Query 010247
Match_columns 514
No_of_seqs 274 out of 1467
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r7d_A Ribonuclease II family 100.0 2.4E-83 8.2E-88 688.1 34.7 314 183-513 79-462 (469)
2 2id0_A Exoribonuclease 2; RNAs 100.0 1.6E-81 5.6E-86 697.1 35.7 287 183-475 187-511 (644)
3 2vnu_D Exosome complex exonucl 100.0 6.3E-78 2.2E-82 678.8 31.4 291 181-475 286-617 (760)
4 2wp8_J Exosome complex exonucl 100.0 5.3E-77 1.8E-81 683.5 24.0 291 181-475 503-834 (977)
5 2k52_A Uncharacterized protein 61.9 8.1 0.00028 30.5 4.2 27 485-511 44-70 (80)
6 1luz_A Protein K3, protein K2; 46.4 18 0.00063 29.3 3.9 22 489-510 59-80 (88)
7 2khi_A 30S ribosomal protein S 46.0 15 0.00053 31.0 3.6 27 484-510 73-99 (115)
8 1wi5_A RRP5 protein homolog; S 45.3 18 0.00062 30.7 3.9 28 484-511 65-92 (119)
9 2k4k_A GSP13, general stress p 44.5 20 0.00069 31.1 4.2 27 484-510 49-75 (130)
10 3bzc_A TEX; helix-turn-helix, 43.6 10 0.00034 43.0 2.5 24 487-510 699-722 (785)
11 2khj_A 30S ribosomal protein S 41.3 25 0.00087 29.3 4.2 27 484-510 73-99 (109)
12 1kl9_A Eukaryotic translation 37.4 27 0.00093 32.3 4.0 27 484-510 59-85 (182)
13 2a19_A EIF-2- alpha, eukaryoti 36.7 30 0.001 31.8 4.2 27 484-510 59-85 (175)
14 2eqs_A ATP-dependent RNA helic 35.1 34 0.0012 28.3 3.9 24 485-510 59-82 (103)
15 1u07_A TONB protein; beta-hair 29.8 58 0.002 25.9 4.4 22 277-298 26-47 (90)
16 2cqo_A Nucleolar protein of 40 27.1 44 0.0015 28.5 3.4 26 485-510 66-93 (119)
17 3mqp_B Phorbol-12-myristate-13 24.5 36 0.0012 21.3 1.6 13 462-474 10-22 (25)
18 2k9k_A TONB2; metal transport; 23.1 72 0.0024 26.1 3.9 22 277-298 41-62 (106)
19 1q8k_A Eukaryotic translation 21.5 74 0.0025 31.9 4.2 27 484-510 57-83 (308)
20 3aev_A Translation initiation 21.3 75 0.0026 31.3 4.2 27 484-510 55-81 (275)
21 2jm6_A NOXA; apoptosis, BCL-2, 21.0 46 0.0016 21.2 1.6 13 462-474 10-22 (27)
No 1
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=100.00 E-value=2.4e-83 Score=688.08 Aligned_cols=314 Identities=27% Similarity=0.372 Sum_probs=294.2
Q ss_pred cCCCCCCCCeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCChhh
Q 010247 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKL 262 (514)
Q Consensus 183 ~~R~Dlr~l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~~L 262 (514)
++|+|||++++|||||++|+|+|||||+++++||+|+|||||||||+||+|||+||+||++||||||||++++||||+.|
T Consensus 79 ~~R~Dlr~l~~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L 158 (469)
T 2r7d_A 79 EERLDLTHLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL 158 (469)
T ss_dssp SCCEECTTSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH
T ss_pred cCceecccCCEEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCeeeEEEEEEEECCCCCeeeEEEEEeEEecccccCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHhC
Q 010247 263 AMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLEEEAELKILSEAAALRLQWRLQQ 342 (514)
Q Consensus 263 s~~~~SL~pg~~r~AlSv~~~ld~~G~I~~~~i~~siIrs~~~LtY~ev~~il~~~~~~~~~L~~L~~la~~l~~~R~~~ 342 (514)
+++|||+||++|+||||.+++|++|+|++++|++|+|+|+ +|||++|+++|+++ +++|..|+++|+.|+++|.++
