BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010247
(514 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NQJ6|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 803
Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/293 (82%), Positives = 268/293 (91%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
+ R DLTHLKVYAIDVDEADELDDALSA RLQDGRIK++IHVADP +Y+ PGS D++A
Sbjct: 397 VRRIDLTHLKVYAIDVDEADELDDALSATRLQDGRIKIWIHVADPARYVTPGSKVDREAR 456
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKP 302
+RGTSVFLPTATYPMFPEKLAMEGMSLRQGE CNAV+VSVVL SDG I EYSVDNSII+P
Sbjct: 457 RRGTSVFLPTATYPMFPEKLAMEGMSLRQGENCNAVSVSVVLRSDGCITEYSVDNSIIRP 516
Query: 303 TYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP 362
TYMLTYESA+ELLHLNLEEEAELK+LSEAA +R QWR +QGA+DT TLETRIKV NPEDP
Sbjct: 517 TYMLTYESASELLHLNLEEEAELKLLSEAAFIRSQWRREQGAVDTTTLETRIKVVNPEDP 576
Query: 363 EPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422
EP+INLYVE+QAD AMRLV EMMILCGE +AT+GS +N+ LPYRGQPQSNIDVSAFAHLP
Sbjct: 577 EPLINLYVENQADLAMRLVFEMMILCGEVVATFGSQHNIPLPYRGQPQSNIDVSAFAHLP 636
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
EGPVRSS+IVK+MRAA ++FR PVRHGVLG+PGYVQFTSPIRRYMDL AHYQ+
Sbjct: 637 EGPVRSSSIVKVMRAAEMNFRCPVRHGVLGIPGYVQFTSPIRRYMDLTAHYQI 689
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/194 (54%), Positives = 135/194 (69%), Gaps = 15/194 (7%)
Query: 1 MMAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRNKSNLGFRLPACRSERQ 57
MM+VRA+N CS+ R SA PP+ F+ + R+ LR S L P R++R+
Sbjct: 1 MMSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLR-EFSKLRLNFPLIRADRR 57
Query: 58 FLNRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQ 108
FL S + SCS +HSLV+SV +EL +I +R +RV A VKV S GE+LEDKL NQ
Sbjct: 58 FLGNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQ 117
Query: 109 VLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDH 168
L+ GLLLEFKKD+DRVLLAV R DGKKNWMV+DQNG SCSIKPQQ+T++VP V FDH
Sbjct: 118 ELEAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQNGVSCSIKPQQITYIVPNVYNFDH 177
Query: 169 KDISNFLQKAEDNL 182
+++FLQ+A+DNL
Sbjct: 178 TGLTDFLQRAQDNL 191
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 474 QVGLQAAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEVV 513
+VG QA AWVS G Q+GDE+EV+VEEAHPRDD+I KEV+
Sbjct: 764 EVGFQATAWVSEGKQVGDEIEVRVEEAHPRDDLILFKEVI 803
>sp|P73177|RN2H_SYNY3 Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1
Length = 666
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 173/293 (59%), Gaps = 7/293 (2%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R DLT LK Y ID + E+DD LS L DG +++IHVADPT+ + P D +A K
Sbjct: 262 ERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWIHVADPTRLLSPNDELDLEARK 321
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
R TS++LPT MFP +LA MSL QG+ C A++ V L G++ ++++ S +KPT
Sbjct: 322 RSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGVTLDEVGAVRDFTIAPSWVKPT 381
Query: 304 YMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPE 363
Y LTYE E+L L ++ E EL +L+EAA R QWR QGAI E IKV E+
Sbjct: 382 YRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQGAITIKMPEAIIKVNADEE-- 439
Query: 364 PIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDV-SAFAHLP 422
+ +Y+++ + + +LV+EMMIL GE + + + +P+RGQPQ + LP
Sbjct: 440 --VQIYLQETSV-SRQLVAEMMILAGEVAGRFCQEHGIPVPFRGQPQPELPSDEELLSLP 496
Query: 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV 475
GPVR A+ + M + + P RH LGL Y Q TSPIRRY DL+ H+Q+
Sbjct: 497 PGPVRECAVRRCMPRSEVGI-TPSRHASLGLDLYSQATSPIRRYTDLITHFQM 548
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 110 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHK 169
++KG L+EF+ +R LAV RPDGKK+W+V DQ G S +KPQ+V + +PG +
Sbjct: 1 MEKGQLIEFRHQGER-RLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPG-GPYTVD 58
Query: 170 DISNFLQKAEDNLLNRKDLTHLKV-YAIDVDEADELDDALSAMRL 213
D+ +FL + + L D + L+V + + ++E + + A A+ L
Sbjct: 59 DLPSFLGEVDQYL----DPSSLEVAWELLIEEGESITPADLALLL 99
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 122 bits (307), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 156/335 (46%), Gaps = 48/335 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E +L +R+DL + ID +A +LDDA++ +L DG K+ +H+AD + Y+ S D
Sbjct: 242 EKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPID 301
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNS 298
K+A++RGTSV+L PM P +L+ SL ++ + ++S G + E+ + S
Sbjct: 302 KEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQS 361
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATL 350
+IK T +TY ++L + EE + K + A + R+ +GA+D
Sbjct: 362 VIKTTERMTYSDVNKILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMDRGAVDFDFK 421
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQ 410
E ++ V D E + V + A +L+ E M++ E +A + + N+ YR +
Sbjct: 422 EAKVLV----DDEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEE 477
Query: 411 SNID--------VSAFAHL-----------------------PEGPVRSSAIVKIMRAAA 439
N + V+ F ++ PE V S+ +++ M+ A
Sbjct: 478 PNAEKLQKFLEFVTTFGYVVKGTAGNIHPRALQSILDAVRDRPEETVISTVMLRSMKQAK 537
Query: 440 IDFRKPVRHGVLGLPG--YVQFTSPIRRYMDLLAH 472
D P G GL Y FTSPIRRY DL+ H
Sbjct: 538 YD---PQSLGHFGLSTEFYTHFTSPIRRYPDLIVH 569
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 122 bits (306), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 152/337 (45%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ L IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P + VE++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVAL----VENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 R-GQPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + ++ F A P P+ S V+ M
Sbjct: 423 RIHEPPNEENLLLFRETAKAMGFTITQTPTQEPDYQYLLQETSAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 38/337 (11%)
Query: 169 KDISNFLQK-AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S FLQK L +RKDL L + ID A + DDA+S +G + +H+AD
Sbjct: 187 QEASQFLQKHVTQALHSRKDLRDLLCFTIDSSSAKDFDDAVSLTYDHEGNYILGVHIADV 246
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S D++A KR S++ P PM P L+ SL+ AV+V + +
Sbjct: 247 SHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFSKE 306
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRL--QWRLQQGAI 345
G +++Y + S+I+ Y +TY+ E++ IL A R+ R Q+G
Sbjct: 307 GFLSDYRILRSVIRSKYRMTYDEVDEIIEKKQTHPISKTILKMAELSRIFSDIREQRGCT 366
Query: 346 DTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPY 405
