+DL + + ID ++A +LDDA++ +L +G K+ +H+AD + Y+ GS
Sbjct: 236 SEEEIKGRRDLRNEMIVTIDGEDAKDLDDAVTVTKLANGNYKLGVHIADVSHYVTEGSPI 295
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + ++ G + + +
Sbjct: 296 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINDRGEVVSHEIFQ 355
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ +TY +L E E ++++E A + R+++GAID
Sbjct: 356 SVIRTVERMTYSDVNRILVDRDEALREKYAPLVPMFELMAELADILRNKRMKRGAIDFDF 415
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M+ E IA + + N+ YR
Sbjct: 416 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETIAEHFHWMNVPFIYRVHE 471
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 472 DPKPEKLQRFLEFITNFGYIVKGTGNQIHPRALQEVLEAVRGEPEEMVVSTVMLRSMKQA 531
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 532 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 564
>gi|254367317|ref|ZP_04983343.1| ribonuclease R [Francisella tularensis subsp. holarctica 257]
gi|134253133|gb|EBA52227.1| ribonuclease R [Francisella tularensis subsp. holarctica 257]
Length = 750
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 147/340 (43%), Gaps = 45/340 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERS 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKIM-----RAAAIDFRKPV 446
P+R + D AH G V A+ +++ R D R
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAHGKNGKVTPKALAQMLDSIKDRPDYDDIRMMT 543
Query: 447 --------------RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFGLAYSEYTHFTSPIRRYPDLVVH 583
>gi|421212937|ref|ZP_15669898.1| ribonuclease R [Streptococcus pneumoniae 2070108]
gi|421215205|ref|ZP_15672133.1| ribonuclease R [Streptococcus pneumoniae 2070109]
gi|395580524|gb|EJG41005.1| ribonuclease R [Streptococcus pneumoniae 2070108]
gi|395581338|gb|EJG41810.1| ribonuclease R [Streptococcus pneumoniae 2070109]
Length = 784
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERIIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|255531532|ref|YP_003091904.1| ribonuclease R [Pedobacter heparinus DSM 2366]
gi|255344516|gb|ACU03842.1| ribonuclease R [Pedobacter heparinus DSM 2366]
Length = 709
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 44/326 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
RKD + + ID +A + DDA+S L++G ++ +H+AD + Y++P S DK+A R
Sbjct: 255 RKDFRNTTTFTIDPADAKDFDDAISFKTLENGNYEIGVHIADVSHYVKPNSSLDKEAYAR 314
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGE--VCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
TSV+L PM PE+L+ SLR E +C A L ++ ++I
Sbjct: 315 ATSVYLVDRVIPMLPERLSNGVCSLRPNEDKLCFAAVFE--LDEKANLVNEWFGRTVIHS 372
Query: 303 TYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPED 361
+YE A E++ + AE+ L+E A + + + GAI + E + K+
Sbjct: 373 DRRFSYEEAQEVIENKAGDYAAEILKLNELAYILRDKKFKNGAISFESTEVKFKLDETGK 432
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYRGQPQSNI-DV 415
P I +YV+++ D A +L+ + M+L + +A + YR N+ ++
Sbjct: 433 P---IGVYVKERKD-AHKLIEDFMLLANKKVAEFIAKKGKGKQKYTFVYRSHDSPNLENL 488
Query: 416 SAFAHLP--------------------------EGPVRSSAIVKIM---RAAAIDFRKPV 446
FA EG + + ++ A AI K
Sbjct: 489 GNFALFAARFGYKINMKSDKEIAKSLNYLMEDVEGKKEQNVLTQLAIRSMAKAIYTTKKT 548
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY D++ H
Sbjct: 549 SHYGLAFDHYTHFTSPIRRYPDVMVH 574
>gi|418148400|ref|ZP_12785165.1| ribonuclease R [Streptococcus pneumoniae GA13856]
gi|353813075|gb|EHD93308.1| ribonuclease R [Streptococcus pneumoniae GA13856]
Length = 784
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANEIVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|353237501|emb|CCA69472.1| hypothetical protein PIIN_03372 [Piriformospora indica DSM 11827]
Length = 872
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 167/381 (43%), Gaps = 48/381 (12%)
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
D S+ L ++ + R D L V+ ID +A ELDD +S DG V++HVADPT
Sbjct: 398 DTSSLL-SSDPHYDQRHDWGQLPVFVIDSADAHELDDGISVEAQPDGSAWVHVHVADPTS 456
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMS---LRQGEVCNAVTVSVVLHS 286
+ A RG++++ T PM P AM S L +G+ + +T S +
Sbjct: 457 RLPRSHPIALTAASRGSTIYGSQETIPMLPNSYAMTEHSLGALGEGKGQSVLTFSTRVDQ 516
Query: 287 DGSIAEYSVDNSIIKPTYMLTYESATELLHL----------NLEEE-----AELKILSEA 331
G I + V I+ ++LTY+ + L + N+++E +ILSE
Sbjct: 517 QGGIIDSCVRVGIVHNIHVLTYKGVEKSLGIDIPYYTSPFGNVKQEDPGRPVPQEILSEL 576
Query: 332 AAL-RLQWRLQQGAIDTATLETRIKVANPEDPE----------------PIINLYVEDQA 374
AL ++ Q+ D + AN P+ P I VE
Sbjct: 577 KALQKIAENQQKRRFDAGRFSWHVPKANARFPDKPIPASEQIPQLWTGFPTIEYTVEPGI 636
Query: 375 -DPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVK 433
PA +LV++ MIL G+A + + L +R PQ + + HL GPV AI
Sbjct: 637 LSPARQLVAQAMILAGQAAGRFCAERGLPALFRTSPQP-LGLQE-KHLNLGPVVPMAIAL 694
Query: 434 IMRAAAIDFR---KPVRH---GVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGA 487
R A + P H GV G GYV+ TSP+RR+ D++ H+Q+ ++A
Sbjct: 695 KQRVAGVPAYYSVNPSAHWALGVDGEHGYVRVTSPLRRFSDMVMHWQI--KSALLNPASP 752
Query: 488 QIG-DEVEVKVEEAHPRDDII 507
+I DE+E H R+ ++
Sbjct: 753 EISKDEMESYAARLHERERLV 773
>gi|326436223|gb|EGD81793.1| mitotic control protein dis3 [Salpingoeca sp. ATCC 50818]
Length = 1066
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 160/351 (45%), Gaps = 48/351 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
A D+L R+DL HL + ++D ++DDAL A L +G ++ +H+AD T ++ PGS
Sbjct: 445 APDSLAKRRDLRHLNICSVDPPGCTDIDDALHARELDNGNYEIGVHIADVTYFVRPGSAL 504
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KRGT+V+L M P L+ SLR GE A + + + I
Sbjct: 505 DKEAAKRGTTVYLADRRIDMVPGLLSSNLCSLRGGEERFAFSCVWEITKEAEIVSTEFFK 564
Query: 298 SIIKPTYMLTYESATELL---HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
SIIK + Y A + N E L++L+ A + R+++GA+ A+ E R
Sbjct: 565 SIIKSKSAMMYSEAQMRIDDKSDNSELTQSLRVLNSLAKKLRRRRIERGALMLASTEVRF 624
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYR--GQPQ 410
+ N E +P +++ +++Q + +V E M+L + A + F A+ R P
Sbjct: 625 SMDN-ETNDP-VDMKIKEQYE-TNSMVEEFMLLANVSTAEHIFRHFPQCAVLRRHPSPPP 681
Query: 411 SNID----------------------VSAFAHLPEGPVRSSAIVKIMRA----AAIDF-- 442
+N + VS PEG +++++ A+ F
Sbjct: 682 ANFEPLLKAAHVAGVELSTASSKELAVSLDRAAPEGKPYLRTLLRMLATRCMMQAVYFSS 741
Query: 443 ----RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQI 489
+ +H L P Y FTSPIRRY D+L H L AA S+GA I
Sbjct: 742 GTVPQTEFKHYGLASPIYTHFTSPIRRYADVLVHR---LLAA---SIGADI 786
>gi|423527067|ref|ZP_17503512.1| ribonuclease R [Bacillus cereus HuB1-1]
gi|402454230|gb|EJV86023.1| ribonuclease R [Bacillus cereus HuB1-1]
Length = 812
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRNQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|373124508|ref|ZP_09538349.1| ribonuclease R [Erysipelotrichaceae bacterium 21_3]
gi|371659476|gb|EHO24741.1| ribonuclease R [Erysipelotrichaceae bacterium 21_3]
Length = 710
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKYIEPGSLS 237
ED++ RKDL L ID ++A +LDDA+S +L++ + ++Y+H+AD + Y+ GS
Sbjct: 232 EDDIAQRKDLRKLLTITIDGEDAKDLDDAISVEKLENNKGYRLYVHIADVSHYVRAGSAI 291
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A RGTSV++ PM P L SL +T + + G I Y +
Sbjct: 292 DQEAYARGTSVYVVDRVVPMLPHALCNGICSLNPRVDRLTLTCCMDIDKKGEIDNYKIYP 351
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE----------LKILSEAAALRLQWRLQQGAIDT 347
SII +TY+ +L + + + E +K+LS R R + GAID
Sbjct: 352 SIICSDERMTYKKVNAILAGDAQSQKEYPHLLNLCLDMKVLSGIIRRR---RERLGAIDF 408
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
T E +I V +P I V + + R++ + MI E +A + + + YR
Sbjct: 409 DTREAKILVDEKGNPTDI----VLRERGESERIIEDFMIAANECVAMHMKWMEVPSMYRI 464
Query: 407 ---GQPQSNIDVSAFAH---------------------LPEGP------VRSSAIVKIMR 436
+P+ D + A L E V SS +++ M+
Sbjct: 465 HEAPEPKKMRDFATTAKSLGYNFQGGIQNVYPAQLQSLLNEARGQENYFVLSSFMLRAMQ 524
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D R + H L L Y+ FTSPIRRY DL+ H
Sbjct: 525 KARYDNR-CIGHFGLALKNYLHFTSPIRRYPDLVVH 559
>gi|169834018|ref|YP_001694420.1| ribonuclease R [Streptococcus pneumoniae Hungary19A-6]
gi|168996520|gb|ACA37132.1| ribonuclease R [Streptococcus pneumoniae Hungary19A-6]
Length = 784
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERIIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|116512070|ref|YP_809286.1| exoribonuclease R [Lactococcus lactis subsp. cremoris SK11]
gi|116107724|gb|ABJ72864.1| RNAse R [Lactococcus lactis subsp. cremoris SK11]
Length = 667
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 147/336 (43%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L R+D + Y ID +++ +LDDA+ +L +G ++ +H+AD + Y+ GS
Sbjct: 195 TQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVHIADVSHYVTEGSSL 254
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
+++A R TSV++ PM P +L+ SL E +T+S ++ D G I Y +
Sbjct: 255 NEEAYARATSVYVTDRVVPMLPVRLSNNLCSL--NEAQERLTMSCLMEIDDKGKIVTYKI 312
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-LKILSEAA-----ALRLQ-----WRLQQGA 344
S+IK TY +TY + +++H E E L+ S+ A A+ L R +G
Sbjct: 313 SPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKFSKIADSIEVAVELHEILETMRKDRGM 372
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I+ E +I + + P I V+ D A R++ M++ E +A F LP
Sbjct: 373 IEFDESEAKIILDDEGHPIEI----VKRDRDTAERMIESFMLMANETVAL--DFQKKKLP 426
Query: 405 YRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF---------------------- 442
+ AFA L E + + AI+F
Sbjct: 427 SLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKGTSFEKALTYQLRHTM 486
Query: 443 ------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K +H L Y FTSPIRRY DL+ H
Sbjct: 487 STAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 522
>gi|343510605|ref|ZP_08747828.1| exoribonuclease II [Vibrio scophthalmi LMG 19158]
gi|342801574|gb|EGU37034.1| exoribonuclease II [Vibrio scophthalmi LMG 19158]
Length = 672
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 121/439 (27%), Positives = 188/439 (42%), Gaps = 63/439 (14%)
Query: 88 RVFAKVKVSSGELLEDKLENQVLQKGLLLEFKK--------DSDRVLLAVAQRP-DGKKN 138
R +VK+ G+L Q+ ++ L + KK + D V+ + Q P G
Sbjct: 85 RFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVKKGLNPTDFAEGDWVVAHLVQHPLKGDAG 144
Query: 139 WMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYA 195
++V A I P VT + + I ++ K +D L R D+TH+
Sbjct: 145 FLVEISKKITDADDKIAPWWVTLAENDLPNSEPAGIDHWELK-DDADLERVDMTHVPFVT 203
Query: 196 IDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATY 255
ID ++DDAL A + +G ++ I +ADPT YI P S DK A +RG +++LP
Sbjct: 204 IDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYITPDSDMDKVARERGFTIYLPGRNI 263
Query: 256 PMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNSIIKPTYMLTYESATEL 314
PM P LA + SL +GEV A+ +V + DG I E + IK L Y+ ++
Sbjct: 264 PMLPRDLADDLCSLIEGEVRPALCCTVTVDKDGVIGEDIHFFAAHIKSHARLVYDHVSDW 323
Query: 315 LHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPII 366
L E + ++ L E + R WR + + R +++ D ++
Sbjct: 324 LENGESPEWQPNDEIAQIVRDLYEFSQARANWRQNNAVVFPDRPDYRFELSEDND---VV 380
Query: 367 NLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
++ D A RLV E MI +C A G FN A +P+ DV A
Sbjct: 381 AIHA-DMRRTANRLVEESMITANICAGKTLRANFECGVFNTHA---GFKPEKIADVVALV 436
Query: 420 HLPEG--PVRSSAIVKIMRAAA------------IDFR------------KPVRHGVLGL 453
+ PEG P + +I + AA +D R +P+ H +GL
Sbjct: 437 N-PEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAYSEMGNQPLPHYAMGL 495
Query: 454 PGYVQFTSPIRRYMDLLAH 472
Y +TSPIR+Y D++ H
Sbjct: 496 DIYATWTSPIRKYGDMINH 514
>gi|239618067|ref|YP_002941389.1| ribonuclease R [Kosmotoga olearia TBF 19.5.1]
gi|239506898|gb|ACR80385.1| ribonuclease R [Kosmotoga olearia TBF 19.5.1]
Length = 732
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 157/331 (47%), Gaps = 49/331 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKD +++ ID ++A + DDA+S +L++G + +H+AD + Y+ GS D++A +
Sbjct: 244 KRKDYRKDRIFTIDGEDAKDYDDAISIKKLKNGNYLLGVHIADVSHYVREGSALDREAYE 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P +L+ SL +GE +++ + + G + ++ V +I+
Sbjct: 304 RGTSVYLLDTVIPMLPFELSNGICSLVEGEDRLTLSLEMEIDPGGKVVDFKVHEGVIRSV 363
Query: 304 YMLTYESATELLHLNLEEE---------AELKILSEAAALRLQWRLQQGAI-DTATLETR 353
LTY L+ + + + EL + E A + WR ++G++ D ++ E +
Sbjct: 364 RRLTYTEVNRFLNGDNDPDLLKHLEPVKKELLVARELARILRDWRKKRGSVMDISSREVK 423
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY------RG 407
I ++ ++++ +++ + + ++ E MI E IA FN +P+ +
Sbjct: 424 ILF---DEKGRVVDILPQERGESEI-MIEEFMIKANETIAEI--FNTQDIPFVYRIHEKP 477
Query: 408 QPQSNIDVSAFAH-------LPEG----------------PVRSS---AIVKIMRAAAID 441
P+S I + + +P+ P+ SS +V+ M+ A
Sbjct: 478 DPESIIQLKHYLEAIGMKLRIPKNIHPKVLQEILEKTKDHPLHSSIERILVRSMKRAVYS 537
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
R + H L Y FTSPIRRY DL+ H
Sbjct: 538 ERN-IGHFGLASQAYTHFTSPIRRYPDLIVH 567
>gi|291001707|ref|XP_002683420.1| exosome complex exonuclease RRP44 [Naegleria gruberi]
gi|284097049|gb|EFC50676.1| exosome complex exonuclease RRP44 [Naegleria gruberi]
Length = 1053
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 97/347 (27%), Positives = 160/347 (46%), Gaps = 53/347 (15%)
Query: 176 QKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGS 235
Q E ++ R+DL HL + ++D ++DDAL A++L DG I++ +H+AD T +++ G+
Sbjct: 507 QPTEKDMERRRDLRHLNIVSVDPPGCTDIDDALHAIQLPDGSIEIGVHIADVTNFVKEGT 566
Query: 236 LSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSV 295
D +A KRGT+V+L M P L SLRQ A +V +G I
Sbjct: 567 AIDIEAAKRGTTVYLVDRRIEMLPSLLTNNLCSLRQHVDRLAFSVIWKFSPEGDIKSVDY 626
Query: 296 DNSIIKPTYMLTYESATELL---HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
S+I+ +TYE A +++ + E +L++L + + + + R + G++ A+
Sbjct: 627 TKSLIRSRKSMTYEEAQKVIDDKERDDELATDLRLLMQISKILKKKRNEAGSLTLASPAV 686
Query: 353 RIKV----ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLALPYR 406
+ + +NP D E LY Q +V E M+L A+A F +A R
Sbjct: 687 KFSMEAESSNPTDVE----LY---QLRETNSMVEEFMLLANIAVAKKITKEFPMVACLRR 739
Query: 407 GQPQS----------------NIDVSAFAHLPE--GPVRSSAIVK-----------IMRA 437
P + N+D+S+ L E +RSS ++K + R
Sbjct: 740 HPPVNPKKFEPLLEMLKRHGINLDISSSKILNETLSNIRSSGLIKDKYMDTLVRIMVTRC 799
Query: 438 --AAIDF------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
A+ F ++ H L +P Y FTSPIRRY D++ H +G
Sbjct: 800 MEQAVYFISGDCSQEEYWHYGLAVPIYTHFTSPIRRYADVIVHRLLG 846
>gi|408357188|ref|YP_006845719.1| ribonuclease R [Amphibacillus xylanus NBRC 15112]
gi|407727959|dbj|BAM47957.1| ribonuclease R [Amphibacillus xylanus NBRC 15112]
Length = 755
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 155/333 (46%), Gaps = 50/333 (15%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
L NR+DL ++ ID +A +LDDA+S +L +G ++ ++++D + Y++ S DK+A
Sbjct: 246 LENRRDLRDKQIVTIDGADAKDLDDAISVEKLSNGNYRLGVYISDVSYYVDKDSPMDKEA 305
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
RGTSV+L PM P +L+ SL GE + + + +G + + + S+I
Sbjct: 306 YSRGTSVYLVDRVIPMLPHRLSNGICSLNPGEDRLTLGCEMEIDHNGHVVSHDIFQSVIN 365
Query: 302 PTYMLTYESATELLHLNLEEEAELK-----------ILSEAAALRLQWRLQQGAIDTATL 350
+ +TY+ ++L ++++ EL+ + + A + + R +GAID
Sbjct: 366 SSARMTYKEVNQIL---VDQDEELRQQYVEFVPLFEAMEDLAEILRKKRFGRGAIDFNFK 422
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR---- 406
E ++ V + P I++ + +++ A RL+ E M++ E +A + + L YR
Sbjct: 423 EAQVIVDDTGHP---IDVVIRERS-VAERLIEEFMLIANETVAEHFHWMELPFIYRIHED 478
Query: 407 -------------GQPQSNIDVSAFAHLP--------------EGPVRSSAIVKIMRAAA 439
GQ + +A P E V S +++ ++ A
Sbjct: 479 PDEEKLKNFYQFLGQFGYQVKGTANEVHPQALQQVLDLVKGEQEEMVISKLLLRSLKQAK 538
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
DF + H L Y FT+PIRRY DL+ H
Sbjct: 539 YDF-NSIGHFGLATKFYTHFTAPIRRYPDLIVH 570
>gi|313900453|ref|ZP_07833946.1| ribonuclease R [Clostridium sp. HGF2]
gi|312954515|gb|EFR36190.1| ribonuclease R [Clostridium sp. HGF2]
Length = 710
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 151/336 (44%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR-IKVYIHVADPTKYIEPGSLS 237
ED++ RKDL L ID ++A +LDDA+S +L++ + ++Y+H+AD + Y+ GS
Sbjct: 232 EDDIAQRKDLRKLLTITIDGEDAKDLDDAISVEKLENNKGYRLYVHIADVSHYVRAGSAI 291
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A RGTSV++ PM P L SL +T + + G I Y +
Sbjct: 292 DQEAYARGTSVYVVDRVVPMLPHALCNGICSLNPRVDRLTLTCCMDIDKKGEIDNYKIYP 351
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE----------LKILSEAAALRLQWRLQQGAIDT 347
SII +TY+ +L + + + E +K+LS R R + GAID
Sbjct: 352 SIICSDERMTYKKVNAILAGDAQSQKEYPHLLNLCLNMKVLSGIIRRR---RERLGAIDF 408
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR- 406
T E +I V +P I V + + R++ + MI E +A + + + YR
Sbjct: 409 DTREAKILVDEKGNPTDI----VLRERGESERIIEDFMIAANECVAMHMKWMEVPSMYRI 464
Query: 407 ---GQPQSNIDVSAFAH---------------------LPEGP------VRSSAIVKIMR 436
+P+ D + A L E V SS +++ M+
Sbjct: 465 HEAPEPKKMRDFATTAKSLGYNFQGGIQNVYPAQLQSLLNEARGQENYFVLSSFMLRAMQ 524
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D R + H L L Y+ FTSPIRRY DL+ H
Sbjct: 525 KARYDNR-CIGHFGLALKNYLHFTSPIRRYPDLVVH 559
>gi|423386606|ref|ZP_17363861.1| ribonuclease R [Bacillus cereus BAG1X1-2]
gi|401632027|gb|EJS49817.1| ribonuclease R [Bacillus cereus BAG1X1-2]
Length = 810
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRNQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|218296600|ref|ZP_03497318.1| ribonuclease R [Thermus aquaticus Y51MC23]
gi|218242913|gb|EED09446.1| ribonuclease R [Thermus aquaticus Y51MC23]
Length = 737
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 157/325 (48%), Gaps = 36/325 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ L R+D L+V+ ID +A + DDA+ RL G +V +H+AD + Y++ GSL D
Sbjct: 220 EEELRRRQDFRALRVFTIDGVDAKDFDDAIHIERLPKG-YRVGVHIADVSFYVKEGSLLD 278
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGTSV+LP PM PE+L+ SLR GE ++V V L D +
Sbjct: 279 QEAFLRGTSVYLPGRVLPMLPERLSNGVCSLRPGEDRLVLSVLVDLGEDLEVKRVRFAEG 338
Query: 299 IIKPTYMLTY---ESATELL-----HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+I+ LTY E+ E H L E +L +L + + RL++G++D +
Sbjct: 339 VIRSVARLTYTEVEAFAEGFGLPEAHAFLAE--DLSLLLDLTQRMREKRLKEGSLDFSFP 396
Query: 351 ETRIKVAN------PEDPEPIINLYVEDQADPAMRLVSEMMILCG---------EAI-AT 394
E +++V P++ EP +E+ A RLV+E ++ G E +
Sbjct: 397 EVKVEVEGGTLRLIPQE-EPRARSLIEELMLLANRLVAEHLVKRGLPGLFRVHEEPLEEA 455
Query: 395 YGSFN------NLALPYRGQPQSNIDVSAFAH-LPEGPVRSSAIVKIMRAAAIDFRKPVR 447
YG LP + ++ V A PE PV ++ +++ +R A +
Sbjct: 456 YGKLRQALQRLGYTLPEKVSAKALQKVLLEAKGRPEEPVVANLVLRSLRLARYAPEN-LG 514
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L + Y+ FTSPIRRY DL+ H
Sbjct: 515 HFGLAMEHYLHFTSPIRRYPDLVVH 539
>gi|406946623|gb|EKD77766.1| hypothetical protein ACD_42C00189G0003 [uncultured bacterium]
Length = 746
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 147/329 (44%), Gaps = 53/329 (16%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL +L ID ++A + DDA+ L +V+I +AD Y+ P S DK+A R
Sbjct: 292 RRDLRNLHFVTIDGEDAKDFDDAVYCEPLSKNHWRVWIAIADVAHYVTPHSALDKEAHSR 351
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTV--SVVLHSDGSIAEYSVDNSIIKP 302
G SV+ P PM PEKL+ + SLR C+ +T+ + +++DG + +Y DN+II
Sbjct: 352 GNSVYFPARVIPMLPEKLSNDLCSLRPH--CDRLTMVCEMEINADGVVQKYQFDNAIIHS 409
Query: 303 TYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY + +L E E LK L L+ R +GAI+ T ET+I
Sbjct: 410 KARLTYTTVAAIL---AETEVADTVLTMHLKNLHHLFQTLLRQRELRGAIEFETTETQII 466
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR----GQPQS 411
I+ V + A R++ E+M++ E A Y ++ YR +P+
Sbjct: 467 FGQGGK----IDSIVPRLRNVAHRIIEELMLVANETTAKYIKKADIPALYRVHDFPEPEK 522
Query: 412 NIDVSAF--------------------------AHLPEGPVRSSAIVKIMRAA--AIDFR 443
++ F + P+ + + +++ +R A + D R
Sbjct: 523 LSNLRDFLKSFSLRLPGGDQPTPGDYAKLLERVSKRPDAHLIQTVMLRSLRQAIYSSDDR 582
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRRY DLL H
Sbjct: 583 G---HFGLSYETYCHFTSPIRRYPDLLVH 608
>gi|206976639|ref|ZP_03237544.1| ribonuclease R [Bacillus cereus H3081.97]
gi|206745125|gb|EDZ56527.1| ribonuclease R [Bacillus cereus H3081.97]
Length = 806
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELNKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|152977348|ref|YP_001376865.1| ribonuclease R [Bacillus cytotoxicus NVH 391-98]
gi|152026100|gb|ABS23870.1| ribonuclease R [Bacillus cytotoxicus NVH 391-98]
Length = 792
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 158/334 (47%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y+ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVHEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + ++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINHLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE E K ++E A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELMERYKPLVPMFKEMAELAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---LRDRS-ISEKLIEEFMLVANETVAEHFHWMNVPFMYRIHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ D V+ F + PE PV S+ +++ M+ A
Sbjct: 481 EPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEPVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY D + H
Sbjct: 541 RYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|424665659|ref|ZP_18102695.1| ribonuclease R [Bacteroides fragilis HMW 616]
gi|404573912|gb|EKA78663.1| ribonuclease R [Bacteroides fragilis HMW 616]
Length = 714
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 43/326 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+DG +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + + +++I+
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALPYR----GQPQ---- 410
I++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKAPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ DVS + HL E + + ++ M+ A +
Sbjct: 495 LAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRR+ D++ H
Sbjct: 554 GHYGLAFDFYTHFTSPIRRFPDMMVH 579
>gi|423375326|ref|ZP_17352663.1| ribonuclease R [Bacillus cereus AND1407]
gi|401092285|gb|EJQ00415.1| ribonuclease R [Bacillus cereus AND1407]
Length = 806
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAKILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY D + H
Sbjct: 541 RYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|220932409|ref|YP_002509317.1| ribonuclease R [Halothermothrix orenii H 168]
gi|219993719|gb|ACL70322.1| ribonuclease R [Halothermothrix orenii H 168]
Length = 706
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 45/338 (13%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ ++ +L R+DL + + ID +A +LDDA+S + D ++++ +H+AD + Y++
Sbjct: 234 LEISKGDLKGRRDLRAMPMVTIDGADAKDLDDAVSIEEVDDNQVRLGVHIADVSHYVKED 293
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSL--RQGEVCNAVTVSVVLHSDGSIAE 292
S D++A+KRGTS++L PM PE+L+ SL Q + +V ++ L + E
Sbjct: 294 SALDREALKRGTSIYLVDRVIPMLPERLSNGICSLNPNQDRLTMSVFITYQLEP-FKLME 352
Query: 293 YSVDNSIIKPTYMLTYESATELL-HLN---LEEEAE----LKILSEAAALRLQWRLQQGA 344
Y + S+IK Y LTY+ E+L H N +++ + LK++++ + R+ +G+
Sbjct: 353 YEIVPSVIKTNYRLTYDEVREILVHKNKAAIQKYRDFVPYLKLMNKLRKRLREERVARGS 412
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
ID E ++ + P IIN P +L+ E MI +A + +
Sbjct: 413 IDFDMPEVKVILNEDGKPVDIINRV---HGIPE-QLIEEFMIAANRVVAEDMYWRQIPFI 468
Query: 405 YRGQPQSN----IDVSAFAH-----------------------LPEGPVRSSAIVKIMRA 437
YR Q + D + F H L EG I +I+
Sbjct: 469 YRVHDQPDHGRMADFNEFIHNFGYHLKGVNNEIHPRELQELLQLVEGRPEERLITRILLR 528
Query: 438 A---AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ + + H L L Y FTSPIRRY DL+ H
Sbjct: 529 SMKQAVYSDQNIGHFGLALDYYTHFTSPIRRYPDLMIH 566
>gi|417948597|ref|ZP_12591741.1| exoribonuclease II [Vibrio splendidus ATCC 33789]
gi|342809544|gb|EGU44661.1| exoribonuclease II [Vibrio splendidus ATCC 33789]
Length = 668
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 116/428 (27%), Positives = 183/428 (42%), Gaps = 50/428 (11%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKF 166
QKGL E K+ D V+ + Q P N + + A I P VT +
Sbjct: 116 QKGLNPETLKEGDWVVAHIIQHPLKGDNGFLAQISEKITDAHDKIAPWWVTLAQNDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ + I N+ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +AD
Sbjct: 176 EPEGIDNW-QINDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA SL + EV A+ +V +
Sbjct: 235 PTAYISPDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSK 294
Query: 287 DGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQ 337
DG I + + IK L Y++ ++ L E+ A + L E A R
Sbjct: 295 DGVIGDDIKFFAANIKSHARLAYDNVSDWLETGASEKWQPSEEIAAIVSDLHEFAQARSA 354
Query: 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIA- 393
WR + + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 355 WRSANAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLK 410
Query: 394 ---TYGSFN--------------NLALPYRGQPQSN---IDVSAFAHLPE--GPVRSSAI 431
G FN L P P + + + FA L G + S+
Sbjct: 411 ESFNQGVFNCHSGFKAEKVADVLELVNPQAETPFTEEQIVSLEGFAALRRWLGSLDSNYY 470
Query: 432 ---VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG---LQAAAWVSV 485
++ +A + +P H +GL Y +TSPIR+Y D++ H + L A +
Sbjct: 471 DNRIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAPIQTP 530
Query: 486 GAQIGDEV 493
IGDE+
Sbjct: 531 DETIGDEL 538
>gi|328956762|ref|YP_004374148.1| ribonuclease R [Carnobacterium sp. 17-4]
gi|328673086|gb|AEB29132.1| ribonuclease R [Carnobacterium sp. 17-4]
Length = 787
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 150/335 (44%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+DL + + ID ++A +LDDA+ L +G ++ +H+AD + Y+ S D
Sbjct: 255 ESDFEGRRDLRNEVLVTIDGEDAKDLDDAVGLKLLDNGNYQLGVHIADVSYYVTEDSPLD 314
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVD 296
KDA +RGTSV+L PM P++L+ SL + +T+S + L DG I +
Sbjct: 315 KDAFERGTSVYLTDRVIPMIPQRLSNGICSLNPH--VDRLTMSCLMELTPDGEIVGQDIF 372
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTA 348
S+I+ T +TY E+L E E +++ + R +GAID
Sbjct: 373 QSVIRTTERMTYTEVNEILTDKNPETREKYSSLVDMFELMENLHHTLEKKRKSRGAIDFD 432
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
T E +I V DPE V + RL+ M+ E ++ + S + L YR
Sbjct: 433 TKEAKIIV----DPEGKPLDIVLRERGVGERLIESFMLAANETVSEHFSKMEVPLIYRIH 488
Query: 409 PQSNID--------VSAFA-----------------------HLPEGPVRSSAIVKIMRA 437
Q + D V+AF PE V S+ +++ M+
Sbjct: 489 EQPDSDRMQKFMEFVTAFGITVKGTSQDVSPKTLQTVVNSVKGKPEEQVVSTMMLRSMKQ 548
Query: 438 AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D +P+ H LG Y FTSPIRRY DL+ H
Sbjct: 549 AKYDV-EPLGHFGLGAEFYSHFTSPIRRYPDLILH 582
>gi|217962598|ref|YP_002341170.1| ribonuclease R [Bacillus cereus AH187]
gi|229141851|ref|ZP_04270378.1| Ribonuclease R [Bacillus cereus BDRD-ST26]
gi|375287121|ref|YP_005107560.1| ribonuclease R [Bacillus cereus NC7401]
gi|423355607|ref|ZP_17333231.1| ribonuclease R [Bacillus cereus IS075]
gi|423572277|ref|ZP_17548487.1| ribonuclease R [Bacillus cereus MSX-A12]
gi|217066634|gb|ACJ80884.1| ribonuclease R [Bacillus cereus AH187]
gi|228641607|gb|EEK97911.1| Ribonuclease R [Bacillus cereus BDRD-ST26]
gi|358355648|dbj|BAL20820.1| ribonuclease R [Bacillus cereus NC7401]
gi|401082670|gb|EJP90936.1| ribonuclease R [Bacillus cereus IS075]
gi|401198089|gb|EJR05011.1| ribonuclease R [Bacillus cereus MSX-A12]
Length = 806
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELNKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|418202247|ref|ZP_12838677.1| ribonuclease R [Streptococcus pneumoniae GA52306]
gi|353868050|gb|EHE47940.1| ribonuclease R [Streptococcus pneumoniae GA52306]
Length = 784
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 158/335 (47%), Gaps = 53/335 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
ED L R ++T + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS D
Sbjct: 248 EDRLELRDEIT----FTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSALD 303
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVD 296
K+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 304 KEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTIT 361
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTAT 349
++IK ++ +TY ++L + E+ + ++++++ R+++GA++ T
Sbjct: 362 QTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFDT 421
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY---- 405
E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 422 NEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYRI 475
Query: 406 RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV---------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 476 HEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSMQ 535
Query: 447 -------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 536 QARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|417937503|ref|ZP_12580803.1| ribonuclease R [Streptococcus infantis SK970]
gi|343391767|gb|EGV04340.1| ribonuclease R [Streptococcus infantis SK970]
Length = 780
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 158/339 (46%), Gaps = 49/339 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL + ID +A +LDDA+ L++G I++ +H+AD + Y+ G+
Sbjct: 243 SEKDMEGRLDLRDEITFTIDGVDAKDLDDAVHIKPLKNGNIELGVHIADVSYYVTEGTAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + K + + L + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQDYKKIVPSIELMAKLHETLESMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKKGKPVDIVLRH----RGVAERMIESFMLIANETVAEH--FSKLELPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H +
Sbjct: 535 QQARYSEHNHGHYGLATDYYTHFTSPIRRYPDLLVHRMI 573
>gi|384182948|ref|YP_005568710.1| ribonuclease R [Bacillus thuringiensis serovar finitimus YBT-020]
gi|324329032|gb|ADY24292.1| ribonuclease R [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 808
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|429219271|ref|YP_007180915.1| exoribonuclease R [Deinococcus peraridilitoris DSM 19664]
gi|429130134|gb|AFZ67149.1| exoribonuclease R [Deinococcus peraridilitoris DSM 19664]
Length = 618
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 146/301 (48%), Gaps = 30/301 (9%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRL--QDGRI--KVYIHVADPTKYIEPGSLSDK 239
R DL+HL AID + + + DDALS RL ++G ++++HVAD + P D+
Sbjct: 229 ERLDLSHLSALAIDDEGSSDPDDALSLERLVLENGEAGWRLWVHVADAAALVAPDGEIDR 288
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A KRG +++LP T PM PE + + + L + A++++V L + V +
Sbjct: 289 EARKRGATLYLPETTVPMLPEPITGQ-LGLGLADTSPALSIAVQLSAAFEPQGAEVHLTR 347
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ---GAIDTATLETRIKV 356
I+ T LTY A L + + L E AAL + R ++ GA+ E R++V
Sbjct: 348 IRVTR-LTYAEAQRAL-----DAGQPGPLQELAALAVTARTRREAAGAVMLELPEVRVRV 401
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ--PQSNID 414
D E II Q + +V E M+L GE++AT+ +L LP+ Q P + ++
Sbjct: 402 ---RDGEVIITPLPPLQ---SRAVVQEAMMLAGESVATWAQQRDLPLPFAAQDPPLARVE 455
Query: 415 VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQ 474
A A K + R RH LGL Y Q TSP+RRY+DL+ H Q
Sbjct: 456 GEQLAQ-------QWARRKSLSRTRFSPRA-GRHAGLGLQAYAQATSPLRRYLDLVVHQQ 507
Query: 475 V 475
+
Sbjct: 508 L 508
>gi|423281396|ref|ZP_17260307.1| ribonuclease R [Bacteroides fragilis HMW 610]
gi|404583100|gb|EKA87783.1| ribonuclease R [Bacteroides fragilis HMW 610]
Length = 714
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 43/326 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+DG +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRPLKDGLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A + + G + + + +++I+
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSAIFDITEKGEVRDSRIVHTVIESDR 378
Query: 305 MLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKEGDFKDEILMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIA-----TYGSFNNLALPYR----GQPQ---- 410
I++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --ISVYFKESKD-ANKLVEEFMLLANRTVAEKIGKAPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ DVS + HL E + + ++ M+ A +
Sbjct: 495 LAQFIARFGYRLRTSGTKTDVSKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRR+ D++ H
Sbjct: 554 GHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|222098566|ref|YP_002532624.1| ribonuclease r [Bacillus cereus Q1]
gi|221242625|gb|ACM15335.1| ribonuclease R [Bacillus cereus Q1]
Length = 791