T Consensus 159 -~~~cSL~pg~dr~als~~~~id~~G~i~~~~~~~svI~s~-rltY~~v~~~l~~~---~~~L~~L~~la~~lr~~R~~~ 233 (469)
T 2r7d_A 159 -VAKAGLGLHEVSPALSICLDLDPDGNAEAVDVLLTRVKVQ-RLAYQEAQARLEAG---EEPFVTLARLARASRRLREGE 233 (469)
T ss_dssp -HHHHSTTSSSSEEEEEEEEEECTTSCEEEEEEEEEEECEE-EEEHHHHHHHHHTT---CTTHHHHHHHHHHHHHHHHHT
T ss_pred -hcccCCCCCCceEEEEEEEEEcCCCCEeeeEEEEEEEEec-cccHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999999 99999999999975 478999999999999999999
Q ss_pred CCccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhCCCCceeecCCCCCCChhhhccCC
Q 010247 343 GAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNIDVSAFAHLP 422 (514)
Q Consensus 343 Gal~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~~ip~~yR~q~~P~~~~~~l~~l~ 422 (514)
|+++|+.||.+|.+++ + .+.+.+.+ ++++++|||||||+||++||+|+.++++|++||+|+.|+.++. +
T Consensus 234 Gai~~~~pe~~i~~d~---~--~~~i~~~~-~~~a~~lIeE~MilAN~~vA~~l~~~~ip~~yR~h~~p~~~~~-----~ 302 (469)
T 2r7d_A 234 GALSIDLPEVRVKADE---T--GASVFPLP-KPEMRTVVQECMTLAGWGTAIFADDNEIPLPFATQDYPTREVA-----G 302 (469)
T ss_dssp TCCCCCCCCEEEEEET---T--EEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCSSCCC-----C
T ss_pred CCcccCCCceEEEECC---C--cceEEecC-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeeCCCCCcccC-----c
Confidence 9999999999999986 2 58888887 9999999999999999999999999999999999999986653 7
Q ss_pred CCcchHHHHHHhcccCccccCCCCcccccCCCCccccccchhhhHHHHHHHHh---------------------------
Q 010247 423 EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIRRYMDLLAHYQV--------------------------- 475 (514)
Q Consensus 423 ~g~v~~~~l~r~m~~A~ys~~~~~~H~gLgl~~YthfTSPIRRYaDLvvHrQL--------------------------- 475 (514)
++.+...+++|+|++|.|++ .|.+|||||++.|||||||||||+||+|||||
T Consensus 303 ~~~~~~~~l~r~m~~a~y~~-~~~~HfgL~~~~YthfTSPIRRY~DLivHr~L~a~l~~~~~~~~~~l~~~~~~~~~~er 381 (469)
T 2r7d_A 303 DTLPAMWARRKTLARTRFQP-SPGPHHGMGLDLYAQATSPMRRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNAD 381 (469)
T ss_dssp CSHHHHHHHHHHCCCEEEES-SCCCBTTTTBSCCCCCSCTTTBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcccccccC-CCCCchhhCccceeeECCcccccHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 77788888999999999999 99999999999999999999999999999999
Q ss_pred ----------------------ccc---------------------cccccccccCCCcEEEEEEeeecCCCCeEEEEEe
Q 010247 476 ----------------------GLQ---------------------AAAWVSVGAQIGDEVEVKVEEAHPRDDIIYLKEV 512 (514)
Q Consensus 476 ----------------------g~~---------------------~~~~~~~~~~~gd~~~v~~~~~dp~~~~~~~~~~ 512 (514)
|.. ...+.....++||.|.|+|.++|+.+..|+|+.+
T Consensus 382 ~a~~aer~~~~~~~~~~l~~~~g~~f~g~vv~l~~~~glV~v~~l~~d~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 382 ATRQAERLSRRHHTLRFIAAQPERVWDAVVVDRRGAQATLLIPDLAFDVQVNTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEEETTEEEEEEGGGTEEEEEECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEEeCcEEEEEECCCCeEEecCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 111 0123345679999999999999999999999987
Q ss_pred c
Q 010247 513 V 513 (514)
Q Consensus 513 ~ 513 (514)
.