+ + N ++P +I E++ A +L+ E M+ E IA + S + +P+
Sbjct: 367 RLVLPSFTMSLDNLQEPVALI----ENKQTAAHKLIEEFMLKANEVIAYHISHQGITMPF 422
Query: 406 RG-QPQSNIDVSAF-----------------------------AHLPEGPVRSSAIVKIM 435
R +P + + F A P P+ S V+ M
Sbjct: 423 RTHEPPNEESLLVFQETAKAMGFTITQTPAQEPDYQYLLQETTAGHPLEPILHSQFVRSM 482
Query: 436 RAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 483 KTASYSTENKGHYG-LCLDYYTHFTSPIRRYVDLIVH 518
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 169 KDISNFLQKAEDNLLN-RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADP 227
++ S F QK +L+ RKDL L + ID A + DDA+S + + +H+AD
Sbjct: 190 EEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADV 249
Query: 228 TKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
+ Y+ P S DK+A KR S + P PM P L+ SL+ AV+V +
Sbjct: 250 SHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVFMTFTKS 309
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQW---RLQQGA 344
G +++Y + S+I+ Y +TY+ ++ KIL+E A L ++ R ++G
Sbjct: 310 GHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLS-KILNEMATLSKKFSDIREERGC 368
Query: 345 IDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALP 404
I + + N ++P +I E+ + +L+ E M+ E +A + S ++LP
Sbjct: 369 IRFVLPSVTMSLDNLQEPVALI----ENHQTFSHKLIEEFMLKANEVVAYHISHQGVSLP 424
Query: 405 YRG-QPQSNIDVSAFAHL-----------------------------PEGPVRSSAIVKI 434
+R +P ++ ++ AF L P V S V+
Sbjct: 425 FRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRS 484
Query: 435 MRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
M+ A+ +G L L Y FTSPIRRY+DL+ H
Sbjct: 485 MKTASYSTENKGHYG-LKLDYYTHFTSPIRRYIDLIVH 521
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 47/334 (14%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
E+ ++ R D + + ID +A +LDDA+ A RL++G ++ +H+AD + Y+ S D
Sbjct: 253 ENEIVGRVDYRNEITFTIDGADAKDLDDAVHAKRLENGNYELGVHIADVSHYVTENSPLD 312
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLH--SDGSIAEYSVD 296
K+A +RGTSV++ PM PE+L+ SL N +T S V+ +G + Y +
Sbjct: 313 KEAYERGTSVYVTDRVVPMLPERLSNGICSLNP--RINRLTQSCVMEISPEGRVINYQIS 370
Query: 297 NSIIKPTYMLTYESATELL---HLNLEEEAEL----KILSEAAALRLQWRLQQGAIDTAT 349
SIIK T +TY++ +++ LE A++ KI+ E + R ++GAID T
Sbjct: 371 QSIIKTTERMTYDAVNQMIAGDEAALENYAKIADSVKIMVELHHILEAMRKRRGAIDFDT 430
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR--G 407
+E +I V P I + A R++ M+ E +AT+ + L YR
Sbjct: 431 VEAKIIVNEKGLPIEI----RKRTRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHE 486
Query: 408 QPQSN-----IDVSA-FAHLPEGP-----------------------VRSSAIVKIMRAA 438
QP+++ ID +A F EG V S+ +++ M+ A
Sbjct: 487 QPKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQA 546
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
G L Y FTSPIRRY DLL H
Sbjct: 547 RYSENNEGHFG-LAAENYTHFTSPIRRYPDLLVH 579
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 156/328 (47%), Gaps = 40/328 (12%)
Query: 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKD 240
+L+ RKDL + ID ++A + DDA+S +L +G + +H+AD + Y++ GS D++
Sbjct: 242 DLVGRKDLRDKVIVTIDGEDAKDFDDAISVEKLPNGNYLLGVHIADVSHYVKEGSALDQE 301
Query: 241 AMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSII 300
A KRGTSV+L PM P +L+ SL +G+ ++V + + DG + Y V S+I
Sbjct: 302 AFKRGTSVYLIDTVIPMLPFRLSNGICSLVEGKDRLTMSVEMEIDRDGRVVRYDVYPSVI 361
Query: 301 KPTYMLTYESATELLH--LNLEEEAELKIL----SEAAALRLQWRLQQGAI-DTATLETR 353
K + YE E L +++E K L E A + + R ++GAI D + E
Sbjct: 362 KSKKRMIYERVNEFLEDPSSMKEYEPFKDLIYNAVELAEILREARRKRGAILDIESDE-- 419
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNI 413
+KV E+ + ++++ V + A +L+ E MI E +A L YR + +
Sbjct: 420 VKVILDENGQ-VVDI-VPRKRGIAEKLIEEFMIRANETVAEIFDHAGLPFMYRVHEEPDP 477
Query: 414 DV--------------SAFAH-------------LPEGPVRSSAIVKIMRAAAIDFRKPV 446
+ + F+H + + P+RSS ++R+ V
Sbjct: 478 ETIFQLKNYLEAMGIRAKFSHKIHPGMLQKLLEKVKDHPLRSSVERLLVRSMKRAMYSAV 537
Query: 447 RHGVLGLP--GYVQFTSPIRRYMDLLAH 472
G GL Y FTSPIRRY DL+ H
Sbjct: 538 NIGHFGLASYAYTHFTSPIRRYPDLVVH 565
>sp|C3LW69|RNB_VIBCM Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain M66-2)
GN=rnb PE=3 SV=1
Length = 678
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>sp|Q9KLE1|RNB_VIBCH Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=rnb PE=3 SV=1
Length = 678
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 162/367 (44%), Gaps = 49/367 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A+ I P VT + + I ++ Q +D L R+DLT L ID + ++DD
Sbjct: 156 ANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLTALPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A +L +G + I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYMLTYESATELLHLNLEEEA 323
SL + +V A+ SV + DG I + + N IK L Y+ ++ L E+
Sbjct: 275 CSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARLVYDHVSDWLETGSSEQW 332
Query: 324 E--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQAD 375
+ ++ L + R WR + + R +++ D ++ ++ D
Sbjct: 333 QPSEEIAQVVRDLYAFSQARANWRETHAVVFPDRPDYRFELSADND---VVAIHA-DMRR 388
Query: 376 PAMRLVSEMMI---LC-GEAIAT---YGSFNNLA-------------LPYRGQPQSNID- 414
A RLV E MI +C G+ + T +G FN A + G P ++ +
Sbjct: 389 TANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMADVVELMAVNGAPNADAET 448
Query: 415 ---VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRR 465
V FA L E + I K + I +P+ H +GL Y +TSPIR+
Sbjct: 449 LATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPHFAMGLDVYATWTSPIRK 507
Query: 466 YMDLLAH 472
Y D++ H
Sbjct: 508 YGDMINH 514
>sp|Q7MEL4|RNB_VIBVY Exoribonuclease 2 OS=Vibrio vulnificus (strain YJ016) GN=rnb PE=3
SV=2
Length = 664
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 161/368 (43%), Gaps = 51/368 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I ++ Q +D L R D+TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAENDLPNSEPAGIDDW-QIKDDADLERIDMTHIPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + G ++ I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAKKNDAGDFELTIAIADPTAYITPDDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--- 322
SL +GE+ A+ +V + DG I + + IK L Y++ ++ L E+
Sbjct: 275 CSLIEGEIRPALCCTVTVSKDGVIGDDIQFFAANIKSHARLAYDNVSDWLETGSCEKWQP 334
Query: 323 -----AELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
A ++ L E + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIAAIVRDLYEFSQARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LC-GEAIATY---GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA 430
RLV E MI +C G+ + + G FN A +P+ DV + PEG + +A