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 157/334 (47%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 230 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 290 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 349
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 350 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAKILREKRMRRGAIDFDF 409
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 410 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 465
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 466 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 525
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + + H L Y FTSPIRRY D + H
Sbjct: 526 RYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 558
>gi|116873813|ref|YP_850594.1| ribonuclease R [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742691|emb|CAK21815.1| ribonuclease R, putative [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 793
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 145/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + DG + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTISCEMEIDQDGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEVLREKYAPIVPMLEAMQHLAEILRHKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|225867075|ref|YP_002752453.1| ribonuclease R [Bacillus cereus 03BB102]
gi|229187338|ref|ZP_04314481.1| Ribonuclease R [Bacillus cereus BGSC 6E1]
gi|225790827|gb|ACO31044.1| ribonuclease R [Bacillus cereus 03BB102]
gi|228596042|gb|EEK53719.1| Ribonuclease R [Bacillus cereus BGSC 6E1]
Length = 812
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|399516611|ref|ZP_10758208.1| 3'-to-5' exoribonuclease RNase R [Leuconostoc pseudomesenteroides
4882]
gi|398648520|emb|CCJ66235.1| 3'-to-5' exoribonuclease RNase R [Leuconostoc pseudomesenteroides
4882]
Length = 774
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 45/343 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+T + ID + ++DDA+ A +L +G + +H+AD + Y+ GS D++A R
Sbjct: 254 REDITEQTLVTIDGADTKDIDDAVVAWKLDNGNYHLGVHIADVSHYVTEGSSIDREAYNR 313
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P ++ SL V A++ + ++ G + + + S++K
Sbjct: 314 GTSVYLTDRVIPMLPRNISNGIASLNPNVVRLAMSAEMEINPQGKVVNHRLHTSVMKSHA 373
Query: 305 MLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY++ ++L ++ EE A L K++ E + R Q+GAI+ E +I V
Sbjct: 374 RMTYDAVNKILEGDVFVQEEYANLVPMFKVMGELHDILYNMRKQRGAIEFDAPEAQIIV- 432
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-- 415
+D +++ + ++ A R++ M+ E +A + F+ L +P+ + D
Sbjct: 433 --DDEGKAVDIKLRERG-TAERMIESFMLAANETVAEH--FDKLEVPFLYRIHETPDAER 487
Query: 416 --------SAFAHLPEG-PVRSSAIV--KIMRAAAIDFRK-------------------P 445
A H G P + + I+ K+M A D + P
Sbjct: 488 AKSFFEFSKALGHPVIGDPNKVTPIMLQKLMNDVAGDPAEQMISTMMLRAMKQAKYSPDP 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
V H LG Y FTSPIRRY DL H + A V AQ
Sbjct: 548 VGHFGLGADFYTHFTSPIRRYPDLTVHRLIKWYAQNGYGVSAQ 590
>gi|365852652|ref|ZP_09393024.1| ribonuclease R [Lactobacillus parafarraginis F0439]
gi|363714476|gb|EHL97982.1| ribonuclease R [Lactobacillus parafarraginis F0439]
Length = 780
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 158/330 (47%), Gaps = 46/330 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R+D+T + ID + + +LDDA++ +L +G + +H+AD + Y++PGS DK+A
Sbjct: 253 VGREDITDQDLVTIDGESSKDLDDAVTVWKLPNGNYHLGVHIADVSHYVQPGSAIDKEAF 312
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSV+L PM P +L+ SL +GE+ ++ + + G++ ++ + S+++
Sbjct: 313 RRGTSVYLTDRVIPMLPRRLSNGICSLNEGELRLCMSCDMEIDQSGNVIKHRIHPSLMRS 372
Query: 303 TYMLTYESATELLHLN----LEEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRI 354
+TY + ++L + ++E +L + + E + + R +GAID E I
Sbjct: 373 KARMTYTAVNKILESHDQKTMDEYKDLVPMFEQMGELHRILYKHRHARGAIDFDDNEAEI 432
Query: 355 KVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
V E PI I L V A+ +++ M+ E +A + S ++ YR Q +
Sbjct: 433 IV--DEKGHPIDIKLRVRGLAE---KMIESFMLAANETVARHYSEKHVPFIYRVHEQPDA 487
Query: 414 D--------VSAFA--------HL---------------PEGPVRSSAIVKIMRAAAIDF 442
D ++AF H+ PE + S +++ ++ A
Sbjct: 488 DRIKTFFETLTAFGITVKGDPEHIQPKTLQNILKKVAGKPEETMVSVMLLRSLKQARY-A 546
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L P Y FTSPIRRY D + H
Sbjct: 547 DQSLGHFGLAAPFYTHFTSPIRRYPDTMVH 576
>gi|347525129|ref|YP_004831877.1| ribonuclease R 1 [Lactobacillus ruminis ATCC 27782]
gi|345284088|gb|AEN77941.1| Ribonuclease R 1 [Lactobacillus ruminis ATCC 27782]
Length = 791
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 161/350 (46%), Gaps = 44/350 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+D+ ++ ID E+ +LDDA++A +L +G + +H+AD + Y+ PG+
Sbjct: 254 TEEEMKGRRDIRDQQLVTIDAIESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVTPGTPL 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A RGTSV+L PM P KL+ SL A++ + + +G I + +
Sbjct: 314 DDEAFSRGTSVYLTDRVIPMLPAKLSNGICSLNPKVDRLALSCDMEITPEGEIIAHEIYP 373
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY + ++L + E+ E + + E + L+ R ++GAI+
Sbjct: 374 SVIKTTERMTYIAINKILESHDEKTMERYKDLVPMFETMGELHKILLKMRKRRGAIEFEE 433
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
E +I V ++ I++ + ++ + R+V M+ E +A + + N+ YR
Sbjct: 434 NEAKIIV---DEKGHAIDIELRERG-TSERMVESFMLAANETVAAHFNKANVPFLYRIHE 489
Query: 408 QPQS-------------NIDVSAFAH----------------LPEGPVRSSAIVKIMRAA 438
P+ ++V+ H PE V S +++ M+ A
Sbjct: 490 TPKEEKIKRFFELLSAIGVEVTGSTHDITPKMLQNILKKVAGRPEEAVVSVMLLRSMQQA 549
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+P+ H + Y FTSPIRRY DL+ H A +S +Q
Sbjct: 550 KYS-PEPLGHFGIAATDYTHFTSPIRRYPDLMVHRMAHYYAEHGLSEDSQ 598
>gi|89898573|ref|YP_515683.1| ribonuclease R [Chlamydophila felis Fe/C-56]
gi|89331945|dbj|BAE81538.1| ribonuclease R [Chlamydophila felis Fe/C-56]
Length = 676
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 149/339 (43%), Gaps = 42/339 (12%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ ++F QK L +RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 189 EETNHFSQKHIAQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDHNDNYILGVHIADV 248
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V +
Sbjct: 249 SHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAVSVFMTFTKS 308
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G ++ Y + S+I+ Y +TY+ E++ N + K L A L ++ R ++G
Sbjct: 309 GHLSNYEIFRSVIRSKYRMTYDEVDEIVE-NKQPHPISKTLLAMAELSEKFADIREKRGC 367
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E + + +L+ E M+ E IA + S +LP
Sbjct: 368 IRLILPSFTMALDNLQEPTALI----ETRQTLSHKLIEEFMLKANEVIAYHISHQGFSLP 423
Query: 405 YRGQPQSN-------------------------------IDVSAFAHLPEGPVRSSAIVK 433
+R N + S+ H P P+ S V+
Sbjct: 424 FRIHESPNDESLLSFQEMAKAMGFDIIMTPTQEPDYQYLLQESSSGH-PLEPILHSQFVR 482
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 SMKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLVVH 520
>gi|423573223|ref|ZP_17549342.1| ribonuclease R [Bacillus cereus MSX-D12]
gi|401215229|gb|EJR21947.1| ribonuclease R [Bacillus cereus MSX-D12]
Length = 806
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|332687037|ref|YP_004456811.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius ATCC
35311]
gi|332371046|dbj|BAK22002.1| 3'-to-5' exoribonuclease RNase R [Melissococcus plutonius ATCC
35311]
Length = 784
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 50/344 (14%)
Query: 172 SNFLQK--AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+N+L E+ LLNRKDL ++ ID ++A +LDDA++ +L +G + +H+AD +
Sbjct: 245 ANYLSDNFTEEELLNRKDLRDQQIVTIDGEDAKDLDDAVTVKKLNNGNYYLGVHIADVSH 304
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y++ GS DK+A +RGTSV+L PM P++L+ + SL + + ++ G
Sbjct: 305 YVKEGSFIDKEAYERGTSVYLIDRVIPMIPQRLSNDICSLNPKVPRLTLGCEMEINHQGK 364
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEE-----EAELKILSEAAALRL---QWRLQ 341
+ + + S+I+ +TY + E+L + ++ + + E L L R Q
Sbjct: 365 VVHHEIFPSVIQTAERMTYTAVNEILEDQNTQTMRHYQSLVPMFKEMQELHLILSTMREQ 424
Query: 342 QGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNL 401
+GA+ E+RI V +P+ I + R+V M++ E +A + +++L
Sbjct: 425 RGALSFDDHESRIIVNEAGEPQRI----ELRERGIGERIVESFMLIANETVAKH--YHDL 478
Query: 402 ALPY----RGQPQSNIDVSAFAHL-----------------------------PEGPVRS 428
LP+ QP+ F + PE V +
Sbjct: 479 KLPFIYRIHEQPKEEKMQRFFDFISILGILIKGSKSEITPKDLQSALRKVMGRPEEAVVN 538
Query: 429 SAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ +++ M+ A +G L Y FTSPIRRY DL+ H
Sbjct: 539 TILLRSMQQARYSENNYGHYG-LAATYYTHFTSPIRRYPDLIVH 581
>gi|118480167|ref|YP_897318.1| ribonuclease R [Bacillus thuringiensis str. Al Hakam]
gi|196045743|ref|ZP_03112973.1| ribonuclease R [Bacillus cereus 03BB108]
gi|118419392|gb|ABK87811.1| RNAse R [Bacillus thuringiensis str. Al Hakam]
gi|196023574|gb|EDX62251.1| ribonuclease R [Bacillus cereus 03BB108]
Length = 806
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|419495291|ref|ZP_14035009.1| ribonuclease R [Streptococcus pneumoniae GA47461]
gi|421303191|ref|ZP_15753855.1| ribonuclease R [Streptococcus pneumoniae GA17484]
gi|379595373|gb|EHZ60181.1| ribonuclease R [Streptococcus pneumoniae GA47461]
gi|395901813|gb|EJH12749.1| ribonuclease R [Streptococcus pneumoniae GA17484]
Length = 784
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL C +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQVDC--LTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+G GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNYGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|269104707|ref|ZP_06157403.1| exoribonuclease II [Photobacterium damselae subsp. damselae CIP
102761]
gi|268161347|gb|EEZ39844.1| exoribonuclease II [Photobacterium damselae subsp. damselae CIP
102761]
Length = 667
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 179/412 (43%), Gaps = 66/412 (16%)
Query: 112 KGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVT----FVVPGVEKFD 167
KG+ E K+ D V+ + + P +V D C + +++T + P
Sbjct: 116 KGVNPETLKEGDWVVAKITRHP------LVGDNKTFFCEVS-EKITDSNDKIAPWWVTLA 168
Query: 168 HKDISNFLQKAEDNL------LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY 221
H D+ N +D+ L R+DLT L ID D ++DDAL ++ DG ++
Sbjct: 169 HHDLPNAEPAPQDSWNMIDEGLERQDLTELPFITIDGDSTKDMDDALYTVQKDDGSFEIT 228
Query: 222 IHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVS 281
I +ADPT YI G D +A +RG +++LP PM P +L+ E SL +GE A+
Sbjct: 229 IAIADPTSYISVGDKMDDEARERGFTIYLPGRNIPMLPRELSDELCSLIEGEKRPAICCQ 288
Query: 282 VVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELL---HLNLEE-----EAELKILSEAA 332
V +++ G I + S + I+ L+Y++ ++ L H + + E ++K L A
Sbjct: 289 VTVNAQGEIQDDISFFAAWIQSQGRLSYDNVSDYLENGHCDNWQPTPVIEEQIKALHAFA 348
Query: 333 ALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG 389
R +WR I + R +++ D ++ ++ D A R++ E MI +C
Sbjct: 349 NARTEWRQNNAVIFPDRPDYRFELSADND---VVAIHT-DFRRTANRMIEEAMITANICA 404
Query: 390 EAIAT----YGSFNNLALPYRGQPQSNIDVS-AFAHLPEGPVRSSAIVKI---------- 434
+ + G FN + G +D + F E P ++ +
Sbjct: 405 GRVLSDKFGTGVFN----LHSGFNLEKLDTAMEFLTKAEAPFSKEEVISLEGFSALRRWL 460
Query: 435 --MRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ +D R KP H +GL Y +TSPIR+Y D++ H
Sbjct: 461 NQQESSYLDNRLRKFQAYSEVGNKPGPHYAMGLDVYATWTSPIRKYGDMINH 512
>gi|228988352|ref|ZP_04148444.1| Ribonuclease R [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228771333|gb|EEM19807.1| Ribonuclease R [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 808
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|421508859|ref|ZP_15955769.1| ribonuclease R [Bacillus anthracis str. UR-1]
gi|401821035|gb|EJT20195.1| ribonuclease R [Bacillus anthracis str. UR-1]
Length = 599
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 36 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 95
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 96 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 155
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 156 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 215
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 216 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 271
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 272 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 331
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + H L Y FTSPIRRY D + H
Sbjct: 332 RYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 364
>gi|228999860|ref|ZP_04159432.1| Ribonuclease R [Bacillus mycoides Rock3-17]
gi|229007414|ref|ZP_04165011.1| Ribonuclease R [Bacillus mycoides Rock1-4]
gi|228753802|gb|EEM03243.1| Ribonuclease R [Bacillus mycoides Rock1-4]
gi|228759802|gb|EEM08776.1| Ribonuclease R [Bacillus mycoides Rock3-17]
Length = 804
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 156/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ RL++G K+ +H+AD + Y+ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTRLENGNYKLGVHIADVSHYVHEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + + +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVSHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423394690|ref|ZP_17371891.1| ribonuclease R [Bacillus cereus BAG2X1-1]
gi|401657472|gb|EJS74982.1| ribonuclease R [Bacillus cereus BAG2X1-1]
Length = 813
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SDSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|227537978|ref|ZP_03968027.1| exoribonuclease R [Sphingobacterium spiritivorum ATCC 33300]
gi|227242054|gb|EEI92069.1| exoribonuclease R [Sphingobacterium spiritivorum ATCC 33300]
Length = 709
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 173/401 (43%), Gaps = 56/401 (13%)
Query: 120 KDSDRVLLAVAQRPDGKKN--WMVYDQNGASCSIKPQQVTFVV---------PGVEKFDH 168
KD ++V++++ + P G KN V D G + + P VEK +
Sbjct: 182 KDGEKVVVSITEWPKGSKNPVGRVKDVLGKKGENNTEMNAILADYGFPLSFPPEVEK-EA 240
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
S + E +L R+D + + ID +A + DDA+S +L +G ++ +H+AD +
Sbjct: 241 NSFSAVIDNTE--ILKRRDFRTIPTFTIDPADAKDFDDAISFQQLPNGHYEIGVHIADVS 298
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
+++P + DK+A +R TSV+L PM PE+L+ + SLR E + L
Sbjct: 299 HFVKPDTALDKEAFERATSVYLVDRVIPMLPERLSNDLCSLRPNEDRLCFSAVFELDDKA 358
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDT 347
+I + ++I +YE A E++ + E+ L+E A + + + + GAI
Sbjct: 359 NIHDQWFGRTVIHSDRRFSYEEAQEVIENKAGDFTTEILKLNELAYILREKKFKNGAISF 418
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLA 402
+ E +K E+ +P +Y + + D A +L+ + M+L +A Y N L
Sbjct: 419 ESEE--VKFTLDENGKPT-GVYTKVRKD-AHKLIEDFMLLANRKVAEYIGKQGKGKNKLT 474
Query: 403 LPYRGQ----PQSNIDVSAFAHL---------------------------PEGPVRSSAI 431
YR P++ S FA E + +S
Sbjct: 475 FVYRFHDLPNPETLTTFSQFASRFGHKLTIRSDKETAKSLNALMTKIEGSKEQNLLTSLA 534
Query: 432 VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V+ M A A+ K H L Y FTSPIRRY D++ H
Sbjct: 535 VRSM-AKAVYTTKNTSHYGLAFDYYTHFTSPIRRYPDVMVH 574
>gi|29840007|ref|NP_829113.1| VacB/Rnb family exoribonuclease [Chlamydophila caviae GPIC]
gi|29834354|gb|AAP04991.1| exoribonuclease, VacB/Rnb family [Chlamydophila caviae GPIC]
Length = 678
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 155/338 (45%), Gaps = 40/338 (11%)
Query: 169 KDISNFLQKAEDNLL-NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S+F QK + L +RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 190 EETSHFSQKHINQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADV 249
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 250 SHYVTPHSALDQEASKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKE 309
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y V S+I+ Y +TY+ E++ N + K L A L ++ R ++G
Sbjct: 310 GHLSDYEVFRSVIRSKYRMTYDEVDEIVE-NKQPHPISKTLLAMAELSEKFADIREKRGC 368
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E + + +L+ E M+ E IA + S + LP
Sbjct: 369 IRLVLPSFTMALDNLQEPVALI----ETRQTLSHKLIEEFMLKANEVIAYHISHQGVTLP 424
Query: 405 YRGQPQSNID-VSAFAHLPEG--------------------------PVRS---SAIVKI 434
+R N + + +F + +G P+ + S V+
Sbjct: 425 FRIHESPNDESLLSFQEMAKGMGFDIIMTPAQEPDYQYLLQESSAGHPLEAILHSQFVRS 484
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 485 MKTASYSTENKGHYG-LKLDFYTHFTSPIRRYIDLVVH 521
>gi|423405552|ref|ZP_17382701.1| ribonuclease R [Bacillus cereus BAG2X1-3]
gi|401661168|gb|EJS78638.1| ribonuclease R [Bacillus cereus BAG2X1-3]
Length = 812
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-SDSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|310779455|ref|YP_003967788.1| RNAse R [Ilyobacter polytropus DSM 2926]
gi|309748778|gb|ADO83440.1| RNAse R [Ilyobacter polytropus DSM 2926]
Length = 710
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/355 (26%), Positives = 159/355 (44%), Gaps = 45/355 (12%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
+++SN + ED + RKDL +L + ID ++A +LDDA+ +L++G ++ + +AD
Sbjct: 225 REVSNVEETITEDEIKKRKDLRNLPIITIDGEDAKDLDDAVYVEKLKNGNYRLIVSIADV 284
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ YI+ G L DK+A KRG SV+L PMFP++++ SL E T + +
Sbjct: 285 SHYIQDGILLDKEAQKRGNSVYLVDRVLPMFPKEISNGVCSLNPRENKLTFTCEMEIDPS 344
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRL 340
G + + S+IK + +TY ++L + E E L + E + + +
Sbjct: 345 GKVVDSETYKSVIKTAHRMTYSGVNKILDGDEELTKEYEDIKDMLFTMLELSKILRDVKY 404
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
Q+G+ID E ++ + D E + + + A +++ + MI EA+A +
Sbjct: 405 QRGSIDFDLPEIKVVL----DSEGKVESLKKRERGEAEKIIEDFMISANEAVAEKLFWLE 460
Query: 401 LALPYRGQPQS---------------NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF--- 442
+ YR + N + +F L P R +I++ + I
Sbjct: 461 IPSVYRTHDKPDPERIKTLNDTLAKFNYRIHSFEDLH--PKRFQSIIEDSKDKDISMIVH 518
Query: 443 ------RKPVRH-----GVLGLPG--YVQFTSPIRRYMDLLAHYQVGLQAAAWVS 484
K R+ G GL Y FTSPIRRY DLL H +G + S
Sbjct: 519 KFILMSLKQARYTVDNTGHFGLASNYYTHFTSPIRRYSDLLVHRILGTTLNGYPS 573
>gi|434383069|ref|YP_006704852.1| exoribonuclease R [Brachyspira pilosicoli WesB]
gi|404431718|emb|CCG57764.1| exoribonuclease R [Brachyspira pilosicoli WesB]
Length = 576
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 145/318 (45%), Gaps = 34/318 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL LK ID + + +LDDA S R+ D KVY+H++D + +IEP S D +A K
Sbjct: 131 DRVDLRSLKTVTIDSEHSKDLDDAFSIERVDDN-YKVYVHISDVSHFIEPNSPLDIEAKK 189
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L Y MFPE L+ E +SL + +T+ V+ DG+I + V SII
Sbjct: 190 RGNSTYLIDKVYNMFPEILSNEIISLNEKVDRFTLTLICVIDKDGNILQSDVVKSIINSD 249
Query: 304 YMLTYESATELLHLNLEEEAEL-KILSEAAALR-LQWRLQQGAIDTATLETRIKVANPED 361
L+Y A ++++ +E L ++++ A ++ + + + +D + I + +
Sbjct: 250 KKLSYNYAEDIINKKANDEDWLMELINNALEVKNILHKKRSKGVDFENDDINIVLDDNGV 309
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNNLALPYRGQP----------- 409
P I Y E++ + +M ++ +M+L IA + + Y G P
Sbjct: 310 P---IEFYAEEKKE-SMLIIESLMLLANSEIAKKLKDYEGVIYRYHGAPDNYRFNNFKIL 365
Query: 410 ------------QSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV---RHGVLGLP 454
+ N D+ F +G + ++ + V H LG
Sbjct: 366 AHNKGYELKKLDEDNYDLIDFLEKIKGKSEEKLLTGVLMRSMTPSSYSVINKSHFGLGFD 425
Query: 455 GYVQFTSPIRRYMDLLAH 472
Y FTSPIRRY+DL H
Sbjct: 426 YYTYFTSPIRRYVDLTIH 443
>gi|418184793|ref|ZP_12821340.1| ribonuclease R [Streptococcus pneumoniae GA47283]
gi|353851329|gb|EHE31325.1| ribonuclease R [Streptococcus pneumoniae GA47283]
Length = 656
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 134 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 193
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 194 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 251
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 252 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 311
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 312 TNEAKILVDKQGKPVDI----VLRQRGIAERIIESFMLMANETVAEH--FSKLDLPFIYR 365
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 366 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 425
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 426 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 461
>gi|297621275|ref|YP_003709412.1| ribonuclease R [Waddlia chondrophila WSU 86-1044]
gi|297376576|gb|ADI38406.1| ribonuclease R [Waddlia chondrophila WSU 86-1044]
Length = 709
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 146/325 (44%), Gaps = 37/325 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ L +R+D +++ ID A + DDALS + + G + +H+AD + Y++ S +
Sbjct: 253 QSELKDRQDFRSWEIFTIDPTTAKDFDDALSLSKDKTGNYHLGVHIADVSHYVKSDSALE 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
K A R S + P PM P L+ SL+ N +T SV++ S+GS+ Y +
Sbjct: 313 KQARMRCNSTYFPGVCIPMLPPSLSENLCSLKPN--VNRLTASVLMTFDSNGSLLNYRIV 370
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+IK TY A E+L + LK++ E L + R ++G+++ + E R+
Sbjct: 371 KGVIKSKKRFTYREAKEVLDGRKKSPFAPTLKLMEELCLLLKKKRYERGSLEFSIPELRV 430
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V E+ P ++ D +LV E M+ E +AT+ S L L YR + + +
Sbjct: 431 IVD--ENGTPTGTEFI--PYDITHQLVEEFMLKANEVVATHLSKEGLDLTYRVHEEPSEE 486
Query: 415 --------VSAFA-HLPEGPVRSS-----------------AIVKIMRAA-AIDFRKPVR 447
+AF HL E P AI I R AI +
Sbjct: 487 RMNEFVSLANAFGFHLKEAPSPGDLQKFFDEALQTPYGTYLAISYIRRMKLAIYSPANIG 546
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY+DL+ H
Sbjct: 547 HYGLALTHYCHFTSPIRRYVDLVIH 571
>gi|414564436|ref|YP_006043397.1| exoribonuclease R [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338847501|gb|AEJ25713.1| exoribonuclease R [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 774
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 156/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ +L+ R DL ID +A +LDDA+ RL +G +++ +H+AD + Y+ GS
Sbjct: 246 SDQDLMGRVDLRKETTITIDGADAKDLDDAIHIKRLANGNVELGVHIADVSYYVTEGSAL 305
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A RGTSV++ PM PE+L+ SL + +T S ++ D G + +Y +
Sbjct: 306 DREAAARGTSVYVTDRVVPMLPERLSNGICSLNPK--VDRLTQSAIMEIDQQGHVVDYQL 363
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
S+I T+ +TY + +++ + E + +++ + ++ R+++GA++
Sbjct: 364 CQSVINTTFRMTYSAVNQMIAGDKEALQQFASIADDVSTMVELHQILEAMRVKRGALNFD 423
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V + P + V Q A R++ M+ E +A + S L YR
Sbjct: 424 TQEAKILVNDKGMPVDV----VLRQRGVAERMIESFMLAANECVAEHFSRAGLPFIYRVH 479
Query: 407 GQP-----QSNID-VSAFAHLPEGP---------------VRSSAIVKIMRAAAIDFRKP 445
+P Q+ ID SAF +G V S +++ + +
Sbjct: 480 EEPKAEKLQTFIDYASAFGIHIQGTANKISQEALQAFMAKVEGSPGAEVLNMMLLRSMQQ 539
Query: 446 VR-----HGVLGLPG--YVQFTSPIRRYMDLLAH 472
R HG GL Y FTSPIRRY DLL H
Sbjct: 540 ARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 573
>gi|333382728|ref|ZP_08474394.1| ribonuclease R [Dysgonomonas gadei ATCC BAA-286]
gi|332828329|gb|EGK01038.1| ribonuclease R [Dysgonomonas gadei ATCC BAA-286]
Length = 716
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 110/420 (26%), Positives = 177/420 (42%), Gaps = 59/420 (14%)
Query: 120 KDSDRVLLAVAQRPDGKKNWM-----VYDQNGASCS-IKPQQVTFVVPGVEKFDHKDISN 173
KD D+ L+ + + P KN + + Q G + + + F +P K+ K I
Sbjct: 187 KDGDKALVEIVEWPQKAKNPIGKVLDILGQAGENNTEMNAILAEFGLP--YKYPEK-IEA 243
Query: 174 FLQKAEDNLL-----NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
F K D + R+D + + ID +A + DDALS ++++GR +V +H+AD T
Sbjct: 244 FANKIPDEITPEEIAKREDFRNTLTFTIDPRDAKDFDDALSIKQIKNGRWEVGVHIADVT 303
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
Y++ G + DK+ R TS++L T PM PE+L+ SLR E + L D
Sbjct: 304 HYVQEGDIIDKEGESRATSIYLVDRTIPMLPERLSNGLCSLRPHEDKLCYSAIFELDDDA 363
Query: 289 SIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--LKILSEAAALRLQWRLQQGAID 346
+I + + ++I TYE A +++ + + LK+ A LR + R GAI
Sbjct: 364 NIKKSRIARTVIHSDRRFTYEEAQDIIETGEGDYKDEILKLNDLAKKLRGK-RFDNGAIA 422
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNL 401
E R ++ P + Y +D + +L+ E M+L +A + + N
Sbjct: 423 FDRHEVRFEIDEKGKPISVYFKYAKD----SNKLIEEFMLLANRTVAEFIGNVPKNKNAK 478
Query: 402 ALPYRGQPQSN-------------------IDVS------AFAHL-------PEGPVRSS 429
YR N +D S + HL PE + S+
Sbjct: 479 TFVYRIHDLPNAEKMENLSEFIRRFGYKIKVDGSKTNVSKSINHLLDEVSGKPEENLIST 538
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQI 489
++ M A AI + H L Y FTSPIRRY D++ H + SV Q+
Sbjct: 539 IAIRAM-AKAIYSTVNIGHYGLAFEYYTHFTSPIRRYPDMMVHRLLTRYMDGGRSVSKQL 597
>gi|375012907|ref|YP_004989895.1| ribonuclease R [Owenweeksia hongkongensis DSM 17368]
gi|359348831|gb|AEV33250.1| ribonuclease R [Owenweeksia hongkongensis DSM 17368]
Length = 715
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 152/334 (45%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++ + R+D + + ID +A + DDALS +L++G ++ +H+AD T Y+ PGS
Sbjct: 250 SKEEIAKRRDFRDVLTFTIDPHDAKDFDDALSLRKLENGNWEIGVHIADVTHYVTPGSEL 309
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
+++A+KR TSV+L PM PEKL+ + SLR E +T S V D ++
Sbjct: 310 EEEAVKRATSVYLVDRVVPMLPEKLSNKVCSLRPHE--EKLTFSAVFEMDENANVLNEWF 367
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRI 354
++I + Y A E++ A E+ I++ A + Q R++ GA+ +E +
Sbjct: 368 GRTVIYSDHRFAYADAQEVIETGKGTLAEEILIMNGLAKILRQQRMKSGALAFDKVEVKF 427
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY------GSFNNLALPYR-- 406
++ +P +Y ++ D A L+ E M+L +++A + G ++ YR
Sbjct: 428 ELDEENNP---TGVYFKESKD-ANHLIEEFMLLANKSVARFIGKGKNGKPSDKTFVYRIH 483
Query: 407 --GQPQSNIDVSAFAHLPEGPVRSSAIVKIMR--------------------------AA 438
+P +D+S F V + I R A
Sbjct: 484 DEPKPDRLMDLSNFVKQFGYQVDTKNRNGISRSLNKMLSDVKGKGEANMIETLTIRSMAK 543
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A+ + + H L Y FTSPIRRY D++ H
Sbjct: 544 AVYSTQNIGHYGLAFDYYTHFTSPIRRYPDMMVH 577
>gi|307709154|ref|ZP_07645613.1| ribonuclease R [Streptococcus mitis SK564]
gi|307620100|gb|EFN99217.1| ribonuclease R [Streptococcus mitis SK564]
Length = 784
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 157/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVINYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIELMAKLHDTLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMR + V
Sbjct: 475 IHEEPKAEKIQKFIDYASSFGLRIYGTASEISQDALQDIMRTVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|228955358|ref|ZP_04117364.1| Ribonuclease R [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|423507404|ref|ZP_17483972.1| ribonuclease R [Bacillus cereus HD73]
gi|449092118|ref|YP_007424559.1| Ribonuclease R [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228804305|gb|EEM50918.1| Ribonuclease R [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|402444076|gb|EJV75965.1| ribonuclease R [Bacillus cereus HD73]
gi|449025875|gb|AGE81038.1| Ribonuclease R [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 812
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|385261385|ref|ZP_10039510.1| ribonuclease R [Streptococcus sp. SK140]
gi|385188387|gb|EIF35873.1| ribonuclease R [Streptococcus sp. SK140]
Length = 780
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 55/339 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G ++ +H+AD + Y++ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKLLKNGNFELGVHIADVSYYVKEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKNGRVRNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E K ++++ + R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYKKIVPSIELMAKLHEILEGMRIKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I+ + A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDIVLRH----RGTAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID------------------------VSAFAHLPEGPVRSSAIVKIM 435
+P Q ID +SA P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMSAVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARY---SEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|288554069|ref|YP_003426004.1| ribonuclease R [Bacillus pseudofirmus OF4]
gi|288545229|gb|ADC49112.1| ribonuclease R [Bacillus pseudofirmus OF4]
Length = 791
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 148/335 (44%), Gaps = 52/335 (15%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ R+DL + ID +A +LDDA+ +L +G + +H+AD + Y+ GS DK+
Sbjct: 243 DIEGRRDLRDEVIVTIDGADAKDLDDAVHVKQLSNGNFLLGVHIADVSHYVTEGSPIDKE 302
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A R TSV+L PM P +L+ SL ++ + + DG + + + S+I
Sbjct: 303 AADRATSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEITPDGQVVNHEIFQSVI 362
Query: 301 KPTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L N EE + + + AA+ R ++GAID E
Sbjct: 363 KTTERMTYSDVNKILVDNDEEVKARYESLVPNFEAMEKLAAILRNKRFERGAIDFDFKEA 422
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ V D E N V A RL+ E M+ E IA + F+ L LP+ + +
Sbjct: 423 KVLV----DEEGKANDVVLRSRSVAERLIEEFMLAANETIAEH--FHWLKLPFVYRIHED 476
Query: 413 ID----------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 477 PDAEKLTKFLEFITNFGYVVRGNANTVHPRALQKLLEEVRGEPEETVISTVMLRSMQQAK 536
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DLL H
Sbjct: 537 YD---PNSLGHFGLSTEFYTHFTSPIRRYPDLLVH 568
>gi|42784278|ref|NP_981525.1| ribonuclease R [Bacillus cereus ATCC 10987]
gi|42740209|gb|AAS44133.1| ribonuclease R [Bacillus cereus ATCC 10987]
Length = 806
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSIYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|325299554|ref|YP_004259471.1| ribonuclease R [Bacteroides salanitronis DSM 18170]
gi|324319107|gb|ADY36998.1| ribonuclease R [Bacteroides salanitronis DSM 18170]
Length = 715
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 48/339 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS L+ G +V +H+AD + Y++ G DK+A+KR
Sbjct: 260 REDFRTVTTFTIDPKDAKDFDDALSIRPLKPGLWEVGVHIADVSHYVKEGGAIDKEAVKR 319
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V L+ + + +Y + +++IK
Sbjct: 320 ATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAYSVIFTLNDNAEVKDYRIRHTVIKSDR 379
Query: 305 MLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A ++ + E+ L+ A R+ G+ID +E + ++ P
Sbjct: 380 RFTYEEAQAIIETGTGDYTYEILELNRLAQQLRARRMAAGSIDFDRVEVKFEIDEKGKP- 438
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR------------ 406
+++Y + Q+ A +L+ E M+L +A + + PYR
Sbjct: 439 --LSVYFK-QSKEANKLIEEFMLLANRTVAEHIGKVPKNKKPKVFPYRIHDLPDPMKLEN 495
Query: 407 --------------GQPQSNID------VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPV 446
G ++ + +S + E + + ++ M+ A +
Sbjct: 496 LNQFIARFGYKIRTGGSKTEVSRSLNRLLSDVSGKKEQNLIETVSLRAMQKARYSIHN-I 554
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH-----YQVGLQAA 480
H L Y FTSPIRRY DL+ H Y+ G + A
Sbjct: 555 GHYGLAFDYYTHFTSPIRRYPDLMVHRLLTRYEAGGRTA 593
>gi|379006478|ref|YP_005255929.1| ribonuclease R [Sulfobacillus acidophilus DSM 10332]
gi|361052740|gb|AEW04257.1| ribonuclease R [Sulfobacillus acidophilus DSM 10332]
Length = 702
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 48/326 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLT + ID +A +LDDA+S R+ G +V +H+AD + Y+ S D++A +
Sbjct: 235 GRRDLTRYPIVTIDGQDAKDLDDAISVERIDQG-YRVGVHIADVSYYVPEDSALDREARQ 293
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM PE+L+ SL AVT V L G + + + ++I+
Sbjct: 294 RGTSVYLVDRVIPMLPERLSNGIASLNPMVPRLAVTAWVTLDRTGKPIQTAFERTVIQSR 353
Query: 304 YMLTYESATELLHLNLEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRI---KV 356
LTYE ++AE L+ E L + R+++GA+D ET++
Sbjct: 354 RRLTYEGVNRWFQEGQADDAEIGDLLQTAREVHDLLRKRRMERGAVDFDLPETKVILDAA 413
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA---------------------TY 395
+P +P + D A ++ E M+L EA+A
Sbjct: 414 GHPIAIQPRVR-------DIAESIIEEFMLLANEAVARELLQHQLPGLFRVHDEPGADKL 466
Query: 396 GSFNNL------ALPYRGQPQS-NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
F L LP R P++ ++ PE V SSA+++ M+ A P
Sbjct: 467 DQFRELIGALGYRLPKRVTPKALQQLLNQIKGRPEERVISSALLRSMKQARY---GPENT 523
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL H
Sbjct: 524 GHFGLASGEYTHFTSPIRRYPDLWVH 549
>gi|225868149|ref|YP_002744097.1| exoribonuclease R [Streptococcus equi subsp. zooepidemicus]
gi|225701425|emb|CAW98528.1| putative exoribonuclease R [Streptococcus equi subsp.