T Consensus 462 ~ 462 (469)
T 2r7d_A 462 L 462 (469)
T ss_dssp C
T ss_pred h
Confidence 5
No 2
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=100.00 E-value=1.6e-81 Score=697.08 Aligned_cols=287 Identities=28% Similarity=0.392 Sum_probs=265.3
Q ss_pred cCCCCCCCCeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCChhh
Q 010247 183 LNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPEKL 262 (514)
Q Consensus 183 ~~R~Dlr~l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~~L 262 (514)
++|+|||++++|||||++|+|+|||||++++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+.|
T Consensus 187 ~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~~~iPMLP~~L 266 (644)
T 2id0_A 187 LVREDLTALDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPREL 266 (644)
T ss_dssp CCCCCCCSSCCBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEEETTEEECSSCHHH
T ss_pred ccceeccCCcEEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHHHHHHHHhCCcEeCCCEEEeCCCHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCeeeEEEEEEEECCCCCeee-EEEEEeEEecccccCHHHHHHHHhcCc-------cchHHHHHHHHHHHH
Q 010247 263 AMEGMSLRQGEVCNAVTVSVVLHSDGSIAE-YSVDNSIIKPTYMLTYESATELLHLNL-------EEEAELKILSEAAAL 334 (514)
Q Consensus 263 s~~~~SL~pg~~r~AlSv~~~ld~~G~I~~-~~i~~siIrs~~~LtY~ev~~il~~~~-------~~~~~L~~L~~la~~ 334 (514)
|+++|||+||++|+||||.|++|++|+|++ ++|++|+|+|+++|||++|+++|+++. ...+.|..|+++|+.
T Consensus 267 s~~lcSL~p~~dR~a~s~~~~id~~G~v~~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~~~~~~~~~L~~L~~la~~ 346 (644)
T 2id0_A 267 SDDLCSLRANEVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQR 346 (644)
T ss_dssp HTTTSSCCSSCEEEEEEEEEEECSSCCCSTTCCEEEEEEECCCEEEHHHHHHHTTCCSSCCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCCCCceEEEEEEEEEeCCCCEeeccEEEEEEEEeccccCHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 999999999999999999999998743 124689999999999
Q ss_pred HHHHHHhCCCccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhCCCCceeecCCCCCCC
Q 010247 335 RLQWRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFNNLALPYRGQPQSNID 414 (514)
Q Consensus 335 l~~~R~~~Gal~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~~ip~~yR~q~~P~~~ 414 (514)
|+++|.++|++.++.||++|.+++ ++.++.+.+.+ +.++++|||||||+||++||+++.++++|++||+|+.|+.+
T Consensus 347 lr~~R~~~Gai~~~~pe~~~~ld~---~g~~~~i~~~~-~~~a~~lIeE~MllAN~~vA~~l~~~~~~~lyR~h~~p~~~ 422 (644)
T 2id0_A 347 RGEWRHNHALVFKDRPDYRFILGE---KGEVLDIVAEP-RRIANRIVEEAMIAANICAARVLRDKLGFGIYNVHMGFDPA 422 (644)
T ss_dssp HHHHHHHHSCCCCCCCCEEEEECT---TSCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEBCCBCTT
T ss_pred HHHHHHhCCCccccCCceEEEECC---CCCEEEEEEec-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCceeecCCCCCHH
Confidence 999999999999999999999987 34568888888 99999999999999999999999999999999999999877
Q ss_pred hh-hhc--------cCC---------------------CCcchHHHHHHhcccCccccCCCCcccccCCCCccccccchh
Q 010247 415 VS-AFA--------HLP---------------------EGPVRSSAIVKIMRAAAIDFRKPVRHGVLGLPGYVQFTSPIR 464 (514)
Q Consensus 415 ~~-~l~--------~l~---------------------~g~v~~~~l~r~m~~A~ys~~~~~~H~gLgl~~YthfTSPIR 464 (514)
+. +|. .++ .. +.+.+++|+|++|.|++ .|.+|||||++.|||||||||
T Consensus 423 ~l~~l~~~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~l~r~~~~a~ys~-~~~~HfgLa~~~YthfTSPIR 500 (644)