Sbjct: 391 NRLVEESMITANICAGKTLQAHFGTGVFNCHA---GFKPEKIADVVELVN-PEGTLEFTA 446
Query: 431 IVKIMRAAAIDFRK--------------------------PVRHGVLGLPGYVQFTSPIR 464
R R+ P+ H +GL Y +TSPIR
Sbjct: 447 ESIATREGFAALRRWLSKQETTYLDNRIRKFQTYSEVSNQPLPHYAMGLDIYATWTSPIR 506
Query: 465 RYMDLLAH 472
+Y D++ H
Sbjct: 507 KYGDMINH 514
>sp|Q8D7K6|RNB_VIBVU Exoribonuclease 2 OS=Vibrio vulnificus (strain CMCP6) GN=rnb PE=3
SV=1
Length = 664
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 161/368 (43%), Gaps = 51/368 (13%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I ++ Q +D L R D+TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAENDLPNSEPAGIDDW-QIKDDADLERIDMTHIPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + G ++ I +ADPT YI P DK A +RG +++LP PM P LA E
Sbjct: 215 ALYAKKNDAGDFELTIAIADPTAYITPDDEMDKVARERGFTIYLPGRNIPMLPRDLADEL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--- 322
SL +GE+ A+ +V + DG I + + IK L Y++ ++ L E+
Sbjct: 275 CSLIEGEIRPALCCTVTVSKDGVIGDDIQFFAANIKSHARLAYDNVSDWLETGSCEKWQP 334
Query: 323 -----AELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
A ++ L E + R +WR + + + R +++ D ++ ++ D A
Sbjct: 335 SEEIAAIVRDLYEFSQARAEWREKNAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LC-GEAIATY---GSFNNLALPYRGQPQSNIDVSAFAHLPEGPVRSSA 430
RLV E MI +C G+ + + G FN A +P+ DV + PEG + +A
Sbjct: 391 NRLVEESMITANICAGKTLQGHFGTGVFNCHA---GFKPEKIADVVELVN-PEGTLEFTA 446
Query: 431 IVKIMRAAAIDFRK--------------------------PVRHGVLGLPGYVQFTSPIR 464
R R+ P+ H +GL Y +TSPIR
Sbjct: 447 ESIATREGFAALRRWLSKQETTYLDNRIRKFQTYSEVSNQPLPHYAMGLDIYATWTSPIR 506
Query: 465 RYMDLLAH 472
+Y D++ H
Sbjct: 507 KYGDMINH 514
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 139/326 (42%), Gaps = 44/326 (13%)
Query: 185 RKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKR 244
R+DL + ID ++A + DDA++ +G K+Y+H+AD + Y+ G+ +DK+A KR
Sbjct: 240 RRDLREQLCFTIDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKR 299
Query: 245 GTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTY 304
G + + P M PEKL+ + SLR E A TV +V G++ Y + S+I+
Sbjct: 300 GFTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDIYESVIRSKA 359
Query: 305 MLTYESATELL---------HLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRIK 355
LTY A L+ NL E L+++ + + R + G+ID E +
Sbjct: 360 RLTYNEALALIVGDPALEKKFPNLVE--PLRMMETLYRILSRKRWEMGSIDFDLPEAEVI 417
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYR-GQPQSNID 414
V +P I + A R++ MI E +A + YR +P
Sbjct: 418 VDEYGEPTAIYPY----ERHVAHRIIEHFMISANETVALHLEHAGYPCLYRVHEPPDEEK 473
Query: 415 VSAFAHLPEG------------PVRSSAIVK--------------IMRAAAIDFRKP--V 446
V + EG P I++ +RA A P V
Sbjct: 474 VENLLEILEGLGYKVKRPHEYTPKFFQKIIEDFEGRPEENLVRFLTLRAMARAKYSPHNV 533
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H L L Y FTSPIRRY D++ H
Sbjct: 534 GHFGLALEHYAHFTSPIRRYPDIIVH 559
>sp|A5F0G1|RNB_VIBC3 Exoribonuclease 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541
/ Ogawa 395 / O395) GN=rnb PE=3 SV=1
Length = 678
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 119/444 (26%), Positives = 192/444 (43%), Gaps = 55/444 (12%)
Query: 76 VMQELVAIRKRLRVF-AKVKVSSGELLEDKLENQV-LQKGLLLEFKKDSDRVLLAVAQRP 133
+ Q L R+++F K+ V+ KL + +KGL ++ D V+ + + P
Sbjct: 79 IEQSLTRFIGRVKLFKGKLNVAPDHPQLKKLSLKAKTKKGLNEADFQEGDWVVAHLVRHP 138
Query: 134 ----DGKKNWMVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLT 189
DG + + A+ I P VT + + I ++ Q +D L R+DLT
Sbjct: 139 LKGDDGFFVQISHKITDANDKIAPWWVTLAENDLPNSEPAGIDDW-QLKDDADLVREDLT 197
Query: 190 HLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVF 249
L ID + ++DDAL A +L +G + I +ADPT YI P DK A +RG +++
Sbjct: 198 ALPFVTIDGESTKDMDDALYAQQLPNGDFALTIAIADPTAYITPEDEMDKVARERGFTIY 257
Query: 250 LPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE---YSVDNSIIKPTYML 306
LP PM P LA E SL + +V A+ SV + DG I + + N IK L
Sbjct: 258 LPGRNIPMLPRDLADELCSLMENQVRPALCCSVTIRKDGVIGDDIRFFAAN--IKSHARL 315
Query: 307 TYESATELLHLNLEEEAE--------LKILSEAAALRLQWRLQQGAIDTATLETRIKVAN 358
Y+ ++ L E+ + ++ L + R W + + R +++
Sbjct: 316 VYDHVSDWLETGSSEQWQPSEEIAQVVRDLYAFSQARANWCETHAVVFPDRPDYRFELSA 375
Query: 359 PEDPEPIINLYVEDQADPAMRLVSEMMI---LC-GEAIAT---YGSFNNLA--------- 402
D ++ ++ D A RLV E MI +C G+ + T +G FN A
Sbjct: 376 DND---VVAIHA-DMRRTANRLVEESMITANICAGKTLQTTFGFGVFNTHAGFKAEKMAD 431
Query: 403 ----LPYRGQPQSNID----VSAFAHL------PEGPVRSSAIVKIMRAAAIDFRKPVRH 448
+ G P ++ + V FA L E + I K + I +P+ H
Sbjct: 432 VVELMAVNGAPNADAETLATVEGFAALRRWLATQETSYLDNRIRKYQSYSEIG-NQPLPH 490
Query: 449 GVLGLPGYVQFTSPIRRYMDLLAH 472
+GL Y +TSPIR+Y D++ H
Sbjct: 491 FAMGLDVYATWTSPIRKYGDMINH 514
>sp|Q87IJ9|RNB_VIBPA Exoribonuclease 2 OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnb PE=3 SV=1
Length = 668
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 163/366 (44%), Gaps = 47/366 (12%)
Query: 147 ASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDD 206
A I P VT + + I N+ K +D L R ++TH+ ID + ++DD
Sbjct: 156 ADDKIAPWWVTLAQNDLPNSEPAGIENWELK-DDADLERIEMTHVPFVTIDGESTKDMDD 214
Query: 207 ALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEG 266
AL A + + G ++ I +ADPT YI P DK A +RG +++LP PM P LA
Sbjct: 215 ALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNL 274
Query: 267 MSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIKPTYMLTYESATELLHLN------- 318
SL +GE+ A+ +V + DG I + + IK L Y+ ++ L
Sbjct: 275 CSLIEGEIRPAICCTVTVSKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGNSDAWQP 334
Query: 319 LEEEAEL-KILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPA 377
EE A + + L E + R +WR + + + R +++ D +I ++ D A
Sbjct: 335 SEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDND---VIAIHA-DMRRSA 390
Query: 378 MRLVSEMMI---LCG-----EAIATYGSFNNLA--LPYRGQ-------PQSNIDVSA--F 418
RLV E MI +C E T G FN A P + + P+ ++ +A
Sbjct: 391 NRLVEESMITANICAGRTLREKFET-GVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESI 449
Query: 419 AHLPEGPVRSSAIVKIMRAAAIDFR------------KPVRHGVLGLPGYVQFTSPIRRY 466
A L EG + + + +D R +P+ H +GL Y +TSPIR+Y
Sbjct: 450 ATL-EGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKY 508
Query: 467 MDLLAH 472
D++ H
Sbjct: 509 GDMINH 514
>sp|B7VSB8|RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendidus (strain LGP32) GN=rnb PE=3
SV=1
Length = 668
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/402 (26%), Positives = 172/402 (42%), Gaps = 47/402 (11%)
Query: 113 GLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQN----GASCSIKPQQVTFVVPGVEKFDH 168