zooepidemicus]
Length = 774
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 156/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ +L+ R DL ID +A +LDDA+ RL +G +++ +H+AD + Y+ GS
Sbjct: 246 SDQDLMGRVDLRKETTITIDGADAKDLDDAIHIKRLANGNVELGVHIADVSYYVTEGSAL 305
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A RGTSV++ PM PE+L+ SL + +T S ++ D G + +Y +
Sbjct: 306 DREAAARGTSVYVTDRVVPMLPERLSNGICSLNPK--VDRLTQSAIMEIDQQGHVVDYQL 363
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
S+I T+ +TY + +++ + E + +++ + ++ R+++GA++
Sbjct: 364 CQSVINTTFRMTYSAVNQMIAGDKEALQQFASIADDVSTMVELHQILEAMRVKRGALNFD 423
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V + P + V Q A R++ M+ E +A + S L YR
Sbjct: 424 TQEAKILVNDKGMPVDV----VLRQRGVAERMIESFMLAANECVAEHFSRAGLPFIYRVH 479
Query: 407 GQP-----QSNID-VSAFAHLPEGP---------------VRSSAIVKIMRAAAIDFRKP 445
+P Q+ ID SAF +G V S +++ + +
Sbjct: 480 EEPKAEKLQTFIDYASAFGIHIQGTANKISQEALQAFMAKVEGSPGAEVLNMMLLRSMQQ 539
Query: 446 VR-----HGVLGLPG--YVQFTSPIRRYMDLLAH 472
R HG GL Y FTSPIRRY DLL H
Sbjct: 540 ARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 573
>gi|402554787|ref|YP_006596058.1| ribonuclease R [Bacillus cereus FRI-35]
gi|401795997|gb|AFQ09856.1| ribonuclease R [Bacillus cereus FRI-35]
Length = 806
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TS++L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSIYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-AESLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|339627805|ref|YP_004719448.1| ribonuclease R [Sulfobacillus acidophilus TPY]
gi|339285594|gb|AEJ39705.1| ribonuclease R [Sulfobacillus acidophilus TPY]
Length = 714
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 48/326 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLT + ID +A +LDDA+S R+ G +V +H+AD + Y+ S D++A +
Sbjct: 247 GRRDLTRYPIVTIDGQDAKDLDDAISVERIDQG-YRVGVHIADVSYYVPEDSALDREARQ 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM PE+L+ SL AVT V L G + + + ++I+
Sbjct: 306 RGTSVYLVDRVIPMLPERLSNGIASLNPMVPRLAVTAWVTLDRTGKPIQTAFERTVIQSR 365
Query: 304 YMLTYESATELLHLNLEEEAE----LKILSEAAALRLQWRLQQGAIDTATLETRI---KV 356
LTYE ++AE L+ E L + R+++GA+D ET++
Sbjct: 366 RRLTYEGVNRWFQEGQADDAEIGDLLQTAREVHDLLRKRRMERGAVDFDLPETKVILDAA 425
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA---------------------TY 395
+P +P + D A ++ E M+L EA+A
Sbjct: 426 GHPIAIQPRVR-------DIAESIIEEFMLLANEAVARELLQHQLPGLFRVHDEPGADKL 478
Query: 396 GSFNNLA------LPYRGQPQS-NIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRH 448
F L LP R P++ ++ PE V SSA+++ M+ A P
Sbjct: 479 DQFRELIGALGYRLPKRVTPKALQQLLNQIKGRPEERVISSALLRSMKQARY---GPENT 535
Query: 449 GVLGLPG--YVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL H
Sbjct: 536 GHFGLASGEYTHFTSPIRRYPDLWVH 561
>gi|296505529|ref|YP_003667229.1| exoribonuclease II [Bacillus thuringiensis BMB171]
gi|296326581|gb|ADH09509.1| exoribonuclease II [Bacillus thuringiensis BMB171]
Length = 806
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|259046367|ref|ZP_05736768.1| ribonuclease R [Granulicatella adiacens ATCC 49175]
gi|259037004|gb|EEW38259.1| ribonuclease R [Granulicatella adiacens ATCC 49175]
Length = 764
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 149/339 (43%), Gaps = 53/339 (15%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
+ L R DL ID +A +LDDA++ ++ +DG + + +AD + Y+ S DK
Sbjct: 254 EELEGRVDLRQELTVTIDGADAKDLDDAVALVKREDGTFVLTVSIADVSYYVTENSEMDK 313
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A +RGTSV+L PM P++L+ SL E +T + + G+I ++ + S+
Sbjct: 314 EAFERGTSVYLTDRVVPMLPQRLSNGICSLHPYEERLTLTARMEIDRSGTIYQHEIFPSV 373
Query: 300 IKPTYMLTYESATELLHLNLEEEAELKI----------LSEAAALRLQWRLQQGAIDTAT 349
I+ LTY+ L + N EA KI + E + + R+++GAID T
Sbjct: 374 IQSNERLTYDEVNVLFNTN---EASEKITPEIEEMLWNMKELHTILERRRMERGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E +I V P I V + A RL+ M+ E +A + + L +P+ +
Sbjct: 431 QEAKILVDEKGAPTEI----VLRERGVAERLIESFMLAANETVARH--YEQLKVPFIYRI 484
Query: 410 QSNID----------VSAFAHLPEGP-----------------------VRSSAIVKIMR 436
N D ++AF +G V S+ +++ M+
Sbjct: 485 HENPDSEKLQRFLEFITAFGITIKGKNDSITPKKLQKALNEVRGEPYEAVVSTMMLRSMK 544
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
A D P H L Y FTSPIRRY DL+ H +
Sbjct: 545 QAKYDI-TPTGHYGLAAEDYTHFTSPIRRYPDLIVHRMI 582
>gi|301056588|ref|YP_003794799.1| ribonuclease R [Bacillus cereus biovar anthracis str. CI]
gi|300378757|gb|ADK07661.1| ribonuclease R [Bacillus cereus biovar anthracis str. CI]
Length = 806
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + H L Y FTSPIRRY D + H
Sbjct: 541 RYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|228993834|ref|ZP_04153738.1| Ribonuclease R [Bacillus pseudomycoides DSM 12442]
gi|228765890|gb|EEM14540.1| Ribonuclease R [Bacillus pseudomycoides DSM 12442]
Length = 804
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 156/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ RL++G K+ +H+AD + Y+ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTRLENGNYKLGVHIADVSHYVHEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + + +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVSHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|118498033|ref|YP_899083.1| ribonuclease R [Francisella novicida U112]
gi|194323258|ref|ZP_03057042.1| ribonuclease R [Francisella novicida FTE]
gi|118423939|gb|ABK90329.1| ribonuclease R [Francisella novicida U112]
gi|194322622|gb|EDX20102.1| ribonuclease R [Francisella tularensis subsp. novicida FTE]
Length = 765
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|15616115|ref|NP_244420.1| ribonuclease R [Bacillus halodurans C-125]
gi|10176177|dbj|BAB07272.1| ribonuclease R [Bacillus halodurans C-125]
Length = 771
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 151/335 (45%), Gaps = 58/335 (17%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NR+DL + ID +A +LDDA+ RL +G K+ +H+AD + Y++ S D +A +
Sbjct: 246 NRRDLRDEPLVTIDGADAKDLDDAVHVSRLPNGNFKLGVHIADVSYYVKEKSPIDLEAAE 305
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P +L+ SL ++ + + DG + + + S+I+
Sbjct: 306 RGTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEITRDGQVVNHEIFQSVIRTN 365
Query: 304 YMLTYESATELLHLNLEEEAELKI-----------LSEAAALRLQWRLQQGAIDTATLET 352
+TY ++L +E+E EL+ + E AA+ + R +GAID E
Sbjct: 366 ERMTYHDVNKIL---VEKEEELRNRYELLVPMFEDMEELAAILRKKRFGRGAIDFDFKEA 422
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ V P + V + A +L+ E M+ E +A + F+ L LP+ + +
Sbjct: 423 KVLVDEEGKPSDV----VIRERGVAEKLIEEFMLAANETVAEH--FHWLKLPFMYRIHED 476
Query: 413 ID----------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
D ++ F ++ PE V S+ +++ M+ A
Sbjct: 477 PDSEKLGRFLEFITNFGYVVRGTANTVHPRALQKLLEEVRGEPEEQVISTVMLRSMQQAK 536
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 537 YD---PTSLGHFGLSTEFYTHFTSPIRRYPDLIVH 568
>gi|229175792|ref|ZP_04303298.1| Ribonuclease R [Bacillus cereus MM3]
gi|228607743|gb|EEK65059.1| Ribonuclease R [Bacillus cereus MM3]
Length = 814
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|218906302|ref|YP_002454136.1| ribonuclease R [Bacillus cereus AH820]
gi|228917732|ref|ZP_04081273.1| Ribonuclease R [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228948832|ref|ZP_04111107.1| Ribonuclease R [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229124630|ref|ZP_04253815.1| Ribonuclease R [Bacillus cereus 95/8201]
gi|218535287|gb|ACK87685.1| ribonuclease R [Bacillus cereus AH820]
gi|228658970|gb|EEL14625.1| Ribonuclease R [Bacillus cereus 95/8201]
gi|228810794|gb|EEM57140.1| Ribonuclease R [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228841969|gb|EEM87075.1| Ribonuclease R [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 806
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|30023166|ref|NP_834797.1| exoribonuclease II [Bacillus cereus ATCC 14579]
gi|29898726|gb|AAP11998.1| Exoribonuclease II [Bacillus cereus ATCC 14579]
Length = 808
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|385838326|ref|YP_005875956.1| 3'-to-5' exoribonuclease RNase R [Lactococcus lactis subsp.
cremoris A76]
gi|358749554|gb|AEU40533.1| 3'-to-5' exoribonuclease RNase R [Lactococcus lactis subsp.
cremoris A76]
Length = 614
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 148/336 (44%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L R+D + Y ID +++ +LDDA+ +L +G ++ +H+AD + Y+ GS
Sbjct: 142 TQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVHIADVSHYVTEGSSL 201
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
+++A R TSV++ PM P +L+ SL + + +T+S ++ D G I Y +
Sbjct: 202 NEEAYARATSVYVTDRVVPMLPVRLSNNLCSLNEAQ--ERLTMSCLMEIDDKGKIVTYKI 259
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-LKILSEAA-----ALRLQ-----WRLQQGA 344
S+IK TY +TY + +++H E E L+ S+ A A+ L R +G
Sbjct: 260 SPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKFSKIADSIEVAVELHEILETMRKDRGM 319
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I+ E +I + + P I V+ D A R++ M++ E +A F LP
Sbjct: 320 IEFDESEAKIILDDEGHPIEI----VKRDRDTAERMIESFMLMANEIVAL--DFQKKKLP 373
Query: 405 YRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF---------------------- 442
+ AFA L E + + AI+F
Sbjct: 374 SLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKGTSFEKSLTYQLRHTM 433
Query: 443 ------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K +H L Y FTSPIRRY DL+ H
Sbjct: 434 STAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 469
>gi|229072576|ref|ZP_04205778.1| Ribonuclease R [Bacillus cereus F65185]
gi|229082335|ref|ZP_04214798.1| Ribonuclease R [Bacillus cereus Rock4-2]
gi|229181384|ref|ZP_04308712.1| Ribonuclease R [Bacillus cereus 172560W]
gi|423438510|ref|ZP_17415491.1| ribonuclease R [Bacillus cereus BAG4X12-1]
gi|228601959|gb|EEK59452.1| Ribonuclease R [Bacillus cereus 172560W]
gi|228700767|gb|EEL53290.1| Ribonuclease R [Bacillus cereus Rock4-2]
gi|228710552|gb|EEL62525.1| Ribonuclease R [Bacillus cereus F65185]
gi|401116460|gb|EJQ24299.1| ribonuclease R [Bacillus cereus BAG4X12-1]
Length = 808
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|218235949|ref|YP_002369900.1| ribonuclease R [Bacillus cereus B4264]
gi|229049782|ref|ZP_04194339.1| Ribonuclease R [Bacillus cereus AH676]
gi|229112537|ref|ZP_04242074.1| Ribonuclease R [Bacillus cereus Rock1-15]
gi|229130374|ref|ZP_04259332.1| Ribonuclease R [Bacillus cereus BDRD-Cer4]
gi|229153279|ref|ZP_04281457.1| Ribonuclease R [Bacillus cereus m1550]
gi|423588947|ref|ZP_17565033.1| ribonuclease R [Bacillus cereus VD045]
gi|423644284|ref|ZP_17619901.1| ribonuclease R [Bacillus cereus VD166]
gi|218163906|gb|ACK63898.1| ribonuclease R [Bacillus cereus B4264]
gi|228629883|gb|EEK86534.1| Ribonuclease R [Bacillus cereus m1550]
gi|228653073|gb|EEL08953.1| Ribonuclease R [Bacillus cereus BDRD-Cer4]
gi|228670917|gb|EEL26224.1| Ribonuclease R [Bacillus cereus Rock1-15]
gi|228722695|gb|EEL74083.1| Ribonuclease R [Bacillus cereus AH676]
gi|401225335|gb|EJR31884.1| ribonuclease R [Bacillus cereus VD045]
gi|401271349|gb|EJR77366.1| ribonuclease R [Bacillus cereus VD166]
Length = 808
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423634025|ref|ZP_17609678.1| ribonuclease R [Bacillus cereus VD156]
gi|401281931|gb|EJR87836.1| ribonuclease R [Bacillus cereus VD156]
Length = 808
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|52140440|ref|YP_086389.1| ribonuclease R (RNase R) [Bacillus cereus E33L]
gi|196039457|ref|ZP_03106762.1| ribonuclease R [Bacillus cereus NVH0597-99]
gi|229094215|ref|ZP_04225294.1| Ribonuclease R [Bacillus cereus Rock3-42]
gi|51973909|gb|AAU15459.1| ribonuclease R (RNase R) [Bacillus cereus E33L]
gi|196029617|gb|EDX68219.1| ribonuclease R [Bacillus cereus NVH0597-99]
gi|228689207|gb|EEL43029.1| Ribonuclease R [Bacillus cereus Rock3-42]
Length = 810
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423427215|ref|ZP_17404246.1| ribonuclease R [Bacillus cereus BAG3X2-2]
gi|401109400|gb|EJQ17324.1| ribonuclease R [Bacillus cereus BAG3X2-2]
Length = 816
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|228930128|ref|ZP_04093138.1| Ribonuclease R [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228829627|gb|EEM75254.1| Ribonuclease R [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 808
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|228936413|ref|ZP_04099211.1| Ribonuclease R [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228823245|gb|EEM69079.1| Ribonuclease R [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 806
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQQGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|381205827|ref|ZP_09912898.1| ribonuclease R [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 739
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 40/325 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R D L ID +A + DDA+ A +DG KVY+ +AD Y+ PGS D++A
Sbjct: 270 SRVDQRDLGFVTIDGIKARDFDDAVFAKSNEDGSWKVYVAIADVAHYVRPGSAIDQEAYL 329
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+ PT PM PE L+ SL+ +T +++ S G + Y + SII+
Sbjct: 330 RGTSVYFPTHAIPMLPENLSNNLCSLKPDVNRLTLTCEMLIDSAGWVNSYRIYESIIRSR 389
Query: 304 YMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTATLETRIKV 356
L Y+ + L L + K ++++ A R ++GAI+ + +I++
Sbjct: 390 ARLIYKDVADFLDTGLTKTIRNKEILDNLIVMNDVARALEDKRTKRGAINFNFADQKIEL 449
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ-------- 408
D + I ++ + +M+L+ + M+ E +A + + N L YR
Sbjct: 450 ----DDQNQIVSISKEFSSSSMKLIEQFMLEANEIVAKHCTGNRLPALYRVHSSPDLSRL 505
Query: 409 ---------------PQSNIDVSAFAHLPEG----PVRSSAIVKIMRAAAIDFRKPVRHG 449
P S ID F + E ++ + ++R+ A+ + G
Sbjct: 506 ERLKMVFQRFNIPVPPNSLIDSGQFNKVLESIEKLTNKNQLQIILLRSMALATYETNNQG 565
Query: 450 VLGLPG--YVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL+ H
Sbjct: 566 HFGLGAKHYSHFTSPIRRYPDLVTH 590
>gi|228923838|ref|ZP_04087116.1| Ribonuclease R [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228835967|gb|EEM81330.1| Ribonuclease R [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 810
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423479254|ref|ZP_17455969.1| ribonuclease R [Bacillus cereus BAG6X1-1]
gi|402425558|gb|EJV57704.1| ribonuclease R [Bacillus cereus BAG6X1-1]
Length = 814
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423400053|ref|ZP_17377226.1| ribonuclease R [Bacillus cereus BAG2X1-2]
gi|401656680|gb|EJS74195.1| ribonuclease R [Bacillus cereus BAG2X1-2]
Length = 812
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423554429|ref|ZP_17530755.1| ribonuclease R [Bacillus cereus ISP3191]
gi|401181227|gb|EJQ88380.1| ribonuclease R [Bacillus cereus ISP3191]
Length = 808
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|196032970|ref|ZP_03100383.1| ribonuclease R [Bacillus cereus W]
gi|228961348|ref|ZP_04122964.1| Ribonuclease R [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229147655|ref|ZP_04275998.1| Ribonuclease R [Bacillus cereus BDRD-ST24]
gi|423631809|ref|ZP_17607556.1| ribonuclease R [Bacillus cereus VD154]
gi|195994399|gb|EDX58354.1| ribonuclease R [Bacillus cereus W]
gi|228635668|gb|EEK92155.1| Ribonuclease R [Bacillus cereus BDRD-ST24]
gi|228798356|gb|EEM45353.1| Ribonuclease R [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401263375|gb|EJR69503.1| ribonuclease R [Bacillus cereus VD154]
Length = 806
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|254373389|ref|ZP_04988877.1| ribonuclease R [Francisella tularensis subsp. novicida GA99-3549]
gi|254374852|ref|ZP_04990333.1| ribonuclease R [Francisella novicida GA99-3548]
gi|151571115|gb|EDN36769.1| ribonuclease R [Francisella novicida GA99-3549]
gi|151572571|gb|EDN38225.1| ribonuclease R [Francisella novicida GA99-3548]
Length = 765
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|451342739|ref|ZP_21911822.1| ribonuclease R [Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338470|gb|EMD17615.1| ribonuclease R [Eggerthia catenaformis OT 569 = DSM 20559]
Length = 719
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 152/328 (46%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL L ID + A +LDDA+S L + ++ +H+AD + Y+ GS D +A++R
Sbjct: 235 RTDLRDLLTVTIDGETAKDLDDAVSLRVLNNHHYELGVHIADVSYYVTEGSPLDDEAIER 294
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKP 302
GTS++L PM P KL+ SL +G + T+S + D G + ++ + ++I
Sbjct: 295 GTSIYLVDRVIPMLPHKLSNGICSLNEG--ADRYTISCFMEIDQQGKVVDHKILPTVINS 352
Query: 303 TYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
+ +TY + ++L + + E + + E + + + R +GAID T E I
Sbjct: 353 NHRMTYTNVNKILAGDKKVRKEYDDSIELFETMKELSDILTKKRNIRGAIDFDTQEAEII 412
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--------- 406
V N P +++ + ++ + + R++ M+ E +A + + +L YR
Sbjct: 413 VDNKGKP---LDVVLRERGE-SERIIESFMLAANETVAEHFKWMDLPFIYRIHETPKTKK 468
Query: 407 -------GQPQSNIDVSAFAHL---------------PEGPVRSSAIVKIMRAAAIDFRK 444
+P + H+ PE P+ S+ +++ M+ A D R+
Sbjct: 469 LQQFLAIAKPLGYTIHGSLDHIRPKELSKIINKSKGRPEHPIISTLLLRSMQKARYD-RE 527
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H L Y FTSPIRRY DLL H
Sbjct: 528 CLGHFGLADDFYTHFTSPIRRYPDLLVH 555
>gi|160916280|ref|ZP_02078487.1| hypothetical protein EUBDOL_02307 [Eubacterium dolichum DSM 3991]
gi|158432004|gb|EDP10293.1| ribonuclease R [Eubacterium dolichum DSM 3991]
Length = 716
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 148/331 (44%), Gaps = 52/331 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDL L ID ++A +LDDA+S + + G ++Y+H+AD + Y+ GS DK+A
Sbjct: 245 NRKDLRKLLTITIDGEDARDLDDAISIEKTEQG-YRLYVHIADVSHYVTAGSALDKEAYA 303
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV++ PM P L+ SL +T + ++ G++ +Y + S+I
Sbjct: 304 RGTSVYVVDRVVPMLPHALSNGICSLNPKVDRCTLTCMMEINRKGTVIDYQIYPSVINSD 363
Query: 304 YMLTYESATELL-----------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLET 352
+TY + +L HL L+ ++K+LS R R + GAID T E
Sbjct: 364 ERMTYTAVNAILEGDEQVQKQYPHL-LKMCLDMKVLSGIIRKR---REKLGAIDFDTNEA 419
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSF-------------- 398
+I V P I V + A R++ + MI E +A + +
Sbjct: 420 KILVNEKGKPVDI----VLRERKEAERIIEDFMIAANETVAAHVRWLEIPSMFRIHEQPE 475
Query: 399 -----------NNLALPYRGQPQSNIDVSAFAHLPEG------PVRSSAIVKIMRAAAID 441
L + G Q+ A L E V S+ +++ M+ A D
Sbjct: 476 PKRIREFARIAKTLGYTFTGGIQNVYPAQLQAMLKEAKGENNYSVLSTFMLRSMQKARYD 535
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
R+ + H L L Y+ FTSPIRRY DL+ H
Sbjct: 536 -RRCIGHFGLALKNYLHFTSPIRRYPDLVVH 565
>gi|150003660|ref|YP_001298404.1| ribonuclease R [Bacteroides vulgatus ATCC 8482]
gi|294777520|ref|ZP_06742971.1| ribonuclease R [Bacteroides vulgatus PC510]
gi|319640119|ref|ZP_07994846.1| ribonuclease R [Bacteroides sp. 3_1_40A]
gi|345517140|ref|ZP_08796618.1| ribonuclease R [Bacteroides sp. 4_3_47FAA]
gi|149932084|gb|ABR38782.1| ribonuclease R [Bacteroides vulgatus ATCC 8482]
gi|254833905|gb|EET14214.1| ribonuclease R [Bacteroides sp. 4_3_47FAA]
gi|294448588|gb|EFG17137.1| ribonuclease R [Bacteroides vulgatus PC510]
gi|317388397|gb|EFV69249.1| ribonuclease R [Bacteroides sp. 3_1_40A]
Length = 715
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 41/332 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ G +
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+IIK TYE A +++ + + E+ L++ A + + RL GAID +E + ++
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLAAGAIDFDRVEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 432 DETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRK 444
P +++ F + +R+S +V+ + A+ +
Sbjct: 488 DPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKAR 547
Query: 445 PVRHGV----LGLPGYVQFTSPIRRYMDLLAH 472
H + L Y FTSPIRR+ D++ H
Sbjct: 548 YSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|339481012|ref|ZP_08656671.1| exoribonuclease R [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 774
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 157/349 (44%), Gaps = 45/349 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E R+D+T + ID + ++DDA+ A +L +G + +H+AD + Y+ GS D
Sbjct: 248 ESEWAGREDITEQTLVTIDGADTKDIDDAVVAWKLDNGNYHLGVHIADVSHYVTEGSSID 307
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A RGTSV+L PM P ++ SL V A++ + ++ G + ++ + S
Sbjct: 308 REAYNRGTSVYLTDRVIPMLPRNISNGIASLNPNVVRLAMSAEMEINPQGKVVKHRLHTS 367
Query: 299 IIKPTYMLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLE 351
++K +TY++ ++L ++ EE A L K++ E + R Q+GAI+ E
Sbjct: 368 VMKSHARMTYDAVNKILEGDVFVQEEYANLVPMFKVMGELHDILYNMRKQRGAIEFDAPE 427
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQS 411
+I V +D +++ + ++ A R++ M+ E +A + F+ L +P+ +
Sbjct: 428 AQIIV---DDEGKAVDIKLRERG-TAERMIESFMLAANETVAEH--FDKLEVPFLYRIHE 481
Query: 412 NIDV----------SAFAHLPEG-PVRSSAIV--KIMRAAAIDFRK-------------- 444
D A H G P + + I+ K+M A D +
Sbjct: 482 TPDAERAKSFFEFSKALGHPVIGDPNKVTPIMLQKLMNDVAGDPAEQMISTMMLRAMKQA 541
Query: 445 -----PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
PV H LG Y FTSPIRRY DL H + V AQ
Sbjct: 542 KYSPDPVGHFGLGADFYTHFTSPIRRYPDLTVHRLIKWYTQNGYGVSAQ 590
>gi|337293501|emb|CCB91490.1| Ribonuclease R [Waddlia chondrophila 2032/99]
Length = 674
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 146/325 (44%), Gaps = 37/325 (11%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+ L +R+D +++ ID A + DDALS + + G + +H+AD + Y++ S +
Sbjct: 218 QSELKDRQDFRSWEIFTIDPTTAKDFDDALSLSKDKTGNYHLGVHIADVSHYVKSDSALE 277
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVD 296
K A R S + P PM P L+ SL+ N +T SV++ S+GS+ Y +
Sbjct: 278 KQARMRCNSTYFPGVCIPMLPPSLSENLCSLKPN--VNRLTASVLMTFDSNGSLLNYRIV 335
Query: 297 NSIIKPTYMLTYESATELLHLNLEE--EAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
+IK TY A E+L + LK++ E L + R ++G+++ + E R+
Sbjct: 336 KGVIKSKKRFTYREAKEVLDGRKKSPFAPTLKLMEELCLLLKKKRYERGSLEFSIPELRV 395
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414
V E+ P ++ D +LV E M+ E +AT+ S L L YR + + +
Sbjct: 396 IVD--ENGTPTGTEFI--PYDITHQLVEEFMLKANEVVATHLSKEGLDLTYRVHEEPSEE 451
Query: 415 --------VSAFA-HLPEGPVRSS-----------------AIVKIMRAA-AIDFRKPVR 447
+AF HL E P AI I R AI +
Sbjct: 452 RMNEFVSLANAFGFHLKEAPSPGDLQKFFDEALQTPYGTYLAISYIRRMKLAIYSPANIG 511
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY+DL+ H
Sbjct: 512 HYGLALTHYCHFTSPIRRYVDLVIH 536
>gi|30265133|ref|NP_847510.1| ribonuclease R [Bacillus anthracis str. Ames]
gi|47778388|ref|YP_021992.2| ribonuclease R [Bacillus anthracis str. 'Ames Ancestor']
gi|49187943|ref|YP_031196.1| ribonuclease R [Bacillus anthracis str. Sterne]
gi|65317078|ref|ZP_00390037.1| COG0557: Exoribonuclease R [Bacillus anthracis str. A2012]
gi|165870066|ref|ZP_02214723.1| ribonuclease R [Bacillus anthracis str. A0488]
gi|167636704|ref|ZP_02394990.1| ribonuclease R [Bacillus anthracis str. A0442]
gi|167641778|ref|ZP_02400020.1| ribonuclease R [Bacillus anthracis str. A0193]
gi|170689369|ref|ZP_02880562.1| ribonuclease R [Bacillus anthracis str. A0465]
gi|170709407|ref|ZP_02899817.1| ribonuclease R [Bacillus anthracis str. A0389]
gi|227817865|ref|YP_002817874.1| ribonuclease R [Bacillus anthracis str. CDC 684]
gi|229600787|ref|YP_002869326.1| ribonuclease R [Bacillus anthracis str. A0248]
gi|254686466|ref|ZP_05150325.1| ribonuclease R [Bacillus anthracis str. CNEVA-9066]
gi|254724465|ref|ZP_05186249.1| ribonuclease R [Bacillus anthracis str. A1055]
gi|254735673|ref|ZP_05193380.1| ribonuclease R [Bacillus anthracis str. Western North America
USA6153]
gi|254744241|ref|ZP_05201921.1| ribonuclease R [Bacillus anthracis str. Kruger B]
gi|254755538|ref|ZP_05207571.1| ribonuclease R [Bacillus anthracis str. Vollum]
gi|254756993|ref|ZP_05209021.1| ribonuclease R [Bacillus anthracis str. Australia 94]
gi|386738961|ref|YP_006212142.1| Ribonuclease R [Bacillus anthracis str. H9401]
gi|421639757|ref|ZP_16080347.1| ribonuclease R [Bacillus anthracis str. BF1]
gi|30259810|gb|AAP28996.1| ribonuclease R [Bacillus anthracis str. Ames]
gi|47552093|gb|AAT34467.2| ribonuclease R [Bacillus anthracis str. 'Ames Ancestor']
gi|49181870|gb|AAT57246.1| ribonuclease R [Bacillus anthracis str. Sterne]
gi|164714389|gb|EDR19909.1| ribonuclease R [Bacillus anthracis str. A0488]
gi|167510261|gb|EDR85665.1| ribonuclease R [Bacillus anthracis str. A0193]
gi|167527858|gb|EDR90688.1| ribonuclease R [Bacillus anthracis str. A0442]
gi|170125684|gb|EDS94601.1| ribonuclease R [Bacillus anthracis str. A0389]
gi|170666665|gb|EDT17435.1| ribonuclease R [Bacillus anthracis str. A0465]
gi|227007319|gb|ACP17062.1| ribonuclease R [Bacillus anthracis str. CDC 684]
gi|229265195|gb|ACQ46832.1| ribonuclease R [Bacillus anthracis str. A0248]
gi|384388813|gb|AFH86474.1| Ribonuclease R [Bacillus anthracis str. H9401]
gi|403393109|gb|EJY90355.1| ribonuclease R [Bacillus anthracis str. BF1]
Length = 808
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY +L EE + K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILEDEDEELMKRYEPLVPMFKEMGQLAQILREKRMRRGAIDFDF 424
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 425 KEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYRVHE 480
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
D V+ F + PE V S+ +++ M+ A
Sbjct: 481 DPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSMKQA 540
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D + H L Y FTSPIRRY D + H
Sbjct: 541 RYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|332297904|ref|YP_004439826.1| ribonuclease II [Treponema brennaborense DSM 12168]
gi|332181007|gb|AEE16695.1| ribonuclease II [Treponema brennaborense DSM 12168]
Length = 639
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 138/282 (48%), Gaps = 23/282 (8%)
Query: 194 YAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTA 253
YAID + + DDA++ DG V++HVADP + P S D A RGT++++P
Sbjct: 272 YAIDNAWSTDPDDAIAF----DG-THVWVHVADPASIVAPDSTIDTAARNRGTTLYIPEG 326
Query: 254 TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATE 313
M E+ ++E +L A++ ++L G++A+ + +I+K LTY A
Sbjct: 327 AARMLAEE-SLEDYALGLAPESRALSFKILLDETGAVADCDILKTIVK-VERLTYVQAD- 383
Query: 314 LLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQ 373
+E EL L A + R++ GA+ + E I A + I ++ Q
Sbjct: 384 ----GKKETPELAPLYAIAKRNEERRIKAGAVSISLPEVHIAAAGGDVS---ITPVMQTQ 436
Query: 374 ADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVK 433
A +R E M+L GEA A + + + PY Q + +I LPEG + +
Sbjct: 437 ASAVVR---EFMLLAGEAAARFAFKHAIPFPYVSQERPDIP----KDLPEGLAGQYRLRR 489
Query: 434 IMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
MR+ +I P++H LGL Y Q TSP+RRY DL+AH Q+
Sbjct: 490 CMRSRSIGI-TPLQHAGLGLGMYSQVTSPLRRYGDLVAHQQL 530
>gi|229193875|ref|ZP_04320798.1| Ribonuclease R [Bacillus cereus ATCC 10876]
gi|423411133|ref|ZP_17388253.1| ribonuclease R [Bacillus cereus BAG3O-2]
gi|423433082|ref|ZP_17410086.1| ribonuclease R [Bacillus cereus BAG4O-1]
gi|228589613|gb|EEK47509.1| Ribonuclease R [Bacillus cereus ATCC 10876]
gi|401108149|gb|EJQ16081.1| ribonuclease R [Bacillus cereus BAG3O-2]
gi|401112994|gb|EJQ20866.1| ribonuclease R [Bacillus cereus BAG4O-1]
Length = 808
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|206970165|ref|ZP_03231118.1| ribonuclease R [Bacillus cereus AH1134]
gi|206734742|gb|EDZ51911.1| ribonuclease R [Bacillus cereus AH1134]
Length = 810
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423658033|ref|ZP_17633332.1| ribonuclease R [Bacillus cereus VD200]
gi|401288285|gb|EJR94038.1| ribonuclease R [Bacillus cereus VD200]
Length = 808
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|326693239|ref|ZP_08230244.1| ribonuclease R [Leuconostoc argentinum KCTC 3773]
Length = 774