T 2id0_A 423 NADALAALLKTHGLHVDAEEVLTLDGFCKLRRELDAQPTG-FLDSRIRRFQSFAEIST-EPGPHFGLGLEAYATWTSPIR 500 (644)
T ss_dssp THHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHTSSSS-HHHHHHTTSBCCCEEES-SCCCBTTTTBSSCBCCSCTTT
T ss_pred HHHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHhcCChHH-HHHHHHHHhcccccccC-CCCCchhcCCCceeeeCChhh
Confidence 65 221 111 11 23356789999999999 999999999999999999999
Q ss_pred hhHHHHHHHHh
Q 010247 465 RYMDLLAHYQV 475 (514)
Q Consensus 465 RYaDLvvHrQL 475 (514)
||+||+|||||
T Consensus 501 RY~DLivHR~l 511 (644)
T 2id0_A 501 KYGDMINHRLL 511 (644)
T ss_dssp BHHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 99999999999
No 3
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=100.00 E-value=6.3e-78 Score=678.80 Aligned_cols=291 Identities=26% Similarity=0.328 Sum_probs=263.8
Q ss_pred hccCCCCCCCCeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCCh
Q 010247 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPE 260 (514)
Q Consensus 181 ~~~~R~Dlr~l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~ 260 (514)
..++|+|||++++|||||++|+|+||||||+++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+
T Consensus 286 ~~~~R~Dlr~l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~ 365 (760)
T 2vnu_D 286 LLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPM 365 (760)
T ss_dssp GGGGSEECTTSCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCH
T ss_pred chhcccccccCeEEEEcCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCCh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCeeeEEEEEEEECCCCCeeeEEEEEeEEecccccCHHHHHHHHhcCcc---chHHHHHHHHHHHHHHH
Q 010247 261 KLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLE---EEAELKILSEAAALRLQ 337 (514)
Q Consensus 261 ~Ls~~~~SL~pg~~r~AlSv~~~ld~~G~I~~~~i~~siIrs~~~LtY~ev~~il~~~~~---~~~~L~~L~~la~~l~~ 337 (514)
.||+++|||+||++|+||||.|++|++|+|++++|++|+|+|.++|||++|+++|+++.. ..+.|..|+++|+.|++
T Consensus 366 ~Ls~~lcSL~p~~dRla~S~~~~id~~G~v~~~~~~~svI~s~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~lr~ 445 (760)
T 2vnu_D 366 LLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQ 445 (760)
T ss_dssp HHHTTTSSCCBTSEEEEEEEEEEECTTCCEEEEEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcccccccCCCCcEEEEEEEEEEcCCCCEEEEEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997533 25789999999999999
Q ss_pred HHHhCCCccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhC-CCCceeecCCCCCCChh
Q 010247 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN-NLALPYRGQPQSNIDVS 416 (514)
Q Consensus 338 ~R~~~Gal~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~-~ip~~yR~q~~P~~~~~ 416 (514)
+|.++|+++|+.||.+|.+++. .+.++.+...+ +.+++.|||||||+||++||+++.++ +.|++||+|+.|+.++.
T Consensus 446 ~R~~~Gai~~~~pe~~~~ld~e--~g~~~~i~~~~-~~~a~~lIeE~MllAN~~vA~~l~~~~~~~~l~R~h~~P~~~~l 522 (760)
T 2vnu_D 446 KRLEAGALNLASPEVKVHMDSE--TSDPNEVEIKK-LLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNF 522 (760)
T ss_dssp HHHHTTCCCCCCCCEEEEECSS--SSCEEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGG
T ss_pred HHHhCCCcccCCCceEEEEecC--CCcEEEEEEcC-CccHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCCCHHHH
Confidence 9999999999999999999831 34467888888 99999999999999999999999976 79999999999987664