GL E K+ D V+ + Q P N + + A I P VT + +
Sbjct: 118 GLNPETLKEGDWVVAHIVQHPLKGDNGFLAQISEKITDADDKIAPWWVTLAQNDLPNSEP 177
Query: 169 KDISNFLQKAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+ I ++ Q +D L R D+TH+ ID + ++DDAL A + ++G ++ I +ADPT
Sbjct: 178 EGIDDW-QIKDDADLERVDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPT 236
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDG 288
YI P DK A +RG +++LP PM P LA SL + EV A+ +V + DG
Sbjct: 237 AYISPDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDG 296
Query: 289 SIA-EYSVDNSIIKPTYMLTYESATELLHLNLEEE--------AELKILSEAAALRLQWR 339
I + + + IK L Y+ ++ L E+ A + L + A R WR
Sbjct: 297 VIGDDINFFAANIKSHARLAYDHVSDWLETGASEKWQPSEEIAAIVSDLHQFAQARSAWR 356
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIA--- 393
+ + R +++ D ++ ++ D A +LV E MI +C +
Sbjct: 357 SANAVVFPDRPDYRFELSEDND---VVAIHA-DMRRSANKLVEESMISANICAGRVLKES 412
Query: 394 -TYGSFN--------------NLALPYRGQPQSN---IDVSAFAHLPE--GPVRSSAI-- 431
G FN L P P + + + FA L G + +S
Sbjct: 413 FNQGVFNCHSGFKAEKLTDVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYYDN 472
Query: 432 -VKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
++ +A + +P H +GL Y +TSPIR+Y D++ H
Sbjct: 473 RIRKFQAYSEISNEPAPHYAMGLDIYATWTSPIRKYGDMINH 514
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 154/342 (45%), Gaps = 42/342 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E+++ NR+DL HL V ++D ++DDAL L +G ++V +H+AD + +I PG+
Sbjct: 460 TEEDMKNREDLRHLCVCSVDPPGCTDIDDALHCRELSNGNLEVGVHIADVSHFIRPGNAL 519
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D+++ +RGT+V+L M PE L+ SLR A + ++ + I +
Sbjct: 520 DQESARRGTTVYLCEKRIDMVPELLSSNLCSLRSNVDRLAFSCIWEMNHNAEILKTRFTK 579
Query: 298 SIIKPTYMLTYESATELLH---LNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
S+I LTY A + +N + L+ L++ A + + R+++GA+ ++ E R
Sbjct: 580 SVINSKASLTYAEAQMRIDSAAMNDDITTSLRGLNQLAKILKKGRIEKGALTLSSPEIRF 639
Query: 355 KV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQP 409
+ + DP I+L ++ + +V E M+L ++A + F+ AL + P
Sbjct: 640 HMDSETHDP---IDLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPP 695
Query: 410 QSNIDVSAFAHLPEGPVRSSAIVKIM-----RAAAIDF---------------------- 442
SN D+ A + + K + RA + DF
Sbjct: 696 PSNYDILVKAAKSKNLQIKTDTAKSLADSLDRAESPDFPYLNTLLRILATRCMMQAVYFC 755
Query: 443 ---RKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
H L P Y FTSPIRRY D++ H + + A
Sbjct: 756 SGMDNDFHHYGLASPIYTHFTSPIRRYADIIVHRLLAVAIGA 797
>sp|P47350|RNR_MYCGE Ribonuclease R OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=rnr PE=3 SV=1
Length = 725
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/463 (24%), Positives = 187/463 (40%), Gaps = 88/463 (19%)
Query: 80 LVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFK--KDSDRVLLAVAQRPDGKK 137
++ I KR R+ + +G L D Q LE+K D+ R L + PD
Sbjct: 140 VITILKRARI-----LYAGNFLVD-------QNEFALEYKIVADNPRFYLTMIVNPDSIP 187
Query: 138 NWMV-----------YDQNGASCSIKPQQV------------TFVVPGVEKFDHKDI--- 171
N + YD + C + QQV ++ F+ D+
Sbjct: 188 NNLASNTKIAFQIDEYDPDNNLCKVSVQQVLGNNDDPLINIKAIMLDNSIVFETNDVVEQ 247
Query: 172 -SNFLQ--KAEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPT 228
+N L E + R+DLT L +D + +LDDA+ + G + +Y+ +AD
Sbjct: 248 HANKLSFDTEEQHKAYRQDLTDLAFVTVDPTTSKDLDDAIYVKTIPTGFV-LYVAIADVA 306
Query: 229 KYIEPGSLSDKDAMKRGTSVFLPTA-TYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD 287
Y+ S D +A + +S++LP PM PE+L+ + SL + V + +
Sbjct: 307 HYVNRNSEIDIEAKHKTSSIYLPGHYVVPMLPEQLSNQLCSLNPAQKRYVVVCEISFDNQ 366
Query: 288 GSIAEYSVDNSIIKPTYMLTYESATELLH----LNLEEEA--ELKILSEAAALRLQWRLQ 341
G I + + I +Y+ + L+ LN +E LK + L R +
Sbjct: 367 GRIKTNKLYPATIISKNRFSYDQVNKWLNNKSELNCDETVINSLKAAFTLSDLIQAQRQK 426
Query: 342 QGAIDTATLETRIKVANPEDPEPI-INLYVEDQADPAMRLVSEMMILCGEAIATYGSFNN 400
+G ID + ET I V E PI IN V D+A+ ++ +M++ E +A + N
Sbjct: 427 RGTIDLSHKETEIVV--DEHYFPIKINFLVHDKAE---TMIENLMVVANETVAWVLTNNK 481
Query: 401 LALPYR----------------------GQPQSNIDVSAFAHLP-------EGPVRSSAI 431
+ALPYR +PQ N+D + + + P +
Sbjct: 482 IALPYRVHPRPSKKKLQSLIETVGELNITKPQFNLDTVTSSQIASWLNENKDNPSYEIFV 541
Query: 432 VKIMRAAAIDFR--KPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ ++R F P+ H +G Y FTSPIRRY+DL H
Sbjct: 542 ILLLRTLGKAFYSVNPLMHFSIGSNHYTHFTSPIRRYIDLTIH 584
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 50/341 (14%)
Query: 174 FLQKAED-NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIE 232
F +K D +L +R+D + Y ID D++ +LDDA+ +L + ++ +H+AD + Y+
Sbjct: 190 FSEKLTDSDLQDREDYRNEITYTIDGDDSKDLDDAIHVKKLSNWHFELGVHIADVSHYVT 249
Query: 233 PGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSD--GSI 290
GS D++A R TSV++ PM P KL+ SL + + +T+S ++ D G I
Sbjct: 250 EGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLNEAQ--ERLTMSCLMEIDDKGKI 307
Query: 291 AEYSVDNSIIKPTYMLTYESATELLHLNLEEEAE-----------LKILSEAAALRLQWR 339
Y + S+IK TY +TY + +++H E E +K+ E + R
Sbjct: 308 VSYKISPSVIKTTYRMTYNNVNKMIHQGQEGHREALENFFKITDSIKVAVELHEILETMR 367
Query: 340 LQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN 399
+G I+ E +I + P I V+ D A R++ M++ E +A F
Sbjct: 368 KDRGMIEFDESEAKIILDEKGHPIEI----VKRDRDTAERMIESFMLMANETVAL--DFQ 421
Query: 400 NLALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDF----------------- 442
LP + N +FA L E + + AI+F
Sbjct: 422 KKKLPSLYRVHDNPKEKSFAKLMEAAANAGFSLNSDSHQAINFFADEIKGTSSEKALTYQ 481
Query: 443 -----------RKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
K +H L Y FTSPIRRY DL+ H
Sbjct: 482 LRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIH 522
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 42/342 (12%)
Query: 178 AEDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLS 237
E ++ NR+DL HL + ++D ++DDAL L++G ++V +H+AD + +I PG+
Sbjct: 460 TEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNAL 519
Query: 238 DKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDN 297
D+++ +RGT+V+L M PE L+ SL+ A + ++ + I +
Sbjct: 520 DQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTK 579
Query: 298 SIIKPTYMLTYESA---TELLHLNLEEEAELKILSEAAALRLQWRLQQGAIDTATLETRI 354
S+I LTY A + ++N + L+ L++ A + + R+++GA+ ++ E R
Sbjct: 580 SVINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRF 639
Query: 355 KV-ANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--YGSFNNLAL--PYRGQP 409
+ + DP I+L ++ + +V E M+L ++A + F+ AL + P
Sbjct: 640 HMDSETHDP---IDLQTKELRE-TNSMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPP 695