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 165/361 (45%), Gaps = 54/361 (14%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DLT + ID + ++DDA+ A +L +G + +H+AD + Y+ GS D +A K
Sbjct: 253 GREDLTEQTLVTIDGADTKDIDDAVVAWKLDNGNYHLGVHIADVSHYVTEGSTIDAEAYK 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P ++ SL V A++V + ++ G + + + S+IK
Sbjct: 313 RGTSVYLTDRVIPMLPRNISNGIASLNPNVVRLAMSVEMEINPQGQVVNHRLHTSVIKSH 372
Query: 304 YMLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ ++L ++ +E A+L K++ E + R ++GAI+ E ++ V
Sbjct: 373 ARMTYDAVNKILDGDVFVQDEYAQLTPMFKVMGELHDILYNMRKKRGAIEFDAPEAQVVV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA----------------------- 393
+D +++ + ++ A R++ M++ E +A
Sbjct: 433 ---DDDGKAVDIKLRERG-TAERMIESFMLVANETVAEHFDKLEVSFLYRIHEMPDEERA 488
Query: 394 -TYGSFNN-LALPYRGQPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDFRK 444
++ F+ L P G P S + + L P + S+ +++ M+ A
Sbjct: 489 KSFFEFSKALGHPVYGDP-SKVTPTMLQQLMADVAGDPAEQMISTMMLRAMKQAKYG-PD 546
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH--------YQVGLQA-AAWVSVGAQIGDEVEV 495
PV H LG Y FTSPIRRY DL H Y G +A A + QIG++
Sbjct: 547 PVGHFGLGADYYTHFTSPIRRYPDLTVHRLIKWYEKYGYGPEAQAKYADKLGQIGEDTSA 606
Query: 496 K 496
+
Sbjct: 607 R 607
>gi|218900250|ref|YP_002448661.1| ribonuclease R [Bacillus cereus G9842]
gi|228903602|ref|ZP_04067723.1| Ribonuclease R [Bacillus thuringiensis IBL 4222]
gi|228968209|ref|ZP_04129208.1| Ribonuclease R [Bacillus thuringiensis serovar sotto str. T04001]
gi|402563339|ref|YP_006606063.1| ribonuclease R [Bacillus thuringiensis HD-771]
gi|423566017|ref|ZP_17542292.1| ribonuclease R [Bacillus cereus MSX-A1]
gi|434378247|ref|YP_006612891.1| ribonuclease R [Bacillus thuringiensis HD-789]
gi|218543397|gb|ACK95791.1| ribonuclease R [Bacillus cereus G9842]
gi|228791472|gb|EEM39075.1| Ribonuclease R [Bacillus thuringiensis serovar sotto str. T04001]
gi|228856031|gb|EEN00570.1| Ribonuclease R [Bacillus thuringiensis IBL 4222]
gi|401192732|gb|EJQ99743.1| ribonuclease R [Bacillus cereus MSX-A1]
gi|401791991|gb|AFQ18030.1| ribonuclease R [Bacillus thuringiensis HD-771]
gi|401876804|gb|AFQ28971.1| ribonuclease R [Bacillus thuringiensis HD-789]
Length = 812
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423608547|ref|ZP_17584439.1| ribonuclease R [Bacillus cereus VD102]
gi|401237751|gb|EJR44201.1| ribonuclease R [Bacillus cereus VD102]
Length = 806
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|347549752|ref|YP_004856080.1| putative exoribonuclease RNase-R [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982823|emb|CBW86851.1| Putative exoribonuclease RNase-R [Listeria ivanovii subsp. ivanovii
PAM 55]
Length = 793
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQVIITIDGADAKDLDDAVTVQQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A RGTSV+L PM P KL+ SL ++ + + +DG + ++ + SII
Sbjct: 305 AQDRGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDADGHVVKHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAAIVPMLEAMQNLAEILRTKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|343505543|ref|ZP_08743113.1| exoribonuclease II [Vibrio ichthyoenteri ATCC 700023]
gi|342807513|gb|EGU42701.1| exoribonuclease II [Vibrio ichthyoenteri ATCC 700023]
Length = 667
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 189/439 (43%), Gaps = 63/439 (14%)
Query: 88 RVFAKVKVSSGELL----EDKLENQVLQ----KGLLLEFKKDSDRVLLAVAQRP-DGKKN 138
R +VK+ G+L +L+ Q L+ KGL + D V+ + Q P G
Sbjct: 85 RFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVMKGLNPNDFAEGDWVVAHLVQHPLKGDAG 144
Query: 139 WMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYA 195
++V A+ I P VT + + I N+ K +D L R D+TH+
Sbjct: 145 FLVEISKKITDANDKIAPWWVTLAENDLPNSEPAGIDNWELK-DDADLERIDMTHIPFVT 203
Query: 196 IDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATY 255
ID ++DDAL A + +G ++ I +ADPT YI P S D A +RG +++LP
Sbjct: 204 IDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYITPDSDMDTVARERGFTIYLPGRNI 263
Query: 256 PMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATEL 314
PM P LA + SL +GEV A+ +V + DG I + + IK L Y+ ++
Sbjct: 264 PMLPRDLADDLCSLIEGEVRPALCCTVTVSKDGVIGDDIHFFAAHIKSHARLVYDHVSDW 323
Query: 315 L--------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPII 366
L N E ++ L E + R WR + + R +++ D ++
Sbjct: 324 LENGESPQWQPNEEIAQIVRDLYEFSLARADWRQNNAVVFPDRPDYRFELSEDND---VV 380
Query: 367 NLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
++ D A RLV E MI +C A G FN A +P+ DV A
Sbjct: 381 AIHA-DMRRTANRLVEESMITANICAGKTLRANFDCGVFNTHA---GFKPEKIADVVALV 436
Query: 420 HLPEG--PVRSSAIVKIMRAAA------------IDFR------------KPVRHGVLGL 453
+ PEG P + +I + AA +D R +P+ H +GL
Sbjct: 437 N-PEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAYSEMGNQPLPHYAMGL 495
Query: 454 PGYVQFTSPIRRYMDLLAH 472
Y +TSPIR+Y D++ H
Sbjct: 496 DIYATWTSPIRKYGDMINH 514
>gi|229032741|ref|ZP_04188701.1| Ribonuclease R [Bacillus cereus AH1271]
gi|228728568|gb|EEL79584.1| Ribonuclease R [Bacillus cereus AH1271]
Length = 812
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|343514252|ref|ZP_08751332.1| exoribonuclease II [Vibrio sp. N418]
gi|342800564|gb|EGU36082.1| exoribonuclease II [Vibrio sp. N418]
Length = 672
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 188/439 (42%), Gaps = 63/439 (14%)
Query: 88 RVFAKVKVSSGELLEDKLENQVLQKGLLLEFKK--------DSDRVLLAVAQRP-DGKKN 138
R +VK+ G+L Q+ ++ L + KK + D V+ + Q P G
Sbjct: 85 RFIGRVKMFKGKLNVTPDHPQLKKQSLKAKVKKGLNPNDFAEGDWVVAHLVQHPLKGDAG 144
Query: 139 WMV---YDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYA 195
++V A I P VT + + I ++ K +D L R D+TH+
Sbjct: 145 FLVEISKKITDADDKIAPWWVTLAENDLPNSEPAGIDHWELK-DDADLERVDMTHVPFVT 203
Query: 196 IDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATY 255
ID ++DDAL A + +G ++ I +ADPT YI P S DK A +RG +++LP
Sbjct: 204 IDGQSTKDMDDALYAKKNANGDFELTIAIADPTAYITPDSDMDKVARERGFTIYLPGRNI 263
Query: 256 PMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATEL 314
PM P LA + SL +GEV A+ +V + DG I + + IK L Y+ ++
Sbjct: 264 PMLPRDLADDLCSLIEGEVRPALCCTVTVDKDGVIGDDIHFFAAHIKSHARLVYDHVSDW 323
Query: 315 LHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPII 366
L E + ++ L E + R WR + + R +++ D ++
Sbjct: 324 LENGESSEWQPNDEIAQIVRDLYEFSQARANWRQNNAVVFPDRPDYRFELSEDND---VV 380
Query: 367 NLYVEDQADPAMRLVSEMMI---LCG----EAIATYGSFNNLALPYRGQPQSNIDVSAFA 419
++ D A RLV E MI +C A G FN A +P+ DV A
Sbjct: 381 AIHA-DMRRTANRLVEESMITANICAGKTLRANFECGVFNTHA---GFKPEKIADVVALV 436
Query: 420 HLPEG--PVRSSAIVKIMRAAA------------IDFR------------KPVRHGVLGL 453
+ PEG P + +I + AA +D R +P+ H +GL
Sbjct: 437 N-PEGELPFTAESIATLEGFAALRRWLGQQDTSYLDNRIRKAQAYSEMGNQPLPHYAMGL 495
Query: 454 PGYVQFTSPIRRYMDLLAH 472
Y +TSPIR+Y D++ H
Sbjct: 496 DIYATWTSPIRKYGDMINH 514
>gi|423462095|ref|ZP_17438891.1| ribonuclease R [Bacillus cereus BAG5X2-1]
gi|401133950|gb|EJQ41573.1| ribonuclease R [Bacillus cereus BAG5X2-1]
Length = 810
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|229164066|ref|ZP_04292003.1| Ribonuclease R [Bacillus cereus R309803]
gi|228619449|gb|EEK76338.1| Ribonuclease R [Bacillus cereus R309803]
Length = 810
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|229199858|ref|ZP_04326450.1| Ribonuclease R [Bacillus cereus m1293]
gi|228583618|gb|EEK41844.1| Ribonuclease R [Bacillus cereus m1293]
Length = 806
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423583280|ref|ZP_17559391.1| ribonuclease R [Bacillus cereus VD014]
gi|401209340|gb|EJR16099.1| ribonuclease R [Bacillus cereus VD014]
Length = 808
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|375010180|ref|YP_004983813.1| ribonuclease R [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359289029|gb|AEV20713.1| Ribonuclease R [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 758
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 TEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + + G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFP 359
Query: 298 SIIKPTYMLTYESATELL----HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
S+I+ +TY ++L + E+ A L ++++E A + R+++GAID
Sbjct: 360 SVIRTAERMTYSDVNKILVDKDEILREKYAPLVPMFELMAELADILRAKRMKRGAIDFDF 419
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 420 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHE 475
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 476 DPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQA 535
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 536 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 568
>gi|229158693|ref|ZP_04286751.1| Ribonuclease R [Bacillus cereus ATCC 4342]
gi|228624677|gb|EEK81446.1| Ribonuclease R [Bacillus cereus ATCC 4342]
Length = 808
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|323340208|ref|ZP_08080472.1| ribonuclease R [Lactobacillus ruminis ATCC 25644]
gi|417972779|ref|ZP_12613667.1| ribonuclease R [Lactobacillus ruminis ATCC 25644]
gi|323092399|gb|EFZ35007.1| ribonuclease R [Lactobacillus ruminis ATCC 25644]
gi|346330844|gb|EGX99075.1| ribonuclease R [Lactobacillus ruminis ATCC 25644]
Length = 793
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 44/350 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+D+ ++ ID E+ +LDDA++A +L +G + +H+AD + Y+ PG+
Sbjct: 254 TEEEMKGRRDIRDQQLVTIDAIESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVTPGTPL 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A RGTSV+L PM P KL+ SL A++ + + +G I + +
Sbjct: 314 DDEAFSRGTSVYLTDRVIPMLPAKLSNGICSLNPKVDRLALSCDMEITPEGEIIAHEIYP 373
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY + ++L + E+ E + + E + L+ R ++GAI+
Sbjct: 374 SVIKTTERMTYIAINKILESHDEKTMERYKDLVPMFETMGELHKILLKMRKRRGAIEFEE 433
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
E +I V ++ I++ + ++ + R+V M+ E +A + + N+ YR
Sbjct: 434 NEAKIIV---DEKGHAIDIELRERG-TSERMVESFMLAANETVAAHFNKANVPFLYRIHE 489
Query: 408 QPQ-----------SNIDVSA------------------FAHLPEGPVRSSAIVKIMRAA 438
P+ S I V A A PE V S +++ M+ A
Sbjct: 490 TPKEEKIKRFFELLSAIGVEATGSTHDITPKMLQNILKKVAGRPEEAVVSVMLLRSMQQA 549
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+P+ H + Y FTSPIRRY DL+ H A +S +Q
Sbjct: 550 KYS-PEPLGHFGIAATDYTHFTSPIRRYPDLMVHRMAHYYAEHGLSEDSQ 598
>gi|56421579|ref|YP_148897.1| ribonuclease R [Geobacillus kaustophilus HTA426]
gi|56381421|dbj|BAD77329.1| ribonuclease R [Geobacillus kaustophilus HTA426]
Length = 758
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 TEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + + G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFP 359
Query: 298 SIIKPTYMLTYESATELL----HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
S+I+ +TY ++L + E+ A L ++++E A + R+++GAID
Sbjct: 360 SVIRTAERMTYSDVNKILVDKDEILREKYAPLVPMFELMAELADILRAKRMKRGAIDFDF 419
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 420 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHE 475
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 476 DPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQA 535
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 536 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 568
>gi|381184403|ref|ZP_09893021.1| ribonuclease R [Listeriaceae bacterium TTU M1-001]
gi|380315704|gb|EIA19205.1| ribonuclease R [Listeriaceae bacterium TTU M1-001]
Length = 815
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 148/337 (43%), Gaps = 54/337 (16%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + +R+DL + ID +A +LDDA++ +L++G K+ +H+AD T Y++ GS DK
Sbjct: 270 DEIGSRRDLRDQVIITIDGADAKDLDDAITVTKLENGHFKLGVHIADVTHYVKEGSELDK 329
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A R TSV+L PM P +L+ SL ++ + + G + + + SI
Sbjct: 330 EASSRATSVYLVDRVIPMLPHRLSNGICSLNPKVDRFTMSCEMEIDETGHVVSHEIFESI 389
Query: 300 IKPTYMLTYESATELLHLNLEEEAELK--------ILSEAAALRL---QWRLQQGAIDTA 348
IK T +TY +L +E +AEL+ +L + L + R +GAID
Sbjct: 390 IKTTERMTYTDVNAIL---VENDAELRKKYAHIIPMLEDMFDLSKHLHEKREARGAIDFD 446
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
E R+ V PE + V RL+ E M+ E +A + + ++ YR
Sbjct: 447 AKEARVLVDEKGRPEQV----VLRSRSAGERLIEEFMLAANETVAEHFHWMDVPFIYRIH 502
Query: 409 PQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRA 437
D ++ F + PE V S+ +++ M+
Sbjct: 503 EDPKEDKLARFFEFITNFGLVVKGTSNQVHPAALQQVLDEVKGKPEEMVISTVMLRSMQQ 562
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
A D V G GL Y FTSPIRRY DL+ H
Sbjct: 563 AKYD---TVSAGHFGLATDFYTHFTSPIRRYPDLMVH 596
>gi|365162932|ref|ZP_09359055.1| ribonuclease R [Bacillus sp. 7_6_55CFAA_CT2]
gi|363617217|gb|EHL68616.1| ribonuclease R [Bacillus sp. 7_6_55CFAA_CT2]
Length = 808
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|320450022|ref|YP_004202118.1| ribonuclease R [Thermus scotoductus SA-01]
gi|320150191|gb|ADW21569.1| ribonuclease R [Thermus scotoductus SA-01]
Length = 746
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 157/336 (46%), Gaps = 50/336 (14%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ E L R+D HL+V+ ID +A + DDA+ RL G ++ +H+AD + Y++ G
Sbjct: 216 LEIPEAELARRQDFRHLRVFTIDGVDAKDFDDAIHVERLPKG-YRIGVHIADVSHYVKEG 274
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
D++A RGTSV+LP PM PE+L+ SL+ E ++V V L D +
Sbjct: 275 RALDQEAFLRGTSVYLPGRVLPMLPERLSNGVCSLKPHEDRLVLSVLVELDEDLKVKRVR 334
Query: 295 VDNSIIKPTYMLTY---ESATELLHLNLEEEA----ELKILSEAAALRLQWRLQQGAIDT 347
+I+ +TY E+ E L EE A +L +L + Q RL+ G++D
Sbjct: 335 FAEGVIRSVARMTYTEVEAFAEGFGLP-EEHAFLAEDLNLLLDLTQRLRQKRLEAGSLDF 393
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMR-LVSEMMILCGEAIATYGSFNNLALP-- 404
+ E +++V + L++ Q +P R L+ E+M+L +A + N LP
Sbjct: 394 SFPEVKVEVEDG-------TLHLIPQEEPRARSLIEELMLLANRVVAEH--LVNKGLPGL 444
Query: 405 YRGQPQSNID-----VSAFAHL-----------------------PEGPVRSSAIVKIMR 436
+R + + +A A L PE PV ++ +++ +R
Sbjct: 445 FRVHEEPLEEGYGKLRTALARLGYTLPEKLSSKALQRVLLEAKGRPEEPVVANLVLRSLR 504
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L + Y+ FTSPIRRY DL+ H
Sbjct: 505 LARYAAEN-LGHFGLAMEHYLHFTSPIRRYPDLVVH 539
>gi|49481126|ref|YP_039117.1| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49332682|gb|AAT63328.1| ribonuclease R (RNase R) [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 804
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|423650973|ref|ZP_17626543.1| ribonuclease R [Bacillus cereus VD169]
gi|401280293|gb|EJR86214.1| ribonuclease R [Bacillus cereus VD169]
Length = 806
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|385799512|ref|YP_005835916.1| RNAse R [Halanaerobium praevalens DSM 2228]
gi|309388876|gb|ADO76756.1| RNAse R [Halanaerobium praevalens DSM 2228]
Length = 715
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 179/395 (45%), Gaps = 57/395 (14%)
Query: 128 AVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH--KDISNFLQKAEDNLLN- 184
A + P+G+ ++ D++ A I+ +PG E D K+I+N + + +
Sbjct: 185 AKNRNPEGEITEILGDKDDAGVDIEAIIRQLNLPG-EFPDKVLKEIANIPDQINEKSVTE 243
Query: 185 ---RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
R+DL LK+ ID +A +LDDA+S +L + ++ +H+AD + Y+ S D++A
Sbjct: 244 DDEREDLRELKLVTIDGADAKDLDDAVSLEKLSENNYRLGVHIADVSHYVTEASPLDQEA 303
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL------HSDGSIAEYSV 295
R TS++L PM P+KL+ SL + +T+SV + + I ++ +
Sbjct: 304 YARATSIYLVDRVIPMLPQKLSNGLCSLNPQ--VDRLTMSVFIEYNLIGQDEIEIIDHKI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWRLQQGAIDT 347
S+I + LTY+ +L E EL++++E + R ++G++D
Sbjct: 362 TKSVINSNHRLTYDQVQNILESKESAERKEYSDFVEELEMMNELRRRLRKNRFEEGSMDF 421
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
E ++++ + +P INL + A +L+ E MI +A ++ + YR
Sbjct: 422 NFTEVKVELDDSGNP---INLKKRSHRE-AEQLIEEFMIAANRIVAAEMAWREMPFIYRV 477
Query: 408 QPQSNID----VSAFAH--------LPEG-----------PVRSSAIVKIMRAA------ 438
+ ++D + F H + G VR S KI+
Sbjct: 478 HEEPDLDRMKQFNEFIHNFDYRLKGIKNGVHPRALQAILEDVRGSKEEKIIETVMLRSLK 537
Query: 439 -AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A+ K + H LG+ Y FTSPIRRY DL+AH
Sbjct: 538 KAVYSEKNIGHFGLGISHYSHFTSPIRRYPDLIAH 572
>gi|55822595|ref|YP_141036.1| exoribonuclease R [Streptococcus thermophilus CNRZ1066]
gi|55738580|gb|AAV62221.1| exoribonuclease R [Streptococcus thermophilus CNRZ1066]
Length = 817
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 155/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A RGTSV++ PM PE+L+ SL + +T+S ++ G + + +
Sbjct: 305 NREAAARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTLSAIMEITPKGKVINHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVH 572
>gi|386741495|ref|YP_006214674.1| exoribonuclease II [Providencia stuartii MRSN 2154]
gi|384478188|gb|AFH91983.1| exoribonuclease II [Providencia stuartii MRSN 2154]
Length = 647
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 151/331 (45%), Gaps = 42/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R DLT L ID +++DDAL R DG +K+YI +ADPT YI+ GS D
Sbjct: 185 DDEGIERVDLTDLHFVTIDSASTEDMDDALYIERTADGHLKLYIAIADPTSYIKEGSELD 244
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDN 297
K A+ R + +LP PM P +L+ SLR E A+ + + DG++AE +
Sbjct: 245 KLALARAYTNYLPGFNIPMLPRELSDNLCSLRPNERRPALVCAATILDDGNLAEDIQFFS 304
Query: 298 SIIKPTYMLTYESATELLH-------LNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ ++ L Y+ ++ L N ++ ++++L E A R QWR Q +
Sbjct: 305 AWVESKSKLVYDEVSDWLEKSGSWQPTNDTDQQQIELLKEMADKRHQWRQQNALVFKDRP 364
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-------YGSFN---- 399
+ R + +D +I++ VE + A R+V E MI AT +G FN
Sbjct: 365 DYRFLL---DDKGNVIDIVVESRR-TANRIVEEAMITANLCAATQLKNTLGFGVFNVHMG 420
Query: 400 ----NLALPYRGQPQSNIDVSAFAHLP-EG-----------PVR--SSAIVKIMRAAAID 441
+ + + I+ +A + L EG P + S I + A +
Sbjct: 421 FEPLQIEQVVQTLKEHGIETTAESLLTLEGFRQLRRQLDAQPTQFLDSRIRRFQTFAEVK 480
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P H LG Y +TSPIR+Y D++ H
Sbjct: 481 -GEPGPHFGLGFEAYATWTSPIRKYTDIVNH 510
>gi|386321357|ref|YP_006017519.1| Exoribonuclease R [Riemerella anatipestifer RA-GD]
gi|325335900|gb|ADZ12174.1| Exoribonuclease R [Riemerella anatipestifer RA-GD]
Length = 695
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 41/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ +L D
Sbjct: 230 DDEVKKRWDMRGICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVSNTLLD 289
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TSV+L PM PE L+ E SLR E + L+ I + +
Sbjct: 290 QEAYQRATSVYLVDRVVPMLPEVLSNEVCSLRPNEDKYTFSAVFELNDKAEIKKQWFGRT 349
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ L A + + R+++GAI E R +
Sbjct: 350 VIHSDRRFTYEEAQERIETGKGDLADEILTLDRLAKILREERIRKGAITFDRSEVRFNL- 408
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP------YRGQPQS 411
E+ EP + +Y + D + L+ E M+L ++ + S N P YR
Sbjct: 409 -DENNEP-LGVYFKVSKD-SNHLIEEFMLLANRKVSEFISLNKKGSPTGKTFIYRVHDDP 465
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA-------------------AID 441
+ V+ F + L + ++ +++++ A+
Sbjct: 466 DPTKLEALRDFVATFGYKMNLANSQKVAESMNELLKSVKGKGEENMIETLAMRSMSKAVY 525
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H LG Y FTSPIRRY DL+AH
Sbjct: 526 STEPIGHYGLGFEYYTHFTSPIRRYPDLIAH 556
>gi|406943348|gb|EKD75366.1| hypothetical protein ACD_44C00152G0005 [uncultured bacterium]
Length = 734
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/466 (24%), Positives = 198/466 (42%), Gaps = 68/466 (14%)
Query: 59 LNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEF 118
++R G + ++ ++ +Q+LV R+F + V+ ++ +L L+
Sbjct: 136 VDRRGRREATIVEVLSRHIQQLVG-----RLFMEYGVAVVTPDNKRISQDILIPAAELQG 190
Query: 119 KKDSDRVLLAVAQ------RPDGKKNWMVYDQNGAS----CSIKPQQVTFVVPGVEKFDH 168
++ V++ + RP G+ ++ D A +I+ Q+ P + +
Sbjct: 191 AQEGQFVMIEIINQPSLRNRPVGRIIEVLGDHMAAGMEVDVAIRSYQLPHAWPSAVEEEM 250
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ +++ + + E + R+DL L ID ++A + DDA+ + G ++Y+ +AD +
Sbjct: 251 QQMASQISEVEKS--KREDLRELPFVTIDGEDAKDFDDAVYCEEKKQGGWRLYVAIADVS 308
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSL--RQGEVCNAVTVSVVLHS 286
Y+ PGS D+ A RG SV+ P PM PE L+ SL R +C + + ++
Sbjct: 309 HYVRPGSAVDEQASLRGNSVYFPGFVIPMLPEVLSNHLCSLLPRADRLC--LVAEMEINK 366
Query: 287 DGSIAEYSVDNSIIKPTYMLTYESATELLHL---NLEEEAE-----LKILSEAAALRLQW 338
G + + ++I LTY + LL+ +L+ E + LK L E + Q
Sbjct: 367 VGKLTHHRFYPAVIHSKARLTYTTVAALLNAIDPDLDSEHKEIIKPLKRLHELYCVLRQA 426
Query: 339 RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--- 395
R +GA+D T+ETRI E I+ L D A +L+ E MIL A A +
Sbjct: 427 RETRGALDFDTVETRIIFGENRKIEQIVPLVRND----AHKLIEECMILANVAAAQFILK 482
Query: 396 ----GSFNNLALPYRGQPQSNIDVSAF-AHLPEG--------PVRSSAIVKIMRA----- 437
G F P P +D+ F A G P + ++K+++
Sbjct: 483 ERKTGIFRVHGGP---NPDKLVDLRQFLAEFNLGLRGGKSPQPHHYAELIKLLQGRPDMY 539
Query: 438 -----------AAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A + H L L Y FTSPIRRY DLL H
Sbjct: 540 LIQTVLLRSLRQAFYATENTGHFGLALEAYTHFTSPIRRYPDLLVH 585
>gi|385793430|ref|YP_005826406.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678755|gb|AEE87884.1| 3'-to-5' exoribonuclease RNase R [Francisella cf. novicida Fx1]
Length = 765
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 146/341 (42%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDNISDDVVVGNRVDLRNQHFVTIDGEDAKDFDDAVYAHKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SLR E ++ + + +G ++
Sbjct: 308 EKDSALDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLRPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +LL +E EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLLEKKQNTIVENTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILDEHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAQMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|423363316|ref|ZP_17340814.1| ribonuclease R [Bacillus cereus VD022]
gi|401075779|gb|EJP84152.1| ribonuclease R [Bacillus cereus VD022]
Length = 812
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 365 SVIKTTERMTYADVRSILE---DEDEELIKRYQPLVPMFKEMGQLAQILREKRMRRGAID 421
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 422 FDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 477
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 478 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 537
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 538 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|386344317|ref|YP_006040481.1| exoribonuclease R [Streptococcus thermophilus JIM 8232]
gi|339277778|emb|CCC19526.1| exoribonuclease R [Streptococcus thermophilus JIM 8232]
Length = 817
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 155/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A RGTSV++ PM PE+L+ SL + +T+S ++ G + + +
Sbjct: 305 NREAAARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTLSAIMEITPKGKVINHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVH 572
>gi|335998094|ref|ZP_08564006.1| ribonuclease R 1 [Lactobacillus ruminis SPM0211]
gi|335348608|gb|EGM50109.1| ribonuclease R 1 [Lactobacillus ruminis SPM0211]
Length = 793
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 44/350 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+ + R+D+ ++ ID E+ +LDDA++A +L +G + +H+AD + Y+ PG+
Sbjct: 254 TEEEMKGRRDIRDQQLVTIDAIESKDLDDAVTAWKLPNGNYHLGVHIADVSHYVTPGTPL 313
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A RGTSV+L PM P KL+ SL A++ + + +G I + +
Sbjct: 314 DDEAFSRGTSVYLTDRVIPMLPAKLSNGICSLNPKVDRLALSCDMEITPEGEIIAHEIYP 373
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+IK T +TY + ++L + E+ E + + E + L+ R ++GAI+
Sbjct: 374 SVIKTTERMTYIAINKILESHDEKTMERYKDLVPMFETMGELHKILLKMRKRRGAIEFEE 433
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
E +I V ++ I++ + ++ + R+V M+ E +A + + N+ YR
Sbjct: 434 NEAKIIV---DEKGHAIDIELRERG-TSERMVESFMLAANETVAAHFNKANVPFLYRIHE 489
Query: 408 QPQ-----------SNIDVSA------------------FAHLPEGPVRSSAIVKIMRAA 438
P+ S I V A A PE V S +++ M+ A
Sbjct: 490 TPKEEKIKRFFELLSAIGVEATGSTHDITPKMLQNILKKVAGRPEEAVVSVMLLRSMQQA 549
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
+P+ H + Y FTSPIRRY DL+ H A +S +Q
Sbjct: 550 KYS-PEPLGHFGIAATDYTHFTSPIRRYPDLMVHRMAHYYAEHGLSEDSQ 598
>gi|313206658|ref|YP_004045835.1| rnase r [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|383485963|ref|YP_005394875.1| rnase r [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|416112219|ref|ZP_11593184.1| Ribonuclease R [Riemerella anatipestifer RA-YM]
gi|442314133|ref|YP_007355436.1| hypothetical protein G148_0437 [Riemerella anatipestifer RA-CH-2]
gi|312445974|gb|ADQ82329.1| RNAse R [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|315022155|gb|EFT35184.1| Ribonuclease R [Riemerella anatipestifer RA-YM]
gi|380460648|gb|AFD56332.1| rnase r [Riemerella anatipestifer ATCC 11845 = DSM 15868]
gi|441483056|gb|AGC39742.1| hypothetical protein G148_0437 [Riemerella anatipestifer RA-CH-2]
Length = 721
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 41/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R D+ + + ID +A + DDALS +L++G ++ +H+AD + Y+ +L D
Sbjct: 256 DDEVKKRWDMRGICTFTIDPKDAKDFDDALSIRKLENGNWEIGVHIADVSHYVVSNTLLD 315
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
++A +R TSV+L PM PE L+ E SLR E + L+ I + +
Sbjct: 316 QEAYQRATSVYLVDRVVPMLPEVLSNEVCSLRPNEDKYTFSAVFELNDKAEIKKQWFGRT 375
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+I TYE A E + + A E+ L A + + R+++GAI E R +
Sbjct: 376 VIHSDRRFTYEEAQERIETGKGDLADEILTLDRLAKILREERIRKGAITFDRSEVRFNL- 434
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP------YRGQPQS 411
E+ EP + +Y + D + L+ E M+L ++ + S N P YR
Sbjct: 435 -DENNEP-LGVYFKVSKD-SNHLIEEFMLLANRKVSEFISLNKKGSPTGKTFIYRVHDDP 491
Query: 412 NID--------VSAFAH---LPEGPVRSSAIVKIMRAA-------------------AID 441
+ V+ F + L + ++ +++++ A+
Sbjct: 492 DPTKLEALRDFVATFGYKMNLANSQKVAESMNELLKSVKGKGEENMIETLAMRSMSKAVY 551
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P+ H LG Y FTSPIRRY DL+AH
Sbjct: 552 STEPIGHYGLGFEYYTHFTSPIRRYPDLIAH 582
>gi|319946546|ref|ZP_08020781.1| ribonuclease R [Streptococcus australis ATCC 700641]
gi|417920624|ref|ZP_12564125.1| ribonuclease R [Streptococcus australis ATCC 700641]
gi|319747292|gb|EFV99550.1| ribonuclease R [Streptococcus australis ATCC 700641]
gi|342828417|gb|EGU62790.1| ribonuclease R [Streptococcus australis ATCC 700641]
Length = 785
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 154/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID +A +LDDA+ RL+ G ++ +H+AD + Y+ GS
Sbjct: 244 SEKDMEGRLDLRDEIIFTIDGADAKDLDDAVHIKRLEGGNFELGVHIADVSYYVTEGSAL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y +
Sbjct: 304 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDERGRVLRYQI 361
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKIL--SEAAALRLQ-----WRLQQGAIDTA 348
++I T+ +TY E++ + E+ E + + S A + L R ++GA++
Sbjct: 362 TQTVINTTFRMTYSDVNEIIAGDQEKREEYQAIVPSIEAMVGLHQILEGMREKRGALNFD 421
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E +I V NP+ I L Q A R++ M++ E +A + + L YR
Sbjct: 422 TSEAKILV-NPQGKPVDIVLR---QRGIAERMIESFMLIANETVAEHFAKRKLPFIYRIH 477
Query: 407 -----GQPQSNIDVSAFAHLP--------------------EG-PVRSSAIVKIMRAAAI 440
+ Q ID ++ +P EG P + ++R+
Sbjct: 478 EEPKAEKVQKFIDYASSFGIPIYGTASSMSQETLQDIMKRVEGEPYADVLSMMLLRSMQQ 537
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H V
Sbjct: 538 ARYSEHNHGHYGLAAEFYTHFTSPIRRYPDLLVHRMV 574
>gi|313112643|ref|ZP_07798301.1| ribonuclease R [Faecalibacterium cf. prausnitzii KLE1255]
gi|310625066|gb|EFQ08363.1| ribonuclease R [Faecalibacterium cf. prausnitzii KLE1255]
Length = 706
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 172/402 (42%), Gaps = 54/402 (13%)
Query: 120 KDSDRVLLAVAQRPDGKKNWMV-------YDQNGASCS---IKPQQVTFVVPGVEKFDHK 169
KD D+V + + QR + +++ V C+ + Q + P + + K
Sbjct: 168 KDGDKVAVEILQRGNRQEDHRVGVAMRFGSSDEAKRCAKALLYAQDIHSRFPDKVREEAK 227