Q ss_pred -hh------c-cCC-------------------CCcch----HHHHHHhcccCccc------cCCCCcccccCCCCcccc
Q 010247 417 -AF------A-HLP-------------------EGPVR----SSAIVKIMRAAAID------FRKPVRHGVLGLPGYVQF 459 (514)
Q Consensus 417 -~l------~-~l~-------------------~g~v~----~~~l~r~m~~A~ys------~~~~~~H~gLgl~~Ythf 459 (514)
+| . .++ ..+.. ..+++|+|++|.|+ + .+.+|||||++.||||
T Consensus 523 ~~l~~~~~~~~g~~l~~~~~~~l~~~l~~~~~~~~~~~~~ll~~~~~r~m~~A~Y~~~g~~~~-~~~~HfgLa~~~YtHf 601 (760)
T 2vnu_D 523 EILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSY-PDFRHYGLAVDIYTHF 601 (760)
T ss_dssp HHHHHHHHHHHSCCCCCSCHHHHHHHHHTCCBTTBTTHHHHHHHHHHTTSCCCEEEEGGGSCG-GGGCBTTTTBSCCCCC
T ss_pred HHHHHHHHHccCCCcCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhhCccccccCcCCC-CCCCceecCCCceecc
Confidence 11 1 111 11111 13467999999996 6 8899999999999999
Q ss_pred ccchhhhHHHHHHHHh
Q 010247 460 TSPIRRYMDLLAHYQV 475 (514)
Q Consensus 460 TSPIRRYaDLvvHrQL 475 (514)
|||||||+||+|||||
T Consensus 602 TSPIRRY~DLivHR~L 617 (760)
T 2vnu_D 602 TSPIRRYCDVVAHRQL 617 (760)
T ss_dssp SCTTTBHHHHHHHHHH
T ss_pred CchHhhhHHHHHHHHH
Confidence 9999999999999999
No 4
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-77 Score=683.51 Aligned_cols=291 Identities=26% Similarity=0.333 Sum_probs=261.9
Q ss_pred hccCCCCCCCCeEEEEeCCCCCCccceEEEEEecCCeEEEEEEecCcccccCCCCHHHHHHHhcCceeecCCCcccCCCh
Q 010247 181 NLLNRKDLTHLKVYAIDVDEADELDDALSAMRLQDGRIKVYIHVADPTKYIEPGSLSDKDAMKRGTSVFLPTATYPMFPE 260 (514)
Q Consensus 181 ~~~~R~Dlr~l~~fTID~~~a~DiDDAlSie~l~dG~~~vgVHIADVa~~V~~gS~LD~eA~~RgtSVYLp~~~ipMLP~ 260 (514)
..++|+|||++++|||||++|+|+|||||++++++|+|+|||||||||+||+|||+||+||++||||||||++++||||+
T Consensus 503 ~~~~R~Dlr~l~~~TID~~~akDlDDAvsie~~~~G~~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~ 582 (977)
T 2wp8_J 503 LLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPM 582 (977)
T ss_dssp GGGGCEECTTSCCEEEECTTCSCCCEEEEEEECTTSCEEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCH
T ss_pred ccccceecccCcEEEECCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCCh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCeeeEEEEEEEECCCCCeeeEEEEEeEEecccccCHHHHHHHHhcCcc---chHHHHHHHHHHHHHHH
Q 010247 261 KLAMEGMSLRQGEVCNAVTVSVVLHSDGSIAEYSVDNSIIKPTYMLTYESATELLHLNLE---EEAELKILSEAAALRLQ 337 (514)
Q Consensus 261 ~Ls~~~~SL~pg~~r~AlSv~~~ld~~G~I~~~~i~~siIrs~~~LtY~ev~~il~~~~~---~~~~L~~L~~la~~l~~ 337 (514)
.||+++|||+||++|+||||.|+||++|+|++++|++|+|+|.++|||++|+++|+++.. ..+.|..|+++|+.|++
T Consensus 583 ~LS~~lcSL~pg~dRla~Sv~~~id~~G~i~~~~~~~svIrs~~rltY~~v~~~l~~~~~~~~l~~~L~~L~~la~~Lr~ 662 (977)
T 2wp8_J 583 LLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRIDDKTQNDELTMGMRALLKLSVKLKQ 662 (977)
T ss_dssp HHHTTTSSCCBTSEEEEEEEEEEECTTSCEEEEEEEEEEEEBSEEEEHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCceEEEEEEEEECCCCCEEEEEEEEEEEEecceEcHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997543 25789999999999999
Q ss_pred HHHhCCCccCCCcceEEEecCCCCCCCcEEEEEecCCChHHHHHHHHHHHHHHHHHHHhhhC-CCCceeecCCCCCCChh
Q 010247 338 WRLQQGAIDTATLETRIKVANPEDPEPIINLYVEDQADPAMRLVSEMMILCGEAIATYGSFN-NLALPYRGQPQSNIDVS 416 (514)
Q Consensus 338 ~R~~~Gal~~~~pe~~~~l~~~~d~~~~i~i~~~~~~~~a~~LVeE~MIlAN~~vA~~l~~~-~ip~~yR~q~~P~~~~~ 416 (514)
+|.++|+++|+.||.+|.+++. ++.++.+...+ +.+++.|||||||+||++||+++.++ +.|++||+|+.|+.++.