Query: 410 QSNIDVSAF-----------------------AHLPEGP-----VRSSAIVKIMRAAAI- 440
SN ++ A P P +R A +M+A
Sbjct: 696 PSNYEILVKAARSRNLEIKTDTAKSLAESLDQAESPTFPYLNTLLRILATRCMMQAVYFC 755
Query: 441 -DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAA 481
H L P Y FTSPIRRY D++ H + + A
Sbjct: 756 SGMDNDFHHYGLASPIYTHFTSPIRRYADVIVHRLLAVAIGA 797
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 167/396 (42%), Gaps = 78/396 (19%)
Query: 150 SIKPQQVTFVVP-GVEKFDHKDISNFLQKA-EDNLLNRKDLTHLKVYAIDVDEADELDDA 207
+I+ Q+ + P VEK I N ++ E+ + R DL L + ID ++A + DDA
Sbjct: 234 AIRTHQIPYEWPEAVEK----QIVNLGEEVPEEAKVGRVDLRELPLVTIDGEDARDFDDA 289
Query: 208 LSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGM 267
+ + +DG ++++ +AD + Y+ P S DK+A+ RG SV+ P+ PM PE L+
Sbjct: 290 VFCEKKKDGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLC 349
Query: 268 SLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLN--------- 318
SL + + + G ++ Y +++ LTY + +L +
Sbjct: 350 SLNPQVDRLCMVCEMTISESGKLSSYKHYEAVMNSHARLTYSKVSAILEGDEELRERYQP 409
Query: 319 ----LEE-EAELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPEDP----EPIINLY 369
LEE A K+L EA R Q+GAI+ T+ET+ + N E EP+I
Sbjct: 410 LVSHLEELHAMYKVLKEA-------RDQRGAIEFETVETKF-IFNAERKIESIEPVIR-- 459
Query: 370 VEDQADPAMRLVSEMMILCGEAIAT------------------------YGSF-NNLALP 404
+ A +++ E MIL A A+ + F + L L
Sbjct: 460 -----NDAHKIIEECMILANIASASLVEKAKEPALYRIHESPGELRLQGFRDFLSELGLE 514
Query: 405 YRG----QPQSNIDVS-AFAHLPEGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQF 459
+G P D++ A + + + +++ M+ A + G L L Y F
Sbjct: 515 LKGGLEPSPTDYADLARQIAGRQDQELIQTMLLRSMKQAVYNADNAGHFG-LALKRYAHF 573
Query: 460 TSPIRRYMDLLAHYQV--------GLQAAAWVSVGA 487
TSPIRRY DLL H + G W G
Sbjct: 574 TSPIRRYPDLLLHRAIKYLIAKEEGRNQDRWTPTGG 609
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 149/337 (44%), Gaps = 51/337 (15%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKD + +ID ++DDAL A L +G +V +H+AD T +++P + D +A
Sbjct: 495 NRKDFRDKLICSIDPPGCQDIDDALHACVLPNGNYEVGVHIADVTHFVKPNTSMDSEAAS 554
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPT 303
RGT+V+L M P L + SLR A + + + +I + S+I
Sbjct: 555 RGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIWEMDENANIIKVHFTKSVIASK 614
Query: 304 YMLTYESATELLHLNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATLETRIKVANPE 360
+Y A + ++ +++L + + + Q R+ +GA++ A+ E RI+ N E
Sbjct: 615 EAFSYADAQARIDDQKMQDPLTQGMRVLLKLSKILKQKRMDEGALNLASPEVRIQTDN-E 673
Query: 361 DPEPI---INLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYR--GQPQSNI 413
+P+ I +E + LV E M+L ++A Y +F A+ R P +N
Sbjct: 674 TSDPMDVEIKQLLETNS-----LVEEFMLLANISVAQKIYDAFPQTAVLRRHAAPPLTNF 728
Query: 414 D-------VSAFAHL-----------------PEGPVRSSAIVKIMRAAAI--------- 440
D V HL P+ P ++ +++I+ +
Sbjct: 729 DSLQDILRVCKGMHLKCDTSKSLAKSLDECVDPKEPYFNT-LLRILTTRCMLSAEYFCSG 787
Query: 441 DFRKP-VRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
F P RH L P Y FTSPIRRY D+LAH Q+
Sbjct: 788 TFAPPDFRHYGLASPIYTHFTSPIRRYADVLAHRQLA 824
>sp|B4T6U4|RNB_SALNS Exoribonuclease 2 OS=Salmonella newport (strain SL254) GN=rnb PE=3
SV=1
Length = 644
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPENEDIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 142/332 (42%), Gaps = 42/332 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGR--IKVYIHVADPTKYIEPGSL 236
E + NR DL HL + ID ++A + DDA+ + +G K+++ ++D + YI+P +
Sbjct: 256 EKDFKNRIDLRHLPFFTIDEEDARDFDDAIFCKKKTNGEKGWKLWVAISDVSYYIQPDTA 315
Query: 237 SDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVD 296
DK A KRGTS++ P+ PM PEK++++ SL ++ + L + G + Y
Sbjct: 316 LDKAASKRGTSIYFPSLVIPMLPEKISIDVCSLNPNAERLSLICEMNLSNKGELITYKHY 375
Query: 297 NSIIKPTYMLTYESATEL----LHLNLEEEAELKILSEAAALR---LQWRLQQGAIDTAT 349
++I TY ++ + L + + LK + ++L+ ++ + + I
Sbjct: 376 EAVICSHGRFTYNEIFKIWNGDIELCFKYKKLLKYIQNLSSLQKILKKYNVSKRGIYFEN 435
Query: 350 LETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQP 409
+E + + D I ++ + A + + MIL A A + + + +R
Sbjct: 436 IEAKFIL----DSNYRIKNISQNIRNDAHKFIESCMILANIASAEFVKKHKSPVLFRNHD 491
Query: 410 QSNID--------------VSAFAHLPEGPVRSSAIVKI-------------MRAAAIDF 442
+ + D +PE S + KI +R+
Sbjct: 492 RPDKDSIINFRSVLKKLGLSLLGGEIPESTDYSELLKKISTRPDYEMIQTILLRSMKQAV 551
Query: 443 RKPVRHGVLG--LPGYVQFTSPIRRYMDLLAH 472
P G G L YV FTSPIRRY DLL H
Sbjct: 552 YSPDNRGHFGLSLSSYVHFTSPIRRYPDLLVH 583
>sp|Q8Z7C9|RNB_SALTI Exoribonuclease 2 OS=Salmonella typhi GN=rnb PE=3 SV=1
Length = 644
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLVYDNVSDWLENNSTWQPENEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q8K9Q5|RNB_BUCAP Exoribonuclease 2 OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnb PE=3 SV=1
Length = 646
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 140/326 (42%), Gaps = 42/326 (12%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
+R+DLTHL ID ++DDAL + +G +++ + +ADPT YI+ GS D A K
Sbjct: 189 HREDLTHLNFITIDNFNTKDIDDALFIEEIHNGNLRLIVAIADPTSYIKSGSKLDITAAK 248
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNSIIKP 302
RG + +LP PM P L+ + SL E + + + DG+I ++ + + IK
Sbjct: 249 RGFTNYLPGFNVPMLPRSLSEDICSLNPHERRPVLACCITILKDGNICSKINFFLAWIKS 308
Query: 303 TYMLTYESATELLHLNLEEEAELKILSE-------AAALRLQWRLQQGAIDTATLETRIK 355
L+Y++ ++ + + E K + LR++WR + +LE R +
Sbjct: 309 KSKLSYDNVSDWIEKKSSWKPETKSIENQILLLHRLCLLRIKWRTSNAVLFQDSLEYRFQ 368
Query: 356 VANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT-------YGSFNNLA------ 402
+ I+ V ++ A +++ E MI+ + A +G +N A
Sbjct: 369 FSE----TGIVEDVVIEKRRIAHKIIEESMIIANISAANFLSKNLGFGIYNTHAGFDPIN 424
Query: 403 ----LPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR------------KPV 446
+ + V L +G ++ I+ I+ R P
Sbjct: 425 AENVVSFLNNYNLKFTVKEITTL-KGFCNLRRVLNILSDNYINSRIRRYQSFGDFSITPS 483
Query: 447 RHGVLGLPGYVQFTSPIRRYMDLLAH 472
H LGL Y +TSPIR+Y D++ H
Sbjct: 484 PHFALGLVEYATWTSPIRKYSDMINH 509
>sp|B4EW02|RNB_PROMH Exoribonuclease 2 OS=Proteus mirabilis (strain HI4320) GN=rnb PE=3
SV=1
Length = 647
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 43/328 (13%)
Query: 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
L R+DLT L ID +++DDAL + ++G++ +YI +ADPT YI+P S D A
Sbjct: 190 LPREDLTALSFVTIDSASTEDMDDALYIRKEENGQLSLYIAIADPTAYIQPNSELDTIAA 249
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDNSIIK 301
+R + +LP PM P +L+ SLR E A+ V + DG++ E ++ ++
Sbjct: 250 QRALTNYLPGFNIPMLPRELSDNLCSLRPNEKRPALVCQVGIMEDGALTDEIHFYSAWVE 309