Query: 170 DISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTK 229
+ N + +E + R DL L ++ ID E ++DDA+S + +G ++ +H+AD +
Sbjct: 228 KLEN-AEVSEKDTEGRMDLRALPIFTIDSAETKDIDDAISLTKTPEGGFELGVHIADVSN 286
Query: 230 YIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS 289
Y++PGS D +A R TSV+ PM P++L+ SL +G + A + + L DG+
Sbjct: 287 YVKPGSELDNEAFNRATSVYYADQVVPMLPKQLSNGICSLNEGVLRLAFSCLMHLDKDGN 346
Query: 290 IAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELK---ILSEAAAL------RLQWRL 340
+ +Y S+I+ Y LL + ++E + K +LS+ A+ R + R
Sbjct: 347 LIDYRFVKSVIRSRVKGVYSEINALLAGSADDELKGKYHEVLSQLPAMKELYGHRARLRK 406
Query: 341 QQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
++G +D + E +K+ ED I AM + E M+L + A +
Sbjct: 407 ERGCMDIESGE--VKLILDEDGHCIDVKKRTSGESEAM--IEEFMLLANQCAAHFARVKQ 462
Query: 401 LALPYRGQPQSNIDV--------------SAFAHLPEGPVRSSAIVKIMRAA-------- 438
+ YR + N + FA P SAI++ +R
Sbjct: 463 IPFVYRVHEEPNAEKLERLHTLLQACGINDHFAKDVPTPKELSAILEGVRGGPYEQIINT 522
Query: 439 --------AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A+ KP H L L Y FTSPIRRY DL H
Sbjct: 523 GMLRCMSKAVYEEKPKGHYGLVLKDYAHFTSPIRRYPDLAIH 564
>gi|262403841|ref|ZP_06080399.1| exoribonuclease II [Vibrio sp. RC586]
gi|262350345|gb|EEY99480.1| exoribonuclease II [Vibrio sp. RC586]
Length = 674
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 176/408 (43%), Gaps = 55/408 (13%)
Query: 111 QKGLLLEFKKDSDRVLLAVAQRP----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKF 166
QKGL ++ D V+ + + P DG + + A+ I P VT +
Sbjct: 116 QKGLNEADFQEGDWVVANLVRHPLKGDDGFFAQISHKITDANDKIAPWWVTLAENDLPNS 175
Query: 167 DHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVAD 226
+ I ++ Q +D L R+DLT L ID + ++DDAL A +L +G + I +AD
Sbjct: 176 EPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIAD 234
Query: 227 PTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHS 286
PT YI P DK A +RG +++LP PM P LA E SL + +V A+ SV +
Sbjct: 235 PTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLMENQVRPALCCSVTISK 294
Query: 287 DGSIAE----YSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAAL 334
DG I + +S + IK L Y+ ++ L E+ + ++ L +
Sbjct: 295 DGVIGDDIRFFSAN---IKSHARLVYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQA 351
Query: 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCG-- 389
R WR + + R +++ D ++ ++ D A RLV E MI +C
Sbjct: 352 RANWRENHAVVFPDRPDYRFELSADND---VVAIHA-DMRRTANRLVEESMITANICAGK 407
Query: 390 --EAIATYGSFNNLA-------------LPYRGQPQSNID----VSAFAHL------PEG 424
+A G FN A + G P ++ + V FA L E
Sbjct: 408 TLQATFGLGVFNTHAGFKAEKMADVVELMAAHGAPNADAETLATVEGFAALRRWLATQET 467
Query: 425 PVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ I K + I +P+ H +GL Y +TSPIR+Y D++ H
Sbjct: 468 SYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRKYGDMINH 514
>gi|319789562|ref|YP_004151195.1| ribonuclease R [Thermovibrio ammonificans HB-1]
gi|317114064|gb|ADU96554.1| ribonuclease R [Thermovibrio ammonificans HB-1]
Length = 716
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 153/340 (45%), Gaps = 41/340 (12%)
Query: 175 LQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPG 234
L+ +E+ + R DL + ID + A + DDA++ +L +G ++++H+AD + Y++PG
Sbjct: 243 LEVSEEEVKGRVDLRQQLCFTIDGENARDFDDAVAIEKLPNGNYRLFVHIADVSHYVKPG 302
Query: 235 SLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYS 294
S D++A +RGTSV+ P PM PE+L+ SL T + ++ G + +Y
Sbjct: 303 SALDREAYRRGTSVYFPDRCIPMLPERLSNGICSLNPNVDRLTFTCEMEINKKGMVVDYK 362
Query: 295 VDNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDT 347
+ SII LTY A +L + E + LK + E A + + R ++G++D
Sbjct: 363 IYESIIHSKARLTYTIAQRILDGDREAIEQFPHVVESLKTMLELAKILNKKRYKRGSLDF 422
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
L + V N E EP +++Y ++ + R++ E MI E +A Y + + YR
Sbjct: 423 -DLPEPVVVLNAEG-EP-VDIYKAERL-WSHRIIEEFMIAANETVAEYMFWTDYPSIYRV 478
Query: 408 ---------QPQSNIDVSAFAHLP------------------EGPVRSSAIVKIM-RAAA 439
Q N S +P EG + +M R A
Sbjct: 479 HESPDREKLQEFLNFVRSLGIRVPAVKNDIQPKLLQKILEQVEGKPEEKLVNYLMLRTMA 538
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQVGL 477
P G GL Y FTSPIRRY DL H V +
Sbjct: 539 RAKYSPDNIGHFGLASTYYTHFTSPIRRYADLQLHRLVKM 578
>gi|293596314|ref|ZP_05230430.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|293594672|gb|EFG02433.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
Length = 783
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 235 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLSNGNWKLGVHIADVTHYVTEGSPLDVE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 295 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 354
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 355 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 414
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 415 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 470
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 471 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 530
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 531 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 560
>gi|55820704|ref|YP_139146.1| exoribonuclease R [Streptococcus thermophilus LMG 18311]
gi|386086316|ref|YP_006002190.1| Exoribonuclease R [Streptococcus thermophilus ND03]
gi|387909409|ref|YP_006339715.1| exoribonuclease R [Streptococcus thermophilus MN-ZLW-002]
gi|55736689|gb|AAV60331.1| exoribonuclease R [Streptococcus thermophilus LMG 18311]
gi|312278029|gb|ADQ62686.1| Exoribonuclease R [Streptococcus thermophilus ND03]
gi|387574344|gb|AFJ83050.1| exoribonuclease R [Streptococcus thermophilus MN-ZLW-002]
Length = 817
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 155/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A RGTSV++ PM PE+L+ SL + +T+S ++ G + + +
Sbjct: 305 NREAAARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTLSAIMEITPKGKVINHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVH 572
>gi|260585036|ref|ZP_05852778.1| ribonuclease R [Granulicatella elegans ATCC 700633]
gi|260157232|gb|EEW92306.1| ribonuclease R [Granulicatella elegans ATCC 700633]
Length = 775
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 148/330 (44%), Gaps = 51/330 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
RKDL ID +A +LDDA++ + +DG ++ + +AD + Y+ S D++A +
Sbjct: 258 GRKDLRGQLTVTIDGADAKDLDDAVALTKREDGTFELTVSIADVSYYVTENSAIDREAFE 317
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P++L+ SL E ++ + + G+I +Y + S+I+
Sbjct: 318 RGTSVYLTDRVVPMLPQRLSNGICSLHPHEERLTMSCRMEIDRSGTIYQYEIFPSVIRSD 377
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRL----------QWRLQQGAIDTATLETR 353
LTY EL E+ E++I E + L + R ++GAID T E +
Sbjct: 378 MRLTYSLVNELY-----EKKEVEIQDEIQQMLLDMKELHHILERRRKERGAIDFETHEAK 432
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQPQS 411
I V P I++ + ++ A RL+ M+ E +A + N+ YR QPQ
Sbjct: 433 IIVDEQGAP---IDIQIRERG-VAERLIESFMLAANETVAMHYQRKNVPFIYRVHEQPQQ 488
Query: 412 NI------DVSAFAHLPEGP-----------------------VRSSAIVKIMRAAAIDF 442
V+AF +G V S+ +++ M+ A D
Sbjct: 489 EKMQRFLEFVTAFGINIKGTSDTISPKKLQKALDEVKGETYEAVVSTMMLRSMKQAKYDI 548
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P H L Y FTSPIRRY DL+ H
Sbjct: 549 -IPSGHYGLAAEDYTHFTSPIRRYPDLIVH 577
>gi|423613247|ref|ZP_17589107.1| ribonuclease R [Bacillus cereus VD107]
gi|401242409|gb|EJR48784.1| ribonuclease R [Bacillus cereus VD107]
Length = 810
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 52/338 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 245 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 305 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 364
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE------------LKILSEAAALRLQWRLQQGAI 345
S+IK T +TY + LE+E E K + + A + + R+++GAI
Sbjct: 365 SVIKTTERMTYADVRSI----LEDEDEALIERYEPLVPMFKEMGQLAQILREKRMRRGAI 420
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
D E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ Y
Sbjct: 421 DFDFKEAKVLVDEEGKPTDVV---MRDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMY 476
Query: 406 RGQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKI 434
R D V+ F + PE V S+ +++
Sbjct: 477 RVHEDPKEDKLERFFEFVTNFGYAVKGRANEIHPRALQQILEMVQGQPEEVVISTVMLRS 536
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A D + H L Y FTSPIRRY D + H
Sbjct: 537 MKQARYD-SDSLGHFGLSTEFYTHFTSPIRRYPDTIVH 573
>gi|222152692|ref|YP_002561868.1| exoribonuclease R [Streptococcus uberis 0140J]
gi|222113504|emb|CAR41270.1| putative exoribonuclease R [Streptococcus uberis 0140J]
Length = 770
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 153/336 (45%), Gaps = 55/336 (16%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ R DL + ID +A +LDDA+ L +G ++ +H+AD + Y+ GS D++
Sbjct: 248 DLIGRVDLRQEITFTIDGADAKDLDDAIHIKPLANGNYELGVHIADVSYYVTEGSALDRE 307
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVDNS 298
A+ RGTSV++ PM PE+L+ SL + +T S ++ S+G + + + S
Sbjct: 308 AVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDSNGRVLNHQICQS 365
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAA--LRL-----QWRLQQGAIDTATLE 351
+IK TY +TY + +++ N E ++E+ ++L + R+++GA++ T E
Sbjct: 366 VIKTTYRMTYSAVNDMIAGNQESLETYAAIAESVEHMVKLHKILEKMRVKRGALNFDTSE 425
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP 409
RI V + P I V Q A R++ M+ E +A + + L YR +P
Sbjct: 426 ARIIVNDKGMPVDI----VVRQRGIAERMIESFMLAANECVAEHFAKAKLPFIYRIHEEP 481
Query: 410 -----QSNID-VSAFAHLPEGPVRSSAIVKIMRAAAIDFRKPVR---------------- 447
Q ID S F +G KI + A +F V
Sbjct: 482 KAEKLQKFIDYASVFGIQIQGTAN-----KITQEALQNFMAKVEGKPGAEVLNMMLLRSM 536
Query: 448 ---------HGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 537 QQARYSENNHGHYGLAAEYYTHFTSPIRRYPDLLVH 572
>gi|153813799|ref|ZP_01966467.1| hypothetical protein RUMTOR_00005 [Ruminococcus torques ATCC 27756]
gi|317501944|ref|ZP_07960128.1| ribonuclease R [Lachnospiraceae bacterium 8_1_57FAA]
gi|336440076|ref|ZP_08619675.1| ribonuclease R [Lachnospiraceae bacterium 1_1_57FAA]
gi|145848195|gb|EDK25113.1| ribonuclease R [Ruminococcus torques ATCC 27756]
gi|316896624|gb|EFV18711.1| ribonuclease R [Lachnospiraceae bacterium 8_1_57FAA]
gi|336014425|gb|EGN44274.1| ribonuclease R [Lachnospiraceae bacterium 1_1_57FAA]
Length = 735
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 45/333 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY-IHVADPTKYIEPGSL 236
+E + RKDLT++K+ ID ++A +LDDA+S R DG V +H+AD T Y++ S
Sbjct: 272 SEADRAGRKDLTNVKMVTIDSEDAKDLDDAVSVER--DGENYVLGVHIADVTNYVQEKSA 329
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D++A++RGTSV+L PM P L+ SL GE A++ + + G + + +
Sbjct: 330 LDREALERGTSVYLADRVIPMLPHILSNGVCSLNAGEERLALSCIMTISPKGEMISHEIT 389
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTAT 349
S+I ++Y + +L + + E + ++ E + L Q R ++GAID
Sbjct: 390 ESVICVDKRMSYNKVSAVLEQDEQALREYEGFVPMIWMMKELSELIRQKRGKRGAIDFDF 449
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
ET+I + ED +PI + Y +PA ++ + M++ E +A + + YR
Sbjct: 450 PETKIVL--DEDGKPIEVKPY---DRNPATEIIEDFMLMANETVAEEFFWREIPFLYRTH 504
Query: 409 PQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRA----------AAIDFR--KPV 446
+ D +SAF H+ G +R I K++ + + R K
Sbjct: 505 EAPDEDRIRQLSAFVNSFGYHIHVGNEIRPKEIQKLLEKVEGKPEEDLISRLTLRSMKQA 564
Query: 447 RH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
R+ G GL Y FTSPIRRY DL H
Sbjct: 565 RYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIH 597
>gi|418018209|ref|ZP_12657765.1| exoribonuclease R [Streptococcus salivarius M18]
gi|345527058|gb|EGX30369.1| exoribonuclease R [Streptococcus salivarius M18]
Length = 817
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++LL R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLLGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A+ RGTSV++ PM PE+L+ SL + +T S ++ G + + +
Sbjct: 305 NREAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEITPKGKVVNHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-------WRLQQGAIDTA 348
S+I T+ +TY E+L N E+ + K + E+ + + R ++GA++
Sbjct: 363 CQSVINTTFRMTYSDVNEMLAGNPEKIEQFKPIMESVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNEKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGVQIKGTANKMDQLDLQEFMAKVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVH 572
>gi|313672634|ref|YP_004050745.1| ribonuclease r [Calditerrivibrio nitroreducens DSM 19672]
gi|312939390|gb|ADR18582.1| ribonuclease R [Calditerrivibrio nitroreducens DSM 19672]
Length = 648
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 141/331 (42%), Gaps = 57/331 (17%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R D L ID + A + DDA+S RL++G K+++H+AD + ++ P S DK+A +R
Sbjct: 192 RTDFRDLFTVTIDGETARDFDDAISIQRLENG-YKLFVHIADVSHFVRPDSRLDKEAYRR 250
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTS++ P PM PE+L+ + SLR GE +TV + G+ + + S+IK Y
Sbjct: 251 GTSIYFPEFAIPMLPEELSNDLCSLRPGEERLTITVEIDYDEKGNRIDSNFYQSVIKSDY 310
Query: 305 MLTYESATELLHLNLEEEAELKILSEA-AALRL-----QWRLQQGAIDTATLETRIKVAN 358
LTY ++ E+ +L+++S L L Q R G ID E
Sbjct: 311 RLTYNYVNSIIE-GYEKTDDLRLISLIDTGLSLLDKLIQRRKNDGMIDFDLPEVEFYFDE 369
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALPYRGQPQ------ 410
D I L + + RL+ MI EA+A + +++ G P
Sbjct: 370 NGDMVDIKPL----ERKISHRLIEFFMIEANEAVAEFLEKAYDRGMFRVHGSPDPEKLQE 425
Query: 411 ---------------------------SNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR 443
I S F++L SS +V+ M+ A
Sbjct: 426 FVTICHIYGIEVGELVVDDPKSIQSLSEKIANSKFSYL-----LSSMLVRTMQKAIY--- 477
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 478 SPDNTGHFGLSSTCYTHFTSPIRRYPDLVVH 508
>gi|256545220|ref|ZP_05472585.1| ribonuclease R [Anaerococcus vaginalis ATCC 51170]
gi|256399047|gb|EEU12659.1| ribonuclease R [Anaerococcus vaginalis ATCC 51170]
Length = 706
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 148/325 (45%), Gaps = 43/325 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+RKDL L ID ++ + DDA+S + ++ I +Y+H+AD + Y++ S DK+A +
Sbjct: 244 DRKDLRDLFTVTIDGRDSKDFDDAISIEKDEEDFI-LYVHIADVSHYVKENSEIDKEAYQ 302
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L PM PE+L+ SL E A+++ + ++ G + +Y + SIIK
Sbjct: 303 RGNSTYLYNIVLPMLPEELSNGICSLNPNENRLALSLKMRINKLGKVVDYKIYKSIIKSN 362
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQW-------RLQQGAIDTATLETRIKV 356
Y L Y+ + L N E+ + +IL E L R ++GAID E++I V
Sbjct: 363 YRLVYDDVNDYLD-NKEKVYDDEILIEKLELFDNLYKILKNKREKRGAIDFNFTESQIDV 421
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT---YGSF--------------- 398
D ++N+ + ++ A +++ E M++ E IA+ Y F
Sbjct: 422 NEKGD---VLNISIFERG-SANKMIEEFMLVSNETIASLFAYMDFPSLYRIHEKPKDEKV 477
Query: 399 -------NNLALPYRGQPQSNIDVSAFAHLPEGPVRSSAI----VKIMRAAAIDFRKPVR 447
N L +G+ D G S + ++ MR A + +
Sbjct: 478 ESFKNILNTLGYNIKGKELHPKDFQEILKEVSGKDDESLVNMLMLRTMRKAKYANYRDIH 537
Query: 448 HGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FT+PIRRY DL+ H
Sbjct: 538 FG-LATKYYTHFTAPIRRYPDLIVH 561
>gi|331088240|ref|ZP_08337159.1| ribonuclease R [Lachnospiraceae bacterium 3_1_46FAA]
gi|330408484|gb|EGG87950.1| ribonuclease R [Lachnospiraceae bacterium 3_1_46FAA]
Length = 735
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 159/333 (47%), Gaps = 45/333 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVY-IHVADPTKYIEPGSL 236
+E + RKDLT++K+ ID ++A +LDDA+S R DG V +H+AD T Y++ S
Sbjct: 272 SEADRAGRKDLTNVKMVTIDSEDAKDLDDAVSVER--DGENYVLGVHIADVTNYVQEKSA 329
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
D++A++RGTSV+L PM P L+ SL GE A++ + + G + + +
Sbjct: 330 LDREALERGTSVYLADRVIPMLPHILSNGVCSLNAGEERLALSCIMTISPKGEMISHEIT 389
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTAT 349
S+I ++Y + +L + + E + ++ E + L Q R ++GAID
Sbjct: 390 ESVICVDKRMSYNKVSAVLEQDEQALREYEGFVPMIWMMKELSELIRQKRGKRGAIDFDF 449
Query: 350 LETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
ET+I + ED +PI + Y +PA ++ + M++ E +A + + YR
Sbjct: 450 PETKIVL--DEDGKPIEVKPY---DRNPATEIIEDFMLMANETVAEEFFWREIPFLYRTH 504
Query: 409 PQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRA----------AAIDFR--KPV 446
+ D +SAF H+ G +R I K++ + + R K
Sbjct: 505 EAPDEDRIRQLSAFVNSFGYHIHVGNEIRPKEIQKLLEKVEGKPEEDLISRLTLRSMKQA 564
Query: 447 RH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
R+ G GL Y FTSPIRRY DL H
Sbjct: 565 RYTTENTGHFGLAAKYYTHFTSPIRRYPDLQIH 597
>gi|445374334|ref|ZP_21426382.1| exoribonuclease R [Streptococcus thermophilus MTCC 5460]
gi|445388839|ref|ZP_21428097.1| exoribonuclease R [Streptococcus thermophilus MTCC 5461]
gi|444750587|gb|ELW75389.1| exoribonuclease R [Streptococcus thermophilus MTCC 5461]
gi|444750684|gb|ELW75480.1| exoribonuclease R [Streptococcus thermophilus MTCC 5460]
Length = 817
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A RGTSV++ PM PE+L+ SL + +T+S ++ G + + +
Sbjct: 305 NREAAARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTLSAIMEITPKGKVINHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGIQIKGTATKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H +
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMI 575
>gi|255520583|ref|ZP_05387820.1| exoribonuclease RNase-R [Listeria monocytogenes FSL J1-175]
Length = 753
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|183599246|ref|ZP_02960739.1| hypothetical protein PROSTU_02705 [Providencia stuartii ATCC 25827]
gi|188021476|gb|EDU59516.1| exoribonuclease II [Providencia stuartii ATCC 25827]
Length = 647
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 151/331 (45%), Gaps = 42/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D + R DLT L ID +++DDAL R DG +K+YI +ADPT YI+ GS D
Sbjct: 185 DDEGIERVDLTDLHFVTIDSASTEDMDDALYIERTADGHLKLYIAIADPTSYIKEGSELD 244
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDN 297
K A+ R + +LP PM P +L+ SLR E A+ + + DG++AE +
Sbjct: 245 KLALARAYTNYLPGFNIPMLPRELSDNLCSLRPNERRPALVCAATILDDGNLAEDIQFFS 304
Query: 298 SIIKPTYMLTYESATELLH-------LNLEEEAELKILSEAAALRLQWRLQQGAIDTATL 350
+ ++ L Y+ ++ L N ++ ++++L E A R QWR Q +
Sbjct: 305 AWVESKSKLVYDEVSDWLEKSGSWQPTNDADQQQIELLKEMADKRHQWRQQNALVFKDRP 364
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-------YGSFN---- 399
+ R + +D +I++ VE + A R+V E MI AT +G FN
Sbjct: 365 DYRFLL---DDKGNVIDIVVESRR-TANRIVEEAMITANLCAATQLKNTLGFGVFNVHMG 420
Query: 400 ----NLALPYRGQPQSNIDVSAFAHLP-EG-----------PVR--SSAIVKIMRAAAID 441
+ + + I+ +A + L EG P + S I + A +
Sbjct: 421 FEPLQIEQVVQTLKEHGIETTAESLLTLEGFRQLRRQLDAQPTQFLDSRIRRFQTFAEVK 480
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P H LG Y +TSPIR+Y D++ H
Sbjct: 481 -GEPGPHFGLGFEAYATWTSPIRKYTDIVNH 510
>gi|291522313|emb|CBK80606.1| RNAse R [Coprococcus catus GD/7]
Length = 721
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 153/330 (46%), Gaps = 50/330 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL ID ++A +LDDA++ + ++DG + +H+AD T Y++ GS DK+A+K
Sbjct: 254 GRRDLRDRMTVTIDGEDAKDLDDAIT-LEMKDGHYFLGVHIADVTHYVKEGSPLDKEALK 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P L+ SL +G A++ + L G I + + S+I+
Sbjct: 313 RGTSVYLVNKVIPMLPHALSNGICSLNEGVDRLALSCLMELDERGGIIGHEITESVIRVN 372
Query: 304 YMLTYESATELLHLNLEEEA----------ELKILSEAAALRLQWRLQQGAIDTATLETR 353
+ ++Y + +L + E E+K LS+ L + R ++G ID E++
Sbjct: 373 HRMSYNQVSRILDGDKELTVVYADAVKMFKEMKTLSD---LLRKKRKERGGIDFDFPESK 429
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
I++ + + P ++++ D+ +PA +++ + M++ E IA + L YR +
Sbjct: 430 IELDDRDFP---VDIHPYDR-NPATKIIEDFMLMANETIAEDFFWQELPFLYRSHESPDT 485
Query: 414 D-------------------------------VSAFAHLPEGPVRSSAIVKIMRAAAIDF 442
D + PE + S +++ M+ A
Sbjct: 486 DRIKRLMILIKNYGYYMNIRQDSIHPMEFQKLLGKIEGTPEETMISRLVLRSMKQARYT- 544
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L + Y FTSPIRRY DL H
Sbjct: 545 TENLGHFGLAVSYYCHFTSPIRRYPDLQIH 574
>gi|407718701|ref|YP_006796106.1| ribonuclease R [Leuconostoc carnosum JB16]
gi|407242457|gb|AFT82107.1| ribonuclease R [Leuconostoc carnosum JB16]
Length = 774
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 47/328 (14%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+T + ID + ++DDA+ A RL +G + +H+AD + Y+ GS DK+A R
Sbjct: 254 REDITEQTLVTIDGADTKDIDDAVVAWRLSNGNYHLGVHIADVSHYVTEGSSIDKEAYNR 313
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P ++ SL A++ + ++ +G + + + S++K
Sbjct: 314 GTSVYLTDRVIPMLPRNISNGIASLNPNVERLAMSAEMEINPEGRVVNHRLHTSVMKSHA 373
Query: 305 MLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIKVA 357
+TY++ ++L ++ EE A+L K++ E + + R ++GAI+ E +I V
Sbjct: 374 RMTYDAVNKILEGDVFVQEEYAQLTPMFKVMGELHEILYKMRKKRGAIEFDAPEAQIIV- 432
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR--------- 406
+D +++ + ++ A R++ M+ E +A + F+ L +P YR
Sbjct: 433 --DDEGKAVDIQLRERG-TAERMIESFMLAANETVAEH--FDKLEVPFLYRIHEVPDGER 487
Query: 407 ----------------GQPQSNIDV------SAFAHLPEGPVRSSAIVKIMRAAAIDFRK 444
G P V + A P + S+ +++ M+ A +
Sbjct: 488 AKSFFEFSKALGHPVYGDPSKVTPVMLQKLMNDIAGDPAEQMISTMMLRAMKQAKYS-PE 546
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
PV H LG Y FTSPIRRY DL H
Sbjct: 547 PVGHFGLGAEYYTHFTSPIRRYPDLTVH 574
>gi|47096836|ref|ZP_00234417.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
gi|47014813|gb|EAL05765.1| ribonuclease R, putative [Listeria monocytogenes str. 1/2a F6854]
Length = 783
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 235 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + ++ +G + + + SII
Sbjct: 295 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 354
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 355 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 414
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 415 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 470
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 471 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 530
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 531 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 560
>gi|423313194|ref|ZP_17291130.1| ribonuclease R [Bacteroides vulgatus CL09T03C04]
gi|392686408|gb|EIY79714.1| ribonuclease R [Bacteroides vulgatus CL09T03C04]
Length = 715
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 41/332 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E + R+D ++ + ID +A + DDALS ++ G +V +H+AD T Y++ G +
Sbjct: 252 SEADYAEREDFRNVTTFTIDPKDAKDFDDALSIRLIKPGLWEVGVHIADVTHYVKEGGVI 311
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
DK+A KR TSV+L T PM PE+L SLR E A +V ++ G + + + +
Sbjct: 312 DKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPDEEKLAFSVIFNMNEKGEVKDSRIVH 371
Query: 298 SIIKPTYMLTYESATELLHLNLEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+IIK TYE A +++ + + E+ L++ A + + RL GAID +E + ++
Sbjct: 372 TIIKSDRRFTYEEAQKVIETGEGDYKEEILELNKLAQILRKQRLVAGAIDFDRVEVKFEI 431
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSF--NNLA--LPYR----G 407
P +++Y ++ + A +L+ E M+L +A G N A PYR
Sbjct: 432 DETGKP---LSVYFKESKE-ANKLIEEFMLLANRTVAEKIGKVPKNKKAKVFPYRIHDLP 487
Query: 408 QPQSNIDVSAFAHLPEGPVRSSA-----------------------IVKIMRAAAIDFRK 444
P +++ F + +R+S +V+ + A+ +
Sbjct: 488 DPDKLENLNWFINRFGYKIRTSGSKTEISKSINRLLDDIKNKKEQNLVETVSLRAMQKAR 547
Query: 445 PVRHGV----LGLPGYVQFTSPIRRYMDLLAH 472
H + L Y FTSPIRR+ D++ H
Sbjct: 548 YSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|225175329|ref|ZP_03729324.1| ribonuclease R [Dethiobacter alkaliphilus AHT 1]
gi|225169081|gb|EEG77880.1| ribonuclease R [Dethiobacter alkaliphilus AHT 1]
Length = 709
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 160/345 (46%), Gaps = 47/345 (13%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
K+I F + A ++L R DL L + ID +A +LDDA+S + +G ++ +H+AD
Sbjct: 228 KEIKAFRRDLAPEDLEGRMDLRDLPMVTIDGADAKDLDDAVSLHQKDNGNWELGVHIADV 287
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
Y++ G+ DK+A RGTS++L PM P +L+ + SL A++V + L+
Sbjct: 288 GHYVKEGTALDKEAFHRGTSIYLVDRVIPMLPPELSNDLCSLNPQVDRLAMSVFMELNHQ 347
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELL---HLNLEEEAE-----LKILSEAAALRLQWR 339
G + + S+I+ +TY+ ++L NL + + + + E A + + R
Sbjct: 348 GKVVSHDFGPSVIRTQERMTYDDVRDILVDKDENLRKRYQPLVPMFEKMEEMAMILRKNR 407
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS-- 397
+GA+D A E ++K+ P I++ ++ M ++ E M++C E +A + S
Sbjct: 408 FDRGALDFAVPEVKVKLDEQGKP---IDIVPRPRSIAEM-IIEEFMLICNETVAEHFSRM 463
Query: 398 -----------------------FNNLALPYRGQPQSNIDVSAFAHL-------PEGPVR 427
+NL L +G P I A L PE V
Sbjct: 464 EVPFVYRVHEQPSEAKMQNFREFVHNLGLSLKGSP-DKIHSRALQALLDEVEGKPEERVV 522
Query: 428 SSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ +++ M+ A + +G L Y FTSPIRRY DL+ H
Sbjct: 523 NTLLLRTMQQARYSAHRSPHYG-LAAEYYSHFTSPIRRYPDLMIH 566
>gi|254933125|ref|ZP_05266484.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|405750793|ref|YP_006674259.1| ribonuclease R [Listeria monocytogenes ATCC 19117]
gi|417318446|ref|ZP_12105028.1| ribonuclease R [Listeria monocytogenes J1-220]
gi|424824199|ref|ZP_18249212.1| Ribonuclease R [Listeria monocytogenes str. Scott A]
gi|293584683|gb|EFF96715.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|328471364|gb|EGF42261.1| ribonuclease R [Listeria monocytogenes J1-220]
gi|332312879|gb|EGJ25974.1| Ribonuclease R [Listeria monocytogenes str. Scott A]
gi|404219993|emb|CBY71357.1| ribonuclease R [Listeria monocytogenes ATCC 19117]
Length = 793
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVTQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|338210808|ref|YP_004654857.1| ribonuclease R [Runella slithyformis DSM 19594]
gi|336304623|gb|AEI47725.1| ribonuclease R [Runella slithyformis DSM 19594]
Length = 786
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/343 (27%), Positives = 150/343 (43%), Gaps = 60/343 (17%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D+ + + ID +A + DDALS L +G ++ IH+AD T Y+ PG+ +++A R
Sbjct: 279 RRDMRDITTFTIDPADAKDFDDALSVRFLDNGNYEIGIHIADVTHYVRPGTALEQEAYAR 338
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PEKL+ SLR E +V V + D I ++I
Sbjct: 339 ATSVYLVDRTVPMLPEKLSNNLCSLRPNEDKLTFSVVVEMTPDAKIKHEWFGRTVIHSDK 398
Query: 305 MLTYESATELLHLN------LEEEA------------ELKILSEAAALRLQWRLQQGAID 346
+YE A E+L + +EE EL +L+ A R +GA++
Sbjct: 399 RFSYEEAQEILEMQAATDKAAKEEGFVDLSAPLPYAKELTLLNTLALQLRAERFAKGAVN 458
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY--GSFNNLALP 404
T+E + ++ P + +Y + + D A +L+ E M+L + + + + A P
Sbjct: 459 FETVEVKFRLDEAGKP---LGIYTKVRKD-AHKLIEEFMLLANKRVPEFIQRQSKDKAHP 514
Query: 405 ----YRGQPQSNID----VSAFA--------------------HL-------PEGPVRSS 429
YR + +++ +AFA HL PE
Sbjct: 515 NTMVYRIHEEPDMEKLRVFAAFAGRLGYKLKLENEKVAAQSLNHLMEELEGKPEQNALEQ 574
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ M A A + V H L Y FTSPIRRY D++AH
Sbjct: 575 LAIRTM-AKARYSTEDVGHFGLAFRRYSHFTSPIRRYPDMMAH 616
>gi|153802961|ref|ZP_01957547.1| exoribonuclease II [Vibrio cholerae MZO-3]
gi|124121484|gb|EAY40227.1| exoribonuclease II [Vibrio cholerae MZO-3]
Length = 583
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 120/444 (27%), Positives = 193/444 (43%), Gaps = 55/444 (12%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 ----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
DG + + A+ I P VT + + I ++ Q +D L R+DLT
Sbjct: 139 LKGDDGFFVQISHKITDANDKIAPWWVTLAENNLPNSEPAGIDDW-QLKDDADLVREDLT 197
Query: 190 HLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID + ++DDAL A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYML 306
LP PM P LA E SL + +V A+ SV + DG I + + N IK L
Sbjct: 258 LPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARL 315
Query: 307 TYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
Y+ ++ L E+ + ++ L + R WR + + R +++
Sbjct: 316 VYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSA 375
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIAT---YGSFNNLA--------- 402
D ++ ++ D A RLV E MI +C G+ + T +G FN A