T Consensus 663 ~R~~~Gai~~~~pE~~~~ld~e--~g~~~~i~~~~-~~~a~~LIEE~MllAN~~vA~~l~~~~~~~~lyR~h~~P~~~kl 739 (977)
T 2wp8_J 663 KRLEAGALNLASPEVKVHMDSE--TSDPNEVEIKK-LLATNSLVEEFMLLANISVARKIYDAFPQTAMLRRHAAPPSTNF 739 (977)
T ss_dssp HHHTTTCCCCCSHHHHTTSCCT--TCCCCCSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEBCCCCGGGG
T ss_pred HHHhCCCcccCCCceEEEeccC--CCceEEEEecC-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHH
Confidence 9999999999999999988831 23457777777 88999999999999999999999876 79999999999987664
Q ss_pred -hh------c-cCC-------------------CCcch----HHHHHHhcccCcc------ccCCCCcccccCCCCcccc
Q 010247 417 -AF------A-HLP-------------------EGPVR----SSAIVKIMRAAAI------DFRKPVRHGVLGLPGYVQF 459 (514)
Q Consensus 417 -~l------~-~l~-------------------~g~v~----~~~l~r~m~~A~y------s~~~~~~H~gLgl~~Ythf 459 (514)
.| . .++ ..+.. ..+++|+|++|.| ++ .+.+|||||++.||||
T Consensus 740 ~~l~~~~~~~~G~~l~~~~~~~l~~~L~~~~~~~~~~~~~ll~~~~lrsm~~A~Y~~sg~~s~-~~~gHfgLa~~~YtHf 818 (977)
T 2wp8_J 740 EILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYFNTLVRIMSTRCMMAAQYFYSGAYSY-PDFRHYGLAVDIYTHF 818 (977)
T ss_dssp HHHHHHHHHHHSCCCCCSSHHHHHHHHHHCCCSSCTTHHHHHHHHHHTTSCCCEEEEGGGSCG-GGSCBTTTTBSSCCCC
T ss_pred HHHHHHHHHccCCCCCCCCHHHHHHHHHHhhCCchHHHHHHHHHHHHHhccCceeecccccCC-CCCCceecCCCCeecc
Confidence 21 1 111 11111 1245789999999 56 8999999999999999
Q ss_pred ccchhhhHHHHHHHHh
Q 010247 460 TSPIRRYMDLLAHYQV 475 (514)
Q Consensus 460 TSPIRRYaDLvvHrQL 475 (514)
|||||||+||+|||||
T Consensus 819 TSPIRRY~DLivHR~L 834 (977)
T 2wp8_J 819 TSPIRRYCDVVAHRQL 834 (977)
T ss_dssp SCTTTBHHHHHHHHHH
T ss_pred CchHhhHHHHHHHHHH
Confidence 9999999999999999
No 5
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=61.88 E-value=8.1 Score=30.54 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=24.2
Q ss_pred cccCCCcEEEEEEeeecCCCCeEEEEE
Q 010247 485 VGAQIGDEVEVKVEEAHPRDDIIYLKE 511 (514)
Q Consensus 485 ~~~~~gd~~~v~~~~~dp~~~~~~~~~ 511 (514)
.-+++||.|.|+|..+|+.+..|+|..
T Consensus 44 ~~~~~Gd~V~v~V~~vd~~~~~i~lsl 70 (80)
T 2k52_A 44 ENLNVGDEIIVQAIDVRPEKREIDFKY 70 (80)
T ss_dssp GGCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred eeeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 458999999999999999999998875
No 6
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=46.44 E-value=18 Score=29.29 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.3
Q ss_pred CCcEEEEEEeeecCCCCeEEEE
Q 010247 489 IGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 489 ~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
+||+|.|+|.++|+.+..|+|.
T Consensus 59 ~Gd~V~VkV~~vd~~~~kI~ls 80 (88)
T 1luz_A 59 VGKTVKVKVIRVDYTKGYIDVN 80 (88)
T ss_dssp TTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEEEEECCCCEEEEE
Confidence 8999999999999998888775
No 7
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=46.03 E-value=15 Score=31.04 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=23.7
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+|+.+..|+|.