Query: 302 PTYMLTYESATELLHLNLEEEA--------ELKILSEAAALRLQWRLQQGAIDTATLETR 353
L Y++ ++ L + A ++ +L E + R WR Q + + R
Sbjct: 310 SKAKLVYDNISDWLEGEETQWAPENEIVHEQVMLLKEMSEKRHVWREQHALVFKERPDYR 369
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIAT----------YGSFNN 400
+ +D ++++ E + A R+V E MI +C + + + F+
Sbjct: 370 FIL---DDSGNVLDIVAEKRRT-ANRIVEEAMITANICAAKVLSRNLGFGIYNVHTGFDP 425
Query: 401 LALPYRGQP--QSNIDVSAFAHLP-EGPVR-------------SSAIVKIMRAAAIDFRK 444
L + Q + I+ +A L EG R S I + A I +
Sbjct: 426 LYIDQVSQTLKEHGIETNADELLTLEGFCRLRRELDNQPNQFLDSRIRRFQNFAEIK-TE 484
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
P H LGL Y +TSPIR+Y D+L H
Sbjct: 485 PGPHFGLGLEAYATWTSPIRKYSDILNH 512
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 102/351 (29%), Positives = 157/351 (44%), Gaps = 62/351 (17%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D + R+DL ++ ID A +LDDAL+ RL DG +V +H+AD + ++ GS DK
Sbjct: 364 DEVGKRRDLRKDCIFTIDPSTARDLDDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDK 423
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDN 297
A +R TSV+L PM P L E SL + + +T SV+ L +G I E
Sbjct: 424 VAAERATSVYLVQKVVPMLPRLLCEELCSL--NPMTDKLTFSVIWKLTPEGKILEEWFGR 481
Query: 298 SIIKPTYMLTYESATELLHLNLEE--EAELKILS--------EAAALRL-----QWRLQQ 342
+II+ L+Y+ A ++ E+ E EL +S A L L Q R Q+
Sbjct: 482 TIIRSCTKLSYDHAQSMIENPTEKIPEEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQR 541
Query: 343 GAIDTATLETRIKVANPEDPEPII--NLYVEDQADPAMRLVSEMMILCGEAIA--TYGSF 398
+D A ++K+A D E + ++ + D + +LV E M+L A+A + +F
Sbjct: 542 -FVDGALRLDQLKLAFTLDHETGLPQGCHIYEYRD-SNKLVEEFMLLANMAVAHKIFRTF 599
Query: 399 NNLALPYRG-QPQSNI--DVSAFAH---LPEGPVRSSAIVKIMRAAAID----------- 441
AL R PQ+ + D+ F LP + A+ K + D
Sbjct: 600 PEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVL 659
Query: 442 ---FRKPV-----------------RHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ +P+ RH L +P Y FTSPIRR+ D++ H
Sbjct: 660 TNMYSRPMQMALYFCSGMLQDQEQFRHYALNVPLYTHFTSPIRRFADVIVH 710
>sp|B5BIE3|RNB_SALPK Exoribonuclease 2 OS=Salmonella paratyphi A (strain AKU_12601)
GN=rnb PE=3 SV=1
Length = 644
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLVYDNVSDWLENNGTWQPENEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q5PCZ6|RNB_SALPA Exoribonuclease 2 OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=rnb PE=3 SV=1
Length = 644
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + E +++L R +WR + +
Sbjct: 304 TIESKAKLVYDNVSDWLENNGTWQPENEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 65/346 (18%)
Query: 182 LLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDA 241
L RKDL + +ID ++DDAL A +L +G +V +H+AD T +++PG+ D +
Sbjct: 528 LTKRKDLRDKLICSIDPPGCVDIDDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEG 587
Query: 242 MKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIK 301
RGTSV+L M P L + SL+ A +V L +I + S+I+
Sbjct: 588 AARGTSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIR 647
Query: 302 PTYMLTYESATELLHLNLEEEAELKILSEAAALRL-----QWRLQQGAIDTATLETRI-- 354
+YE A L ++ + + + + A L+L Q RL+ GA++ A+ E ++
Sbjct: 648 SREAFSYEQAQ--LRIDDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHM 705
Query: 355 --KVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNNLALPYR--GQ 408
+ ++P + E I L + LV E M+L ++A Y +F A+ R
Sbjct: 706 DSETSDPNEVE-IKKLLATNS------LVEEFMLLANISVARKIYDAFPQTAMLRRHAAP 758
Query: 409 PQSNIDV------------------SAFAHL------PEGPVRSSAIVKIMRAAAI---- 440
P +N ++ A A PE P ++ +V+IM +
Sbjct: 759 PSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNT-LVRIMSTRCMMAAQ 817
Query: 441 ----------DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVG 476
DF RH L + Y FTSPIRRY D++AH Q+
Sbjct: 818 YFYSGAYSYPDF----RHYGLAVDIYTHFTSPIRRYCDVVAHRQLA 859
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 164/383 (42%), Gaps = 69/383 (18%)
Query: 140 MVYDQNGASCSIKPQQVTFVVPGVEKFDHKDISNFLQKAEDNLLN--RKDLTHLKVYAID 197
+VYD NG + PQ V D+++ L+ D N R+ + ++ +ID
Sbjct: 216 IVYD-NGIDPTFDPQVV-------------DLASKLEFYVDEHQNKIRRSIIDREIISID 261
Query: 198 VDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPM 257
+ ++DDA+ +L D R + I +AD + Y++P ++ D DA KRGTS +L PM
Sbjct: 262 PVGSKDIDDAVYVKKLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTSTYLVDRVIPM 321
Query: 258 FPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHL 317
P ++ SL +GE +T +V+ DG I V +I+K ++Y+ +
Sbjct: 322 LPHNISNNICSLNEGEFRMCITCDMVIDKDGKICWKDVYPAIMKNYRQMSYDEVNDFYEG 381
Query: 318 NLE-EEAEL---KILSEAAALRLQWR---LQQGAIDTATLETRIKVANPEDPEPI-INLY 369
E A L ++L EA L R ++ G +D E +I + E PI I +Y
Sbjct: 382 KSRFESATLTMKEMLLEAKELHHILRNKKIKDGYVDFDIKEPKIIL--DETGVPIDIKIY 439
Query: 370 VEDQADPAMRLVSEMMILCGEAIATYGSFN--------NLALP--YRGQPQSNI------ 413
+ A +V + MI EA+ + + NL +P YR + +I
Sbjct: 440 ---ERKTAQMMVEDFMIAANEAVTMFAEEHMDKTLKEFNLEMPFIYRVHDKPSIINLQKF 496
Query: 414 ---------------------DVSAFAHLPEGPVRSSAIVK-IMRAAAIDFRKPVRHGVL 451
+S + + + V I K ++R+ A + + G
Sbjct: 497 EIEAKKLSFNISHDFENIQPNTISNWLKMNDNHVNLPLISKLLLRSMAKASYEIINTGHF 556
Query: 452 GLP--GYVQFTSPIRRYMDLLAH 472
GL Y FTSPIRRY DL+ H
Sbjct: 557 GLASDNYTHFTSPIRRYPDLIVH 579
>sp|B5R9Y0|RNB_SALG2 Exoribonuclease 2 OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=rnb PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|B8D7G3|RNB_BUCAT Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain Tuc7) GN=rnb PE=3 SV=1
Length = 649
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 161/370 (43%), Gaps = 53/370 (14%)
Query: 179 EDNLL-----NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
ED+L+ NRKDLT L ID ++DDAL +G I + + +ADPT YI+
Sbjct: 179 EDDLILKESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKH 238
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-- 291
GS D A KR + +LP PM P L+ + SL + + + + +G+I+
Sbjct: 239 GSKLDVIASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNK 298
Query: 292 -EYSVDNSIIKPTYMLTYESATELLHL-------NLEEEAELKILSEAAALRLQWRLQQG 343
E+ + + IK L+Y+ ++ + ++ IL LR++WR +
Sbjct: 299 IEFFL--AWIKSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNA 356
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN---- 399
+ ++E R V+ + II++ +E + A +++ E MI+ + A + S N
Sbjct: 357 VLFKDSIEYRFHVS---EHGKIIDVLIEKRR-IAHKIIEESMIVANISAANFLSKNIGFG 412
Query: 400 --NL-----------ALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR--- 443
N+ A+ + N V L +G ++ I+ ID R
Sbjct: 413 IYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTL-KGFCNLRRVLNIISNNYIDSRIRR 471