Sbjct: 376 DND---VVAIHA-DMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMAD 431
Query: 403 ----LPYRGQPQSNID----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ G P ++ + V FA L E + I K + I +P+ H
Sbjct: 432 VVELMTVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPH 490
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAH 472
+GL Y +TSPIR+Y D++ H
Sbjct: 491 FAMGLDVYATWTSPIRKYGDMINH 514
>gi|260663124|ref|ZP_05864016.1| ribonuclease R [Lactobacillus fermentum 28-3-CHN]
gi|260552316|gb|EEX25367.1| ribonuclease R [Lactobacillus fermentum 28-3-CHN]
Length = 797
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DLT + ID E+ +LDDA+ A +L +G + +H+AD + Y++PG+ D++A KR
Sbjct: 253 RLDLTDQPLVTIDSIESKDLDDAVVAWKLDNGNYHLGVHIADVSHYVQPGTPLDEEAFKR 312
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P +L+ SL GE A++ + + G+I + + S+I+
Sbjct: 313 GTSVYLTDRVIPMLPRRLSNGICSLNPGEERLAMSCEMEIDPQGNIVSHEIFPSVIRSHA 372
Query: 305 MLTYESATELLHLNLE----EEAELKILSEAAA----LRLQWRLQQGAIDTATLETRIKV 356
+TY+ +L + E E EL + E A + L+ R Q+GAID E +I V
Sbjct: 373 RMTYKGVNAILEAHDEKTRQEYKELVPMFETMADLHRILLKHRHQRGAIDFEAPEAKIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID-V 415
P ++ + D+ + R++ M+ E +A + ++ YR + + +
Sbjct: 433 DENGHP---TDIQLRDRG-LSERMIESFMLAANETVAKHYDLMHVPFLYRIHEHPDTERI 488
Query: 416 SAFAHL------------------------------PEGPVRSSAIVKIMRAAAIDFRKP 445
FA PE + + +++ M+ A
Sbjct: 489 KNFAEFLSVFGINMPGDLANVEPKMLQKVLKQVAGTPEEQMVQTMMLRSMQQAKYS-EDE 547
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ H LG Y FTSPIRRY D H
Sbjct: 548 LSHFGLGAQYYTHFTSPIRRYPDTTVH 574
>gi|251781952|ref|YP_002996254.1| exoribonuclease II [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242390581|dbj|BAH81040.1| exoribonuclease II [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 771
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 149/331 (45%), Gaps = 45/331 (13%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ R DL ID +A +LDDA+ L +G ++ +H+AD + Y+ GS DK+
Sbjct: 243 DLIGRVDLRQETTITIDGADAKDLDDAIHIKLLDNGNYELGVHIADVSYYVTEGSALDKE 302
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVL--HSDGSIAEYSVDNS 298
A++RGTSV++ PM PE+L+ SL + +T S ++ +S G + Y + S
Sbjct: 303 AVRRGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSALMEINSQGHVVNYQICQS 360
Query: 299 IIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL-------QWRLQQGAIDTATLE 351
+IK TY +TY + +++ + E E +++ L + R ++GA+D T E
Sbjct: 361 VIKTTYRMTYSTVNDIIAGDEEALQEFASIADDVTLMVALHRILEAMRSKRGALDFDTQE 420
Query: 352 TRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP 409
+I V + P + V Q A R++ M+ E +A + + L YR +P
Sbjct: 421 AKIIVNDKGMPVDV----VLRQRGIAERMIESFMLAANECVAEHFATAKLPFIYRIHEEP 476
Query: 410 Q-------------------------SNIDVSAFAHLPEG-PVRSSAIVKIMRAAAIDFR 443
+ S + AF EG P + ++R+
Sbjct: 477 KAEKLQKFMDYASIFGIQIQGTANKISQEALQAFMARVEGQPGAEVLNMMLLRSMQQARY 536
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 537 SEHNHGHYGLAAEYYTHFTSPIRRYPDLLVH 567
>gi|366090002|ref|ZP_09456368.1| ribonuclease R [Lactobacillus acidipiscis KCTC 13900]
Length = 800
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/354 (26%), Positives = 171/354 (48%), Gaps = 56/354 (15%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DLT + ID E+ +LDDA++ ++ +G + +H+AD + Y+ PG+ +++A +R
Sbjct: 261 REDLTDQNLVTIDSIESKDLDDAVNVWKMDNGNFHLGVHIADVSHYVTPGTALNREAFER 320
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLR-QGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
GTSV+L PM P KL+ SL E C A+T + + DG + ++ + SIIK T
Sbjct: 321 GTSVYLTDRVIPMLPPKLSNGICSLNPHVERC-AMTCEMEIDPDGHVVDHRIFPSIIKST 379
Query: 304 YMLTYESATELLHLN----LEEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIK 355
+TY + +++ + ++ A+L + ++E + L+ R ++GAI+ E +I
Sbjct: 380 ERMTYIAINKIVESHDQKTMDRYADLVPMFQDMAELHKILLKMRKRRGAIEFDDTEAKII 439
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY------RGQP 409
V P ++ + ++ + R+V M+ E +A + F+ L +P+ +P
Sbjct: 440 VDEQGHP---TDIQLRERG-TSERMVESFMLAANETVAAH--FHKLKVPFVYRIHESPKP 493
Query: 410 QS-----------NIDVSA----------------FAHLPEGPVRSSAIVKIMRAAAIDF 442
+ ++V+ A PE + S+ +++ M+ A
Sbjct: 494 EKIDTFFEMLGGLGVEVTGKKTEIKPKMLQNILKKVAGKPEEAMVSTMLLRSMQQAKYS- 552
Query: 443 RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVK 496
+P+ H + Y FTSPIRRY DL+ H + ++ G IGDE + K
Sbjct: 553 PEPLGHFGIAAADYTHFTSPIRRYPDLMVHRLIHF----YLENG--IGDEAQEK 600
>gi|291540043|emb|CBL13154.1| RNAse R [Roseburia intestinalis XB6B4]
Length = 712
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/387 (26%), Positives = 179/387 (46%), Gaps = 53/387 (13%)
Query: 130 AQRPDGKKNWMVYDQNGASCSIKPQQVTFVVP--GVEKFDHK--DISNFLQKAEDNLLNR 185
++P+GK ++ N I + +P EK H+ ++SN + A ++ R
Sbjct: 191 GRKPEGKVVEIIGHINDPGTDIMSIVKAYDLPVEFSEKIMHQVENVSNEVSTA--DMAGR 248
Query: 186 KDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRG 245
D + ID ++A +LDDA++ + D K+ +H+AD + Y++ S D +A+ RG
Sbjct: 249 MDFRDWQTVTIDGEDAKDLDDAITLTKEGDN-YKLGVHIADVSNYVQEHSALDVEALSRG 307
Query: 246 TSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSVDNSIIKPT 303
TSV+L PM P KL+ SL GE N +T+S V+ D G++ ++++ S+IK
Sbjct: 308 TSVYLVDRVIPMLPHKLSNGICSLNAGE--NRLTLSCVMTIDAKGNVIDHTIAESVIKVD 365
Query: 304 YMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++Y S ++L + E E +++ E AA+ + R+++G+ID ET+I
Sbjct: 366 RRMSYTSVKKILEDHDENEIREYEELVPMFELMQELAAILRKKRMKRGSIDFDFPETKIV 425
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID- 414
+ + P I + + A +++ + M++ E +A + L YR + +
Sbjct: 426 LDDKGKPVEIKPY----ERNVATKIIEDFMLIANETVAQDYFWQELPFVYRTHDNPDTEK 481
Query: 415 ---VSAF-------AHLPEGPVRSSAIVKIMRA------AAIDFRKPVR----------- 447
+S F H+ + V + K+++ A+ R +R
Sbjct: 482 IKKLSTFINNFGYSIHIGQDEVHPKELQKLLQKIDGTPEEALISRLTLRSMKQAKYTTMS 541
Query: 448 --HGVLGLPGYVQFTSPIRRYMDLLAH 472
H L P Y FTSPIRRY DL H
Sbjct: 542 TGHFGLATPYYCHFTSPIRRYPDLQIH 568
>gi|448239303|ref|YP_007403361.1| ribonuclease R [Geobacillus sp. GHH01]
gi|445208145|gb|AGE23610.1| ribonuclease R [Geobacillus sp. GHH01]
Length = 758
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 151/334 (45%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 TEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + + G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFP 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ +TY ++L E E ++++E A + R+++GAID
Sbjct: 360 SVIRTAERMTYSDVNKILVDKDEALREKYAPLVPMFELMAELADILRAKRIKRGAIDFDF 419
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 420 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHE 475
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 476 DPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQA 535
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 536 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 568
>gi|254828024|ref|ZP_05232711.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254913348|ref|ZP_05263360.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254937729|ref|ZP_05269426.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|386048115|ref|YP_005966447.1| ribonuclease R [Listeria monocytogenes J0161]
gi|258600408|gb|EEW13733.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258610332|gb|EEW22940.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293591353|gb|EFF99687.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|345535106|gb|AEO04547.1| ribonuclease R [Listeria monocytogenes J0161]
Length = 793
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + ++ +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|388579460|gb|EIM19783.1| RNB-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 1250
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 151/346 (43%), Gaps = 54/346 (15%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +NR+DL + + + ID D A +LDDA+S +DG + + +AD + +I+P S D
Sbjct: 666 EQEYMNRRDLRNERTFTIDPDTAKDLDDAVSIKLNEDGTYDITVSIADVSYFIKPNSALD 725
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
KDA KR TSV+L PM P L+ + SL + A +V+ + D + + +
Sbjct: 726 KDARKRATSVYLVQRAVPMLPSVLSSDLCSLLPDKERLAFSVTFTMTKDAKVIKTWYGRT 785
Query: 299 IIKPTYMLTYESATEL---------------LHLNLEEEAELKILSEAAALRLQWRLQQG 343
IIK L+Y++A + LH + E E ++K+L + + Q R G
Sbjct: 786 IIKSCAQLSYQNAQNVIEGKSLDAAKEKLSDLHSSDEIEGDIKVLFDLSRKLRQRRFDNG 845
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN---- 399
A+ +++ ++ D + V Q+ A L+ E M+L ++A+ + N
Sbjct: 846 ALKIDSMKLSFQL----DDNGVPIDCVAYQSREANNLIEEFMLLTNMSVASQIAVNLPEQ 901
Query: 400 --------------------------NLALPYRGQPQSNI----DVSAFAHLPEGPVRSS 429
++ + G Q + D A + L V+
Sbjct: 902 SLLRRHEDPIDRKLEGFKERAKDLGFDMDISSSGALQKSFSDIKDKEASSMLQVLAVKGM 961
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
K + AID +H L +P Y FTSPIRRY D++ H Q+
Sbjct: 962 CRAKYFCSGAIDI-SAYKHYALNVPLYTHFTSPIRRYADVIVHRQL 1006
>gi|406659413|ref|ZP_11067551.1| ribonuclease R [Streptococcus iniae 9117]
gi|405577522|gb|EKB51670.1| ribonuclease R [Streptococcus iniae 9117]
Length = 771
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 51/340 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ +L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SDKDLIGRVDLRQEITFTIDGADAKDLDDAIHIKRLDNGNFELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
D++A+ RGTSV++ PM PE+L+ SL + +T S ++ D G + + +
Sbjct: 305 DREAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEIDQNGHVLNHQI 362
Query: 296 DNSIIKPTYMLTYESATELL---HLNLEEEAEL-KILSEAAALRL---QWRLQQGAIDTA 348
S+I T+ +TY + E++ L+E A + + +++ AL R ++GA++
Sbjct: 363 CQSVINTTFRMTYSAVNEMIAGDDARLQEFATIVEPVNDMVALHKILEAMRTKRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQ 408
T E RI V P +++ V ++ A R++ M+ E +A + S L YR
Sbjct: 423 TSEARIIVNEKGLP---VDIVVRERG-IAERMIESFMLAANECVAEHFSKGKLPFIYRVH 478
Query: 409 PQ------------------------SNIDVSAFAHL-------PEGPVRSSAIVKIMRA 437
+ SNI A P V + +++ M+
Sbjct: 479 EEPKSEKLQKFIDYASLFGVQIKGTASNISQEALQTFMAKIEGKPGAEVLNMMLLRSMQQ 538
Query: 438 AAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
A HG GL Y FTSPIRRY DLL H +
Sbjct: 539 ARY---SETNHGHYGLAANYYTHFTSPIRRYPDLLVHRMI 575
>gi|393782655|ref|ZP_10370838.1| ribonuclease R [Bacteroides salyersiae CL02T12C01]
gi|392672882|gb|EIY66348.1| ribonuclease R [Bacteroides salyersiae CL02T12C01]
Length = 713
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 43/326 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+D + + ID +A + DDALS +L+D +V +H+AD T Y++ GS+ DK+A KR
Sbjct: 259 REDFRKVTTFTIDPKDAKDFDDALSIRKLKDNLWEVGVHIADVTHYVKEGSIIDKEAEKR 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
TSV+L T PM PE+L SLR E A +V + G + V +++I
Sbjct: 319 ATSVYLVDRTIPMLPERLCNFLCSLRPHEEKLAFSVIFDITEKGDVKNSRVVHTVIYSDR 378
Query: 305 MLTYESATELLHL-NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
TYE A +++ N + + E+ +L A + R GAI+ E + ++ P
Sbjct: 379 RFTYEEAQQIIETKNGDFKDEVLMLDTIAKALREKRFAAGAINFDRYEVKFEIDEKGKP- 437
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATY-----GSFNNLALPYR----GQPQ---- 410
+++Y ++ D A +LV E M+L +A LPYR P+
Sbjct: 438 --VSVYFKESKD-ANKLVEEFMLLANRTVAEQIGRVPKGKKAKVLPYRIHDLPDPEKLDN 494
Query: 411 ----------------SNIDVS-AFAHL-------PEGPVRSSAIVKIMRAAAIDFRKPV 446
+ D+S + HL E + + ++ M+ A +
Sbjct: 495 LNQFIARFGYKLRTSGTKTDISKSINHLLDDIQGKKEENLIETVSIRAMQKARYSTHN-I 553
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L Y FTSPIRR+ D++ H
Sbjct: 554 GHYGLAFDYYTHFTSPIRRFPDMMVH 579
>gi|297580173|ref|ZP_06942100.1| exoribonuclease II [Vibrio cholerae RC385]
gi|297535819|gb|EFH74653.1| exoribonuclease II [Vibrio cholerae RC385]
Length = 678
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVMRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVLELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|336433102|ref|ZP_08612930.1| ribonuclease R [Lachnospiraceae bacterium 2_1_58FAA]
gi|336017311|gb|EGN47074.1| ribonuclease R [Lachnospiraceae bacterium 2_1_58FAA]
Length = 713
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 48/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID ++A +LDDA+S +++G K+ +H+AD T Y++ S
Sbjct: 245 SEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSLTEVENG-WKLGVHIADVTNYVQEKSAL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P KL+ SL GE A++ + + G I ++ +
Sbjct: 304 DREALKRGTSVYLADRVIPMLPHKLSNGICSLNAGENRLALSCIMTVDKKGEIVDHVIAE 363
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
++I+ ++Y S ++L E+E + + ++E + L + R ++GAID
Sbjct: 364 TVIRVDQRMSYTSVAKILEAQDEQERQKYEKLVPMFEQMAEVSGLLRERRKKRGAIDFDF 423
Query: 350 LETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
ET++ + P + +P + + A +++ + M+ E +A + + YR
Sbjct: 424 PETKMILDEQGRPVELKPY-------ERNVATKMIEDFMLAANETVAEEYFWREIPFLYR 476
Query: 407 GQPQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRAA------------AIDFRK 444
D +S F H+ G +R I K++ A+ K
Sbjct: 477 THEAPEEDKVKKLSTFINNFGYHIHMGNEIRPKEIQKLLEKVEGTPQEALISRLALRSMK 536
Query: 445 PVRH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
R+ G GL Y FTSPIRRY DL H
Sbjct: 537 QARYTPENAGHFGLAAQYYTHFTSPIRRYPDLQIH 571
>gi|297171662|gb|ADI22656.1| exoribonuclease R [uncultured Gemmatimonadales bacterium
HF0500_22O06]
Length = 708
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 145/330 (43%), Gaps = 39/330 (11%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R D T L ++ ID EA + DD LS + L GR +V +H+AD + ++ L D
Sbjct: 243 DPGIKRVDRTDLCIFTIDPAEAKDHDDGLSVVALGQGRFEVGVHIADVSHFVRESGLVDV 302
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSI 299
+A+ RGTSV+L T PM PE L+ + SL+ G +++ + L G I + + +
Sbjct: 303 EALSRGTSVYLVDRTIPMLPEVLSSDVCSLKSGVERFTLSLFIELDQAGRIYRHRYERAC 362
Query: 300 IKPTYMLTYESATELLH----LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
++ +YE +L +N + + L L + A + R +GA+D E K
Sbjct: 363 VRSRGQFSYEQVQSVLDGSAGINEDIDQALHTLDDLARSLRKVRTDRGALDLNIPEA--K 420
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--------- 406
V E+ PI Q + RLV + MIL E +A L YR
Sbjct: 421 VVLDENGHPID--IQRSQRLESHRLVEDFMILANEVVAADMETRELFAIYRIHEPPMRES 478
Query: 407 -------------GQPQSNI----DVSAFAHLPEG-PVR---SSAIVKIMRAAAIDFRKP 445
G P+ D+ G PV S +++ + A D R
Sbjct: 479 TEGLRELLTRVGYGLPKRRSLKPKDLQRLLDQVRGRPVEALISRVVLRSLSKARYDTRN- 537
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
+ H L P Y+ FTSPIRRY DL+ H ++
Sbjct: 538 LSHFGLASPAYLHFTSPIRRYPDLMVHREI 567
>gi|154503018|ref|ZP_02040078.1| hypothetical protein RUMGNA_00840 [Ruminococcus gnavus ATCC 29149]
gi|153796372|gb|EDN78792.1| ribonuclease R [Ruminococcus gnavus ATCC 29149]
Length = 713
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 157/335 (46%), Gaps = 48/335 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E ++ R DL ++ ID ++A +LDDA+S +++G K+ +H+AD T Y++ S
Sbjct: 245 SEADMAGRMDLRDWQMVTIDGEDAKDLDDAVSLTEVENG-WKLGVHIADVTNYVQEKSAL 303
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KRGTSV+L PM P KL+ SL GE A++ + + G I ++ +
Sbjct: 304 DREALKRGTSVYLADRVIPMLPHKLSNGICSLNAGENRLALSCIMTVDKKGEIVDHVIAE 363
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
++I+ ++Y S ++L E+E + + ++E + L + R ++GAID
Sbjct: 364 TVIRVDQRMSYTSVAKILEAQDEQERQKYEKLVPMFEQMAEVSGLLRERRKKRGAIDFDF 423
Query: 350 LETRI---KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
ET++ + P + +P + + A +++ + M+ E +A + + YR
Sbjct: 424 PETKMILDEQGRPVELKPY-------ERNVATKMIEDFMLAANETVAEEYFWREIPFLYR 476
Query: 407 GQPQSNID----VSAFA-----HLPEG-PVRSSAIVKIMRAA------------AIDFRK 444
D +S F H+ G +R I K++ A+ K
Sbjct: 477 THEAPEEDKVKKLSTFINNFGYHIHMGNEIRPKEIQKLLEKVEGTPQEALISRLALRSMK 536
Query: 445 PVRH-----GVLGLPG--YVQFTSPIRRYMDLLAH 472
R+ G GL Y FTSPIRRY DL H
Sbjct: 537 QARYTPENAGHFGLAAQYYTHFTSPIRRYPDLQIH 571
>gi|229526684|ref|ZP_04416088.1| exoribonuclease II [Vibrio cholerae bv. albensis VL426]
gi|229336842|gb|EEO01860.1| exoribonuclease II [Vibrio cholerae bv. albensis VL426]
Length = 678
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 120/444 (27%), Positives = 194/444 (43%), Gaps = 55/444 (12%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 ----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
DG + + A+ I P VT + + I+++ Q +D L R+DLT
Sbjct: 139 LKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIADW-QLKDDADLVREDLT 197
Query: 190 HLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID + ++DDAL A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYML 306
LP PM P LA E SL + +V A+ SV + DG I + + N IK L
Sbjct: 258 LPGHNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARL 315
Query: 307 TYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
Y+ ++ L E+ + ++ L + R WR + + R +++
Sbjct: 316 VYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSA 375
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIAT---YGSFNNLA--------- 402
D ++ ++ D A RLV E MI +C G+ + T +G FN A
Sbjct: 376 DND---VVAIHA-DMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMAD 431
Query: 403 ----LPYRGQPQSNID----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ G P ++ + V FA L E + I K + I +P+ H
Sbjct: 432 VVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPH 490
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAH 472
+GL Y +TSPIR+Y D++ H
Sbjct: 491 FAMGLDVYATWTSPIRKYGDMINH 514
>gi|47567335|ref|ZP_00238048.1| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241]
gi|47555956|gb|EAL14294.1| exoribonuclease, VacB/RNase II family [Bacillus cereus G9241]
Length = 793
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 50/337 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+E++L +R+DL + ID +A +LDDA++ +L++G K+ +H+AD + Y++ GS
Sbjct: 230 SEEDLKDRRDLRDQMIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSHYVQEGSPI 289
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A +R TSV+L PM P +L+ SL ++ + +++ G + ++ +
Sbjct: 290 DVEAAERATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINNLGDVVKHEIFQ 349
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAEL-----------KILSEAAALRLQWRLQQGAID 346
S+IK T +TY +L +E+ EL K + + A + + R+++GAID
Sbjct: 350 SVIKTTERMTYADVRSILE---DEDEELIKRYEPLVPMFKEMGQLAQILREKRMRRGAID 406
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
E ++ V P ++ + D++ + +L+ E M++ E +A + + N+ YR
Sbjct: 407 FDFKEAKVLVDEEGKPTDVV---MGDRS-VSEKLIEEFMLVANETVAEHFHWMNVPFMYR 462
Query: 407 GQPQSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIM 435
D V+ F + PE V S+ +++ M
Sbjct: 463 VHEDPKEDKLERFFEFVTNFGYAVKGRANEVHPRALQQILEMVQGQPEEVVISTVMLRSM 522
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A D + H L Y FTSPIRRY D + H
Sbjct: 523 KQARYD-ADSLGHFGLSTEFYTHFTSPIRRYPDTIVH 558
>gi|257785072|ref|YP_003180289.1| VacB and RNase II family 3'-5' exoribonuclease [Atopobium parvulum
DSM 20469]
gi|257473579|gb|ACV51698.1| VacB and RNase II family 3'-5' exoribonuclease [Atopobium parvulum
DSM 20469]
Length = 670
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 154/341 (45%), Gaps = 52/341 (15%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AED +R DL +D +A + DDA+ A +L+DG ++++H+AD Y++ S
Sbjct: 199 AEDA--SRHDLREELCITVDPADAKDFDDAVGARKLEDGSFELWVHIADVAHYVKWDSPI 256
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D +A R S +L PM PEKL + SLR E A++V + L S G I + N
Sbjct: 257 DLEARMRTCSAYLVDRVLPMLPEKLCNDVCSLRPAEDRLAMSVKMKLSSSGKILGATAMN 316
Query: 298 SIIKPTYMLTYESATELLH---------LNLEEEAELK----ILSEAAALRLQWRLQQGA 344
S+I+ L+Y+ L ++ E+ +K +L++ ALR + R ++G+
Sbjct: 317 SVIRSRARLSYDQVDSYLQGDVSALDSAVSREDAGAIKEMIDVLNQIRALREEIREKRGS 376
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
+D ++ETR+ + P + + V ++ A L+ E M+ E++A S ++L
Sbjct: 377 VDFESVETRVVLDENNKP---VGVSVRERTQ-ATGLIEEAMLAANESVAHMLSQHDLESA 432
Query: 405 YRGQPQ------------------------SNIDVSAFAHLPEG-----PVRSSAIV--K 433
YR Q S I + L E R S +V +
Sbjct: 433 YRVHEQPSPESLKLAITPLVAMGALEPDVASRIAIGDQTALQEALESVHGTRYSRVVNAQ 492
Query: 434 IMRAAAIDFRKPVRHG--VLGLPGYVQFTSPIRRYMDLLAH 472
++RA P G LG Y FTSPIRRY D++ H
Sbjct: 493 LLRAQKRAIYLPTNQGHFALGADAYCHFTSPIRRYPDVIVH 533
>gi|261420483|ref|YP_003254165.1| ribonuclease R [Geobacillus sp. Y412MC61]
gi|319768154|ref|YP_004133655.1| ribonuclease R [Geobacillus sp. Y412MC52]
gi|261376940|gb|ACX79683.1| ribonuclease R [Geobacillus sp. Y412MC61]
gi|317113020|gb|ADU95512.1| ribonuclease R [Geobacillus sp. Y412MC52]
Length = 758
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 151/334 (45%), Gaps = 44/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+DL + ID ++A +LDDA++ +L++G K+ +H+AD + Y+E GS
Sbjct: 240 TEKDLEGRRDLRGEMIVTIDGEDAKDLDDAVTVTKLENGNYKLGVHIADVSYYVEEGSPI 299
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A +RGTSV+L PM P +L+ SL ++ + + G + + +
Sbjct: 300 DREAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEITPQGEVVRHEIFP 359
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTAT 349
S+I+ +TY ++L E E ++++E A + R+++GAID
Sbjct: 360 SVIRTAERMTYSDVNKILVDKDEALREKYGPLVPMFELMAELADILRAKRMKRGAIDFDF 419
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E ++ V P + V + A RL+ E M+ E +A + + N+ YR
Sbjct: 420 KEAKVLVDENGKPYDV----VLRERSVAERLIEEFMLAANETVAEHFHWLNVPFIYRVHE 475
Query: 410 QSNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAA 438
+ ++ F ++ PE V S+ +++ M+ A
Sbjct: 476 DPKPEKLQRFLEFITNFGYVVKGTGNQIHPRALQQILEAVRGEPEEMVISTVMLRSMKQA 535
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
D +G L Y FTSPIRRY DL+ H
Sbjct: 536 RYDAESLGHYG-LSTEFYTHFTSPIRRYPDLIVH 568
>gi|418967450|ref|ZP_13519113.1| ribonuclease R [Streptococcus mitis SK616]
gi|383344063|gb|EID22233.1| ribonuclease R [Streptococcus mitis SK616]
Length = 784
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 55/339 (16%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSTIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ E ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRQEYQKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGVAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNIDVSAFAHL------------------------PEGPVRSSAIVKIM 435
+P Q ID ++ L P V S +++ M
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEVLQDIMSTVEGEPYADVLSMMLLRSM 534
Query: 436 RAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+ A HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHN---HGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|418027025|ref|ZP_12665735.1| Hydrolase acting on ester bonds [Streptococcus thermophilus CNCM
I-1630]
gi|354693337|gb|EHE93108.1| Hydrolase acting on ester bonds [Streptococcus thermophilus CNCM
I-1630]
Length = 561
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 153 SQEDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNYELGVHIADVSYYVTEGSAL 212
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A RGTSV++ PM PE+L+ SL + +T+S ++ G + + +
Sbjct: 213 NREAAARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTLSAIMEITPKGKVINHKI 270
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+IK T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 271 CQSVIKTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 330
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V + P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 331 TSEARILVNDKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 386
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 387 EEPKAEKLQRFMDYASIFGIQIKGTANKMDQLDLQDFMARVQGKPGAEVMNMMLLRSMQQ 446
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H +
Sbjct: 447 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMI 483
>gi|445063917|ref|ZP_21376053.1| exoribonuclease R [Brachyspira hampsonii 30599]
gi|444504702|gb|ELV05328.1| exoribonuclease R [Brachyspira hampsonii 30599]
Length = 579
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 152/321 (47%), Gaps = 39/321 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL LK ID + + +LDDA S + + KVYIH++D + +IE S D +A
Sbjct: 131 DRIDLRSLKTITIDSESSKDLDDAFSIEKTDN--YKVYIHISDVSHFIELDSPLDLEARA 188
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L Y MFPE L+ +SL + E A+T ++++G I SV S+I+
Sbjct: 189 RGNSTYLIDTVYNMFPEILSNNIISLNENEDRFAITFIADINNEGEILSSSVCKSVIRSD 248
Query: 304 YMLTYESATELLHLNLEEEAE----LKILSEAAALR-LQWRLQQGAIDTATLETRIKVAN 358
L+Y+ A +L+ +EE++ L++++ A ++ + ++ ++ IK+
Sbjct: 249 RKLSYDYAEKLIK---KEESDEDWLLELINNALNIKNILYKKRKEGRGVEFENQDIKIVL 305
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNNLALPYRG---------- 407
++ P I Y E++ + +M ++ E+M+L IA S++ + Y G
Sbjct: 306 NDEGMP-IEFYAEEKKE-SMAIIEELMLLANSKIAEKLSSYDGVIYRYHGLPDEYRFNNF 363
Query: 408 -------------QPQSNIDVSAFAHLPEG-PVRSSAIVKIMRAAAIDFRKPVR--HGVL 451
P D+ F +G P + I ++R+ V H L
Sbjct: 364 KILAHTKGYNLKENPDKTYDIKGFIDNIKGKPEENLLIPVLLRSMTPSSYSIVNKSHFGL 423
Query: 452 GLPGYVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DLL H
Sbjct: 424 GLDYYTYFTSPIRRYADLLIH 444
>gi|405759498|ref|YP_006688774.1| ribonuclease R [Listeria monocytogenes SLCC2479]
gi|404237380|emb|CBY58782.1| ribonuclease R [Listeria monocytogenes SLCC2479]
Length = 793
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDIE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + ++ +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEINQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|257867447|ref|ZP_05647100.1| 3'-5' exoribonuclease [Enterococcus casseliflavus EC30]
gi|257873777|ref|ZP_05653430.1| 3'-5' exoribonuclease [Enterococcus casseliflavus EC10]
gi|257801503|gb|EEV30433.1| 3'-5' exoribonuclease [Enterococcus casseliflavus EC30]
gi|257807941|gb|EEV36763.1| 3'-5' exoribonuclease [Enterococcus casseliflavus EC10]
Length = 786
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID +A +LDDA++ L DG + +H+AD + Y+ S DK+A +R
Sbjct: 259 RRDLRDQQIVTIDGADAKDLDDAVTVKALPDGSFYLGVHIADVSYYVTENSALDKEAFER 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL A++ + ++ +G + +Y++ SII+ +
Sbjct: 319 GTSVYLTDRVIPMIPQRLSNGICSLNPNVPRLAMSCEMWINQEGIVTDYNIFQSIIQTSA 378
Query: 305 MLTYESATELLHLNLEEEAE-----LKILSEAAALRL---QWRLQQGAIDTATLETRIKV 356
+TY++ +++ N E ++ + + + AAL R+++GA+ E ++ V
Sbjct: 379 RMTYQAVNQIIEDNDPETSKEYGELVPMFHDMAALHHVLETMRIKRGAVSFEDREAKVLV 438
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP----- 409
P+ I V + RL+ M+ E +A + + +L YR +P
Sbjct: 439 DGEGHPQEI----VLRERGVGERLIESFMLAANETVARHFNRKHLPFIYRIHEEPKEEKM 494
Query: 410 ---------------QSNIDVSA---------FAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
Q+N +S A PE V ++ +++ M+ A +
Sbjct: 495 RRFFDFASALGIVIKQTNGSISPKQLQKVVEDVADKPEAMVVNTMLLRSMQQAKYS-EEN 553
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY DL+ H
Sbjct: 554 VGHYGLAAEDYTHFTSPIRRYPDLIVH 580
>gi|46908622|ref|YP_015011.1| ribonuclease R [Listeria monocytogenes serotype 4b str. F2365]
gi|47093651|ref|ZP_00231407.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
gi|258611891|ref|ZP_05242896.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300765222|ref|ZP_07075207.1| ribonuclease R [Listeria monocytogenes FSL N1-017]
gi|46881894|gb|AAT05188.1| putative ribonuclease R [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017986|gb|EAL08763.1| ribonuclease R, putative [Listeria monocytogenes str. 4b H7858]
gi|258606921|gb|EEW19529.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|300514043|gb|EFK41105.1| ribonuclease R [Listeria monocytogenes FSL N1-017]
Length = 783
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 235 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 294
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 295 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 354
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 355 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 414
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 415 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 470
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 471 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 530