T Consensus 73 ~~~~~vGd~V~vkV~~vd~~~~rI~ls 99 (115)
T 2khi_A 73 SKVVNVGDVVEVMVLDIDEERRRISLG 99 (115)
T ss_dssp TTTCCTTCEEEEEEEEEETTTTEEEEC
T ss_pred ccEECCCCEEEEEEEEEECCCCEEEEE
Confidence 446899999999999999988888875
No 8
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=45.34 E-value=18 Score=30.69 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=24.4
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLKE 511 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~~ 511 (514)
..-+++||.|.|+|..+|+....|+|..
T Consensus 65 ~~~~~~Gd~V~vkV~~vd~~~~~i~Lsl 92 (119)
T 1wi5_A 65 GAKLKVGQYLNCIVEKVKGNGGVVSLSV 92 (119)
T ss_dssp SCCCCTTCEEEEEEEECCTTSCEEEEEC
T ss_pred cCEeCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 4568999999999999999888888863
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=44.53 E-value=20 Score=31.11 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=23.8
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+|+.+..|+|.
T Consensus 49 ~~~~~vGd~V~vkV~~vd~~~~kI~LS 75 (130)
T 2k4k_A 49 NEHLSVGDEVQVKVLAVDEEKGKISLS 75 (130)
T ss_dssp GGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred cccCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 456899999999999999988888875
No 10
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=43.64 E-value=10 Score=43.02 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=22.1
Q ss_pred cCCCcEEEEEEeeecCCCCeEEEE
Q 010247 487 AQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 487 ~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
+++||.|.|+|..+|+.+..|+|.
T Consensus 699 ~~vGd~V~VkVi~VD~~~~rI~LS 722 (785)
T 3bzc_A 699 VKAGDIVKVKVMEVDIPRNRVGLS 722 (785)
T ss_dssp CCTTCCCCCBEEEEETTTTEEEEC
T ss_pred eCCCCEEEEEEEEEECCCCEEEEE
Confidence 689999999999999999999885
No 11
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=41.26 E-value=25 Score=29.28 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=23.3
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+|+....|.|.
T Consensus 73 ~~~~~vGd~V~v~V~~vd~~~~ki~LS 99 (109)
T 2khj_A 73 TLVLSVGDEVEAKFTGVDRKNRAISLS 99 (109)
T ss_dssp GGSCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred hhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 345899999999999999988888875
No 12
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=37.37 E-value=27 Score=32.30 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=21.8
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+|+.+..|+|.
T Consensus 59 ~~~~~vGd~V~VkVl~vD~~~~rI~LS 85 (182)
T 1kl9_A 59 NKLIRIGRNECVVVIRVDKEKGYIDLS 85 (182)
T ss_dssp ----CTTCEEEEEEEEEETTTTEEEEE
T ss_pred HHhcCCCCEEEEEEEEEECCCCEEEEE
Confidence 345799999999999999999999885
No 13
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=36.65 E-value=30 Score=31.79 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=24.2
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+|+.+..|+|.
T Consensus 59 ~~~~~vGd~V~vkVl~vd~~~~~I~LS 85 (175)
T 2a19_A 59 QKLIRVGKNDVAVVLRVDKEKGYIDLS 85 (175)
T ss_dssp CCCCCTTSEEEEEEEEEETTTTEEEEE
T ss_pred HHcCCCCCEEEEEEEEEECCCCeEEEE
Confidence 455899999999999999999999885
No 14
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.06 E-value=34 Score=28.32 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=20.1
Q ss_pred cccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 485 VGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 485 ~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
.-+++||.|.|+|..+|+ ..|+|.