Query: 444 ---------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVE 494
P H LG Y +TSPIR+Y D++ H L++ + G++++
Sbjct: 472 FQSFGDFSTIPGPHFALGFSEYATWTSPIRKYSDMINHRL--LKSIIKKEKSIKPGEDIK 529
Query: 495 VKVEEAHPRD 504
+K+ E R+
Sbjct: 530 IKISEQRRRN 539
>sp|B8D959|RNB_BUCA5 Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain 5A) GN=rnb PE=3 SV=1
Length = 649
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 161/370 (43%), Gaps = 53/370 (14%)
Query: 179 EDNLL-----NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEP 233
ED+L+ NRKDLT L ID ++DDAL +G I + + +ADPT YI+
Sbjct: 179 EDDLILKESDNRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKH 238
Query: 234 GSLSDKDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-- 291
GS D A KR + +LP PM P L+ + SL + + + + +G+I+
Sbjct: 239 GSKLDVIASKRIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNK 298
Query: 292 -EYSVDNSIIKPTYMLTYESATELLHL-------NLEEEAELKILSEAAALRLQWRLQQG 343
E+ + + IK L+Y+ ++ + ++ IL LR++WR +
Sbjct: 299 IEFFL--AWIKSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNA 356
Query: 344 AIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN---- 399
+ ++E R V+ + II++ +E + A +++ E MI+ + A + S N
Sbjct: 357 VLFKDSIEYRFHVS---EHGKIIDVLIEKRR-IAHKIIEESMIVANISAANFLSKNIGFG 412
Query: 400 --NL-----------ALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR--- 443
N+ A+ + N V L +G ++ I+ ID R
Sbjct: 413 IYNVHSGFDLVNAENAVSFLRSYNLNFTVKEITTL-KGFCNLRRVLNIISNNYIDSRIRR 471
Query: 444 ---------KPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVE 494
P H LG Y +TSPIR+Y D++ H L++ + G++++
Sbjct: 472 FQSFGDFSTIPGPHFALGFSEYATWTSPIRKYSDMINHRL--LKSIIKKEKSIKPGEDIK 529
Query: 495 VKVEEAHPRD 504
+K+ E R+
Sbjct: 530 IKISEQRRRN 539
>sp|B4TJI0|RNB_SALHS Exoribonuclease 2 OS=Salmonella heidelberg (strain SL476) GN=rnb
PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|B5FU93|RNB_SALDC Exoribonuclease 2 OS=Salmonella dublin (strain CT_02021853) GN=rnb
PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|C0Q3R1|RNB_SALPC Exoribonuclease 2 OS=Salmonella paratyphi C (strain RKS4594) GN=rnb
PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q57NV9|RNB_SALCH Exoribonuclease 2 OS=Salmonella choleraesuis (strain SC-B67) GN=rnb
PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q8ZP54|RNB_SALTY Exoribonuclease 2 OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=rnb PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|A9MWU8|RNB_SALPB Exoribonuclease 2 OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=rnb PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 TAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|B5R490|RNB_SALEP Exoribonuclease 2 OS=Salmonella enteritidis PT4 (strain P125109)
GN=rnb PE=3 SV=1
Length = 644
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIISADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAHQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q89AM0|RNB_BUCBP Exoribonuclease 2 OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=rnb PE=3 SV=1
Length = 646
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 139/332 (41%), Gaps = 45/332 (13%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
DN L R+DLTHL ID ++DDAL + G + + ++DPT YI GS D
Sbjct: 186 DNSLKREDLTHLDFITIDNSSTKDIDDALYVEKQSLGAFNLIVAISDPTSYIPFGSSLDN 245
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDN- 297
A+KR + +LP T PM P +L+ SL+ + + + + SDG I YS
Sbjct: 246 FALKRSFTNYLPGFTIPMLPSELSENKCSLKVNKSRPVIACKIRIDSDGCILHNYSYFFL 305
Query: 298 SIIKPTYMLTYESATELLHLNLEEEAE-------LKILSEAAALRLQWRLQQGAIDTATL 350
+ IK L YE ++ L + E L +L+ +R WR +
Sbjct: 306 AWIKSKATLVYECVSDWLEHKGKWVPECSNIANQLFMLNSIYNIRRNWRKNYAVLFKEHP 365
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAIAT----YGSFNNLAL 403
E K+++ ++N+++E A ++V E MI +C + + +G + N+ +
Sbjct: 366 EYNFKLSSNFQ---VLNVFME-MRRTAHKIVEEAMIAANICAAKVLSEKLGFGIY-NVHI 420
Query: 404 PYRGQPQSNI-----------------DVSAFAHLPEGPVRSSA------IVKIMRAAAI 440
+ N+ + F L + S I K +
Sbjct: 421 GFDASNSENVVRLLSKYGFNFCKDEIRTLKGFCKLRRILNKHSYKYLDNRIKKYQSFGEL 480
Query: 441 DFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
F P H LGL Y +TSPIR+Y D++ H
Sbjct: 481 QFF-PGPHFALGLDAYATWTSPIRKYSDMVNH 511
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 152/355 (42%), Gaps = 78/355 (21%)
Query: 185 RKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
R+DL THL V++ID +++DDALS L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RRDLRSTHL-VFSIDPKGCEDVDDALSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS---IAEYSVDNSI 299
R T+ +L Y M P L+ + SL G + VSV+ D + I + +I
Sbjct: 524 TRATTYYLADRRYDMLPSILSADLCSLLGG--VDRYAVSVMWELDKTSYEIKKVWYGRTI 581
Query: 300 IKPTYMLTYESATELLHLNL---EEEAELKILSE----AAALRLQW-------------- 338
I+ Y L YE+A ELL N ++ E K L E A L W
Sbjct: 582 IRSAYKLFYEAAQELLDGNFSIVDDIPEFKTLEEQNRQAKLEELVWAIGKLTDIARHIRA 641
Query: 339 -RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--Y 395
R + GA++ +E R+++ D + I+ + Q V+E MIL +A +
Sbjct: 642 KRDRCGALELEGVEVRVQL----DDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIW 697
Query: 396 GSFNNLALPYRGQP----------------------QSN---IDVSAFAHLPEGPVRSSA 430
SF + AL + P +SN D A+ P P+
Sbjct: 698 ESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPSDPL---- 753
Query: 431 IVKIMRAAAID-------------FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ K++R+ A + H L L Y FTSPIRRY D++ H
Sbjct: 754 VNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVH 808
>sp|P57354|RNB_BUCAI Exoribonuclease 2 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnb PE=3 SV=1
Length = 649
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 156/360 (43%), Gaps = 48/360 (13%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
NRKDLT L ID ++DDAL +G I + + +ADPT YI+ GS D A K
Sbjct: 189 NRKDLTDLDFITIDNTNTKDIDDALFVSEKNNGDISLIVAIADPTAYIKHGSKLDVIASK 248
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA---EYSVDNSII 300
R + +LP PM P L+ + SL + + + + +G+I+ E+ + + I
Sbjct: 249 RIFTNYLPGFNIPMLPRNLSEDICSLNPNKRRPVLACHITVLKNGNISNKIEFFL--AWI 306
Query: 301 KPTYMLTYESATELLHL-------NLEEEAELKILSEAAALRLQWRLQQGAIDTATLETR 353
K L+Y+ ++ + ++ IL LR++WR + + ++E R
Sbjct: 307 KSKSKLSYDHVSDWIEKIGSWIPPTKSIANQILILHRLCLLRIKWRKKNAVLFKDSIEYR 366
Query: 354 IKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN------NL------ 401
V+ + II++ +E + A +++ E MI+ + A + S N N+