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 531 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 560
>gi|226224997|ref|YP_002759104.1| exoribonuclease RNase-R [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386733133|ref|YP_006206629.1| ribonuclease R [Listeria monocytogenes 07PF0776]
gi|404282005|ref|YP_006682903.1| ribonuclease R [Listeria monocytogenes SLCC2755]
gi|404287819|ref|YP_006694405.1| ribonuclease R [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405753656|ref|YP_006677121.1| ribonuclease R [Listeria monocytogenes SLCC2378]
gi|405756561|ref|YP_006680025.1| ribonuclease R [Listeria monocytogenes SLCC2540]
gi|406705184|ref|YP_006755538.1| ribonuclease R [Listeria monocytogenes L312]
gi|225877459|emb|CAS06173.1| Putative exoribonuclease RNase-R [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|384391891|gb|AFH80961.1| ribonuclease R [Listeria monocytogenes 07PF0776]
gi|404222856|emb|CBY74219.1| ribonuclease R [Listeria monocytogenes SLCC2378]
gi|404225761|emb|CBY77123.1| ribonuclease R [Listeria monocytogenes SLCC2540]
gi|404228640|emb|CBY50045.1| ribonuclease R [Listeria monocytogenes SLCC2755]
gi|404246748|emb|CBY04973.1| ribonuclease R [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406362214|emb|CBY68487.1| ribonuclease R [Listeria monocytogenes L312]
Length = 793
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|125624126|ref|YP_001032609.1| exoribonuclease R [Lactococcus lactis subsp. cremoris MG1363]
gi|389854477|ref|YP_006356721.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
NZ9000]
gi|124492934|emb|CAL97897.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
MG1363]
gi|300070899|gb|ADJ60299.1| putative exoribonuclease R [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 667
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 144/336 (42%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
+++L R+D + Y ID +++ +LDDA+ +L +G ++ +H+AD + Y+ GS
Sbjct: 195 TQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVHIADVSHYVTEGSSL 254
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
+++A R TSV++ PM P +L+ SL E +T+S ++ D G I Y +
Sbjct: 255 NEEAYARATSVYVTDRVVPMLPVRLSNNLCSL--NEAQERLTMSCLMEIDDKGKIITYKI 312
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWRLQQGA 344
S+IK TY +TY + +++H E E +++ E + R +G
Sbjct: 313 SPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKYSKIADSIEVAVELHEILETMRKDRGM 372
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I+ E +I + + P I V+ D A R++ M++ E +A F LP
Sbjct: 373 IEFDESEAKIILDDEGYPIEI----VKRDRDTAERMIESFMLMANETVAL--DFQKKKLP 426
Query: 405 YRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF---------------------- 442
+ AFA L E + + AI+F
Sbjct: 427 SLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKDTSFEKALTYQLRHTM 486
Query: 443 ------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K +H L Y FTSPIRRY DL+ H
Sbjct: 487 STAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 522
>gi|254993184|ref|ZP_05275374.1| exoribonuclease RNase-R [Listeria monocytogenes FSL J2-064]
Length = 793
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLSNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQHLAEILHRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEDGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|424715262|ref|YP_007015977.1| Ribonuclease R [Listeria monocytogenes serotype 4b str. LL195]
gi|424014446|emb|CCO64986.1| Ribonuclease R [Listeria monocytogenes serotype 4b str. LL195]
Length = 803
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 147/333 (44%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 255 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 314
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 315 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDEEGHVVNHEIFESII 374
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + + A + + R ++GAID E
Sbjct: 375 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEKMQDLAEILRRKREKRGAIDFDFKEA 434
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE ++ + L+ E M+ E +A + + ++ YR
Sbjct: 435 RVVVDEDGHPEAVVMR----ERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 490
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 491 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 550
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 551 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 580
>gi|317130203|ref|YP_004096485.1| ribonuclease R [Bacillus cellulosilyticus DSM 2522]
gi|315475151|gb|ADU31754.1| ribonuclease R [Bacillus cellulosilyticus DSM 2522]
Length = 792
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 177/405 (43%), Gaps = 64/405 (15%)
Query: 121 DSDRVLLAVAQRPDGKKNW------MVYDQNGASCSIKPQQVTFVVPG---VEKFDHKD- 170
D +VL+ + + P+G+ + ++ +N I +PG E DH +
Sbjct: 174 DGHKVLVEIVKYPEGRMSAEGHVLEVLGHKNDPGVDILSVIYKHGLPGEFDQETLDHANS 233
Query: 171 ISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKY 230
+ N + +E L NR+DL + ID +A +LDDA+ +L++G + +H+AD + Y
Sbjct: 234 VPNEIDPSE--LENRRDLRDETIVTIDGADAKDLDDAVQVKKLENGNYLLGVHIADVSYY 291
Query: 231 IEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI 290
++ S DK+A +R TS +L PM P +L+ SL ++ ++ +G +
Sbjct: 292 VKENSPIDKEAAERATSCYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCNMEFSPNGEL 351
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQ 342
+ + S+I T +TY ++L EE ++ K + E A + R+ +
Sbjct: 352 VNHEIFQSVINTTERMTYTDVRKILQEEDEEVSKRYESLIPFFKGMEELAEILRNKRMAR 411
Query: 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLA 402
GAID E ++ V P + V + A RL+ E M+ E IA + F+ +
Sbjct: 412 GAIDFDFKEAKVLVDEDGTPTDV----VMRERSVAERLIEEFMLAANETIAEH--FHWMK 465
Query: 403 LPYRGQPQSNID----------VSAFAHL-----------------------PEGPVRSS 429
+P+ + + D ++ F ++ PE V S+
Sbjct: 466 VPFMYRIHEDPDEEKLNKFLEFITNFGYVVKGAANTVHPRALQELLDQVKGEPEEAVIST 525
Query: 430 AIVKIMRAAAIDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+++ MR A D P G GL Y FTSPIRRY DL+ H
Sbjct: 526 VMLRSMRQAKYD---PENVGHFGLSADFYTHFTSPIRRYPDLIVH 567
>gi|444405236|ref|ZP_21202152.1| ribonuclease R [Streptococcus pneumoniae PNI0009]
gi|444274907|gb|ELU80547.1| ribonuclease R [Streptococcus pneumoniae PNI0009]
Length = 784
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+G GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNYGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|298372925|ref|ZP_06982915.1| ribonuclease R [Bacteroidetes oral taxon 274 str. F0058]
gi|298275829|gb|EFI17380.1| ribonuclease R [Bacteroidetes oral taxon 274 str. F0058]
Length = 713
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 150/333 (45%), Gaps = 43/333 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
ED + R D + ID +A + DDALS L DG +V +H+AD T ++ G +
Sbjct: 247 TEDEIKRRIDFRTTTTFTIDPRDAKDFDDALSIKDLGDGLWEVGVHIADVTHFVPEGGII 306
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+KR TSV+L T PM PE L+ SLR E + ++ + +Y +
Sbjct: 307 DQEAVKRATSVYLVDRTVPMLPEHLSNFICSLRPDEEKLTYSCIFTINDLAEVIDYKIAR 366
Query: 298 SIIKPTYMLTYESATELLHLNLEEEA-ELKILSEAAALRLQWRLQQGAIDTATLETRIKV 356
++IK TYE A E++ + A E+ L++ A + R GAI E R ++
Sbjct: 367 TVIKSDRRFTYEEAQEIIETGKGDFATEVLRLNDLAKKLREKRFASGAIAFERSEVRFEI 426
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-GSFNNLALP----YRGQPQS 411
+ P ++++ ++ D + +L+ E M+L + +A + G N P YR
Sbjct: 427 DDTGKP---VSVFFKESKD-SNKLIEEFMLLANKYVAQHIGMPRNREKPKTFVYRIHDVP 482
Query: 412 NID-VSAFA------------------------HL---PEGPVRSSAI----VKIMRAAA 439
N + +S FA HL EG + I ++ M AA
Sbjct: 483 NPEKLSNFATFIKKFGYKIKTDGKKTAVSSSINHLLDQIEGKKEQNMIETLAIRSMAKAA 542
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K + H L + Y FTSPIRRY D++ H
Sbjct: 543 YS-TKNIGHYGLAMKYYTHFTSPIRRYPDMMVH 574
>gi|225856633|ref|YP_002738144.1| ribonuclease R [Streptococcus pneumoniae P1031]
gi|444388413|ref|ZP_21186398.1| ribonuclease R [Streptococcus pneumoniae PCS125219]
gi|444389892|ref|ZP_21187807.1| ribonuclease R [Streptococcus pneumoniae PCS70012]
gi|444393374|ref|ZP_21191026.1| ribonuclease R [Streptococcus pneumoniae PCS81218]
gi|444395874|ref|ZP_21193413.1| ribonuclease R [Streptococcus pneumoniae PNI0002]
gi|444397434|ref|ZP_21194917.1| ribonuclease R [Streptococcus pneumoniae PNI0006]
gi|444400525|ref|ZP_21197919.1| ribonuclease R [Streptococcus pneumoniae PNI0007]
gi|444401913|ref|ZP_21199092.1| ribonuclease R [Streptococcus pneumoniae PNI0008]
gi|444408650|ref|ZP_21205283.1| ribonuclease R [Streptococcus pneumoniae PNI0010]
gi|444409446|ref|ZP_21206038.1| ribonuclease R [Streptococcus pneumoniae PNI0076]
gi|444411670|ref|ZP_21207998.1| ribonuclease R [Streptococcus pneumoniae PNI0153]
gi|444415969|ref|ZP_21212183.1| ribonuclease R [Streptococcus pneumoniae PNI0199]
gi|444418608|ref|ZP_21214579.1| ribonuclease R [Streptococcus pneumoniae PNI0360]
gi|444421227|ref|ZP_21216975.1| ribonuclease R [Streptococcus pneumoniae PNI0427]
gi|444422356|ref|ZP_21218013.1| ribonuclease R [Streptococcus pneumoniae PNI0446]
gi|225726254|gb|ACO22106.1| ribonuclease R [Streptococcus pneumoniae P1031]
gi|444249470|gb|ELU55960.1| ribonuclease R [Streptococcus pneumoniae PCS125219]
gi|444255875|gb|ELU62215.1| ribonuclease R [Streptococcus pneumoniae PNI0002]
gi|444256355|gb|ELU62693.1| ribonuclease R [Streptococcus pneumoniae PCS70012]
gi|444260091|gb|ELU66399.1| ribonuclease R [Streptococcus pneumoniae PNI0006]
gi|444261030|gb|ELU67337.1| ribonuclease R [Streptococcus pneumoniae PCS81218]
gi|444266113|gb|ELU72085.1| ribonuclease R [Streptococcus pneumoniae PNI0007]
gi|444267384|gb|ELU73289.1| ribonuclease R [Streptococcus pneumoniae PNI0008]
gi|444269477|gb|ELU75284.1| ribonuclease R [Streptococcus pneumoniae PNI0010]
gi|444275567|gb|ELU81189.1| ribonuclease R [Streptococcus pneumoniae PNI0153]
gi|444278552|gb|ELU83994.1| ribonuclease R [Streptococcus pneumoniae PNI0199]
gi|444279484|gb|ELU84880.1| ribonuclease R [Streptococcus pneumoniae PNI0076]
gi|444281037|gb|ELU86373.1| ribonuclease R [Streptococcus pneumoniae PNI0360]
gi|444282950|gb|ELU88172.1| ribonuclease R [Streptococcus pneumoniae PNI0427]
gi|444288286|gb|ELU93183.1| ribonuclease R [Streptococcus pneumoniae PNI0446]
Length = 784
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGESYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
+G GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNYGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|386054636|ref|YP_005972194.1| ribonuclease R [Listeria monocytogenes Finland 1998]
gi|346647287|gb|AEO39912.1| ribonuclease R [Listeria monocytogenes Finland 1998]
Length = 793
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|229514240|ref|ZP_04403701.1| exoribonuclease II [Vibrio cholerae TMA 21]
gi|229348220|gb|EEO13178.1| exoribonuclease II [Vibrio cholerae TMA 21]
Length = 678
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDKMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|403387321|ref|ZP_10929378.1| ribonuclease R [Clostridium sp. JC122]
Length = 712
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 156/332 (46%), Gaps = 43/332 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ RKDL LK+ ID ++A +LDDA+S L++G K+ +H+AD + Y+ S D
Sbjct: 238 ENEYKRRKDLRDLKMVTIDGEDAKDLDDAVSVEVLRNGNFKLGVHIADVSHYVTEKSNLD 297
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A+KRG SV+L PM P+KL+ SL ++ + ++++G + ++ + S
Sbjct: 298 KEALKRGNSVYLIDRVIPMLPKKLSNGVCSLNPKVDRLTLSCFMEINNEGKVVDHEICES 357
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
IIK +TY T++L N +E E K + + + R ++G+ID
Sbjct: 358 IIKTNERMTYTDVTKILRDNDKETIERYDYLYEDFKNMEKLYEILNSRRTRRGSIDFEFD 417
Query: 351 ETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
E +I + E+ +PI I Y + + R++ E M++ E +A + + N YR
Sbjct: 418 EAKIIL--DENGKPIDIKPY---ERAVSNRIIEEFMLVANETVAEHMFWLNTPFVYRVHE 472
Query: 410 QSN----IDVSAFAHLPEGPVRSSAIVK-----------------------IMRAAAIDF 442
+ ++ + F + +R+++ V ++R+
Sbjct: 473 DPDEEKLMNFNEFVYNLGYFIRNTSEVHPRMLQDILEKVKGKKEEHVVSRLLLRSMMKAK 532
Query: 443 RKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 533 YSPECLGHFGLAAKYYCHFTSPIRRYPDLIIH 564
>gi|168485927|ref|ZP_02710435.1| ribonuclease R [Streptococcus pneumoniae CDC1087-00]
gi|419510597|ref|ZP_14050241.1| ribonuclease R [Streptococcus pneumoniae NP141]
gi|183571058|gb|EDT91586.1| ribonuclease R [Streptococcus pneumoniae CDC1087-00]
gi|379633790|gb|EHZ98359.1| ribonuclease R [Streptococcus pneumoniae NP141]
Length = 784
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 157/336 (46%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R DL + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLDLRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDT----VLRQRGIAERIIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|417322260|ref|ZP_12108794.1| exoribonuclease II [Vibrio parahaemolyticus 10329]
gi|328470414|gb|EGF41325.1| exoribonuclease II [Vibrio parahaemolyticus 10329]
Length = 668
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 164/366 (44%), Gaps = 47/366 (12%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I N+ K +D L R D+TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERIDMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAEY-SVDNSIIKPTYMLTYESATELLHLN------- 318
SL +GE+ A+ +V + DG I +Y + IK L Y+ ++ L
Sbjct: 275 CSLIEGEIRPAICCTVTVSKDGVIGDYIKFFAANIKSHARLAYDHVSDWLENGNSDAWQP 334
Query: 319 LEEEAEL-KILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
EE A + + L E + R +WR + + + R +++ D +I ++ D A
Sbjct: 335 SEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDND---VIAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LCG-----EAIATYGSFNNLA--LPYRGQ-------PQSNIDVSA--F 418
RLV E MI +C E T G FN A P + + P+ ++ +A
Sbjct: 391 NRLVEESMITANICAGRTLREKFET-GVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESI 449
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRY 466
A L EG + + + +D R +P+ H +GL Y +TSPIR+Y
Sbjct: 450 ATL-EGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKY 508
Query: 467 MDLLAH 472
D++ H
Sbjct: 509 GDMINH 514
>gi|284802888|ref|YP_003414753.1| hypothetical protein LM5578_2645 [Listeria monocytogenes 08-5578]
gi|284996029|ref|YP_003417797.1| hypothetical protein LM5923_2594 [Listeria monocytogenes 08-5923]
gi|284058450|gb|ADB69391.1| hypothetical protein LM5578_2645 [Listeria monocytogenes 08-5578]
gi|284061496|gb|ADB72435.1| hypothetical protein LM5923_2594 [Listeria monocytogenes 08-5923]
Length = 793
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 48/333 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
++ NR+DL + ID +A +LDDA++ +L +G K+ +H+AD T Y+ GS D +
Sbjct: 245 DIGNRRDLRDQMIITIDGADAKDLDDAVTVKQLPNGNWKLGVHIADVTHYVTEGSPLDVE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV+L PM P KL+ SL ++ + + +G + + + SII
Sbjct: 305 AQERGTSVYLVDRVIPMLPHKLSNGICSLNPQVDRFTMSCEMEIDQEGHVVNHEIFESII 364
Query: 301 KPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLET 352
K T +TY ++L E E L+ + A + + R ++GAID E
Sbjct: 365 KTTERMTYTDVNDILVEKDEALREKYAPIVPMLEAMQNLAEILRRKREKRGAIDFDFKEA 424
Query: 353 RIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
R+ V PE + V + L+ E M+ E +A + + ++ YR
Sbjct: 425 RVVVDEEGHPEAV----VMRERSAGEHLIEEFMLAANETVAEHFHWMDVPFIYRIHEDPK 480
Query: 413 ID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAAID 441
D ++ F + PE V S+ +++ M+ A D
Sbjct: 481 EDKLARFFEFITNFGLIVKGTANDIHPAALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYD 540
Query: 442 FRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
V G GL Y FTSPIRRY DL+ H
Sbjct: 541 ---TVSAGHFGLSTDFYTHFTSPIRRYPDLIVH 570
>gi|307546118|ref|YP_003898597.1| ribonuclease R [Halomonas elongata DSM 2581]
gi|307218142|emb|CBV43412.1| ribonuclease R [Halomonas elongata DSM 2581]
Length = 812
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 140/338 (41%), Gaps = 44/338 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AED+ R DL + ID + A + DDA+ A + + G K+ + +AD + Y+ PGS
Sbjct: 260 AEDDKQQRIDLRDYPLVTIDDESAKDFDDAVCAWKTKSGSWKLLVAIADVSHYVRPGSPL 319
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A+ RG SV+ P PM PE L+ SL A+ + + G+I+ Y
Sbjct: 320 DQEAISRGNSVYFPGQVVPMLPELLSNGLCSLNPDVDRLALVCEMNISKTGAISRYRFFE 379
Query: 298 SIIKPTYMLTYESATELLHLNLEEE-----------AELKILSEAAALRLQWRLQQGAID 346
++ + LTY + +L EE LK L L Q R ++GAID
Sbjct: 380 AVFRSHARLTYNKVSSILEDEGEEGDALREEYRELVPSLKNLHSLYKLLRQAREERGAID 439
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
T ET I + E I+ D A +++ E M+ A A + ++L YR
Sbjct: 440 FETTETAIVFNDERKIEKIVPRSRND----AHKIIEECMLAANVATARFLDKHDLPALYR 495
Query: 407 --------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIM-RAAA 439
G + D A +G + I +M R+ +
Sbjct: 496 IHERPSPERLDKLRLFLAELGLSLGGGDEPTPQDYRDLAEAIKGRDDADIIQTVMLRSMS 555
Query: 440 IDFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAHYQV 475
P G GL P Y FTSPIRRY DLL H +
Sbjct: 556 QAVYSPQNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAI 593
>gi|406670376|ref|ZP_11077628.1| ribonuclease R [Facklamia ignava CCUG 37419]
gi|405579683|gb|EKB53778.1| ribonuclease R [Facklamia ignava CCUG 37419]
Length = 770
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 51/351 (14%)
Query: 168 HKDISNFLQKAE--------DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIK 219
H+ N L++AE +++ R D + V ID +A +LDDA++ +L +G +
Sbjct: 235 HEFPQNVLEEAEKFGLEINPEDVNGRVDHRNQLVMTIDGADAKDLDDAIALDQLANGNYR 294
Query: 220 VYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVT 279
+Y+H+AD + Y+ GS D++A +RGTSV+L PM P++L+ SL G +T
Sbjct: 295 LYVHIADVSHYVREGSPIDREAFERGTSVYLTDRVVPMLPQRLSNGICSLHPGVDRLTLT 354
Query: 280 VSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLN--LEEEAELKILSEAAALR-- 335
++ + + GS+ +Y + ++I +Y +TYE+ + + + L EE + I+S ++R
Sbjct: 355 CAMEIDAQGSVVDYQIYPAVINSSYRMTYEAINAIYNGDKALIEEYD-PIISTLYSMRDL 413
Query: 336 ----LQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEA 391
R ++GAI+ T E I+V + P I++ ++ RL+ M++ E
Sbjct: 414 HHILEAKRHRRGAINFDTTEAIIEVDDQGHP---ISIKARERG-VGERLIESFMLVANET 469
Query: 392 IATYGSFNNLALPYRGQPQSNID--------VSAFAHLPEGPVRS--------------- 428
+A L + YR Q + D ++ F + +G V S
Sbjct: 470 VAQSYHEKELPMIYRVHEQPDADRMLKFAELLTGFGIILQGHVESIQPKQLQRVMQKLKD 529
Query: 429 ---SAIVKIMRAAAID----FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+V +M ++ + + H L Y FTSPIRRY DL+ H
Sbjct: 530 SPYEEVVSMMLLRSMQQAHYSEESLGHYGLAAKYYTHFTSPIRRYPDLIVH 580
>gi|399912037|ref|ZP_10780351.1| ribonuclease R [Halomonas sp. KM-1]
Length = 797
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 142/335 (42%), Gaps = 44/335 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
AE + +R DL + + ID ++A + DDA+ A + + G K+ + +AD + Y+ PG+
Sbjct: 260 AEQDKQHRIDLRDIPLVTIDGEDAKDFDDAVCAWKTKSGSWKLIVAIADVSHYVRPGTPL 319
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D++A++RG SV+ P PM PE L+ SL A+ + + G I+ Y
Sbjct: 320 DEEAIRRGNSVYFPGQVVPMLPELLSNGLCSLNPDVDRLAMVCEMNISKQGVISRYRFYE 379
Query: 298 SIIKPTYMLTYESATELLHLN------LEEE-----AELKILSEAAALRLQWRLQQGAID 346
++ + LTY +L + L EE LK L E + Q R ++GAID
Sbjct: 380 AVFRSHARLTYNKVAAILDEDDPEGDALREEYRALVKPLKGLHELYKVLRQAREERGAID 439
Query: 347 TATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR 406
T ET I E I+ D A +++ E M+ A A + ++L YR
Sbjct: 440 FETTETAILFNEERKIEKIVPRTRND----AHKIIEECMLAANVATARFLDKHDLPALYR 495
Query: 407 --------------------------GQPQSNIDVSAFAHLPEGPVRSSAIVKIM-RAAA 439
G + D A A G + I +M R+ +
Sbjct: 496 IHERPSPERLDKLRLFLNELGLSVGGGDEPTPQDYQALAEAIRGRPDADVIQTVMLRSMS 555
Query: 440 IDFRKPVRHGVLGL--PGYVQFTSPIRRYMDLLAH 472
P G GL P Y FTSPIRRY DLL H
Sbjct: 556 QAVYSPQNEGHFGLAYPAYAHFTSPIRRYPDLLVH 590
>gi|153827319|ref|ZP_01979986.1| exoribonuclease II [Vibrio cholerae MZO-2]
gi|149738761|gb|EDM53103.1| exoribonuclease II [Vibrio cholerae MZO-2]
Length = 678
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|254292038|ref|ZP_04962816.1| exoribonuclease II [Vibrio cholerae AM-19226]
gi|150422063|gb|EDN14032.1| exoribonuclease II [Vibrio cholerae AM-19226]
Length = 678
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|153830146|ref|ZP_01982813.1| exoribonuclease II [Vibrio cholerae 623-39]
gi|229522354|ref|ZP_04411770.1| exoribonuclease II [Vibrio cholerae TM 11079-80]
gi|419828552|ref|ZP_14352043.1| exoribonuclease II [Vibrio cholerae HC-1A2]
gi|419833475|ref|ZP_14356936.1| exoribonuclease II [Vibrio cholerae HC-61A2]
gi|419836531|ref|ZP_14359971.1| exoribonuclease II [Vibrio cholerae HC-46B1]
gi|421343605|ref|ZP_15794009.1| exoribonuclease II [Vibrio cholerae HC-43B1]
gi|421355786|ref|ZP_15806117.1| exoribonuclease II [Vibrio cholerae HE-45]
gi|422920215|ref|ZP_16953545.1| exoribonuclease II [Vibrio cholerae HC-02A1]
gi|423734952|ref|ZP_17708163.1| exoribonuclease II [Vibrio cholerae HC-41B1]
gi|423810535|ref|ZP_17714586.1| exoribonuclease II [Vibrio cholerae HC-55C2]
gi|423844429|ref|ZP_17718320.1| exoribonuclease II [Vibrio cholerae HC-59A1]
gi|423875353|ref|ZP_17721991.1| exoribonuclease II [Vibrio cholerae HC-60A1]
gi|423999833|ref|ZP_17742996.1| exoribonuclease II [Vibrio cholerae HC-02C1]
gi|424009339|ref|ZP_17752279.1| exoribonuclease II [Vibrio cholerae HC-44C1]
gi|424011665|ref|ZP_17754510.1| exoribonuclease II [Vibrio cholerae HC-55B2]
gi|424021493|ref|ZP_17761246.1| exoribonuclease II [Vibrio cholerae HC-59B1]
gi|424626902|ref|ZP_18065323.1| exoribonuclease II [Vibrio cholerae HC-50A1]
gi|424627794|ref|ZP_18066127.1| exoribonuclease II [Vibrio cholerae HC-51A1]
gi|424631594|ref|ZP_18069787.1| exoribonuclease II [Vibrio cholerae HC-52A1]
gi|424638509|ref|ZP_18076476.1| exoribonuclease II [Vibrio cholerae HC-55A1]
gi|424642313|ref|ZP_18080155.1| exoribonuclease II [Vibrio cholerae HC-56A1]
gi|424646920|ref|ZP_18084619.1| exoribonuclease II [Vibrio cholerae HC-57A1]
gi|443525639|ref|ZP_21091796.1| exoribonuclease II [Vibrio cholerae HC-78A1]
gi|148874364|gb|EDL72499.1| exoribonuclease II [Vibrio cholerae 623-39]
gi|229340339|gb|EEO05345.1| exoribonuclease II [Vibrio cholerae TM 11079-80]
gi|341631629|gb|EGS56513.1| exoribonuclease II [Vibrio cholerae HC-02A1]
gi|395942172|gb|EJH52849.1| exoribonuclease II [Vibrio cholerae HC-43B1]
gi|395950456|gb|EJH61075.1| exoribonuclease II [Vibrio cholerae HE-45]
gi|408007903|gb|EKG45939.1| exoribonuclease II [Vibrio cholerae HC-50A1]
gi|408018751|gb|EKG56182.1| exoribonuclease II [Vibrio cholerae HC-55A1]
gi|408019566|gb|EKG56963.1| exoribonuclease II [Vibrio cholerae HC-56A1]
gi|408026496|gb|EKG63502.1| exoribonuclease II [Vibrio cholerae HC-52A1]
gi|408039215|gb|EKG75507.1| exoribonuclease II [Vibrio cholerae HC-57A1]
gi|408060260|gb|EKG94962.1| exoribonuclease II [Vibrio cholerae HC-51A1]
gi|408623625|gb|EKK96579.1| exoribonuclease II [Vibrio cholerae HC-1A2]
gi|408630405|gb|EKL03002.1| exoribonuclease II [Vibrio cholerae HC-41B1]
gi|408637668|gb|EKL09696.1| exoribonuclease II [Vibrio cholerae HC-55C2]
gi|408645623|gb|EKL17262.1| exoribonuclease II [Vibrio cholerae HC-60A1]
gi|408646744|gb|EKL18326.1| exoribonuclease II [Vibrio cholerae HC-59A1]
gi|408650799|gb|EKL22074.1| exoribonuclease II [Vibrio cholerae HC-61A2]
gi|408843933|gb|EKL84072.1| exoribonuclease II [Vibrio cholerae HC-02C1]
gi|408857081|gb|EKL96769.1| exoribonuclease II [Vibrio cholerae HC-46B1]
gi|408862445|gb|EKM01961.1| exoribonuclease II [Vibrio cholerae HC-59B1]
gi|408864363|gb|EKM03806.1| exoribonuclease II [Vibrio cholerae HC-44C1]
gi|408867369|gb|EKM06730.1| exoribonuclease II [Vibrio cholerae HC-55B2]
gi|443455971|gb|ELT19681.1| exoribonuclease II [Vibrio cholerae HC-78A1]
Length = 678
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|392969383|ref|ZP_10334798.1| ribonuclease R [Fibrisoma limi BUZ 3]
gi|387841577|emb|CCH56856.1| ribonuclease R [Fibrisoma limi BUZ 3]
Length = 811
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 150/333 (45%), Gaps = 45/333 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E +L R+D+ + + ID +A + DDALS L +G ++ +H+AD T Y++PG+
Sbjct: 294 TETDLKGRRDIREVTTFTIDPVDAKDFDDALSVQILDNGHFEIGVHIADVTHYVKPGTQL 353
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A +R TSV+L PM PEKL+ SLR E + +T S V + + +
Sbjct: 354 EEEAFRRATSVYLVDRVVPMLPEKLSNNLCSLRPNE--DKLTFSAVFEMTPEAKVVKEWF 411
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQ-WRLQQGAIDTATLETRI 354
++I +YE A E+L+ + E L A +L+ R + GAI+ T+E R
Sbjct: 412 GRTVIHSNRRFSYEEAQEILNTGQGDYLEELRLLNELAYKLRDVRFKNGAINFETVEVRF 471
Query: 355 KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATY-------GSFNNLAL---- 403
K+ P +++Y + + D +L+ E M+L + +A + G N +
Sbjct: 472 KLDENGVP---LSVYPKIRQD-TNKLIEEFMLLANKRVAEFVHSLSKPGQENTMVYRIHE 527
Query: 404 -PYRGQPQSNIDVSAF---------AHL--------------PEGPVRSSAIVKIMRAAA 439
P + Q D + HL PE + V+ M A
Sbjct: 528 GPDEAKLQQFADFAGRLGYKLKLDDEHLSGSMNRFMDSIEGKPEQNMLQQLAVRTMSKAR 587
Query: 440 IDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + H L Y FTSPIRRY D++AH
Sbjct: 588 YS-TEDLGHFGLAFRRYSHFTSPIRRYPDMMAH 619
>gi|418086708|ref|ZP_12723878.1| ribonuclease R [Streptococcus pneumoniae GA47033]
gi|353758969|gb|EHD39555.1| ribonuclease R [Streptococcus pneumoniae GA47033]
Length = 784
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R +L + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLELRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|153955985|ref|YP_001396750.1| ribonuclease R [Clostridium kluyveri DSM 555]
gi|219856326|ref|YP_002473448.1| hypothetical protein CKR_2983 [Clostridium kluyveri NBRC 12016]
gi|146348843|gb|EDK35379.1| Rnr [Clostridium kluyveri DSM 555]
gi|219570050|dbj|BAH08034.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 709
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 54/331 (16%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R DL ++ ID ++A +LDDA+S +L DG + +H+AD + Y++ + DK+A+KR
Sbjct: 244 RMDLRNILTVTIDGEDAKDLDDAVSLEKLPDGSYYLGVHIADVSYYVKEKNPLDKEALKR 303
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS--IAEYSVDNSIIKP 302
GTSV+L PM P+KL+ SL + +T+S + DG+ + E+++ S+I+
Sbjct: 304 GTSVYLIDRVIPMLPKKLSNGICSLNPN--IDRLTLSCFMKIDGNGKVIEHNIVESVIRS 361
Query: 303 TYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLETRI- 354
+TY T++L + E + K++ E + + R+ +GAID E +I
Sbjct: 362 NERMTYTDVTKILKGDTETIEKYGNLVDTFKLMEELCRILNKKRMMRGAIDFDFEECKIT 421
Query: 355 --KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSN 412
++ P EP + + R++ E M++C E IA + + LP+ + N
Sbjct: 422 LNELGVPIKIEPY-------ERGISNRIIEEFMLVCNETIAEHMFWT--TLPFVFRVHEN 472
Query: 413 IDVSAFAHLPE----------------------------GPVRSSAIVKIMRAAAIDFR- 443
D H E G + + +M + R
Sbjct: 473 PDEEKLMHFNEFIHNLGYVVRWGKDVHPKTLQDIIDKVKGKKEETVVSTLMLRSMKQARY 532
Query: 444 KPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
P G GL Y FTSPIRRY DL+ H
Sbjct: 533 SPECIGHFGLAAKYYCHFTSPIRRYPDLIIH 563
>gi|167627439|ref|YP_001677939.1| exoribonuclease II [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|167597440|gb|ABZ87438.1| Exoribonuclease II [Francisella philomiragia subsp. philomiragia
ATCC 25017]
Length = 766
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 47/341 (13%)
Query: 174 FLQKAEDNLL--NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYI 231
+L D+++ NR DL + ID ++A + DDA+ A + + G K+Y+ +AD + Y+
Sbjct: 248 YLDDISDDVIVGNRVDLRNENFVTIDGEDAKDFDDAVYAYKTKSGSWKLYVAIADVSNYV 307
Query: 232 EPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA 291
E S D DA +R TSV+ P PM PEKL+ SL+ E ++ + + +G ++
Sbjct: 308 EKDSSLDLDAKRRSTSVYFPGYVIPMLPEKLSNGLCSLKPNEDRYSLVCEMNISKEGKLS 367
Query: 292 EYSVDNSIIKPTYMLTYESATELLHLN----LEEEAELK----ILSEAAALRLQWRLQQG 343
Y +++I LTY +L+ +E+ EL L E + Q R ++G