T Consensus 59 ~~~~~Gd~V~VkV~~vd~--~~i~LS 82 (103)
T 2eqs_A 59 DVVSKGQRVKVKVLSFTG--TKTSLS 82 (103)
T ss_dssp HHCCTTCEEEEEEEEEET--TEEEEE
T ss_pred cEeCCCCEEEEEEEEEEC--CeeEEE
Confidence 447999999999999998 477764
No 15
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=29.81 E-value=58 Score=25.85 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.1
Q ss_pred EEEEEEEECCCCCeeeEEEEEe
Q 010247 277 AVTVSVVLHSDGSIAEYSVDNS 298 (514)
Q Consensus 277 AlSv~~~ld~~G~I~~~~i~~s 298 (514)
.+.+.|.+|++|+|.+.++..+
T Consensus 26 ~V~v~~~i~~~G~v~~~~v~~s 47 (90)
T 1u07_A 26 QVKVKFDVTPDGRVDNVQILSA 47 (90)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEec
Confidence 5789999999999999888665
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.07 E-value=44 Score=28.49 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=21.3
Q ss_pred cccCCCcEEEEEEeeecCCC--CeEEEE
Q 010247 485 VGAQIGDEVEVKVEEAHPRD--DIIYLK 510 (514)
Q Consensus 485 ~~~~~gd~~~v~~~~~dp~~--~~~~~~ 510 (514)
.-+++||.|.|+|..+|+.+ ..|+|.
T Consensus 66 ~~~~~Gd~V~VkV~~vd~~~~~~~i~LS 93 (119)
T 2cqo_A 66 EIVDVGDKVWVKLIGREMKNDRIKVSLS 93 (119)
T ss_dssp HHCCTTCEEEEEEEEEEECSSCEEEEEE
T ss_pred hcCCCCCEEEEEEEEEeccccCceEEEE
Confidence 44799999999999999864 477764
No 17
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=24.54 E-value=36 Score=21.34 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=11.6
Q ss_pred chhhhHHHHHHHH
Q 010247 462 PIRRYMDLLAHYQ 474 (514)
Q Consensus 462 PIRRYaDLvvHrQ 474 (514)
-+||+.|.+|-||
T Consensus 10 qlrr~gdkln~rq 22 (25)
T 3mqp_B 10 QLRRFGDKLNFRQ 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 4899999999887
No 18
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=23.10 E-value=72 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.1
Q ss_pred EEEEEEEECCCCCeeeEEEEEe
Q 010247 277 AVTVSVVLHSDGSIAEYSVDNS 298 (514)
Q Consensus 277 AlSv~~~ld~~G~I~~~~i~~s 298 (514)
.+.+.|.||++|+|.+.++.++
T Consensus 41 ~V~v~f~I~~~G~v~~~~v~~s 62 (106)
T 2k9k_A 41 FVTLSFTIDTTGKAVDINVVDA 62 (106)
T ss_dssp EEEEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEc
Confidence 5789999999999999888665
No 19
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=21.49 E-value=74 Score=31.89 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=24.0
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+||.+..|+|.
T Consensus 57 ~~~~kvGd~V~VkVl~vD~~~~rI~LS 83 (308)
T 1q8k_A 57 NKLIRIGRNECVKVIRVDKEKGYIDLS 83 (308)
T ss_dssp TTTCSSSCEEEEEEEEEETTTTEEEEE
T ss_pred HHhcCCCCEEEEEEEEEeCCCCEEEEE
Confidence 455899999999999999999999886
No 20
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=21.26 E-value=75 Score=31.26 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=23.9
Q ss_pred ccccCCCcEEEEEEeeecCCCCeEEEE
Q 010247 484 SVGAQIGDEVEVKVEEAHPRDDIIYLK 510 (514)
Q Consensus 484 ~~~~~~gd~~~v~~~~~dp~~~~~~~~ 510 (514)
..-+++||.|.|+|..+|+.+..|+|.
T Consensus 55 ~~~~kvGd~V~vkVi~vD~~~~~I~LS 81 (275)
T 3aev_A 55 RDYLKEGQKVVAKVIRVDPRKGHIDLS 81 (275)
T ss_dssp GGTCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred HhccCCCCEEEEEEEEEECCCCEEEEE
Confidence 345899999999999999999999885
No 21
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=21.05 E-value=46 Score=21.23 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.8
Q ss_pred chhhhHHHHHHHH
Q 010247 462 PIRRYMDLLAHYQ 474 (514)
Q Consensus 462 PIRRYaDLvvHrQ 474 (514)
-+||+.|.+|-||
T Consensus 10 qlr~~gdkln~rq 22 (27)
T 2jm6_A 10 QLRRIGDKVNLRQ 22 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHH
Confidence 5899999999987
Done!