Sbjct: 367 FHVS---EHGKIIDVLIEKRR-IAHKIIEESMIVANISAANFLSKNIGFGIYNVHSGFDL 422
Query: 402 -----ALPYRGQPQSNIDVSAFAHLPEGPVRSSAIVKIMRAAAIDFR------------K 444
A+ + N V L +G ++ I+ ID R
Sbjct: 423 VNAENAVSFLRSYNLNFTVKEITTL-KGFCNLRRVLNIISNNYIDSRIRRFQSFGDFSTI 481
Query: 445 PVRHGVLGLPGYVQFTSPIRRYMDLLAHYQVGLQAAAWVSVGAQIGDEVEVKVEEAHPRD 504
P H LG Y +TSPIR+Y D++ H L++ + G+++++K+ E R+
Sbjct: 482 PGPHFALGFSEYATWTSPIRKYSDMINHRL--LKSIIKKEKSIKPGEDIKIKISEQRRRN 539
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 153/349 (43%), Gaps = 66/349 (18%)
Query: 184 NRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMK 243
R+DL ++ ID A +LDDALS L DG KV +H+AD + ++ GS DK A +
Sbjct: 370 KRRDLRKDCIFTIDPSTARDLDDALSCKPLADGNFKVGVHIADVSYFVPEGSDLDKVAAE 429
Query: 244 RGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVV--LHSDGSIAEYSVDNSIIK 301
R TSV+L PM P L E SL + + +T SV+ L +G I + +II+
Sbjct: 430 RATSVYLVQKVVPMLPRLLCEELCSL--NPMSDKLTFSVIWTLTPEGKILDEWFGRTIIR 487
Query: 302 PTYMLTYESATELLHLNLEE--EAELKILS--------EAAALRL-----QWRLQQGAID 346
L+YE A ++ E+ EL +S A L L Q R QQ +D
Sbjct: 488 SCTKLSYEHAQSMIESPTEKIPAKELPPISPEHSSEEVHQAVLNLHGIAKQLR-QQRFVD 546
Query: 347 TATLETRIKVANPEDPEPII----NLYVEDQADPAMRLVSEMMILCGEAIA--TYGSFNN 400
A ++K+A D E + ++Y +++ +LV E M+L A+A + +F
Sbjct: 547 GALRLDQLKLAFTLDHETGLPQGCHIYEYRESN---KLVEEFMLLANMAVAHKIHRAFPE 603
Query: 401 LALPYRG-QPQSNI--DVSAFAHLPEGPVRSSAIVKIMRAAAIDF--------RKPV--- 446
AL R PQ+ + D+ F PV S+ + ++ F RK V
Sbjct: 604 QALLRRHPPPQTRMLSDLVEFCDQMGLPVDFSSAGALNKSLTQTFGDDKYSLARKEVLTN 663
Query: 447 -----------------------RHGVLGLPGYVQFTSPIRRYMDLLAH 472
RH L +P Y FTSPIRR+ D+L H
Sbjct: 664 MCSRPMQMALYFCSGLLQDPAQFRHYALNVPLYTHFTSPIRRFADVLVH 712
>sp|B4TX11|RNB_SALSV Exoribonuclease 2 OS=Salmonella schwarzengrund (strain CVM19633)
GN=rnb PE=3 SV=1
Length = 644
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|B5F571|RNB_SALA4 Exoribonuclease 2 OS=Salmonella agona (strain SL483) GN=rnb PE=3
SV=1
Length = 644
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 145/334 (43%), Gaps = 50/334 (14%)
Query: 180 DNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDK 239
D L R+DLT L ID +++DDAL A L DGR+++ + +ADPT +I GS D
Sbjct: 184 DEGLERQDLTALNFVTIDSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDN 243
Query: 240 DAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSI-AEYSVDNS 298
A R + +LP PM P +L+ + SLR EV A+ +++ +DG+I + + +
Sbjct: 244 AAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAFFAA 303
Query: 299 IIKPTYMLTYESATELLHLNLEEEA-------ELKILSEAAALRLQWRLQQGAIDTATLE 351
I+ L Y++ ++ L N + ++++L R +WR + +
Sbjct: 304 TIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEWRHHHALVFKDRPD 363
Query: 352 TRIKVANPEDPEPIINLYVEDQADP---AMRLVSEMMI---LCGEAI----ATYGSFN-- 399
R + + I+ A+P A R+V E MI LC + +G +N
Sbjct: 364 YRFVLGEKGEVLDIV-------AEPRRIANRIVEESMIAANLCAARVLRDKLGFGIYNVH 416
Query: 400 -----------NLALPYRG---QPQSNIDVSAFAHL-------PEGPVRSSAIVKIMRAA 438
L G + + + F L P G + S I + A
Sbjct: 417 TGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQPSGFL-DSRIRRFQSFA 475
Query: 439 AIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
I +P H LGL Y +TSPIR+Y D++ H
Sbjct: 476 EIS-TEPGPHFGLGLEAYATWTSPIRKYGDMINH 508
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 157/355 (44%), Gaps = 78/355 (21%)
Query: 185 RKDL--THLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAM 242
RKDL THL V++ID +++DD LS L +G +++ +H+AD T ++ P S D +A
Sbjct: 465 RKDLRTTHL-VFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDVEAR 523
Query: 243 KRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGS---IAEYSVDNSI 299
R T+ +L Y M P L+ + SL G + VSV+ D + I + +I
Sbjct: 524 TRATTYYLADRRYDMLPSILSADLCSLLGG--VDRYAVSVMWELDKTSYEIKKVWYGRTI 581
Query: 300 IKPTYMLTYESATELLHLNL---EEEAELKIL---SEAAAL-RLQW-------------- 338
I+ Y L YE+A ELL N ++ ELK L S+ A L L W
Sbjct: 582 IRSAYKLFYEAAQELLDGNFSIVDDIPELKALDKQSQQAKLEELVWAIGKLTDIARHIRA 641
Query: 339 -RLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIAT--Y 395
R + GA++ +E R+++ +D + I +L + Q V+E MIL +A +
Sbjct: 642 KRDRCGALELEGVEVRVQL---DDKKNIRDL-IPKQPLEVHETVAECMILANHWVAKKIW 697
Query: 396 GSFNNLALPYRGQP----------------------QSN---IDVSAFAHLPEGPVRSSA 430
SF + AL + P +SN D A+ P+ P+
Sbjct: 698 ESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDSANDPKDPL---- 753
Query: 431 IVKIMRAAAID-------------FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+ K++R+ A + H L L Y FTSPIRRY D++ H
Sbjct: 754 VNKLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVH 808
>sp|D3V184|RNB_XENBS Exoribonuclease 2 OS=Xenorhabdus bovienii (strain SS-2004) GN=rnb
PE=3 SV=1
Length = 646
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 147/331 (44%), Gaps = 42/331 (12%)
Query: 179 EDNLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSD 238
+D L R DLT L ID +++DDAL ++ DG +K+ I +ADPT YI+ S D
Sbjct: 185 DDGSLERIDLTALDFVTIDSATTEDMDDALHIVKNNDGSLKLSIAIADPTAYIKADSELD 244
Query: 239 KDAMKRGTSVFLPTATYPMFPEKLAMEGMSLRQGEVCNAVTVSVVLHSDGSIA-EYSVDN 297
K A +R + +LP PM P +L+ + SLR A+ V + DG + +
Sbjct: 245 KIAYQRSFTNYLPGFNIPMLPRELSDDLCSLRPKARRPALVCQVSILEDGQLGDDMQFFA 304
Query: 298 SIIKPTYMLTYESATELLH----LNLEEEA---ELKILSEAAALRLQWRLQQGAIDTATL 350
+ ++ + L Y+ ++ L E EA ++ +L E R QWR Q +
Sbjct: 305 AWVESKFKLAYDDVSDWLEHQTGWKPESEAVTTQITLLQEMCERRNQWRHQYALVFKERP 364
Query: 351 ETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMI---LCGEAI----ATYGSFNNLA- 402
+ R + + ++++ + DQ A R+V E MI LC I +G +N
Sbjct: 365 DYRFVLDKGGN---VVDIVI-DQRRSANRIVEEAMITANLCAAKILRDKLGFGIYNVHTG 420
Query: 403 ------------LPYRG-QPQSN--IDVSAFAH----LPEGPVR--SSAIVKIMRAAAID 441
L G + ++N +++ F L + P + S I + A I
Sbjct: 421 FEPTQIDQVVDVLKENGIEAEANALLELDGFCQLRRELDQQPTQFLDSRIRRFQTFAEIR 480
Query: 442 FRKPVRHGVLGLPGYVQFTSPIRRYMDLLAH 472
+P H LG Y +TSPIR+Y D++ H
Sbjct: 481 -PEPGPHFGLGFDAYATWTSPIRKYSDIINH 510
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,690,268
Number of Sequences: 539616
Number of extensions: 7490913
Number of successful extensions: 20265
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 19922
Number of HSP's gapped (non-prelim): 275
length of query: 514
length of database: 191,569,459
effective HSP length: 122
effective length of query: 392
effective length of database: 125,736,307
effective search space: 49288632344
effective search space used: 49288632344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)