Sbjct: 368 RYKFYSAVINSKARLTYTEVAKLIEKKQNTIVEKTPELVPNIFDLYELYKVLHQARQERG 427
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLAL 403
AID T+ET+I + + E I+ + D A RL+ E M++ A A + +
Sbjct: 428 AIDFDTVETQIILNDHNHIESIVPRHRND----AHRLIEECMLVANVAAAKFTIKHKKTS 483
Query: 404 PYRGQPQSNIDVSA------------FAHLPEGPVRSSAIVKI----------------- 434
P+R + D A+ G V A+ ++
Sbjct: 484 PFRVHSEPKEDRMETLKKYLAKHGIHLAYGKNGKVTPKALAEMLDSIKDRPDYDDIQMMT 543
Query: 435 ---MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M A G L Y FTSPIRRY DL+ H
Sbjct: 544 LRSMNQAVYSINNDGHFG-LAYSEYTHFTSPIRRYPDLVVH 583
>gi|15601560|ref|NP_233191.1| exoribonuclease II [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121588067|ref|ZP_01677816.1| exoribonuclease II [Vibrio cholerae 2740-80]
gi|121730002|ref|ZP_01682417.1| exoribonuclease II [Vibrio cholerae V52]
gi|153819401|ref|ZP_01972068.1| exoribonuclease II [Vibrio cholerae NCTC 8457]
gi|153823795|ref|ZP_01976462.1| exoribonuclease II [Vibrio cholerae B33]
gi|227812371|ref|YP_002812381.1| exoribonuclease II [Vibrio cholerae M66-2]
gi|229506041|ref|ZP_04395550.1| exoribonuclease II [Vibrio cholerae BX 330286]
gi|229510103|ref|ZP_04399583.1| exoribonuclease II [Vibrio cholerae B33]
gi|229517767|ref|ZP_04407212.1| exoribonuclease II [Vibrio cholerae RC9]
gi|229528333|ref|ZP_04417724.1| exoribonuclease II [Vibrio cholerae 12129(1)]
gi|229605572|ref|YP_002876276.1| exoribonuclease II [Vibrio cholerae MJ-1236]
gi|254226976|ref|ZP_04920539.1| exoribonuclease II [Vibrio cholerae V51]
gi|254849962|ref|ZP_05239312.1| exoribonuclease II [Vibrio cholerae MO10]
gi|255746440|ref|ZP_05420387.1| exoribonuclease II [Vibrio cholera CIRS 101]
gi|262148975|ref|ZP_06028122.1| exoribonuclease II [Vibrio cholerae INDRE 91/1]
gi|298499595|ref|ZP_07009401.1| exoribonuclease II [Vibrio cholerae MAK 757]
gi|360037705|ref|YP_004939467.1| exoribonuclease II [Vibrio cholerae O1 str. 2010EL-1786]
gi|379744211|ref|YP_005335263.1| exoribonuclease II [Vibrio cholerae IEC224]
gi|417811755|ref|ZP_12458416.1| exoribonuclease II [Vibrio cholerae HC-49A2]
gi|417816942|ref|ZP_12463572.1| exoribonuclease II [Vibrio cholerae HCUF01]
gi|417819857|ref|ZP_12466472.1| exoribonuclease II [Vibrio cholerae HE39]
gi|418330363|ref|ZP_12941344.1| exoribonuclease II [Vibrio cholerae HC-06A1]
gi|418337841|ref|ZP_12946736.1| exoribonuclease II [Vibrio cholerae HC-23A1]
gi|418341897|ref|ZP_12948727.1| exoribonuclease II [Vibrio cholerae HC-28A1]
gi|418349515|ref|ZP_12954247.1| exoribonuclease II [Vibrio cholerae HC-43A1]
gi|418353535|ref|ZP_12956260.1| exoribonuclease II [Vibrio cholerae HC-61A1]
gi|419826237|ref|ZP_14349740.1| exoribonuclease II [Vibrio cholerae CP1033(6)]
gi|421317176|ref|ZP_15767746.1| exoribonuclease II [Vibrio cholerae CP1032(5)]
gi|421320179|ref|ZP_15770737.1| exoribonuclease II [Vibrio cholerae CP1038(11)]
gi|421324221|ref|ZP_15774748.1| exoribonuclease II [Vibrio cholerae CP1041(14)]
gi|421327192|ref|ZP_15777710.1| exoribonuclease II [Vibrio cholerae CP1042(15)]
gi|421332284|ref|ZP_15782763.1| exoribonuclease II [Vibrio cholerae CP1046(19)]
gi|421335922|ref|ZP_15786385.1| exoribonuclease II [Vibrio cholerae CP1048(21)]
gi|421339732|ref|ZP_15790166.1| exoribonuclease II [Vibrio cholerae HC-20A2]
gi|421346011|ref|ZP_15796395.1| exoribonuclease II [Vibrio cholerae HC-46A1]
gi|422889726|ref|ZP_16932195.1| exoribonuclease II [Vibrio cholerae HC-40A1]
gi|422898636|ref|ZP_16935925.1| exoribonuclease II [Vibrio cholerae HC-48A1]
gi|422904684|ref|ZP_16939576.1| exoribonuclease II [Vibrio cholerae HC-70A1]
gi|422915031|ref|ZP_16949480.1| exoribonuclease II [Vibrio cholerae HFU-02]
gi|422927692|ref|ZP_16960636.1| exoribonuclease II [Vibrio cholerae HC-38A1]
gi|423146763|ref|ZP_17134251.1| exoribonuclease II [Vibrio cholerae HC-19A1]
gi|423147753|ref|ZP_17135131.1| exoribonuclease II [Vibrio cholerae HC-21A1]
gi|423151540|ref|ZP_17138771.1| exoribonuclease II [Vibrio cholerae HC-22A1]
gi|423158166|ref|ZP_17145179.1| exoribonuclease II [Vibrio cholerae HC-32A1]
gi|423161968|ref|ZP_17148840.1| exoribonuclease II [Vibrio cholerae HC-33A2]
gi|423163058|ref|ZP_17149881.1| exoribonuclease II [Vibrio cholerae HC-48B2]
gi|423732923|ref|ZP_17706166.1| exoribonuclease II [Vibrio cholerae HC-17A1]
gi|423741887|ref|ZP_17710665.1| exoribonuclease II [Vibrio cholerae HC-50A2]
gi|423910318|ref|ZP_17728306.1| exoribonuclease II [Vibrio cholerae HC-62A1]
gi|423919388|ref|ZP_17729218.1| exoribonuclease II [Vibrio cholerae HC-77A1]
gi|423941343|ref|ZP_17732908.1| exoribonuclease II [Vibrio cholerae HE-40]
gi|423973095|ref|ZP_17736453.1| exoribonuclease II [Vibrio cholerae HE-46]
gi|424002002|ref|ZP_17745087.1| exoribonuclease II [Vibrio cholerae HC-17A2]
gi|424004243|ref|ZP_17747249.1| exoribonuclease II [Vibrio cholerae HC-37A1]
gi|424022174|ref|ZP_17761857.1| exoribonuclease II [Vibrio cholerae HC-62B1]
gi|424028958|ref|ZP_17768509.1| exoribonuclease II [Vibrio cholerae HC-69A1]
gi|424588444|ref|ZP_18027940.1| exoribonuclease II [Vibrio cholerae CP1030(3)]
gi|424593193|ref|ZP_18032552.1| exoribonuclease II [Vibrio cholerae CP1040(13)]
gi|424597122|ref|ZP_18036339.1| exoribonuclease II [Vibrio Cholerae CP1044(17)]
gi|424603946|ref|ZP_18042997.1| exoribonuclease II [Vibrio cholerae CP1047(20)]
gi|424604698|ref|ZP_18043685.1| exoribonuclease II [Vibrio cholerae CP1050(23)]
gi|424608525|ref|ZP_18047403.1| exoribonuclease II [Vibrio cholerae HC-39A1]
gi|424615298|ref|ZP_18054014.1| exoribonuclease II [Vibrio cholerae HC-41A1]
gi|424619147|ref|ZP_18057752.1| exoribonuclease II [Vibrio cholerae HC-42A1]
gi|424620064|ref|ZP_18058612.1| exoribonuclease II [Vibrio cholerae HC-47A1]
gi|424642689|ref|ZP_18080467.1| exoribonuclease II [Vibrio cholerae HC-56A2]
gi|424650805|ref|ZP_18088351.1| exoribonuclease II [Vibrio cholerae HC-57A2]
gi|424654586|ref|ZP_18091904.1| exoribonuclease II [Vibrio cholerae HC-81A2]
gi|429885421|ref|ZP_19367010.1| Exoribonuclease II [Vibrio cholerae PS15]
gi|440711548|ref|ZP_20892189.1| exoribonuclease II [Vibrio cholerae 4260B]
gi|443505550|ref|ZP_21072439.1| exoribonuclease II [Vibrio cholerae HC-64A1]
gi|443509458|ref|ZP_21076153.1| exoribonuclease II [Vibrio cholerae HC-65A1]
gi|443513287|ref|ZP_21079857.1| exoribonuclease II [Vibrio cholerae HC-67A1]
gi|443517122|ref|ZP_21083567.1| exoribonuclease II [Vibrio cholerae HC-68A1]
gi|443520774|ref|ZP_21087106.1| exoribonuclease II [Vibrio cholerae HC-71A1]
gi|443521685|ref|ZP_21087961.1| exoribonuclease II [Vibrio cholerae HC-72A2]
gi|443529709|ref|ZP_21095726.1| exoribonuclease II [Vibrio cholerae HC-7A1]
gi|443533399|ref|ZP_21099345.1| exoribonuclease II [Vibrio cholerae HC-80A1]
gi|443537076|ref|ZP_21102934.1| exoribonuclease II [Vibrio cholerae HC-81A1]
gi|449057860|ref|ZP_21736156.1| Exoribonuclease II [Vibrio cholerae O1 str. Inaba G4222]
gi|25453258|sp|Q9KLE1.1|RNB_VIBCH RecName: Full=Exoribonuclease 2; AltName: Full=Exoribonuclease II;
Short=RNase II; Short=Ribonuclease II
gi|254807231|sp|C3LW69.1|RNB_VIBCM RecName: Full=Exoribonuclease 2; AltName: Full=Exoribonuclease II;
Short=RNase II; Short=Ribonuclease II
gi|9658231|gb|AAF96703.1| exoribonuclease II [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121547663|gb|EAX57759.1| exoribonuclease II [Vibrio cholerae 2740-80]
gi|121628249|gb|EAX60765.1| exoribonuclease II [Vibrio cholerae V52]
gi|125620489|gb|EAZ48860.1| exoribonuclease II [Vibrio cholerae V51]
gi|126510047|gb|EAZ72641.1| exoribonuclease II [Vibrio cholerae NCTC 8457]
gi|126518683|gb|EAZ75906.1| exoribonuclease II [Vibrio cholerae B33]
gi|227011513|gb|ACP07724.1| exoribonuclease II [Vibrio cholerae M66-2]
gi|229334695|gb|EEO00181.1| exoribonuclease II [Vibrio cholerae 12129(1)]
gi|229345803|gb|EEO10776.1| exoribonuclease II [Vibrio cholerae RC9]
gi|229352548|gb|EEO17488.1| exoribonuclease II [Vibrio cholerae B33]
gi|229356392|gb|EEO21310.1| exoribonuclease II [Vibrio cholerae BX 330286]
gi|229372058|gb|ACQ62480.1| exoribonuclease II [Vibrio cholerae MJ-1236]
gi|254845667|gb|EET24081.1| exoribonuclease II [Vibrio cholerae MO10]
gi|255736194|gb|EET91592.1| exoribonuclease II [Vibrio cholera CIRS 101]
gi|262031253|gb|EEY49870.1| exoribonuclease II [Vibrio cholerae INDRE 91/1]
gi|297541576|gb|EFH77627.1| exoribonuclease II [Vibrio cholerae MAK 757]
gi|340040092|gb|EGR01065.1| exoribonuclease II [Vibrio cholerae HCUF01]
gi|340040715|gb|EGR01687.1| exoribonuclease II [Vibrio cholerae HE39]
gi|340044575|gb|EGR05523.1| exoribonuclease II [Vibrio cholerae HC-49A2]
gi|341627744|gb|EGS53042.1| exoribonuclease II [Vibrio cholerae HC-70A1]
gi|341629304|gb|EGS54469.1| exoribonuclease II [Vibrio cholerae HC-48A1]
gi|341629534|gb|EGS54686.1| exoribonuclease II [Vibrio cholerae HC-40A1]
gi|341632555|gb|EGS57420.1| exoribonuclease II [Vibrio cholerae HFU-02]
gi|341643217|gb|EGS67514.1| exoribonuclease II [Vibrio cholerae HC-38A1]
gi|356417846|gb|EHH71457.1| exoribonuclease II [Vibrio cholerae HC-19A1]
gi|356424074|gb|EHH77494.1| exoribonuclease II [Vibrio cholerae HC-06A1]
gi|356424756|gb|EHH78153.1| exoribonuclease II [Vibrio cholerae HC-21A1]
gi|356431225|gb|EHH84430.1| exoribonuclease II [Vibrio cholerae HC-23A1]
gi|356435651|gb|EHH88801.1| exoribonuclease II [Vibrio cholerae HC-32A1]
gi|356436735|gb|EHH89845.1| exoribonuclease II [Vibrio cholerae HC-22A1]
gi|356439787|gb|EHH92750.1| exoribonuclease II [Vibrio cholerae HC-28A1]
gi|356440798|gb|EHH93730.1| exoribonuclease II [Vibrio cholerae HC-33A2]
gi|356446377|gb|EHH99177.1| exoribonuclease II [Vibrio cholerae HC-43A1]
gi|356454600|gb|EHI07247.1| exoribonuclease II [Vibrio cholerae HC-61A1]
gi|356457237|gb|EHI09804.1| exoribonuclease II [Vibrio cholerae HC-48B2]
gi|356648859|gb|AET28913.1| exoribonuclease II [Vibrio cholerae O1 str. 2010EL-1786]
gi|378796805|gb|AFC60275.1| exoribonuclease II [Vibrio cholerae IEC224]
gi|395919634|gb|EJH30457.1| exoribonuclease II [Vibrio cholerae CP1032(5)]
gi|395922235|gb|EJH33054.1| exoribonuclease II [Vibrio cholerae CP1041(14)]
gi|395925067|gb|EJH35869.1| exoribonuclease II [Vibrio cholerae CP1038(11)]
gi|395931082|gb|EJH41828.1| exoribonuclease II [Vibrio cholerae CP1046(19)]
gi|395934117|gb|EJH44856.1| exoribonuclease II [Vibrio cholerae CP1042(15)]
gi|395935604|gb|EJH46339.1| exoribonuclease II [Vibrio cholerae CP1048(21)]
gi|395941291|gb|EJH51969.1| exoribonuclease II [Vibrio cholerae HC-20A2]
gi|395947538|gb|EJH58193.1| exoribonuclease II [Vibrio cholerae HC-46A1]
gi|395955101|gb|EJH65705.1| exoribonuclease II [Vibrio cholerae HC-42A1]
gi|395966597|gb|EJH76714.1| exoribonuclease II [Vibrio cholerae HC-57A2]
gi|395967298|gb|EJH77394.1| exoribonuclease II [Vibrio cholerae HC-56A2]
gi|395968493|gb|EJH78445.1| exoribonuclease II [Vibrio cholerae CP1030(3)]
gi|395969360|gb|EJH79242.1| exoribonuclease II [Vibrio cholerae CP1047(20)]
gi|395978784|gb|EJH88153.1| exoribonuclease II [Vibrio cholerae HC-47A1]
gi|408006420|gb|EKG44568.1| exoribonuclease II [Vibrio cholerae HC-41A1]
gi|408012420|gb|EKG50199.1| exoribonuclease II [Vibrio cholerae HC-39A1]
gi|408039737|gb|EKG76006.1| exoribonuclease II [Vibrio cholerae CP1040(13)]
gi|408046855|gb|EKG82519.1| exoribonuclease II [Vibrio Cholerae CP1044(17)]
gi|408048546|gb|EKG83952.1| exoribonuclease II [Vibrio cholerae CP1050(23)]
gi|408059273|gb|EKG94041.1| exoribonuclease II [Vibrio cholerae HC-81A2]
gi|408609027|gb|EKK82410.1| exoribonuclease II [Vibrio cholerae CP1033(6)]
gi|408616442|gb|EKK89596.1| exoribonuclease II [Vibrio cholerae HC-17A1]
gi|408646651|gb|EKL18234.1| exoribonuclease II [Vibrio cholerae HC-50A2]
gi|408649427|gb|EKL20740.1| exoribonuclease II [Vibrio cholerae HC-62A1]
gi|408661261|gb|EKL32246.1| exoribonuclease II [Vibrio cholerae HC-77A1]
gi|408662756|gb|EKL33662.1| exoribonuclease II [Vibrio cholerae HE-40]
gi|408666697|gb|EKL37475.1| exoribonuclease II [Vibrio cholerae HE-46]
gi|408847858|gb|EKL87916.1| exoribonuclease II [Vibrio cholerae HC-17A2]
gi|408850987|gb|EKL90927.1| exoribonuclease II [Vibrio cholerae HC-37A1]
gi|408872342|gb|EKM11562.1| exoribonuclease II [Vibrio cholerae HC-69A1]
gi|408876939|gb|EKM16043.1| exoribonuclease II [Vibrio cholerae HC-62B1]
gi|429227774|gb|EKY33756.1| Exoribonuclease II [Vibrio cholerae PS15]
gi|439973035|gb|ELP49278.1| exoribonuclease II [Vibrio cholerae 4260B]
gi|443429994|gb|ELS72615.1| exoribonuclease II [Vibrio cholerae HC-64A1]
gi|443433861|gb|ELS80073.1| exoribonuclease II [Vibrio cholerae HC-65A1]
gi|443437458|gb|ELS87241.1| exoribonuclease II [Vibrio cholerae HC-67A1]
gi|443441281|gb|ELS94649.1| exoribonuclease II [Vibrio cholerae HC-68A1]
gi|443445533|gb|ELT02253.1| exoribonuclease II [Vibrio cholerae HC-71A1]
gi|443452147|gb|ELT12375.1| exoribonuclease II [Vibrio cholerae HC-72A2]
gi|443459279|gb|ELT26673.1| exoribonuclease II [Vibrio cholerae HC-7A1]
gi|443463364|gb|ELT34369.1| exoribonuclease II [Vibrio cholerae HC-80A1]
gi|443467085|gb|ELT41741.1| exoribonuclease II [Vibrio cholerae HC-81A1]
gi|448262885|gb|EMB00132.1| Exoribonuclease II [Vibrio cholerae O1 str. Inaba G4222]
Length = 678
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|373458756|ref|ZP_09550523.1| ribonuclease R [Caldithrix abyssi DSM 13497]
gi|371720420|gb|EHO42191.1| ribonuclease R [Caldithrix abyssi DSM 13497]
Length = 740
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 47/332 (14%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L R DL + + ID +A + DDA+S L +G ++ +H+AD + Y++P + DK+
Sbjct: 245 DLKGRLDLRNEVCFTIDPHDAKDFDDAVSLKLLDNGNFELGVHIADVSHYVKPDTALDKE 304
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A +RGTSV++ PM PE+L+ + SLR E + + ++ G + Y + S+I
Sbjct: 305 AYRRGTSVYMVDRVVPMLPERLSNQLCSLRPNEDRLTFSCIMEINRKGEVVNYKIAPSVI 364
Query: 301 KPTYMLTYESATELLHLNLEEEAELKILSEAAALR---LQWRLQQGAIDTATLETRIKVA 357
+YE ++L ++ +IL + ALR + R +G ID T E + +
Sbjct: 365 NSNRRFSYEEVQDILD-GKTDDPYAEILKQMDALREILMNKRFTEGGIDFETPEVKFVLD 423
Query: 358 NPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGS-------------------- 397
P I V + + RLV E M++ + +A +
Sbjct: 424 EKGKPVEI----VPQKRLNSHRLVEEFMLIANKTVAQHIKKISPNKQAPLPFIYRVHEKP 479
Query: 398 --------FNNLA---LPYR------GQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAI 440
FN L+ +P++ + N+ S E + A+ +M+A
Sbjct: 480 DEEKMNRFFNFLSAMRVPFKPVKRVTSRYLQNLLASIKGTKEEVIIEEVALRSMMKAVYS 539
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ + + H LG Y FTSPIRRY DL+ H
Sbjct: 540 E--QNIGHFGLGFKDYTHFTSPIRRYPDLVVH 569
>gi|422920975|ref|ZP_16954233.1| exoribonuclease II [Vibrio cholerae BJG-01]
gi|341649770|gb|EGS73720.1| exoribonuclease II [Vibrio cholerae BJG-01]
Length = 678
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 163/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I+++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIADW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQSRANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYFDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|424589188|ref|ZP_18028653.1| exoribonuclease II [Vibrio cholerae CP1037(10)]
gi|408038184|gb|EKG74538.1| exoribonuclease II [Vibrio cholerae CP1037(10)]
Length = 678
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>gi|421879125|ref|ZP_16310598.1| Ribonuclease R [Leuconostoc citreum LBAE C11]
gi|390446924|emb|CCF26718.1| Ribonuclease R [Leuconostoc citreum LBAE C11]
Length = 774
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 47/345 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D+T + ID + ++DDA+ A +L +G + +H+AD + Y+ GSL D +A
Sbjct: 253 GREDITDQTLVTIDGADTKDIDDAVVAWKLDNGNYHLGVHIADVSHYVTEGSLIDAEAYH 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P ++ SL A++ + ++ G I + + S+IK
Sbjct: 313 RGTSVYLTDRVIPMLPRNISNGIASLNPNVARLAMSAEMEINPAGKIVSHRLHTSVIKSH 372
Query: 304 YMLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ ++L ++ EE A+L K++ E + R ++GAI+ E +I V
Sbjct: 373 ARMTYDAVNKILEGDVFVQEEYAQLTPMFKVMGELHEILYNMRKKRGAIEFDAPEAQIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR-------- 406
N +++ + ++ A R++ M+ E +A + F+ L +P YR
Sbjct: 433 DN---DGKAVDIKLRERG-TAERMIESFMLAANETVAEH--FDKLDVPFLYRIHETPDEE 486
Query: 407 ------------GQP----QSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDFR 443
G P S + + L P + S+ +++ M+ A
Sbjct: 487 RAKSFFEFSKALGHPVYGDPSKVTPTMLQQLMADVAGDPAEQMISTMMLRAMKQAKYS-P 545
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
PV H LG Y FTSPIRRY DL H + A + V +Q
Sbjct: 546 DPVGHFGLGASYYTHFTSPIRRYPDLTVHRLIKWYAKHGLGVASQ 590
>gi|170016765|ref|YP_001727684.1| exoribonuclease R [Leuconostoc citreum KM20]
gi|414596523|ref|ZP_11446097.1| Ribonuclease R [Leuconostoc citreum LBAE E16]
gi|169803622|gb|ACA82240.1| Exoribonuclease R [Leuconostoc citreum KM20]
gi|390482544|emb|CCF28158.1| Ribonuclease R [Leuconostoc citreum LBAE E16]
Length = 774
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 47/345 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D+T + ID + ++DDA+ A +L +G + +H+AD + Y+ GSL D +A
Sbjct: 253 GREDITDQTLVTIDGADTKDIDDAVVAWKLDNGNYHLGVHIADVSHYVTEGSLIDAEAYH 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P ++ SL A++ + ++ G I + + S+IK
Sbjct: 313 RGTSVYLTDRVIPMLPRNISNGIASLNPNVARLAMSAEMEINPAGKIVSHRLHTSVIKSH 372
Query: 304 YMLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ ++L ++ EE A+L K++ E + R ++GAI+ E +I V
Sbjct: 373 ARMTYDAVNKILEGDVFVQEEYAQLTPMFKVMGELHEILYNMRKKRGAIEFDAPEAQIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR-------- 406
N +++ + ++ A R++ M+ E +A + F+ L +P YR
Sbjct: 433 DN---DGKAVDIKLRERG-TAERMIESFMLAANETVAEH--FDKLDVPFLYRIHETPDEE 486
Query: 407 ------------GQP----QSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDFR 443
G P S + + L P + S+ +++ M+ A
Sbjct: 487 RAKSFFEFSKALGHPVYGDPSKVTPTMLQQLMSDVAGDPAEQMISTMMLRAMKQAKYS-P 545
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
PV H LG Y FTSPIRRY DL H + A + V +Q
Sbjct: 546 DPVGHFGLGASYYTHFTSPIRRYPDLTVHRLIKWYAKHGLGVASQ 590
>gi|404475053|ref|YP_006706484.1| exoribonuclease R [Brachyspira pilosicoli B2904]
gi|404436542|gb|AFR69736.1| exoribonuclease R [Brachyspira pilosicoli B2904]
Length = 576
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/318 (27%), Positives = 145/318 (45%), Gaps = 34/318 (10%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R DL LK ID + + +LDDA S R+ D KVY+H++D + +IE S D +A K
Sbjct: 131 DRVDLRSLKTVTIDSEHSKDLDDAFSIERVDDN-YKVYVHISDVSNFIEHNSHLDIEAKK 189
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RG S +L Y MFPE L+ E +SL + +T+ V+ DG+I E V SII
Sbjct: 190 RGNSTYLIDKVYNMFPEILSNEIISLNEKVDRFTLTLICVIDKDGNILESDVVKSIINSD 249
Query: 304 YMLTYESATELLHLNLEEEAEL-KILSEAAALR-LQWRLQQGAIDTATLETRIKVANPED 361
L+Y A ++++ +E L ++++ A ++ + + + +D + I + +
Sbjct: 250 KKLSYNYAEDIINKKANDEDWLMELINNALEVKNILHKKRSKGVDFENDDINIVLDDNGV 309
Query: 362 PEPIINLYVEDQADPAMRLVSEMMILCGEAIA-TYGSFNNLALPYRGQP----------- 409
P I Y E++ + +M ++ +M+L IA + + Y G P
Sbjct: 310 P---IEFYAEEKKE-SMLIIESLMLLANSEIAKKLKDYEGVIYRYHGAPDNYRFNNFKIL 365
Query: 410 ------------QSNIDVSAFAHLPEGPVRSSAIVKI-MRAAAIDFRKPVR--HGVLGLP 454
+ N D+ F +G + + MR+ + H LG
Sbjct: 366 AHNKGYELKKLDEDNYDLIDFLEKIKGKSEEKLLTGVLMRSMTPSSYSVINKSHFGLGFD 425
Query: 455 GYVQFTSPIRRYMDLLAH 472
Y FTSPIRRY+DL H
Sbjct: 426 YYTYFTSPIRRYVDLTIH 443
>gi|419455374|ref|ZP_13995334.1| ribonuclease R [Streptococcus pneumoniae EU-NP04]
gi|421285228|ref|ZP_15736005.1| ribonuclease R [Streptococcus pneumoniae GA60190]
gi|379629831|gb|EHZ94425.1| ribonuclease R [Streptococcus pneumoniae EU-NP04]
gi|395887207|gb|EJG98222.1| ribonuclease R [Streptococcus pneumoniae GA60190]
Length = 784
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 49/336 (14%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++ ++ R +L + ID +A +LDDA+ L++G +++ +H+AD + Y+ GS
Sbjct: 243 SQKDMEGRLELRDEITFTIDGADAKDLDDAVHIKALKNGNLELGVHIADVSYYVTEGSAL 302
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSIAEYSV 295
DK+A+ R TSV++ PM PE+L+ SL + +T S ++ D G + Y++
Sbjct: 303 DKEALNRATSVYVTDRVVPMLPERLSNGICSLNPQ--VDRLTQSAIMEIDKHGRVVNYTI 360
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTA 348
++IK ++ +TY ++L + E+ + ++++++ R+++GA++
Sbjct: 361 TQTVIKTSFRMTYSDVNDILAGDEEKRKKYHKIVPSIELMAKLHETLENMRVKRGALNFD 420
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY--- 405
T E +I V P I V Q A R++ M++ E +A + F+ L LP+
Sbjct: 421 TNEAKILVDKQGKPVDI----VLRQRGIAERMIESFMLMANETVAEH--FSKLDLPFIYR 474
Query: 406 -RGQP-----QSNID-VSAFAHLPEGP---VRSSAIVKIMRAAAIDFRKPV--------- 446
+P Q ID S+F G + A+ IMRA + V
Sbjct: 475 IHEEPKAEKVQKFIDYASSFGLRIYGTASEISQEALQDIMRAVEGEPYADVLSMMLLRSM 534
Query: 447 --------RHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 535 QQARYSEHNHGHYGLAADYYTHFTSPIRRYPDLLVH 570
>gi|228478321|ref|ZP_04062929.1| ribonuclease R [Streptococcus salivarius SK126]
gi|228250000|gb|EEK09270.1| ribonuclease R [Streptococcus salivarius SK126]
Length = 817
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 153/334 (45%), Gaps = 45/334 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++L+ R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLVGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A+ RGTSV++ PM PE+L+ SL + +T S ++ G + + +
Sbjct: 305 NREAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEITPKGKVVNHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+I T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVINTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TFEARILVNEKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGVQIKGTANKMDQLDLQEFMAKVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
HG GL Y FTSPIRRY DLL H
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVH 572
>gi|421876404|ref|ZP_16307961.1| Ribonuclease R [Leuconostoc citreum LBAE C10]
gi|372557697|emb|CCF24081.1| Ribonuclease R [Leuconostoc citreum LBAE C10]
Length = 774
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/345 (26%), Positives = 157/345 (45%), Gaps = 47/345 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+D+T + ID + ++DDA+ A +L +G + +H+AD + Y+ GSL D +A
Sbjct: 253 GREDITDQTLVTIDGADTKDIDDAVVAWKLDNGNYHLGVHIADVSHYVTEGSLIDAEAYH 312
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGTSV+L PM P ++ SL A++ + ++ G I + + S+IK
Sbjct: 313 RGTSVYLTDRVIPMLPRNISNGIASLNPNVARLAMSAEMEINPAGKIVSHRLHTSVIKSH 372
Query: 304 YMLTYESATELLHLNL---EEEAEL----KILSEAAALRLQWRLQQGAIDTATLETRIKV 356
+TY++ ++L ++ EE A+L K++ E + R ++GAI+ E +I V
Sbjct: 373 ARMTYDAVNKILEGDVFVQEEYAQLTPMFKVMGELHEILYNMRKKRGAIEFDAPEAQIIV 432
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP--YR-------- 406
N +++ + ++ A R++ M+ E +A + F+ L +P YR
Sbjct: 433 DN---DGKAVDIKLRERG-TAERMIESFMLAANETVAEH--FDKLDVPFLYRIHETPDEE 486
Query: 407 ------------GQP----QSNIDVSAFAHL-------PEGPVRSSAIVKIMRAAAIDFR 443
G P S + + L P + S+ +++ M+ A
Sbjct: 487 RAKSFFEFSKALGHPVYGDPSKVTPTMLQQLMSDVAGDPAEQMISTMMLRAMKQAKYS-P 545
Query: 444 KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQ 488
PV H LG Y FTSPIRRY DL H + A + V +Q
Sbjct: 546 DPVGHFGLGASYYTHFTSPIRRYPDLTVHRLIKWYAKHGLGVASQ 590
>gi|163789779|ref|ZP_02184216.1| ribonuclease R [Carnobacterium sp. AT7]
gi|159875001|gb|EDP69068.1| ribonuclease R [Carnobacterium sp. AT7]
Length = 783
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 153/336 (45%), Gaps = 50/336 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E + R+DL + ID +A +LDDA+ L +G ++ +H+AD + Y+ S D
Sbjct: 255 ETDFEGRRDLRDEVLVTIDGADAKDLDDAVGLKLLDNGNYQLGVHIADVSYYVTEDSPLD 314
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
KDA +RGTSV+L PM P++L+ SL + +T+S V+ DG I + +
Sbjct: 315 KDAFERGTSVYLTDRVIPMIPQRLSNGICSLNPH--VDRLTMSCVMEMSPDGEIVGHDIF 372
Query: 297 NSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL---------QWRLQQGAIDT 347
S+I+ T +TY E++ + +E K S L + R +GAID
Sbjct: 373 QSVIRTTERMTYTEVNEIV-TDKNQETREKYSSLVGMFELMETLHHTLEKKRKSRGAIDF 431
Query: 348 ATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRG 407
T E +I V + P +++ + ++ R++ M+ E ++ + S + L YR
Sbjct: 432 DTKEAKIIVDSVGKP---LDIELRERG-VGERMIESFMLSANETVSEHFSRMEVPLIYRI 487
Query: 408 QPQSNID--------VSAFA-----------------------HLPEGPVRSSAIVKIMR 436
Q + D V+AF PE V S+ +++ M+
Sbjct: 488 HEQPDSDRMQKFMEFVTAFGITVKGTSKDVSPKTLQTVINSVKGKPEEQVVSTMMLRSMK 547
Query: 437 AAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
A D +P+ H LG Y FTSPIRRY DL+ H
Sbjct: 548 QAKYDV-EPLGHFGLGAEFYSHFTSPIRRYPDLILH 582
>gi|421452013|ref|ZP_15901374.1| Exoribonuclease II [Streptococcus salivarius K12]
gi|400182444|gb|EJO16706.1| Exoribonuclease II [Streptococcus salivarius K12]
Length = 817
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 45/337 (13%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
++++LL R DL + ID +A +LDDA+ RL +G ++ +H+AD + Y+ GS
Sbjct: 245 SQEDLLGRVDLRQEVTFTIDGADAKDLDDAVHIKRLPNGNFELGVHIADVSYYVTEGSAL 304
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSV 295
+++A+ RGTSV++ PM PE+L+ SL + +T S ++ G + + +
Sbjct: 305 NREAVARGTSVYVTDRVVPMLPERLSNGICSLNPN--VDRLTQSAIMEITPKGKVVNHKI 362
Query: 296 DNSIIKPTYMLTYESATELLHLNLEEEAELK-------ILSEAAALRLQWRLQQGAIDTA 348
S+I T+ +TY E+L N E+ + K ++E + R ++GA++
Sbjct: 363 CQSVINTTFRMTYSDVNEMLAGNPEKIEQFKPIMDSVSAMAELHKILEDMRERRGALNFD 422
Query: 349 TLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-- 406
T E RI V P +++ V ++ A R++ M+ E +A + + L YR
Sbjct: 423 TSEARILVNEKGMP---VDIVVRERG-TAERMIESFMLAANECVAEHFAKAKLPFIYRIH 478
Query: 407 GQPQS-------------------------NIDVSAFAHLPEG-PVRSSAIVKIMRAAAI 440
+P++ +D+ F +G P + ++R+
Sbjct: 479 EEPKAEKLQRFMDYASIFGVQIKGTANKMDQLDLQEFMARVQGKPGAEVMNMMLLRSMQQ 538
Query: 441 DFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAHYQV 475
HG GL Y FTSPIRRY DLL H +
Sbjct: 539 ARYSEHNHGHYGLAAQYYTHFTSPIRRYPDLLVHRMI 575
>gi|257877527|ref|ZP_05657180.1| 3'-5' exoribonuclease [Enterococcus casseliflavus EC20]
gi|257811693|gb|EEV40513.1| 3'-5' exoribonuclease [Enterococcus casseliflavus EC20]
Length = 786
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 44/327 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL ++ ID +A +LDDA++ L DG + +H+AD + Y+ S DK+A +R
Sbjct: 259 RRDLRDQQIVTIDGADAKDLDDAVTVKALPDGSFYLGVHIADVSYYVTENSALDKEAFER 318
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
GTSV+L PM P++L+ SL A++ + ++ +G + +Y++ SII+ +
Sbjct: 319 GTSVYLTDRVIPMIPQRLSNGICSLNPNVPRLAMSCEMWINQEGIVTDYNIFQSIIQTSA 378
Query: 305 MLTYESATELLHLNLEEEAE-----LKILSEAAALRL---QWRLQQGAIDTATLETRIKV 356
+TY++ +++ N E ++ + + + AAL R+++GA+ E ++ V
Sbjct: 379 RMTYQAVNQIVEDNDPETSKEYGELVPMFHDMAALHHVLETMRIKRGAVSFEDREAKVLV 438
Query: 357 ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--GQP----- 409
P+ I V + RL+ M+ E +A + + +L YR +P
Sbjct: 439 DGEGHPQEI----VLRERGVGERLIESFMLAANETVARHFNRKHLPFIYRIHEEPKEEKM 494
Query: 410 ---------------QSNIDVSA---------FAHLPEGPVRSSAIVKIMRAAAIDFRKP 445
Q+N +S A PE V ++ +++ M+ A +
Sbjct: 495 RRFFDFASALGIVVKQTNGSISPKQLQKVVEDVADKPEAMVVNTMLLRSMQQAKYS-EEN 553
Query: 446 VRHGVLGLPGYVQFTSPIRRYMDLLAH 472
V H L Y FTSPIRRY DL+ H
Sbjct: 554 VGHYGLAAEDYTHFTSPIRRYPDLIVH 580
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,626,370,726
Number of Sequences: 23463169
Number of extensions: 308543592
Number of successful extensions: 761555
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6070
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 745161
Number of HSP's gapped (non-prelim): 12083
length of query: 514
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 367
effective length of database: 8,910,109,524
effective search space: 3270010195308
effective search space used: 3270010195308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)